lowQualScore : 1 11111 22 66666666666666666666666666666666666666666666 1 1 111 11111 1111111 111111111111
lowQualScore : 2 2 1 333 1 6 4 5 333 555555 3333 1 333 777777 4 22222 44 0 5 2 2 333 1 3333 11111111111111111111111111111111111111111111 44444 4 4444 666 3 3 2 333 6666666 2 0 000 99999 333 3333333 000000000000 2 2 888888888 2 7 4
lowQualScore : . . . ... . . . . ... ...... .... . ... ...... . ..... .. . . . . ... . .... ............................................ ..... . .... ... . . . ... ....... . . ... ..... ... ....... ............ . . ......... . . .
lowQualScore : 0 0 5 000 7 4 5 2 222 222222 9999 8 000 444444 4 88888 22 7 0 0 0 222 8 9999 00000000000000000000000000000000000000000000 88888 6 0000 777 8 8 7 555 5555555 0 0 222 22222 555 0000000 222222222222 1 1 444444444 1 7 8
consensus : TATTAACGAGAAATT-TG-ATATATTTATTATAAAT---T-TACACCATATACTACGGACACA---AATCACACAAAATAATATAC------AT----A-CAATTTTGAT---TTTATCATA------TTTACAACATTTACGTGTATCACATTGTAATGCATGACCACGAGGAGATATATTTGCTTTCTTTAATAATAGTGTATTTGTGAAATAATACATAAACTCAGAAAATTTCAA-TTTGTGA-C---AAA-AA----A--------------CT-------G---------CA---------T-----CCCTGGTATATATTCTTCCAAGAAGATAAATAGAATGATACACATTCACCTGCT----G---T-TATACCGAGGTACTAT---ATAAAA-------TG-T-AAA---AAAA----NTGG---TC-------ATTTTGGAAAGATATACACGGAAATG------------G-AACGTCCGTCCCCGTAACGT-CCG---------CCTCCCCCT-CCCCCACCTGCATATACATTCT
Reference ( gi|5 ) : TATTAACGAGAAATT-TG-ATATATTTATTGTAAAT---T-TACGCCATACACTAAGGACACA---AATCACACAAAATAATATAC------AT----A-CAATTTTGAT---TTTATCATA------TTTATAACATTTACGTGTATCACATTGTAATGCATGACCACGAGGAGATATATTTGCTTTCTTTAATAAATGTGTATTTGTGAAATGATACATAAACTCAGAAAATTTCAA-TTTGTGA-C---AAA-AA----A--------------CT-------G---------CA---------T-----CCCTGGTATATATTCTTCCAAGAAGATAAATAGAATGATACACATTCACCTGTT----G---T-TATATCGATGTACTAT---ATAAAA-------TG-T-AAA---AAAA----TTGG---TC-------ATTTTGGAAAGATATACACGGAAATG------------G-AACGTCCGTCCCCGTAACGT-CCG---------CCTCCCCCT-CCCCCACCTGCATAAACATTTT
gi|8 : TATTAACGAGAAATT-TG-ATATATTTATTGTAAAT---T-TACACCATATACTACAGACACA---AATCACACAAAATAATATAC------AT----A-CAATTTTGAT---TTTATCATA------TTTATAACATTTACGTGTATCACATTGTAATGCATGACCACGAGGAGATATATTTGCTTTCTTTAATAAAAGTGTATTTGTGAAATGATACATAAACTCAGAAAATTTCAA-TTTGTGA-C---AAA-AA----A--------------CT-------G---------CA---------T-----CCCTGGTATATATTCTTCCAAGAAGATAAATAGAATGATACACATTCACCTGTT----G---T-TTTACCAAGGTGCTAT---ATAAAA-------TG-TAAAA---AAAA----TTGG---TC-------ATTTTGGAAAGATATACACGGAAATG------------G-AACGTCCGTCCCCGTAACGT-CCG-------------CCCCT-CCCCCACCTGCATACACATTC
gi|6 : TATTAGCGAGAAATT-TG-GTATATTCATTGTAAAT---T-TACACCATATACTACGGACAAA---AATCACACAAAATAATATAC------AT----A-CAATTTTGAT---TATATCATA------TTTACAACATTTACGTGTATCACATTGTAATGCATGACCACGAGGAGATATATTTGCTTTCTTTAATAAAAGTGTATTTGTGAAATGATACATAAACTCAGAAAATTTCAATTTTGTGA-C---AAA-AA----A--------------CT-------G---------CA---------C-----CCCTGGTATATATTCTTCCAAGAAGATAAATAGAATGATACACATTCAGCTGCT----G---T-TATACCGAGGTACTAT---ATAAAA-------TG-T--AA---AACA----TTGG---TC-------ACTTTGGAAAGATATACACGGAAATG------------G-AACGTCCGTCCCCGTAGCGT-CCG---------CCTCCCCCT-TCCCCACCTGTATAAACATTC
gi|9 : TATTAACGAGAAATT-TG-TTATATTTATTGTAAAT---T-TACCCAATATACTACGGACACA---TATCACACAAAATAATATAC------ATGTATA-CAATTTTGAT---TTTATCATA------TTTACAACATTTACGTGTATCACATTGTAATGCATGACCACGAGGAGATATATTTGCTTTCTTTAATAAAAGTGTATTTGTGAAATGATACATAAACTCAGAAAATTTCAA-TTTGTGA-C---AAA-AA----A--------------CT-------A---------CA---------T-----CCCTGGTATATATTCTTCCAAGAAGATGAATAGAA-GGT--------ACCTGCT----G---T-TATACCGAGGTACTAG---GTAAAA-------TG-T-AAA---AAAA----TTGG---TC-------ATTTTGGAAAGATATGCACGGAAACG------------G-AACGCCCGTCCCCGTAACAT-CCG---------CCTCTCCCT-CCCCCATCTGCATAAACATTC
gi|4 : TATTAACGAGAAATT-TG-TTATATTTATTGTAAAT---T-TACACCATATAATACGGACACA---AAACACACAAAATAATATAC------AT----A-CAATTTTGAT---TTGATCATA------TAAACAACATTTACGTGTACCACATTGTAATGCATGATCACGAGGAGATATATTTGCTTTCTTTAATAATAGTGTATTTGTGAAATGATACATAAACTCAGAAAACTTCAT-TTTGTGA-C---AAA-AA----A--------------CT-------G---------CA---------T-----CCCTAGTATATATTCTTCCAAGAAGATAAATAGAATGATACACATTCACCTGCT----G---T-TATACCCAAGTACTAT---ATAAAA-------TG-TAAAA---AAAA----ATGA---TA-------ATTTTGGAAAGATATACACGGAAATG------------G-AACGTCCGTCCGCGTAACGT-CCG---------CCTCACCCTCCCCCCACCTGCGTAAACATT
gi|10 : TATTAACGAGAAATT-TG-TTATATTTATTGTAAAT---T-TACACCATAC-----GGACACA---AATCACACAGACTATTATAC------AT----A-CAATTTTGAT---TT-ATCATA------TTTACAACATTTACGTGTATCACATTGTAATGCATGACCACGACGAGATATATTTGCTTTCTTTTATAATAGTGTATTTGTGAAATGATACATAAACTCAGAAAATTTCAA-TTTGTGA-C----AA-AA----A--------------CT-------G---------CA---------T-----CCCTGTTATATATTCTTCCAATAAGATATATAGAACGACTCACATTCACCTGCT----G---T-TATACCGAGGTACTAT---ATAAAA-------TG-T-AAA---AAAA------GGAGATC-------GTTTTGGAAAGATATACACGGAAATG------------G-AACGTCCGTCCTCATAACGT-CCG---------CCTCCCCCT-CCCCCACCTGCATAAACTTTCcc
gi|3 : TATTAACGAGAAATT-TG-ATATATTTATTATAAAT---T-TACACCATATACTACGGACACA---AATCACACAAAATAATATAC------AT----A-CATTTTTTAT---TTTATCATA------TTTACAACATTTACGTGTATCACATTGTAATGCATGACCACGAGGAGATATATTTG----CTTTAATAATAGTGTATTTGTAAAATAATACATAAACTCAGAAAATTTCTA-TTAGTGA-C---AAA-AA----AACTGTAACAT----CT-------G---------CA---------T-----CCCTGGTATATATTCTTCCAAGAAGATAAATAAAATGAT--ATATTCACCTGCT----G---T-TATACTGAGGTACTAT---ATAAAA-------TG-TAAAA---AAAA----ATGG---TC-------ATTTTGGAAAGATATACAAGGAAATG------------G-AACGTCCGTCCCCGTAACAT-CCC---------CCT-CCCCT-CCCCCACCTGCATATACATTC
gi|11 : TATTAACGAGAAATT-TG-ATATATT----ATAAAT---T-TACACCATATACTACGGACACA---AATCACACAAAATAATATAC------AT----A-CAATTTTGAT---TTTATCATA------TTTACAACATTAACGTGTATCACATTGTAATGCATGACCACGAGGAGATATATTTGCTTT----AATAATAGTGTATTTGTGAAATAATACATAAA--------ATTTCAA-TTTGTGA-C---AAA-AA----AAACTGTAACGT---CT-------G---------CA---------T-----CCCTGGTATATATTCTTCCAAGAAGATAAATAGAATGTTACACATTCACCTGCT----G---T-AATACCGAGGAACTAT---ATAAAA-------TG-T-AAA---AAAA----ATGG---TC-------ATTTTGGAAAGATATACACGGAAATG------------G-AACGTCCGTCCCCGTAACGT-CCG---------CCT-CCCCT-CCCCCACCTGCATATACATTC
gi|2 : TATTAAAGAGAAATT-GG-ATATATTCATTATAAAT---T-TATACCATTTACTACGGACAAA---TATCACACAAAATAATATAC------AT----A-CAATTTTGAT---TTTATCATA------TTTACAACATGTTCGTGTATCACATTGTAATGCATGACTCCGAGGAGATATATTTGCTTTAATTA-TA---GTTTATTTGTGAAATAATACATAAAATAAGAAAATTTTAA-TTTGTGA-C---AAA-AA----AACTGTAACGT----CT-------G---------CA---------T-----CCCTGGTATATATTCTTCCAAGAAGATAAATAGAATGATATACATTCACCTGCT----G---T-TATACCGAGGTACTAT---ATAAAA-------TG-T-AAA---AAAA----ATGG---TT-------ATTTTGGAAAGATATACACGGAAATG------------G-AACGTCCGTCCTCGTGACGT-TCG---------CCTCCCACT-CCCCTACTTGCATATACATT
gi|13 : TATTAACGAGAAATT-TG-ATATATTTATTATAAAT---T-TACACCATATACTACGGACACA--------CACAA--TAATATAC------AT----A-CAATTTTGAT---TTTATCATA------TTTACAACATTTACGTGAATCACAATGTAATGCATGACCACGAGGAAATATATATG----CTTTAATAATAGTGTATTTGTGAAATAATACATAAA-TCAGAAAATTTCAA-TTTGTGA-C---AAA-AA----AACTTTAACGT----CT-------G---------CA---------T-----CCCTGCTATATATTCTTCCAAGAAGATCAATATAATGTTACACATTCACCTGCT----G---T-TATACCGAGGTACTAT---ATAAAA-------TG-T-AAA---AA----------------------ATTTTGGAAAGATATACACGGAAATG------------G-AACGTCCGTCCCCGTAACGT-CCG---------CCTCCCCCT-CCCCCATCTGCATATACc
gi|12 : TATTAACGAGAAATT-TG-ATATATTTATTATATAT---T-CACACCATATACTACGGACACA---AATCACACAAAATAATATAC------AT----A-CAATTTTGAG---TTTATCATA------TTTACAACATTTACGTGTATGATATTGTAATGCATGACCACGAGGAGATATATTTG----CTTTAATAATAGTGTATTTGTGAAATAATACATAAAATCAGAAAATTTCAA-TGTGTGA-C---AAA-AACTGTAACGT----------CT-------G---------CA---------T-----CCCTGGTATATGTTCTTCCAAGAAGATAAATAGAATGATACACATTCACCTGCT----G---T-TATACCGTGGTTCTAT---ATAAAA-------TG-TAAAA---AAAA----AAGG---TC-------ATTTTGGAAAGATATACACGGAAATG------------G-AACG---------------T-CCG---------CCTCTCCCT-CCCCCACCT
gi|19 : TATTAACGAGAAATT-TG-ATATATTGATTATAA-T---T-TACACCATATACTATGGACACA---AATCACACAAAATAATA------------------AATTTTGAT---TTGATCATACATGTATTTACAACAGTTACGTGTATCACATTGTAATGCATGACCACGAGGGGATATATTTG----CTTTAATAATAGTGTATTTGTGAAATAATACATAAAATCAGAAAATTTCAA-TTTGTGACC---AAA-AA----A--------------CT-------GCAA------CA---------TCTGAACCCTGGTATATATTCTTCCAAGAAGATAAATAGAATGATACACATTCTCCTGCT----G---T-TGTAcccccatacattct
gi|21 : TATTAACGATACATT-TG-ATATATCTATTTTAGAT---T-TACAACATATACTACGGACACA---AATCACACAAAATAATATAC------AT----A-CAATTTTGAT---TTTATCATA------TTTACAACATTTACGTGTATCACATTGTAATGCATGACCACGAGGAGATATAT----TTTCATTAATA-------ATTTGTGAAATAATACATAAAATCAGAAAATTTCAT-TTTGTGA-C---AAA-AA----ATTTTTTTATAACGTCT-------G---------CA---------T-----CCCTGGTATATATTCTTCCAAGA
gi|25 : TATTAACGAGAAATT-TG-ATATATTTATTATATAG---T-TAAACCATATACTACGGACACA---AATCACACAAAATAATAAAC------AT----A-CAATTTTGAT---TTTATCATA------TTTACAACATTTACGTGTATCACATTGTAATGCATGACCACGAGGAGATATATTTG----CTTTAATAAAAGTGTATTTGTGAAATAATACATAAATTCAG
gi|26 : TATTAACAAGAAATT-TG-ATATATTTATTATAAAT---T-TACACCATATACTACGGACACA---AATCACACAAAATAATATAC------AT----A-CAATTTTGAT---TTTATCATA------TTTACAACATTTACGTGTATTTCATTGTAATGCATGACCACGA-GATATATATTTG----CTTTAACAATAGTGTATTTGTGAAA
gi|7 : ATTAACAAGAAATT-TG-GTATATTTATTGTAAAT---T-TACACCATATACTATGGACAAA---AATCACACAAAATAATATAC------AT----A-CAATTTTGAT---TTTATCATA------TTTACAACATTTATGTATATCACATTGTAATGCATGACCACGAAGAGATATATTTGCTTTCTTTAATAAAAGTGTATTTGTGAAATGATACATAAACTCAGAAAATTTCAA-TTTGTGA-C---AAA-AA----A--------------CT-------G---------CA---------T-----CCCTGGTATATATTCTTCCAAGAAGATAAATAGAATGATACACATTCACCTGCT----G---T-CATACCAAGGTACTAT---ATAAAA-------TG-T--AA---AAAA----TTGG---TC-------ATTTTGGAAAGATATACACGGAAATG------------G-TATGTCC-TCCCCGTAACGT-CTG---------CCTCCCCCT-CCCCCACCTGCATAAACATTCaagtaaat
gi|14 : cATTAACCAGAAATT-TG-ATATATTTATTGTAAAT---T-TACACCATATACTACGGACACA---AATCACACAAAATGATA----------T----A-CA----------------------------TACAA--------TGTATCACATTGTAATGCATGACCACGAGGAGATATATTTGCTTTCTTTAATAAAAGTGTATTTGTGAAATGATACATAAACTCAGAAAATTTCAA-TTTGTGA-C---AAA-AA----A--------------CT-------G---------CA---------T-----CCCTGGTATATATTCTTCCAAGAAGATCAATAGAATGATACACATTCACCTGCT----G---T-TATACCGAGGTACTAT---ATAAAA-------TG-TAAAA---AAAA----TTGG---TC-------ATTTTGGAAAGATATACACAGAAATG------------G-AACGTCCGTCCCCGTAACGTCCCGTAACGTCCTCCTCCCCCT-ACCCCACCTGCATAAACATTC
gi|20 : ATTAACGAGACATT-AG-CTATATTTATTATAAAT---T-TACATCATACACTACGCACACA---AATCACACAAAGTAATATAC------AT----A-TGTTTTTGAT---TTTATCATA------TTTACAACATTTACATGTATTGCATTGTAATGCATGA-CATGAGGAGATAGA------TTCTTTA--AAATG
gi|1 : TAATGAGAAATT-TG-TTATATTTATTTTAAAT---T-TACACTATATACTAC--ACACA---AATCACACAAAATAATATACCTGTACAT----A-CAATTTTGAT---TTTATCATA------TTTACAACATTTACATGTATCACATTGAAATGCATGAC-ATGAGGAGATATATTTGCTTT----AATAATAGTGTATTTGTGAAATAATACATAAAATCAGAATATTTCAA-TTTGTGA-A---AAACAA----A--------------CTAACGTCTG---------CA---------T-----TCCTGGCTTATATTCATCCAAGAAGATAAATATAATGATACA--TTCACCTGCTTGCTG---T-TATACCGAGGTACTAT---ATAAAA-------TG-T-AAATA-AAAA----GTGG---TC-------TTTTTGGAAAGATATACAAGGAAATG------------G-AACGTCCATCCCCATAGCGT-CTG---------CCTCCCCAT-CCCCCACCTGTATCTACATTCctgctaaacaccatacaacaacaatgatatctgcttaactaaaaaaaacaacaaattttgatacatactggttatatacacttttgaaataataattgtagagtatatacc
gi|27 : GAAATTATACATGTATTTATTATAAATATATATACATCATATAC----AACACATACACCCACACAAAATAATATAT------AT----ATCAG---TGAA---TTTATCAAA------T
gi|17 : AATT-TG-ATATATTTATTATAAAT---T-TATACCAT
gi|16 : ATATTTATCATAAAT---T-TACACCATATACTACGGACACA---AATCACACAAAATGATATAC------AT----A-CAATTTTGAT---TTGATCATA------TTT---ACA------------ACATT-TAA----------------GATATATTTG-----TTTAATAATAGTGTATTTGTGAAATAATACATAAAATCAGAACATTTCAA-TTTGTGA-C---AAA-AA----AACTGTAATGT----CT-------G---------TA---------T-----CCCTGGTATATATTCTTTCAAGCAGATAAATAGAATGATACACATTCACCTGCT----G---T-TATATCGAGGTACTAT---ATAAAA-------TG-T-AAA---AGAA---------------------------AAAGATATACACGGAGATG------------G-AACGTCCGTCCACGTAACGT-CCG---------CCTCCCCCT-CCCCCACCTGCATATACATTCgtatcacattgtaacgcatgaccacgaggagatatatttgctttaataatagtgtatttgtgaaataatacataaaatcagaaaaattcaatttgtgacaaaaaactgtaacgtctgcatccctggtatatatttttccaagaagataaatagaatgatacacattcacctgctgttataccgaggtactatatgaaatgtaaaaaaatggtcattttggaaagatatccacggaaatggaacgtccgtccccgtaacgtccgcctccccttctcccacctgcatatacattct
gi|15 : TAAAT---T-TACACCATATACTACGGACAAA---AATCACACAAAATAATATAC------AT----A-CAATTTTGAT---TTTATCATA------TTTACAACATTTACGTGTATCATATTGTAATACGTGACCACGAGGAGATATATTTG----CTTTAATAATAGTGTATTTGTGAAATAATACATAAACTCAGAAAATTTTAA-TGTGTGA-C---AAA-AA----A--------------CT-------G---------TAACGCCTCTTT-----CCCTGGTATATATTCTTCCAAGAAG-TAAATAGAATGATACACATTCACCTGCT----G---T-TATACCGAGGTACTAT---ATAAAA-------TT-T-AAAAACAAAA----AAGG---TC-------ATTTTGGAAAGATATACACGGAAATG------------G-AACGTCCGTCCACGTAACGT-TCC---------CCTCCCCCT-CCCCTACCTGTATATACATTa
gi|18 : TAAAT---T-TACACTATATACCACGGACACA---AATCACACAAAATGATATAC------CT----A-CAATT--------------ATA------TTGAT-----TT-----TATCATATTA---------ACCGCGAGGAGATATATTTGTTTT----AATAATAGTGTATTTGTGAAATAATACACAAACTCAGAAAATTTCAA-TTTGTGA-C---AAA-AA----c
gi|17 : TTTGATATATTTATTATAAA----TTTATACCAT------GTATCACATTGTAACGCATGACCACGAGGAGATATATTTGCTTT----AATAATAGTGTATTTGTGAAATAATACATAAAATCAGAAAAATTCAA-TTTGTGA-C---AAA-AA----A--------------CT-------GTAACGTCTGCA---------T-----CCCTGGTATATATTTTTCCAAGAAGATAAATAGAATGATACACATTCACCTGCT----G---T-TATACCGAGGTACTAT---ATGAAA-------TG-T-AAA---AAAA-----TGG---TC-------ATTTTGGAAAGATATCCACGGAAATG------------G-AACGTCCGTCCCCGTAACGT-CCG---------CCTCCCCTT-CTCCCACCTGCATATACATTCtgatacacattcacctgctgttataccgaggtactatataaaatgtaaaaaaaaagagagatcattttggaaagatatacacggaaatagaaagtccgtccccgtaacgtccgcctccccctcccccacctgcatatacatttt
gi|22 : aaGTGTATTTGTGAAATAATACATAAAATCAGAAAATTTCAA-TTTGTGA-CCAAAAA-AA----A--------------CT-------GTAACGTATGCA---------T-----CCCTGGTATATATTCTTCCAAGAAGATAAATAGAATGATACACATTCTCCTGCT----G---T-TATACCGAGGTACTAT---ATAAAA-------TG-T-AAA---AAA------TGG---TC-------ATTTTGGAAAGATACACACGGAAATG------------G-AACGTCCGTCCCCGTAACGT-CCA---------CCTCCCCCT-CCCCCACCTGCATATACATTC
gi|23 : atatta---AAA-AA----A--------------CT-------G---------TAACGTCCGTCC-----CCCTGCCATATATTCTTCCAAAAAGATAAACAGAATAATACA--TTTACCTGTT----GACATACATATCCATGTACTAT---ATAAAAAAAAAAGT--T-AAAT--AAAAC---TTGA---TCTGAGCATATTTAAGGAAAATATACACTAAAATGTAAAATTTACATGTAACGTCCGTCCCCGTAACGT-CCG-----------TCCCCCT-
gi|24 : a---AAA-AA----A--------------CT-------G---------TAACGTCCGTCC-----CCCCGCCATATATTCTTCCAAAAAGATAAACAGAATAAT--ACATTCACCTGCT----GACATACATATCCATGTACTATCCAAAAAAA-------AGTT-AAAT--AAAAC---TTGG---TCTGAGCATATTTAAGGATAATATACACTAAAATG------------a
gi|18 : acaGACAAA---AATGATACACATTCACCTGCT----G---T-TATACCGAGGTACTAT---ATAAAA-------TG-T-AAA---AAAAAAGAGAGA---TC-------ATTTTGGAAAGATATACACGGAAATA------------G-AAAGTCCGTCCCCGTAACGT-CCG---------CCTCCCCCT-CCCCCACCTGCATATACATTTtnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn
Alignments
lowQualScore : 55555555555555555555555555555555555555555555 1111111
lowQualScore : 2 2 333 1 555555 3333 1 222 777777 7 4 4 1 1 333 1 3333 66666666666666666666666666666666666666666666 44444 3333 8888 333 6666666 1 9 999 9999 4444 2222222 999999999999 2 2 888888888 2 2 1
lowQualScore : . . ... . ...... .... . ... ...... . . . . . ... . .... ............................................ ..... .... .... ... ....... . . ... .... .... ....... ............ . . ......... . . .
lowQualScore : 0 0 000 7 000000 7777 7 999 111111 0 8 4 9 9 000 7 7777 11111111111111111111111111111111111111111111 55555 9999 1111 333 2222222 9 5 888 9999 0000 4444444 888888888888 0 0 000000000 0 1 4
consensus : TATTAACGAGAAATT-TG-ATATATTTATTGTAAAT---T-TACACCATATACTACGGACACAAATCACACAAAATAATATAC------AT----A-CAATTTTGAT---TTTATCATA------TTTACAACATTTACGTGTATCACATTGTAATGCATGACCACGAGGAGATATATTTGCTTTCTTTAATAATAGTGTATTTGTGAAATAATACATAAACTCAGAAAATTTCAA-TTTGTGA-C---AAA-AA----A--------------CT-------G---------CA---------T-----CCCTGGTATATATTCTTCCAAGAAGATAAATAGAATGATACACATTCACCTGCT----GTTATAC----CGAGGTACTAT---ATAAAA-------TG-T-AAA---AAAA-NT-GG----TC-------ATTTTGGAAAGATATACACGGAAATG------------G-AACGTCCGTCCCCGTAACGT-CCG---------CCTCCCCCT-CCCCCACCT-GCATATACATTCT
Reference ( family-411 ) : TATTAACGAGAAATT-TG-ATATATTTATTATAAAT---T-TACACCATATACTACGGACACAAATCACACAAAATAATATAC------AT----A-CAATTTTGAT---TTTATCATA------TTTACAACATTTACGTGTATCACATTGTAATGCATGACCACGAGGAGATATATTTGCTTTCTTTAATAATAGTGTATTTGTGAAATAATACATAAACTCAGAAAATTTCAA-TTTGTGA-C---AAA-AA----A--------------CT-------G---------CA---------T-----CCCTGGTATATATTCTTCCAAGAAGATAAATAGAATGATACACATTCACCTGCT----GTTATAC----CGAGGTACTAT---ATAAAA-------TG-T-AAA---AAAA-NT-GG----TC-------ATTTTGGAAAGATATACACGGAAATG------------G-AACGTCCGTCCCCGTAACGT-CCG---------CCTCCCCCT-CCCCCACCT-GCATATACATTCT
gi|1 : TAATGAGAAATT-TG-TTATATTTATTTTAAAT---T-TACACTATATACTAC--ACACAAATCACACAAAATAATATACCTGTACAT----A-CAATTTTGAT---TTTATCATA------TTTACAACATTTACATGTATCACATTGAAATGCATGAC-ATGAGGAGATATATTTGCTTT----AATAATAGTGTATTTGTGAAATAATACATAAAATCAGAATATTTCAA-TTTGTGA-A---AAACAA----A--------------CTAACGTCTG---------CA---------T-----TCCTGGCTTATATTCATCCAAGAAGATAAATATAATGATACA--TTCACCTGCTTGCTGTTATAC----CGAGGTACTAT---ATAAAA-------TG-T-AAATA-AAAA-GT-GG----TC-------TTTTTGGAAAGATATACAAGGAAATG------------G-AACGTCCATCCCCATAGCGT-CTG---------CCTCCCCAT-CCCCCACCT-GTATCTACATTCT
gi|10 : TATTAACGAGAAATT-TG-TTATATTTATTGTAAAT---T-TACACCATA-----CGGACACAAATCACACAGACTATTATAC------AT----A-CAATTTTGAT---TT-ATCATA------TTTACAACATTTACGTGTATCACATTGTAATGCATGACCACGACGAGATATATTTGCTTTCTTTTATAATAGTGTATTTGTGAAATGATACATAAACTCAGAAAATTTCAA-TTTGTGA-C----AA-AA----A--------------CT-------G---------CA---------T-----CCCTGTTATATATTCTTCCAATAAGATATATAGAACGACTCACATTCACCTGCT----GTTATAC----CGAGGTACTAT---ATAAAA-------TG-T-AAA---AAAA-GGAGA----TC-------GTTTTGGAAAGATATACACGGAAATG------------G-AACGTCCGTCCTCATAACGT-CCG---------CCTCCCCCT-CCCCCACCT-GCATAAACTTTCT
gi|11 : TATTAACGAGAAATT-TG-ATATATT----ATAAAT---T-TACACCATATACTACGGACACAAATCACACAAAATAATATAC------AT----A-CAATTTTGAT---TTTATCATA------TTTACAACATTAACGTGTATCACATTGTAATGCATGACCACGAGGAGATATATTTGCTTT----AATAATAGTGTATTTGTGAAATAATACATAAA--------ATTTCAA-TTTGTGA-C---AAA-AA----AAACTGTAACGT---CT-------G---------CA---------T-----CCCTGGTATATATTCTTCCAAGAAGATAAATAGAATGTTACACATTCACCTGCT----GTAATAC----CGAGGAACTAT---ATAAAA-------TG-T-AAA---AAAA-AT-GG----TC-------ATTTTGGAAAGATATACACGGAAATG------------G-AACGTCCGTCCCCGTAACGT-CCG---------CCT-CCCCT-CCCCCACCT-GCATATACATTCT
gi|12 : TATTAACGAGAAATT-TG-ATATATTTATTATATAT---T-CACACCATATACTACGGACACAAATCACACAAAATAATATAC------AT----A-CAATTTTGAG---TTTATCATA------TTTACAACATTTACGTGTATGATATTGTAATGCATGACCACGAGGAGATATATTTG----CTTTAATAATAGTGTATTTGTGAAATAATACATAAAATCAGAAAATTTCAA-TGTGTGA-C---AAA-AACTGTAACGT----------CT-------G---------CA---------T-----CCCTGGTATATGTTCTTCCAAGAAGATAAATAGAATGATACACATTCACCTGCT----GTTATAC----CGTGGTTCTAT---ATAAAA-------TG-TAAAA---AAAA-AA-GG----TC-------ATTTTGGAAAGATATACACGGAAATG------------G----------------AACGT-CCG---------CCTCTCCCT-CCCCCACCTCCCCCATACATTCT
gi|13 : TATTAACGAGAAATT-TG-ATATATTTATTATAAAT---T-TACACCATATACTACGGACACA-----CACAA--TAATATAC------AT----A-CAATTTTGAT---TTTATCATA------TTTACAACATTTACGTGAATCACAATGTAATGCATGACCACGAGGAAATATATATG----CTTTAATAATAGTGTATTTGTGAAATAATACATAAA-TCAGAAAATTTCAA-TTTGTGA-C---AAA-AA----AACTTTAACGT----CT-------G---------CA---------T-----CCCTGCTATATATTCTTCCAAGAAGATCAATATAATGTTACACATTCACCTGCT----GTTATAC----CGAGGTACTAT---ATAAAA-------TG-T-AAA---AA---------------------ATTTTGGAAAGATATACACGGAAATG------------G-AACGTCCGTCCCCGTAACGT-CCG---------CCTCCCCCT-CCCCCATCT-GCATATAC
gi|14 : ATTAACCAGAAATT-TG-ATATATTTATTGTAAAT---T-TACACCATATACTACGGACACAAATCACACAAAATGATATAC------A-------------------------------------TACAA--------TGTATCACATTGTAATGCATGACCACGAGGAGATATATTTGCTTTCTTTAATAAAAGTGTATTTGTGAAATGATACATAAACTCAGAAAATTTCAA-TTTGTGA-C---AAA-AA----A--------------CT-------G---------CA---------T-----CCCTGGTATATATTCTTCCAAGAAGATCAATAGAATGATACACATTCACCTGCT----GTTATAC----CGAGGTACTAT---ATAAAA-------TG-TAAAA---AAAA-TT-GG----TC-------ATTTTGGAAAGATATACACAGAAATG------------G-AACGTCCGTCCCCGTAACGTCCCGTAACGTCCTCCTCCCCCT-ACCCCACCT-GCATAAACATTCT
gi|15 : TAAAT---T-TACACCATATACTACGGACAAAAATCACACAAAATAATATAC------AT----A-CAATTTTGAT---TTTATCATA------TTTACAACATTTACGTGTATCATATTGTAATACGTGACCACGAGGAGATATATTTG----CTTTAATAATAGTGTATTTGTGAAATAATACATAAACTCAGAAAATTTTAA-TGTGTGA-C---AAA-AA----A--------------CT-------G---------TAACGCCTCTTT-----CCCTGGTATATATTCTTCCAAGAAG-TAAATAGAATGATACACATTCACCTGCT----GTTATAC----CGAGGTACTAT---ATAAAA-------TT-T-AAAAACAAAA-AA-GG----TC-------ATTTTGGAAAGATATACACGGAAATG------------G-AACGTCCGTCCACGTAACGT-TCC---------CCTCCCCCT-CCCCTACCT-GTATATACATTC
gi|16 : ATATTTATCATAAAT---T-TACACCATATACTACGGACACAAATCACACAAAATGATATAC------AT----A-CAATTTTGAT---TTGATCATA------TTT---ACA------------ACATT-TAA----------------GATATATTTG-----TTTAATAATAGTGTATTTGTGAAATAATACATAAAATCAGAACATTTCAA-TTTGTGA-C---AAA-AA----AACTGTAATGT----CT-------G---------TA---------T-----CCCTGGTATATATTCTTTCAAGCAGATAAATAGAATGATACACATTCACCTGCT----GTTATAT----CGAGGTACTAT---ATAAAA-------TG-T-AAA---AGAA--------------------------AAAGATATACACGGAGATG------------G-AACGTCCGTCCACGTAACGT-CCG---------CCTCCCCCT-CCCCCACCT-GCATATACATTCT
gi|17 : TTTGATATATTTATTATAAA----TTTATACCAT------GTATCACATTGTAACGCATGACCACGAGGAGATATATTTGCTTT----AATAATAGTGTATTTGTGAAATAATACATAAAATCAGAAAAATTCAA-TTTGTGA-C---AAA-AA----A--------------CT-------GTAACGTCTGCA---------T-----CCCTGGTATATATTTTTCCAAGAAGATAAATAGAATGATACACATTCACCTGCT----GTTATAC----CGAGGTACTAT---ATGAAA-------TG-T-AAA---AAAA--T-GG----TC-------ATTTTGGAAAGATATCCACGGAAATG------------G-AACGTCCGTCCCCGTAACGT-CCG---------CCTCCCCTT-CTCCCACCT-GCATATACATTCTa
gi|18 : aaTAAAT---T-TACACTATATACCACGGACACAAATCACACAAAATGATATAC------CT----A-CAATT--------------ATA------TTGA-----TTT-----TATCATATTA---------ACCGCGAGGAGATATATTTGTTTT----AATAATAGTGTATTTGTGAAATAATACACAAACTCAGAAAATTTCAA-TTTGTGA-C---AAA-AA----
gi|18 : GACAAA---AATGATACACATTCACCTGCT----GTTATAC----CGAGGTACTAT---ATAAAA-------TG-T-AAA---AAAA-AA-GAGAGATC-------ATTTTGGAAAGATATACACGGAAATA------------G-AAAGTCCGTCCCCGTAACGT-CCG---------CCTCCCCCT-CCCCCACCT-GCATATACATTTTtgatacacattcacctgctgttataccgaggtactatataaaatgtaaaaaaaaagagagatcattttggaaagatatacacggaaatagaaagtccgtccccgtaacgtccgcctccccctcccccacctgcatatacatttt
gi|19 : taaatttacactatataccacggacacaaatcacacaaaatgatatacctacaattatattgattttatcatattaaccgcgaggagatatatttgttttaataatagtgtatttgtgaaataatacacaaactcagaaaatttcaatttgtTATTAACGAGAAATT-TG-ATATATTGATTATAA-T---T-TACACCATATACTATGGACACAAATCACACAAAATAATA------------------AATTTTGAT---TTGATCATACATGTATTTACAACAGTTACGTGTATCACATTGTAATGCATGACCACGAGGGGATATATTTGCTTT----AATAATAGTGTATTTGTGAAATAATACATAAAATCAGAAAATTTCAA-TTTGTGACC---AAA-AA----A--------------CT-------GCAA------CA---------TCTGAACCCTGGTATATATTCTTCCAAGAAGATAAATAGAATGATACACATTCTCCTGCT----GTTGTA
gi|2 : TATTAAAGAGAAATT-GG-ATATATTCATTATAAAT---T-TATACCATTTACTACGGACAAATATCACACAAAATAATATAC------AT----A-CAATTTTGAT---TTTATCATA------TTTACAACATGTTCGTGTATCACATTGTAATGCATGACTCCGAGGAGATATATTTGCTTT----AATTATAGTTTATTTGTGAAATAATACATAAAATAAGAAAATTTTAA-TTTGTGA-C---AAA-AA----AACTGTAACGT----CT-------G---------CA---------T-----CCCTGGTATATATTCTTCCAAGAAGATAAATAGAATGATATACATTCACCTGCT----GTTATAC----CGAGGTACTAT---ATAAAA-------TG-T-AAA---AAAA-AT-GG----TT-------ATTTTGGAAAGATATACACGGAAATG------------G-AACGTCCGTCCTCGTGACGT-TCG---------CCTCCCACT-CCCCTACTT-GCATATACATTC
gi|20 : ATTAACGAGACATT-AG-CTATATTTATTATAAAT---T-TACATCATACACTACGCACACAAATCACACAAAGTAATATAC------AT----A-TGTTTTTGAT---TTTATCATA------TTTACAACATTTACATGTATTGCATTGTAATGCATGA-CATGAGGAGATAGATT--CTTT
gi|21 : TATTAACGATACATT-TG-ATATATCTATTTTAGAT---T-TACAACATATACTACGGACACAAATCACACAAAATAATATAC------AT----A-CAATTTTGAT---TTTATCATA------TTTACAACATTTACGTGTATCACATTGTAATGCATGACCACGAGGAGATATAT----TTTCATTAATA-------ATTTGTGAAATAATACATAAAATCAGAAAATTTCAT-TTTGTGA-C---AAA-AA----ATTTTTTTATAACGTCT-------G---------CA---------T-----CCCTGGTATATATTCTTCCAAGAaaaatgctgctaaacaccatacaacaacaatgatatctgcttaactaaaaaaaacaacaaattttgatacatactggttatatacacttttgaaataataattgtagagtatatacc
gi|22 : ATATTAGTGTATTTGTGAAATAATACATAAAATCAGAAAATTTCAA-TTTGTGA-CCAAAAA-AA----A--------------CT-------GTAACGTATGCA---------T-----CCCTGGTATATATTCTTCCAAGAAGATAAATAGAATGATACACATTCTCCTGCT----GTTATAC----CGAGGTACTAT---ATAAAA-------TG-T-AAA---AAA---T-GG----TC-------ATTTTGGAAAGATACACACGGAAATG------------G-AACGTCCGTCCCCGTAACGT-CCA---------CCTCCCCCT-CCCCCACCT-GCATATACATTCT
gi|23 : ---AAA-AA----A--------------CT-------G---------TAACGTCCGTCC-----CCCTGCCATATATTCTTCCAAAAAGATAAACAGAATAATACA--TTTACCTGTT----GACATACATATCCATGTACTAT---ATAAAAAAAAAAGT--T-AAAT--AAAA-CTTGA----TCTGAGCATATTTAAGGAAAATATACACTAAAATGTAAAATTTACATGTAACGTCCGTCCCCGTAACGT-CCG-----------TCCCCCT-
gi|24 : a---AAA-AA----A--------------CT-------G---------TAACGTCCGTCC-----CCCCGCCATATATTCTTCCAAAAAGATAAACAGAATAAT--ACATTCACCTGCT----GACATACATATCCATGTACTATCCAAAAAAA-------AGTT-AAAT--AAAACTT-GG----TCTGAGCATATTTAAGGATAATATACACTAAAATG------------a
gi|25 : acaTATTAACGAGAAATT-TG-ATATATTTATTATATAG---T-TAAACCATATACTACGGACACAAATCACACAAAATAATAAAC------AT----A-CAATTTTGAT---TTTATCATA------TTTACAACATTTACGTGTATCACATTGTAATGCATGACCACGAGGAGATATATTTG----CTTTAATAAAAGTGTATTTGTGAAATAATACATAAATTCAGtnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn
gi|26 : TATTAACAAGAAATT-TG-ATATATTTATTATAAAT---T-TACACCATATACTACGGACACAAATCACACAAAATAATATAC------AT----A-CAATTTTGAT---TTTATCATA------TTTACAACATTTACGTGTATTTCATTGTAATGCATGACCACGA-GATATATATTTG----CTTTAACAATAGTGTATTTGTGAAAAAGTAAAT
gi|27 : GAAATTATACATGTATTTATTATAAATATATATACATCATATACAACACATACAC-CCACACAAAATAATATAT------AT----ATCAG---TGAA---TTTATCAAA------T
gi|3 : TATTAACGAGAAATT-TG-ATATATTTATTATAAAT---T-TACACCATATACTACGGACACAAATCACACAAAATAATATAC------AT----A-CATTTTTTAT---TTTATCATA------TTTACAACATTTACGTGTATCACATTGTAATGCATGACCACGAGGAGATATATTTG----CTTTAATAATAGTGTATTTGTAAAATAATACATAAACTCAGAAAATTTCTA-TTAGTGA-C---AAA-AA----AACTGTAACAT----CT-------G---------CA---------T-----CCCTGGTATATATTCTTCCAAGAAGATAAATAAAATGAT--ATATTCACCTGCT----GTTATAC----TGAGGTACTAT---ATAAAA-------TG-TAAAA---AAAA-AT-GG----TC-------ATTTTGGAAAGATATACAAGGAAATG------------G-AACGTCCGTCCCCGTAACAT-CCC---------CCT-CCCCT-CCCCCACCT-GCATATACATTCT
gi|4 : TATTAACGAGAAATT-TG-TTATATTTATTGTAAAT---T-TACACCATATAATACGGACACAAAACACACAAAATAATATAC------AT----A-CAATTTTGAT---TTGATCATA------TAAACAACATTTACGTGTACCACATTGTAATGCATGATCACGAGGAGATATATTTGCTTTCTTTAATAATAGTGTATTTGTGAAATGATACATAAACTCAGAAAACTTCAT-TTTGTGA-C---AAA-AA----A--------------CT-------G---------CA---------T-----CCCTAGTATATATTCTTCCAAGAAGATAAATAGAATGATACACATTCACCTGCT----GTTATAC----CCAAGTACTAT---ATAAAA-------TG-TAAAA---AAAA-AT-GA----TA-------ATTTTGGAAAGATATACACGGAAATG------------G-AACGTCCGTCCGCGTAACGT-CCG---------CCTCACCCTCCCCCCACCT-GCGTAAACATTC
gi|5 : TATTAACGAGAAATT-TG-ATATATTTATTGTAAAT---T-TACGCCATACACTAAGGACACAAATCACACAAAATAATATAC------AT----A-CAATTTTGAT---TTTATCATA------TTTATAACATTTACGTGTATCACATTGTAATGCATGACCACGAGGAGATATATTTGCTTTCTTTAATAAATGTGTATTTGTGAAATGATACATAAACTCAGAAAATTTCAA-TTTGTGA-C---AAA-AA----A--------------CT-------G---------CA---------T-----CCCTGGTATATATTCTTCCAAGAAGATAAATAGAATGATACACATTCACCTGTT----GTTATAT----CGATGTACTAT---ATAAAA-------TG-T-AAA---AAAA-TT-GG----TC-------ATTTTGGAAAGATATACACGGAAATG------------G-AACGTCCGTCCCCGTAACGT-CCG---------CCTCCCCCT-CCCCCACCT-GCATAAACATTTTc
gi|6 : TATTAGCGAGAAATT-TG-GTATATTCATTGTAAAT---T-TACACCATATACTACGGACAAAAATCACACAAAATAATATAC------AT----A-CAATTTTGAT---TATATCATA------TTTACAACATTTACGTGTATCACATTGTAATGCATGACCACGAGGAGATATATTTGCTTTCTTTAATAAAAGTGTATTTGTGAAATGATACATAAACTCAGAAAATTTCAATTTTGTGA-C---AAA-AA----A--------------CT-------G---------CA---------C-----CCCTGGTATATATTCTTCCAAGAAGATAAATAGAATGATACACATTCAGCTGCT----GTTATAC----CGAGGTACTAT---ATAAAA-------TG-T--AA---AACA-TT-GG----TC-------ACTTTGGAAAGATATACACGGAAATG------------G-AACGTCCGTCCCCGTAGCGT-CCG---------CCTCCCCCT-TCCCCACCT-GTATAAACATTCT
gi|7 : ATTAACAAGAAATT-TG-GTATATTTATTGTAAAT---T-TACACCATATACTATGGACAAAAATCACACAAAATAATATAC------AT----A-CAATTTTGAT---TTTATCATA------TTTACAACATTTATGTATATCACATTGTAATGCATGACCACGAAGAGATATATTTGCTTTCTTTAATAAAAGTGTATTTGTGAAATGATACATAAACTCAGAAAATTTCAA-TTTGTGA-C---AAA-AA----A--------------CT-------G---------CA---------T-----CCCTGGTATATATTCTTCCAAGAAGATAAATAGAATGATACACATTCACCTGCT----GTCATAC----CAAGGTACTAT---ATAAAA-------TG-T--AA---AAAA-TT-GG----TC-------ATTTTGGAAAGATATACACGGAAATG------------G-TATGTCC-TCCCCGTAACGT-CTG---------CCTCCCCCT-CCCCCACCT-GCATAAACATTCT
gi|8 : cTATTAACGAGAAATT-TG-ATATATTTATTGTAAAT---T-TACACCATATACTACAGACACAAATCACACAAAATAATATAC------AT----A-CAATTTTGAT---TTTATCATA------TTTATAACATTTACGTGTATCACATTGTAATGCATGACCACGAGGAGATATATTTGCTTTCTTTAATAAAAGTGTATTTGTGAAATGATACATAAACTCAGAAAATTTCAA-TTTGTGA-C---AAA-AA----A--------------CT-------G---------CA---------T-----CCCTGGTATATATTCTTCCAAGAAGATAAATAGAATGATACACATTCACCTGTT----GTTTTAC----CAAGGTGCTAT---ATAAAA-------TG-TAAAA---AAAA-TT-GG----TC-------ATTTTGGAAAGATATACACGGAAATG------------G-AACGTCCGTCCCCGTAACGT-CCG-------------CCCCT-CCCCCACCT-GCATACACATTCT
gi|9 : TATTAACGAGAAATT-TG-TTATATTTATTGTAAAT---T-TACCCAATATACTACGGACACATATCACACAAAATAATATAC------ATGTATA-CAATTTTGAT---TTTATCATA------TTTACAACATTTACGTGTATCACATTGTAATGCATGACCACGAGGAGATATATTTGCTTTCTTTAATAAAAGTGTATTTGTGAAATGATACATAAACTCAGAAAATTTCAA-TTTGTGA-C---AAA-AA----A--------------CT-------A---------CA---------T-----CCCTGGTATATATTCTTCCAAGAAGATGAATAGAA-GGT--------ACCTGCT----GTTATAC----CGAGGTACTAG---GTAAAA-------TG-T-AAA---AAAA-TT-GG----TC-------ATTTTGGAAAGATATGCACGGAAACG------------G-AACGCCCGTCCCCGTAACAT-CCG---------CCTCTCCCT-CCCCCATCT-GCATAAACATTCT
Alignments
lowQualScore : 55555555555555555555555555555555555555555555 1111111
lowQualScore : 2 2 0 333 1 555555 3333 1 222 777777 7 4 4 1 1 333 1 3333 66666666666666666666666666666666666666666666 44444 3333 8888 333 6666666 1 9 999 9999 4444 2222222 999999999999 2 2 888888888 2 2 1
lowQualScore : . . . ... . ...... .... . ... ...... . . . . . ... . .... ............................................ ..... .... .... ... ....... . . ... .... .... ....... ............ . . ......... . . .
lowQualScore : 0 0 8 000 7 000000 7777 7 999 111111 0 8 4 9 9 000 7 7777 11111111111111111111111111111111111111111111 55555 9999 1111 333 2222222 9 5 888 9999 0000 4444444 888888888888 0 0 000000000 0 1 4
consensus : TATTAACGAGAAATT-TG-ATATATTTATTGTAAAT---T-TACACCATATACTACGGACACAAATCACACAAAATAATATAC------AT----A-CAATTTTGAT---TTTATCATA------TTTACAACATTTACGTGTATCACATTGTAATGCATGACCACGAGGAGATATATTTGCTTTCTTTAATAATAGTGTATTTGTGAAATAATACATAAACTCAGAAAATTTCAA-TTTGTGA-C---AAA-AA----A--------------CT-------G---------CA---------T-----CCCTGGTATATATTCTTCCAAGAAGATAAATAGAATGATACACATTCACCTGCT----GTTATAC----CGAGGTACTAT---ATAAAA-------TG-T-AAA---AAAA-NT-GG----TC-------ATTTTGGAAAGATATACACGGAAATG------------G-AACGTCCGTCCCCGTAACGT-CCG---------CCTCCCCCT-CCCCCACCT-GCATATACATTCT
Reference ( family-411 ) : TATTAACGAGAAATT-TG-ATATATTTATTGTAAAT---T-TACACCATATACTACGGACACAAATCACACAAAATAATATAC------AT----A-CAATTTTGAT---TTTATCATA------TTTACAACATTTACGTGTATCACATTGTAATGCATGACCACGAGGAGATATATTTGCTTTCTTTAATAATAGTGTATTTGTGAAATAATACATAAACTCAGAAAATTTCAA-TTTGTGA-C---AAA-AA----A--------------CT-------G---------CA---------T-----CCCTGGTATATATTCTTCCAAGAAGATAAATAGAATGATACACATTCACCTGCT----GTTATAC----CGAGGTACTAT---ATAAAA-------TG-T-AAA---AAAA-NT-GG----TC-------ATTTTGGAAAGATATACACGGAAATG------------G-AACGTCCGTCCCCGTAACGT-CCG---------CCTCCCCCT-CCCCCACCT-GCATATACATTCT
gi|1 : TAATGAGAAATT-TG-TTATATTTATTTTAAAT---T-TACACTATATACTAC--ACACAAATCACACAAAATAATATACCTGTACAT----A-CAATTTTGAT---TTTATCATA------TTTACAACATTTACATGTATCACATTGAAATGCATGAC-ATGAGGAGATATATTTGCTTT----AATAATAGTGTATTTGTGAAATAATACATAAAATCAGAATATTTCAA-TTTGTGA-A---AAACAA----A--------------CTAACGTCTG---------CA---------T-----TCCTGGCTTATATTCATCCAAGAAGATAAATATAATGATACA--TTCACCTGCTTGCTGTTATAC----CGAGGTACTAT---ATAAAA-------TG-T-AAATA-AAAA-GT-GG----TC-------TTTTTGGAAAGATATACAAGGAAATG------------G-AACGTCCATCCCCATAGCGT-CTG---------CCTCCCCAT-CCCCCACCT-GTATCTACATTCT
gi|10 : TATTAACGAGAAATT-TG-TTATATTTATTGTAAAT---T-TACACCATA-----CGGACACAAATCACACAGACTATTATAC------AT----A-CAATTTTGAT---TT-ATCATA------TTTACAACATTTACGTGTATCACATTGTAATGCATGACCACGACGAGATATATTTGCTTTCTTTTATAATAGTGTATTTGTGAAATGATACATAAACTCAGAAAATTTCAA-TTTGTGA-C----AA-AA----A--------------CT-------G---------CA---------T-----CCCTGTTATATATTCTTCCAATAAGATATATAGAACGACTCACATTCACCTGCT----GTTATAC----CGAGGTACTAT---ATAAAA-------TG-T-AAA---AAAA-GGAGA----TC-------GTTTTGGAAAGATATACACGGAAATG------------G-AACGTCCGTCCTCATAACGT-CCG---------CCTCCCCCT-CCCCCACCT-GCATAAACTTTCT
gi|11 : TATTAACGAGAAATT-TG-ATATATT----ATAAAT---T-TACACCATATACTACGGACACAAATCACACAAAATAATATAC------AT----A-CAATTTTGAT---TTTATCATA------TTTACAACATTAACGTGTATCACATTGTAATGCATGACCACGAGGAGATATATTTGCTTT----AATAATAGTGTATTTGTGAAATAATACATAAA--------ATTTCAA-TTTGTGA-C---AAA-AA----AAACTGTAACGT---CT-------G---------CA---------T-----CCCTGGTATATATTCTTCCAAGAAGATAAATAGAATGTTACACATTCACCTGCT----GTAATAC----CGAGGAACTAT---ATAAAA-------TG-T-AAA---AAAA-AT-GG----TC-------ATTTTGGAAAGATATACACGGAAATG------------G-AACGTCCGTCCCCGTAACGT-CCG---------CCT-CCCCT-CCCCCACCT-GCATATACATTCT
gi|12 : TATTAACGAGAAATT-TG-ATATATTTATTATATAT---T-CACACCATATACTACGGACACAAATCACACAAAATAATATAC------AT----A-CAATTTTGAG---TTTATCATA------TTTACAACATTTACGTGTATGATATTGTAATGCATGACCACGAGGAGATATATTTG----CTTTAATAATAGTGTATTTGTGAAATAATACATAAAATCAGAAAATTTCAA-TGTGTGA-C---AAA-AACTGTAACGT----------CT-------G---------CA---------T-----CCCTGGTATATGTTCTTCCAAGAAGATAAATAGAATGATACACATTCACCTGCT----GTTATAC----CGTGGTTCTAT---ATAAAA-------TG-TAAAA---AAAA-AA-GG----TC-------ATTTTGGAAAGATATACACGGAAATG------------G----------------AACGT-CCG---------CCTCTCCCT-CCCCCACCTCCCCCATACATTCT
gi|13 : TATTAACGAGAAATT-TG-ATATATTTATTATAAAT---T-TACACCATATACTACGGACACA-----CACAA--TAATATAC------AT----A-CAATTTTGAT---TTTATCATA------TTTACAACATTTACGTGAATCACAATGTAATGCATGACCACGAGGAAATATATATG----CTTTAATAATAGTGTATTTGTGAAATAATACATAAA-TCAGAAAATTTCAA-TTTGTGA-C---AAA-AA----AACTTTAACGT----CT-------G---------CA---------T-----CCCTGCTATATATTCTTCCAAGAAGATCAATATAATGTTACACATTCACCTGCT----GTTATAC----CGAGGTACTAT---ATAAAA-------TG-T-AAA---AA---------------------ATTTTGGAAAGATATACACGGAAATG------------G-AACGTCCGTCCCCGTAACGT-CCG---------CCTCCCCCT-CCCCCATCT-GCATATAC
gi|14 : ATTAACCAGAAATT-TG-ATATATTTATTGTAAAT---T-TACACCATATACTACGGACACAAATCACACAAAATGATATAC------A-------------------------------------TACAA--------TGTATCACATTGTAATGCATGACCACGAGGAGATATATTTGCTTTCTTTAATAAAAGTGTATTTGTGAAATGATACATAAACTCAGAAAATTTCAA-TTTGTGA-C---AAA-AA----A--------------CT-------G---------CA---------T-----CCCTGGTATATATTCTTCCAAGAAGATCAATAGAATGATACACATTCACCTGCT----GTTATAC----CGAGGTACTAT---ATAAAA-------TG-TAAAA---AAAA-TT-GG----TC-------ATTTTGGAAAGATATACACAGAAATG------------G-AACGTCCGTCCCCGTAACGTCCCGTAACGTCCTCCTCCCCCT-ACCCCACCT-GCATAAACATTCT
gi|15 : TAAAT---T-TACACCATATACTACGGACAAAAATCACACAAAATAATATAC------AT----A-CAATTTTGAT---TTTATCATA------TTTACAACATTTACGTGTATCATATTGTAATACGTGACCACGAGGAGATATATTTG----CTTTAATAATAGTGTATTTGTGAAATAATACATAAACTCAGAAAATTTTAA-TGTGTGA-C---AAA-AA----A--------------CT-------G---------TAACGCCTCTTT-----CCCTGGTATATATTCTTCCAAGAAG-TAAATAGAATGATACACATTCACCTGCT----GTTATAC----CGAGGTACTAT---ATAAAA-------TT-T-AAAAACAAAA-AA-GG----TC-------ATTTTGGAAAGATATACACGGAAATG------------G-AACGTCCGTCCACGTAACGT-TCC---------CCTCCCCCT-CCCCTACCT-GTATATACATTC
gi|16 : ATATTTATCATAAAT---T-TACACCATATACTACGGACACAAATCACACAAAATGATATAC------AT----A-CAATTTTGAT---TTGATCATA------TTT---ACA------------ACATT-TAA----------------GATATATTTG-----TTTAATAATAGTGTATTTGTGAAATAATACATAAAATCAGAACATTTCAA-TTTGTGA-C---AAA-AA----AACTGTAATGT----CT-------G---------TA---------T-----CCCTGGTATATATTCTTTCAAGCAGATAAATAGAATGATACACATTCACCTGCT----GTTATAT----CGAGGTACTAT---ATAAAA-------TG-T-AAA---AGAA--------------------------AAAGATATACACGGAGATG------------G-AACGTCCGTCCACGTAACGT-CCG---------CCTCCCCCT-CCCCCACCT-GCATATACATTCT
gi|17 : TTTGATATATTTATTATAAA----TTTATACCAT------GTATCACATTGTAACGCATGACCACGAGGAGATATATTTGCTTT----AATAATAGTGTATTTGTGAAATAATACATAAAATCAGAAAAATTCAA-TTTGTGA-C---AAA-AA----A--------------CT-------GTAACGTCTGCA---------T-----CCCTGGTATATATTTTTCCAAGAAGATAAATAGAATGATACACATTCACCTGCT----GTTATAC----CGAGGTACTAT---ATGAAA-------TG-T-AAA---AAAA--T-GG----TC-------ATTTTGGAAAGATATCCACGGAAATG------------G-AACGTCCGTCCCCGTAACGT-CCG---------CCTCCCCTT-CTCCCACCT-GCATATACATTCTa
gi|18 : aaTAAAT---T-TACACTATATACCACGGACACAAATCACACAAAATGATATAC------CT----A-CAATT--------------ATA------TTGA-----TTT-----TATCATATTA---------ACCGCGAGGAGATATATTTGTTTT----AATAATAGTGTATTTGTGAAATAATACACAAACTCAGAAAATTTCAA-TTTGTGA-C---AAA-AA----
gi|18 : GACAAA---AATGATACACATTCACCTGCT----GTTATAC----CGAGGTACTAT---ATAAAA-------TG-T-AAA---AAAA-AA-GAGAGATC-------ATTTTGGAAAGATATACACGGAAATA------------G-AAAGTCCGTCCCCGTAACGT-CCG---------CCTCCCCCT-CCCCCACCT-GCATATACATTTTtgatacacattcacctgctgttataccgaggtactatataaaatgtaaaaaaaaagagagatcattttggaaagatatacacggaaatagaaagtccgtccccgtaacgtccgcctccccctcccccacctgcatatacatttt
gi|19 : taaatttacactatataccacggacacaaatcacacaaaatgatatacctacaattatattgattttatcatattaaccgcgaggagatatatttgttttaataatagtgtatttgtgaaataatacacaaactcagaaaatttcaatttgtTATTAACGAGAAATT-TG-ATATATTGATTATAA-T---T-TACACCATATACTATGGACACAAATCACACAAAATAATA------------------AATTTTGAT---TTGATCATACATGTATTTACAACAGTTACGTGTATCACATTGTAATGCATGACCACGAGGGGATATATTTGCTTT----AATAATAGTGTATTTGTGAAATAATACATAAAATCAGAAAATTTCAA-TTTGTGACC---AAA-AA----A--------------CT-------GCAA------CA---------TCTGAACCCTGGTATATATTCTTCCAAGAAGATAAATAGAATGATACACATTCTCCTGCT----GTTGTA
gi|2 : TATTAAAGAGAAATT-GG-ATATATTCATTATAAAT---T-TATACCATTTACTACGGACAAATATCACACAAAATAATATAC------AT----A-CAATTTTGAT---TTTATCATA------TTTACAACATGTTCGTGTATCACATTGTAATGCATGACTCCGAGGAGATATATTTGCTTT----AATTATAGTTTATTTGTGAAATAATACATAAAATAAGAAAATTTTAA-TTTGTGA-C---AAA-AA----AACTGTAACGT----CT-------G---------CA---------T-----CCCTGGTATATATTCTTCCAAGAAGATAAATAGAATGATATACATTCACCTGCT----GTTATAC----CGAGGTACTAT---ATAAAA-------TG-T-AAA---AAAA-AT-GG----TT-------ATTTTGGAAAGATATACACGGAAATG------------G-AACGTCCGTCCTCGTGACGT-TCG---------CCTCCCACT-CCCCTACTT-GCATATACATTC
gi|20 : ATTAACGAGACATT-AG-CTATATTTATTATAAAT---T-TACATCATACACTACGCACACAAATCACACAAAGTAATATAC------AT----A-TGTTTTTGAT---TTTATCATA------TTTACAACATTTACATGTATTGCATTGTAATGCATGA-CATGAGGAGATAGATT--CTTT
gi|21 : TATTAACGATACATT-TG-ATATATCTATTTTAGAT---T-TACAACATATACTACGGACACAAATCACACAAAATAATATAC------AT----A-CAATTTTGAT---TTTATCATA------TTTACAACATTTACGTGTATCACATTGTAATGCATGACCACGAGGAGATATAT----TTTCATTAATA-------ATTTGTGAAATAATACATAAAATCAGAAAATTTCAT-TTTGTGA-C---AAA-AA----ATTTTTTTATAACGTCT-------G---------CA---------T-----CCCTGGTATATATTCTTCCAAGAaaaatgctgctaaacaccatacaacaacaatgatatctgcttaactaaaaaaaacaacaaattttgatacatactggttatatacacttttgaaataataattgtagagtatatacc
gi|22 : ATATTAGTGTATTTGTGAAATAATACATAAAATCAGAAAATTTCAA-TTTGTGA-CCAAAAA-AA----A--------------CT-------GTAACGTATGCA---------T-----CCCTGGTATATATTCTTCCAAGAAGATAAATAGAATGATACACATTCTCCTGCT----GTTATAC----CGAGGTACTAT---ATAAAA-------TG-T-AAA---AAA---T-GG----TC-------ATTTTGGAAAGATACACACGGAAATG------------G-AACGTCCGTCCCCGTAACGT-CCA---------CCTCCCCCT-CCCCCACCT-GCATATACATTCT
gi|23 : ---AAA-AA----A--------------CT-------G---------TAACGTCCGTCC-----CCCTGCCATATATTCTTCCAAAAAGATAAACAGAATAATACA--TTTACCTGTT----GACATACATATCCATGTACTAT---ATAAAAAAAAAAGT--T-AAAT--AAAA-CTTGA----TCTGAGCATATTTAAGGAAAATATACACTAAAATGTAAAATTTACATGTAACGTCCGTCCCCGTAACGT-CCG-----------TCCCCCT-
gi|24 : a---AAA-AA----A--------------CT-------G---------TAACGTCCGTCC-----CCCCGCCATATATTCTTCCAAAAAGATAAACAGAATAAT--ACATTCACCTGCT----GACATACATATCCATGTACTATCCAAAAAAA-------AGTT-AAAT--AAAACTT-GG----TCTGAGCATATTTAAGGATAATATACACTAAAATG------------a
gi|25 : acaTATTAACGAGAAATT-TG-ATATATTTATTATATAG---T-TAAACCATATACTACGGACACAAATCACACAAAATAATAAAC------AT----A-CAATTTTGAT---TTTATCATA------TTTACAACATTTACGTGTATCACATTGTAATGCATGACCACGAGGAGATATATTTG----CTTTAATAAAAGTGTATTTGTGAAATAATACATAAATTCAGtnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn
gi|26 : TATTAACAAGAAATT-TG-ATATATTTATTATAAAT---T-TACACCATATACTACGGACACAAATCACACAAAATAATATAC------AT----A-CAATTTTGAT---TTTATCATA------TTTACAACATTTACGTGTATTTCATTGTAATGCATGACCACGA-GATATATATTTG----CTTTAACAATAGTGTATTTGTGAAAAAGTAAAT
gi|27 : GAAATTATACATGTATTTATTATAAATATATATACATCATATACAACACATACAC-CCACACAAAATAATATAT------AT----ATCAG---TGAA---TTTATCAAA------T
gi|3 : TATTAACGAGAAATT-TG-ATATATTTATTATAAAT---T-TACACCATATACTACGGACACAAATCACACAAAATAATATAC------AT----A-CATTTTTTAT---TTTATCATA------TTTACAACATTTACGTGTATCACATTGTAATGCATGACCACGAGGAGATATATTTG----CTTTAATAATAGTGTATTTGTAAAATAATACATAAACTCAGAAAATTTCTA-TTAGTGA-C---AAA-AA----AACTGTAACAT----CT-------G---------CA---------T-----CCCTGGTATATATTCTTCCAAGAAGATAAATAAAATGAT--ATATTCACCTGCT----GTTATAC----TGAGGTACTAT---ATAAAA-------TG-TAAAA---AAAA-AT-GG----TC-------ATTTTGGAAAGATATACAAGGAAATG------------G-AACGTCCGTCCCCGTAACAT-CCC---------CCT-CCCCT-CCCCCACCT-GCATATACATTCT
gi|4 : TATTAACGAGAAATT-TG-TTATATTTATTGTAAAT---T-TACACCATATAATACGGACACAAAACACACAAAATAATATAC------AT----A-CAATTTTGAT---TTGATCATA------TAAACAACATTTACGTGTACCACATTGTAATGCATGATCACGAGGAGATATATTTGCTTTCTTTAATAATAGTGTATTTGTGAAATGATACATAAACTCAGAAAACTTCAT-TTTGTGA-C---AAA-AA----A--------------CT-------G---------CA---------T-----CCCTAGTATATATTCTTCCAAGAAGATAAATAGAATGATACACATTCACCTGCT----GTTATAC----CCAAGTACTAT---ATAAAA-------TG-TAAAA---AAAA-AT-GA----TA-------ATTTTGGAAAGATATACACGGAAATG------------G-AACGTCCGTCCGCGTAACGT-CCG---------CCTCACCCTCCCCCCACCT-GCGTAAACATTC
gi|5 : TATTAACGAGAAATT-TG-ATATATTTATTGTAAAT---T-TACGCCATACACTAAGGACACAAATCACACAAAATAATATAC------AT----A-CAATTTTGAT---TTTATCATA------TTTATAACATTTACGTGTATCACATTGTAATGCATGACCACGAGGAGATATATTTGCTTTCTTTAATAAATGTGTATTTGTGAAATGATACATAAACTCAGAAAATTTCAA-TTTGTGA-C---AAA-AA----A--------------CT-------G---------CA---------T-----CCCTGGTATATATTCTTCCAAGAAGATAAATAGAATGATACACATTCACCTGTT----GTTATAT----CGATGTACTAT---ATAAAA-------TG-T-AAA---AAAA-TT-GG----TC-------ATTTTGGAAAGATATACACGGAAATG------------G-AACGTCCGTCCCCGTAACGT-CCG---------CCTCCCCCT-CCCCCACCT-GCATAAACATTTTc
gi|6 : TATTAGCGAGAAATT-TG-GTATATTCATTGTAAAT---T-TACACCATATACTACGGACAAAAATCACACAAAATAATATAC------AT----A-CAATTTTGAT---TATATCATA------TTTACAACATTTACGTGTATCACATTGTAATGCATGACCACGAGGAGATATATTTGCTTTCTTTAATAAAAGTGTATTTGTGAAATGATACATAAACTCAGAAAATTTCAATTTTGTGA-C---AAA-AA----A--------------CT-------G---------CA---------C-----CCCTGGTATATATTCTTCCAAGAAGATAAATAGAATGATACACATTCAGCTGCT----GTTATAC----CGAGGTACTAT---ATAAAA-------TG-T--AA---AACA-TT-GG----TC-------ACTTTGGAAAGATATACACGGAAATG------------G-AACGTCCGTCCCCGTAGCGT-CCG---------CCTCCCCCT-TCCCCACCT-GTATAAACATTCT
gi|7 : ATTAACAAGAAATT-TG-GTATATTTATTGTAAAT---T-TACACCATATACTATGGACAAAAATCACACAAAATAATATAC------AT----A-CAATTTTGAT---TTTATCATA------TTTACAACATTTATGTATATCACATTGTAATGCATGACCACGAAGAGATATATTTGCTTTCTTTAATAAAAGTGTATTTGTGAAATGATACATAAACTCAGAAAATTTCAA-TTTGTGA-C---AAA-AA----A--------------CT-------G---------CA---------T-----CCCTGGTATATATTCTTCCAAGAAGATAAATAGAATGATACACATTCACCTGCT----GTCATAC----CAAGGTACTAT---ATAAAA-------TG-T--AA---AAAA-TT-GG----TC-------ATTTTGGAAAGATATACACGGAAATG------------G-TATGTCC-TCCCCGTAACGT-CTG---------CCTCCCCCT-CCCCCACCT-GCATAAACATTCT
gi|8 : cTATTAACGAGAAATT-TG-ATATATTTATTGTAAAT---T-TACACCATATACTACAGACACAAATCACACAAAATAATATAC------AT----A-CAATTTTGAT---TTTATCATA------TTTATAACATTTACGTGTATCACATTGTAATGCATGACCACGAGGAGATATATTTGCTTTCTTTAATAAAAGTGTATTTGTGAAATGATACATAAACTCAGAAAATTTCAA-TTTGTGA-C---AAA-AA----A--------------CT-------G---------CA---------T-----CCCTGGTATATATTCTTCCAAGAAGATAAATAGAATGATACACATTCACCTGTT----GTTTTAC----CAAGGTGCTAT---ATAAAA-------TG-TAAAA---AAAA-TT-GG----TC-------ATTTTGGAAAGATATACACGGAAATG------------G-AACGTCCGTCCCCGTAACGT-CCG-------------CCCCT-CCCCCACCT-GCATACACATTCT
gi|9 : TATTAACGAGAAATT-TG-TTATATTTATTGTAAAT---T-TACCCAATATACTACGGACACATATCACACAAAATAATATAC------ATGTATA-CAATTTTGAT---TTTATCATA------TTTACAACATTTACGTGTATCACATTGTAATGCATGACCACGAGGAGATATATTTGCTTTCTTTAATAAAAGTGTATTTGTGAAATGATACATAAACTCAGAAAATTTCAA-TTTGTGA-C---AAA-AA----A--------------CT-------A---------CA---------T-----CCCTGGTATATATTCTTCCAAGAAGATGAATAGAA-GGT--------ACCTGCT----GTTATAC----CGAGGTACTAG---GTAAAA-------TG-T-AAA---AAAA-TT-GG----TC-------ATTTTGGAAAGATATGCACGGAAACG------------G-AACGCCCGTCCCCGTAACAT-CCG---------CCTCTCCCT-CCCCCATCT-GCATAAACATTCT
blockSeqs : A C ATA A . GTAT T ATA CATGTA C C C T C CAA . CTGT TTTTTTTATAACGTCTGCA CTGAA . ATAT CCA AAAAAAG T A AAC GGA GAGA TGAGCAT TAAAATTTACAT T C TAACGTCCT C C A
blockSeqs : . . . . . . . . AA C C A . . . . . AACTGTAACGTCTGCA . . ATAT . . . A T CTT . TGAGCAT . . . . . . T
blockSeqs : . . . . . . . . . C C C . . . . . ACTTTAACGTCTGCA . . . . . . A T CTT . . . . . . . . T
blockSeqs : . . . . . . . . . C C C . . . . . ACTGTAATGTCTGTA . . . . . . A . AT . . . . . . . . T
blockSeqs : . . . . . . . . . T C A . . . . . ACTGTAACGTCTGCA . . . . . . A . AA . . . . . . . . A
blockSeqs : . . . . . . . . . C C A . . . . . ACTGTAACATCTGCA . . . . . . . . TT . . . . . . . . T
blockSeqs : . . . . . . . . . C C C . . . . . CTGTAACGCCTCTT . . . . . . . . AA . . . . . . . . T
blockSeqs : . . . . . . . . . C C A . . . . . CTGTAACGTCTGCA . . . . . . . . AA . . . . . . . . T
blockSeqs : . . . . . . . . . C C A . . . . . CTGTAACGTATGCA . . . . . . . . AT . . . . . . . . T
blockSeqs : . . . . . . . . . C C A . . . . . CTGTAACGTCCGTC . . . . . . . . AT . . . . . . . . T
blockSeqs : . . . . . . . . . C C A . . . . . CTGTAACGTCCGTC . . . . . . . . AT . . . . . . . . T
blockSeqs : . . . . . . . . . C C T . . . . . ACGTCTGCA . . . . . . . . TT . . . . . . . . T
blockSeqs : . . . . . . . . . C C C . . . . . CTGCAACA . . . . . . . . TT . . . . . . . . A
blockSeqs : . . . . . . . . . C C C . . . . . CTGCA . . . . . . . . TT . . . . . . . . A
blockSeqs : . . . . . . . . . . C C . . . . . CTGCA . . . . . . . . TT . . . . . . . . A
blockSeqs : . . . . . . . . . . . C . . . . . CTGCA . . . . . . . . TT . . . . . . . . A
blockSeqs : . . . . . . . . . . . C . . . . . CTGCA . . . . . . . . T . . . . . . . . C
blockSeqs : . . . . . . . . . . . C . . . . . CTGCA . . . . . . . . T . . . . . . . . A
blockSeqs : . . . . . . . . . . . C . . . . . CTGCA . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . CTGCA . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . CTACA . .
blockSeqs : . . . . . . . . . . .
blockSeqs : . .
blockSeqCons : ****** CTGTAACGTCTGCA****************************** **** ***
originalCons : TATTAACGAGAAATT-TG-ATATATTTATTGTAAAT---T-TACACCATATACTACGGACACAAATCACACAAAATAATATAC------AT----A-CAATTTTGAT---TTTATCATA------TTTACAACATTTACGTGTATCACATTGTAATGCATGACCACGAGGAGATATATTTGCTTTCTTTAATAATAGTGTATTTGTGAAATAATACATAAACTCAGAAAATTTCAA-TTTGTGA-C---AAA-AA----A--------------CT-------G---------CA---------T-----CCCTGGTATATATTCTTCCAAGAAGATAAATAGAATGATACACATTCACCTGCT----GTTATAC----CGAGGTACTAT---ATAAAA-------TG-T-AAA---AAAA-NT-GG----TC-------ATTTTGGAAAGATATACACGGAAATG------------G-AACGTCCGTCCCCGTAACGT-CCG---------CCTCCCCCT-CCCCCACCT-GCATATACATTCT
finalCons : TATTAACGAGAAATT-TG-ATATATTTATTGTAAAT---T-TACACCATATACTACGGACACAAATCACACAAAATAATATAC------AT----A-CAATTTTGAT---TTTATCATA------TTTACAACATTTACGTGTATCACATTGTAATGCATGACCACGAGGAGATATATTTGCTTTCTTTAATAATAGTGTATTTGTGAAATAATACATAAACTCAGAAAATTTCAA-TTTGTGA-C---AAA-AA----ACTGTAACGTCTGCA------------------------------T-----CCCTGGTATATATTCTTCCAAGAAGATAAATAGAATGATACACATTCACCTGCT----GTTATAC----CGAGGTACTAT---ATAAAA-------TG-T-AAA---AAAA-NT-GG----TC-------ATTTTGGAAAGATATACACGGAAATG------------G-AACGTCCGTCCCCGTAACGT-CCG---------CCTCCCCCT-CCCCCACCT-GCATATACATTCT
Alignments
lowQualScore : 11111111111111 1111111
lowQualScore : 2 2 0 333 1 555555 3333 1 222 777777 4 7 4 1 1 666 1 55 77777777777777 3333 8888 333 6666666 1 9 999 9999 4444 2222222 999999999999 2 2 888888888 2 2 1
lowQualScore : . . . ... . ...... .... . ... ...... . . . . . ... . .. .............. .... .... ... ....... . . ... .... .... ....... ............ . . ......... . . .
lowQualScore : 0 0 8 000 7 000000 7777 7 999 111111 8 0 4 9 9 555 7 99 00000000000000 9999 1111 333 2222222 9 5 888 9999 0000 4444444 888888888888 0 0 000000000 0 1 4
consensus : TATTAACGAGAAATT-TG-ATATATTTATTGTAAAT---T-TACACCATATACTACGGACACAAATCACACAAAATAATATAC------AT----A-CAATTTTGAT---TTTATCATA------TTTACAACATTTACGTGTATCACATTGTAATGCATGACCACGAGGAGATATATTTGCTTTCTTTAATAATAGTGTATTTGTGAAATAATACATAAACTCAGAAAATTTCAA-TTTGTGA-C---AAA-A--AA-----CTGTAACGTCTGCATCCCTGGTATATATTCTTCCAAGAAGATAAATAGAATGATACACATTCACCTGCT----GTTATAC----CGAGGTACTAT---ATAAAA-------TG-T-AAA---AAAA-NT-GG----TC-------ATTTTGGAAAGATATACACGGAAATG------------G-AACGTCCGTCCCCGTAACGT-CCG---------CCTCCCCCT-CCCCCACCT-GCATATACATTCT
Reference ( family-411 ) : TATTAACGAGAAATT-TG-ATATATTTATTGTAAAT---T-TACACCATATACTACGGACACAAATCACACAAAATAATATAC------AT----A-CAATTTTGAT---TTTATCATA------TTTACAACATTTACGTGTATCACATTGTAATGCATGACCACGAGGAGATATATTTGCTTTCTTTAATAATAGTGTATTTGTGAAATAATACATAAACTCAGAAAATTTCAA-TTTGTGA-C---AAA-A--AA-----CTGTAACGTCTGCATCCCTGGTATATATTCTTCCAAGAAGATAAATAGAATGATACACATTCACCTGCT----GTTATAC----CGAGGTACTAT---ATAAAA-------TG-T-AAA---AAAA-NT-GG----TC-------ATTTTGGAAAGATATACACGGAAATG------------G-AACGTCCGTCCCCGTAACGT-CCG---------CCTCCCCCT-CCCCCACCT-GCATATACATTCT
gi|1 : TAATGAGAAATT-TG-TTATATTTATTTTAAAT---T-TACACTATATACTAC--ACACAAATCACACAAAATAATATACCTGTACAT----A-CAATTTTGAT---TTTATCATA------TTTACAACATTTACATGTATCACATTGAAATGCATGAC-ATGAGGAGATATATTTGCTTT----AATAATAGTGTATTTGTGAAATAATACATAAAATCAGAATATTTCAA-TTTGTGA-A---AAACA--AA-----CT--AACGTCTGCATTCCTGGCTTATATTCATCCAAGAAGATAAATATAATGATACA--TTCACCTGCTTGCTGTTATAC----CGAGGTACTAT---ATAAAA-------TG-T-AAATA-AAAA-GT-GG----TC-------TTTTTGGAAAGATATACAAGGAAATG------------G-AACGTCCATCCCCATAGCGT-CTG---------CCTCCCCAT-CCCCCACCT-GTATCTACATTCT
gi|10 : TATTAACGAGAAATT-TG-TTATATTTATTGTAAAT---T-TACACCATA-----CGGACACAAATCACACAGACTATTATAC------AT----A-CAATTTTGAT---TT-ATCATA------TTTACAACATTTACGTGTATCACATTGTAATGCATGACCACGACGAGATATATTTGCTTTCTTTTATAATAGTGTATTTGTGAAATGATACATAAACTCAGAAAATTTCAA-TTTGTGA-C---AAA-A--A---------------CTGCATCCCTGTTATATATTCTTCCAATAAGATATATAGAACGACTCACATTCACCTGCT----GTTATAC----CGAGGTACTAT---ATAAAA-------TG-T-AAA---AAAA-GGAGA----TC-------GTTTTGGAAAGATATACACGGAAATG------------G-AACGTCCGTCCTCATAACGT-CCG---------CCTCCCCCT-CCCCCACCT-GCATAAACTTTCT
gi|11 : TATTAACGAGAAATT-TG-ATATATT----ATAAAT---T-TACACCATATACTACGGACACAAATCACACAAAATAATATAC------AT----A-CAATTTTGAT---TTTATCATA------TTTACAACATTAACGTGTATCACATTGTAATGCATGACCACGAGGAGATATATTTGCTTT----AATAATAGTGTATTTGTGAAATAATACATAAA--------ATTTCAA-TTTGTGA-C---AAA-AAAAA-----CTGTAACGTCTGCATCCCTGGTATATATTCTTCCAAGAAGATAAATAGAATGTTACACATTCACCTGCT----GTAATAC----CGAGGAACTAT---ATAAAA-------TG-T-AAA---AAAA-AT-GG----TC-------ATTTTGGAAAGATATACACGGAAATG------------G-AACGTCCGTCCCCGTAACGT-CCG---------CCT-CCCCT-CCCCCACCT-GCATATACATTCT
gi|12 : TATTAACGAGAAATT-TG-ATATATTTATTATATAT---T-CACACCATATACTACGGACACAAATCACACAAAATAATATAC------AT----A-CAATTTTGAG---TTTATCATA------TTTACAACATTTACGTGTATGATATTGTAATGCATGACCACGAGGAGATATATTTG----CTTTAATAATAGTGTATTTGTGAAATAATACATAAAATCAGAAAATTTCAA-TGTGTGA-C----AA-A--AA-----CTGTAACGTCTGCATCCCTGGTATATGTTCTTCCAAGAAGATAAATAGAATGATACACATTCACCTGCT----GTTATAC----CGTGGTTCTAT---ATAAAA-------TG-TAAAA---AAAA-AA-GG----TC-------ATTTTGGAAAGATATACACGGAAATG------------G----------------AACGT-CCG---------CCTCTCCCT-CCCCCACCTCCCCCATACATTCT
gi|13 : TATTAACGAGAAATT-TG-ATATATTTATTATAAAT---T-TACACCATATACTACGGACACA-----CACAA--TAATATAC------AT----A-CAATTTTGAT---TTTATCATA------TTTACAACATTTACGTGAATCACAATGTAATGCATGACCACGAGGAAATATATATGCTTT----AATAATAGTGTATTTGTGAAATAATACATAAA-TCAGAAAATTTCAA-TTTGTGA-CA--AAA-A--AA-----CTTTAACGTCTGCATCCCTGCTATATATTCTTCCAAGAAGATCAATATAATGTTACACATTCACCTGCT----GTTATAC----CGAGGTACTAT---ATAAAA-------TG-T-AAA---AA---------------------ATTTTGGAAAGATATACACGGAAATG------------G-AACGTCCGTCCCCGTAACGT-CCG---------CCTCCCCCT-CCCCCATCT-GCATATAC
gi|14 : ATTAACCAGAAATT-TG-ATATATTTATTGTAAAT---T-TACACCATATACTACGGACACAAATCACACAAAATGATATAC------A-------------------------------------TACAA--------TGTATCACATTGTAATGCATGACCACGAGGAGATATATTTGCTTTCTTTAATAAAAGTGTATTTGTGAAATGATACATAAACTCAGAAAATTTCAA-TTTGTGA-C---AAA-A--AA--------------CTGCATCCCTGGTATATATTCTTCCAAGAAGATCAATAGAATGATACACATTCACCTGCT----GTTATAC----CGAGGTACTAT---ATAAAA-------TG-TAAAA---AAAA-TT-GG----TC-------ATTTTGGAAAGATATACACAGAAATG------------G-AACGTCCGTCCCCGTAACGTCCCGTAACGTCCTCCTCCCCCT-ACCCCACCT-GCATAAACATTCT
gi|15 : TAAAT---T-TACACCATATACTACGGACAAAAATCACACAAAATAATATAC------AT----A-CAATTTTGAT---TTTATCATA------TTTACAACATTTACGTGTATCATATTGTAATACGTGACCACGAGGAGATATATTTG----CTTTAATAATAGTGTATTTGTGAAATAATACATAAACTCAGAAAATTTTAA-TGTGTGA-C---AAA-A--AA-----CTGTAACGCCTCTTTCCCTGGTATATATTCTTCCAAGAAG-TAAATAGAATGATACACATTCACCTGCT----GTTATAC----CGAGGTACTAT---ATAAAA-------TT-T-AAAAACAAAA-AA-GG----TC-------ATTTTGGAAAGATATACACGGAAATG------------G-AACGTCCGTCCACGTAACGT-TCC---------CCTCCCCCT-CCCCTACCT-GTATATACATTC
gi|16 : ATATTTATCATAAAT---T-TACACCATATACTACGGACACAAATCACACAAAATGATATAC------AT----A-CAATTTTGAT---TTGATCATA------TTT---ACA------------ACATT-TAA----------------GATATATTTG-----TTTAATAATAGTGTATTTGTGAAATAATACATAAAATCAGAACATTTCAA-TTTGTGA-C---AAA-AA-AA-----CTGTAATGTCTGTATCCCTGGTATATATTCTTTCAAGCAGATAAATAGAATGATACACATTCACCTGCT----GTTATAT----CGAGGTACTAT---ATAAAA-------TG-T-AAA---AGAA--------------------------AAAGATATACACGGAGATG------------G-AACGTCCGTCCACGTAACGT-CCG---------CCTCCCCCT-CCCCCACCT-GCATATACATTCT
gi|17 : TTTGATATATTTATTATAAA----TTTATACCAT------GTATCACATTGTAACGCATGACCACGAGGAGATATATTTGCTTT----AATAATAGTGTATTTGTGAAATAATACATAAAATCAGAAAAATTCAA-TTTGTGA-C---AAA-A--AA-----CTGTAACGTCTGCATCCCTGGTATATATTTTTCCAAGAAGATAAATAGAATGATACACATTCACCTGCT----GTTATAC----CGAGGTACTAT---ATGAAA-------TG-T-AAA---AAAA--T-GG----TC-------ATTTTGGAAAGATATCCACGGAAATG------------G-AACGTCCGTCCCCGTAACGT-CCG---------CCTCCCCTT-CTCCCACCT-GCATATACATTCTa
gi|18 : aaTAAAT---T-TACACTATATACCACGGACACAAATCACACAAAATGATATAC------CT----A-CAATT--------------ATA------TTGA-----TTT-----TATCATATTA---------ACCGCGAGGAGATATATTTGTTTT----AATAATAGTGTATTTGTGAAATAATACACAAACTCAGAAAATTTCAA-TTTGTGA-C---AAA-A--A
gi|18 : GACAAA---AATGATACACATTCACCTGCT----GTTATAC----CGAGGTACTAT---ATAAAA-------TG-T-AAA---AAAA-AA-GAGAGATC-------ATTTTGGAAAGATATACACGGAAATA------------G-AAAGTCCGTCCCCGTAACGT-CCG---------CCTCCCCCT-CCCCCACCT-GCATATACATTTTtgatacacattcacctgctgttataccgaggtactatataaaatgtaaaaaaaaagagagatcattttggaaagatatacacggaaatagaaagtccgtccccgtaacgtccgcctccccctcccccacctgcatatacatttt
gi|19 : taaatttacactatataccacggacacaaatcacacaaaatgatatacctacaattatattgattttatcatattaaccgcgaggagatatatttgttttaataatagtgtatttgtgaaataatacacaaactcagaaaatttcaatttgtTATTAACGAGAAATT-TG-ATATATTGATTATAA-T---T-TACACCATATACTATGGACACAAATCACACAAAATAATA------------------AATTTTGAT---TTGATCATACATGTATTTACAACAGTTACGTGTATCACATTGTAATGCATGACCACGAGGGGATATATTTGCTTT----AATAATAGTGTATTTGTGAAATAATACATAAAATCAGAAAATTTCAA-TTTGTGACC---AAA-A--AA-----CTGCAACATCTGAA-CCCTGGTATATATTCTTCCAAGAAGATAAATAGAATGATACACATTCTCCTGCT----GTTGTA
gi|2 : TATTAAAGAGAAATT-GG-ATATATTCATTATAAAT---T-TATACCATTTACTACGGACAAATATCACACAAAATAATATAC------AT----A-CAATTTTGAT---TTTATCATA------TTTACAACATGTTCGTGTATCACATTGTAATGCATGACTCCGAGGAGATATATTTGCTTT----AATTATAGTTTATTTGTGAAATAATACATAAAATAAGAAAATTTTAA-TTTGTGA-C---AAA-AA-AA-----CTGTAACGTCTGCATCCCTGGTATATATTCTTCCAAGAAGATAAATAGAATGATATACATTCACCTGCT----GTTATAC----CGAGGTACTAT---ATAAAA-------TG-T-AAA---AAAA-AT-GG----TT-------ATTTTGGAAAGATATACACGGAAATG------------G-AACGTCCGTCCTCGTGACGT-TCG---------CCTCCCACT-CCCCTACTT-GCATATACATTC
gi|20 : ATTAACGAGACATT-AG-CTATATTTATTATAAAT---T-TACATCATACACTACGCACACAAATCACACAAAGTAATATAC------AT----A-TGTTTTTGAT---TTTATCATA------TTTACAACATTTACATGTATTGCATTGTAATGCATGA-CATGAGGAGATAGATT--CTTT
gi|21 : TATTAACGATACATT-TG-ATATATCTATTTTAGAT---T-TACAACATATACTACGGACACAAATCACACAAAATAATATAC------AT----A-CAATTTTGAT---TTTATCATA------TTTACAACATTTACGTGTATCACATTGTAATGCATGACCACGAGGAGATATAT----TTTCATTAATA-------ATTTGTGAAATAATACATAAAATCAGAAAATTTCAT-TTTGTGA-C---AAA-A--AATTTTTTTATAACGTCTGCATCCCTGGTATATATTCTTCCAAGAaaaatgctgctaaacaccatacaacaacaatgatatctgcttaactaaaaaaaacaacaaattttgatacatactggttatatacacttttgaaataataattgtagagtatatacc
gi|22 : ATATTAGTGTATTTGTGAAATAATACATAAAATCAGAAAATTTCAA-TTTGTGA-CCAAAAA-A--AA-----CTGTAACGTATGCATCCCTGGTATATATTCTTCCAAGAAGATAAATAGAATGATACACATTCTCCTGCT----GTTATAC----CGAGGTACTAT---ATAAAA-------TG-T-AAA---AAA---T-GG----TC-------ATTTTGGAAAGATACACACGGAAATG------------G-AACGTCCGTCCCCGTAACGT-CCA---------CCTCCCCCT-CCCCCACCT-GCATATACATTCT
gi|23 : ---AAA-A--AA-----CTGTAACGTCCGTCCCCCTGCCATATATTCTTCCAAAAAGATAAACAGAATAATACA--TTTACCTGTT----GACATACATATCCATGTACTAT---ATAAAAAAAAAAGT--T-AAAT--AAAA-CTTGA----TCTGAGCATATTTAAGGAAAATATACACTAAAATGTAAAATTTACATGTAACGTCCGTCCCCGTAACGT-CCG-----------TCCCCCT-
gi|24 : a---AAA-A--AA-----CTGTAACGTCCGTCCCCCCGCCATATATTCTTCCAAAAAGATAAACAGAATAAT--ACATTCACCTGCT----GACATACATATCCATGTACTATCCAAAAAAA-------AGTT-AAAT--AAAACTT-GG----TCTGAGCATATTTAAGGATAATATACACTAAAATG------------a
gi|25 : acaTATTAACGAGAAATT-TG-ATATATTTATTATATAG---T-TAAACCATATACTACGGACACAAATCACACAAAATAATAAAC------AT----A-CAATTTTGAT---TTTATCATA------TTTACAACATTTACGTGTATCACATTGTAATGCATGACCACGAGGAGATATATTTG----CTTTAATAAAAGTGTATTTGTGAAATAATACATAAATTCAGtnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn
gi|26 : TATTAACAAGAAATT-TG-ATATATTTATTATAAAT---T-TACACCATATACTACGGACACAAATCACACAAAATAATATAC------AT----A-CAATTTTGAT---TTTATCATA------TTTACAACATTTACGTGTATTTCATTGTAATGCATGACCACGA-GATATATATTTG----CTTTAACAATAGTGTATTTGTGAAAAAGTAAAT
gi|27 : GAAATTATACATGTATTTATTATAAATATATATACATCATATACAACACATACAC-CCACACAAAATAATATAT------AT----ATCAG---TGAA---TTTATCAAA------T
gi|3 : TATTAACGAGAAATT-TG-ATATATTTATTATAAAT---T-TACACCATATACTACGGACACAAATCACACAAAATAATATAC------AT----A-CATTTTTTAT---TTTATCATA------TTTACAACATTTACGTGTATCACATTGTAATGCATGACCACGAGGAGATATATTTG----CTTTAATAATAGTGTATTTGTAAAATAATACATAAACTCAGAAAATTTCTA-TTAGTGA-CA--AAA-A--AA-----CTGTAACATCTGCATCCCTGGTATATATTCTTCCAAGAAGATAAATAAAATGAT--ATATTCACCTGCT----GTTATAC----TGAGGTACTAT---ATAAAA-------TG-TAAAA---AAAA-AT-GG----TC-------ATTTTGGAAAGATATACAAGGAAATG------------G-AACGTCCGTCCCCGTAACAT-CCC---------CCT-CCCCT-CCCCCACCT-GCATATACATTCT
gi|4 : TATTAACGAGAAATT-TG-TTATATTTATTGTAAAT---T-TACACCATATAATACGGACACAAAACACACAAAATAATATAC------AT----A-CAATTTTGAT---TTGATCATA------TAAACAACATTTACGTGTACCACATTGTAATGCATGATCACGAGGAGATATATTTGCTTTCTTTAATAATAGTGTATTTGTGAAATGATACATAAACTCAGAAAACTTCAT-TTTGTGA-C---AAA-A--AA--------------CTGCATCCCTAGTATATATTCTTCCAAGAAGATAAATAGAATGATACACATTCACCTGCT----GTTATAC----CCAAGTACTAT---ATAAAA-------TG-TAAAA---AAAA-AT-GA----TA-------ATTTTGGAAAGATATACACGGAAATG------------G-AACGTCCGTCCGCGTAACGT-CCG---------CCTCACCCTCCCCCCACCT-GCGTAAACATTC
gi|5 : TATTAACGAGAAATT-TG-ATATATTTATTGTAAAT---T-TACGCCATACACTAAGGACACAAATCACACAAAATAATATAC------AT----A-CAATTTTGAT---TTTATCATA------TTTATAACATTTACGTGTATCACATTGTAATGCATGACCACGAGGAGATATATTTGCTTTCTTTAATAAATGTGTATTTGTGAAATGATACATAAACTCAGAAAATTTCAA-TTTGTGA-C---AAA-A--AA--------------CTGCATCCCTGGTATATATTCTTCCAAGAAGATAAATAGAATGATACACATTCACCTGTT----GTTATAT----CGATGTACTAT---ATAAAA-------TG-T-AAA---AAAA-TT-GG----TC-------ATTTTGGAAAGATATACACGGAAATG------------G-AACGTCCGTCCCCGTAACGT-CCG---------CCTCCCCCT-CCCCCACCT-GCATAAACATTTTc
gi|6 : TATTAGCGAGAAATT-TG-GTATATTCATTGTAAAT---T-TACACCATATACTACGGACAAAAATCACACAAAATAATATAC------AT----A-CAATTTTGAT---TATATCATA------TTTACAACATTTACGTGTATCACATTGTAATGCATGACCACGAGGAGATATATTTGCTTTCTTTAATAAAAGTGTATTTGTGAAATGATACATAAACTCAGAAAATTTCAATTTTGTGA-C---AAA-A--AA--------------CTGCACCCCTGGTATATATTCTTCCAAGAAGATAAATAGAATGATACACATTCAGCTGCT----GTTATAC----CGAGGTACTAT---ATAAAA-------TG-T--AA---AACA-TT-GG----TC-------ACTTTGGAAAGATATACACGGAAATG------------G-AACGTCCGTCCCCGTAGCGT-CCG---------CCTCCCCCT-TCCCCACCT-GTATAAACATTCT
gi|7 : ATTAACAAGAAATT-TG-GTATATTTATTGTAAAT---T-TACACCATATACTATGGACAAAAATCACACAAAATAATATAC------AT----A-CAATTTTGAT---TTTATCATA------TTTACAACATTTATGTATATCACATTGTAATGCATGACCACGAAGAGATATATTTGCTTTCTTTAATAAAAGTGTATTTGTGAAATGATACATAAACTCAGAAAATTTCAA-TTTGTGA-C---AAA-A--AA--------------CTGCATCCCTGGTATATATTCTTCCAAGAAGATAAATAGAATGATACACATTCACCTGCT----GTCATAC----CAAGGTACTAT---ATAAAA-------TG-T--AA---AAAA-TT-GG----TC-------ATTTTGGAAAGATATACACGGAAATG------------G-TATGTCC-TCCCCGTAACGT-CTG---------CCTCCCCCT-CCCCCACCT-GCATAAACATTCT
gi|8 : cTATTAACGAGAAATT-TG-ATATATTTATTGTAAAT---T-TACACCATATACTACAGACACAAATCACACAAAATAATATAC------AT----A-CAATTTTGAT---TTTATCATA------TTTATAACATTTACGTGTATCACATTGTAATGCATGACCACGAGGAGATATATTTGCTTTCTTTAATAAAAGTGTATTTGTGAAATGATACATAAACTCAGAAAATTTCAA-TTTGTGA-C---AAA-A--AA--------------CTGCATCCCTGGTATATATTCTTCCAAGAAGATAAATAGAATGATACACATTCACCTGTT----GTTTTAC----CAAGGTGCTAT---ATAAAA-------TG-TAAAA---AAAA-TT-GG----TC-------ATTTTGGAAAGATATACACGGAAATG------------G-AACGTCCGTCCCCGTAACGT-CCG-------------CCCCT-CCCCCACCT-GCATACACATTCT
gi|9 : TATTAACGAGAAATT-TG-TTATATTTATTGTAAAT---T-TACCCAATATACTACGGACACATATCACACAAAATAATATAC------ATGTATA-CAATTTTGAT---TTTATCATA------TTTACAACATTTACGTGTATCACATTGTAATGCATGACCACGAGGAGATATATTTGCTTTCTTTAATAAAAGTGTATTTGTGAAATGATACATAAACTCAGAAAATTTCAA-TTTGTGA-C---AAA-A--AA--------------CTACATCCCTGGTATATATTCTTCCAAGAAGATGAATAGAA-GGT--------ACCTGCT----GTTATAC----CGAGGTACTAG---GTAAAA-------TG-T-AAA---AAAA-TT-GG----TC-------ATTTTGGAAAGATATGCACGGAAACG------------G-AACGCCCGTCCCCGTAACAT-CCG---------CCTCTCCCT-CCCCCATCT-GCATAAACATTCT