lowQualScore : 1111111111111 33333333333333333333333333333333333333333333 99999999999999999999999999999999999999999999999999 1 222222 44444444444 11 1111
lowQualScore : 8888888888888 99999999999999999999999999999999999999999999 999 66 66 22222222222222222222222222222222222222222222222222 0 444444 2 3 3 99999999999 11 0000 9 2
lowQualScore : ............. ............................................ ... .. .. .................................................. . ...... . . . ........... .. .... . .
lowQualScore : 3333333333333 88888888888888888888888888888888888888888888 888 11 11 88888888888888888888888888888888888888888888888888 0 777777 4 6 9 44444444444 11 6666 2 2
consensus : TATTTTATTGCCATCTTATTT-------------ACAG----------------C--AA---AT---T--------------CTCACAAC-AT--TA--GT--T--CCTG---C-------TCTCCNC--TAAAC---TATGACGANTAATTGAGAAAACACGAC-A----TGGCATATAACACAT-TATAAAAAGGATAATCTTG----ATACAAAATGAAAAGAAAATACCCAC
Reference ( gi|8 ) : TATTTTATTGCCATCTTATTT-------------ACAG----------------C--AA---AT---T--------------CTCACAGC-AT--TA--GT--T--CCTG---T-------TCTCCAC--TAAAC---TAGGACTATTTATTGAGAAAACACGAC-T----TGGCATATAATACAT-T-TAAGGAGGATAAACTTG----ATACAAAATGAAAAGAAAATACCCAC
gi|6 : TATTTTATTGCCATCTTATTT-------------ACAG----------------C--AA---AT---T--------------CTCACAGC-AT--TA--GT--T--CCTG---T-------TCTCCAC--TAAAC---TAGGACTATTTATTGAGAAAACACGAC-T----TGGCATATAATACAT-T-TAAAGAGGATAAACTTG----ATATAAAATGAAAAGAAAATACCCAC
gi|9 : TATTTTTTCACCATATCATTT-------------ACAA----------------C--AA---AT---T--------------CTCACAAT-AT--TA--GTTAT--CC--------------CTC--C--TAAAC---TA----T-----TCGAGACAACA----------TGGC--ATAACACAT-GATAA-AAGTATAGTCTTG----ATACAAAATGAAAAGAAAATACa
gi|10 : caTATTTTTTCACCAT---ATT--------------ACAA----------------C--AA---AT---T--------------CTCACAAT-AT--TA--GT--TATCC--------------CTCC----TAAAC---TA--------T-TCGAGACAACA----------TGGCATA--ACACAT-GATAAA-AGTATAGTCTTG----ATACAAAATGAAAAGAAAATACac
gi|1 : aTATTTGATTGCCATCTTATTT-------------GCAATAGACGAGTTGGTCTAC--AA---AT---T--------------CTCACAAC-AT--TA--CT--T----TG---TACGACCCTCTCTTG--TA------TATGGCAAGTAATTGAGAAAACATGAC-A----TGG--TATAACACAT-G-ACAAAATAATAAAATTA----GTACAAAAGGAAAAAAAA
gi|11 : catcgTATTTTATTGCGATCTTGTTT-------------ACAG----------------C--GA-------------------------TAAAG---T--TG--G---------G---C-------TC-CCAC----AAC----------ATTAGTTGAGAAAACATGGC-A----TGGCATGCCAT--AT-TATAAAAAAGATAATCTTA----ATACAAAA--AAAAGcattc
gi|7 : aTATTTTATTACCATCTTATTG-------------ACAG-------------------AA---ATAGGA--------------CTCAAAAC-AT--TT--GA--T--ACCGACCC-------CCTCCCC--TGATA---TGTGATGATTAAATGAGAACATATGAC-A----TG--ATATAACAGATAT-CAACACTGTTA---TTG----ATACAGAAGGAAAAAAAAcaccta
gi|16 : taaccaTATTTTATTGCCGTCTTATTT-------------ACAG----------------C--AA---ca
gi|3 : tttataaTATTTTATTGTCATCTTATTTTGTGGGTTTGGCCACAT----------------CTCGA---GT---T--------------TTCACATTTATGATAACGG--T--CCTA---C--------CTCTAA--TACATGTATATGACAAATGATTGAGAAAACGCGAC-A----TAGCACGTGATAAAA-T-C------GATAATCTTGAATTATACAAAA-GAAAAAACAACAtg
gi|2 : TATTTTATTGCCTTCTTATTT-------------AAAA----------------A--AA---AT---GGGGCGGGAGGCACATTCAC-CC-AT--TT--GT--T--ACGG---C-------ACTCCCCCATAATA---TATGACAAATAATTGAGAAGACATGAC-A----TGTCA-A-AATACAT-a
gi|13 : atcaTATTATACTGCCATCTTATTT-------------ACAG----------------C--AA---gataaaagtacatgtatacatagtgtgtacacagcaacaaaaa
gi|14 : atcaTATTTTATTGCACTCTTATTT-------------ACAT----------------C--AA---tggggtttgtcacatattctgacaacata
gi|15 : TTTTATTGCCATCATATTT-------------ACAG----------------C--AATGGGT---T--------------CTCACAAC-AT--TA--GT--T--tgcggttgggctacaaataattgagaaacatg
gi|12 : aatatGAGAAAACATGACATAGCATGGCACATGATA-AT-T-------GAATCATCTTA----ATACAAAATGAAAA-ACAAGACCacagcc
2 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|4 ): GTCATATTTTACTACTATTCTATTTTCCAGTGGGGTTAGACCGCAAGGTCTCACAACGTAGTACTAAGTTACAACCCTTCCCCTTATACAAATATATGGCAAACAACTGGACAAAATCATGACATAGCATGACACATGATGAAAAGGATAATCAATTA
Unaligned ( gi|5 ): ATTGTATTGTCATCATATTGCCAGAAATAGGGCAGGGCAACAAGTTTTTACAACATTGTTAATGCACTCTCCTGATATATGACAAATACATGATAACACCTAACATGATGTAATATATGTTTTCAACGATCTTGATACAAAAAGGAAAAAAAATA
Alignments
lowQualScore : 6666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666 33333333333333 2222222222222222 1111111 111111
lowQualScore : 2222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222 555 77777 888 11111111111111 44 1 1111111111111111 11 8 3 1 3 0 3 2222222 111111 4444 8888 8 1
lowQualScore : ........................................................................................... ... ..... ... .............. .. . ................ .. . . . . . . ....... ...... .... .... . .
lowQualScore : 9999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999 444 77777 666 55555555555555 00 0 7777777777777777 66 6 5 5 3 2 3 8888888 777777 3333 5555 2 4
consensus : TATTTTATTGCCATCTTATT--------T--------------A--------CAG----------------C--AA---------------AT---T--------------CTCACA---ACAT-----TA--GTTNCTG---C-----TCT-CCCCT-----A-A-AC-----TATGACAANTAATTG-AGAAAA-CACGACATGGCATATAACACAT--GATAAAAAGGATAATCTTG----ATACAAAATGAAAAGAAAATACCCAC
Reference ( family-4013 ) : TATTTTATTGCCATCTTATT--------T--------------A--------CAG----------------C--AA---------------AT---T--------------CTCACA---ACAT-----TA--GTTCCTG---C-----TCT-CCNCT-----A-A-AC-----TATGACGANTAATTG-AGAAAA-CACGACATGGCATATAACACAT--TATAAAAAGGATAATCTTG----ATACAAAATGAAAAGAAAATACCCAC
gi|1 : TATTTGATTGCCATCTTATT--------T--------------G--------CAATAGACGAGTTGGTCTAC--AA---------------AT---T--------------CTCACA---ACAT-----TA--CTTTGTA---CGACCCTCT-CTTGT-----A----------TATGGCAAGTAATTG-AGAAAA-CATGACATGG--TATAACACAT--GAC-AAAATAATAAAATTA----GTACAAAAGGAAAAAAAA
gi|10 : catcgTATTTTTTCACCAT---ATT-----------------------A--------CAA----------------C--AA---------------AT---T--------------CTCACA---ATAT-----TA--GTT-------A-----TCC-CTCCT-----A-A-AC-----TAT---------TCG-AG------ACAACATGGC--ATAACACAT--GAT-AAAAGTATAGTCTTG----ATACAAAATGAAAAGAAAATACcattc
gi|11 : aTATTTTATTGCGATCTTGTT--------T--------------A--------CAG----------------C--GA---------------------------------------TA---AAGT-----TG--G-----G---C-----TC--CCAC--------A-AC------------ATTAGTTG-AGAAAA-CATGGCATGGCATGC--CATAT--TATAAAAAAGATAATCTTA----ATACAAAA--AAAAG
gi|12 : aG-AGAAAA-CATGACATAGCATG--GCACAT--GATAATT-GAATCATCTTA----ATACAAAATGAAAA-ACAAGACCcaccta
gi|13 : TATTATACTGCCATCTTATT--------T--------------A--------CAG----------------C--AATGGGGTTTGTCACATAT---T--------------CTGACA---ACAT-----a
gi|15 : atcaTTTTATTGCCATCATATT--------T--------------A--------CAG----------------C--AATGG------------GT---T--------------CTCACA---ACAT-----TA--GTTa
gi|16 : aatatTATTTTATTGCCGTCTTATT--------T--------------A--------CAG----------------C--AA---------------acagcc
gi|2 : tttataaTATTTTATTGCCTTCTTATT--------T--------------A--------AAA----------------A--AA---------------AT---GGGGCGGGAGGCACATTCACC----CAT-----TT--GTTACGG---C-----ACT-CCCCC-----ATA-ATA----TATGACAAATAATTG-AGAAGA-CATGACATGTCA-A-AATACAT--GATAAAAtg
gi|3 : atcaTATTTTATTGTCATCTTATT--------TTGTGGGTTTGGCC-A--------CAT----------------CTCGA---------------GT---T--------------TTCACATTTATGA-----TAACGGTCCTA---C----------CTCT-----A-ATACATGTATATGACAAATGATTG-AGAAAA-CGCGACATAG-------CACGT--GATAAAATCGATAATCTTGAATTATACAAAA-GAAAAAACAACAgtacatgtatacatagtgtgtacacagcaacaaaaa
gi|4 : TATTTTACTACTATTCTATT--------TTCCAGTGGGGTTAGA--------CCG----------------C--AA---------------GG---T--------------CTCACA---ACGTAGTACTAA-GTTACAA---C-----CCTTCCCCTTATACA-A-ATA----TATGGCAAACAACTGGACAAAATCATGACATAGCATG--ACACAT--GATGAAAAGGATAATCa
gi|5 : gtcaATTGTATTGTCATCATATTGCCAGAAAT--------------AGGGCAGGGCAA----------------C--AA---------------GT---T--------------TTTACA---ACAT-----T---GTTAATG---C-----ACT-CTCCT-----G-A-TA-----TATGACAAATACATG-ATAACA-CCTAACATG--ATGTAATATATGTTTTCAA-----CGATCTTG----ATACAAAAAGGAAAAAAAATAaatta
gi|6 : TATTTTATTGCCATCTTATT--------T--------------A--------CAG----------------C--AA---------------AT---T--------------CTCACA---GCAT-----TA--GTTCCTG---T-----TCT-CCACT-----A-A-AC-----TAGGACTATTTATTG-AGAAAA-CACGACTTGGCATATAATACAT--T-TAAAGAGGATAAACTTG----ATATAAAATGAAAAGAAAATACCCAC
gi|7 : TATTTTATTACCATCTTATT--------G--------------A--------CAG-------------------AA---------------ATAGGA--------------CTCAAA---ACAT-----TT--GATACCGACCC-----CCT-CCCCT-----G-A-TA-----TGTGATGATTAAATG-AGAACA-TATGACATG--ATATAACAGA---TATCAACACTGT--TATTG----ATACAGAAGGAAAAAAAAa
gi|8 : taaccaTATTTTATTGCCATCTTATT--------T--------------A--------CAG----------------C--AA---------------AT---T--------------CTCACA---GCAT-----TA--GTTCCTG---T-----TCT-CCACT-----A-A-AC-----TAGGACTATTTATTG-AGAAAA-CACGACTTGGCATATAATACAT--T-TAAGGAGGATAAACTTG----ATACAAAATGAAAAGAAAATACCCACca
gi|9 : TATTTTTTCACCATATCATT--------T--------------A--------CAA----------------C--AA---------------AT---T--------------CTCACA---ATAT-----TA--GTT-------A-----TCC-CTCCT-----A-A-AC-----TAT---------TCG-AG------ACAACATGGC--ATAACACAT--GAT-AAAAGTATAGTCTTG----ATACAAAATGAAAAGAAAATAC
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|14 ): TATTTTATTGCACTCTTATTTACATCAATGCGGTTGGGCTACAAATAATTGAGAAACATG
Alignments
lowQualScore : 6666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666 2222222222 2222222222222222 11
lowQualScore : 2222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222 77777 888 1111111111 1 7 1111111111111111 11 3 3 1 3 0 3 22 99 1 77 8888 8 1
lowQualScore : ........................................................................................... ..... ... .......... . . ................ .. . . . . . . .. .. . .. .... . .
lowQualScore : 9999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999 77777 666 7777777777 2 3 1111111111111111 66 6 5 5 3 2 3 99 88 3 33 5555 2 4
consensus : TATTTTATTGCCATCTTATT--------T--------------A--------CAG----------------C--AA---------------AT---T--------------CTCACAACAT-----TA--GTTA---CNG---CCCT-CCCCT-----A-A-AC-----TATGACAANTAATTG-AGAAAA-CACGACATGGCATATAACACATGATAAAAAGGATAATCTTG----ATACAAAATGAAAAGAAAATACCCAC
Reference ( family-4013 ) : TATTTTATTGCCATCTTATT--------T--------------A--------CAG----------------C--AA---------------AT---T--------------CTCACAACAT-----TA--GTTN---CTG---CTCT-CCCCT-----A-A-AC-----TATGACAANTAATTG-AGAAAA-CACGACATGGCATATAACACATGATAAAAAGGATAATCTTG----ATACAAAATGAAAAGAAAATACCCAC
gi|1 : TATTTGATTGCCATCTTATT--------T--------------G--------CAATAGACGAGTTGGTCTAC--AA---------------AT---T--------------CTCACAACAT-----TA--CTTTGTACGA---CCCT-CTCTT-----G-T-A------TATGGCAAGTAATTG-AGAAAA-CATGACATGG--TATAACACATGAC-AAAATAATAAAATTA----GTACAAAAGGAAAAAAAA
gi|10 : catcgTATTTTTTCACCAT---ATT-----------------------A--------CAA----------------C--AA---------------AT---T--------------CTCACAATAT-----TA--GTTA----------TCC-CTCCT-----A-A-AC-----TAT---------TCG-AGA------CAACATGGCATA--ACACATGATAAAA-GTATAGTCTTG----ATACAAAATGAAAAGAAAATACcattc
gi|11 : aTATTTTATTGCGATCTTGTT--------T--------------A--------CAG----------------C--GA---------------------------------------TAAAGT-----TG--G--------G---CTCC-CAC---------A-AC------------ATTAGTTG-AGAAAA-CATGGCATGGCATGC--CATATTATAAAAAAGATAATCTTA----ATACAAAA--AAAAG
gi|12 : aG-AGAAAA-CATGACATAGCATG--GCACATGATAATT-GAATCATCTTA----ATACAAAATGAAAA-ACAAGACCcaccta
gi|13 : TATTATACTGCCATCTTATT--------T--------------A--------CAG----------------C--AATGGGGTTTGTCACATAT---T--------------CTGACAACAT-----a
gi|15 : atcaTTTTATTGCCATCATATT--------T--------------A--------CAG----------------C--AATGG------------GT---T--------------CTCACAACAT-----TA--GTTA---CAG---Ca
gi|16 : aatatTATTTTATTGCCGTCTTATT--------T--------------A--------CAG----------------C--AA---------------c
gi|2 : tttataaTATTTTATTGCCTTCTTATT--------T--------------A--------AAA----------------A--AA---------------AT---GGGGCGGGAGGCACATTCACC-CAT-----TT--GTTA---CGG---CACT-CCCCC-----ATA-ATA----TATGACAAATAATTG-AGAAGA-CATGACATGTCA-A-AATACATGATAAAAtg
gi|3 : atcaTATTTTATTGTCATCTTATT--------TTGTGGGTTTGGCC-A--------CAT----------------CTCGA---------------GT---T--------------TTCACAT--T-----TATGATAA---CGG---TCCTACCTCT-----A-ATACATGTATATGACAAATGATTG-AGAAAA-CGCGACATAG-------CACGTGATAAAATCGATAATCTTGAATTATACAAAA-GAAAAAACAACAgtacatgtatacatagtgtgtacacagcaacaaaaa
gi|4 : TATTTTACTACTATTCTATT--------TTCCAGTGGGGTTAGA--------CCG----------------C--AA---------------GG---T--------------CTCACAACGTAGTACTAA-GTTA---CAA---CCCTTCCCCTTATACA-A-ATA----TATGGCAAACAACTGGACAAAATCATGACATAGCATG--ACACATGATGAAAAGGATAATCa
gi|5 : gtcaATTGTATTGTCATCATATTGCCAGAAAT--------------AGGGCAGGGCAA----------------C--AA---------------GT---T--------------TTTACAACAT-----T---GTTA---ATG---CACT-CTCCT-----G-A-TA-----TATGACAAATACATG-ATAACA-CCTAACATG--ATGTAATATATGTTTTCAACG---ATCTTG----ATACAAAAAGGAAAAAAAATAaatta
gi|6 : TATTTTATTGCCATCTTATT--------T--------------A--------CAG----------------C--AA---------------AT---T--------------CTCACAGCAT-----TA--GTTC---CTG---TTCT-CCACT-----A-A-AC-----TAGGACTATTTATTG-AGAAAA-CACGACTTGGCATATAATACATT-TAAAGAGGATAAACTTG----ATATAAAATGAAAAGAAAATACCCAC
gi|7 : TATTTTATTACCATCTTATT--------G--------------A--------CAG-------------------AA---------------ATAGGA--------------CTCAAAACAT-----TT--GATA---CCGACCCCCT-CCCCT-----G-A-TA-----TGTGATGATTAAATG-AGAACA-TATGACATG--ATATAACA---GATATCAACACTGTTATTG----ATACAGAAGGAAAAAAAAa
gi|8 : taaccaTATTTTATTGCCATCTTATT--------T--------------A--------CAG----------------C--AA---------------AT---T--------------CTCACAGCAT-----TA--GTTC---CTG---TTCT-CCACT-----A-A-AC-----TAGGACTATTTATTG-AGAAAA-CACGACTTGGCATATAATACATT-TAAGGAGGATAAACTTG----ATACAAAATGAAAAGAAAATACCCACca
gi|9 : TATTTTTTCACCATATCATT--------T--------------A--------CAA----------------C--AA---------------AT---T--------------CTCACAATAT-----TA--GTTA----------TCC-CTCCT-----A-A-AC-----TAT---------TCG-AGA------CAACATGGCATA--ACACATGATAAAA-GTATAGTCTTG----ATACAAAATGAAAAGAAAATAC
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|14 ): TATTTTATTGCACTCTTATTTACATCAATGCGGTTGGGCTACAAATAATTGAGAAACATG
Alignments
lowQualScore : 6666666666666666666666666666666666666666666666666666666666666666666666666666666666666666 1111111111 2222222222222222 11
lowQualScore : 2222222222222222222222222222222222222222222222222222222222222222222222222222222222222222 0 888888888 1111111111 1 7 0 7777777777777777 0 444 1 3 0 3 22 33 1 2 22 8888 8 1
lowQualScore : ........................................................................................ . ......... .......... . . . ................ . ... . . . . .. .. . . .. .... . .
lowQualScore : 9999999999999999999999999999999999999999999999999999999999999999999999999999999999999999 2 000000000 2222222222 0 3 5 7777777777777777 5 888 5 3 2 3 99 77 3 6 88 5555 2 4
consensus : TATTTTATTGCCATCTTATT--------T--------------A--------CAG----------------C--AA---------------ATT--------------CTCACAACAT-----TA--GTT---ACGG---CCCT-CCCCT-----A-A-AC-----TATGACAANTAATTG-AGAAAA-CACGACATGGCATATAACACATGATAAAAAGGATAATCTTG----ATACAAAATGAAAAGAAAATACCCAC
Reference ( family-4013 ) : TATTTTATTGCCATCTTATT--------T--------------A--------CAG----------------C--AA---------------ATT--------------CTCACAACAT-----TA--GTT---ACNG---CCCT-CCCCT-----A-A-AC-----TATGACAANTAATTG-AGAAAA-CACGACATGGCATATAACACATGATAAAAAGGATAATCTTG----ATACAAAATGAAAAGAAAATACCCAC
gi|1 : TATTTGATTGCCATCTTATT--------T--------------G--------CAATAGACGAGTTGGTCTAC--AA---------------ATT--------------CTCACAACAT-----TA--CTTTGTACGA---CCCT-CTCTT-----G-T-A------TATGGCAAGTAATTG-AGAAAA-CATGACATGG--TATAACACATGAC-AAAATAATAAAATTA----GTACAAAAGGAAAAAAAA
gi|10 : catcgTATTTTTTCACCAT---ATT-----------------------A--------CAA----------------C--AA---------------ATT--------------CTCACAATAT-----TA--GTT---AT-----CCCT-CC--T-----A-A-AC-----TAT---------TCG-AGA------CAACATGGCATA--ACACATGATAAAA-GTATAGTCTTG----ATACAAAATGAAAAGAAAATACcattc
gi|11 : aTATTTTATTGCGATCTTGTT--------T--------------A--------CAG----------------C--GA------------------------------------TAA---------A--GTT---G-GG---C--T-CCC-------------------ACAACA-TTAGTTG-AGAAAA-CATGGCATGGCATGC--CATATTATAAAAAAGATAATCTTA----ATACAAAA--AAAAG
gi|12 : aG-AGAAAA-CATGACATAGCATG--GCACATGATAATT-GAATCATCTTA----ATACAAAATGAAAA-ACAAGACCcaccta
gi|13 : TATTATACTGCCATCTTATT--------T--------------A--------CAG----------------C--AATGGGGTTTGTCACATATT--------------CTGACAACAT-----a
gi|15 : atcaTTTTATTGCCATCATATT--------T--------------A--------CAG----------------C--AATGG------------GTT--------------CTCACAACAT-----TA--GTT---ACAG---CCa
gi|16 : aatatTATTTTATTGCCGTCTTATT--------T--------------A--------CAG----------------C--AA---------------
gi|2 : tttataaTATTTTATTGCCTTCTTATT--------T--------------A--------AAA----------------A--AA---------------ATGGGGCGGGAGGCACATTCACC-CAT-----TT--GTT---ACGG---CACT-CCCCC-----ATA-ATA----TATGACAAATAATTG-AGAAGA-CATGACATGTCA-A-AATACATGATAAAAtg
gi|3 : atcaTATTTTATTGTCATCTTATT--------TTGTGGGTTTGGCC-A--------CAT----------------CTCGA---------------GTT--------------TTCACAT--T-----TATGATA---ACGG---TCCTACCTCT-----A-ATACATGTATATGACAAATGATTG-AGAAAA-CGCGACATAG-------CACGTGATAAAATCGATAATCTTGAATTATACAAAA-GAAAAAACAACAgtacatgtatacatagtgtgtacacagcaacaaaaa
gi|4 : TATTTTACTACTATTCTATT--------TTCCAGTGGGGTTAGA--------CCG----------------C--AA---------------GGT--------------CTCACAACGTAGTACTAA-GTT---ACAA---CCCTTCCCCTTATACA-A-ATA----TATGGCAAACAACTGGACAAAATCATGACATAGCATG--ACACATGATGAAAAGGATAATCa
gi|5 : gtcaATTGTATTGTCATCATATTGCCAGAAAT--------------AGGGCAGGGCAA----------------C--AA---------------GTT--------------TTTACAACAT-----T---GTT---AATG---CACT-CTCCT-----G-A-TA-----TATGACAAATACATG-ATAACA-CCTAACATG--ATGTAATATATGTTTTCAACG---ATCTTG----ATACAAAAAGGAAAAAAAATAaatta
gi|6 : TATTTTATTGCCATCTTATT--------T--------------A--------CAG----------------C--AA---------------ATT--------------CTCACAGCAT-----TA--GTT---CCTG---TTCT-CCACT-----A-A-AC-----TAGGACTATTTATTG-AGAAAA-CACGACTTGGCATATAATACATT-TAAAGAGGATAAACTTG----ATATAAAATGAAAAGAAAATACCCAC
gi|7 : TATTTTATTACCATCTTATT--------G--------------A--------CAG-------------------AA---------------ATAGGA-----------CTCAAAACAT-----TT--GAT---ACCGACCCCCT-CCCCT-----G-A-TA-----TGTGATGATTAAATG-AGAACA-TATGACATG--ATATAACA---GATATCAACACTGTTATTG----ATACAGAAGGAAAAAAAAa
gi|8 : taaccaTATTTTATTGCCATCTTATT--------T--------------A--------CAG----------------C--AA---------------ATT--------------CTCACAGCAT-----TA--GTT---CCTG---TTCT-CCACT-----A-A-AC-----TAGGACTATTTATTG-AGAAAA-CACGACTTGGCATATAATACATT-TAAGGAGGATAAACTTG----ATACAAAATGAAAAGAAAATACCCACca
gi|9 : TATTTTTTCACCATATCATT--------T--------------A--------CAA----------------C--AA---------------ATT--------------CTCACAATAT-----TA--GTT---AT-----CCCT---CCT-----A-A-AC-----TAT---------TCG-AG------ACAACATGGC--ATAACACATGAT-AAAAGTATAGTCTTG----ATACAAAATGAAAAGAAAATAC
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|14 ): TATTTTATTGCACTCTTATTTACATCAATGCGGTTGGGCTACAAATAATTGAGAAACATG
Alignments
lowQualScore : 6666666666666666666666666666666666666666666666666666666666666666666666666666666666666666 1111111111 2222222222222222 11
lowQualScore : 2222222222222222222222222222222222222222222222222222222222222222222222222222222222222222 0 888888888 3333333333 1 7 0 7777777777777777 0 444 1 3 0 3 22 33 1 2 22 8888 8 1
lowQualScore : ........................................................................................ . ......... .......... . . . ................ . ... . . . . .. .. . . .. .... . .
lowQualScore : 9999999999999999999999999999999999999999999999999999999999999999999999999999999999999999 2 000000000 0000000000 0 3 5 7777777777777777 5 888 5 3 2 3 99 77 3 6 88 5555 2 4
consensus : TATTTTATTGCCATCTTATT--------T--------------A--------CAG----------------C--AA---------------ATT--------------CTCACAACAT-----TA--GTT---ACGG---CCCT-CCCCT-----A-A-AC-----TATGACAANTAATTG-AGAAAA-CACGACATGGCATATAACACATGATAAAAAGGATAATCTTG----ATACAAAATGAAAAGAAAATACCCAC
Reference ( family-4013 ) : TATTTTATTGCCATCTTATT--------T--------------A--------CAG----------------C--AA---------------ATT--------------CTCACAACAT-----TA--GTT---ACGG---CCCT-CCCCT-----A-A-AC-----TATGACAANTAATTG-AGAAAA-CACGACATGGCATATAACACATGATAAAAAGGATAATCTTG----ATACAAAATGAAAAGAAAATACCCAC
gi|1 : TATTTGATTGCCATCTTATT--------T--------------G--------CAATAGACGAGTTGGTCTAC--AA---------------ATT--------------CTCACAACAT-----TA--CTTTGTACGA---CCCT-CTCTT-----G-T-A------TATGGCAAGTAATTG-AGAAAA-CATGACATGG--TATAACACATGAC-AAAATAATAAAATTA----GTACAAAAGGAAAAAAAA
gi|10 : catcgTATTTTTTCACCAT---ATT-----------------------A--------CAA----------------C--AA---------------ATT--------------CTCACAATAT-----TA--GTT---AT-----CCCT-CC--T-----A-A-AC-----TAT---------TCG-AGA------CAACATGGCATA--ACACATGATAAAA-GTATAGTCTTG----ATACAAAATGAAAAGAAAATACcattc
gi|11 : aTATTTTATTGCGATCTTGTT--------T--------------A--------CAG----------------C--GA------------------------------------TAA---------A--GTT---G-GG---C--T-CCC-------------------ACAACA-TTAGTTG-AGAAAA-CATGGCATGGCATGC--CATATTATAAAAAAGATAATCTTA----ATACAAAA--AAAAG
gi|12 : aG-AGAAAA-CATGACATAGCATG--GCACATGATAATT-GAATCATCTTA----ATACAAAATGAAAA-ACAAGACCcaccta
gi|13 : TATTATACTGCCATCTTATT--------T--------------A--------CAG----------------C--AATGGGGTTTGTCACATATT--------------CTGACAACAT-----a
gi|15 : atcaTTTTATTGCCATCATATT--------T--------------A--------CAG----------------C--AATGG------------GTT--------------CTCACAACAT-----TA--GTT---ACAG---CCa
gi|16 : aatatTATTTTATTGCCGTCTTATT--------T--------------A--------CAG----------------C--AA---------------
gi|2 : tttataaTATTTTATTGCCTTCTTATT--------T--------------A--------AAA----------------A--AA---------------ATGGGGCGGGAGGCACATTCACC-CAT-----TT--GTT---ACGG---CACT-CCCCC-----ATA-ATA----TATGACAAATAATTG-AGAAGA-CATGACATGTCA-A-AATACATGATAAAAtg
gi|3 : atcaTATTTTATTGTCATCTTATT--------TTGTGGGTTTGGCC-A--------CAT----------------CTCGA---------------GTT--------------TTCACAT--T-----TATGATA---ACGG---TCCTACCTCT-----A-ATACATGTATATGACAAATGATTG-AGAAAA-CGCGACATAG-------CACGTGATAAAATCGATAATCTTGAATTATACAAAA-GAAAAAACAACAgtacatgtatacatagtgtgtacacagcaacaaaaa
gi|4 : TATTTTACTACTATTCTATT--------TTCCAGTGGGGTTAGA--------CCG----------------C--AA---------------GGT--------------CTCACAACGTAGTACTAA-GTT---ACAA---CCCTTCCCCTTATACA-A-ATA----TATGGCAAACAACTGGACAAAATCATGACATAGCATG--ACACATGATGAAAAGGATAATCa
gi|5 : gtcaATTGTATTGTCATCATATTGCCAGAAAT--------------AGGGCAGGGCAA----------------C--AA---------------GTT--------------TTTACAACAT-----T---GTT---AATG---CACT-CTCCT-----G-A-TA-----TATGACAAATACATG-ATAACA-CCTAACATG--ATGTAATATATGTTTTCAACG---ATCTTG----ATACAAAAAGGAAAAAAAATAaatta
gi|6 : TATTTTATTGCCATCTTATT--------T--------------A--------CAG----------------C--AA---------------ATT--------------CTCACAGCAT-----TA--GTT---CCTG---TTCT-CCACT-----A-A-AC-----TAGGACTATTTATTG-AGAAAA-CACGACTTGGCATATAATACATT-TAAAGAGGATAAACTTG----ATATAAAATGAAAAGAAAATACCCAC
gi|7 : TATTTTATTACCATCTTATT--------G--------------A--------CAG-------------------AA---------------ATAGGA-----------CTCAAAACAT-----TT--GAT---ACCGACCCCCT-CCCCT-----G-A-TA-----TGTGATGATTAAATG-AGAACA-TATGACATG--ATATAACA---GATATCAACACTGTTATTG----ATACAGAAGGAAAAAAAAa
gi|8 : taaccaTATTTTATTGCCATCTTATT--------T--------------A--------CAG----------------C--AA---------------ATT--------------CTCACAGCAT-----TA--GTT---CCTG---TTCT-CCACT-----A-A-AC-----TAGGACTATTTATTG-AGAAAA-CACGACTTGGCATATAATACATT-TAAGGAGGATAAACTTG----ATACAAAATGAAAAGAAAATACCCACca
gi|9 : TATTTTTTCACCATATCATT--------T--------------A--------CAA----------------C--AA---------------ATT--------------CTCACAATAT-----TA--GTT---AT-----CCCT---CCT-----A-A-AC-----TAT---------TCG-AG------ACAACATGGC--ATAACACATGAT-AAAAGTATAGTCTTG----ATACAAAATGAAAAGAAAATAC
blockSeqs : GCCAGAAATAGGGCAGGGCAACAAGTT AGTACTAA ACCGACC C A AATACATGTA AAA A G T GC TA A A AA AATT T G
blockSeqs : TACAGCAATGGGGTTTGTCACATATT TATG ACAG C T TATACAAATA AAA A . . GC TA A A TC . T G
blockSeqs : TTGTGGGTTTGGCCACATCTCGAGTT TA ACGG A . ATAATA AAA G . . GC TA A A AG . A A
blockSeqs : TAAAAAAAATGGGGCGGGAGGCACA TA ACGG C . AAAC AAA A . . TC TA A A AC . T A
blockSeqs : TTCCAGTGGGGTTAGACCGCAAGGT TT ACAA C . GATA TAT A . . GC TA A A AG . G G
blockSeqs : TACAGCAATGGGTT TA AATG A . AAAC GAT T . . GC C A G AC . T A
blockSeqs : GACAGAAATAGGA TT CCTG T . GATA TAT A . . GC A T T AG . T G
blockSeqs : TACAGCAAATT TA CCTG C . AAAC AT T . . GC . A A AG . . G
blockSeqs : TACAGCAAATT TA GGG T . AAAC . . . . G . A A G . . .
blockSeqs : TACAACAAATT A AT C . . . . . . . . . A G
blockSeqs : ACAACAAATT T AT . . . . . . .
blockSeqs : TACAGCGA
blockSeqCons : ACNG****** AAAC************ GC
originalCons : TATTTTATTGCCATCTTATT--------T--------------A--------CAG----------------C--AA---------------ATT--------------CTCACAACAT-----TA--GTT---ACGG---CCCT-CCCCT-----A-A-AC-----TATGACAANTAATTG-AGAAAA-CACGACATGGCATATAACACATGATAAAAAGGATAATCTTG----ATACAAAATGAAAAGAAAATACCCAC
finalCons : TATTTTATTGCCATCTTATT--------T--------------A--------CAG----------------C--AA---------------ATT--------------CTCACAACAT-----TA--GTTACNG------CCCT-CCCCTAAAC------------TATGACAANTAATTG-AGAAAA-CACGACATGGCATATAACACATGATAAAAAGGATAATCTTG----ATACAAAATGAAAAGAAAATACCCAC
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|14 ): TATTTTATTGCACTCTTATTTACATCAATGCGGTTGGGCTACAAATAATTGAGAAACATG
Alignments
lowQualScore : 6666666666666666666666666666666666666666666666666666666666666666666666666666666666666666 1111111111 2222222222222222 11
lowQualScore : 2222222222222222222222222222222222222222222222222222222222222222222222222222222222222222 0 888888888 1111111111 1 7 0 7777777777777777 0 444 1 3 0 3 22 33 1 2 22 8888 8 1
lowQualScore : ........................................................................................ . ......... .......... . . . ................ . ... . . . . .. .. . . .. .... . .
lowQualScore : 9999999999999999999999999999999999999999999999999999999999999999999999999999999999999999 2 000000000 2222222222 0 3 5 7777777777777777 5 888 5 3 2 3 99 77 3 6 88 5555 2 4
consensus : TATTTTATTGCCATCTTATT--------T--------------A--------CAG----------------C--AA---------------ATT--------------CTCACAACAT-----TA--GTT---ACGG---CCCT-CCCCT-----A-A-AC-----TATGACAANTAATTG-AGAAAA-CACGACATGGCATATAACACATGATAAAAAGGATAATCTTG----ATACAAAATGAAAAGAAAATACCCAC
Reference ( family-4013 ) : TATTTTATTGCCATCTTATT--------T--------------A--------CAG----------------C--AA---------------ATT--------------CTCACAACAT-----TA--GTT---ACNG---CCCT-CCCCT-----A-A-AC-----TATGACAANTAATTG-AGAAAA-CACGACATGGCATATAACACATGATAAAAAGGATAATCTTG----ATACAAAATGAAAAGAAAATACCCAC
gi|1 : TATTTGATTGCCATCTTATT--------T--------------G--------CAATAGACGAGTTGGTCTAC--AA---------------ATT--------------CTCACAACAT-----TA--CTTTGTACGA---CCCT-CTCTT-----G-T-A------TATGGCAAGTAATTG-AGAAAA-CATGACATGG--TATAACACATGAC-AAAATAATAAAATTA----GTACAAAAGGAAAAAAAA
gi|10 : catcgTATTTTTTCACCAT---ATT-----------------------A--------CAA----------------C--AA---------------ATT--------------CTCACAATAT-----TA--GTT---AT-----CCCT-CC--T-----A-A-AC-----TAT---------TCG-AGA------CAACATGGCATA--ACACATGATAAAA-GTATAGTCTTG----ATACAAAATGAAAAGAAAATACcattc
gi|11 : aTATTTTATTGCGATCTTGTT--------T--------------A--------CAG----------------C--GA------------------------------------TAA---------A--GTT---G-GG---C--T-CCC-------------------ACAACA-TTAGTTG-AGAAAA-CATGGCATGGCATGC--CATATTATAAAAAAGATAATCTTA----ATACAAAA--AAAAG
gi|12 : aG-AGAAAA-CATGACATAGCATG--GCACATGATAATT-GAATCATCTTA----ATACAAAATGAAAA-ACAAGACCcaccta
gi|13 : TATTATACTGCCATCTTATT--------T--------------A--------CAG----------------C--AATGGGGTTTGTCACATATT--------------CTGACAACAT-----a
gi|15 : atcaTTTTATTGCCATCATATT--------T--------------A--------CAG----------------C--AATGG------------GTT--------------CTCACAACAT-----TA--GTT---ACAG---CCa
gi|16 : aatatTATTTTATTGCCGTCTTATT--------T--------------A--------CAG----------------C--AA---------------
gi|2 : tttataaTATTTTATTGCCTTCTTATT--------T--------------A--------AAA----------------A--AA---------------ATGGGGCGGGAGGCACATTCACC-CAT-----TT--GTT---ACGG---CACT-CCCCC-----ATA-ATA----TATGACAAATAATTG-AGAAGA-CATGACATGTCA-A-AATACATGATAAAAtg
gi|3 : atcaTATTTTATTGTCATCTTATT--------TTGTGGGTTTGGCC-A--------CAT----------------CTCGA---------------GTT--------------TTCACAT--T-----TATGATA---ACGG---TCCTACCTCT-----A-ATACATGTATATGACAAATGATTG-AGAAAA-CGCGACATAG-------CACGTGATAAAATCGATAATCTTGAATTATACAAAA-GAAAAAACAACAgtacatgtatacatagtgtgtacacagcaacaaaaa
gi|4 : TATTTTACTACTATTCTATT--------TTCCAGTGGGGTTAGA--------CCG----------------C--AA---------------GGT--------------CTCACAACGTAGTACTAA-GTT---ACAA---CCCTTCCCCTTATACA-A-ATA----TATGGCAAACAACTGGACAAAATCATGACATAGCATG--ACACATGATGAAAAGGATAATCa
gi|5 : gtcaATTGTATTGTCATCATATTGCCAGAAAT--------------AGGGCAGGGCAA----------------C--AA---------------GTT--------------TTTACAACAT-----T---GTT---AATG---CACT-CTCCT-----G-A-TA-----TATGACAAATACATG-ATAACA-CCTAACATG--ATGTAATATATGTTTTCAACG---ATCTTG----ATACAAAAAGGAAAAAAAATAaatta
gi|6 : TATTTTATTGCCATCTTATT--------T--------------A--------CAG----------------C--AA---------------ATT--------------CTCACAGCAT-----TA--GTT---CCTG---TTCT-CCACT-----A-A-AC-----TAGGACTATTTATTG-AGAAAA-CACGACTTGGCATATAATACATT-TAAAGAGGATAAACTTG----ATATAAAATGAAAAGAAAATACCCAC
gi|7 : TATTTTATTACCATCTTATT--------G--------------A--------CAG-------------------AA---------------ATAGGA-----------CTCAAAACAT-----TT--GAT---ACCGACCCCCT-CCCCT-----G-A-TA-----TGTGATGATTAAATG-AGAACA-TATGACATG--ATATAACA---GATATCAACACTGTTATTG----ATACAGAAGGAAAAAAAAa
gi|8 : taaccaTATTTTATTGCCATCTTATT--------T--------------A--------CAG----------------C--AA---------------ATT--------------CTCACAGCAT-----TA--GTT---CCTG---TTCT-CCACT-----A-A-AC-----TAGGACTATTTATTG-AGAAAA-CACGACTTGGCATATAATACATT-TAAGGAGGATAAACTTG----ATACAAAATGAAAAGAAAATACCCACca
gi|9 : TATTTTTTCACCATATCATT--------T--------------A--------CAA----------------C--AA---------------ATT--------------CTCACAATAT-----TA--GTT---AT-----CCCT---CCT-----A-A-AC-----TAT---------TCG-AG------ACAACATGGC--ATAACACATGAT-AAAAGTATAGTCTTG----ATACAAAATGAAAAGAAAATAC
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|14 ): TATTTTATTGCACTCTTATTTACATCAATGCGGTTGGGCTACAAATAATTGAGAAACATG