lowQualScore : 1 1 11111 111 11 1111 11 1
lowQualScore : 2 6 444444 4 2 1 1 333 22 888 55 11111 1 7 000 66 0 777 333 00 2 4 6666 44 22 777 22 2 2 444 33 88 2 66 2 6 5
lowQualScore : . . ...... . . . . ... .. ... .. ..... . . ... .. . ... ... .. . . .... .. .. ... .. . . ... .. .. . .. . . .
lowQualScore : 4 5 000000 2 1 6 2 555 66 222 99 11111 9 6 444 11 3 444 777 99 1 2 3333 44 22 333 44 6 5 444 88 44 7 11 8 7 7
consensus : ACTGCATAT-CAAATTTTGCAAAT--AT--A-T-TTTGGGAGT--ACGT--CAACAAAC--NCC-AAAT-TAT-G-CCGT-TTA--CGGG-GAACTA---G---GGAGAT-T-TCCATTA---TCTGT-AATANGTAAAGAAAGGTCAT-TAAAAT---T-TTGG--TT-AAAAATAATG-AGTGATGTTAACTCACCTATATAC
Reference ( gi|6 ) : ACTGCATAT-CAAATGTTGCAAGT--AT--A-T-TTTGTGAGT--ACGT--CAACAAAC--GTC-AAAT-TAT-G-CTGT-TTA--TGGG-GAATTA---G---GGTGAT-T-TCCATTA---ACTGT-AATAAGTAGGGAAAGGTCGT-TAAAAT---T-TTGG--TT-AAAGGTAATG-AGTGATGTTAACTCACCTATATAC
gi|7 : ACTGCATAT-CAACTTTTGCAAGT--AT--A-T-TTTGGGAGT--ACGT--CAACAAAC--GTC-AAAT-TAT-G-CTGT-TTA--TGGG-AAATAA---G---GGCGAT-T-TCCATTA---AATGT-AATAAGTAGAGAAAGATCGT-TAAAGC---T-TTGG--TT-AAAGATAATG-AGTGATGTTAACTCACCTATATA
gi|16 : aACTGCATAT-CAAATTTTGCAAGG--AT--A-T-TTTGGGAG--------------AAC--ATC-AAAT-TAT-G-CTGC-TTA--CGGG-GAATTA---G---GGCGAT-T-TCCATTA---ACTGT-AATAAGTAGTGAAAGGTCGT-TAAAAT---T-TTGG--TT-AAAGATAATG-AGTGATGTTAACTCACCTATATAC
gi|17 : aACTGCATAC-CAAAT------AGT--------T-TTTA-AAAT--ACGT--CAACAAAC--TTC-AAAT-CAT-G-CCGT-CTA--CTGG-GAAATA---G---GGCCAT-T-TCTATTA---ACTAT-AATAAGTAAGGAAAGATCCT-TAAAAT---T-TTGG--TT-AAAGTTATTG-ATTAATGTTAACTCACCT
gi|28 : aaACTGCATAT-CAAATTTTGCAAGT--AT--A-T-TTTTTGAGT--ACAT--AAACAAAT--GTC-AAAT-CAT-G-CTGT-TTA--TGGG-GAATTA---G---GATGAT-T-TCCATTA---ACTGT-AATAAtttta
gi|30 : aaACTGCATAT-CAAATTTTGCAAGT--AT--ATT-TTTGT-AGT--ACGT--CAACGAAC--GTC-AAAT-TAT-G-TTGT-TTA--AGGcagacatgtgaactctc
gi|29 : aaACTGCATAT-CAAATTTTGCAAGT--AT--ATT-TTTGT-AGT--ACGT--CAACGAAC--GTC-AAAT-TAT-G-TTGT-TTA--AGGtcttaaaattatgtttaaaaataatgagtgatgttaactcacctat
gi|19 : aaATTACATAT-TAAATTCTGTAAAT--AC--A-T-ATTGGGTGT--ACGT--CAACAAAC--ACC-TAA--CATGG-CCGT-ATA--TGCC-GAATTA---G---GGAGAC-T-ACCATTA---TC----AAT-------GCAAAGTC-T-CCAAAT---T-TTGG--tcttaaaattatgtttaaaaataatgagtgatgttaactcacctat
gi|1 : gttgataaATTACACAT-AAAATTTTGCTAAC--AT--A-T-TTTAGGTGT--AAAA--CAGCAAAC--TCC-GAACATA--G-CCGT-TT---TAGGTGAACTA---G---GTAGAT-T-TCCTATA---TCTGT-GATaagtgctttgttaaacaaaaaaa
gi|10 : aaACTGCATATACGTTTTTTGTAAAT--ATGTA-T-TATGTGATT----GA--AAACAAAC--CCCCAAAC-CAA-G---AT-CTAAGCGGT-GAACTA---G---GTACAC-T-CCCGTTG----CAGTTAACAGGAAAGGAAATATCAAATAAGAT---T-T-GG--TT-GAAAATAATG-AAAAATGTTGATTCTCCttctatagaacgttccattatgtactggactaagatcataaagcaatcgaattcaattttgtataa
gi|13 : TACATAT-AAAATTTTGTAAAC--GC--A-T-ATTGGGAGT--GTGC--TTACAAAC--ACC-TAAT-TAT-G-CTGT-ATA--CGGC-GAATTA---G---GGATAT-T-TCCTTTA---TCATT-AATTTGTAAAGAAAGATCTT-TAAAAT---T-TTGA--TT-AAAAATTATGAAGT-CCGTTAACTCGCCTAa
gi|9 : TGCGTAT-CAAATTCTGTAAAT--A----------GTGGGTGTACGT--CAACAAAC--ACC-CTAA-CAT-GGCCGT-CTA--TGAC-GAATTA---T---GGAGACGT-CCCATTATAAATT----ATGAGTAAAGAGCATTCAA-TAAAGT---T-ATGG--TTAAAAAGT-ATG-AAAAATGTTAA--CACCTTTA
gi|5 : TACATAT-TTAGTTCTGCAAAC--GC--A-T-TTTAGGTGT--TCGT--AAGCAAAC--CTC-AAATCTA--G-CTGTATTA---GGG-GAACTA---G---GAATAT-A-TCCACTG---TCAAT-TATAGCTAAAGATAGAGCAT-TAAAAT---T-CTGGACTT---AGATTATG-AGcttac
gi|11 : aaaCATAT-CAAATTCTGCAGAT--AT--A-TATTTG-GTGT--ACGT--AAACAAACCAGT---AAT-TCT-G-CTGT-TAA--CGGT-AAACAA---G---GAAGGT-A-TCCATTA---TCTGT-AATTGCTAAAGAGAGGTAAT-TAAAAT---T-ATGG--TT-GAAAATAAAG-AATGTTGTTAATTCAAATATAaaacccaaattctattatatata
gi|8 : ttCATAT-ACAATTTTGTAAAC--GC--A-T-ATTGAGAGT--GCGC--CAATAAAT--ACC-TAAT-TAT-G-CTAT-ATA--TGGT-TAACTA---G---GAAGAT-T-TCCTCTA---TCATT-AATCTGTAAAGAAAGATCTT-TAAAGT---T-TCAG--TT-AAGAATTGTGAAGT-CTGTTAACTCGCCTATTTA
gi|18 : aCATAT-TAA-----GCAAAC--GT--A-T-CTTA-GA-T--GTGTAACCACAAAC--TCC-TAACGTA--G-CTGTATTA---GGT-GAACTA---G---GGAGAT-T-TCCATAA---TCTGT-TATtg
gi|14 : aaatgtCACAT-AAAATTTTGCAAAC--AT--A-T-T-----AA---------CAGCAAAC--TCC-GAAC-AAA-G-CCGT-TTT--CGGT-GAACTA---G---GTAGAT-T-TCCTATA---TCTGT-GATctgtaaacaacgtgcaataagctatatgagttatgaaaagaaccaattctattta
gi|12 : aaataaT-TAAATTTTGCAAGTTTCT--A-C-TTGGTG--T--ACGT--AAACAAAC--CTC-TAAT-GTT-G-CTGT-TTA--CGTT-GAATTA---G---GAAGGT-A-TCCATTA---TCTGT-AATTTCTA-CGAGAGGTCAT-TAAAAT---T-CCGG--TT-GGAAATGAAG-AATTATGTTAATTCATCTATATAttctaaagaacgttccattatgtactggactaagatcatgaagcaaccaaattcaattttgcat
gi|15 : cTTGTAAAC--GC--A-T-TTTCAGAGT--GCGC--CAACAAAC--AGC----T-TAT-G-CTGT-ATA--TGAG-GAATGA---GGACGGTAAT-T-TGTATTA-----T-T-AATATGCAAAGAAATGTTTT-TAAAATAAATGTTGA--TT-AAAta
gi|23 : atcacaaataattatttT--A-T-TTTAGGTGT--AAAA--CAGCAAAT--TCC-GAAC--ATAG-CCGT-TT---TAGGCGAACTA---G---GTAGAT-T-TCCTTTA---TCTGT-GATaagttttaattcctttatat
gi|3 : T--CAGCCAAC--ATC-AAATCTA--G-CTGTATTA---GTG-GAACTATGAA---GATAAT-TATCCACTG---TCAAT-TATAGCTAAAGAGAGAGCAT-TAAAAT---T-CTGGA-TT-AAttctaaagagcgctccattatgtactggactaatatcatgaagcaaccgaattcaattttgtataa
gi|2 : T--CAGCCAAC--ATC-AAATCTA--G-CTGTATTA---GTG-GAACTATGAA---GATAAT-TATCCACTG---TCAAT-TATAGCTAAAGAGAGAGCAT-TAAAAT---T-CTGGA-TT-AAgattttgataagcccaaattctattatatatagatcttttattgatcaatgcgaatctatcactggtaaa
gi|30 : AAGGTC-T-TAAAAT---T-ATGT--TT-AAAAATAATG-AGTGATGTTAACTCACCTATgattttgataagcccaaattctattatatatagatcttttattgatcaatgcgaatctatcactggtaaa
gi|29 : aaactgcatatcaaattttgcaagtatatttttgtagtacgtcaacgaacgtcaaattatgttgtttAAGGTC-T-TAAAAT---T-ATGT--TT-AAAAATAATG-AGTGATGTTAACTCACCTAT
11 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|4 ): TAAATTACACATACAATTTTGCAAACATATTTAAGGTGTAAAACAGCAATTTCCGAACTTTGCCGTTTTATGTGAACTAGGTAGATTACTTTATATCTGTGATTTCTAAAGAGCGTTCCATTATGTACTGGACTAAGATCATGAAGCAACTGAATTCAATTTTGTAT
Unaligned ( gi|20 ): ACCGCATAATTGTATACGTTTTTGTAAATATGGATTACTACTAATCTCAAGCTACACTGTATAAGTACTAGGTAGATTCCCGTTACGTGTATCTATAATGCACAAGGACAATGATCATTTAAATGAAAACTGCAAAATGTGGATAA
Unaligned ( gi|21 ): AAATACATGTAAAATTGTGTAAGCGTATTTTAGGGGTAAAACTCAAACACCAACTCTTGCTGTTCTCTCTGCGATTTAGGCGGATATCCTTTATCGAGTATTTGTAAAGAACGAACAAATAAATTTTGGATGAAAATCAAATG
Unaligned ( gi|22 ): CAGTAAACTTCAAATCTAGCTGCTTCGGGGAGCTTAGAAGCCTTCCACTGTTAATTATTACCTAAGAGAGACCATTATTTTTATTAAGATCTTGGAAAACAAACCCTAGTTTTGTTATTCATATATCCTTTGCCGATCATTG
Unaligned ( gi|24 ): AAATACATGTAAAATTCTGCAAGCGTATTTTAGGGATTTAATTTCAAACACCTAATCTTGCTGTGCTGTGTGATCAAGGCAGATAGCCTTTATCGATTATTTGTAAAGAACGAGCGATTAAATTTTAGATAAAAAGCA
Unaligned ( gi|25 ): AATACATGTAAAATCATGTAAACGTATTTTAGGAGTTAAAACTCAAACACATAATCCCACTGTGTTGTGTGATACCGGAAGATTTCCTTTATCGATTAGTTGTAAAGAACGAGCGATTAAATTTTGGATAATAATC
Unaligned ( gi|26 ): AATGTACCCCTGTCAATTATTGCTAAATGTAGAGAATTAAAATTTTGGAGTAAGATAATGAAAAACCCAATTGAATTATGTTATTCATAAATCTTTTTGTTGATAAATGTGAAAATATCACTGGTAAA
Unaligned ( gi|27 ): AAATACATTTATCATTCTGCAAGAGTATTTTAGGAGCTGAAACCCAAGCATTAAATCTTGCTGTTCTGGGTGATACCCTATATCGATTTATTGTATAGAACGAGAGATTAAGTTTAAATGAAAATAA
Unaligned ( gi|31 ): TAGGGAGATTTCCATTATCTGTTATCTGTAAACAACGTGCTATAAGCTATTGGACAAAAGTTATGGAAAAAACCAATTCTATTTAAT
Unaligned ( gi|32 ): TGTGATTGCTAAAGAACTTTCCATTATGTACTGGACTAAGATCATGAAGCAAACGAATTCAATTTTGTATAAAT
Unaligned ( gi|33 ): AATTATAGCTAAAGAGAGACTGGACTAAGATCATGAAAAACCAAATTCTATTACATGTATAT
Alignments
lowQualScore : 111 11
lowQualScore : 33 22 3 2 44 0 888 1 6666 88888 1 2 9 222 000 3 2 222 777 3 1 1 66666 22 00 0 8888 44 1 333 1 66 444 5 4
lowQualScore : .. .. . . .. . ... . .... ..... . . . ... ... . . ... ... . . . ..... .. .. . .... .. . ... . .. ... . .
lowQualScore : 11 33 3 0 55 5 111 5 8888 77777 5 0 2 777 222 5 8 888 222 2 0 6 77777 33 33 6 1111 44 6 333 9 44 111 3 4
consensus : ACTGCATAT-CAAATTTTGCAAGCGT--ATTTTGGGNGTACGTCAA---CAAACGCC-A--AAT-TAT-G-CTGT-T---TA--CGGNGAACTAGGGAG---AT---T-TCCAT-TATCT-G--T-AATNTGTAAAGAAAG-GT-C-AT-TAAAAT---T-TTGG--TTAAAAAT--AATG-AGTGATGTTAACTCACCTATATAC
Reference ( family-409 ) : ACTGCATAT-CAAATTTTGCAAATAT--ATTTTGGGAGTACGTCAA---CAAACNCC-A--AAT-TAT-G-CCGT-T---TA--CGGGGAACTAGGGAG---AT---T-TCCAT-TATCT-G--T-AATANGTAAAGAAAG-GT-C-AT-TAAAAT---T-TTGG--TTAAAAAT--AATG-AGTGATGTTAACTCACCTATATAC
gi|1 : ATTACACAT-AAAATTTTGCTAACAT--ATTTTAGGTGTAAAACAG---CAAACTCC-G--AA--CATAG-CCGT-T---TT--AGGTGAACTAGGTAG---AT---T-TCCTA-TATCT-G--T-GATTTCTATAGAACG-TTCC-AT-TA
gi|10 : aaACTGCATATACGTTTTTTGTAAATATGTATTATGTGATT--GAAAA---CAAACCCCCA--AAC-CAA-G---AT-C---TAAGCGGTGAACTAGGTAC---AC---T-CCCGT-TG-CA-G--TTAACAGGAAAGGAAAT-AT-C-AAATAAGAT---T-T-GG--TTGAAAAT--AATG-AAAAATGTTGATTCTCCtgtactggactaagatcataaagcaatcgaattcaattttgtataa
gi|11 : CATAT-CAAATTCTGCAGATAT--ATATTTGGTGTACGTAAA---CAAA--CC-AGTAAT-TCT-G-CTGT-T---AA--CGGTAAACAAGGAAG---GT---A-TCCAT-TATCT-G--T-AATTGCTAAAGAGAG-GT-A-AT-TAAAAT---T-ATGG--TTGAAAAT--AAAG-AATGTTGTTAATTCAAATATAa
gi|12 : ttT-TAAATTTTGCAAGTTT--CTACTTGGTGTACGTAAA---CAAACCTC-T--AAT-GTT-G-CTGT-T---TA--CGTTGAATTAGGAAG---GT---A-TCCAT-TATCT-G--T-AATTTCT-ACGAGAG-GT-C-AT-TAAAAT---T-CCGG--TTGGAAAT--GAAG-AATTATGTTAATTCATCTATATA
gi|13 : cTACATAT-AAAATTTTGTAAACGC--ATATTGGGAGTGTGCTTA---CAAACACC-T--AAT-TAT-G-CTGT-A---TA--CGGCGAATTAGGGAT---AT---T-TCCTT-TATCA-T--T-AATTTGTAAAGAAAG-AT-C-TT-TAAAAT---T-TTGA--TTAAAAAT--TATGAAGT-CCGTTAACTCGCCTAta
gi|14 : CACAT-AAAATTTTGCAAACAT--ATT----AA------CAG---CAAACTCC-G--AAC-AAA-G-CCGT-T---TT--CGGTGAACTAGGTAG---AT---T-TCCTA-TATCT-G--T-GATTTCTAAAGAACG-TTCC-AT-TA
gi|15 : aaataaTTTTGTAAACGC--ATTTTCAGAGTGCGCCAA---CAAACAGC------T-TAT-G-CTGT-A---TA--TGAGGAATGAGGACGGTAAT---T-TGTAT-TAT------T-AATATGCAAAGAAAT-GT-T-TT-TAAAATAAATGTTGA--TTAAAAAtgtactggactaagatcatgaagcaaccaaattcaattttgcat
gi|16 : atcacaaataattatACTGCATAT-CAAATTTTGCAAGGAT--ATTTTGGGAG-------------AACATC-A--AAT-TAT-G-CTGC-T---TA--CGGGGAATTAGGGCG---AT---T-TCCAT-TAACT-G--T-AATAAGTAGTGAAAG-GT-C-GT-TAAAAT---T-TTGG--TTAAAGAT--AATG-AGTGATGTTAACTCACCTATATACgttttaattcctttatat
gi|17 : aACTGCATAC-CAAAT------AGT-----TTTTAAAA-TACGTCAA---CAAACTTC-A--AAT-CAT-G-CCGT-C---TA--CTGGGAAATAGGGCC---AT---T-TCTAT-TAACT-A--T-AATAAGTAAGGAAAG-AT-C-CT-TAAAAT---T-TTGG--TTAAAGTT--ATTG-ATTAATGTTAACTCACCT
gi|18 : aaATGT-CATATTAAGCAAACGT--ATCTTAGATGTGTAACCA---CAAACTCC-T--AACGTA--G-CTGTAT---TA---GGTGAACTAGGGAG---AT---T-TCCAT-AATCT-G--T-TATCTGTAAACAAtttta
gi|19 : aaATTACATAT-TAAATTCTGTAAATAC--ATATTGGGTGTACGTCAA---CAAACACC-T--AA--CATGG-CCGT-A---TA--TGCCGAATTAGGGAG---AC---T-ACCAT-TATC-------AAT--GCAAA------GT-C--T-CCAAAT---T-TTGG--cgtgcaataagctatatgagttatgaaaagaaccaattctattta
gi|2 : gttgataaTCAG---CCAACATC-A--AATCTA--G-CTGTAT---TA---GTGGAACTATGAAG---ATAATTATCCAC-TGTCA-A--T-TATAGCTAAAGAGAG-AG-C-AT-TAAAAT---T-CTGGA-TTAAGAaagtgctttgttaaacaaaaaaa
gi|21 : TACATGT-AAAATTGTGTAAGCGT--ATTTTAGGGGTA----AAACTCAAACACC-A--ACT-CTT-G-CTGT-TCTCT---CTGCGATTTAGGCGG---AT---A-TCCTT-TATCGAG--T-ATT-TGTAAAGAACG-AA-C-AA-ATAAAT---T-TTGG--ATGAAAATCAAATG-ttttgataagcccaaattctattatatatagatcttttattgatcaatgcgaatctatcactggtaaa
gi|23 : aaaT--ATTTTAGGTGTAAAACAG---CAAATTCC-G--AACATA--G-CCGT-T---TT--AGGCGAACTAGGTAG---AT---T-TCCTT-TATCT-G--T-GATTTCTAAAGAGCG-CTCC-AT-TA
gi|24 : TACATGT-AAAATTCTGCAAGCGT--ATTTTAGGGAT---TTAATTTCAAACACC-T--AAT-CTT-G-CTGTGC---TG--TGTG-ATCAAGGCAG---AT---A-GCCTT-TATCG-A--T-TATTTGTAAAGAACGAGC-G-AT-T-AAAT---T-TTAG--ATAAAAAtgtactggactaatatcatgaagcaaccgaattcaattttgtataa
gi|25 : aaaTACATGT-AAAATCATGTAAACGT--ATTTTAGGAGT---TAAAACTCAAACACA-T--AAT-CCC-A-CTGTGT---TG--TGTGATACC-GGAAG---AT---T-TCCTT-TATC--GATT-AGT-TGTAAAGAACG-AG-CGAT-TAAA-T---T-TTGG--ATAATAAT--gca
gi|28 : aaACTGCATAT-CAAATTTTGCAAGTAT--ATTTTTTGAGTACATAAA---CAAATGTC-A--AAT-CAT-G-CTGT-T---TA--TGGGGAATTAGGATG---AT---T-TCCAT-TAACT-G--T-AATAc
gi|29 : aaACTGCATAT-CAAATTTTGCAAGTAT--ATTTTTGTAGTACGTCAA---CGAACGTC-A--AAT-TAT-G-TTGT-T---TA--AGGacagacatgtgaactctc
gi|29 : aaAAG-GT-C--T-TAAAAT---T-ATGT--TTAAAAAT--AATG-AGTGATGTTAACTCACCTATtcttaaaattatgtttaaaaataatgagtgatgttaactcacctat
gi|3 : aaactgcatatcaaattttgcaagtatatttttgtagtacgtcaacgaacgtcaaattatgttgtttTCAG---CCAACATC-A--AATCTA--G-CTGTAT---TA---GTGGAACTATGAAG---ATAATTATCCAC-TGTCA-A--T-TATAGCTAAAGAGAG-AG-C-AT-TAAAAT---T-CTGGA-TTAAGA
gi|30 : ACTGCATAT-CAAATTTTGCAAGTAT--ATTTTTGTAGTACGTCAA---CGAACGTC-A--AAT-TAT-G-TTGT-T---TA--AGGttttgataagcccaaattctattatatatagatcttttattgatcaatgcgaatctatcactggtaaa
gi|30 : aaAAG-GT-C--T-TAAAAT---T-ATGT--TTAAAAAT--AATG-AGTGATGTTAACTCACCTATtcttaaaattatgtttaaaaataatgagtgatgttaactcacctat
gi|31 : aaactgcatatcaaattttgcaagtatatttttgtagtacgtcaacgaacgtcaaattatgttgtttTAGGGAG---AT---T-TCCAT-TATCT-G--T-TATCTGTAAACAACGTGC-T-A--TAAGCT---A-TTGG--ACAAAAGT--TATG-
gi|4 : ATTACACAT-ACAATTTTGCAAACAT--ATTTAAGGTGTAAAACAG---CAATTTCC-G--AAC-TTT-G-CCGT-T---TT--ATGTGAACTAGGTAG---AT---T-ACTTTATATCT-G--T-GATTTCTAAAGAGCG-TTCC-AT-TAgaaaaaaccaattctatttaat
gi|5 : taaTACATAT-TTAGTTCTGCAAACGC--ATTTTAGGTGTTCGTAAG---CAAACCTC-A--AATCTA--G-CTGTAT---TA---GGGGAACTAGGAAT---AT---A-TCCAC-TGTCA-A--T-TATAGCTAAAGATAG-AG-C-AT-TAAAAT---T-CTGGACTT--AGAT--TATG-AGtgtactggactaagatcatgaagcaactgaattcaattttgtat
gi|6 : aaaACTGCATAT-CAAATGTTGCAAGTAT--ATTTTGTGAGTACGTCAA---CAAACGTC-A--AAT-TAT-G-CTGT-T---TA--TGGGGAATTAGGGTG---AT---T-TCCAT-TAACT-G--T-AATAAGTAGGGAAAG-GT-C-GT-TAAAAT---T-TTGG--TTAAAGGT--AATG-AGTGATGTTAACTCACCTATATACaaacccaaattctattatatata
gi|7 : ACTGCATAT-CAACTTTTGCAAGTAT--ATTTTGGGAGTACGTCAA---CAAACGTC-A--AAT-TAT-G-CTGT-T---TA--TGGGAAATAAGGGCG---AT---T-TCCAT-TAAAT-G--T-AATAAGTAGAGAAAG-AT-C-GT-TAAAGC---T-TTGG--TTAAAGAT--AATG-AGTGATGTTAACTCACCTATATA
gi|8 : aCATAT-ACAATTTTGTAAACGC--ATATTGAGAGTGCGCCAA---TAAATACC-T--AAT-TAT-G-CTAT-A---TA--TGGTTAACTAGGAAG---AT---T-TCCTC-TATCA-T--T-AATCTGTAAAGAAAG-AT-C-TT-TAAAGT---T-TCAG--TTAAGAAT--TGTGAAGT-CTGTTAACTCGCCTATTTA
gi|9 : aTGCGTAT-CAAATTCTGTAAATAG------TGGGTGTACGTCAA---CAAACACC-C--TAA-CAT-GGCCGT-C---TA--TGACGAATTATGGAG---ACG--T-CCCAT-TATAA-A--T-TATGAGTAAAGAGCA-TT-C-AA-TAAAGT---T-ATGG--TTAAAAAG--TATG-AAAAATGTTAA--CACCTTTAtg
6 sequences could not be aligned to this reference sequence:
Unaligned ( gi|20 ): ACCGCATAATTGTATACGTTTTTGTAAATATGGATTACTACTAATCTCAAGCTACACTGTATAAGTACTAGGTAGATTCCCGTTACGTGTATCTATAATGCACAAGGACAATGATCATTTAAATGAAAACTGCAAAATGTGGATAA
Unaligned ( gi|22 ): CAGTAAACTTCAAATCTAGCTGCTTCGGGGAGCTTAGAAGCCTTCCACTGTTAATTATTACCTAAGAGAGACCATTATTTTTATTAAGATCTTGGAAAACAAACCCTAGTTTTGTTATTCATATATCCTTTGCCGATCATTG
Unaligned ( gi|26 ): AATGTACCCCTGTCAATTATTGCTAAATGTAGAGAATTAAAATTTTGGAGTAAGATAATGAAAAACCCAATTGAATTATGTTATTCATAAATCTTTTTGTTGATAAATGTGAAAATATCACTGGTAAA
Unaligned ( gi|27 ): AAATACATTTATCATTCTGCAAGAGTATTTTAGGAGCTGAAACCCAAGCATTAAATCTTGCTGTTCTGGGTGATACCCTATATCGATTTATTGTATAGAACGAGAGATTAAGTTTAAATGAAAATAA
Unaligned ( gi|32 ): TGTGATTGCTAAAGAACTTTCCATTATGTACTGGACTAAGATCATGAAGCAAACGAATTCAATTTTGTATAAAT
Unaligned ( gi|33 ): AATTATAGCTAAAGAGAGACTGGACTAAGATCATGAAAAACCAAATTCTATTACATGTATAT
Alignments
lowQualScore : 111
lowQualScore : 33 44444 3 1 44 0 888 77 5555 88888 1 9 222 000 1 1 2 222 777 3 1 1 55 55 33 0 8888 2 1 333 1 66 444 5 4
lowQualScore : .. ..... . . .. . ... .. .... ..... . . ... ... . . . ... ... . . . .. .. .. . .... . . ... . .. ... . .
lowQualScore : 11 44444 7 6 55 6 111 33 8888 77777 5 2 777 222 0 7 8 888 222 2 0 6 77 33 00 6 7777 8 6 333 9 44 111 3 4
consensus : ACTGCATAT-CAAATTTTGCAAGC--GTATTTTNGGNGTACGTCAA---CAAAC-GCC-A--AAT-TAT-G-CTGT-T---TA--CGGNGA-ACTAGGGAG---AT---T-TCCAT-TATCN-GT-NATNTGTAAAGAAAG-GT-CAT-TAAAAT---T-TTGG--TTAAAAAT--AATG-AGTGATGTTAACTCACCTATATAC
Reference ( family-409 ) : ACTGCATAT-CAAATTTTGCAAGC--GTATTTTGGGNGTACGTCAA---CAAAC-GCC-A--AAT-TAT-G-CTGT-T---TA--CGGNGA-ACTAGGGAG---AT---T-TCCAT-TATCT-GT-AATNTGTAAAGAAAG-GT-CAT-TAAAAT---T-TTGG--TTAAAAAT--AATG-AGTGATGTTAACTCACCTATATAC
gi|1 : ATTACACAT-AAAATTTTGCTAAC--ATATTTTAGGTGTAAAACAG---CAAAC-TCC-G--AA--CATAG-CCGT-T---TT--AGGTGA-ACTAGGTAG---AT---T-TCCTA-TATCT-GT-GATTTCTATAGAACG-TTCCAT-TA
gi|10 : aaACTGCATATACGTTTTTTGTAAATATGTATTATGTGATT--GAAAA---CAAAC-CCCCA--AAC-CAA-G---AT-C---TAAGCGGTGA-ACTAGGTAC---AC---T-CCCGT-TG-CA-GTTAACAGGAAAGGAAAT-AT-CAAATAAGAT---T-T-GG--TTGAAAAT--AATG-AAAAATGTTGATTCTCCtgtactggactaagatcataaagcaatcgaattcaattttgtataa
gi|11 : CATAT-CAAATTCTGCAGAT--ATATATTTGGTGTACGTAAA---CAAA---CC-AGTAAT-TCT-G-CTGT-T---AA--CGGTAA-ACAAGGAAG---GT---A-TCCAT-TATCT-GT-AATTGCTAAAGAGAG-GT-AAT-TAAAAT---T-ATGG--TTGAAAAT--AAAG-AATGTTGTTAATTCAAATATAa
gi|12 : ttT-TAAATTTTGCAAGT--TTCTACTTGGTGTACGTAAA---CAAAC-CTC-T--AAT-GTT-G-CTGT-T---TA--CGTTGA-ATTAGGAAG---GT---A-TCCAT-TATCT-GT-AATTTCT-ACGAGAG-GT-CAT-TAAAAT---T-CCGG--TTGGAAAT--GAAG-AATTATGTTAATTCATCTATATA
gi|13 : cTACATAT-AAAATTTTGTAAAC--GCATATTGGGAGTGTGCTTA---CAAAC-ACC-T--AAT-TAT-G-CTGT-A---TA--CGGCGA-ATTAGGGAT---AT---T-TCCTT-TATCA-TT-AATTTGTAAAGAAAG-AT-CTT-TAAAAT---T-TTGA--TTAAAAAT--TATGAAGT-CCGTTAACTCGCCTAta
gi|14 : CACAT-AAAATTTTGCAAAC--ATATT----------AACAG---CAAAC-TCC-G--AAC-AAA-G-CCGT-T---TT--CGGTGA-ACTAGGTAG---AT---T-TCCTA-TATCT-GT-GATTTCTAAAGAACG-TTCCAT-TA
gi|15 : aaataaTTTTGTAAAC--GCATTTTCAGAGTGCGCCAA---CAAACAGC-------T-TAT-G-CTGT-A---TA--TGAGGA-ATGAGGACGGTAAT---T-TGTAT-TAT----T-AATATGCAAAGAAAT-GT-TTT-TAAAATAAATGTTGA--TTAAAAAtgtactggactaagatcatgaagcaaccaaattcaattttgcat
gi|16 : atcacaaataattatACTGCATAT-CAAATTTTGCAAGG--ATATTTTGGGAG-------------AAC-ATC-A--AAT-TAT-G-CTGC-T---TA--CGGGGA-ATTAGGGCG---AT---T-TCCAT-TAACT-GT-AATAAGTAGTGAAAG-GT-CGT-TAAAAT---T-TTGG--TTAAAGAT--AATG-AGTGATGTTAACTCACCTATATACgttttaattcctttatat
gi|17 : aACTGCATAC-CAAAT------AG------TTTTTAAAATACGTCAA---CAAAC-TTC-A--AAT-CAT-G-CCGT-C---TA--CTGGGA-AATAGGGCC---AT---T-TCTAT-TAACT-AT-AATAAGTAAGGAAAG-AT-CCT-TAAAAT---T-TTGG--TTAAAGTT--ATTG-ATTAATGTTAACTCACCT
gi|18 : aaATGT-CATATTAAGCAAAC--GTATCTTAGATGTGTAACCA---CAAAC-TCC-T--AACGTA--G-CTGTAT---TA---GGTGA-ACTAGGGAG---AT---T-TCCAT-AATCT-GT-TATCTGTAAACAAtttta
gi|19 : aaATTACATAT-TAAATTCTGTAAAT--ACATATTGGGTGTACGTCAA---CAAAC-ACC-T--AA--CATGG-CCGT-A---TA--TGCCGA-ATTAGGGAG---AC---T-ACCAT-TATC-----AA--TGCAAA------GT-C-T-CCAAAT---T-TTGG--cgtgcaataagctatatgagttatgaaaagaaccaattctattta
gi|2 : gttgataaTCAG---CCAAC-ATC-A--AATCTA--G-CTGTAT---TA---GTGGA-ACTATGAAG---ATAATTATCCAC-TGTCA-AT-TATAGCTAAAGAGAG-AG-CAT-TAAAAT---T-CTGGA-TTAAGAaagtgctttgttaaacaaaaaaa
gi|21 : TACATGT-AAAATTGTGTAAGC--GTATTTTAGGGGTA----AAACTCAAAC-ACC-A--ACT-CTT-G-CTGT-TCTCT---CTGCGA-TTTAGGCGG---AT---A-TCCTT-TATCGAGT--ATTTGTAAAGAACG-AA-CAA-ATAAAT---T-TTGG--ATGAAAATCAAATG-ttttgataagcccaaattctattatatatagatcttttattgatcaatgcgaatctatcactggtaaa
gi|23 : aaaTATTTTAGGTGTAAAACAG---CAAAT-TCC-G--AACATA--G-CCGT-T---TT--AGGCGA-ACTAGGTAG---AT---T-TCCTT-TATCT-GT-GATTTCTAAAGAGCG-CTCCAT-TA
gi|24 : TACATGT-AAAATTCTGCAAGC--GTATTTTAGGGAT---TTAATTTCAAAC-ACC-T--AAT-CTT-G-CTGTGC---TG--T-GTGA-TCAAGGCAG---AT---A-GCCTT-TATCG-AT-TATTTGTAAAGAACGAGC-GAT-T-AAAT---T-TTAG--ATAAAAAtgtactggactaatatcatgaagcaaccgaattcaattttgtataa
gi|25 : aaaTACATGT-AAAATCATGTAAAC--GTATTTTAGGAGT---TAAAACTCAAAC-ACA-T--AAT-CCC-A-CTGTGT---TG--TG-TGATACC-GGAAG---AT---T-TCCTT-TATCG-AT-TAGTTGTAAAGAACGAGC-GAT-T-AAAT---T-TTGG--ATAATAAT--gca
gi|28 : aaACTGCATAT-CAAATTTTGCAAGT--ATATTTTTTGAGTACATAAA---CAAAT-GTC-A--AAT-CAT-G-CTGT-T---TA--TGGGGA-ATTAGGATG---AT---T-TCCAT-TAACT-GT-AATc
gi|29 : aaACTGCATAT-CAAATTTTGCAAGT--ATATTTTTGTAGTACGTCAA---CGAAC-GTC-A--AAT-TAT-G-TTGT-T---TA--AGGaacagacatgtgaactctc
gi|29 : aaAAG-GT-C-T-TAAAAT---T-ATGT--TTAAAAAT--AATG-AGTGATGTTAACTCACCTATtcttaaaattatgtttaaaaataatgagtgatgttaactcacctat
gi|3 : aaactgcatatcaaattttgcaagtatatttttgtagtacgtcaacgaacgtcaaattatgttgtttTCAG---CCAAC-ATC-A--AATCTA--G-CTGTAT---TA---GTGGA-ACTATGAAG---ATAATTATCCAC-TGTCA-AT-TATAGCTAAAGAGAG-AG-CAT-TAAAAT---T-CTGGA-TTAAGA
gi|30 : ACTGCATAT-CAAATTTTGCAAGT--ATATTTTTGTAGTACGTCAA---CGAAC-GTC-A--AAT-TAT-G-TTGT-T---TA--AGGttttgataagcccaaattctattatatatagatcttttattgatcaatgcgaatctatcactggtaaa
gi|30 : aaAAG-GT-C-T-TAAAAT---T-ATGT--TTAAAAAT--AATG-AGTGATGTTAACTCACCTATtcttaaaattatgtttaaaaataatgagtgatgttaactcacctat
gi|31 : aaactgcatatcaaattttgcaagtatatttttgtagtacgtcaacgaacgtcaaattatgttgtttTAGGGAG---AT---T-TCCAT-TATCT-GT-TATCTGTAAACAACGTGC-TA--TAAGCT---A-TTGG--ACAAAAGT--TATG-
gi|4 : ATTACACAT-ACAATTTTGCAAAC--ATATTTAAGGTGTAAAACAG---CAATT-TCC-G--AAC-TTT-G-CCGT-T---TT--ATGTGA-ACTAGGTAG---AT---T-ACTTTATATCT-GT-GATTTCTAAAGAGCG-TTCCAT-TAgaaaaaaccaattctatttaat
gi|5 : taaTACATAT-TTAGTTCTGCAAAC--GCATTTTAGGTGTTCGTAAG---CAAAC-CTC-A--AATCTA--G-CTGTAT---TA---GGGGA-ACTAGGAAT---AT---A-TCCAC-TGTCA-AT-TATAGCTAAAGATAG-AG-CAT-TAAAAT---T-CTGGACTT--AGAT--TATG-AGtgtactggactaagatcatgaagcaactgaattcaattttgtat
gi|6 : aaaACTGCATAT-CAAATGTTGCAAGT--ATATTTTGTGAGTACGTCAA---CAAAC-GTC-A--AAT-TAT-G-CTGT-T---TA--TGGGGA-ATTAGGGTG---AT---T-TCCAT-TAACT-GT-AATAAGTAGGGAAAG-GT-CGT-TAAAAT---T-TTGG--TTAAAGGT--AATG-AGTGATGTTAACTCACCTATATACaaacccaaattctattatatata
gi|7 : ACTGCATAT-CAACTTTTGCAAGT--ATATTTTGGGAGTACGTCAA---CAAAC-GTC-A--AAT-TAT-G-CTGT-T---TA--TGGGAA-ATAAGGGCG---AT---T-TCCAT-TAAAT-GT-AATAAGTAGAGAAAG-AT-CGT-TAAAGC---T-TTGG--TTAAAGAT--AATG-AGTGATGTTAACTCACCTATATA
gi|8 : aCATAT-ACAATTTTGTAAAC--GCATATTGAGAGTGCGCCAA---TAAAT-ACC-T--AAT-TAT-G-CTAT-A---TA--TGGTTA-ACTAGGAAG---AT---T-TCCTC-TATCA-TT-AATCTGTAAAGAAAG-AT-CTT-TAAAGT---T-TCAG--TTAAGAAT--TGTGAAGT-CTGTTAACTCGCCTATTTA
gi|9 : aTGCGTAT-CAAATTCTGTAA------ATAGTGGGTGTACGTCAA---CAAAC-ACC-C--TAA-CAT-GGCCGT-C---TA--TGACGA-ATTATGGAG---ACG--T-CCCAT-TATAA-AT-TATGAGTAAAGAGCA-TT-CAA-TAAAGT---T-ATGG--TTAAAAAG--TATG-AAAAATGTTAA--CACCTTTAtg
6 sequences could not be aligned to this reference sequence:
Unaligned ( gi|20 ): ACCGCATAATTGTATACGTTTTTGTAAATATGGATTACTACTAATCTCAAGCTACACTGTATAAGTACTAGGTAGATTCCCGTTACGTGTATCTATAATGCACAAGGACAATGATCATTTAAATGAAAACTGCAAAATGTGGATAA
Unaligned ( gi|22 ): CAGTAAACTTCAAATCTAGCTGCTTCGGGGAGCTTAGAAGCCTTCCACTGTTAATTATTACCTAAGAGAGACCATTATTTTTATTAAGATCTTGGAAAACAAACCCTAGTTTTGTTATTCATATATCCTTTGCCGATCATTG
Unaligned ( gi|26 ): AATGTACCCCTGTCAATTATTGCTAAATGTAGAGAATTAAAATTTTGGAGTAAGATAATGAAAAACCCAATTGAATTATGTTATTCATAAATCTTTTTGTTGATAAATGTGAAAATATCACTGGTAAA
Unaligned ( gi|27 ): AAATACATTTATCATTCTGCAAGAGTATTTTAGGAGCTGAAACCCAAGCATTAAATCTTGCTGTTCTGGGTGATACCCTATATCGATTTATTGTATAGAACGAGAGATTAAGTTTAAATGAAAATAA
Unaligned ( gi|32 ): TGTGATTGCTAAAGAACTTTCCATTATGTACTGGACTAAGATCATGAAGCAAACGAATTCAATTTTGTATAAAT
Unaligned ( gi|33 ): AATTATAGCTAAAGAGAGACTGGACTAAGATCATGAAAAACCAAATTCTATTACATGTATAT
Alignments
lowQualScore : 111 1111111111 1111
lowQualScore : 22 222 1 1 55 0 000 77 5555 88888 1 1111111111 1 1 2 222 77777 1 1 333 1 33 1 1 0000 2 1 333 1 66 333 5 4
lowQualScore : .. ... . . .. . ... .. .... ..... . .......... . . . ... ..... . . ... . .. . . .... . . ... . .. ... . .
lowQualScore : 55 444 6 6 22 2 444 33 3333 99999 5 3333333333 6 6 3 777 00000 6 5 444 5 66 6 2 2222 3 5 222 8 11 333 3 4
consensus : ACTGCATAT-CAAATTTTGCAAGCGTATTTTNGGNGTACGTCAA---CAAAC-GCC-A--AAT-TAT-G-CTGT-T---TA--CGGNGA-ACTAGGGAG---AT---T-TCCAT-TATCNG-TNATNTGTAAAG-AAAG-GT-CAT-TAAAAT---T-TTGG--TTAAAAAT--AATG-AGTGATGTTAACTCACCTATATAC
Reference ( family-409 ) : ACTGCATAT-CAAATTTTGCAAGCGTATTTTNGGNGTACGTCAA---CAAAC-GCC-A--AAT-TAT-G-CTGT-T---TA--CGGNGA-ACTAGGGAG---AT---T-TCCAT-TATCNG-TNATNTGTAAAG-AAAG-GT-CAT-TAAAAT---T-TTGG--TTAAAAAT--AATG-AGTGATGTTAACTCACCTATATAC
gi|1 : ATTACACAT-AAAATTTTGCTAACATATTTTAGGTGTAAAACAG---CAAAC-TCC-G--AA--CATAG-CCGT-T---TT--AGGTGA-ACTAGGTAG---AT---T-TCCTA-TATCTG-TGATTTCTATAG-AACG-TTCCAT-TA
gi|10 : aaACTGCATATACGTTTTTTGTAAATATGTATTATGTGATTGAAAA---CAAAC-CCCCA--AAC-CAA-G---AT-C---TAAGCGGTGA-ACTAGGTAC---AC---T-CCCGT-TG-CAG-TTAACAGGAAAGGAAAT-AT-CAAATAAGAT---T-T-GG--TTGAAAAT--AATG-AAAAATGTTGATTCTCCtgtactggactaagatcataaagcaatcgaattcaattttgtataa
gi|11 : CATAT-CAAATTCTGCAGATATATATTTGGTGTACGTAAA---CAAA---CC-AGTAAT-TCT-G-CTGT-T---AA--CGGTAA-ACAAGGAAG---GT---A-TCCAT-TATCTG-TAATTGCTAAAG-AGAG-GT-AAT-TAAAAT---T-ATGG--TTGAAAAT--AAAG-AATGTTGTTAATTCAAATATAa
gi|12 : ttT-TAAATTTTGCAAGTTTCTACTTGGTGTACGTAAA---CAAAC-CTC-T--AAT-GTT-G-CTGT-T---TA--CGTTGA-ATTAGGAAG---GT---A-TCCAT-TATCTG-TAATTTCT-ACG-AGAG-GT-CAT-TAAAAT---T-CCGG--TTGGAAAT--GAAG-AATTATGTTAATTCATCTATATA
gi|13 : cTACATAT-AAAATTTTGTAAACGCATATTGGGAGTGTGCTTA---CAAAC-ACC-T--AAT-TAT-G-CTGT-A---TA--CGGCGA-ATTAGGGAT---AT---T-TCCTT-TATCAT-TAATTTGTAAAG-AAAG-AT-CTT-TAAAAT---T-TTGA--TTAAAAAT--TATGAAGT-CCGTTAACTCGCCTAta
gi|14 : CACAT-AAAATTTTGCAAACATATT----------AACAG---CAAAC-TCC-G--AAC-AAA-G-CCGT-T---TT--CGGTGA-ACTAGGTAG---AT---T-TCCTA-TATCTG-TGATTTCTAAAG-AACG-TTCCAT-TA
gi|15 : aaataaTTTTGTAAACGCATTTTCAGAGTGCGCCAA---CAAACAGC-------T-TAT-G-CTGT-A---TA--TGAGGA-ATGAGGACGGTAAT---T-TGTAT-TAT----TAATATGCAAAG-AAAT-GT-TTT-TAAAATAAATGTTGA--TTAAAAAtgtactggactaagatcatgaagcaaccaaattcaattttgcat
gi|16 : atcacaaataattatACTGCATAT-CAAATTTTGCAAGGATATTTTGGGAG-------------AAC-ATC-A--AAT-TAT-G-CTGC-T---TA--CGGGGA-ATTAGGGCG---AT---T-TCCAT-TAACTG-TAATAAGTAGTG-AAAG-GT-CGT-TAAAAT---T-TTGG--TTAAAGAT--AATG-AGTGATGTTAACTCACCTATATACgttttaattcctttatat
gi|17 : aACTGCATAC-CAAAT------AG----TTTTTAAAATACGTCAA---CAAAC-TTC-A--AAT-CAT-G-CCGT-C---TA--CTGGGA-AATAGGGCC---AT---T-TCTAT-TAACTA-TAATAAGTAAGG-AAAG-AT-CCT-TAAAAT---T-TTGG--TTAAAGTT--ATTG-ATTAATGTTAACTCACCT
gi|18 : aaATGT-CATATTAAGCAAACGTATCTTAGATGTGTAACCA---CAAAC-TCC-T--AACGTA--G-CTGTAT---TA---GGTGA-ACTAGGGAG---AT---T-TCCAT-AATCTG-TTATCTGTAAAC-AAtttta
gi|19 : aaATTACATAT-TAAATTCTGTAAATACATATTGGGTGTACGTCAA---CAAAC-ACC-T--AA--CATGG-CCGT-A---TA--TGCCGA-ATTAGGGAG---AC---T-ACCAT-TATCA------ATGCAAA-------GT-C-T-CCAAAT---T-TTGG--cgtgcaataagctatatgagttatgaaaagaaccaattctattta
gi|2 : gttgataaTCAG---CCAAC-ATC-A--AATCTA--G-CTGTAT---TA---GTGGA-ACTATGAAG---ATAATTATCCAC-TGTCAA-TTATAGCTAAAG-AGAG-AG-CAT-TAAAAT---T-CTGGA-TTAAGAaagtgctttgttaaacaaaaaaa
gi|21 : TACATGT-AAAATTGTGTAAGCGTATTTTAGGGGTA----AAACTCAAAC-ACC-A--ACT-CTT-G-CTGT-TCTCT---CTGCGA-TTTAGGCGG---AT---A-TCCTT-TATCGA-GTATTTGTAAAG-AACG-AA-CAA-ATAAAT---T-TTGG--ATGAAAATCAAATG-ttttgataagcccaaattctattatatatagatcttttattgatcaatgcgaatctatcactggtaaa
gi|23 : aaaTATTTTAGGTGTAAAACAG---CAAAT-TCC-G--AACATA--G-CCGT-T---TT--AGGCGA-ACTAGGTAG---AT---T-TCCTT-TATCTG-TGATTTCTAAAG-AGCG-CTCCAT-TA
gi|24 : TACATGT-AAAATTCTGCAAGCGTATTTTAGGGAT---TTAATTTCAAAC-ACC-T--AAT-CTT-G-CTGTGC---TG--T-GTGA-TCAAGGCAG---AT---A-GCCTT-TATCGA-TTATTTGTAAAG-AACGAGC-GAT-T-AAAT---T-TTAG--ATAAAAAtgtactggactaatatcatgaagcaaccgaattcaattttgtataa
gi|25 : aaaTACATGT-AAAATCATGTAAACGTATTTTAGGAGT---TAAAACTCAAAC-ACA-T--AAT-CCC-A-CTGTGT---TG--TG-TGATACC-GGAAG---AT---T-TCCTT-TATCGA-TTAGTTGTAAAG-AACGAGC-GAT-T-AAAT---T-TTGG--ATAATAAT--gca
gi|27 : aaTAT-CA--TTCTGCAAGAGTATTTTAGGAGC---TGAAACCCAAGC-ATT-A--AAT-CTT-G-CTGT-T---------------CT-GGGTG---AT---A-CCCTA-TATCGATTTAT-TGTATAG-AACGAGA-GAT-TAAG-----T-TTAA--ATGAAAAT--AAc
gi|28 : aaatacattACTGCATAT-CAAATTTTGCAAGTATATTTTTTGAGTACATAAA---CAAAT-GTC-A--AAT-CAT-G-CTGT-T---TA--TGGGGA-ATTAGGATG---AT---T-TCCAT-TAACTG-TAAT
gi|29 : aaACTGCATAT-CAAATTTTGCAAGTATATTTTTGTAGTACGTCAA---CGAAC-GTC-A--AAT-TAT-G-TTGT-T---TA--AGGaacagacatgtgaactctc
gi|29 : aaAAG-GT-C-T-TAAAAT---T-ATGT--TTAAAAAT--AATG-AGTGATGTTAACTCACCTATtcttaaaattatgtttaaaaataatgagtgatgttaactcacctat
gi|3 : aaactgcatatcaaattttgcaagtatatttttgtagtacgtcaacgaacgtcaaattatgttgtttTCAG---CCAAC-ATC-A--AATCTA--G-CTGTAT---TA---GTGGA-ACTATGAAG---ATAATTATCCAC-TGTCAA-TTATAGCTAAAG-AGAG-AG-CAT-TAAAAT---T-CTGGA-TTAAGA
gi|30 : ACTGCATAT-CAAATTTTGCAAGTATATTTTTGTAGTACGTCAA---CGAAC-GTC-A--AAT-TAT-G-TTGT-T---TA--AGGttttgataagcccaaattctattatatatagatcttttattgatcaatgcgaatctatcactggtaaa
gi|30 : aaAAG-GT-C-T-TAAAAT---T-ATGT--TTAAAAAT--AATG-AGTGATGTTAACTCACCTATtcttaaaattatgtttaaaaataatgagtgatgttaactcacctat
gi|31 : aaactgcatatcaaattttgcaagtatatttttgtagtacgtcaacgaacgtcaaattatgttgtttTAGGGAG---AT---T-TCCAT-TATCTG-TTATCTGTAAAC-AACGTGC-TA--TAAGCT---A-TTGG--ACAAAAGT--TATG-
gi|4 : ATTACACAT-ACAATTTTGCAAACATATTTAAGGTGTAAAACAG---CAATT-TCC-G--AAC-TTT-G-CCGT-T---TT--ATGTGA-ACTAGGTAG---AT---T-ACTTTATATCTG-TGATTTCTAAAG-AGCG-TTCCAT-TAgaaaaaaccaattctatttaat
gi|5 : taaTACATAT-TTAGTTCTGCAAACGCATTTTAGGTGTTCGTAAG---CAAAC-CTC-A--AATCTA--G-CTGTAT---TA---GGGGA-ACTAGGAAT---AT---A-TCCAC-TGTCAA-TTATAGCTAAAG-ATAG-AG-CAT-TAAAAT---T-CTGGACTT--AGAT--TATG-AGtgtactggactaagatcatgaagcaactgaattcaattttgtat
gi|6 : aaaACTGCATAT-CAAATGTTGCAAGTATATTTTGTGAGTACGTCAA---CAAAC-GTC-A--AAT-TAT-G-CTGT-T---TA--TGGGGA-ATTAGGGTG---AT---T-TCCAT-TAACTG-TAATAAGTAGGG-AAAG-GT-CGT-TAAAAT---T-TTGG--TTAAAGGT--AATG-AGTGATGTTAACTCACCTATATACaaacccaaattctattatatata
gi|7 : ACTGCATAT-CAACTTTTGCAAGTATATTTTGGGAGTACGTCAA---CAAAC-GTC-A--AAT-TAT-G-CTGT-T---TA--TGGGAA-ATAAGGGCG---AT---T-TCCAT-TAAATG-TAATAAGTAGAG-AAAG-AT-CGT-TAAAGC---T-TTGG--TTAAAGAT--AATG-AGTGATGTTAACTCACCTATATA
gi|8 : aCATAT-ACAATTTTGTAAACGCATATTGAGAGTGCGCCAA---TAAAT-ACC-T--AAT-TAT-G-CTAT-A---TA--TGGTTA-ACTAGGAAG---AT---T-TCCTC-TATCAT-TAATCTGTAAAG-AAAG-AT-CTT-TAAAGT---T-TCAG--TTAAGAAT--TGTGAAGT-CTGTTAACTCGCCTATTTA
gi|9 : aTGCGTAT-CAAATTCTGTAA----ATAGTGGGTGTACGTCAA---CAAAC-ACC-C--TAA-CAT-GGCCGT-C---TA--TGACGA-ATTATGGAG---ACG--T-CCCAT-TATAAA-TTATGAGTAAAG-AGCA-TT-CAA-TAAAGT---T-ATGG--TTAAAAAG--TATG-AAAAATGTTAA--CACCTTTAtg
5 sequences could not be aligned to this reference sequence:
Unaligned ( gi|20 ): ACCGCATAATTGTATACGTTTTTGTAAATATGGATTACTACTAATCTCAAGCTACACTGTATAAGTACTAGGTAGATTCCCGTTACGTGTATCTATAATGCACAAGGACAATGATCATTTAAATGAAAACTGCAAAATGTGGATAA
Unaligned ( gi|22 ): CAGTAAACTTCAAATCTAGCTGCTTCGGGGAGCTTAGAAGCCTTCCACTGTTAATTATTACCTAAGAGAGACCATTATTTTTATTAAGATCTTGGAAAACAAACCCTAGTTTTGTTATTCATATATCCTTTGCCGATCATTG
Unaligned ( gi|26 ): AATGTACCCCTGTCAATTATTGCTAAATGTAGAGAATTAAAATTTTGGAGTAAGATAATGAAAAACCCAATTGAATTATGTTATTCATAAATCTTTTTGTTGATAAATGTGAAAATATCACTGGTAAA
Unaligned ( gi|32 ): TGTGATTGCTAAAGAACTTTCCATTATGTACTGGACTAAGATCATGAAGCAAACGAATTCAATTTTGTATAAAT
Unaligned ( gi|33 ): AATTATAGCTAAAGAGAGACTGGACTAAGATCATGAAAAACCAAATTCTATTACATGTATAT
Alignments
lowQualScore : 111 1111111111 1111
lowQualScore : 22 222 1 1 55 0 000 77 5555 88888 1 1111111111 1 1 2 222 77777 1 1 333 1 33 1 1 0000 2 1 333 1 66 333 5 4
lowQualScore : .. ... . . .. . ... .. .... ..... . .......... . . . ... ..... . . ... . .. . . .... . . ... . .. ... . .
lowQualScore : 55 444 6 6 22 2 444 33 3333 99999 5 3333333333 6 6 3 777 00000 6 5 444 5 66 6 2 2222 3 5 222 8 11 333 3 4
consensus : ACTGCATAT-CAAATTTTGCAAGCGTATTTTNGGNGTACGTCAA---CAAAC-GCC-A--AAT-TAT-G-CTGT-T---TA--CGGNGA-ACTAGGGAG---AT---T-TCCAT-TATCNG-TNATNTGTAAAG-AAAG-GT-CAT-TAAAAT---T-TTGG--TTAAAAAT--AATG-AGTGATGTTAACTCACCTATATAC
Reference ( family-409 ) : ACTGCATAT-CAAATTTTGCAAGCGTATTTTNGGNGTACGTCAA---CAAAC-GCC-A--AAT-TAT-G-CTGT-T---TA--CGGNGA-ACTAGGGAG---AT---T-TCCAT-TATCNG-TNATNTGTAAAG-AAAG-GT-CAT-TAAAAT---T-TTGG--TTAAAAAT--AATG-AGTGATGTTAACTCACCTATATAC
gi|1 : ATTACACAT-AAAATTTTGCTAACATATTTTAGGTGTAAAACAG---CAAAC-TCC-G--AA--CATAG-CCGT-T---TT--AGGTGA-ACTAGGTAG---AT---T-TCCTA-TATCTG-TGATTTCTATAG-AACG-TTCCAT-TA
gi|10 : aaACTGCATATACGTTTTTTGTAAATATGTATTATGTGATTGAAAA---CAAAC-CCCCA--AAC-CAA-G---AT-C---TAAGCGGTGA-ACTAGGTAC---AC---T-CCCGT-TG-CAG-TTAACAGGAAAGGAAAT-AT-CAAATAAGAT---T-T-GG--TTGAAAAT--AATG-AAAAATGTTGATTCTCCtgtactggactaagatcataaagcaatcgaattcaattttgtataa
gi|11 : CATAT-CAAATTCTGCAGATATATATTTGGTGTACGTAAA---CAAA---CC-AGTAAT-TCT-G-CTGT-T---AA--CGGTAA-ACAAGGAAG---GT---A-TCCAT-TATCTG-TAATTGCTAAAG-AGAG-GT-AAT-TAAAAT---T-ATGG--TTGAAAAT--AAAG-AATGTTGTTAATTCAAATATAa
gi|12 : ttT-TAAATTTTGCAAGTTTCTACTTGGTGTACGTAAA---CAAAC-CTC-T--AAT-GTT-G-CTGT-T---TA--CGTTGA-ATTAGGAAG---GT---A-TCCAT-TATCTG-TAATTTCT-ACG-AGAG-GT-CAT-TAAAAT---T-CCGG--TTGGAAAT--GAAG-AATTATGTTAATTCATCTATATA
gi|13 : cTACATAT-AAAATTTTGTAAACGCATATTGGGAGTGTGCTTA---CAAAC-ACC-T--AAT-TAT-G-CTGT-A---TA--CGGCGA-ATTAGGGAT---AT---T-TCCTT-TATCAT-TAATTTGTAAAG-AAAG-AT-CTT-TAAAAT---T-TTGA--TTAAAAAT--TATGAAGT-CCGTTAACTCGCCTAta
gi|14 : CACAT-AAAATTTTGCAAACATATT----------AACAG---CAAAC-TCC-G--AAC-AAA-G-CCGT-T---TT--CGGTGA-ACTAGGTAG---AT---T-TCCTA-TATCTG-TGATTTCTAAAG-AACG-TTCCAT-TA
gi|15 : aaataaTTTTGTAAACGCATTTTCAGAGTGCGCCAA---CAAACAGC-------T-TAT-G-CTGT-A---TA--TGAGGA-ATGAGGACGGTAAT---T-TGTAT-TAT----TAATATGCAAAG-AAAT-GT-TTT-TAAAATAAATGTTGA--TTAAAAAtgtactggactaagatcatgaagcaaccaaattcaattttgcat
gi|16 : atcacaaataattatACTGCATAT-CAAATTTTGCAAGGATATTTTGGGAG-------------AAC-ATC-A--AAT-TAT-G-CTGC-T---TA--CGGGGA-ATTAGGGCG---AT---T-TCCAT-TAACTG-TAATAAGTAGTG-AAAG-GT-CGT-TAAAAT---T-TTGG--TTAAAGAT--AATG-AGTGATGTTAACTCACCTATATACgttttaattcctttatat
gi|17 : aACTGCATAC-CAAAT------AG----TTTTTAAAATACGTCAA---CAAAC-TTC-A--AAT-CAT-G-CCGT-C---TA--CTGGGA-AATAGGGCC---AT---T-TCTAT-TAACTA-TAATAAGTAAGG-AAAG-AT-CCT-TAAAAT---T-TTGG--TTAAAGTT--ATTG-ATTAATGTTAACTCACCT
gi|18 : aaATGT-CATATTAAGCAAACGTATCTTAGATGTGTAACCA---CAAAC-TCC-T--AACGTA--G-CTGTAT---TA---GGTGA-ACTAGGGAG---AT---T-TCCAT-AATCTG-TTATCTGTAAAC-AAtttta
gi|19 : aaATTACATAT-TAAATTCTGTAAATACATATTGGGTGTACGTCAA---CAAAC-ACC-T--AA--CATGG-CCGT-A---TA--TGCCGA-ATTAGGGAG---AC---T-ACCAT-TATCA------ATGCAAA-------GT-C-T-CCAAAT---T-TTGG--cgtgcaataagctatatgagttatgaaaagaaccaattctattta
gi|2 : gttgataaTCAG---CCAAC-ATC-A--AATCTA--G-CTGTAT---TA---GTGGA-ACTATGAAG---ATAATTATCCAC-TGTCAA-TTATAGCTAAAG-AGAG-AG-CAT-TAAAAT---T-CTGGA-TTAAGAaagtgctttgttaaacaaaaaaa
gi|21 : TACATGT-AAAATTGTGTAAGCGTATTTTAGGGGTA----AAACTCAAAC-ACC-A--ACT-CTT-G-CTGT-TCTCT---CTGCGA-TTTAGGCGG---AT---A-TCCTT-TATCGA-GTATTTGTAAAG-AACG-AA-CAA-ATAAAT---T-TTGG--ATGAAAATCAAATG-ttttgataagcccaaattctattatatatagatcttttattgatcaatgcgaatctatcactggtaaa
gi|23 : aaaTATTTTAGGTGTAAAACAG---CAAAT-TCC-G--AACATA--G-CCGT-T---TT--AGGCGA-ACTAGGTAG---AT---T-TCCTT-TATCTG-TGATTTCTAAAG-AGCG-CTCCAT-TA
gi|24 : TACATGT-AAAATTCTGCAAGCGTATTTTAGGGAT---TTAATTTCAAAC-ACC-T--AAT-CTT-G-CTGTGC---TG--T-GTGA-TCAAGGCAG---AT---A-GCCTT-TATCGA-TTATTTGTAAAG-AACGAGC-GAT-T-AAAT---T-TTAG--ATAAAAAtgtactggactaatatcatgaagcaaccgaattcaattttgtataa
gi|25 : aaaTACATGT-AAAATCATGTAAACGTATTTTAGGAGT---TAAAACTCAAAC-ACA-T--AAT-CCC-A-CTGTGT---TG--TG-TGATACC-GGAAG---AT---T-TCCTT-TATCGA-TTAGTTGTAAAG-AACGAGC-GAT-T-AAAT---T-TTGG--ATAATAAT--gca
gi|27 : aaTAT-CA--TTCTGCAAGAGTATTTTAGGAGC---TGAAACCCAAGC-ATT-A--AAT-CTT-G-CTGT-T---------------CT-GGGTG---AT---A-CCCTA-TATCGATTTAT-TGTATAG-AACGAGA-GAT-TAAG-----T-TTAA--ATGAAAAT--AAc
gi|28 : aaatacattACTGCATAT-CAAATTTTGCAAGTATATTTTTTGAGTACATAAA---CAAAT-GTC-A--AAT-CAT-G-CTGT-T---TA--TGGGGA-ATTAGGATG---AT---T-TCCAT-TAACTG-TAAT
gi|29 : aaACTGCATAT-CAAATTTTGCAAGTATATTTTTGTAGTACGTCAA---CGAAC-GTC-A--AAT-TAT-G-TTGT-T---TA--AGGaacagacatgtgaactctc
gi|29 : aaAAG-GT-C-T-TAAAAT---T-ATGT--TTAAAAAT--AATG-AGTGATGTTAACTCACCTATtcttaaaattatgtttaaaaataatgagtgatgttaactcacctat
gi|3 : aaactgcatatcaaattttgcaagtatatttttgtagtacgtcaacgaacgtcaaattatgttgtttTCAG---CCAAC-ATC-A--AATCTA--G-CTGTAT---TA---GTGGA-ACTATGAAG---ATAATTATCCAC-TGTCAA-TTATAGCTAAAG-AGAG-AG-CAT-TAAAAT---T-CTGGA-TTAAGA
gi|30 : ACTGCATAT-CAAATTTTGCAAGTATATTTTTGTAGTACGTCAA---CGAAC-GTC-A--AAT-TAT-G-TTGT-T---TA--AGGttttgataagcccaaattctattatatatagatcttttattgatcaatgcgaatctatcactggtaaa
gi|30 : aaAAG-GT-C-T-TAAAAT---T-ATGT--TTAAAAAT--AATG-AGTGATGTTAACTCACCTATtcttaaaattatgtttaaaaataatgagtgatgttaactcacctat
gi|31 : aaactgcatatcaaattttgcaagtatatttttgtagtacgtcaacgaacgtcaaattatgttgtttTAGGGAG---AT---T-TCCAT-TATCTG-TTATCTGTAAAC-AACGTGC-TA--TAAGCT---A-TTGG--ACAAAAGT--TATG-
gi|4 : ATTACACAT-ACAATTTTGCAAACATATTTAAGGTGTAAAACAG---CAATT-TCC-G--AAC-TTT-G-CCGT-T---TT--ATGTGA-ACTAGGTAG---AT---T-ACTTTATATCTG-TGATTTCTAAAG-AGCG-TTCCAT-TAgaaaaaaccaattctatttaat
gi|5 : taaTACATAT-TTAGTTCTGCAAACGCATTTTAGGTGTTCGTAAG---CAAAC-CTC-A--AATCTA--G-CTGTAT---TA---GGGGA-ACTAGGAAT---AT---A-TCCAC-TGTCAA-TTATAGCTAAAG-ATAG-AG-CAT-TAAAAT---T-CTGGACTT--AGAT--TATG-AGtgtactggactaagatcatgaagcaactgaattcaattttgtat
gi|6 : aaaACTGCATAT-CAAATGTTGCAAGTATATTTTGTGAGTACGTCAA---CAAAC-GTC-A--AAT-TAT-G-CTGT-T---TA--TGGGGA-ATTAGGGTG---AT---T-TCCAT-TAACTG-TAATAAGTAGGG-AAAG-GT-CGT-TAAAAT---T-TTGG--TTAAAGGT--AATG-AGTGATGTTAACTCACCTATATACaaacccaaattctattatatata
gi|7 : ACTGCATAT-CAACTTTTGCAAGTATATTTTGGGAGTACGTCAA---CAAAC-GTC-A--AAT-TAT-G-CTGT-T---TA--TGGGAA-ATAAGGGCG---AT---T-TCCAT-TAAATG-TAATAAGTAGAG-AAAG-AT-CGT-TAAAGC---T-TTGG--TTAAAGAT--AATG-AGTGATGTTAACTCACCTATATA
gi|8 : aCATAT-ACAATTTTGTAAACGCATATTGAGAGTGCGCCAA---TAAAT-ACC-T--AAT-TAT-G-CTAT-A---TA--TGGTTA-ACTAGGAAG---AT---T-TCCTC-TATCAT-TAATCTGTAAAG-AAAG-AT-CTT-TAAAGT---T-TCAG--TTAAGAAT--TGTGAAGT-CTGTTAACTCGCCTATTTA
gi|9 : aTGCGTAT-CAAATTCTGTAA----ATAGTGGGTGTACGTCAA---CAAAC-ACC-C--TAA-CAT-GGCCGT-C---TA--TGACGA-ATTATGGAG---ACG--T-CCCAT-TATAAA-TTATGAGTAAAG-AGCA-TT-CAA-TAAAGT---T-ATGG--TTAAAAAG--TATG-AAAAATGTTAA--CACCTTTAtg
blockSeqs : AC ATA A T TT ACT AG AGT CATG G CTAAGC T T T GTA AATTA G A GAT T CA G A TTC A A AAA G AC CAA A G
blockSeqs : C ATA T T AC TTT C CA CAA . TCTCTC T . A . AATTA A . AG A TG . A CTC A . . . A A A T
blockSeqs : T GTT T T AC ACT C T TCT . GCTGT T . A . GT A . TG A TT . A AGC A . . . A G . G
blockSeqs : A ACG G A GT ACC A T GTT . GTTGT C . G . T T . TG A TT . A AGC T . . . . T . A
blockSeqs : A ACA C A GC . T G TAT . TAAC T . T . A T . AT G TT . C AGA A . . . . A . G
blockSeqs : C ACG G A AC . A A AAA . TTAC G . A . A A . TG A AT . A TGC T . . . . A . G
blockSeqs : C GGA T A GT . T A TAT . ATAC G . G . T A . TG A AA . A TTC G . . . . A . G
blockSeqs : C ACG A T AC . T T TAT . TTTC G . G . T A . TA A AA . A AT C . . . . A . G
blockSeqs : T ATA G T AA . A T CAT . ATAT T . G . T A . TG T CT . A GT A . . . . A . A
blockSeqs : A GCG A G AC . A A GTA . TTAC C . G . T A . AA T AT . C GT A . . . . T . .
blockSeqs : A GCG A T AC . A A CTA . CTAC G . A . T A . GA T AG . C AT A . . . . T . .
blockSeqs : A ACG A G AC . T G CTT . ATTA C . C . T T . TG G TT . C GT A . . . . A .
blockSeqs : C GAG A A AA . A T ATA . ATAT C . T . T T . GA T TT . C GT A . . . . A .
blockSeqs : C GTA A A TC . A T CTT . ATTA T . C . A T . GA T TT . C AT A . . . . T .
blockSeqs : C GTA T A AC . A A CCC . TTTA T . A . T T . TG T TT . A GT A . . . . T
blockSeqs : C GTA T A AC . G A CTT . TTAT G . G . A T . AA A AG . A AG A . . . .
blockSeqs : A ACA T A GC . G A CAT . TTAA G . A . T A . TG T CT . A AA A . . . .
blockSeqs : T ACG A T AC . A A TAT . ATTA T . A . A A . TG T TT . C GT A . . . .
blockSeqs : C GTA A T A . G A CTA . TTAA G . G . T A . AA G AG . C AG G . . . .
blockSeqs : C GTA G A . . T G TAT . TTTA G . T . T T . TG T AA . A GT G . . . .
blockSeqs : A ACG G A . . C A TTT . ATTA G . A . T A . TG A AA . A AG T . . . .
blockSeqs : C G G A . . G A CTA . TTAT T . G . A A . AT A CT . A GT A .
blockSeqs : . G T . . G A TAT . TTAT C . G . T A . AA A GA . A AT . .
blockSeqs : . . . . A T TAT . ATAT . . A . T T . A T T . C AT . .
blockSeqs : . A C TAT . CTAT G . T A . . . . TT . .
blockSeqs : . . . CAT . T
blockSeqCons : CNT** GT**
originalCons : ACTGCATAT-CAAATTTTGCAAGCGTATTTTNGGNGTACGTCAA---CAAAC-GCC-A--AAT-TAT-G-CTGT-T---TA--CGGNGA-ACTAGGGAG---AT---T-TCCAT-TATCNG-TNATNTGTAAAG-AAAG-GT-CAT-TAAAAT---T-TTGG--TTAAAAAT--AATG-AGTGATGTTAACTCACCTATATAC
finalCons : ACTGCATAT-CAAATTTTGCAAGCGTATTTTNGGNGTACGTCAA---CAAAC-GCC-A--AATCNT--G-CTGT-T---TA--CGGNGA-ACTAGGGAG---AT---T-TCCAT-TATCNG-TNATNTGTAAAG-AAAGGT--CAT-TAAAAT---T-TTGG--TTAAAAAT--AATG-AGTGATGTTAACTCACCTATATAC
5 sequences could not be aligned to this reference sequence:
Unaligned ( gi|20 ): ACCGCATAATTGTATACGTTTTTGTAAATATGGATTACTACTAATCTCAAGCTACACTGTATAAGTACTAGGTAGATTCCCGTTACGTGTATCTATAATGCACAAGGACAATGATCATTTAAATGAAAACTGCAAAATGTGGATAA
Unaligned ( gi|22 ): CAGTAAACTTCAAATCTAGCTGCTTCGGGGAGCTTAGAAGCCTTCCACTGTTAATTATTACCTAAGAGAGACCATTATTTTTATTAAGATCTTGGAAAACAAACCCTAGTTTTGTTATTCATATATCCTTTGCCGATCATTG
Unaligned ( gi|26 ): AATGTACCCCTGTCAATTATTGCTAAATGTAGAGAATTAAAATTTTGGAGTAAGATAATGAAAAACCCAATTGAATTATGTTATTCATAAATCTTTTTGTTGATAAATGTGAAAATATCACTGGTAAA
Unaligned ( gi|32 ): TGTGATTGCTAAAGAACTTTCCATTATGTACTGGACTAAGATCATGAAGCAAACGAATTCAATTTTGTATAAAT
Unaligned ( gi|33 ): AATTATAGCTAAAGAGAGACTGGACTAAGATCATGAAAAACCAAATTCTATTACATGTATAT
Alignments
lowQualScore : 111 1111111111 1111
lowQualScore : 22 222 1 1 55 0 000 77 5555 0 1 5 1 1111111111 1 1 2 222 77777 1 1 333 1 33 1 1 0000 2 1 333 1 66 333 5 4
lowQualScore : .. ... . . .. . ... .. .... . . . . .......... . . . ... ..... . . ... . .. . . .... . . ... . .. ... . .
lowQualScore : 55 444 6 6 22 2 444 33 3333 9 0 9 5 3333333333 6 6 3 777 00000 6 5 444 5 66 6 2 2222 3 5 222 8 11 333 3 4
consensus : ACTGCATAT-CAAATTTTGCAAGCGTATTTTNGGNGTACGTCAA---CAAAC-GCC-A--AATCAT-G-CTGT-T---TA--CGGNGA-ACTAGGGAG---AT---T-TCCAT-TATCNG-TNATNTGTAAAG-AAAG-GT-CAT-TAAAAT---T-TTGG--TTAAAAAT--AATG-AGTGATGTTAACTCACCTATATAC
Reference ( family-409 ) : ACTGCATAT-CAAATTTTGCAAGCGTATTTTNGGNGTACGTCAA---CAAAC-GCC-A--AATCNT-G-CTGT-T---TA--CGGNGA-ACTAGGGAG---AT---T-TCCAT-TATCNG-TNATNTGTAAAG-AAAG-GT-CAT-TAAAAT---T-TTGG--TTAAAAAT--AATG-AGTGATGTTAACTCACCTATATAC
gi|1 : ATTACACAT-AAAATTTTGCTAACATATTTTAGGTGTAAAACAG---CAAAC-TCC-G--AA-CATAG-CCGT-T---TT--AGGTGA-ACTAGGTAG---AT---T-TCCTA-TATCTG-TGATTTCTATAG-AACG-TTCCAT-TA
gi|10 : aaACTGCATATACGTTTTTTGTAAATATGTATTATGTGATTGAAAA---CAAAC-CCCCA--AACCAA-G---AT-C---TAAGCGGTGA-ACTAGGTAC---AC---T-CCCGT-TG-CAG-TTAACAGGAAAGGAAAT-AT-CAAATAAGAT---T-T-GG--TTGAAAAT--AATG-AAAAATGTTGATTCTCCtgtactggactaagatcataaagcaatcgaattcaattttgtataa
gi|11 : CATAT-CAAATTCTGCAGATATATATTTGGTGTACGTAAA---CAAA---CC-AGTAATTCT-G-CTGT-T---AA--CGGTAA-ACAAGGAAG---GT---A-TCCAT-TATCTG-TAATTGCTAAAG-AGAG-GT-AAT-TAAAAT---T-ATGG--TTGAAAAT--AAAG-AATGTTGTTAATTCAAATATAa
gi|12 : ttT-TAAATTTTGCAAGTTTCTACTTGGTGTACGTAAA---CAAAC-CTC-T--AATGTT-G-CTGT-T---TA--CGTTGA-ATTAGGAAG---GT---A-TCCAT-TATCTG-TAATTTCT-ACG-AGAG-GT-CAT-TAAAAT---T-CCGG--TTGGAAAT--GAAG-AATTATGTTAATTCATCTATATA
gi|13 : cTACATAT-AAAATTTTGTAAACGCATATTGGGAGTGTGCTTA---CAAAC-ACC-T--AATTAT-G-CTGT-A---TA--CGGCGA-ATTAGGGAT---AT---T-TCCTT-TATCAT-TAATTTGTAAAG-AAAG-AT-CTT-TAAAAT---T-TTGA--TTAAAAAT--TATGAAGT-CCGTTAACTCGCCTAta
gi|14 : CACAT-AAAATTTTGCAAACATATT----------AACAG---CAAAC-TCC-G--AACAAA-G-CCGT-T---TT--CGGTGA-ACTAGGTAG---AT---T-TCCTA-TATCTG-TGATTTCTAAAG-AACG-TTCCAT-TA
gi|15 : aaataaTTTTGTAAACGCATTTTCAGAGTGCGCCAA---CAAACAGC-------TTAT-G-CTGT-A---TA--TGAGGA-ATGAGGACGGTAAT---T-TGTAT-TAT----TAATATGCAAAG-AAAT-GT-TTT-TAAAATAAATGTTGA--TTAAAAAtgtactggactaagatcatgaagcaaccaaattcaattttgcat
gi|16 : atcacaaataattatACTGCATAT-CAAATTTTGCAAGGATATTTTGGGAG-------------AAC-ATC-A--AATTAT-G-CTGC-T---TA--CGGGGA-ATTAGGGCG---AT---T-TCCAT-TAACTG-TAATAAGTAGTG-AAAG-GT-CGT-TAAAAT---T-TTGG--TTAAAGAT--AATG-AGTGATGTTAACTCACCTATATACgttttaattcctttatat
gi|17 : aACTGCATAC-CAAAT------AG----TTTTTAAAATACGTCAA---CAAAC-TTC-A--AATCAT-G-CCGT-C---TA--CTGGGA-AATAGGGCC---AT---T-TCTAT-TAACTA-TAATAAGTAAGG-AAAG-AT-CCT-TAAAAT---T-TTGG--TTAAAGTT--ATTG-ATTAATGTTAACTCACCT
gi|18 : aaATGT-CATATTAAGCAAACGTATCTTAGATGTGTAACCA---CAAAC-TCC-T--AA-CGTAG-CTGTAT---TA---GGTGA-ACTAGGGAG---AT---T-TCCAT-AATCTG-TTATCTGTAAAC-AAtttta
gi|19 : aaATTACATAT-TAAATTCTGTAAATACATATTGGGTGTACGTCAA---CAAAC-ACC-T--AA-CATGG-CCGT-A---TA--TGCCGA-ATTAGGGAG---AC---T-ACCAT-TATCA------ATGCAAA-------GT-C-T-CCAAAT---T-TTGG--cgtgcaataagctatatgagttatgaaaagaaccaattctattta
gi|2 : gttgataaTCAG---CCAAC-ATC-A--AATCTA-G-CTGTAT---TA---GTGGA-ACTATGAAG---ATAATTATCCAC-TGTCAA-TTATAGCTAAAG-AGAG-AG-CAT-TAAAAT---T-CTGGA-TTAAGAaagtgctttgttaaacaaaaaaa
gi|21 : TACATGT-AAAATTGTGTAAGCGTATTTTAGGGGTA----AAACTCAAAC-ACC-A--ACTCTT-G-CTGT-TCTCT---CTGCGA-TTTAGGCGG---AT---A-TCCTT-TATCGA-GTATTTGTAAAG-AACG-AA-CAA-ATAAAT---T-TTGG--ATGAAAATCAAATG-ttttgataagcccaaattctattatatatagatcttttattgatcaatgcgaatctatcactggtaaa
gi|23 : aaaTATTTTAGGTGTAAAACAG---CAAAT-TCC-G--AA-CATAG-CCGT-T---TT--AGGCGA-ACTAGGTAG---AT---T-TCCTT-TATCTG-TGATTTCTAAAG-AGCG-CTCCAT-TA
gi|24 : TACATGT-AAAATTCTGCAAGCGTATTTTAGGGAT---TTAATTTCAAAC-ACC-T--AATCTT-G-CTGTGC---TG--T-GTGA-TCAAGGCAG---AT---A-GCCTT-TATCGA-TTATTTGTAAAG-AACGAGC-GAT-T-AAAT---T-TTAG--ATAAAAAtgtactggactaatatcatgaagcaaccgaattcaattttgtataa
gi|25 : aaaTACATGT-AAAATCATGTAAACGTATTTTAGGAGT---TAAAACTCAAAC-ACA-T--AATCCC-A-CTGTGT---TG--TG-TGATACC-GGAAG---AT---T-TCCTT-TATCGA-TTAGTTGTAAAG-AACGAGC-GAT-T-AAAT---T-TTGG--ATAATAAT--gca
gi|27 : aaTAT-CA--TTCTGCAAGAGTATTTTAGGAGC---TGAAACCCAAGC-ATT-A--AATCTT-G-CTGT-T---------------CT-GGGTG---AT---A-CCCTA-TATCGATTTAT-TGTATAG-AACGAGA-GAT-TAAG-----T-TTAA--ATGAAAAT--AAc
gi|28 : aaatacattACTGCATAT-CAAATTTTGCAAGTATATTTTTTGAGTACATAAA---CAAAT-GTC-A--AATCAT-G-CTGT-T---TA--TGGGGA-ATTAGGATG---AT---T-TCCAT-TAACTG-TAAT
gi|29 : aaACTGCATAT-CAAATTTTGCAAGTATATTTTTGTAGTACGTCAA---CGAAC-GTC-A--AATTAT-G-TTGT-T---TA--AGGaacagacatgtgaactctc
gi|29 : aaAAG-GT-C-T-TAAAAT---T-ATGT--TTAAAAAT--AATG-AGTGATGTTAACTCACCTATtcttaaaattatgtttaaaaataatgagtgatgttaactcacctat
gi|3 : aaactgcatatcaaattttgcaagtatatttttgtagtacgtcaacgaacgtcaaattatgttgtttTCAG---CCAAC-ATC-A--AATCTA-G-CTGTAT---TA---GTGGA-ACTATGAAG---ATAATTATCCAC-TGTCAA-TTATAGCTAAAG-AGAG-AG-CAT-TAAAAT---T-CTGGA-TTAAGA
gi|30 : ACTGCATAT-CAAATTTTGCAAGTATATTTTTGTAGTACGTCAA---CGAAC-GTC-A--AATTAT-G-TTGT-T---TA--AGGttttgataagcccaaattctattatatatagatcttttattgatcaatgcgaatctatcactggtaaa
gi|30 : aaAAG-GT-C-T-TAAAAT---T-ATGT--TTAAAAAT--AATG-AGTGATGTTAACTCACCTATtcttaaaattatgtttaaaaataatgagtgatgttaactcacctat
gi|31 : aaactgcatatcaaattttgcaagtatatttttgtagtacgtcaacgaacgtcaaattatgttgtttTAGGGAG---AT---T-TCCAT-TATCTG-TTATCTGTAAAC-AACGTGC-TA--TAAGCT---A-TTGG--ACAAAAGT--TATG-
gi|4 : ATTACACAT-ACAATTTTGCAAACATATTTAAGGTGTAAAACAG---CAATT-TCC-G--AACTTT-G-CCGT-T---TT--ATGTGA-ACTAGGTAG---AT---T-ACTTTATATCTG-TGATTTCTAAAG-AGCG-TTCCAT-TAgaaaaaaccaattctatttaat
gi|5 : taaTACATAT-TTAGTTCTGCAAACGCATTTTAGGTGTTCGTAAG---CAAAC-CTC-A--AATCTA-G-CTGTAT---TA---GGGGA-ACTAGGAAT---AT---A-TCCAC-TGTCAA-TTATAGCTAAAG-ATAG-AG-CAT-TAAAAT---T-CTGGACTT--AGAT--TATG-AGtgtactggactaagatcatgaagcaactgaattcaattttgtat
gi|6 : aaaACTGCATAT-CAAATGTTGCAAGTATATTTTGTGAGTACGTCAA---CAAAC-GTC-A--AATTAT-G-CTGT-T---TA--TGGGGA-ATTAGGGTG---AT---T-TCCAT-TAACTG-TAATAAGTAGGG-AAAG-GT-CGT-TAAAAT---T-TTGG--TTAAAGGT--AATG-AGTGATGTTAACTCACCTATATACaaacccaaattctattatatata
gi|7 : ACTGCATAT-CAACTTTTGCAAGTATATTTTGGGAGTACGTCAA---CAAAC-GTC-A--AATTAT-G-CTGT-T---TA--TGGGAA-ATAAGGGCG---AT---T-TCCAT-TAAATG-TAATAAGTAGAG-AAAG-AT-CGT-TAAAGC---T-TTGG--TTAAAGAT--AATG-AGTGATGTTAACTCACCTATATA
gi|8 : aCATAT-ACAATTTTGTAAACGCATATTGAGAGTGCGCCAA---TAAAT-ACC-T--AATTAT-G-CTAT-A---TA--TGGTTA-ACTAGGAAG---AT---T-TCCTC-TATCAT-TAATCTGTAAAG-AAAG-AT-CTT-TAAAGT---T-TCAG--TTAAGAAT--TGTGAAGT-CTGTTAACTCGCCTATTTA
gi|9 : aTGCGTAT-CAAATTCTGTAA----ATAGTGGGTGTACGTCAA---CAAAC-ACC-C--TAACAT-GGCCGT-C---TA--TGACGA-ATTATGGAG---ACG--T-CCCAT-TATAAA-TTATGAGTAAAG-AGCA-TT-CAA-TAAAGT---T-ATGG--TTAAAAAG--TATG-AAAAATGTTAA--CACCTTTAtg
5 sequences could not be aligned to this reference sequence:
Unaligned ( gi|20 ): ACCGCATAATTGTATACGTTTTTGTAAATATGGATTACTACTAATCTCAAGCTACACTGTATAAGTACTAGGTAGATTCCCGTTACGTGTATCTATAATGCACAAGGACAATGATCATTTAAATGAAAACTGCAAAATGTGGATAA
Unaligned ( gi|22 ): CAGTAAACTTCAAATCTAGCTGCTTCGGGGAGCTTAGAAGCCTTCCACTGTTAATTATTACCTAAGAGAGACCATTATTTTTATTAAGATCTTGGAAAACAAACCCTAGTTTTGTTATTCATATATCCTTTGCCGATCATTG
Unaligned ( gi|26 ): AATGTACCCCTGTCAATTATTGCTAAATGTAGAGAATTAAAATTTTGGAGTAAGATAATGAAAAACCCAATTGAATTATGTTATTCATAAATCTTTTTGTTGATAAATGTGAAAATATCACTGGTAAA
Unaligned ( gi|32 ): TGTGATTGCTAAAGAACTTTCCATTATGTACTGGACTAAGATCATGAAGCAAACGAATTCAATTTTGTATAAAT
Unaligned ( gi|33 ): AATTATAGCTAAAGAGAGACTGGACTAAGATCATGAAAAACCAAATTCTATTACATGTATAT