lowQualScore : 1111111111
lowQualScore : 1 333 1 1 4444444444 55555 1 5555555555555 22222 1 4
lowQualScore : 3 777 7 7 7 1111111111 1 4 3 00000 4 88 5 4 4 2 4 1111111111111 99999 4 4 4 5 6 6 6 0
lowQualScore : . ... . . . .......... . . . ..... . .. . . . . . ............. ..... . . . . . . . .
lowQualScore : 3 333 0 0 3 7777777777 0 0 0 00000 0 00 0 0 0 5 0 5555555555555 55555 0 0 0 0 0 0 0 0
consensus : CACTGAATTTGCTTGTCACAGATTGTTATTGCCCCTAAGTCTGCCCATTACAAAGTCCAAGTTGTCAGGTATATTACAATTCCAGTTGATTTGTATTTATATGGATTGATTGGTTCATA-CCT---TCAAAAACATTTTTTTCATATATCATTTCTGCCTCTCATTATACAAGAAAATAGCATTTTTAGACAAACACCTATACCGGACGCATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGCAGACAACTGCTTACAAAAAGTTAATGTTTAAACCTGCTGCATGTTAATGTTGTAAATTTCCTATCATTTTTAAAGACATTGAAAAATGTACATTG-----CATTGCAATGCATCAACTGTTTTGTTTACTGTTACAGGCAAATGCCANTGGGAAGAAGCTTGGAGAGTATTTTAGACCNTGGACTGGTTCTATACTGTCTTNATGNNGCTGGGGGTGCCTGTCTTCAATTTGAGAATCCAGTAGACAACTAGACTGANCTAGATGCTTGTTTTATCAGACAATTATTTGGCGTGTTCTAGAGATCTTGTGCTGTGAGGAAAAGTGGGAAANGCTGGTAGACATAGCCTTGAGGTTNAATGCCCTCACAAAGTAAGATATTTTTCTANATGCTGGATATATATTCTATATATATATATATATATATACTTGTTAATGATGAAGTATAAAATTGCACACAGATATTCAAATTTATCGCTTNTTATCAACAGTNAATACTTCGGTACTTCTCTCATACATTGTCCTTATTAAATTGCCCTTAATTATCAACTGTCCNCCATCTTCAGCCAGCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTTCCTACCACCAATAGTTGCCATACCCATACATCTCCAGTTATAAGA-GATCACACTAAGTGGTAATATACTAGTTACCCATTTATTAGT
Reference ( gi|1 ) : CACTGAATTTGCTTGTCACAGATTGTTATTGCCCCTAAGTCTGCCCATTACAAAGTCCAAGTTGTCAGGTATATTACAATTCCAGTTGATTTGTATTTATATGGATTGATTGGTTCATA-CCTGAATCAAAAACATTTTTTTCATATATCATTTCTGCCTCTCATTATACAAGAAAATAGCATTTTTAGTCAAACACCTATACCGGACGCATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGCAGACAACTGCTTACAAAAAGTTAATGTTTAAACCTGCTGCAAGTTAATGTTGTAAATTTCCTATCATTTTTAAAGACATTGAAAAATGTACATTGCATTG-----CAATGCATCAACTATTTTGTTTACTGTTACAGGCAAATGCCAATGGGAAGAAGCTTGGAGAGTATTTTAGACCTTGGACTGGTTCTATA-----TTAATGAAGCGGGGGGTGCCTGTCTTCAATTTGAGAATCCAGTAGACAACTAGACTGAACTAGATGCTTGTTTTATCAGACAATTATTTGGCGTGTTCTAGAGATCTTGTGCTGTGAGGAAAAGTGGGAAATGCTGGTAGACATAGCCTTGAGGTTGAATGCCCTCACAAAGTAAGATATTTTTCTATATGCTGGATATATATTCTATATATATATATATATATATACTTGT--AT-ATGAAGTATAAAATTGCACACAAATATTCAAATTTATTGCTTATTATCAACAGTTAATACTTCGGTACTTTTCTCATACATTGTCCTTATTAAATTGCCCTTAATTATCAATTGTCCACCATCTTCATCCAGCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTTCCTACCACCAATAGTTACCATACCCGTACATCTCCAGTTATAAAAAGATCACACTAAGTGGTAATATACTAGTTACCCATTTATTAGTA
gi|4 : CACTGAATTTGCTTGTCACAGATTGTTACTGCCCCTAAGTCTGCCCATTACAAAGTCCAAGTTGTCAGGTATATTACAATTCCAGTTGATTTGTATTTATATGGATTGATTGGTTCATA-CCTTC-TCAAAAACATTTTTTTCATATATCATTTCTGCCTCTCATTATACAAGAAAATAGTATTTTTAGACAAACACCTATACCGGACGCAT
gi|2 : gggggggcataaattCACTGAATTTGCTTGTCACAGATTGTTATGGCCCCTAATTCTGCCCATTACAAAGTCCAAGTTGTCAGGTATATTACAATTACAATTGATTTGTATTTATATGGATTGATAGGTTCATATTCT--CTCAAAAACATTATTTCCATAGATCATTTCTGCCACTCAATATACAAGAAAATAGCATTTTTAGACAAACATCTATACTGAATGCATnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntgcagacaactgcttacaaaaagttaatgtttaaacctgctgcatgttaatgttgtaaatttcctatcatttttaaagacattgaaaaatgtacattgcattgcaatgcatcaattgttttgtttactgttacatgcaaatgccaatgggaagaagcttagagagtattttagaccttggactggttctatattaatgaagctgggggtgcctgtcttcaatttgagaatccagtagacaactagactgaa
gi|16 : gtggggacataaattCACTGAATTTGCTTGTCnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngtgtgatgttgcaaagacattttcatgcagacaactgcttacaaaaagtaaatatctaaacctgctgcatgttaattttgtaaatttcctgtcattttttaaggttttgaaaaacggttttgtttattgttacaggcaaatgccattgggaagaagcttgaagagtattttaaaccgtggactggttctatactgtctttatgttgctgggggtgcctgacaattatttggcatgttctagagatcttgtactatgaggaaaagtaggaaaagctggtagacatagccttgagattcaatgccctcacaaagtaagatatttttctaaatgctgaatatatattctatataatacttgttaatgatgaagtataaaattgcacacagatattcaaatttatcactttttatcaacagtaaatacttcagtatttctctcatacattgtccttattaaattgcccttaattatcaactgtcttccatcttcagccagc
gi|5 : aaagcagggaacataattACTGAATTTGCTTGTCACAGATTGTTATTGCCCCTAAGTCTGCCCATTACAAAGTCCAAGTTGTCAGGTATATTACAATTCCAGTTGATTTGTATTTATATGGATTGATTGGTTCATA-CCTGAATCAAAAACATTTTTTTCATATATCATTTCTGCCTCTCATTATACAAGAAAATAGCATTTTTAGACAAACACCTATACCGGACGCAT
gi|4 : TGCAGACAACTGCTTACAAAAAGTTAATGTTTAAACCTGCTGCATGTTAATGTTGTAAATTTCCTATCATTTTTAAAGACATTGAAAAATGTACATTG-----CATTGCAATGCATCAATTGTTTTGTTTACTGTTACATGCAAATGCCAATGGGAAGAAGCTTAGAGAGTATTTTAGACCTTGGACTGGTTCTATA-----TTAATGAAGCTGGGGGTGCCTGTCTTCAATTTGAGAATCCAGTAGACAACTAGACTGAAnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntgcagacaactgcttacaaaaagttaatgtttaaacctgctgcatgttaatgttgtaaatttcctatcatttttaaagacattgaaaaatgtacattgcattgcaatgcatcaactattttgtttactgttacaggcaaatg
gi|2 : gggggggcataaattcactgaatttgcttgtcacagattgttactgcccctaagtctgcccattacaaagtccaagttgtcaggtatattacaattccagttgatttgtatttatatggattgattggttcataccttctcaaaaacatttttttcatatatcatttctgcctctcattatacaagaaaatagtatttttagacaaacacctataccggacgcatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnTGCAGACAACTGCTTACAAAAAGTAAATATCTAAACCTGCTGCATGTTAATTTTGTAAATTTCCTGTCATTTTTTAAGGTTTTGAAA------------------------------AACGGTTTTGTTTATTGTTACAGGCAAATGCCATTGGGAAGAAGCTTGAAGAGTATTTTAAACCGTGGACTGGTTCTATACTGTCTTTATGTTGCTGGGGGTGCCTG
gi|5 : gtggggacataaattcactgaatttgcttgtcacagattgttatggcccctaattctgcccattacaaagtccaagttgtcaggtatattacaattacaattgatttgtatttatatggattgataggttcatattctctcaaaaacattatttccatagatcatttctgccactcaatatacaagaaaatagcatttttagacaaacatctatactgaatgcatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngtgtgatgttgcaaagacattttcaTGCAGACAACTGCTTACAAAAAGTTAATGTTTAAACCTGCTGCATGTTAATGTTGTAAATTTCCTATCATTTTTAAAGACATTGAAAAATGTACATTG-----CATTGCAATGCATCAACTATTTTGTTTACTGTTACAGGCAAATGacaattatttggcatgttctagagatcttgtactatgaggaaaagtaggaaaagctggtagacatagccttgagattcaatgccctcacaaagtaagatatttttctaaatgctgaatatatattctatataatacttgttaatgatgaagtataaaattgcacacagatattcaaatttatcactttttatcaacagtaaatacttcagtatttctctcatacattgtccttattaaattgcccttaattatcaactgtcttccatcttcagccagc
gi|3 : actgaatttgcttgtcacagattgttattgcccctaagtctgcccattacaaagtccaagttgtcaggtatattacaattccagttgatttgtatttatatggattgattggttcatacctgaatcaaaaacatttttttcatatatcatttctgcctctcattatacaagaaaatagcatttttagacaaacacctataccggacgcatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnCCTGTCTTCAATTTGAGAATCCAGTAGACAACTAGACTGATCTAGATGCTTGTTTTATCAGACAATTATTTGGCGTGTTCTAGAGATCTTGTGCTGTGAGGAAAAGTGGGAAATGCTGGTAGACATAGCCTTGAGGTTGAATGCCCTCACAAAGTAAGATATTTTTCTATATGCTGGATATATATTCTATATATATATATATATATATACTTGT--AT-ATGAAGTATAAAATTGCACACAAATATTCAAATTTATTGCTTATTATCAACAGTTAATACTTCGGTACTTTTCTCATACATTGTCCTTATTAAATTGCCCTTAATTATCAATTGTCCACCATCTTCAGCCAGCA
gi|2 : GACAATTATTTGGCATGTTCTAGAGATCTTGTACTATGAGGAAAAGTAGGAAAAGCTGGTAGACATAGCCTTGAGATTCAATGCCCTCACAAAGTAAGATATTTTTCTAAATGCTGAATATATATTCTATATA-------------ATACTTGTTAATGATGAAGTATAAAATTGCACACAGATATTCAAATTTATCACTTTTTATCAACAGTAAATACTTCAGTATTTCTCTCATACATTGTCCTTATTAAATTGCCCTTAATTATCAACTGTCTTCCATCTTCAGCCAGCnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncttcctaccaccaatagttaccatacccgtacatctccagttataaaaagatcacactaagtggtaatatactagttacccatttattagta
gi|6 : gtggggacataaattcactgaatttgcttgtcacagattgttatggcccctaattctgcccattacaaagtccaagttgtcaggtatattacaattacaattgatttgtatttatatggattgataggttcatattctctcaaaaacattatttccatagatcatttctgccactcaatatacaagaaaatagcatttttagacaaacatctatactgaatgcatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngtgtgatgttgcaaagacattttcatgcagacaactgcttacaaaaagtaaatatctaaacctgctgcatgttaattttgtaaatttcctgtcattttttaaggttttgaaaaacggttttgtttattgttacaggcaaatgccattgggaagaagcttgaagagtattttaaaccgtggactggttctatactgtctttatgttgctgggggtgcctCTTCCTACCACCAATAGTTGCCATACCCATACATCTCCAGTTATAAGA-GATCACACTAAGTGGTAATATACTAGTTACCCATTTATTAGT
13 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|7 ): GGGGGTTTTGGTGCAATAACTTCGGAAACCCTAATTCAATTCTTTTGAAAACAAGTGGGGGACATAAATTCACTGAATTTGCTT
Unaligned ( gi|8 ): AAAAATGTCTGAATCACATATTTTGAAAAAAGCGGGGAACATAAATTCACTAAATTTGCTTGTTA
Unaligned ( gi|9 ): CTTGAATCAAATCTTTTAAAAAAGAGAGGGACATCAATTTACTGAATTTGCTTGT
Unaligned ( gi|10 ): GGGGGACATAAATTCACAGAATTTGCTTGCTATAATTTGCTTATAGCTTCTC
Unaligned ( gi|11 ): AAGTGGGGGACATAAACTCACTGAATTTGCTTGTTAT
Unaligned ( gi|12 ): AAAGTGGAAGACATAAATTCCCTGAATTTGCTTGTTT
Unaligned ( gi|13 ): AAGTGGGGGACATAAATTCGCTGAATATGCTTGTTA
Unaligned ( gi|14 ): ATAATTTCAAAACCGTAGTTTGGAAAACCTTTATTC
Unaligned ( gi|15 ): AGCGAGGGACATAAATTCCCTGAATTTGCTTGTTA
Unaligned ( gi|17 ): AAGCGGGGGACACAAATTCACAGAATTTGCTTGT
Unaligned ( gi|18 ): AGCGGGGACATAAATTCACTGAATTTGCTTCTTT
Unaligned ( gi|19 ): AAGCGGGGGACATAATTTCCCTGAATTTGCTTG
Unaligned ( gi|20 ): GGGACATAAATTCACTGAATTTGCTTGTTA
Alignments
lowQualScore : 11 333 11 3333333333 55555 33333 2
lowQualScore : 33 555 33 3 9999999999 0 1 1 00000 1 22 1 1 1 1 7 66666 0 0 1 1 0 0 1 0 1 0 6
lowQualScore : .. ... .. . .......... . . . ..... . .. . . . . . ..... . . . . . . . . . . .
lowQualScore : 88 000 88 2 0000000000 2 0 0 77777 0 00 0 0 0 0 3 00000 7 7 0 0 7 7 0 7 0 7 7
consensus : CACTGAATTTGCTTGTCACAGATTGTTATTGCCCCTAAGTCTGCCCATTACAAAGTCCAAGTTGTCAGGTATATTACAATTCCAGTTGATTTGTATTTATATGGATTGATTGGTTCATA--CCTGAATC--AAAAACATTTTTTTCATATATCATTTCTGCCTCTCATTATACAAGAAAATAGCATTTTTAGACAAACACCTATACCGGACGCATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGCAGACAACTGCTTACAAAAAGTTAATGTTTAAACCTGCTGCATGTTAATGTTGTAAATTTCCTATCATTTTTAAAGACATTGAAAAATGTACATTG-----CATTGCAATGCATCAACTGTTTTGTTTACTGTTACAGGCAAATGCCAATGGGAAGAAGCTTGGAGAGTATTTTAGACCTTGGACTGGTTCTATA-----TTAATGAAGCTGGGGGTGCCTGTCTTCAATTTGAGAATCCAGTAGACAACTAGACTGANCTAGATGCTTGTTTTATCAGACAATTATTTGGCGTGTTCTAGAGATCTTGTGCTGTGAGGAAAAGTGGGAAATGCTGGTAGACATAGCCTTGAGGTTGAATGCCCTCACAAAGTAAGATATTTTTCTATATGCTGGATATATATTCTATATATATATATATATATATACTTGT--AT-ATGAAGTATAAAATTGCACACAAATATTCAAATTTATCGCTTATTATCAACAGTTAATACTTCGGTACTTTTCTCATACATTGTCCTTATTAAATTGCCCTTAATTATCAATTGTCCACCATCTTCAGCCAGCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTTCCTACCACCAATAGTTACCATACCCGTACATCTCCAGTTATAAAAAGATCACACTAAGTGGTAATATACTAGTTACCCATTTATTAGT
Reference ( family-4218 ) : CACTGAATTTGCTTGTCACAGATTGTTATTGCCCCTAAGTCTGCCCATTACAAAGTCCAAGTTGTCAGGTATATTACAATTCCAGTTGATTTGTATTTATATGGATTGATTGGTTCATA--CCT---TC--AAAAACATTTTTTTCATATATCATTTCTGCCTCTCATTATACAAGAAAATAGCATTTTTAGACAAACACCTATACCGGACGCATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGCAGACAACTGCTTACAAAAAGTTAATGTTTAAACCTGCTGCATGTTAATGTTGTAAATTTCCTATCATTTTTAAAGACATTGAAAAATGTACATTG-----CATTGCAATGCATCAACTGTTTTGTTTACTGTTACAGGCAAATGCCANTGGGAAGAAGCTTGGAGAGTATTTTAGACCNTGGACTGGTTCTATACTGTCTTNATGNNGCTGGGGGTGCCTGTCTTCAATTTGAGAATCCAGTAGACAACTAGACTGANCTAGATGCTTGTTTTATCAGACAATTATTTGGCGTGTTCTAGAGATCTTGTGCTGTGAGGAAAAGTGGGAAANGCTGGTAGACATAGCCTTGAGGTTNAATGCCCTCACAAAGTAAGATATTTTTCTANATGCTGGATATATATTCTATATATATATATATATATATACTTGTTAATGATGAAGTATAAAATTGCACACAGATATTCAAATTTATCGCTTNTTATCAACAGTNAATACTTCGGTACTTCTCTCATACATTGTCCTTATTAAATTGCCCTTAATTATCAACTGTCCNCCATCTTCAGCCAGCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTTCCTACCACCAATAGTTGCCATACCCATACATCTCCAGTTATAAGA-GATCACACTAAGTGGTAATATACTAGTTACCCATTTATTAGT
gi|1 : CACTGAATTTGCTTGTCACAGATTGTTATTGCCCCTAAGTCTGCCCATTACAAAGTCCAAGTTGTCAGGTATATTACAATTCCAGTTGATTTGTATTTATATGGATTGATTGGTTCATA--CCTGAATC--AAAAACATTTTTTTCATATATCATTTCTGCCTCTCATTATACAAGAAAATAGCATTTTTAGTCAAACACCTATACCGGACGCAT
gi|1 : TGCAGACAACTGCTTACAAAAAGTTAATGTTTAAACCTGCTGCAAGTTAATGTTGTAAATTTCCTATCATTTTTAAAGACATTGAAAAATGTACATTG-----CATTGCAATGCATCAACTATTTTGTTTACTGTTACAGGCAAATGCCAATGGGAAGAAGCTTGGAGAGTATTTTAGACCTTGGACTGGTTCTATA-----TTAATGAAGCGGGGGGTGCCTGTCTTCAATTTGAGAATCCAGTAGACAACTAGACTGAACTAGATGCTTGTTTTATCAGACAATTATTTGGCGTGTTCTAGAGATCTTGTGCTGTGAGGAAAAGTGGGAAATGCTGGTAGACATAGCCTTGAGGTTGAATGCCCTCACAAAGTAAGATATTTTTCTATATGCTGGATATATATTCTATATATATATATATATATATACTTGT--AT-ATGAAGTATAAAATTGCACACAAATATTCAAATTTATTGCTTATTATCAACAGTTAATACTTCGGTACTTTTCTCATACATTGTCCTTATTAAATTGCCCTTAATTATCAATTGTCCACCATCTTCATCCAGCAnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntgcagacaactgcttacaaaaagttaatgtttaaacctgctgcaagttaatgttgtaaatttcctatcatttttaaagacattgaaaaatgtacattgcattgcaatgcatcaactattttgtttactgttacaggcaaatgccaatgggaagaagcttggagagtattttagaccttggactggttctatattaatgaagcggggggtgcctgtcttcaatttgagaatccagtagacaactagactgaactagatgcttgttttatcagacaattatttggcgtgttctagagatcttgtgctgtgaggaaaagtgggaaatgctggtagacatagccttgaggttgaatgccctcacaaagtaagatatttttctatatgctggatatatattctatatatatatatatatatatacttgtatatgaagtataaaattgcacacaaatattcaaatttattgcttattatcaacagttaatacttcggtacttttctcatacattgtccttattaaattgcccttaattatcaattgtccaccatcttcatccagcannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncttcctaccaccaatagttaccatacccgtacatctccagttataaaaagatcacactaagtggtaatatactagttacccatttattagta
gi|1 : cactgaatttgcttgtcacagattgttattgcccctaagtctgcccattacaaagtccaagttgtcaggtatattacaattccagttgatttgtatttatatggattgattggttcatacctgaatcaaaaacatttttttcatatatcatttctgcctctcattatacaagaaaatagcatttttagtcaaacacctataccggacgcatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnCTTCCTACCACCAATAGTTACCATACCCGTACATCTCCAGTTATAAAAAGATCACACTAAGTGGTAATATACTAGTTACCCATTTATTAGTnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncttcctaccaccaatagttaccatacccgtacatctccagttataaaaagatcacactaagtggtaatatactagttacccatttattagta
gi|16 : cactgaatttgcttgtcacagattgttattgcccctaagtctgcccattacaaagtccaagttgtcaggtatattacaattccagttgatttgtatttatatggattgattggttcatacctgaatcaaaaacatttttttcatatatcatttctgcctctcattatacaagaaaatagcatttttagtcaaacacctataccggacgcatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntgcagacaactgcttacaaaaagttaatgtttaaacctgctgcaagttaatgttgtaaatttcctatcatttttaaagacattgaaaaatgtacattgcattgcaatgcatcaactattttgtttactgttacaggcaaatgccaatgggaagaagcttggagagtattttagaccttggactggttctatattaatgaagcggggggtgcctgtcttcaatttgagaatccagtagacaactagactgaactagatgcttgttttatcagacaattatttggcgtgttctagagatcttgtgctgtgaggaaaagtgggaaatgctggtagacatagccttgaggttgaatgccctcacaaagtaagatatttttctatatgctggatatatattctatatatatatatatatatatacttgtatatgaagtataaaattgcacacaaatattcaaatttattgcttattatcaacagttaatacttcggtacttttctcatacattgtccttattaaattgcccttaattatcaattgtccaccatcttcatccagcannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnCACTGAATTTGCTTGTCa
gi|2 : aaagcagggaacataattCACTGAATTTGCTTGTCACAGATTGTTATGGCCCCTAATTCTGCCCATTACAAAGTCCAAGTTGTCAGGTATATTACAATTACAATTGATTTGTATTTATATGGATTGATAGGTTCATATTCTC---TC--AAAAACATTATTTCCATAGATCATTTCTGCCACTCAATATACAAGAAAATAGCATTTTTAGACAAACATCTATACTGAATGCAT
gi|2 : gtggggacataaattTGCAGACAACTGCTTACAAAAAGTAAATATCTAAACCTGCTGCATGTTAATTTTGTAAATTTCCTGTCATTTTTTAAGGTTTTGAAAAACG------------------------------GTTTTGTTTATTGTTACAGGCAAATGCCATTGGGAAGAAGCTTGAAGAGTATTTTAAACCGTGGACTGGTTCTATACTGTCTTTATGTTGCTGGGGGTGCCTGnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngtgtgatgttgcaaagacattttcatgcagacaactgcttacaaaaagtaaatatctaaacctgctgcatgttaattttgtaaatttcctgtcattttttaaggttttgaaaaacggttttgtttattgttacaggcaaatgccattgggaagaagcttgaagagtattttaaaccgtggactggttctatactgtctttatgttgctgggggtgcctgacaattatttggcatgttctagagatcttgtactatgaggaaaagtaggaaaagctggtagacatagccttgagattcaatgccctcacaaagtaagatatttttctaaatgctgaatatatattctatataatacttgttaatgatgaagtataaaattgcacacagatattcaaatttatcactttttatcaacagtaaatacttcagtatttctctcatacattgtccttattaaattgcccttaattatcaactgtcttccatcttcagccagc
gi|2 : gtggggacataaattcactgaatttgcttgtcacagattgttatggcccctaattctgcccattacaaagtccaagttgtcaggtatattacaattacaattgatttgtatttatatggattgataggttcatattctctcaaaaacattatttccatagatcatttctgccactcaatatacaagaaaatagcatttttagacaaacatctatactgaatgcatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngtgtgatgttgcaaagacattttcaGACAATTATTTGGCATGTTCTAGAGATCTTGTACTATGAGGAAAAGTAGGAAAAGCTGGTAGACATAGCCTTGAGATTCAATGCCCTCACAAAGTAAGATATTTTTCTAAATGCTGAATATATATTCTATATA-------------ATACTTGTTAATGATGAAGTATAAAATTGCACACAGATATTCAAATTTATCACTTTTTATCAACAGTAAATACTTCAGTATTTCTCTCATACATTGTCCTTATTAAATTGCCCTTAATTATCAACTGTCTTCCATCTTCAGCCAGCacaattatttggcatgttctagagatcttgtactatgaggaaaagtaggaaaagctggtagacatagccttgagattcaatgccctcacaaagtaagatatttttctaaatgctgaatatatattctatataatacttgttaatgatgaagtataaaattgcacacagatattcaaatttatcactttttatcaacagtaaatacttcagtatttctctcatacattgtccttattaaattgcccttaattatcaactgtcttccatcttcagccagc
gi|3 : gtggggacataaattcactgaatttgcttgtcacagattgttatggcccctaattctgcccattacaaagtccaagttgtcaggtatattacaattacaattgatttgtatttatatggattgataggttcatattctctcaaaaacattatttccatagatcatttctgccactcaatatacaagaaaatagcatttttagacaaacatctatactgaatgcatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngtgtgatgttgcaaagacattttcatgcagacaactgcttacaaaaagtaaatatctaaacctgctgcatgttaattttgtaaatttcctgtcattttttaaggttttgaaaaacggttttgtttattgttacaggcaaatgccattgggaagaagcttgaagagtattttaaaccgtggactggttctatactgtctttatgttgctgggggtgcctCCTGTCTTCAATTTGAGAATCCAGTAGACAACTAGACTGATCTAGATGCTTGTTTTATCAGACAATTATTTGGCGTGTTCTAGAGATCTTGTGCTGTGAGGAAAAGTGGGAAATGCTGGTAGACATAGCCTTGAGGTTGAATGCCCTCACAAAGTAAGATATTTTTCTATATGCTGGATATATATTCTATATATATATATATATATATACTTGT--AT-ATGAAGTATAAAATTGCACACAAATATTCAAATTTATTGCTTATTATCAACAGTTAATACTTCGGTACTTTTCTCATACATTGTCCTTATTAAATTGCCCTTAATTATCAATTGTCCACCATCTTCAGCCAGCA
gi|3 : CTTCCTACCACCAATAGTTACCATACCCGTACATCTCCAGTTATAAAAAGATCACACTAAGTGGTAATATACTAGTTACCCATTTATTAGTnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncttcctaccaccaatagttaccatacccgtacatctccagttataaaaagatcacactaagtggtaatatactagttacccatttattagta
gi|4 : cctgtcttcaatttgagaatccagtagacaactagactgatctagatgcttgttttatcagacaattatttggcgtgttctagagatcttgtgctgtgaggaaaagtgggaaatgctggtagacatagccttgaggttgaatgccctcacaaagtaagatatttttctatatgctggatatatattctatatatatatatatatatatacttgtatatgaagtataaaattgcacacaaatattcaaatttattgcttattatcaacagttaatacttcggtacttttctcatacattgtccttattaaattgcccttaattatcaattgtccaccatcttcagccagcannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnCACTGAATTTGCTTGTCACAGATTGTTACTGCCCCTAAGTCTGCCCATTACAAAGTCCAAGTTGTCAGGTATATTACAATTCCAGTTGATTTGTATTTATATGGATTGATTGGTTCATA--CCT---TCTCAAAAACATTTTTTTCATATATCATTTCTGCCTCTCATTATACAAGAAAATAGTATTTTTAGACAAACACCTATACCGGACGCATa
gi|4 : gggggggcataaattTGCAGACAACTGCTTACAAAAAGTTAATGTTTAAACCTGCTGCATGTTAATGTTGTAAATTTCCTATCATTTTTAAAGACATTGAAAAATGTACATTG-----CATTGCAATGCATCAATTGTTTTGTTTACTGTTACATGCAAATGCCAATGGGAAGAAGCTTAGAGAGTATTTTAGACCTTGGACTGGTTCTATA-----TTAATGAAGCTGGGGGTGCCTGTCTTCAATTTGAGAATCCAGTAGACAACTAGACTGAnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntgcagacaactgcttacaaaaagttaatgtttaaacctgctgcatgttaatgttgtaaatttcctatcatttttaaagacattgaaaaatgtacattgcattgcaatgcatcaattgttttgtttactgttacatgcaaatgccaatgggaagaagcttagagagtattttagaccttggactggttctatattaatgaagctgggggtgcctgtcttcaatttgagaatccagtagacaactagactgaa
gi|5 : gggggggcataaattcactgaatttgcttgtcacagattgttactgcccctaagtctgcccattacaaagtccaagttgtcaggtatattacaattccagttgatttgtatttatatggattgattggttcataccttctcaaaaacatttttttcatatatcatttctgcctctcattatacaagaaaatagtatttttagacaaacacctataccggacgcatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnACTGAATTTGCTTGTCACAGATTGTTATTGCCCCTAAGTCTGCCCATTACAAAGTCCAAGTTGTCAGGTATATTACAATTCCAGTTGATTTGTATTTATATGGATTGATTGGTTCATA--CCTGAATC--AAAAACATTTTTTTCATATATCATTTCTGCCTCTCATTATACAAGAAAATAGCATTTTTAGACAAACACCTATACCGGACGCATa
gi|5 : TGCAGACAACTGCTTACAAAAAGTTAATGTTTAAACCTGCTGCATGTTAATGTTGTAAATTTCCTATCATTTTTAAAGACATTGAAAAATGTACATTGCATTG-----CAATGCATCAACTATTTTGTTTACTGTTACAGGCAAATGnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntgcagacaactgcttacaaaaagttaatgtttaaacctgctgcatgttaatgttgtaaatttcctatcatttttaaagacattgaaaaatgtacattgcattgcaatgcatcaactattttgtttactgttacaggcaaatg
gi|6 : actgaatttgcttgtcacagattgttattgcccctaagtctgcccattacaaagtccaagttgtcaggtatattacaattccagttgatttgtatttatatggattgattggttcatacctgaatcaaaaacatttttttcatatatcatttctgcctctcattatacaagaaaatagcatttttagacaaacacctataccggacgcatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnCTTCCTACCACCAATAGTTGCCATACCCATACATCTCCAGTTATAAGA-GATCACACTAAGTGGTAATATACTAGTTACCCATTTATTAGT
13 sequences could not be aligned to this reference sequence:
Unaligned ( gi|7 ): GGGGGTTTTGGTGCAATAACTTCGGAAACCCTAATTCAATTCTTTTGAAAACAAGTGGGGGACATAAATTCACTGAATTTGCTT
Unaligned ( gi|8 ): AAAAATGTCTGAATCACATATTTTGAAAAAAGCGGGGAACATAAATTCACTAAATTTGCTTGTTA
Unaligned ( gi|9 ): CTTGAATCAAATCTTTTAAAAAAGAGAGGGACATCAATTTACTGAATTTGCTTGT
Unaligned ( gi|10 ): GGGGGACATAAATTCACAGAATTTGCTTGCTATAATTTGCTTATAGCTTCTC
Unaligned ( gi|11 ): AAGTGGGGGACATAAACTCACTGAATTTGCTTGTTAT
Unaligned ( gi|12 ): AAAGTGGAAGACATAAATTCCCTGAATTTGCTTGTTT
Unaligned ( gi|13 ): AAGTGGGGGACATAAATTCGCTGAATATGCTTGTTA
Unaligned ( gi|14 ): ATAATTTCAAAACCGTAGTTTGGAAAACCTTTATTC
Unaligned ( gi|15 ): AGCGAGGGACATAAATTCCCTGAATTTGCTTGTTA
Unaligned ( gi|17 ): AAGCGGGGGACACAAATTCACAGAATTTGCTTGT
Unaligned ( gi|18 ): AGCGGGGACATAAATTCACTGAATTTGCTTCTTT
Unaligned ( gi|19 ): AAGCGGGGGACATAATTTCCCTGAATTTGCTTG
Unaligned ( gi|20 ): GGGACATAAATTCACTGAATTTGCTTGTTA
Alignments
lowQualScore : 1 222 9999999999 33333 22222 11 1 4
lowQualScore : 0 111 3 4444444444 0 33333 1 33333 88 3 0 6 6 6 0
lowQualScore : . ... . .......... . ..... . ..... .. . . . . . .
lowQualScore : 0 000 2 5555555555 2 33333 0 77777 33 3 7 0 0 0 0
consensus : CACTGAATTTGCTTGTCACAGATTGTTATTGCCCCTAAGTCTGCCCATTACAAAGTCCAAGTTGTCAGGTATATTACAATTCCAGTTGATTTGTATTTATATGGATTGATTGGTTCATA-CCTGAATCAAAAACATTTTTTTCATATATCATTTCTGCCTCTCATTATACAAGAAAATAGCATTTTTAGACAAACACCTATACCGGACGCATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGCAGACAACTGCTTACAAAAAGTTAATGTTTAAACCTGCTGCATGTTAATGTTGTAAATTTCCTATCATTTTTAAAGACATTGAAAAATGTACATTGCATTG-----CAATGCATCAACTGTTTTGTTTACTGTTACAGGCAAATGCCAATGGGAAGAAGCTTGGAGAGTATTTTAGACCTTGGACTGGTTCTATA-----TTAATGAAGCTGGGGGTGCCTGTCTTCAATTTGAGAATCCAGTAGACAACTAGACTGANCTAGATGCTTGTTTTATCAGACAATTATTTGGCGTGTTCTAGAGATCTTGTGCTGTGAGGAAAAGTGGGAAATGCTGGTAGACATAGCCTTGAGGTTGAATGCCCTCACAAAGTAAGATATTTTTCTATATGCTGGATATATATTCTATA--TATATATATATATATATACTTGT--AT-ATGAAGTATAAAATTGCACACAAATATTCAAATTTATCGCTTATTATCAACAGTTAATACTTCGGTACTTTTCTCATACATTGTCCTTATTAAATTGCCCTTAATTATCAATTGTCCACCATCTTCAGCCAGCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTTCCTACCACCAATAGTTGCCATACCCATACATCTCCAGTTATAAGA-GATCACACTAAGTGGTAATATACTAGTTACCCATTTATTAGT
Reference ( family-4218 ) : CACTGAATTTGCTTGTCACAGATTGTTATTGCCCCTAAGTCTGCCCATTACAAAGTCCAAGTTGTCAGGTATATTACAATTCCAGTTGATTTGTATTTATATGGATTGATTGGTTCATA-CCTGAATCAAAAACATTTTTTTCATATATCATTTCTGCCTCTCATTATACAAGAAAATAGCATTTTTAGACAAACACCTATACCGGACGCATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGCAGACAACTGCTTACAAAAAGTTAATGTTTAAACCTGCTGCATGTTAATGTTGTAAATTTCCTATCATTTTTAAAGACATTGAAAAATGTACATTG-----CATTGCAATGCATCAACTGTTTTGTTTACTGTTACAGGCAAATGCCAATGGGAAGAAGCTTGGAGAGTATTTTAGACCTTGGACTGGTTCTATA-----TTAATGAAGCTGGGGGTGCCTGTCTTCAATTTGAGAATCCAGTAGACAACTAGACTGANCTAGATGCTTGTTTTATCAGACAATTATTTGGCGTGTTCTAGAGATCTTGTGCTGTGAGGAAAAGTGGGAAATGCTGGTAGACATAGCCTTGAGGTTGAATGCCCTCACAAAGTAAGATATTTTTCTATATGCTGGATATATATTCTATA--TATATATATATATATATACTTGT--AT-ATGAAGTATAAAATTGCACACAAATATTCAAATTTATCGCTTATTATCAACAGTTAATACTTCGGTACTTTTCTCATACATTGTCCTTATTAAATTGCCCTTAATTATCAATTGTCCACCATCTTCAGCCAGCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTTCCTACCACCAATAGTTACCATACCCGTACATCTCCAGTTATAAAAAGATCACACTAAGTGGTAATATACTAGTTACCCATTTATTAGT
gi|1 : CACTGAATTTGCTTGTCACAGATTGTTATTGCCCCTAAGTCTGCCCATTACAAAGTCCAAGTTGTCAGGTATATTACAATTCCAGTTGATTTGTATTTATATGGATTGATTGGTTCATA-CCTGAATCAAAAACATTTTTTTCATATATCATTTCTGCCTCTCATTATACAAGAAAATAGCATTTTTAGTCAAACACCTATACCGGACGCAT
gi|1 : TGCAGACAACTGCTTACAAAAAGTTAATGTTTAAACCTGCTGCAAGTTAATGTTGTAAATTTCCTATCATTTTTAAAGACATTGAAAAATGTACATTG-----CATTGCAATGCATCAACTATTTTGTTTACTGTTACAGGCAAATGCCAATGGGAAGAAGCTTGGAGAGTATTTTAGACCTTGGACTGGTTCTATA-----TTAATGAAGCGGGGGGTGCCTGTCTTCAATTTGAGAATCCAGTAGACAACTAGACTGAACTAGATGCTTGTTTTATCAGACAATTATTTGGCGTGTTCTAGAGATCTTGTGCTGTGAGGAAAAGTGGGAAATGCTGGTAGACATAGCCTTGAGGTTGAATGCCCTCACAAAGTAAGATATTTTTCTATATGCTGGATATATATTCTATATA--TATATATATATATATACTTGT--AT-ATGAAGTATAAAATTGCACACAAATATTCAAATTTATTGCTTATTATCAACAGTTAATACTTCGGTACTTTTCTCATACATTGTCCTTATTAAATTGCCCTTAATTATCAATTGTCCACCATCTTCATCCAGCAnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntgcagacaactgcttacaaaaagttaatgtttaaacctgctgcaagttaatgttgtaaatttcctatcatttttaaagacattgaaaaatgtacattgcattgcaatgcatcaactattttgtttactgttacaggcaaatgccaatgggaagaagcttggagagtattttagaccttggactggttctatattaatgaagcggggggtgcctgtcttcaatttgagaatccagtagacaactagactgaactagatgcttgttttatcagacaattatttggcgtgttctagagatcttgtgctgtgaggaaaagtgggaaatgctggtagacatagccttgaggttgaatgccctcacaaagtaagatatttttctatatgctggatatatattctatatatatatatatatatatacttgtatatgaagtataaaattgcacacaaatattcaaatttattgcttattatcaacagttaatacttcggtacttttctcatacattgtccttattaaattgcccttaattatcaattgtccaccatcttcatccagcannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncttcctaccaccaatagttaccatacccgtacatctccagttataaaaagatcacactaagtggtaatatactagttacccatttattagta
gi|16 : cactgaatttgcttgtcacagattgttattgcccctaagtctgcccattacaaagtccaagttgtcaggtatattacaattccagttgatttgtatttatatggattgattggttcatacctgaatcaaaaacatttttttcatatatcatttctgcctctcattatacaagaaaatagcatttttagtcaaacacctataccggacgcatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnCACTGAATTTGCTTGTCnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncttcctaccaccaatagttaccatacccgtacatctccagttataaaaagatcacactaagtggtaatatactagttacccatttattagta
gi|2 : aaagcagggaacataattCACTGAATTTGCTTGTCACAGATTGTTATGGCCCCTAATTCTGCCCATTACAAAGTCCAAGTTGTCAGGTATATTACAATTACAATTGATTTGTATTTATATGGATTGATAGGTTCATATTCT--CTCAAAAACATTATTTCCATAGATCATTTCTGCCACTCAATATACAAGAAAATAGCATTTTTAGACAAACATCTATACTGAATGCAT
gi|2 : gtggggacataaattTGCAGACAACTGCTTACAAAAAGTAAATATCTAAACCTGCTGCATGTTAATTTTGTAAATTTCCTGTCATTTTTTAAGGTTTTGAAAAACG------------------------------GTTTTGTTTATTGTTACAGGCAAATGCCATTGGGAAGAAGCTTGAAGAGTATTTTAAACCGTGGACTGGTTCTATACTGTCTTTATGTTGCTGGGGGTGCCTGnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngtgtgatgttgcaaagacattttcatgcagacaactgcttacaaaaagtaaatatctaaacctgctgcatgttaattttgtaaatttcctgtcattttttaaggttttgaaaaacggttttgtttattgttacaggcaaatgccattgggaagaagcttgaagagtattttaaaccgtggactggttctatactgtctttatgttgctgggggtgcctgacaattatttggcatgttctagagatcttgtactatgaggaaaagtaggaaaagctggtagacatagccttgagattcaatgccctcacaaagtaagatatttttctaaatgctgaatatatattctatataatacttgttaatgatgaagtataaaattgcacacagatattcaaatttatcactttttatcaacagtaaatacttcagtatttctctcatacattgtccttattaaattgcccttaattatcaactgtcttccatcttcagccagc
gi|2 : gtggggacataaattcactgaatttgcttgtcacagattgttatggcccctaattctgcccattacaaagtccaagttgtcaggtatattacaattacaattgatttgtatttatatggattgataggttcatattctctcaaaaacattatttccatagatcatttctgccactcaatatacaagaaaatagcatttttagacaaacatctatactgaatgcatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngtgtgatgttgcaaagacattttcaGACAATTATTTGGCATGTTCTAGAGATCTTGTACTATGAGGAAAAGTAGGAAAAGCTGGTAGACATAGCCTTGAGATTCAATGCCCTCACAAAGTAAGATATTTTTCTAAATGCTGAATATATATTCTATA--TA-------------ATACTTGTTAATGATGAAGTATAAAATTGCACACAGATATTCAAATTTATCACTTTTTATCAACAGTAAATACTTCAGTATTTCTCTCATACATTGTCCTTATTAAATTGCCCTTAATTATCAACTGTCTTCCATCTTCAGCCAGCacaattatttggcatgttctagagatcttgtactatgaggaaaagtaggaaaagctggtagacatagccttgagattcaatgccctcacaaagtaagatatttttctaaatgctgaatatatattctatataatacttgttaatgatgaagtataaaattgcacacagatattcaaatttatcactttttatcaacagtaaatacttcagtatttctctcatacattgtccttattaaattgcccttaattatcaactgtcttccatcttcagccagc
gi|3 : gtggggacataaattcactgaatttgcttgtcacagattgttatggcccctaattctgcccattacaaagtccaagttgtcaggtatattacaattacaattgatttgtatttatatggattgataggttcatattctctcaaaaacattatttccatagatcatttctgccactcaatatacaagaaaatagcatttttagacaaacatctatactgaatgcatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngtgtgatgttgcaaagacattttcatgcagacaactgcttacaaaaagtaaatatctaaacctgctgcatgttaattttgtaaatttcctgtcattttttaaggttttgaaaaacggttttgtttattgttacaggcaaatgccattgggaagaagcttgaagagtattttaaaccgtggactggttctatactgtctttatgttgctgggggtgcctCCTGTCTTCAATTTGAGAATCCAGTAGACAACTAGACTGATCTAGATGCTTGTTTTATCAGACAATTATTTGGCGTGTTCTAGAGATCTTGTGCTGTGAGGAAAAGTGGGAAATGCTGGTAGACATAGCCTTGAGGTTGAATGCCCTCACAAAGTAAGATATTTTTCTATATGCTGGATATATATTCTATA--TATATATATATATATATACTTGT--AT-ATGAAGTATAAAATTGCACACAAATATTCAAATTTATTGCTTATTATCAACAGTTAATACTTCGGTACTTTTCTCATACATTGTCCTTATTAAATTGCCCTTAATTATCAATTGTCCACCATCTTCAGCCAGCA
gi|4 : CACTGAATTTGCTTGTCACAGATTGTTACTGCCCCTAAGTCTGCCCATTACAAAGTCCAAGTTGTCAGGTATATTACAATTCCAGTTGATTTGTATTTATATGGATTGATTGGTTCATA-CCTTC-TCAAAAACATTTTTTTCATATATCATTTCTGCCTCTCATTATACAAGAAAATAGTATTTTTAGACAAACACCTATACCGGACGCATnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncttcctaccaccaatagttaccatacccgtacatctccagttataaaaagatcacactaagtggtaatatactagttacccatttattagta
gi|4 : gggggggcataaattTGCAGACAACTGCTTACAAAAAGTTAATGTTTAAACCTGCTGCATGTTAATGTTGTAAATTTCCTATCATTTTTAAAGACATTGAAAAATGTACATTGCATTG-----CAATGCATCAATTGTTTTGTTTACTGTTACATGCAAATGCCAATGGGAAGAAGCTTAGAGAGTATTTTAGACCTTGGACTGGTTCTATA-----TTAATGAAGCTGGGGGTGCCTGTCTTCAATTTGAGAATCCAGTAGACAACTAGACTGAnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntgcagacaactgcttacaaaaagttaatgtttaaacctgctgcatgttaatgttgtaaatttcctatcatttttaaagacattgaaaaatgtacattgcattgcaatgcatcaattgttttgtttactgttacatgcaaatgccaatgggaagaagcttagagagtattttagaccttggactggttctatattaatgaagctgggggtgcctgtcttcaatttgagaatccagtagacaactagactgaa
gi|5 : gggggggcataaattcactgaatttgcttgtcacagattgttactgcccctaagtctgcccattacaaagtccaagttgtcaggtatattacaattccagttgatttgtatttatatggattgattggttcataccttctcaaaaacatttttttcatatatcatttctgcctctcattatacaagaaaatagtatttttagacaaacacctataccggacgcatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnACTGAATTTGCTTGTCACAGATTGTTATTGCCCCTAAGTCTGCCCATTACAAAGTCCAAGTTGTCAGGTATATTACAATTCCAGTTGATTTGTATTTATATGGATTGATTGGTTCATA-CCTGAATCAAAAACATTTTTTTCATATATCATTTCTGCCTCTCATTATACAAGAAAATAGCATTTTTAGACAAACACCTATACCGGACGCATa
gi|5 : TGCAGACAACTGCTTACAAAAAGTTAATGTTTAAACCTGCTGCATGTTAATGTTGTAAATTTCCTATCATTTTTAAAGACATTGAAAAATGTACATTGCATTG-----CAATGCATCAACTATTTTGTTTACTGTTACAGGCAAATGnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntgcagacaactgcttacaaaaagttaatgtttaaacctgctgcatgttaatgttgtaaatttcctatcatttttaaagacattgaaaaatgtacattgcattgcaatgcatcaactattttgtttactgttacaggcaaatg
gi|6 : actgaatttgcttgtcacagattgttattgcccctaagtctgcccattacaaagtccaagttgtcaggtatattacaattccagttgatttgtatttatatggattgattggttcatacctgaatcaaaaacatttttttcatatatcatttctgcctctcattatacaagaaaatagcatttttagacaaacacctataccggacgcatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnCTTCCTACCACCAATAGTTGCCATACCCATACATCTCCAGTTATAAGA-GATCACACTAAGTGGTAATATACTAGTTACCCATTTATTAGT
13 sequences could not be aligned to this reference sequence:
Unaligned ( gi|7 ): GGGGGTTTTGGTGCAATAACTTCGGAAACCCTAATTCAATTCTTTTGAAAACAAGTGGGGGACATAAATTCACTGAATTTGCTT
Unaligned ( gi|8 ): AAAAATGTCTGAATCACATATTTTGAAAAAAGCGGGGAACATAAATTCACTAAATTTGCTTGTTA
Unaligned ( gi|9 ): CTTGAATCAAATCTTTTAAAAAAGAGAGGGACATCAATTTACTGAATTTGCTTGT
Unaligned ( gi|10 ): GGGGGACATAAATTCACAGAATTTGCTTGCTATAATTTGCTTATAGCTTCTC
Unaligned ( gi|11 ): AAGTGGGGGACATAAACTCACTGAATTTGCTTGTTAT
Unaligned ( gi|12 ): AAAGTGGAAGACATAAATTCCCTGAATTTGCTTGTTT
Unaligned ( gi|13 ): AAGTGGGGGACATAAATTCGCTGAATATGCTTGTTA
Unaligned ( gi|14 ): ATAATTTCAAAACCGTAGTTTGGAAAACCTTTATTC
Unaligned ( gi|15 ): AGCGAGGGACATAAATTCCCTGAATTTGCTTGTTA
Unaligned ( gi|17 ): AAGCGGGGGACACAAATTCACAGAATTTGCTTGT
Unaligned ( gi|18 ): AGCGGGGACATAAATTCACTGAATTTGCTTCTTT
Unaligned ( gi|19 ): AAGCGGGGGACATAATTTCCCTGAATTTGCTTG
Unaligned ( gi|20 ): GGGACATAAATTCACTGAATTTGCTTGTTA
Alignments
lowQualScore : 1 222 9999999999 33333 22222 11 1 2
lowQualScore : 0 111 3 4444444444 0 33333 1 33333 88 3 0 0 1 0 6
lowQualScore : . ... . .......... . ..... . ..... .. . . . . . .
lowQualScore : 0 000 2 5555555555 2 33333 0 77777 33 3 7 7 0 7 7
consensus : CACTGAATTTGCTTGTCACAGATTGTTATTGCCCCTAAGTCTGCCCATTACAAAGTCCAAGTTGTCAGGTATATTACAATTCCAGTTGATTTGTATTTATATGGATTGATTGGTTCATA-CCTGAATCAAAAACATTTTTTTCATATATCATTTCTGCCTCTCATTATACAAGAAAATAGCATTTTTAGACAAACACCTATACCGGACGCATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGCAGACAACTGCTTACAAAAAGTTAATGTTTAAACCTGCTGCATGTTAATGTTGTAAATTTCCTATCATTTTTAAAGACATTGAAAAATGTACATTGCATTG-----CAATGCATCAACTGTTTTGTTTACTGTTACAGGCAAATGCCAATGGGAAGAAGCTTGGAGAGTATTTTAGACCTTGGACTGGTTCTATA-----TTAATGAAGCTGGGGGTGCCTGTCTTCAATTTGAGAATCCAGTAGACAACTAGACTGANCTAGATGCTTGTTTTATCAGACAATTATTTGGCGTGTTCTAGAGATCTTGTGCTGTGAGGAAAAGTGGGAAATGCTGGTAGACATAGCCTTGAGGTTGAATGCCCTCACAAAGTAAGATATTTTTCTATATGCTGGATATATATTCTATA--TATATATATATATATATACTTGT--AT-ATGAAGTATAAAATTGCACACAAATATTCAAATTTATCGCTTATTATCAACAGTTAATACTTCGGTACTTTTCTCATACATTGTCCTTATTAAATTGCCCTTAATTATCAATTGTCCACCATCTTCAGCCAGCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTTCCTACCACCAATAGTTACCATACCCGTACATCTCCAGTTATAAAAAGATCACACTAAGTGGTAATATACTAGTTACCCATTTATTAGT
Reference ( family-4218 ) : CACTGAATTTGCTTGTCACAGATTGTTATTGCCCCTAAGTCTGCCCATTACAAAGTCCAAGTTGTCAGGTATATTACAATTCCAGTTGATTTGTATTTATATGGATTGATTGGTTCATA-CCTGAATCAAAAACATTTTTTTCATATATCATTTCTGCCTCTCATTATACAAGAAAATAGCATTTTTAGACAAACACCTATACCGGACGCATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGCAGACAACTGCTTACAAAAAGTTAATGTTTAAACCTGCTGCATGTTAATGTTGTAAATTTCCTATCATTTTTAAAGACATTGAAAAATGTACATTG-----CATTGCAATGCATCAACTGTTTTGTTTACTGTTACAGGCAAATGCCAATGGGAAGAAGCTTGGAGAGTATTTTAGACCTTGGACTGGTTCTATA-----TTAATGAAGCTGGGGGTGCCTGTCTTCAATTTGAGAATCCAGTAGACAACTAGACTGANCTAGATGCTTGTTTTATCAGACAATTATTTGGCGTGTTCTAGAGATCTTGTGCTGTGAGGAAAAGTGGGAAATGCTGGTAGACATAGCCTTGAGGTTGAATGCCCTCACAAAGTAAGATATTTTTCTATATGCTGGATATATATTCTATA--TATATATATATATATATACTTGT--AT-ATGAAGTATAAAATTGCACACAAATATTCAAATTTATCGCTTATTATCAACAGTTAATACTTCGGTACTTTTCTCATACATTGTCCTTATTAAATTGCCCTTAATTATCAATTGTCCACCATCTTCAGCCAGCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTTCCTACCACCAATAGTTGCCATACCCATACATCTCCAGTTATAAGA-GATCACACTAAGTGGTAATATACTAGTTACCCATTTATTAGT
gi|1 : CACTGAATTTGCTTGTCACAGATTGTTATTGCCCCTAAGTCTGCCCATTACAAAGTCCAAGTTGTCAGGTATATTACAATTCCAGTTGATTTGTATTTATATGGATTGATTGGTTCATA-CCTGAATCAAAAACATTTTTTTCATATATCATTTCTGCCTCTCATTATACAAGAAAATAGCATTTTTAGTCAAACACCTATACCGGACGCAT
gi|1 : TGCAGACAACTGCTTACAAAAAGTTAATGTTTAAACCTGCTGCAAGTTAATGTTGTAAATTTCCTATCATTTTTAAAGACATTGAAAAATGTACATTG-----CATTGCAATGCATCAACTATTTTGTTTACTGTTACAGGCAAATGCCAATGGGAAGAAGCTTGGAGAGTATTTTAGACCTTGGACTGGTTCTATA-----TTAATGAAGCGGGGGGTGCCTGTCTTCAATTTGAGAATCCAGTAGACAACTAGACTGAACTAGATGCTTGTTTTATCAGACAATTATTTGGCGTGTTCTAGAGATCTTGTGCTGTGAGGAAAAGTGGGAAATGCTGGTAGACATAGCCTTGAGGTTGAATGCCCTCACAAAGTAAGATATTTTTCTATATGCTGGATATATATTCTATATA--TATATATATATATATACTTGT--AT-ATGAAGTATAAAATTGCACACAAATATTCAAATTTATTGCTTATTATCAACAGTTAATACTTCGGTACTTTTCTCATACATTGTCCTTATTAAATTGCCCTTAATTATCAATTGTCCACCATCTTCATCCAGCAnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntgcagacaactgcttacaaaaagttaatgtttaaacctgctgcaagttaatgttgtaaatttcctatcatttttaaagacattgaaaaatgtacattgcattgcaatgcatcaactattttgtttactgttacaggcaaatgccaatgggaagaagcttggagagtattttagaccttggactggttctatattaatgaagcggggggtgcctgtcttcaatttgagaatccagtagacaactagactgaactagatgcttgttttatcagacaattatttggcgtgttctagagatcttgtgctgtgaggaaaagtgggaaatgctggtagacatagccttgaggttgaatgccctcacaaagtaagatatttttctatatgctggatatatattctatatatatatatatatatatacttgtatatgaagtataaaattgcacacaaatattcaaatttattgcttattatcaacagttaatacttcggtacttttctcatacattgtccttattaaattgcccttaattatcaattgtccaccatcttcatccagcannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncttcctaccaccaatagttaccatacccgtacatctccagttataaaaagatcacactaagtggtaatatactagttacccatttattagta
gi|1 : cactgaatttgcttgtcacagattgttattgcccctaagtctgcccattacaaagtccaagttgtcaggtatattacaattccagttgatttgtatttatatggattgattggttcatacctgaatcaaaaacatttttttcatatatcatttctgcctctcattatacaagaaaatagcatttttagtcaaacacctataccggacgcatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnCTTCCTACCACCAATAGTTACCATACCCGTACATCTCCAGTTATAAAAAGATCACACTAAGTGGTAATATACTAGTTACCCATTTATTAGTnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncttcctaccaccaatagttaccatacccgtacatctccagttataaaaagatcacactaagtggtaatatactagttacccatttattagta
gi|16 : cactgaatttgcttgtcacagattgttattgcccctaagtctgcccattacaaagtccaagttgtcaggtatattacaattccagttgatttgtatttatatggattgattggttcatacctgaatcaaaaacatttttttcatatatcatttctgcctctcattatacaagaaaatagcatttttagtcaaacacctataccggacgcatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntgcagacaactgcttacaaaaagttaatgtttaaacctgctgcaagttaatgttgtaaatttcctatcatttttaaagacattgaaaaatgtacattgcattgcaatgcatcaactattttgtttactgttacaggcaaatgccaatgggaagaagcttggagagtattttagaccttggactggttctatattaatgaagcggggggtgcctgtcttcaatttgagaatccagtagacaactagactgaactagatgcttgttttatcagacaattatttggcgtgttctagagatcttgtgctgtgaggaaaagtgggaaatgctggtagacatagccttgaggttgaatgccctcacaaagtaagatatttttctatatgctggatatatattctatatatatatatatatatatacttgtatatgaagtataaaattgcacacaaatattcaaatttattgcttattatcaacagttaatacttcggtacttttctcatacattgtccttattaaattgcccttaattatcaattgtccaccatcttcatccagcannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnCACTGAATTTGCTTGTCa
gi|2 : aaagcagggaacataattCACTGAATTTGCTTGTCACAGATTGTTATGGCCCCTAATTCTGCCCATTACAAAGTCCAAGTTGTCAGGTATATTACAATTACAATTGATTTGTATTTATATGGATTGATAGGTTCATATTCT--CTCAAAAACATTATTTCCATAGATCATTTCTGCCACTCAATATACAAGAAAATAGCATTTTTAGACAAACATCTATACTGAATGCAT
gi|2 : gtggggacataaattTGCAGACAACTGCTTACAAAAAGTAAATATCTAAACCTGCTGCATGTTAATTTTGTAAATTTCCTGTCATTTTTTAAGGTTTTGAAAAACG------------------------------GTTTTGTTTATTGTTACAGGCAAATGCCATTGGGAAGAAGCTTGAAGAGTATTTTAAACCGTGGACTGGTTCTATACTGTCTTTATGTTGCTGGGGGTGCCTGnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngtgtgatgttgcaaagacattttcatgcagacaactgcttacaaaaagtaaatatctaaacctgctgcatgttaattttgtaaatttcctgtcattttttaaggttttgaaaaacggttttgtttattgttacaggcaaatgccattgggaagaagcttgaagagtattttaaaccgtggactggttctatactgtctttatgttgctgggggtgcctgacaattatttggcatgttctagagatcttgtactatgaggaaaagtaggaaaagctggtagacatagccttgagattcaatgccctcacaaagtaagatatttttctaaatgctgaatatatattctatataatacttgttaatgatgaagtataaaattgcacacagatattcaaatttatcactttttatcaacagtaaatacttcagtatttctctcatacattgtccttattaaattgcccttaattatcaactgtcttccatcttcagccagc
gi|2 : gtggggacataaattcactgaatttgcttgtcacagattgttatggcccctaattctgcccattacaaagtccaagttgtcaggtatattacaattacaattgatttgtatttatatggattgataggttcatattctctcaaaaacattatttccatagatcatttctgccactcaatatacaagaaaatagcatttttagacaaacatctatactgaatgcatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngtgtgatgttgcaaagacattttcaGACAATTATTTGGCATGTTCTAGAGATCTTGTACTATGAGGAAAAGTAGGAAAAGCTGGTAGACATAGCCTTGAGATTCAATGCCCTCACAAAGTAAGATATTTTTCTAAATGCTGAATATATATTCTATA--TA-------------ATACTTGTTAATGATGAAGTATAAAATTGCACACAGATATTCAAATTTATCACTTTTTATCAACAGTAAATACTTCAGTATTTCTCTCATACATTGTCCTTATTAAATTGCCCTTAATTATCAACTGTCTTCCATCTTCAGCCAGCacaattatttggcatgttctagagatcttgtactatgaggaaaagtaggaaaagctggtagacatagccttgagattcaatgccctcacaaagtaagatatttttctaaatgctgaatatatattctatataatacttgttaatgatgaagtataaaattgcacacagatattcaaatttatcactttttatcaacagtaaatacttcagtatttctctcatacattgtccttattaaattgcccttaattatcaactgtcttccatcttcagccagc
gi|3 : gtggggacataaattcactgaatttgcttgtcacagattgttatggcccctaattctgcccattacaaagtccaagttgtcaggtatattacaattacaattgatttgtatttatatggattgataggttcatattctctcaaaaacattatttccatagatcatttctgccactcaatatacaagaaaatagcatttttagacaaacatctatactgaatgcatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngtgtgatgttgcaaagacattttcatgcagacaactgcttacaaaaagtaaatatctaaacctgctgcatgttaattttgtaaatttcctgtcattttttaaggttttgaaaaacggttttgtttattgttacaggcaaatgccattgggaagaagcttgaagagtattttaaaccgtggactggttctatactgtctttatgttgctgggggtgcctCCTGTCTTCAATTTGAGAATCCAGTAGACAACTAGACTGATCTAGATGCTTGTTTTATCAGACAATTATTTGGCGTGTTCTAGAGATCTTGTGCTGTGAGGAAAAGTGGGAAATGCTGGTAGACATAGCCTTGAGGTTGAATGCCCTCACAAAGTAAGATATTTTTCTATATGCTGGATATATATTCTATA--TATATATATATATATATACTTGT--AT-ATGAAGTATAAAATTGCACACAAATATTCAAATTTATTGCTTATTATCAACAGTTAATACTTCGGTACTTTTCTCATACATTGTCCTTATTAAATTGCCCTTAATTATCAATTGTCCACCATCTTCAGCCAGCA
gi|3 : CTTCCTACCACCAATAGTTACCATACCCGTACATCTCCAGTTATAAAAAGATCACACTAAGTGGTAATATACTAGTTACCCATTTATTAGTnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncttcctaccaccaatagttaccatacccgtacatctccagttataaaaagatcacactaagtggtaatatactagttacccatttattagta
gi|4 : cctgtcttcaatttgagaatccagtagacaactagactgatctagatgcttgttttatcagacaattatttggcgtgttctagagatcttgtgctgtgaggaaaagtgggaaatgctggtagacatagccttgaggttgaatgccctcacaaagtaagatatttttctatatgctggatatatattctatatatatatatatatatatacttgtatatgaagtataaaattgcacacaaatattcaaatttattgcttattatcaacagttaatacttcggtacttttctcatacattgtccttattaaattgcccttaattatcaattgtccaccatcttcagccagcannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnCACTGAATTTGCTTGTCACAGATTGTTACTGCCCCTAAGTCTGCCCATTACAAAGTCCAAGTTGTCAGGTATATTACAATTCCAGTTGATTTGTATTTATATGGATTGATTGGTTCATA-CCTTC-TCAAAAACATTTTTTTCATATATCATTTCTGCCTCTCATTATACAAGAAAATAGTATTTTTAGACAAACACCTATACCGGACGCATa
gi|4 : gggggggcataaattTGCAGACAACTGCTTACAAAAAGTTAATGTTTAAACCTGCTGCATGTTAATGTTGTAAATTTCCTATCATTTTTAAAGACATTGAAAAATGTACATTGCATTG-----CAATGCATCAATTGTTTTGTTTACTGTTACATGCAAATGCCAATGGGAAGAAGCTTAGAGAGTATTTTAGACCTTGGACTGGTTCTATA-----TTAATGAAGCTGGGGGTGCCTGTCTTCAATTTGAGAATCCAGTAGACAACTAGACTGAnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntgcagacaactgcttacaaaaagttaatgtttaaacctgctgcatgttaatgttgtaaatttcctatcatttttaaagacattgaaaaatgtacattgcattgcaatgcatcaattgttttgtttactgttacatgcaaatgccaatgggaagaagcttagagagtattttagaccttggactggttctatattaatgaagctgggggtgcctgtcttcaatttgagaatccagtagacaactagactgaa
gi|5 : gggggggcataaattcactgaatttgcttgtcacagattgttactgcccctaagtctgcccattacaaagtccaagttgtcaggtatattacaattccagttgatttgtatttatatggattgattggttcataccttctcaaaaacatttttttcatatatcatttctgcctctcattatacaagaaaatagtatttttagacaaacacctataccggacgcatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnACTGAATTTGCTTGTCACAGATTGTTATTGCCCCTAAGTCTGCCCATTACAAAGTCCAAGTTGTCAGGTATATTACAATTCCAGTTGATTTGTATTTATATGGATTGATTGGTTCATA-CCTGAATCAAAAACATTTTTTTCATATATCATTTCTGCCTCTCATTATACAAGAAAATAGCATTTTTAGACAAACACCTATACCGGACGCATa
gi|5 : TGCAGACAACTGCTTACAAAAAGTTAATGTTTAAACCTGCTGCATGTTAATGTTGTAAATTTCCTATCATTTTTAAAGACATTGAAAAATGTACATTGCATTG-----CAATGCATCAACTATTTTGTTTACTGTTACAGGCAAATGnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntgcagacaactgcttacaaaaagttaatgtttaaacctgctgcatgttaatgttgtaaatttcctatcatttttaaagacattgaaaaatgtacattgcattgcaatgcatcaactattttgtttactgttacaggcaaatg
gi|6 : actgaatttgcttgtcacagattgttattgcccctaagtctgcccattacaaagtccaagttgtcaggtatattacaattccagttgatttgtatttatatggattgattggttcatacctgaatcaaaaacatttttttcatatatcatttctgcctctcattatacaagaaaatagcatttttagacaaacacctataccggacgcatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnCTTCCTACCACCAATAGTTGCCATACCCATACATCTCCAGTTATAAGA-GATCACACTAAGTGGTAATATACTAGTTACCCATTTATTAGT
13 sequences could not be aligned to this reference sequence:
Unaligned ( gi|7 ): GGGGGTTTTGGTGCAATAACTTCGGAAACCCTAATTCAATTCTTTTGAAAACAAGTGGGGGACATAAATTCACTGAATTTGCTT
Unaligned ( gi|8 ): AAAAATGTCTGAATCACATATTTTGAAAAAAGCGGGGAACATAAATTCACTAAATTTGCTTGTTA
Unaligned ( gi|9 ): CTTGAATCAAATCTTTTAAAAAAGAGAGGGACATCAATTTACTGAATTTGCTTGT
Unaligned ( gi|10 ): GGGGGACATAAATTCACAGAATTTGCTTGCTATAATTTGCTTATAGCTTCTC
Unaligned ( gi|11 ): AAGTGGGGGACATAAACTCACTGAATTTGCTTGTTAT
Unaligned ( gi|12 ): AAAGTGGAAGACATAAATTCCCTGAATTTGCTTGTTT
Unaligned ( gi|13 ): AAGTGGGGGACATAAATTCGCTGAATATGCTTGTTA
Unaligned ( gi|14 ): ATAATTTCAAAACCGTAGTTTGGAAAACCTTTATTC
Unaligned ( gi|15 ): AGCGAGGGACATAAATTCCCTGAATTTGCTTGTTA
Unaligned ( gi|17 ): AAGCGGGGGACACAAATTCACAGAATTTGCTTGT
Unaligned ( gi|18 ): AGCGGGGACATAAATTCACTGAATTTGCTTCTTT
Unaligned ( gi|19 ): AAGCGGGGGACATAATTTCCCTGAATTTGCTTG
Unaligned ( gi|20 ): GGGACATAAATTCACTGAATTTGCTTGTTA
Alignments
lowQualScore : 1 222 9999999999 33333 22222 11 1 4
lowQualScore : 0 111 3 4444444444 0 33333 1 33333 88 3 0 6 6 6 0
lowQualScore : . ... . .......... . ..... . ..... .. . . . . . .
lowQualScore : 0 000 2 5555555555 2 33333 0 77777 33 3 7 0 0 0 0
consensus : CACTGAATTTGCTTGTCACAGATTGTTATTGCCCCTAAGTCTGCCCATTACAAAGTCCAAGTTGTCAGGTATATTACAATTCCAGTTGATTTGTATTTATATGGATTGATTGGTTCATA-CCTGAATCAAAAACATTTTTTTCATATATCATTTCTGCCTCTCATTATACAAGAAAATAGCATTTTTAGACAAACACCTATACCGGACGCATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGCAGACAACTGCTTACAAAAAGTTAATGTTTAAACCTGCTGCATGTTAATGTTGTAAATTTCCTATCATTTTTAAAGACATTGAAAAATGTACATTGCATTG-----CAATGCATCAACTGTTTTGTTTACTGTTACAGGCAAATGCCAATGGGAAGAAGCTTGGAGAGTATTTTAGACCTTGGACTGGTTCTATA-----TTAATGAAGCTGGGGGTGCCTGTCTTCAATTTGAGAATCCAGTAGACAACTAGACTGANCTAGATGCTTGTTTTATCAGACAATTATTTGGCGTGTTCTAGAGATCTTGTGCTGTGAGGAAAAGTGGGAAATGCTGGTAGACATAGCCTTGAGGTTGAATGCCCTCACAAAGTAAGATATTTTTCTATATGCTGGATATATATTCTATA--TATATATATATATATATACTTGT--AT-ATGAAGTATAAAATTGCACACAAATATTCAAATTTATCGCTTATTATCAACAGTTAATACTTCGGTACTTTTCTCATACATTGTCCTTATTAAATTGCCCTTAATTATCAATTGTCCACCATCTTCAGCCAGCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTTCCTACCACCAATAGTTGCCATACCCATACATCTCCAGTTATAAGA-GATCACACTAAGTGGTAATATACTAGTTACCCATTTATTAGT
Reference ( family-4218 ) : CACTGAATTTGCTTGTCACAGATTGTTATTGCCCCTAAGTCTGCCCATTACAAAGTCCAAGTTGTCAGGTATATTACAATTCCAGTTGATTTGTATTTATATGGATTGATTGGTTCATA-CCTGAATCAAAAACATTTTTTTCATATATCATTTCTGCCTCTCATTATACAAGAAAATAGCATTTTTAGACAAACACCTATACCGGACGCATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGCAGACAACTGCTTACAAAAAGTTAATGTTTAAACCTGCTGCATGTTAATGTTGTAAATTTCCTATCATTTTTAAAGACATTGAAAAATGTACATTG-----CATTGCAATGCATCAACTGTTTTGTTTACTGTTACAGGCAAATGCCAATGGGAAGAAGCTTGGAGAGTATTTTAGACCTTGGACTGGTTCTATA-----TTAATGAAGCTGGGGGTGCCTGTCTTCAATTTGAGAATCCAGTAGACAACTAGACTGANCTAGATGCTTGTTTTATCAGACAATTATTTGGCGTGTTCTAGAGATCTTGTGCTGTGAGGAAAAGTGGGAAATGCTGGTAGACATAGCCTTGAGGTTGAATGCCCTCACAAAGTAAGATATTTTTCTATATGCTGGATATATATTCTATA--TATATATATATATATATACTTGT--AT-ATGAAGTATAAAATTGCACACAAATATTCAAATTTATCGCTTATTATCAACAGTTAATACTTCGGTACTTTTCTCATACATTGTCCTTATTAAATTGCCCTTAATTATCAATTGTCCACCATCTTCAGCCAGCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTTCCTACCACCAATAGTTACCATACCCGTACATCTCCAGTTATAAAAAGATCACACTAAGTGGTAATATACTAGTTACCCATTTATTAGT
gi|1 : CACTGAATTTGCTTGTCACAGATTGTTATTGCCCCTAAGTCTGCCCATTACAAAGTCCAAGTTGTCAGGTATATTACAATTCCAGTTGATTTGTATTTATATGGATTGATTGGTTCATA-CCTGAATCAAAAACATTTTTTTCATATATCATTTCTGCCTCTCATTATACAAGAAAATAGCATTTTTAGTCAAACACCTATACCGGACGCAT
gi|1 : TGCAGACAACTGCTTACAAAAAGTTAATGTTTAAACCTGCTGCAAGTTAATGTTGTAAATTTCCTATCATTTTTAAAGACATTGAAAAATGTACATTG-----CATTGCAATGCATCAACTATTTTGTTTACTGTTACAGGCAAATGCCAATGGGAAGAAGCTTGGAGAGTATTTTAGACCTTGGACTGGTTCTATA-----TTAATGAAGCGGGGGGTGCCTGTCTTCAATTTGAGAATCCAGTAGACAACTAGACTGAACTAGATGCTTGTTTTATCAGACAATTATTTGGCGTGTTCTAGAGATCTTGTGCTGTGAGGAAAAGTGGGAAATGCTGGTAGACATAGCCTTGAGGTTGAATGCCCTCACAAAGTAAGATATTTTTCTATATGCTGGATATATATTCTATATA--TATATATATATATATACTTGT--AT-ATGAAGTATAAAATTGCACACAAATATTCAAATTTATTGCTTATTATCAACAGTTAATACTTCGGTACTTTTCTCATACATTGTCCTTATTAAATTGCCCTTAATTATCAATTGTCCACCATCTTCATCCAGCAnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntgcagacaactgcttacaaaaagttaatgtttaaacctgctgcaagttaatgttgtaaatttcctatcatttttaaagacattgaaaaatgtacattgcattgcaatgcatcaactattttgtttactgttacaggcaaatgccaatgggaagaagcttggagagtattttagaccttggactggttctatattaatgaagcggggggtgcctgtcttcaatttgagaatccagtagacaactagactgaactagatgcttgttttatcagacaattatttggcgtgttctagagatcttgtgctgtgaggaaaagtgggaaatgctggtagacatagccttgaggttgaatgccctcacaaagtaagatatttttctatatgctggatatatattctatatatatatatatatatatacttgtatatgaagtataaaattgcacacaaatattcaaatttattgcttattatcaacagttaatacttcggtacttttctcatacattgtccttattaaattgcccttaattatcaattgtccaccatcttcatccagcannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncttcctaccaccaatagttaccatacccgtacatctccagttataaaaagatcacactaagtggtaatatactagttacccatttattagta
gi|16 : cactgaatttgcttgtcacagattgttattgcccctaagtctgcccattacaaagtccaagttgtcaggtatattacaattccagttgatttgtatttatatggattgattggttcatacctgaatcaaaaacatttttttcatatatcatttctgcctctcattatacaagaaaatagcatttttagtcaaacacctataccggacgcatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnCACTGAATTTGCTTGTCnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncttcctaccaccaatagttaccatacccgtacatctccagttataaaaagatcacactaagtggtaatatactagttacccatttattagta
gi|2 : aaagcagggaacataattCACTGAATTTGCTTGTCACAGATTGTTATGGCCCCTAATTCTGCCCATTACAAAGTCCAAGTTGTCAGGTATATTACAATTACAATTGATTTGTATTTATATGGATTGATAGGTTCATATTCT--CTCAAAAACATTATTTCCATAGATCATTTCTGCCACTCAATATACAAGAAAATAGCATTTTTAGACAAACATCTATACTGAATGCAT
gi|2 : gtggggacataaattTGCAGACAACTGCTTACAAAAAGTAAATATCTAAACCTGCTGCATGTTAATTTTGTAAATTTCCTGTCATTTTTTAAGGTTTTGAAAAACG------------------------------GTTTTGTTTATTGTTACAGGCAAATGCCATTGGGAAGAAGCTTGAAGAGTATTTTAAACCGTGGACTGGTTCTATACTGTCTTTATGTTGCTGGGGGTGCCTGnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngtgtgatgttgcaaagacattttcatgcagacaactgcttacaaaaagtaaatatctaaacctgctgcatgttaattttgtaaatttcctgtcattttttaaggttttgaaaaacggttttgtttattgttacaggcaaatgccattgggaagaagcttgaagagtattttaaaccgtggactggttctatactgtctttatgttgctgggggtgcctgacaattatttggcatgttctagagatcttgtactatgaggaaaagtaggaaaagctggtagacatagccttgagattcaatgccctcacaaagtaagatatttttctaaatgctgaatatatattctatataatacttgttaatgatgaagtataaaattgcacacagatattcaaatttatcactttttatcaacagtaaatacttcagtatttctctcatacattgtccttattaaattgcccttaattatcaactgtcttccatcttcagccagc
gi|2 : gtggggacataaattcactgaatttgcttgtcacagattgttatggcccctaattctgcccattacaaagtccaagttgtcaggtatattacaattacaattgatttgtatttatatggattgataggttcatattctctcaaaaacattatttccatagatcatttctgccactcaatatacaagaaaatagcatttttagacaaacatctatactgaatgcatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngtgtgatgttgcaaagacattttcaGACAATTATTTGGCATGTTCTAGAGATCTTGTACTATGAGGAAAAGTAGGAAAAGCTGGTAGACATAGCCTTGAGATTCAATGCCCTCACAAAGTAAGATATTTTTCTAAATGCTGAATATATATTCTATA--TA-------------ATACTTGTTAATGATGAAGTATAAAATTGCACACAGATATTCAAATTTATCACTTTTTATCAACAGTAAATACTTCAGTATTTCTCTCATACATTGTCCTTATTAAATTGCCCTTAATTATCAACTGTCTTCCATCTTCAGCCAGCacaattatttggcatgttctagagatcttgtactatgaggaaaagtaggaaaagctggtagacatagccttgagattcaatgccctcacaaagtaagatatttttctaaatgctgaatatatattctatataatacttgttaatgatgaagtataaaattgcacacagatattcaaatttatcactttttatcaacagtaaatacttcagtatttctctcatacattgtccttattaaattgcccttaattatcaactgtcttccatcttcagccagc
gi|3 : gtggggacataaattcactgaatttgcttgtcacagattgttatggcccctaattctgcccattacaaagtccaagttgtcaggtatattacaattacaattgatttgtatttatatggattgataggttcatattctctcaaaaacattatttccatagatcatttctgccactcaatatacaagaaaatagcatttttagacaaacatctatactgaatgcatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngtgtgatgttgcaaagacattttcatgcagacaactgcttacaaaaagtaaatatctaaacctgctgcatgttaattttgtaaatttcctgtcattttttaaggttttgaaaaacggttttgtttattgttacaggcaaatgccattgggaagaagcttgaagagtattttaaaccgtggactggttctatactgtctttatgttgctgggggtgcctCCTGTCTTCAATTTGAGAATCCAGTAGACAACTAGACTGATCTAGATGCTTGTTTTATCAGACAATTATTTGGCGTGTTCTAGAGATCTTGTGCTGTGAGGAAAAGTGGGAAATGCTGGTAGACATAGCCTTGAGGTTGAATGCCCTCACAAAGTAAGATATTTTTCTATATGCTGGATATATATTCTATA--TATATATATATATATATACTTGT--AT-ATGAAGTATAAAATTGCACACAAATATTCAAATTTATTGCTTATTATCAACAGTTAATACTTCGGTACTTTTCTCATACATTGTCCTTATTAAATTGCCCTTAATTATCAATTGTCCACCATCTTCAGCCAGCA
gi|4 : CACTGAATTTGCTTGTCACAGATTGTTACTGCCCCTAAGTCTGCCCATTACAAAGTCCAAGTTGTCAGGTATATTACAATTCCAGTTGATTTGTATTTATATGGATTGATTGGTTCATA-CCTTC-TCAAAAACATTTTTTTCATATATCATTTCTGCCTCTCATTATACAAGAAAATAGTATTTTTAGACAAACACCTATACCGGACGCATnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncttcctaccaccaatagttaccatacccgtacatctccagttataaaaagatcacactaagtggtaatatactagttacccatttattagta
gi|4 : gggggggcataaattTGCAGACAACTGCTTACAAAAAGTTAATGTTTAAACCTGCTGCATGTTAATGTTGTAAATTTCCTATCATTTTTAAAGACATTGAAAAATGTACATTGCATTG-----CAATGCATCAATTGTTTTGTTTACTGTTACATGCAAATGCCAATGGGAAGAAGCTTAGAGAGTATTTTAGACCTTGGACTGGTTCTATA-----TTAATGAAGCTGGGGGTGCCTGTCTTCAATTTGAGAATCCAGTAGACAACTAGACTGAnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntgcagacaactgcttacaaaaagttaatgtttaaacctgctgcatgttaatgttgtaaatttcctatcatttttaaagacattgaaaaatgtacattgcattgcaatgcatcaattgttttgtttactgttacatgcaaatgccaatgggaagaagcttagagagtattttagaccttggactggttctatattaatgaagctgggggtgcctgtcttcaatttgagaatccagtagacaactagactgaa
gi|5 : gggggggcataaattcactgaatttgcttgtcacagattgttactgcccctaagtctgcccattacaaagtccaagttgtcaggtatattacaattccagttgatttgtatttatatggattgattggttcataccttctcaaaaacatttttttcatatatcatttctgcctctcattatacaagaaaatagtatttttagacaaacacctataccggacgcatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnACTGAATTTGCTTGTCACAGATTGTTATTGCCCCTAAGTCTGCCCATTACAAAGTCCAAGTTGTCAGGTATATTACAATTCCAGTTGATTTGTATTTATATGGATTGATTGGTTCATA-CCTGAATCAAAAACATTTTTTTCATATATCATTTCTGCCTCTCATTATACAAGAAAATAGCATTTTTAGACAAACACCTATACCGGACGCATa
gi|5 : TGCAGACAACTGCTTACAAAAAGTTAATGTTTAAACCTGCTGCATGTTAATGTTGTAAATTTCCTATCATTTTTAAAGACATTGAAAAATGTACATTGCATTG-----CAATGCATCAACTATTTTGTTTACTGTTACAGGCAAATGnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntgcagacaactgcttacaaaaagttaatgtttaaacctgctgcatgttaatgttgtaaatttcctatcatttttaaagacattgaaaaatgtacattgcattgcaatgcatcaactattttgtttactgttacaggcaaatg
gi|6 : actgaatttgcttgtcacagattgttattgcccctaagtctgcccattacaaagtccaagttgtcaggtatattacaattccagttgatttgtatttatatggattgattggttcatacctgaatcaaaaacatttttttcatatatcatttctgcctctcattatacaagaaaatagcatttttagacaaacacctataccggacgcatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnCTTCCTACCACCAATAGTTGCCATACCCATACATCTCCAGTTATAAGA-GATCACACTAAGTGGTAATATACTAGTTACCCATTTATTAGT
13 sequences could not be aligned to this reference sequence:
Unaligned ( gi|7 ): GGGGGTTTTGGTGCAATAACTTCGGAAACCCTAATTCAATTCTTTTGAAAACAAGTGGGGGACATAAATTCACTGAATTTGCTT
Unaligned ( gi|8 ): AAAAATGTCTGAATCACATATTTTGAAAAAAGCGGGGAACATAAATTCACTAAATTTGCTTGTTA
Unaligned ( gi|9 ): CTTGAATCAAATCTTTTAAAAAAGAGAGGGACATCAATTTACTGAATTTGCTTGT
Unaligned ( gi|10 ): GGGGGACATAAATTCACAGAATTTGCTTGCTATAATTTGCTTATAGCTTCTC
Unaligned ( gi|11 ): AAGTGGGGGACATAAACTCACTGAATTTGCTTGTTAT
Unaligned ( gi|12 ): AAAGTGGAAGACATAAATTCCCTGAATTTGCTTGTTT
Unaligned ( gi|13 ): AAGTGGGGGACATAAATTCGCTGAATATGCTTGTTA
Unaligned ( gi|14 ): ATAATTTCAAAACCGTAGTTTGGAAAACCTTTATTC
Unaligned ( gi|15 ): AGCGAGGGACATAAATTCCCTGAATTTGCTTGTTA
Unaligned ( gi|17 ): AAGCGGGGGACACAAATTCACAGAATTTGCTTGT
Unaligned ( gi|18 ): AGCGGGGACATAAATTCACTGAATTTGCTTCTTT
Unaligned ( gi|19 ): AAGCGGGGGACATAATTTCCCTGAATTTGCTTG
Unaligned ( gi|20 ): GGGACATAAATTCACTGAATTTGCTTGTTA
Alignments
lowQualScore : 1 222 9999999999 33333 22222 11 1 2
lowQualScore : 0 111 3 4444444444 0 33333 1 33333 88 3 0 0 1 0 6
lowQualScore : . ... . .......... . ..... . ..... .. . . . . . .
lowQualScore : 0 000 2 5555555555 2 33333 0 77777 33 3 7 7 0 7 7
consensus : CACTGAATTTGCTTGTCACAGATTGTTATTGCCCCTAAGTCTGCCCATTACAAAGTCCAAGTTGTCAGGTATATTACAATTCCAGTTGATTTGTATTTATATGGATTGATTGGTTCATA-CCTGAATCAAAAACATTTTTTTCATATATCATTTCTGCCTCTCATTATACAAGAAAATAGCATTTTTAGACAAACACCTATACCGGACGCATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGCAGACAACTGCTTACAAAAAGTTAATGTTTAAACCTGCTGCATGTTAATGTTGTAAATTTCCTATCATTTTTAAAGACATTGAAAAATGTACATTGCATTG-----CAATGCATCAACTGTTTTGTTTACTGTTACAGGCAAATGCCAATGGGAAGAAGCTTGGAGAGTATTTTAGACCTTGGACTGGTTCTATA-----TTAATGAAGCTGGGGGTGCCTGTCTTCAATTTGAGAATCCAGTAGACAACTAGACTGANCTAGATGCTTGTTTTATCAGACAATTATTTGGCGTGTTCTAGAGATCTTGTGCTGTGAGGAAAAGTGGGAAATGCTGGTAGACATAGCCTTGAGGTTGAATGCCCTCACAAAGTAAGATATTTTTCTATATGCTGGATATATATTCTATA--TATATATATATATATATACTTGT--AT-ATGAAGTATAAAATTGCACACAAATATTCAAATTTATCGCTTATTATCAACAGTTAATACTTCGGTACTTTTCTCATACATTGTCCTTATTAAATTGCCCTTAATTATCAATTGTCCACCATCTTCAGCCAGCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTTCCTACCACCAATAGTTACCATACCCGTACATCTCCAGTTATAAAAAGATCACACTAAGTGGTAATATACTAGTTACCCATTTATTAGT
Reference ( family-4218 ) : CACTGAATTTGCTTGTCACAGATTGTTATTGCCCCTAAGTCTGCCCATTACAAAGTCCAAGTTGTCAGGTATATTACAATTCCAGTTGATTTGTATTTATATGGATTGATTGGTTCATA-CCTGAATCAAAAACATTTTTTTCATATATCATTTCTGCCTCTCATTATACAAGAAAATAGCATTTTTAGACAAACACCTATACCGGACGCATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGCAGACAACTGCTTACAAAAAGTTAATGTTTAAACCTGCTGCATGTTAATGTTGTAAATTTCCTATCATTTTTAAAGACATTGAAAAATGTACATTG-----CATTGCAATGCATCAACTGTTTTGTTTACTGTTACAGGCAAATGCCAATGGGAAGAAGCTTGGAGAGTATTTTAGACCTTGGACTGGTTCTATA-----TTAATGAAGCTGGGGGTGCCTGTCTTCAATTTGAGAATCCAGTAGACAACTAGACTGANCTAGATGCTTGTTTTATCAGACAATTATTTGGCGTGTTCTAGAGATCTTGTGCTGTGAGGAAAAGTGGGAAATGCTGGTAGACATAGCCTTGAGGTTGAATGCCCTCACAAAGTAAGATATTTTTCTATATGCTGGATATATATTCTATA--TATATATATATATATATACTTGT--AT-ATGAAGTATAAAATTGCACACAAATATTCAAATTTATCGCTTATTATCAACAGTTAATACTTCGGTACTTTTCTCATACATTGTCCTTATTAAATTGCCCTTAATTATCAATTGTCCACCATCTTCAGCCAGCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTTCCTACCACCAATAGTTGCCATACCCATACATCTCCAGTTATAAGA-GATCACACTAAGTGGTAATATACTAGTTACCCATTTATTAGT
gi|1 : CACTGAATTTGCTTGTCACAGATTGTTATTGCCCCTAAGTCTGCCCATTACAAAGTCCAAGTTGTCAGGTATATTACAATTCCAGTTGATTTGTATTTATATGGATTGATTGGTTCATA-CCTGAATCAAAAACATTTTTTTCATATATCATTTCTGCCTCTCATTATACAAGAAAATAGCATTTTTAGTCAAACACCTATACCGGACGCAT
gi|1 : TGCAGACAACTGCTTACAAAAAGTTAATGTTTAAACCTGCTGCAAGTTAATGTTGTAAATTTCCTATCATTTTTAAAGACATTGAAAAATGTACATTG-----CATTGCAATGCATCAACTATTTTGTTTACTGTTACAGGCAAATGCCAATGGGAAGAAGCTTGGAGAGTATTTTAGACCTTGGACTGGTTCTATA-----TTAATGAAGCGGGGGGTGCCTGTCTTCAATTTGAGAATCCAGTAGACAACTAGACTGAACTAGATGCTTGTTTTATCAGACAATTATTTGGCGTGTTCTAGAGATCTTGTGCTGTGAGGAAAAGTGGGAAATGCTGGTAGACATAGCCTTGAGGTTGAATGCCCTCACAAAGTAAGATATTTTTCTATATGCTGGATATATATTCTATATA--TATATATATATATATACTTGT--AT-ATGAAGTATAAAATTGCACACAAATATTCAAATTTATTGCTTATTATCAACAGTTAATACTTCGGTACTTTTCTCATACATTGTCCTTATTAAATTGCCCTTAATTATCAATTGTCCACCATCTTCATCCAGCAnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntgcagacaactgcttacaaaaagttaatgtttaaacctgctgcaagttaatgttgtaaatttcctatcatttttaaagacattgaaaaatgtacattgcattgcaatgcatcaactattttgtttactgttacaggcaaatgccaatgggaagaagcttggagagtattttagaccttggactggttctatattaatgaagcggggggtgcctgtcttcaatttgagaatccagtagacaactagactgaactagatgcttgttttatcagacaattatttggcgtgttctagagatcttgtgctgtgaggaaaagtgggaaatgctggtagacatagccttgaggttgaatgccctcacaaagtaagatatttttctatatgctggatatatattctatatatatatatatatatatacttgtatatgaagtataaaattgcacacaaatattcaaatttattgcttattatcaacagttaatacttcggtacttttctcatacattgtccttattaaattgcccttaattatcaattgtccaccatcttcatccagcannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncttcctaccaccaatagttaccatacccgtacatctccagttataaaaagatcacactaagtggtaatatactagttacccatttattagta
gi|1 : cactgaatttgcttgtcacagattgttattgcccctaagtctgcccattacaaagtccaagttgtcaggtatattacaattccagttgatttgtatttatatggattgattggttcatacctgaatcaaaaacatttttttcatatatcatttctgcctctcattatacaagaaaatagcatttttagtcaaacacctataccggacgcatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnCTTCCTACCACCAATAGTTACCATACCCGTACATCTCCAGTTATAAAAAGATCACACTAAGTGGTAATATACTAGTTACCCATTTATTAGTnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncttcctaccaccaatagttaccatacccgtacatctccagttataaaaagatcacactaagtggtaatatactagttacccatttattagta
gi|16 : cactgaatttgcttgtcacagattgttattgcccctaagtctgcccattacaaagtccaagttgtcaggtatattacaattccagttgatttgtatttatatggattgattggttcatacctgaatcaaaaacatttttttcatatatcatttctgcctctcattatacaagaaaatagcatttttagtcaaacacctataccggacgcatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntgcagacaactgcttacaaaaagttaatgtttaaacctgctgcaagttaatgttgtaaatttcctatcatttttaaagacattgaaaaatgtacattgcattgcaatgcatcaactattttgtttactgttacaggcaaatgccaatgggaagaagcttggagagtattttagaccttggactggttctatattaatgaagcggggggtgcctgtcttcaatttgagaatccagtagacaactagactgaactagatgcttgttttatcagacaattatttggcgtgttctagagatcttgtgctgtgaggaaaagtgggaaatgctggtagacatagccttgaggttgaatgccctcacaaagtaagatatttttctatatgctggatatatattctatatatatatatatatatatacttgtatatgaagtataaaattgcacacaaatattcaaatttattgcttattatcaacagttaatacttcggtacttttctcatacattgtccttattaaattgcccttaattatcaattgtccaccatcttcatccagcannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnCACTGAATTTGCTTGTCa
gi|2 : aaagcagggaacataattCACTGAATTTGCTTGTCACAGATTGTTATGGCCCCTAATTCTGCCCATTACAAAGTCCAAGTTGTCAGGTATATTACAATTACAATTGATTTGTATTTATATGGATTGATAGGTTCATATTCT--CTCAAAAACATTATTTCCATAGATCATTTCTGCCACTCAATATACAAGAAAATAGCATTTTTAGACAAACATCTATACTGAATGCAT
gi|2 : gtggggacataaattTGCAGACAACTGCTTACAAAAAGTAAATATCTAAACCTGCTGCATGTTAATTTTGTAAATTTCCTGTCATTTTTTAAGGTTTTGAAAAACG------------------------------GTTTTGTTTATTGTTACAGGCAAATGCCATTGGGAAGAAGCTTGAAGAGTATTTTAAACCGTGGACTGGTTCTATACTGTCTTTATGTTGCTGGGGGTGCCTGnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngtgtgatgttgcaaagacattttcatgcagacaactgcttacaaaaagtaaatatctaaacctgctgcatgttaattttgtaaatttcctgtcattttttaaggttttgaaaaacggttttgtttattgttacaggcaaatgccattgggaagaagcttgaagagtattttaaaccgtggactggttctatactgtctttatgttgctgggggtgcctgacaattatttggcatgttctagagatcttgtactatgaggaaaagtaggaaaagctggtagacatagccttgagattcaatgccctcacaaagtaagatatttttctaaatgctgaatatatattctatataatacttgttaatgatgaagtataaaattgcacacagatattcaaatttatcactttttatcaacagtaaatacttcagtatttctctcatacattgtccttattaaattgcccttaattatcaactgtcttccatcttcagccagc
gi|2 : gtggggacataaattcactgaatttgcttgtcacagattgttatggcccctaattctgcccattacaaagtccaagttgtcaggtatattacaattacaattgatttgtatttatatggattgataggttcatattctctcaaaaacattatttccatagatcatttctgccactcaatatacaagaaaatagcatttttagacaaacatctatactgaatgcatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngtgtgatgttgcaaagacattttcaGACAATTATTTGGCATGTTCTAGAGATCTTGTACTATGAGGAAAAGTAGGAAAAGCTGGTAGACATAGCCTTGAGATTCAATGCCCTCACAAAGTAAGATATTTTTCTAAATGCTGAATATATATTCTATA--TA-------------ATACTTGTTAATGATGAAGTATAAAATTGCACACAGATATTCAAATTTATCACTTTTTATCAACAGTAAATACTTCAGTATTTCTCTCATACATTGTCCTTATTAAATTGCCCTTAATTATCAACTGTCTTCCATCTTCAGCCAGCacaattatttggcatgttctagagatcttgtactatgaggaaaagtaggaaaagctggtagacatagccttgagattcaatgccctcacaaagtaagatatttttctaaatgctgaatatatattctatataatacttgttaatgatgaagtataaaattgcacacagatattcaaatttatcactttttatcaacagtaaatacttcagtatttctctcatacattgtccttattaaattgcccttaattatcaactgtcttccatcttcagccagc
gi|3 : gtggggacataaattcactgaatttgcttgtcacagattgttatggcccctaattctgcccattacaaagtccaagttgtcaggtatattacaattacaattgatttgtatttatatggattgataggttcatattctctcaaaaacattatttccatagatcatttctgccactcaatatacaagaaaatagcatttttagacaaacatctatactgaatgcatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngtgtgatgttgcaaagacattttcatgcagacaactgcttacaaaaagtaaatatctaaacctgctgcatgttaattttgtaaatttcctgtcattttttaaggttttgaaaaacggttttgtttattgttacaggcaaatgccattgggaagaagcttgaagagtattttaaaccgtggactggttctatactgtctttatgttgctgggggtgcctCCTGTCTTCAATTTGAGAATCCAGTAGACAACTAGACTGATCTAGATGCTTGTTTTATCAGACAATTATTTGGCGTGTTCTAGAGATCTTGTGCTGTGAGGAAAAGTGGGAAATGCTGGTAGACATAGCCTTGAGGTTGAATGCCCTCACAAAGTAAGATATTTTTCTATATGCTGGATATATATTCTATA--TATATATATATATATATACTTGT--AT-ATGAAGTATAAAATTGCACACAAATATTCAAATTTATTGCTTATTATCAACAGTTAATACTTCGGTACTTTTCTCATACATTGTCCTTATTAAATTGCCCTTAATTATCAATTGTCCACCATCTTCAGCCAGCA
gi|3 : CTTCCTACCACCAATAGTTACCATACCCGTACATCTCCAGTTATAAAAAGATCACACTAAGTGGTAATATACTAGTTACCCATTTATTAGTnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncttcctaccaccaatagttaccatacccgtacatctccagttataaaaagatcacactaagtggtaatatactagttacccatttattagta
gi|4 : cctgtcttcaatttgagaatccagtagacaactagactgatctagatgcttgttttatcagacaattatttggcgtgttctagagatcttgtgctgtgaggaaaagtgggaaatgctggtagacatagccttgaggttgaatgccctcacaaagtaagatatttttctatatgctggatatatattctatatatatatatatatatatacttgtatatgaagtataaaattgcacacaaatattcaaatttattgcttattatcaacagttaatacttcggtacttttctcatacattgtccttattaaattgcccttaattatcaattgtccaccatcttcagccagcannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnCACTGAATTTGCTTGTCACAGATTGTTACTGCCCCTAAGTCTGCCCATTACAAAGTCCAAGTTGTCAGGTATATTACAATTCCAGTTGATTTGTATTTATATGGATTGATTGGTTCATA-CCTTC-TCAAAAACATTTTTTTCATATATCATTTCTGCCTCTCATTATACAAGAAAATAGTATTTTTAGACAAACACCTATACCGGACGCATa
gi|4 : gggggggcataaattTGCAGACAACTGCTTACAAAAAGTTAATGTTTAAACCTGCTGCATGTTAATGTTGTAAATTTCCTATCATTTTTAAAGACATTGAAAAATGTACATTGCATTG-----CAATGCATCAATTGTTTTGTTTACTGTTACATGCAAATGCCAATGGGAAGAAGCTTAGAGAGTATTTTAGACCTTGGACTGGTTCTATA-----TTAATGAAGCTGGGGGTGCCTGTCTTCAATTTGAGAATCCAGTAGACAACTAGACTGAnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntgcagacaactgcttacaaaaagttaatgtttaaacctgctgcatgttaatgttgtaaatttcctatcatttttaaagacattgaaaaatgtacattgcattgcaatgcatcaattgttttgtttactgttacatgcaaatgccaatgggaagaagcttagagagtattttagaccttggactggttctatattaatgaagctgggggtgcctgtcttcaatttgagaatccagtagacaactagactgaa
gi|5 : gggggggcataaattcactgaatttgcttgtcacagattgttactgcccctaagtctgcccattacaaagtccaagttgtcaggtatattacaattccagttgatttgtatttatatggattgattggttcataccttctcaaaaacatttttttcatatatcatttctgcctctcattatacaagaaaatagtatttttagacaaacacctataccggacgcatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnACTGAATTTGCTTGTCACAGATTGTTATTGCCCCTAAGTCTGCCCATTACAAAGTCCAAGTTGTCAGGTATATTACAATTCCAGTTGATTTGTATTTATATGGATTGATTGGTTCATA-CCTGAATCAAAAACATTTTTTTCATATATCATTTCTGCCTCTCATTATACAAGAAAATAGCATTTTTAGACAAACACCTATACCGGACGCATa
gi|5 : TGCAGACAACTGCTTACAAAAAGTTAATGTTTAAACCTGCTGCATGTTAATGTTGTAAATTTCCTATCATTTTTAAAGACATTGAAAAATGTACATTGCATTG-----CAATGCATCAACTATTTTGTTTACTGTTACAGGCAAATGnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntgcagacaactgcttacaaaaagttaatgtttaaacctgctgcatgttaatgttgtaaatttcctatcatttttaaagacattgaaaaatgtacattgcattgcaatgcatcaactattttgtttactgttacaggcaaatg
gi|6 : actgaatttgcttgtcacagattgttattgcccctaagtctgcccattacaaagtccaagttgtcaggtatattacaattccagttgatttgtatttatatggattgattggttcatacctgaatcaaaaacatttttttcatatatcatttctgcctctcattatacaagaaaatagcatttttagacaaacacctataccggacgcatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnCTTCCTACCACCAATAGTTGCCATACCCATACATCTCCAGTTATAAGA-GATCACACTAAGTGGTAATATACTAGTTACCCATTTATTAGT
13 sequences could not be aligned to this reference sequence:
Unaligned ( gi|7 ): GGGGGTTTTGGTGCAATAACTTCGGAAACCCTAATTCAATTCTTTTGAAAACAAGTGGGGGACATAAATTCACTGAATTTGCTT
Unaligned ( gi|8 ): AAAAATGTCTGAATCACATATTTTGAAAAAAGCGGGGAACATAAATTCACTAAATTTGCTTGTTA
Unaligned ( gi|9 ): CTTGAATCAAATCTTTTAAAAAAGAGAGGGACATCAATTTACTGAATTTGCTTGT
Unaligned ( gi|10 ): GGGGGACATAAATTCACAGAATTTGCTTGCTATAATTTGCTTATAGCTTCTC
Unaligned ( gi|11 ): AAGTGGGGGACATAAACTCACTGAATTTGCTTGTTAT
Unaligned ( gi|12 ): AAAGTGGAAGACATAAATTCCCTGAATTTGCTTGTTT
Unaligned ( gi|13 ): AAGTGGGGGACATAAATTCGCTGAATATGCTTGTTA
Unaligned ( gi|14 ): ATAATTTCAAAACCGTAGTTTGGAAAACCTTTATTC
Unaligned ( gi|15 ): AGCGAGGGACATAAATTCCCTGAATTTGCTTGTTA
Unaligned ( gi|17 ): AAGCGGGGGACACAAATTCACAGAATTTGCTTGT
Unaligned ( gi|18 ): AGCGGGGACATAAATTCACTGAATTTGCTTCTTT
Unaligned ( gi|19 ): AAGCGGGGGACATAATTTCCCTGAATTTGCTTG
Unaligned ( gi|20 ): GGGACATAAATTCACTGAATTTGCTTGTTA
Alignments
lowQualScore : 1 222 9999999999 33333 22222 11 1 4
lowQualScore : 0 111 3 4444444444 0 33333 1 33333 88 3 0 6 6 6 0
lowQualScore : . ... . .......... . ..... . ..... .. . . . . . .
lowQualScore : 0 000 2 5555555555 2 33333 0 77777 33 3 7 0 0 0 0
consensus : CACTGAATTTGCTTGTCACAGATTGTTATTGCCCCTAAGTCTGCCCATTACAAAGTCCAAGTTGTCAGGTATATTACAATTCCAGTTGATTTGTATTTATATGGATTGATTGGTTCATA-CCTGAATCAAAAACATTTTTTTCATATATCATTTCTGCCTCTCATTATACAAGAAAATAGCATTTTTAGACAAACACCTATACCGGACGCATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGCAGACAACTGCTTACAAAAAGTTAATGTTTAAACCTGCTGCATGTTAATGTTGTAAATTTCCTATCATTTTTAAAGACATTGAAAAATGTACATTGCATTG-----CAATGCATCAACTGTTTTGTTTACTGTTACAGGCAAATGCCAATGGGAAGAAGCTTGGAGAGTATTTTAGACCTTGGACTGGTTCTATA-----TTAATGAAGCTGGGGGTGCCTGTCTTCAATTTGAGAATCCAGTAGACAACTAGACTGANCTAGATGCTTGTTTTATCAGACAATTATTTGGCGTGTTCTAGAGATCTTGTGCTGTGAGGAAAAGTGGGAAATGCTGGTAGACATAGCCTTGAGGTTGAATGCCCTCACAAAGTAAGATATTTTTCTATATGCTGGATATATATTCTATA--TATATATATATATATATACTTGT--AT-ATGAAGTATAAAATTGCACACAAATATTCAAATTTATCGCTTATTATCAACAGTTAATACTTCGGTACTTTTCTCATACATTGTCCTTATTAAATTGCCCTTAATTATCAATTGTCCACCATCTTCAGCCAGCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTTCCTACCACCAATAGTTGCCATACCCATACATCTCCAGTTATAAGA-GATCACACTAAGTGGTAATATACTAGTTACCCATTTATTAGT
Reference ( family-4218 ) : CACTGAATTTGCTTGTCACAGATTGTTATTGCCCCTAAGTCTGCCCATTACAAAGTCCAAGTTGTCAGGTATATTACAATTCCAGTTGATTTGTATTTATATGGATTGATTGGTTCATA-CCTGAATCAAAAACATTTTTTTCATATATCATTTCTGCCTCTCATTATACAAGAAAATAGCATTTTTAGACAAACACCTATACCGGACGCATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGCAGACAACTGCTTACAAAAAGTTAATGTTTAAACCTGCTGCATGTTAATGTTGTAAATTTCCTATCATTTTTAAAGACATTGAAAAATGTACATTG-----CATTGCAATGCATCAACTGTTTTGTTTACTGTTACAGGCAAATGCCAATGGGAAGAAGCTTGGAGAGTATTTTAGACCTTGGACTGGTTCTATA-----TTAATGAAGCTGGGGGTGCCTGTCTTCAATTTGAGAATCCAGTAGACAACTAGACTGANCTAGATGCTTGTTTTATCAGACAATTATTTGGCGTGTTCTAGAGATCTTGTGCTGTGAGGAAAAGTGGGAAATGCTGGTAGACATAGCCTTGAGGTTGAATGCCCTCACAAAGTAAGATATTTTTCTATATGCTGGATATATATTCTATA--TATATATATATATATATACTTGT--AT-ATGAAGTATAAAATTGCACACAAATATTCAAATTTATCGCTTATTATCAACAGTTAATACTTCGGTACTTTTCTCATACATTGTCCTTATTAAATTGCCCTTAATTATCAATTGTCCACCATCTTCAGCCAGCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTTCCTACCACCAATAGTTACCATACCCGTACATCTCCAGTTATAAAAAGATCACACTAAGTGGTAATATACTAGTTACCCATTTATTAGT
gi|1 : CACTGAATTTGCTTGTCACAGATTGTTATTGCCCCTAAGTCTGCCCATTACAAAGTCCAAGTTGTCAGGTATATTACAATTCCAGTTGATTTGTATTTATATGGATTGATTGGTTCATA-CCTGAATCAAAAACATTTTTTTCATATATCATTTCTGCCTCTCATTATACAAGAAAATAGCATTTTTAGTCAAACACCTATACCGGACGCAT
gi|1 : TGCAGACAACTGCTTACAAAAAGTTAATGTTTAAACCTGCTGCAAGTTAATGTTGTAAATTTCCTATCATTTTTAAAGACATTGAAAAATGTACATTG-----CATTGCAATGCATCAACTATTTTGTTTACTGTTACAGGCAAATGCCAATGGGAAGAAGCTTGGAGAGTATTTTAGACCTTGGACTGGTTCTATA-----TTAATGAAGCGGGGGGTGCCTGTCTTCAATTTGAGAATCCAGTAGACAACTAGACTGAACTAGATGCTTGTTTTATCAGACAATTATTTGGCGTGTTCTAGAGATCTTGTGCTGTGAGGAAAAGTGGGAAATGCTGGTAGACATAGCCTTGAGGTTGAATGCCCTCACAAAGTAAGATATTTTTCTATATGCTGGATATATATTCTATATA--TATATATATATATATACTTGT--AT-ATGAAGTATAAAATTGCACACAAATATTCAAATTTATTGCTTATTATCAACAGTTAATACTTCGGTACTTTTCTCATACATTGTCCTTATTAAATTGCCCTTAATTATCAATTGTCCACCATCTTCATCCAGCAnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntgcagacaactgcttacaaaaagttaatgtttaaacctgctgcaagttaatgttgtaaatttcctatcatttttaaagacattgaaaaatgtacattgcattgcaatgcatcaactattttgtttactgttacaggcaaatgccaatgggaagaagcttggagagtattttagaccttggactggttctatattaatgaagcggggggtgcctgtcttcaatttgagaatccagtagacaactagactgaactagatgcttgttttatcagacaattatttggcgtgttctagagatcttgtgctgtgaggaaaagtgggaaatgctggtagacatagccttgaggttgaatgccctcacaaagtaagatatttttctatatgctggatatatattctatatatatatatatatatatacttgtatatgaagtataaaattgcacacaaatattcaaatttattgcttattatcaacagttaatacttcggtacttttctcatacattgtccttattaaattgcccttaattatcaattgtccaccatcttcatccagcannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncttcctaccaccaatagttaccatacccgtacatctccagttataaaaagatcacactaagtggtaatatactagttacccatttattagta
gi|16 : cactgaatttgcttgtcacagattgttattgcccctaagtctgcccattacaaagtccaagttgtcaggtatattacaattccagttgatttgtatttatatggattgattggttcatacctgaatcaaaaacatttttttcatatatcatttctgcctctcattatacaagaaaatagcatttttagtcaaacacctataccggacgcatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnCACTGAATTTGCTTGTCnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncttcctaccaccaatagttaccatacccgtacatctccagttataaaaagatcacactaagtggtaatatactagttacccatttattagta
gi|2 : aaagcagggaacataattCACTGAATTTGCTTGTCACAGATTGTTATGGCCCCTAATTCTGCCCATTACAAAGTCCAAGTTGTCAGGTATATTACAATTACAATTGATTTGTATTTATATGGATTGATAGGTTCATATTCT--CTCAAAAACATTATTTCCATAGATCATTTCTGCCACTCAATATACAAGAAAATAGCATTTTTAGACAAACATCTATACTGAATGCAT
gi|2 : gtggggacataaattTGCAGACAACTGCTTACAAAAAGTAAATATCTAAACCTGCTGCATGTTAATTTTGTAAATTTCCTGTCATTTTTTAAGGTTTTGAAAAACG------------------------------GTTTTGTTTATTGTTACAGGCAAATGCCATTGGGAAGAAGCTTGAAGAGTATTTTAAACCGTGGACTGGTTCTATACTGTCTTTATGTTGCTGGGGGTGCCTGnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngtgtgatgttgcaaagacattttcatgcagacaactgcttacaaaaagtaaatatctaaacctgctgcatgttaattttgtaaatttcctgtcattttttaaggttttgaaaaacggttttgtttattgttacaggcaaatgccattgggaagaagcttgaagagtattttaaaccgtggactggttctatactgtctttatgttgctgggggtgcctgacaattatttggcatgttctagagatcttgtactatgaggaaaagtaggaaaagctggtagacatagccttgagattcaatgccctcacaaagtaagatatttttctaaatgctgaatatatattctatataatacttgttaatgatgaagtataaaattgcacacagatattcaaatttatcactttttatcaacagtaaatacttcagtatttctctcatacattgtccttattaaattgcccttaattatcaactgtcttccatcttcagccagc
gi|2 : gtggggacataaattcactgaatttgcttgtcacagattgttatggcccctaattctgcccattacaaagtccaagttgtcaggtatattacaattacaattgatttgtatttatatggattgataggttcatattctctcaaaaacattatttccatagatcatttctgccactcaatatacaagaaaatagcatttttagacaaacatctatactgaatgcatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngtgtgatgttgcaaagacattttcaGACAATTATTTGGCATGTTCTAGAGATCTTGTACTATGAGGAAAAGTAGGAAAAGCTGGTAGACATAGCCTTGAGATTCAATGCCCTCACAAAGTAAGATATTTTTCTAAATGCTGAATATATATTCTATA--TA-------------ATACTTGTTAATGATGAAGTATAAAATTGCACACAGATATTCAAATTTATCACTTTTTATCAACAGTAAATACTTCAGTATTTCTCTCATACATTGTCCTTATTAAATTGCCCTTAATTATCAACTGTCTTCCATCTTCAGCCAGCacaattatttggcatgttctagagatcttgtactatgaggaaaagtaggaaaagctggtagacatagccttgagattcaatgccctcacaaagtaagatatttttctaaatgctgaatatatattctatataatacttgttaatgatgaagtataaaattgcacacagatattcaaatttatcactttttatcaacagtaaatacttcagtatttctctcatacattgtccttattaaattgcccttaattatcaactgtcttccatcttcagccagc
gi|3 : gtggggacataaattcactgaatttgcttgtcacagattgttatggcccctaattctgcccattacaaagtccaagttgtcaggtatattacaattacaattgatttgtatttatatggattgataggttcatattctctcaaaaacattatttccatagatcatttctgccactcaatatacaagaaaatagcatttttagacaaacatctatactgaatgcatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngtgtgatgttgcaaagacattttcatgcagacaactgcttacaaaaagtaaatatctaaacctgctgcatgttaattttgtaaatttcctgtcattttttaaggttttgaaaaacggttttgtttattgttacaggcaaatgccattgggaagaagcttgaagagtattttaaaccgtggactggttctatactgtctttatgttgctgggggtgcctCCTGTCTTCAATTTGAGAATCCAGTAGACAACTAGACTGATCTAGATGCTTGTTTTATCAGACAATTATTTGGCGTGTTCTAGAGATCTTGTGCTGTGAGGAAAAGTGGGAAATGCTGGTAGACATAGCCTTGAGGTTGAATGCCCTCACAAAGTAAGATATTTTTCTATATGCTGGATATATATTCTATA--TATATATATATATATATACTTGT--AT-ATGAAGTATAAAATTGCACACAAATATTCAAATTTATTGCTTATTATCAACAGTTAATACTTCGGTACTTTTCTCATACATTGTCCTTATTAAATTGCCCTTAATTATCAATTGTCCACCATCTTCAGCCAGCA
gi|4 : CACTGAATTTGCTTGTCACAGATTGTTACTGCCCCTAAGTCTGCCCATTACAAAGTCCAAGTTGTCAGGTATATTACAATTCCAGTTGATTTGTATTTATATGGATTGATTGGTTCATA-CCTTC-TCAAAAACATTTTTTTCATATATCATTTCTGCCTCTCATTATACAAGAAAATAGTATTTTTAGACAAACACCTATACCGGACGCATnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncttcctaccaccaatagttaccatacccgtacatctccagttataaaaagatcacactaagtggtaatatactagttacccatttattagta
gi|4 : gggggggcataaattTGCAGACAACTGCTTACAAAAAGTTAATGTTTAAACCTGCTGCATGTTAATGTTGTAAATTTCCTATCATTTTTAAAGACATTGAAAAATGTACATTGCATTG-----CAATGCATCAATTGTTTTGTTTACTGTTACATGCAAATGCCAATGGGAAGAAGCTTAGAGAGTATTTTAGACCTTGGACTGGTTCTATA-----TTAATGAAGCTGGGGGTGCCTGTCTTCAATTTGAGAATCCAGTAGACAACTAGACTGAnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntgcagacaactgcttacaaaaagttaatgtttaaacctgctgcatgttaatgttgtaaatttcctatcatttttaaagacattgaaaaatgtacattgcattgcaatgcatcaattgttttgtttactgttacatgcaaatgccaatgggaagaagcttagagagtattttagaccttggactggttctatattaatgaagctgggggtgcctgtcttcaatttgagaatccagtagacaactagactgaa
gi|5 : gggggggcataaattcactgaatttgcttgtcacagattgttactgcccctaagtctgcccattacaaagtccaagttgtcaggtatattacaattccagttgatttgtatttatatggattgattggttcataccttctcaaaaacatttttttcatatatcatttctgcctctcattatacaagaaaatagtatttttagacaaacacctataccggacgcatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnACTGAATTTGCTTGTCACAGATTGTTATTGCCCCTAAGTCTGCCCATTACAAAGTCCAAGTTGTCAGGTATATTACAATTCCAGTTGATTTGTATTTATATGGATTGATTGGTTCATA-CCTGAATCAAAAACATTTTTTTCATATATCATTTCTGCCTCTCATTATACAAGAAAATAGCATTTTTAGACAAACACCTATACCGGACGCATa
gi|5 : TGCAGACAACTGCTTACAAAAAGTTAATGTTTAAACCTGCTGCATGTTAATGTTGTAAATTTCCTATCATTTTTAAAGACATTGAAAAATGTACATTGCATTG-----CAATGCATCAACTATTTTGTTTACTGTTACAGGCAAATGnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntgcagacaactgcttacaaaaagttaatgtttaaacctgctgcatgttaatgttgtaaatttcctatcatttttaaagacattgaaaaatgtacattgcattgcaatgcatcaactattttgtttactgttacaggcaaatg
gi|6 : actgaatttgcttgtcacagattgttattgcccctaagtctgcccattacaaagtccaagttgtcaggtatattacaattccagttgatttgtatttatatggattgattggttcatacctgaatcaaaaacatttttttcatatatcatttctgcctctcattatacaagaaaatagcatttttagacaaacacctataccggacgcatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnCTTCCTACCACCAATAGTTGCCATACCCATACATCTCCAGTTATAAGA-GATCACACTAAGTGGTAATATACTAGTTACCCATTTATTAGT
13 sequences could not be aligned to this reference sequence:
Unaligned ( gi|7 ): GGGGGTTTTGGTGCAATAACTTCGGAAACCCTAATTCAATTCTTTTGAAAACAAGTGGGGGACATAAATTCACTGAATTTGCTT
Unaligned ( gi|8 ): AAAAATGTCTGAATCACATATTTTGAAAAAAGCGGGGAACATAAATTCACTAAATTTGCTTGTTA
Unaligned ( gi|9 ): CTTGAATCAAATCTTTTAAAAAAGAGAGGGACATCAATTTACTGAATTTGCTTGT
Unaligned ( gi|10 ): GGGGGACATAAATTCACAGAATTTGCTTGCTATAATTTGCTTATAGCTTCTC
Unaligned ( gi|11 ): AAGTGGGGGACATAAACTCACTGAATTTGCTTGTTAT
Unaligned ( gi|12 ): AAAGTGGAAGACATAAATTCCCTGAATTTGCTTGTTT
Unaligned ( gi|13 ): AAGTGGGGGACATAAATTCGCTGAATATGCTTGTTA
Unaligned ( gi|14 ): ATAATTTCAAAACCGTAGTTTGGAAAACCTTTATTC
Unaligned ( gi|15 ): AGCGAGGGACATAAATTCCCTGAATTTGCTTGTTA
Unaligned ( gi|17 ): AAGCGGGGGACACAAATTCACAGAATTTGCTTGT
Unaligned ( gi|18 ): AGCGGGGACATAAATTCACTGAATTTGCTTCTTT
Unaligned ( gi|19 ): AAGCGGGGGACATAATTTCCCTGAATTTGCTTG
Unaligned ( gi|20 ): GGGACATAAATTCACTGAATTTGCTTGTTA
Alignments
lowQualScore : 1 222 9999999999 33333 22222 11 1 2
lowQualScore : 0 111 3 4444444444 0 33333 1 33333 88 3 0 0 1 0 6
lowQualScore : . ... . .......... . ..... . ..... .. . . . . . .
lowQualScore : 0 000 2 5555555555 2 33333 0 77777 33 3 7 7 0 7 7
consensus : CACTGAATTTGCTTGTCACAGATTGTTATTGCCCCTAAGTCTGCCCATTACAAAGTCCAAGTTGTCAGGTATATTACAATTCCAGTTGATTTGTATTTATATGGATTGATTGGTTCATA-CCTGAATCAAAAACATTTTTTTCATATATCATTTCTGCCTCTCATTATACAAGAAAATAGCATTTTTAGACAAACACCTATACCGGACGCATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGCAGACAACTGCTTACAAAAAGTTAATGTTTAAACCTGCTGCATGTTAATGTTGTAAATTTCCTATCATTTTTAAAGACATTGAAAAATGTACATTGCATTG-----CAATGCATCAACTGTTTTGTTTACTGTTACAGGCAAATGCCAATGGGAAGAAGCTTGGAGAGTATTTTAGACCTTGGACTGGTTCTATA-----TTAATGAAGCTGGGGGTGCCTGTCTTCAATTTGAGAATCCAGTAGACAACTAGACTGANCTAGATGCTTGTTTTATCAGACAATTATTTGGCGTGTTCTAGAGATCTTGTGCTGTGAGGAAAAGTGGGAAATGCTGGTAGACATAGCCTTGAGGTTGAATGCCCTCACAAAGTAAGATATTTTTCTATATGCTGGATATATATTCTATA--TATATATATATATATATACTTGT--AT-ATGAAGTATAAAATTGCACACAAATATTCAAATTTATCGCTTATTATCAACAGTTAATACTTCGGTACTTTTCTCATACATTGTCCTTATTAAATTGCCCTTAATTATCAATTGTCCACCATCTTCAGCCAGCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTTCCTACCACCAATAGTTACCATACCCGTACATCTCCAGTTATAAAAAGATCACACTAAGTGGTAATATACTAGTTACCCATTTATTAGT
Reference ( family-4218 ) : CACTGAATTTGCTTGTCACAGATTGTTATTGCCCCTAAGTCTGCCCATTACAAAGTCCAAGTTGTCAGGTATATTACAATTCCAGTTGATTTGTATTTATATGGATTGATTGGTTCATA-CCTGAATCAAAAACATTTTTTTCATATATCATTTCTGCCTCTCATTATACAAGAAAATAGCATTTTTAGACAAACACCTATACCGGACGCATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGCAGACAACTGCTTACAAAAAGTTAATGTTTAAACCTGCTGCATGTTAATGTTGTAAATTTCCTATCATTTTTAAAGACATTGAAAAATGTACATTG-----CATTGCAATGCATCAACTGTTTTGTTTACTGTTACAGGCAAATGCCAATGGGAAGAAGCTTGGAGAGTATTTTAGACCTTGGACTGGTTCTATA-----TTAATGAAGCTGGGGGTGCCTGTCTTCAATTTGAGAATCCAGTAGACAACTAGACTGANCTAGATGCTTGTTTTATCAGACAATTATTTGGCGTGTTCTAGAGATCTTGTGCTGTGAGGAAAAGTGGGAAATGCTGGTAGACATAGCCTTGAGGTTGAATGCCCTCACAAAGTAAGATATTTTTCTATATGCTGGATATATATTCTATA--TATATATATATATATATACTTGT--AT-ATGAAGTATAAAATTGCACACAAATATTCAAATTTATCGCTTATTATCAACAGTTAATACTTCGGTACTTTTCTCATACATTGTCCTTATTAAATTGCCCTTAATTATCAATTGTCCACCATCTTCAGCCAGCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTTCCTACCACCAATAGTTGCCATACCCATACATCTCCAGTTATAAGA-GATCACACTAAGTGGTAATATACTAGTTACCCATTTATTAGT
gi|1 : CACTGAATTTGCTTGTCACAGATTGTTATTGCCCCTAAGTCTGCCCATTACAAAGTCCAAGTTGTCAGGTATATTACAATTCCAGTTGATTTGTATTTATATGGATTGATTGGTTCATA-CCTGAATCAAAAACATTTTTTTCATATATCATTTCTGCCTCTCATTATACAAGAAAATAGCATTTTTAGTCAAACACCTATACCGGACGCAT
gi|1 : TGCAGACAACTGCTTACAAAAAGTTAATGTTTAAACCTGCTGCAAGTTAATGTTGTAAATTTCCTATCATTTTTAAAGACATTGAAAAATGTACATTG-----CATTGCAATGCATCAACTATTTTGTTTACTGTTACAGGCAAATGCCAATGGGAAGAAGCTTGGAGAGTATTTTAGACCTTGGACTGGTTCTATA-----TTAATGAAGCGGGGGGTGCCTGTCTTCAATTTGAGAATCCAGTAGACAACTAGACTGAACTAGATGCTTGTTTTATCAGACAATTATTTGGCGTGTTCTAGAGATCTTGTGCTGTGAGGAAAAGTGGGAAATGCTGGTAGACATAGCCTTGAGGTTGAATGCCCTCACAAAGTAAGATATTTTTCTATATGCTGGATATATATTCTATATA--TATATATATATATATACTTGT--AT-ATGAAGTATAAAATTGCACACAAATATTCAAATTTATTGCTTATTATCAACAGTTAATACTTCGGTACTTTTCTCATACATTGTCCTTATTAAATTGCCCTTAATTATCAATTGTCCACCATCTTCATCCAGCAnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntgcagacaactgcttacaaaaagttaatgtttaaacctgctgcaagttaatgttgtaaatttcctatcatttttaaagacattgaaaaatgtacattgcattgcaatgcatcaactattttgtttactgttacaggcaaatgccaatgggaagaagcttggagagtattttagaccttggactggttctatattaatgaagcggggggtgcctgtcttcaatttgagaatccagtagacaactagactgaactagatgcttgttttatcagacaattatttggcgtgttctagagatcttgtgctgtgaggaaaagtgggaaatgctggtagacatagccttgaggttgaatgccctcacaaagtaagatatttttctatatgctggatatatattctatatatatatatatatatatacttgtatatgaagtataaaattgcacacaaatattcaaatttattgcttattatcaacagttaatacttcggtacttttctcatacattgtccttattaaattgcccttaattatcaattgtccaccatcttcatccagcannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncttcctaccaccaatagttaccatacccgtacatctccagttataaaaagatcacactaagtggtaatatactagttacccatttattagta
gi|1 : cactgaatttgcttgtcacagattgttattgcccctaagtctgcccattacaaagtccaagttgtcaggtatattacaattccagttgatttgtatttatatggattgattggttcatacctgaatcaaaaacatttttttcatatatcatttctgcctctcattatacaagaaaatagcatttttagtcaaacacctataccggacgcatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnCTTCCTACCACCAATAGTTACCATACCCGTACATCTCCAGTTATAAAAAGATCACACTAAGTGGTAATATACTAGTTACCCATTTATTAGTnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncttcctaccaccaatagttaccatacccgtacatctccagttataaaaagatcacactaagtggtaatatactagttacccatttattagta
gi|16 : cactgaatttgcttgtcacagattgttattgcccctaagtctgcccattacaaagtccaagttgtcaggtatattacaattccagttgatttgtatttatatggattgattggttcatacctgaatcaaaaacatttttttcatatatcatttctgcctctcattatacaagaaaatagcatttttagtcaaacacctataccggacgcatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntgcagacaactgcttacaaaaagttaatgtttaaacctgctgcaagttaatgttgtaaatttcctatcatttttaaagacattgaaaaatgtacattgcattgcaatgcatcaactattttgtttactgttacaggcaaatgccaatgggaagaagcttggagagtattttagaccttggactggttctatattaatgaagcggggggtgcctgtcttcaatttgagaatccagtagacaactagactgaactagatgcttgttttatcagacaattatttggcgtgttctagagatcttgtgctgtgaggaaaagtgggaaatgctggtagacatagccttgaggttgaatgccctcacaaagtaagatatttttctatatgctggatatatattctatatatatatatatatatatacttgtatatgaagtataaaattgcacacaaatattcaaatttattgcttattatcaacagttaatacttcggtacttttctcatacattgtccttattaaattgcccttaattatcaattgtccaccatcttcatccagcannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnCACTGAATTTGCTTGTCa
gi|2 : aaagcagggaacataattCACTGAATTTGCTTGTCACAGATTGTTATGGCCCCTAATTCTGCCCATTACAAAGTCCAAGTTGTCAGGTATATTACAATTACAATTGATTTGTATTTATATGGATTGATAGGTTCATATTCT--CTCAAAAACATTATTTCCATAGATCATTTCTGCCACTCAATATACAAGAAAATAGCATTTTTAGACAAACATCTATACTGAATGCAT
gi|2 : gtggggacataaattTGCAGACAACTGCTTACAAAAAGTAAATATCTAAACCTGCTGCATGTTAATTTTGTAAATTTCCTGTCATTTTTTAAGGTTTTGAAAAACG------------------------------GTTTTGTTTATTGTTACAGGCAAATGCCATTGGGAAGAAGCTTGAAGAGTATTTTAAACCGTGGACTGGTTCTATACTGTCTTTATGTTGCTGGGGGTGCCTGnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngtgtgatgttgcaaagacattttcatgcagacaactgcttacaaaaagtaaatatctaaacctgctgcatgttaattttgtaaatttcctgtcattttttaaggttttgaaaaacggttttgtttattgttacaggcaaatgccattgggaagaagcttgaagagtattttaaaccgtggactggttctatactgtctttatgttgctgggggtgcctgacaattatttggcatgttctagagatcttgtactatgaggaaaagtaggaaaagctggtagacatagccttgagattcaatgccctcacaaagtaagatatttttctaaatgctgaatatatattctatataatacttgttaatgatgaagtataaaattgcacacagatattcaaatttatcactttttatcaacagtaaatacttcagtatttctctcatacattgtccttattaaattgcccttaattatcaactgtcttccatcttcagccagc
gi|2 : gtggggacataaattcactgaatttgcttgtcacagattgttatggcccctaattctgcccattacaaagtccaagttgtcaggtatattacaattacaattgatttgtatttatatggattgataggttcatattctctcaaaaacattatttccatagatcatttctgccactcaatatacaagaaaatagcatttttagacaaacatctatactgaatgcatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngtgtgatgttgcaaagacattttcaGACAATTATTTGGCATGTTCTAGAGATCTTGTACTATGAGGAAAAGTAGGAAAAGCTGGTAGACATAGCCTTGAGATTCAATGCCCTCACAAAGTAAGATATTTTTCTAAATGCTGAATATATATTCTATA--TA-------------ATACTTGTTAATGATGAAGTATAAAATTGCACACAGATATTCAAATTTATCACTTTTTATCAACAGTAAATACTTCAGTATTTCTCTCATACATTGTCCTTATTAAATTGCCCTTAATTATCAACTGTCTTCCATCTTCAGCCAGCacaattatttggcatgttctagagatcttgtactatgaggaaaagtaggaaaagctggtagacatagccttgagattcaatgccctcacaaagtaagatatttttctaaatgctgaatatatattctatataatacttgttaatgatgaagtataaaattgcacacagatattcaaatttatcactttttatcaacagtaaatacttcagtatttctctcatacattgtccttattaaattgcccttaattatcaactgtcttccatcttcagccagc
gi|3 : gtggggacataaattcactgaatttgcttgtcacagattgttatggcccctaattctgcccattacaaagtccaagttgtcaggtatattacaattacaattgatttgtatttatatggattgataggttcatattctctcaaaaacattatttccatagatcatttctgccactcaatatacaagaaaatagcatttttagacaaacatctatactgaatgcatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngtgtgatgttgcaaagacattttcatgcagacaactgcttacaaaaagtaaatatctaaacctgctgcatgttaattttgtaaatttcctgtcattttttaaggttttgaaaaacggttttgtttattgttacaggcaaatgccattgggaagaagcttgaagagtattttaaaccgtggactggttctatactgtctttatgttgctgggggtgcctCCTGTCTTCAATTTGAGAATCCAGTAGACAACTAGACTGATCTAGATGCTTGTTTTATCAGACAATTATTTGGCGTGTTCTAGAGATCTTGTGCTGTGAGGAAAAGTGGGAAATGCTGGTAGACATAGCCTTGAGGTTGAATGCCCTCACAAAGTAAGATATTTTTCTATATGCTGGATATATATTCTATA--TATATATATATATATATACTTGT--AT-ATGAAGTATAAAATTGCACACAAATATTCAAATTTATTGCTTATTATCAACAGTTAATACTTCGGTACTTTTCTCATACATTGTCCTTATTAAATTGCCCTTAATTATCAATTGTCCACCATCTTCAGCCAGCA
gi|3 : CTTCCTACCACCAATAGTTACCATACCCGTACATCTCCAGTTATAAAAAGATCACACTAAGTGGTAATATACTAGTTACCCATTTATTAGTnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncttcctaccaccaatagttaccatacccgtacatctccagttataaaaagatcacactaagtggtaatatactagttacccatttattagta
gi|4 : cctgtcttcaatttgagaatccagtagacaactagactgatctagatgcttgttttatcagacaattatttggcgtgttctagagatcttgtgctgtgaggaaaagtgggaaatgctggtagacatagccttgaggttgaatgccctcacaaagtaagatatttttctatatgctggatatatattctatatatatatatatatatatacttgtatatgaagtataaaattgcacacaaatattcaaatttattgcttattatcaacagttaatacttcggtacttttctcatacattgtccttattaaattgcccttaattatcaattgtccaccatcttcagccagcannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnCACTGAATTTGCTTGTCACAGATTGTTACTGCCCCTAAGTCTGCCCATTACAAAGTCCAAGTTGTCAGGTATATTACAATTCCAGTTGATTTGTATTTATATGGATTGATTGGTTCATA-CCTTC-TCAAAAACATTTTTTTCATATATCATTTCTGCCTCTCATTATACAAGAAAATAGTATTTTTAGACAAACACCTATACCGGACGCATa
gi|4 : gggggggcataaattTGCAGACAACTGCTTACAAAAAGTTAATGTTTAAACCTGCTGCATGTTAATGTTGTAAATTTCCTATCATTTTTAAAGACATTGAAAAATGTACATTGCATTG-----CAATGCATCAATTGTTTTGTTTACTGTTACATGCAAATGCCAATGGGAAGAAGCTTAGAGAGTATTTTAGACCTTGGACTGGTTCTATA-----TTAATGAAGCTGGGGGTGCCTGTCTTCAATTTGAGAATCCAGTAGACAACTAGACTGAnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntgcagacaactgcttacaaaaagttaatgtttaaacctgctgcatgttaatgttgtaaatttcctatcatttttaaagacattgaaaaatgtacattgcattgcaatgcatcaattgttttgtttactgttacatgcaaatgccaatgggaagaagcttagagagtattttagaccttggactggttctatattaatgaagctgggggtgcctgtcttcaatttgagaatccagtagacaactagactgaa
gi|5 : gggggggcataaattcactgaatttgcttgtcacagattgttactgcccctaagtctgcccattacaaagtccaagttgtcaggtatattacaattccagttgatttgtatttatatggattgattggttcataccttctcaaaaacatttttttcatatatcatttctgcctctcattatacaagaaaatagtatttttagacaaacacctataccggacgcatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnACTGAATTTGCTTGTCACAGATTGTTATTGCCCCTAAGTCTGCCCATTACAAAGTCCAAGTTGTCAGGTATATTACAATTCCAGTTGATTTGTATTTATATGGATTGATTGGTTCATA-CCTGAATCAAAAACATTTTTTTCATATATCATTTCTGCCTCTCATTATACAAGAAAATAGCATTTTTAGACAAACACCTATACCGGACGCATa
gi|5 : TGCAGACAACTGCTTACAAAAAGTTAATGTTTAAACCTGCTGCATGTTAATGTTGTAAATTTCCTATCATTTTTAAAGACATTGAAAAATGTACATTGCATTG-----CAATGCATCAACTATTTTGTTTACTGTTACAGGCAAATGnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntgcagacaactgcttacaaaaagttaatgtttaaacctgctgcatgttaatgttgtaaatttcctatcatttttaaagacattgaaaaatgtacattgcattgcaatgcatcaactattttgtttactgttacaggcaaatg
gi|6 : actgaatttgcttgtcacagattgttattgcccctaagtctgcccattacaaagtccaagttgtcaggtatattacaattccagttgatttgtatttatatggattgattggttcatacctgaatcaaaaacatttttttcatatatcatttctgcctctcattatacaagaaaatagcatttttagacaaacacctataccggacgcatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnCTTCCTACCACCAATAGTTGCCATACCCATACATCTCCAGTTATAAGA-GATCACACTAAGTGGTAATATACTAGTTACCCATTTATTAGT
13 sequences could not be aligned to this reference sequence:
Unaligned ( gi|7 ): GGGGGTTTTGGTGCAATAACTTCGGAAACCCTAATTCAATTCTTTTGAAAACAAGTGGGGGACATAAATTCACTGAATTTGCTT
Unaligned ( gi|8 ): AAAAATGTCTGAATCACATATTTTGAAAAAAGCGGGGAACATAAATTCACTAAATTTGCTTGTTA
Unaligned ( gi|9 ): CTTGAATCAAATCTTTTAAAAAAGAGAGGGACATCAATTTACTGAATTTGCTTGT
Unaligned ( gi|10 ): GGGGGACATAAATTCACAGAATTTGCTTGCTATAATTTGCTTATAGCTTCTC
Unaligned ( gi|11 ): AAGTGGGGGACATAAACTCACTGAATTTGCTTGTTAT
Unaligned ( gi|12 ): AAAGTGGAAGACATAAATTCCCTGAATTTGCTTGTTT
Unaligned ( gi|13 ): AAGTGGGGGACATAAATTCGCTGAATATGCTTGTTA
Unaligned ( gi|14 ): ATAATTTCAAAACCGTAGTTTGGAAAACCTTTATTC
Unaligned ( gi|15 ): AGCGAGGGACATAAATTCCCTGAATTTGCTTGTTA
Unaligned ( gi|17 ): AAGCGGGGGACACAAATTCACAGAATTTGCTTGT
Unaligned ( gi|18 ): AGCGGGGACATAAATTCACTGAATTTGCTTCTTT
Unaligned ( gi|19 ): AAGCGGGGGACATAATTTCCCTGAATTTGCTTG
Unaligned ( gi|20 ): GGGACATAAATTCACTGAATTTGCTTGTTA
Alignments
lowQualScore : 1 222 9999999999 33333 22222 11 1 4
lowQualScore : 0 111 3 4444444444 0 33333 1 33333 88 3 0 6 6 6 0
lowQualScore : . ... . .......... . ..... . ..... .. . . . . . .
lowQualScore : 0 000 2 5555555555 2 33333 0 77777 33 3 7 0 0 0 0
consensus : CACTGAATTTGCTTGTCACAGATTGTTATTGCCCCTAAGTCTGCCCATTACAAAGTCCAAGTTGTCAGGTATATTACAATTCCAGTTGATTTGTATTTATATGGATTGATTGGTTCATA-CCTGAATCAAAAACATTTTTTTCATATATCATTTCTGCCTCTCATTATACAAGAAAATAGCATTTTTAGACAAACACCTATACCGGACGCATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGCAGACAACTGCTTACAAAAAGTTAATGTTTAAACCTGCTGCATGTTAATGTTGTAAATTTCCTATCATTTTTAAAGACATTGAAAAATGTACATTGCATTG-----CAATGCATCAACTGTTTTGTTTACTGTTACAGGCAAATGCCAATGGGAAGAAGCTTGGAGAGTATTTTAGACCTTGGACTGGTTCTATA-----TTAATGAAGCTGGGGGTGCCTGTCTTCAATTTGAGAATCCAGTAGACAACTAGACTGANCTAGATGCTTGTTTTATCAGACAATTATTTGGCGTGTTCTAGAGATCTTGTGCTGTGAGGAAAAGTGGGAAATGCTGGTAGACATAGCCTTGAGGTTGAATGCCCTCACAAAGTAAGATATTTTTCTATATGCTGGATATATATTCTATA--TATATATATATATATATACTTGT--AT-ATGAAGTATAAAATTGCACACAAATATTCAAATTTATCGCTTATTATCAACAGTTAATACTTCGGTACTTTTCTCATACATTGTCCTTATTAAATTGCCCTTAATTATCAATTGTCCACCATCTTCAGCCAGCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTTCCTACCACCAATAGTTGCCATACCCATACATCTCCAGTTATAAGA-GATCACACTAAGTGGTAATATACTAGTTACCCATTTATTAGT
Reference ( family-4218 ) : CACTGAATTTGCTTGTCACAGATTGTTATTGCCCCTAAGTCTGCCCATTACAAAGTCCAAGTTGTCAGGTATATTACAATTCCAGTTGATTTGTATTTATATGGATTGATTGGTTCATA-CCTGAATCAAAAACATTTTTTTCATATATCATTTCTGCCTCTCATTATACAAGAAAATAGCATTTTTAGACAAACACCTATACCGGACGCATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGCAGACAACTGCTTACAAAAAGTTAATGTTTAAACCTGCTGCATGTTAATGTTGTAAATTTCCTATCATTTTTAAAGACATTGAAAAATGTACATTG-----CATTGCAATGCATCAACTGTTTTGTTTACTGTTACAGGCAAATGCCAATGGGAAGAAGCTTGGAGAGTATTTTAGACCTTGGACTGGTTCTATA-----TTAATGAAGCTGGGGGTGCCTGTCTTCAATTTGAGAATCCAGTAGACAACTAGACTGANCTAGATGCTTGTTTTATCAGACAATTATTTGGCGTGTTCTAGAGATCTTGTGCTGTGAGGAAAAGTGGGAAATGCTGGTAGACATAGCCTTGAGGTTGAATGCCCTCACAAAGTAAGATATTTTTCTATATGCTGGATATATATTCTATA--TATATATATATATATATACTTGT--AT-ATGAAGTATAAAATTGCACACAAATATTCAAATTTATCGCTTATTATCAACAGTTAATACTTCGGTACTTTTCTCATACATTGTCCTTATTAAATTGCCCTTAATTATCAATTGTCCACCATCTTCAGCCAGCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTTCCTACCACCAATAGTTACCATACCCGTACATCTCCAGTTATAAAAAGATCACACTAAGTGGTAATATACTAGTTACCCATTTATTAGT
gi|1 : CACTGAATTTGCTTGTCACAGATTGTTATTGCCCCTAAGTCTGCCCATTACAAAGTCCAAGTTGTCAGGTATATTACAATTCCAGTTGATTTGTATTTATATGGATTGATTGGTTCATA-CCTGAATCAAAAACATTTTTTTCATATATCATTTCTGCCTCTCATTATACAAGAAAATAGCATTTTTAGTCAAACACCTATACCGGACGCAT
gi|1 : TGCAGACAACTGCTTACAAAAAGTTAATGTTTAAACCTGCTGCAAGTTAATGTTGTAAATTTCCTATCATTTTTAAAGACATTGAAAAATGTACATTG-----CATTGCAATGCATCAACTATTTTGTTTACTGTTACAGGCAAATGCCAATGGGAAGAAGCTTGGAGAGTATTTTAGACCTTGGACTGGTTCTATA-----TTAATGAAGCGGGGGGTGCCTGTCTTCAATTTGAGAATCCAGTAGACAACTAGACTGAACTAGATGCTTGTTTTATCAGACAATTATTTGGCGTGTTCTAGAGATCTTGTGCTGTGAGGAAAAGTGGGAAATGCTGGTAGACATAGCCTTGAGGTTGAATGCCCTCACAAAGTAAGATATTTTTCTATATGCTGGATATATATTCTATATA--TATATATATATATATACTTGT--AT-ATGAAGTATAAAATTGCACACAAATATTCAAATTTATTGCTTATTATCAACAGTTAATACTTCGGTACTTTTCTCATACATTGTCCTTATTAAATTGCCCTTAATTATCAATTGTCCACCATCTTCATCCAGCAnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntgcagacaactgcttacaaaaagttaatgtttaaacctgctgcaagttaatgttgtaaatttcctatcatttttaaagacattgaaaaatgtacattgcattgcaatgcatcaactattttgtttactgttacaggcaaatgccaatgggaagaagcttggagagtattttagaccttggactggttctatattaatgaagcggggggtgcctgtcttcaatttgagaatccagtagacaactagactgaactagatgcttgttttatcagacaattatttggcgtgttctagagatcttgtgctgtgaggaaaagtgggaaatgctggtagacatagccttgaggttgaatgccctcacaaagtaagatatttttctatatgctggatatatattctatatatatatatatatatatacttgtatatgaagtataaaattgcacacaaatattcaaatttattgcttattatcaacagttaatacttcggtacttttctcatacattgtccttattaaattgcccttaattatcaattgtccaccatcttcatccagcannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncttcctaccaccaatagttaccatacccgtacatctccagttataaaaagatcacactaagtggtaatatactagttacccatttattagta
gi|16 : cactgaatttgcttgtcacagattgttattgcccctaagtctgcccattacaaagtccaagttgtcaggtatattacaattccagttgatttgtatttatatggattgattggttcatacctgaatcaaaaacatttttttcatatatcatttctgcctctcattatacaagaaaatagcatttttagtcaaacacctataccggacgcatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnCACTGAATTTGCTTGTCnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncttcctaccaccaatagttaccatacccgtacatctccagttataaaaagatcacactaagtggtaatatactagttacccatttattagta
gi|2 : aaagcagggaacataattCACTGAATTTGCTTGTCACAGATTGTTATGGCCCCTAATTCTGCCCATTACAAAGTCCAAGTTGTCAGGTATATTACAATTACAATTGATTTGTATTTATATGGATTGATAGGTTCATATTCT--CTCAAAAACATTATTTCCATAGATCATTTCTGCCACTCAATATACAAGAAAATAGCATTTTTAGACAAACATCTATACTGAATGCAT
gi|2 : gtggggacataaattTGCAGACAACTGCTTACAAAAAGTAAATATCTAAACCTGCTGCATGTTAATTTTGTAAATTTCCTGTCATTTTTTAAGGTTTTGAAAAACG------------------------------GTTTTGTTTATTGTTACAGGCAAATGCCATTGGGAAGAAGCTTGAAGAGTATTTTAAACCGTGGACTGGTTCTATACTGTCTTTATGTTGCTGGGGGTGCCTGnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngtgtgatgttgcaaagacattttcatgcagacaactgcttacaaaaagtaaatatctaaacctgctgcatgttaattttgtaaatttcctgtcattttttaaggttttgaaaaacggttttgtttattgttacaggcaaatgccattgggaagaagcttgaagagtattttaaaccgtggactggttctatactgtctttatgttgctgggggtgcctgacaattatttggcatgttctagagatcttgtactatgaggaaaagtaggaaaagctggtagacatagccttgagattcaatgccctcacaaagtaagatatttttctaaatgctgaatatatattctatataatacttgttaatgatgaagtataaaattgcacacagatattcaaatttatcactttttatcaacagtaaatacttcagtatttctctcatacattgtccttattaaattgcccttaattatcaactgtcttccatcttcagccagc
gi|2 : gtggggacataaattcactgaatttgcttgtcacagattgttatggcccctaattctgcccattacaaagtccaagttgtcaggtatattacaattacaattgatttgtatttatatggattgataggttcatattctctcaaaaacattatttccatagatcatttctgccactcaatatacaagaaaatagcatttttagacaaacatctatactgaatgcatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngtgtgatgttgcaaagacattttcaGACAATTATTTGGCATGTTCTAGAGATCTTGTACTATGAGGAAAAGTAGGAAAAGCTGGTAGACATAGCCTTGAGATTCAATGCCCTCACAAAGTAAGATATTTTTCTAAATGCTGAATATATATTCTATA--TA-------------ATACTTGTTAATGATGAAGTATAAAATTGCACACAGATATTCAAATTTATCACTTTTTATCAACAGTAAATACTTCAGTATTTCTCTCATACATTGTCCTTATTAAATTGCCCTTAATTATCAACTGTCTTCCATCTTCAGCCAGCacaattatttggcatgttctagagatcttgtactatgaggaaaagtaggaaaagctggtagacatagccttgagattcaatgccctcacaaagtaagatatttttctaaatgctgaatatatattctatataatacttgttaatgatgaagtataaaattgcacacagatattcaaatttatcactttttatcaacagtaaatacttcagtatttctctcatacattgtccttattaaattgcccttaattatcaactgtcttccatcttcagccagc
gi|3 : gtggggacataaattcactgaatttgcttgtcacagattgttatggcccctaattctgcccattacaaagtccaagttgtcaggtatattacaattacaattgatttgtatttatatggattgataggttcatattctctcaaaaacattatttccatagatcatttctgccactcaatatacaagaaaatagcatttttagacaaacatctatactgaatgcatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngtgtgatgttgcaaagacattttcatgcagacaactgcttacaaaaagtaaatatctaaacctgctgcatgttaattttgtaaatttcctgtcattttttaaggttttgaaaaacggttttgtttattgttacaggcaaatgccattgggaagaagcttgaagagtattttaaaccgtggactggttctatactgtctttatgttgctgggggtgcctCCTGTCTTCAATTTGAGAATCCAGTAGACAACTAGACTGATCTAGATGCTTGTTTTATCAGACAATTATTTGGCGTGTTCTAGAGATCTTGTGCTGTGAGGAAAAGTGGGAAATGCTGGTAGACATAGCCTTGAGGTTGAATGCCCTCACAAAGTAAGATATTTTTCTATATGCTGGATATATATTCTATA--TATATATATATATATATACTTGT--AT-ATGAAGTATAAAATTGCACACAAATATTCAAATTTATTGCTTATTATCAACAGTTAATACTTCGGTACTTTTCTCATACATTGTCCTTATTAAATTGCCCTTAATTATCAATTGTCCACCATCTTCAGCCAGCA
gi|4 : CACTGAATTTGCTTGTCACAGATTGTTACTGCCCCTAAGTCTGCCCATTACAAAGTCCAAGTTGTCAGGTATATTACAATTCCAGTTGATTTGTATTTATATGGATTGATTGGTTCATA-CCTTC-TCAAAAACATTTTTTTCATATATCATTTCTGCCTCTCATTATACAAGAAAATAGTATTTTTAGACAAACACCTATACCGGACGCATnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncttcctaccaccaatagttaccatacccgtacatctccagttataaaaagatcacactaagtggtaatatactagttacccatttattagta
gi|4 : gggggggcataaattTGCAGACAACTGCTTACAAAAAGTTAATGTTTAAACCTGCTGCATGTTAATGTTGTAAATTTCCTATCATTTTTAAAGACATTGAAAAATGTACATTGCATTG-----CAATGCATCAATTGTTTTGTTTACTGTTACATGCAAATGCCAATGGGAAGAAGCTTAGAGAGTATTTTAGACCTTGGACTGGTTCTATA-----TTAATGAAGCTGGGGGTGCCTGTCTTCAATTTGAGAATCCAGTAGACAACTAGACTGAnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntgcagacaactgcttacaaaaagttaatgtttaaacctgctgcatgttaatgttgtaaatttcctatcatttttaaagacattgaaaaatgtacattgcattgcaatgcatcaattgttttgtttactgttacatgcaaatgccaatgggaagaagcttagagagtattttagaccttggactggttctatattaatgaagctgggggtgcctgtcttcaatttgagaatccagtagacaactagactgaa
gi|5 : gggggggcataaattcactgaatttgcttgtcacagattgttactgcccctaagtctgcccattacaaagtccaagttgtcaggtatattacaattccagttgatttgtatttatatggattgattggttcataccttctcaaaaacatttttttcatatatcatttctgcctctcattatacaagaaaatagtatttttagacaaacacctataccggacgcatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnACTGAATTTGCTTGTCACAGATTGTTATTGCCCCTAAGTCTGCCCATTACAAAGTCCAAGTTGTCAGGTATATTACAATTCCAGTTGATTTGTATTTATATGGATTGATTGGTTCATA-CCTGAATCAAAAACATTTTTTTCATATATCATTTCTGCCTCTCATTATACAAGAAAATAGCATTTTTAGACAAACACCTATACCGGACGCATa
gi|5 : TGCAGACAACTGCTTACAAAAAGTTAATGTTTAAACCTGCTGCATGTTAATGTTGTAAATTTCCTATCATTTTTAAAGACATTGAAAAATGTACATTGCATTG-----CAATGCATCAACTATTTTGTTTACTGTTACAGGCAAATGnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntgcagacaactgcttacaaaaagttaatgtttaaacctgctgcatgttaatgttgtaaatttcctatcatttttaaagacattgaaaaatgtacattgcattgcaatgcatcaactattttgtttactgttacaggcaaatg
gi|6 : actgaatttgcttgtcacagattgttattgcccctaagtctgcccattacaaagtccaagttgtcaggtatattacaattccagttgatttgtatttatatggattgattggttcatacctgaatcaaaaacatttttttcatatatcatttctgcctctcattatacaagaaaatagcatttttagacaaacacctataccggacgcatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnCTTCCTACCACCAATAGTTGCCATACCCATACATCTCCAGTTATAAGA-GATCACACTAAGTGGTAATATACTAGTTACCCATTTATTAGT
13 sequences could not be aligned to this reference sequence:
Unaligned ( gi|7 ): GGGGGTTTTGGTGCAATAACTTCGGAAACCCTAATTCAATTCTTTTGAAAACAAGTGGGGGACATAAATTCACTGAATTTGCTT
Unaligned ( gi|8 ): AAAAATGTCTGAATCACATATTTTGAAAAAAGCGGGGAACATAAATTCACTAAATTTGCTTGTTA
Unaligned ( gi|9 ): CTTGAATCAAATCTTTTAAAAAAGAGAGGGACATCAATTTACTGAATTTGCTTGT
Unaligned ( gi|10 ): GGGGGACATAAATTCACAGAATTTGCTTGCTATAATTTGCTTATAGCTTCTC
Unaligned ( gi|11 ): AAGTGGGGGACATAAACTCACTGAATTTGCTTGTTAT
Unaligned ( gi|12 ): AAAGTGGAAGACATAAATTCCCTGAATTTGCTTGTTT
Unaligned ( gi|13 ): AAGTGGGGGACATAAATTCGCTGAATATGCTTGTTA
Unaligned ( gi|14 ): ATAATTTCAAAACCGTAGTTTGGAAAACCTTTATTC
Unaligned ( gi|15 ): AGCGAGGGACATAAATTCCCTGAATTTGCTTGTTA
Unaligned ( gi|17 ): AAGCGGGGGACACAAATTCACAGAATTTGCTTGT
Unaligned ( gi|18 ): AGCGGGGACATAAATTCACTGAATTTGCTTCTTT
Unaligned ( gi|19 ): AAGCGGGGGACATAATTTCCCTGAATTTGCTTG
Unaligned ( gi|20 ): GGGACATAAATTCACTGAATTTGCTTGTTA
Alignments
lowQualScore : 1 222 9999999999 33333 22222 11 1 2
lowQualScore : 0 111 3 4444444444 0 33333 1 33333 88 3 0 0 1 0 6
lowQualScore : . ... . .......... . ..... . ..... .. . . . . . .
lowQualScore : 0 000 2 5555555555 2 33333 0 77777 33 3 7 7 0 7 7
consensus : CACTGAATTTGCTTGTCACAGATTGTTATTGCCCCTAAGTCTGCCCATTACAAAGTCCAAGTTGTCAGGTATATTACAATTCCAGTTGATTTGTATTTATATGGATTGATTGGTTCATA-CCTGAATCAAAAACATTTTTTTCATATATCATTTCTGCCTCTCATTATACAAGAAAATAGCATTTTTAGACAAACACCTATACCGGACGCATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGCAGACAACTGCTTACAAAAAGTTAATGTTTAAACCTGCTGCATGTTAATGTTGTAAATTTCCTATCATTTTTAAAGACATTGAAAAATGTACATTGCATTG-----CAATGCATCAACTGTTTTGTTTACTGTTACAGGCAAATGCCAATGGGAAGAAGCTTGGAGAGTATTTTAGACCTTGGACTGGTTCTATA-----TTAATGAAGCTGGGGGTGCCTGTCTTCAATTTGAGAATCCAGTAGACAACTAGACTGANCTAGATGCTTGTTTTATCAGACAATTATTTGGCGTGTTCTAGAGATCTTGTGCTGTGAGGAAAAGTGGGAAATGCTGGTAGACATAGCCTTGAGGTTGAATGCCCTCACAAAGTAAGATATTTTTCTATATGCTGGATATATATTCTATA--TATATATATATATATATACTTGT--AT-ATGAAGTATAAAATTGCACACAAATATTCAAATTTATCGCTTATTATCAACAGTTAATACTTCGGTACTTTTCTCATACATTGTCCTTATTAAATTGCCCTTAATTATCAATTGTCCACCATCTTCAGCCAGCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTTCCTACCACCAATAGTTACCATACCCGTACATCTCCAGTTATAAAAAGATCACACTAAGTGGTAATATACTAGTTACCCATTTATTAGT
Reference ( family-4218 ) : CACTGAATTTGCTTGTCACAGATTGTTATTGCCCCTAAGTCTGCCCATTACAAAGTCCAAGTTGTCAGGTATATTACAATTCCAGTTGATTTGTATTTATATGGATTGATTGGTTCATA-CCTGAATCAAAAACATTTTTTTCATATATCATTTCTGCCTCTCATTATACAAGAAAATAGCATTTTTAGACAAACACCTATACCGGACGCATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGCAGACAACTGCTTACAAAAAGTTAATGTTTAAACCTGCTGCATGTTAATGTTGTAAATTTCCTATCATTTTTAAAGACATTGAAAAATGTACATTG-----CATTGCAATGCATCAACTGTTTTGTTTACTGTTACAGGCAAATGCCAATGGGAAGAAGCTTGGAGAGTATTTTAGACCTTGGACTGGTTCTATA-----TTAATGAAGCTGGGGGTGCCTGTCTTCAATTTGAGAATCCAGTAGACAACTAGACTGANCTAGATGCTTGTTTTATCAGACAATTATTTGGCGTGTTCTAGAGATCTTGTGCTGTGAGGAAAAGTGGGAAATGCTGGTAGACATAGCCTTGAGGTTGAATGCCCTCACAAAGTAAGATATTTTTCTATATGCTGGATATATATTCTATA--TATATATATATATATATACTTGT--AT-ATGAAGTATAAAATTGCACACAAATATTCAAATTTATCGCTTATTATCAACAGTTAATACTTCGGTACTTTTCTCATACATTGTCCTTATTAAATTGCCCTTAATTATCAATTGTCCACCATCTTCAGCCAGCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTTCCTACCACCAATAGTTGCCATACCCATACATCTCCAGTTATAAGA-GATCACACTAAGTGGTAATATACTAGTTACCCATTTATTAGT
gi|1 : CACTGAATTTGCTTGTCACAGATTGTTATTGCCCCTAAGTCTGCCCATTACAAAGTCCAAGTTGTCAGGTATATTACAATTCCAGTTGATTTGTATTTATATGGATTGATTGGTTCATA-CCTGAATCAAAAACATTTTTTTCATATATCATTTCTGCCTCTCATTATACAAGAAAATAGCATTTTTAGTCAAACACCTATACCGGACGCAT
gi|1 : TGCAGACAACTGCTTACAAAAAGTTAATGTTTAAACCTGCTGCAAGTTAATGTTGTAAATTTCCTATCATTTTTAAAGACATTGAAAAATGTACATTG-----CATTGCAATGCATCAACTATTTTGTTTACTGTTACAGGCAAATGCCAATGGGAAGAAGCTTGGAGAGTATTTTAGACCTTGGACTGGTTCTATA-----TTAATGAAGCGGGGGGTGCCTGTCTTCAATTTGAGAATCCAGTAGACAACTAGACTGAACTAGATGCTTGTTTTATCAGACAATTATTTGGCGTGTTCTAGAGATCTTGTGCTGTGAGGAAAAGTGGGAAATGCTGGTAGACATAGCCTTGAGGTTGAATGCCCTCACAAAGTAAGATATTTTTCTATATGCTGGATATATATTCTATATA--TATATATATATATATACTTGT--AT-ATGAAGTATAAAATTGCACACAAATATTCAAATTTATTGCTTATTATCAACAGTTAATACTTCGGTACTTTTCTCATACATTGTCCTTATTAAATTGCCCTTAATTATCAATTGTCCACCATCTTCATCCAGCAnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntgcagacaactgcttacaaaaagttaatgtttaaacctgctgcaagttaatgttgtaaatttcctatcatttttaaagacattgaaaaatgtacattgcattgcaatgcatcaactattttgtttactgttacaggcaaatgccaatgggaagaagcttggagagtattttagaccttggactggttctatattaatgaagcggggggtgcctgtcttcaatttgagaatccagtagacaactagactgaactagatgcttgttttatcagacaattatttggcgtgttctagagatcttgtgctgtgaggaaaagtgggaaatgctggtagacatagccttgaggttgaatgccctcacaaagtaagatatttttctatatgctggatatatattctatatatatatatatatatatacttgtatatgaagtataaaattgcacacaaatattcaaatttattgcttattatcaacagttaatacttcggtacttttctcatacattgtccttattaaattgcccttaattatcaattgtccaccatcttcatccagcannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncttcctaccaccaatagttaccatacccgtacatctccagttataaaaagatcacactaagtggtaatatactagttacccatttattagta
gi|1 : cactgaatttgcttgtcacagattgttattgcccctaagtctgcccattacaaagtccaagttgtcaggtatattacaattccagttgatttgtatttatatggattgattggttcatacctgaatcaaaaacatttttttcatatatcatttctgcctctcattatacaagaaaatagcatttttagtcaaacacctataccggacgcatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnCTTCCTACCACCAATAGTTACCATACCCGTACATCTCCAGTTATAAAAAGATCACACTAAGTGGTAATATACTAGTTACCCATTTATTAGTnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncttcctaccaccaatagttaccatacccgtacatctccagttataaaaagatcacactaagtggtaatatactagttacccatttattagta
gi|16 : cactgaatttgcttgtcacagattgttattgcccctaagtctgcccattacaaagtccaagttgtcaggtatattacaattccagttgatttgtatttatatggattgattggttcatacctgaatcaaaaacatttttttcatatatcatttctgcctctcattatacaagaaaatagcatttttagtcaaacacctataccggacgcatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntgcagacaactgcttacaaaaagttaatgtttaaacctgctgcaagttaatgttgtaaatttcctatcatttttaaagacattgaaaaatgtacattgcattgcaatgcatcaactattttgtttactgttacaggcaaatgccaatgggaagaagcttggagagtattttagaccttggactggttctatattaatgaagcggggggtgcctgtcttcaatttgagaatccagtagacaactagactgaactagatgcttgttttatcagacaattatttggcgtgttctagagatcttgtgctgtgaggaaaagtgggaaatgctggtagacatagccttgaggttgaatgccctcacaaagtaagatatttttctatatgctggatatatattctatatatatatatatatatatacttgtatatgaagtataaaattgcacacaaatattcaaatttattgcttattatcaacagttaatacttcggtacttttctcatacattgtccttattaaattgcccttaattatcaattgtccaccatcttcatccagcannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnCACTGAATTTGCTTGTCa
gi|2 : aaagcagggaacataattCACTGAATTTGCTTGTCACAGATTGTTATGGCCCCTAATTCTGCCCATTACAAAGTCCAAGTTGTCAGGTATATTACAATTACAATTGATTTGTATTTATATGGATTGATAGGTTCATATTCT--CTCAAAAACATTATTTCCATAGATCATTTCTGCCACTCAATATACAAGAAAATAGCATTTTTAGACAAACATCTATACTGAATGCAT
gi|2 : gtggggacataaattTGCAGACAACTGCTTACAAAAAGTAAATATCTAAACCTGCTGCATGTTAATTTTGTAAATTTCCTGTCATTTTTTAAGGTTTTGAAAAACG------------------------------GTTTTGTTTATTGTTACAGGCAAATGCCATTGGGAAGAAGCTTGAAGAGTATTTTAAACCGTGGACTGGTTCTATACTGTCTTTATGTTGCTGGGGGTGCCTGnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngtgtgatgttgcaaagacattttcatgcagacaactgcttacaaaaagtaaatatctaaacctgctgcatgttaattttgtaaatttcctgtcattttttaaggttttgaaaaacggttttgtttattgttacaggcaaatgccattgggaagaagcttgaagagtattttaaaccgtggactggttctatactgtctttatgttgctgggggtgcctgacaattatttggcatgttctagagatcttgtactatgaggaaaagtaggaaaagctggtagacatagccttgagattcaatgccctcacaaagtaagatatttttctaaatgctgaatatatattctatataatacttgttaatgatgaagtataaaattgcacacagatattcaaatttatcactttttatcaacagtaaatacttcagtatttctctcatacattgtccttattaaattgcccttaattatcaactgtcttccatcttcagccagc
gi|2 : gtggggacataaattcactgaatttgcttgtcacagattgttatggcccctaattctgcccattacaaagtccaagttgtcaggtatattacaattacaattgatttgtatttatatggattgataggttcatattctctcaaaaacattatttccatagatcatttctgccactcaatatacaagaaaatagcatttttagacaaacatctatactgaatgcatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngtgtgatgttgcaaagacattttcaGACAATTATTTGGCATGTTCTAGAGATCTTGTACTATGAGGAAAAGTAGGAAAAGCTGGTAGACATAGCCTTGAGATTCAATGCCCTCACAAAGTAAGATATTTTTCTAAATGCTGAATATATATTCTATA--TA-------------ATACTTGTTAATGATGAAGTATAAAATTGCACACAGATATTCAAATTTATCACTTTTTATCAACAGTAAATACTTCAGTATTTCTCTCATACATTGTCCTTATTAAATTGCCCTTAATTATCAACTGTCTTCCATCTTCAGCCAGCacaattatttggcatgttctagagatcttgtactatgaggaaaagtaggaaaagctggtagacatagccttgagattcaatgccctcacaaagtaagatatttttctaaatgctgaatatatattctatataatacttgttaatgatgaagtataaaattgcacacagatattcaaatttatcactttttatcaacagtaaatacttcagtatttctctcatacattgtccttattaaattgcccttaattatcaactgtcttccatcttcagccagc
gi|3 : gtggggacataaattcactgaatttgcttgtcacagattgttatggcccctaattctgcccattacaaagtccaagttgtcaggtatattacaattacaattgatttgtatttatatggattgataggttcatattctctcaaaaacattatttccatagatcatttctgccactcaatatacaagaaaatagcatttttagacaaacatctatactgaatgcatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngtgtgatgttgcaaagacattttcatgcagacaactgcttacaaaaagtaaatatctaaacctgctgcatgttaattttgtaaatttcctgtcattttttaaggttttgaaaaacggttttgtttattgttacaggcaaatgccattgggaagaagcttgaagagtattttaaaccgtggactggttctatactgtctttatgttgctgggggtgcctCCTGTCTTCAATTTGAGAATCCAGTAGACAACTAGACTGATCTAGATGCTTGTTTTATCAGACAATTATTTGGCGTGTTCTAGAGATCTTGTGCTGTGAGGAAAAGTGGGAAATGCTGGTAGACATAGCCTTGAGGTTGAATGCCCTCACAAAGTAAGATATTTTTCTATATGCTGGATATATATTCTATA--TATATATATATATATATACTTGT--AT-ATGAAGTATAAAATTGCACACAAATATTCAAATTTATTGCTTATTATCAACAGTTAATACTTCGGTACTTTTCTCATACATTGTCCTTATTAAATTGCCCTTAATTATCAATTGTCCACCATCTTCAGCCAGCA
gi|3 : CTTCCTACCACCAATAGTTACCATACCCGTACATCTCCAGTTATAAAAAGATCACACTAAGTGGTAATATACTAGTTACCCATTTATTAGTnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncttcctaccaccaatagttaccatacccgtacatctccagttataaaaagatcacactaagtggtaatatactagttacccatttattagta
gi|4 : cctgtcttcaatttgagaatccagtagacaactagactgatctagatgcttgttttatcagacaattatttggcgtgttctagagatcttgtgctgtgaggaaaagtgggaaatgctggtagacatagccttgaggttgaatgccctcacaaagtaagatatttttctatatgctggatatatattctatatatatatatatatatatacttgtatatgaagtataaaattgcacacaaatattcaaatttattgcttattatcaacagttaatacttcggtacttttctcatacattgtccttattaaattgcccttaattatcaattgtccaccatcttcagccagcannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnCACTGAATTTGCTTGTCACAGATTGTTACTGCCCCTAAGTCTGCCCATTACAAAGTCCAAGTTGTCAGGTATATTACAATTCCAGTTGATTTGTATTTATATGGATTGATTGGTTCATA-CCTTC-TCAAAAACATTTTTTTCATATATCATTTCTGCCTCTCATTATACAAGAAAATAGTATTTTTAGACAAACACCTATACCGGACGCATa
gi|4 : gggggggcataaattTGCAGACAACTGCTTACAAAAAGTTAATGTTTAAACCTGCTGCATGTTAATGTTGTAAATTTCCTATCATTTTTAAAGACATTGAAAAATGTACATTGCATTG-----CAATGCATCAATTGTTTTGTTTACTGTTACATGCAAATGCCAATGGGAAGAAGCTTAGAGAGTATTTTAGACCTTGGACTGGTTCTATA-----TTAATGAAGCTGGGGGTGCCTGTCTTCAATTTGAGAATCCAGTAGACAACTAGACTGAnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntgcagacaactgcttacaaaaagttaatgtttaaacctgctgcatgttaatgttgtaaatttcctatcatttttaaagacattgaaaaatgtacattgcattgcaatgcatcaattgttttgtttactgttacatgcaaatgccaatgggaagaagcttagagagtattttagaccttggactggttctatattaatgaagctgggggtgcctgtcttcaatttgagaatccagtagacaactagactgaa
gi|5 : gggggggcataaattcactgaatttgcttgtcacagattgttactgcccctaagtctgcccattacaaagtccaagttgtcaggtatattacaattccagttgatttgtatttatatggattgattggttcataccttctcaaaaacatttttttcatatatcatttctgcctctcattatacaagaaaatagtatttttagacaaacacctataccggacgcatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnACTGAATTTGCTTGTCACAGATTGTTATTGCCCCTAAGTCTGCCCATTACAAAGTCCAAGTTGTCAGGTATATTACAATTCCAGTTGATTTGTATTTATATGGATTGATTGGTTCATA-CCTGAATCAAAAACATTTTTTTCATATATCATTTCTGCCTCTCATTATACAAGAAAATAGCATTTTTAGACAAACACCTATACCGGACGCATa
gi|5 : TGCAGACAACTGCTTACAAAAAGTTAATGTTTAAACCTGCTGCATGTTAATGTTGTAAATTTCCTATCATTTTTAAAGACATTGAAAAATGTACATTGCATTG-----CAATGCATCAACTATTTTGTTTACTGTTACAGGCAAATGnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntgcagacaactgcttacaaaaagttaatgtttaaacctgctgcatgttaatgttgtaaatttcctatcatttttaaagacattgaaaaatgtacattgcattgcaatgcatcaactattttgtttactgttacaggcaaatg
gi|6 : actgaatttgcttgtcacagattgttattgcccctaagtctgcccattacaaagtccaagttgtcaggtatattacaattccagttgatttgtatttatatggattgattggttcatacctgaatcaaaaacatttttttcatatatcatttctgcctctcattatacaagaaaatagcatttttagacaaacacctataccggacgcatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnCTTCCTACCACCAATAGTTGCCATACCCATACATCTCCAGTTATAAGA-GATCACACTAAGTGGTAATATACTAGTTACCCATTTATTAGT
blockSeqs : T GAA T CATTG CTGTC T TAT TA G G A
blockSeqs : . TC T CATTG . TA . . A .
blockSeqs : . C . .
blockSeqCons :
originalCons : CACTGAATTTGCTTGTCACAGATTGTTATTGCCCCTAAGTCTGCCCATTACAAAGTCCAAGTTGTCAGGTATATTACAATTCCAGTTGATTTGTATTTATATGGATTGATTGGTTCATA-CCTGAATCAAAAACATTTTTTTCATATATCATTTCTGCCTCTCATTATACAAGAAAATAGCATTTTTAGACAAACACCTATACCGGACGCATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGCAGACAACTGCTTACAAAAAGTTAATGTTTAAACCTGCTGCATGTTAATGTTGTAAATTTCCTATCATTTTTAAAGACATTGAAAAATGTACATTGCATTG-----CAATGCATCAACTGTTTTGTTTACTGTTACAGGCAAATGCCAATGGGAAGAAGCTTGGAGAGTATTTTAGACCTTGGACTGGTTCTATA-----TTAATGAAGCTGGGGGTGCCTGTCTTCAATTTGAGAATCCAGTAGACAACTAGACTGANCTAGATGCTTGTTTTATCAGACAATTATTTGGCGTGTTCTAGAGATCTTGTGCTGTGAGGAAAAGTGGGAAATGCTGGTAGACATAGCCTTGAGGTTGAATGCCCTCACAAAGTAAGATATTTTTCTATATGCTGGATATATATTCTATA--TATATATATATATATATACTTGT--AT-ATGAAGTATAAAATTGCACACAAATATTCAAATTTATCGCTTATTATCAACAGTTAATACTTCGGTACTTTTCTCATACATTGTCCTTATTAAATTGCCCTTAATTATCAATTGTCCACCATCTTCAGCCAGCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTTCCTACCACCAATAGTTACCATACCCGTACATCTCCAGTTATAAAAAGATCACACTAAGTGGTAATATACTAGTTACCCATTTATTAGT
finalCons : CACTGAATTTGCTTGTCACAGATTGTTATTGCCCCTAAGTCTGCCCATTACAAAGTCCAAGTTGTCAGGTATATTACAATTCCAGTTGATTTGTATTTATATGGATTGATTGGTTCATA-CCTGAATCAAAAACATTTTTTTCATATATCATTTCTGCCTCTCATTATACAAGAAAATAGCATTTTTAGACAAACACCTATACCGGACGCATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGCAGACAACTGCTTACAAAAAGTTAATGTTTAAACCTGCTGCATGTTAATGTTGTAAATTTCCTATCATTTTTAAAGACATTGAAAAATGTACATTGCATTG-----CAATGCATCAACTGTTTTGTTTACTGTTACAGGCAAATGCCAATGGGAAGAAGCTTGGAGAGTATTTTAGACCTTGGACTGGTTCTATA-----TTAATGAAGCTGGGGGTGCCTGTCTTCAATTTGAGAATCCAGTAGACAACTAGACTGANCTAGATGCTTGTTTTATCAGACAATTATTTGGCGTGTTCTAGAGATCTTGTGCTGTGAGGAAAAGTGGGAAATGCTGGTAGACATAGCCTTGAGGTTGAATGCCCTCACAAAGTAAGATATTTTTCTATATGCTGGATATATATTCTATA--TATATATATATATATATACTTGT--AT-ATGAAGTATAAAATTGCACACAAATATTCAAATTTATCGCTTATTATCAACAGTTAATACTTCGGTACTTTTCTCATACATTGTCCTTATTAAATTGCCCTTAATTATCAATTGTCCACCATCTTCAGCCAGCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTTCCTACCACCAATAGTTACCATACCCGTACATCTCCAGTTATAAAAAGATCACACTAAGTGGTAATATACTAGTTACCCATTTATTAGT
13 sequences could not be aligned to this reference sequence:
Unaligned ( gi|7 ): GGGGGTTTTGGTGCAATAACTTCGGAAACCCTAATTCAATTCTTTTGAAAACAAGTGGGGGACATAAATTCACTGAATTTGCTT
Unaligned ( gi|8 ): AAAAATGTCTGAATCACATATTTTGAAAAAAGCGGGGAACATAAATTCACTAAATTTGCTTGTTA
Unaligned ( gi|9 ): CTTGAATCAAATCTTTTAAAAAAGAGAGGGACATCAATTTACTGAATTTGCTTGT
Unaligned ( gi|10 ): GGGGGACATAAATTCACAGAATTTGCTTGCTATAATTTGCTTATAGCTTCTC
Unaligned ( gi|11 ): AAGTGGGGGACATAAACTCACTGAATTTGCTTGTTAT
Unaligned ( gi|12 ): AAAGTGGAAGACATAAATTCCCTGAATTTGCTTGTTT
Unaligned ( gi|13 ): AAGTGGGGGACATAAATTCGCTGAATATGCTTGTTA
Unaligned ( gi|14 ): ATAATTTCAAAACCGTAGTTTGGAAAACCTTTATTC
Unaligned ( gi|15 ): AGCGAGGGACATAAATTCCCTGAATTTGCTTGTTA
Unaligned ( gi|17 ): AAGCGGGGGACACAAATTCACAGAATTTGCTTGT
Unaligned ( gi|18 ): AGCGGGGACATAAATTCACTGAATTTGCTTCTTT
Unaligned ( gi|19 ): AAGCGGGGGACATAATTTCCCTGAATTTGCTTG
Unaligned ( gi|20 ): GGGACATAAATTCACTGAATTTGCTTGTTA
Alignments
lowQualScore : 1 222 9999999999 33333 22222 11 1 4
lowQualScore : 0 111 3 4444444444 0 33333 1 33333 88 3 0 6 6 6 0
lowQualScore : . ... . .......... . ..... . ..... .. . . . . . .
lowQualScore : 0 000 2 5555555555 2 33333 0 77777 33 3 7 0 0 0 0
consensus : CACTGAATTTGCTTGTCACAGATTGTTATTGCCCCTAAGTCTGCCCATTACAAAGTCCAAGTTGTCAGGTATATTACAATTCCAGTTGATTTGTATTTATATGGATTGATTGGTTCATA-CCTGAATCAAAAACATTTTTTTCATATATCATTTCTGCCTCTCATTATACAAGAAAATAGCATTTTTAGACAAACACCTATACCGGACGCATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGCAGACAACTGCTTACAAAAAGTTAATGTTTAAACCTGCTGCATGTTAATGTTGTAAATTTCCTATCATTTTTAAAGACATTGAAAAATGTACATTGCATTG-----CAATGCATCAACTGTTTTGTTTACTGTTACAGGCAAATGCCAATGGGAAGAAGCTTGGAGAGTATTTTAGACCTTGGACTGGTTCTATA-----TTAATGAAGCTGGGGGTGCCTGTCTTCAATTTGAGAATCCAGTAGACAACTAGACTGANCTAGATGCTTGTTTTATCAGACAATTATTTGGCGTGTTCTAGAGATCTTGTGCTGTGAGGAAAAGTGGGAAATGCTGGTAGACATAGCCTTGAGGTTGAATGCCCTCACAAAGTAAGATATTTTTCTATATGCTGGATATATATTCTATA--TATATATATATATATATACTTGT--AT-ATGAAGTATAAAATTGCACACAAATATTCAAATTTATCGCTTATTATCAACAGTTAATACTTCGGTACTTTTCTCATACATTGTCCTTATTAAATTGCCCTTAATTATCAATTGTCCACCATCTTCAGCCAGCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTTCCTACCACCAATAGTTGCCATACCCATACATCTCCAGTTATAAGA-GATCACACTAAGTGGTAATATACTAGTTACCCATTTATTAGT
Reference ( family-4218 ) : CACTGAATTTGCTTGTCACAGATTGTTATTGCCCCTAAGTCTGCCCATTACAAAGTCCAAGTTGTCAGGTATATTACAATTCCAGTTGATTTGTATTTATATGGATTGATTGGTTCATA-CCTGAATCAAAAACATTTTTTTCATATATCATTTCTGCCTCTCATTATACAAGAAAATAGCATTTTTAGACAAACACCTATACCGGACGCATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGCAGACAACTGCTTACAAAAAGTTAATGTTTAAACCTGCTGCATGTTAATGTTGTAAATTTCCTATCATTTTTAAAGACATTGAAAAATGTACATTG-----CATTGCAATGCATCAACTGTTTTGTTTACTGTTACAGGCAAATGCCAATGGGAAGAAGCTTGGAGAGTATTTTAGACCTTGGACTGGTTCTATA-----TTAATGAAGCTGGGGGTGCCTGTCTTCAATTTGAGAATCCAGTAGACAACTAGACTGANCTAGATGCTTGTTTTATCAGACAATTATTTGGCGTGTTCTAGAGATCTTGTGCTGTGAGGAAAAGTGGGAAATGCTGGTAGACATAGCCTTGAGGTTGAATGCCCTCACAAAGTAAGATATTTTTCTATATGCTGGATATATATTCTATA--TATATATATATATATATACTTGT--AT-ATGAAGTATAAAATTGCACACAAATATTCAAATTTATCGCTTATTATCAACAGTTAATACTTCGGTACTTTTCTCATACATTGTCCTTATTAAATTGCCCTTAATTATCAATTGTCCACCATCTTCAGCCAGCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTTCCTACCACCAATAGTTACCATACCCGTACATCTCCAGTTATAAAAAGATCACACTAAGTGGTAATATACTAGTTACCCATTTATTAGT
gi|1 : CACTGAATTTGCTTGTCACAGATTGTTATTGCCCCTAAGTCTGCCCATTACAAAGTCCAAGTTGTCAGGTATATTACAATTCCAGTTGATTTGTATTTATATGGATTGATTGGTTCATA-CCTGAATCAAAAACATTTTTTTCATATATCATTTCTGCCTCTCATTATACAAGAAAATAGCATTTTTAGTCAAACACCTATACCGGACGCAT
gi|1 : TGCAGACAACTGCTTACAAAAAGTTAATGTTTAAACCTGCTGCAAGTTAATGTTGTAAATTTCCTATCATTTTTAAAGACATTGAAAAATGTACATTG-----CATTGCAATGCATCAACTATTTTGTTTACTGTTACAGGCAAATGCCAATGGGAAGAAGCTTGGAGAGTATTTTAGACCTTGGACTGGTTCTATA-----TTAATGAAGCGGGGGGTGCCTGTCTTCAATTTGAGAATCCAGTAGACAACTAGACTGAACTAGATGCTTGTTTTATCAGACAATTATTTGGCGTGTTCTAGAGATCTTGTGCTGTGAGGAAAAGTGGGAAATGCTGGTAGACATAGCCTTGAGGTTGAATGCCCTCACAAAGTAAGATATTTTTCTATATGCTGGATATATATTCTATATA--TATATATATATATATACTTGT--AT-ATGAAGTATAAAATTGCACACAAATATTCAAATTTATTGCTTATTATCAACAGTTAATACTTCGGTACTTTTCTCATACATTGTCCTTATTAAATTGCCCTTAATTATCAATTGTCCACCATCTTCATCCAGCAnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntgcagacaactgcttacaaaaagttaatgtttaaacctgctgcaagttaatgttgtaaatttcctatcatttttaaagacattgaaaaatgtacattgcattgcaatgcatcaactattttgtttactgttacaggcaaatgccaatgggaagaagcttggagagtattttagaccttggactggttctatattaatgaagcggggggtgcctgtcttcaatttgagaatccagtagacaactagactgaactagatgcttgttttatcagacaattatttggcgtgttctagagatcttgtgctgtgaggaaaagtgggaaatgctggtagacatagccttgaggttgaatgccctcacaaagtaagatatttttctatatgctggatatatattctatatatatatatatatatatacttgtatatgaagtataaaattgcacacaaatattcaaatttattgcttattatcaacagttaatacttcggtacttttctcatacattgtccttattaaattgcccttaattatcaattgtccaccatcttcatccagcannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncttcctaccaccaatagttaccatacccgtacatctccagttataaaaagatcacactaagtggtaatatactagttacccatttattagta
gi|16 : cactgaatttgcttgtcacagattgttattgcccctaagtctgcccattacaaagtccaagttgtcaggtatattacaattccagttgatttgtatttatatggattgattggttcatacctgaatcaaaaacatttttttcatatatcatttctgcctctcattatacaagaaaatagcatttttagtcaaacacctataccggacgcatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnCACTGAATTTGCTTGTCnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncttcctaccaccaatagttaccatacccgtacatctccagttataaaaagatcacactaagtggtaatatactagttacccatttattagta
gi|2 : aaagcagggaacataattCACTGAATTTGCTTGTCACAGATTGTTATGGCCCCTAATTCTGCCCATTACAAAGTCCAAGTTGTCAGGTATATTACAATTACAATTGATTTGTATTTATATGGATTGATAGGTTCATATTCT--CTCAAAAACATTATTTCCATAGATCATTTCTGCCACTCAATATACAAGAAAATAGCATTTTTAGACAAACATCTATACTGAATGCAT
gi|2 : gtggggacataaattTGCAGACAACTGCTTACAAAAAGTAAATATCTAAACCTGCTGCATGTTAATTTTGTAAATTTCCTGTCATTTTTTAAGGTTTTGAAAAACG------------------------------GTTTTGTTTATTGTTACAGGCAAATGCCATTGGGAAGAAGCTTGAAGAGTATTTTAAACCGTGGACTGGTTCTATACTGTCTTTATGTTGCTGGGGGTGCCTGnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngtgtgatgttgcaaagacattttcatgcagacaactgcttacaaaaagtaaatatctaaacctgctgcatgttaattttgtaaatttcctgtcattttttaaggttttgaaaaacggttttgtttattgttacaggcaaatgccattgggaagaagcttgaagagtattttaaaccgtggactggttctatactgtctttatgttgctgggggtgcctgacaattatttggcatgttctagagatcttgtactatgaggaaaagtaggaaaagctggtagacatagccttgagattcaatgccctcacaaagtaagatatttttctaaatgctgaatatatattctatataatacttgttaatgatgaagtataaaattgcacacagatattcaaatttatcactttttatcaacagtaaatacttcagtatttctctcatacattgtccttattaaattgcccttaattatcaactgtcttccatcttcagccagc
gi|2 : gtggggacataaattcactgaatttgcttgtcacagattgttatggcccctaattctgcccattacaaagtccaagttgtcaggtatattacaattacaattgatttgtatttatatggattgataggttcatattctctcaaaaacattatttccatagatcatttctgccactcaatatacaagaaaatagcatttttagacaaacatctatactgaatgcatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngtgtgatgttgcaaagacattttcaGACAATTATTTGGCATGTTCTAGAGATCTTGTACTATGAGGAAAAGTAGGAAAAGCTGGTAGACATAGCCTTGAGATTCAATGCCCTCACAAAGTAAGATATTTTTCTAAATGCTGAATATATATTCTATA--TA-------------ATACTTGTTAATGATGAAGTATAAAATTGCACACAGATATTCAAATTTATCACTTTTTATCAACAGTAAATACTTCAGTATTTCTCTCATACATTGTCCTTATTAAATTGCCCTTAATTATCAACTGTCTTCCATCTTCAGCCAGCacaattatttggcatgttctagagatcttgtactatgaggaaaagtaggaaaagctggtagacatagccttgagattcaatgccctcacaaagtaagatatttttctaaatgctgaatatatattctatataatacttgttaatgatgaagtataaaattgcacacagatattcaaatttatcactttttatcaacagtaaatacttcagtatttctctcatacattgtccttattaaattgcccttaattatcaactgtcttccatcttcagccagc
gi|3 : gtggggacataaattcactgaatttgcttgtcacagattgttatggcccctaattctgcccattacaaagtccaagttgtcaggtatattacaattacaattgatttgtatttatatggattgataggttcatattctctcaaaaacattatttccatagatcatttctgccactcaatatacaagaaaatagcatttttagacaaacatctatactgaatgcatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngtgtgatgttgcaaagacattttcatgcagacaactgcttacaaaaagtaaatatctaaacctgctgcatgttaattttgtaaatttcctgtcattttttaaggttttgaaaaacggttttgtttattgttacaggcaaatgccattgggaagaagcttgaagagtattttaaaccgtggactggttctatactgtctttatgttgctgggggtgcctCCTGTCTTCAATTTGAGAATCCAGTAGACAACTAGACTGATCTAGATGCTTGTTTTATCAGACAATTATTTGGCGTGTTCTAGAGATCTTGTGCTGTGAGGAAAAGTGGGAAATGCTGGTAGACATAGCCTTGAGGTTGAATGCCCTCACAAAGTAAGATATTTTTCTATATGCTGGATATATATTCTATA--TATATATATATATATATACTTGT--AT-ATGAAGTATAAAATTGCACACAAATATTCAAATTTATTGCTTATTATCAACAGTTAATACTTCGGTACTTTTCTCATACATTGTCCTTATTAAATTGCCCTTAATTATCAATTGTCCACCATCTTCAGCCAGCA
gi|4 : CACTGAATTTGCTTGTCACAGATTGTTACTGCCCCTAAGTCTGCCCATTACAAAGTCCAAGTTGTCAGGTATATTACAATTCCAGTTGATTTGTATTTATATGGATTGATTGGTTCATA-CCTTC-TCAAAAACATTTTTTTCATATATCATTTCTGCCTCTCATTATACAAGAAAATAGTATTTTTAGACAAACACCTATACCGGACGCATnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncttcctaccaccaatagttaccatacccgtacatctccagttataaaaagatcacactaagtggtaatatactagttacccatttattagta
gi|4 : gggggggcataaattTGCAGACAACTGCTTACAAAAAGTTAATGTTTAAACCTGCTGCATGTTAATGTTGTAAATTTCCTATCATTTTTAAAGACATTGAAAAATGTACATTGCATTG-----CAATGCATCAATTGTTTTGTTTACTGTTACATGCAAATGCCAATGGGAAGAAGCTTAGAGAGTATTTTAGACCTTGGACTGGTTCTATA-----TTAATGAAGCTGGGGGTGCCTGTCTTCAATTTGAGAATCCAGTAGACAACTAGACTGAnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntgcagacaactgcttacaaaaagttaatgtttaaacctgctgcatgttaatgttgtaaatttcctatcatttttaaagacattgaaaaatgtacattgcattgcaatgcatcaattgttttgtttactgttacatgcaaatgccaatgggaagaagcttagagagtattttagaccttggactggttctatattaatgaagctgggggtgcctgtcttcaatttgagaatccagtagacaactagactgaa
gi|5 : gggggggcataaattcactgaatttgcttgtcacagattgttactgcccctaagtctgcccattacaaagtccaagttgtcaggtatattacaattccagttgatttgtatttatatggattgattggttcataccttctcaaaaacatttttttcatatatcatttctgcctctcattatacaagaaaatagtatttttagacaaacacctataccggacgcatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnACTGAATTTGCTTGTCACAGATTGTTATTGCCCCTAAGTCTGCCCATTACAAAGTCCAAGTTGTCAGGTATATTACAATTCCAGTTGATTTGTATTTATATGGATTGATTGGTTCATA-CCTGAATCAAAAACATTTTTTTCATATATCATTTCTGCCTCTCATTATACAAGAAAATAGCATTTTTAGACAAACACCTATACCGGACGCATa
gi|5 : TGCAGACAACTGCTTACAAAAAGTTAATGTTTAAACCTGCTGCATGTTAATGTTGTAAATTTCCTATCATTTTTAAAGACATTGAAAAATGTACATTGCATTG-----CAATGCATCAACTATTTTGTTTACTGTTACAGGCAAATGnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntgcagacaactgcttacaaaaagttaatgtttaaacctgctgcatgttaatgttgtaaatttcctatcatttttaaagacattgaaaaatgtacattgcattgcaatgcatcaactattttgtttactgttacaggcaaatg
gi|6 : actgaatttgcttgtcacagattgttattgcccctaagtctgcccattacaaagtccaagttgtcaggtatattacaattccagttgatttgtatttatatggattgattggttcatacctgaatcaaaaacatttttttcatatatcatttctgcctctcattatacaagaaaatagcatttttagacaaacacctataccggacgcatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnCTTCCTACCACCAATAGTTGCCATACCCATACATCTCCAGTTATAAGA-GATCACACTAAGTGGTAATATACTAGTTACCCATTTATTAGT
13 sequences could not be aligned to this reference sequence:
Unaligned ( gi|7 ): GGGGGTTTTGGTGCAATAACTTCGGAAACCCTAATTCAATTCTTTTGAAAACAAGTGGGGGACATAAATTCACTGAATTTGCTT
Unaligned ( gi|8 ): AAAAATGTCTGAATCACATATTTTGAAAAAAGCGGGGAACATAAATTCACTAAATTTGCTTGTTA
Unaligned ( gi|9 ): CTTGAATCAAATCTTTTAAAAAAGAGAGGGACATCAATTTACTGAATTTGCTTGT
Unaligned ( gi|10 ): GGGGGACATAAATTCACAGAATTTGCTTGCTATAATTTGCTTATAGCTTCTC
Unaligned ( gi|11 ): AAGTGGGGGACATAAACTCACTGAATTTGCTTGTTAT
Unaligned ( gi|12 ): AAAGTGGAAGACATAAATTCCCTGAATTTGCTTGTTT
Unaligned ( gi|13 ): AAGTGGGGGACATAAATTCGCTGAATATGCTTGTTA
Unaligned ( gi|14 ): ATAATTTCAAAACCGTAGTTTGGAAAACCTTTATTC
Unaligned ( gi|15 ): AGCGAGGGACATAAATTCCCTGAATTTGCTTGTTA
Unaligned ( gi|17 ): AAGCGGGGGACACAAATTCACAGAATTTGCTTGT
Unaligned ( gi|18 ): AGCGGGGACATAAATTCACTGAATTTGCTTCTTT
Unaligned ( gi|19 ): AAGCGGGGGACATAATTTCCCTGAATTTGCTTG
Unaligned ( gi|20 ): GGGACATAAATTCACTGAATTTGCTTGTTA