lowQualScore : 1111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 11111 22222222222222222222222 111111 1111111 111111 111111111 1111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 111 1 44444444444444444444444444444444 5555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555 1 2 333 4444 2 22 00000 1 1 88888888888888888888888 1 11 1 55555 666666666 22 1 111111 1 1 3333333 55 22 4 1 111111 1 11 22 7777 222 1 22222222 1 333 22222 11 333333333333 1111 4444444444444 222 1 1 000000000 1 22 44444444444 11 1 0000000000000000000000000000000000000000000000000000000000000000000 333333 111 1 3 22 1111111 11 22222222222222 555555555555555555555555555555555
lowQualScore : 2 99 777 3 0 1 44444444444444444444444444444444 2 1 3 3 3333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333 2 777 33 1 0 555 2222 0 2 4 77 3 4 4 00000 7 6 5 11111111111111111111111 6 6 7 22 7 22222 6 222222222 33 7 555555 7 5 6 0000000 77 6 33 0 5 6 555555 5 6 6 6 22 11 6 6666 444 5 66666666 0 3 3 2 222 4 2 66666 3 66 222222222222 5555 7 5 6 5555555555555 333 7 2 44 0 5 6 2 333333333 3 55 11 6 1 00000000000 55 1 66 3 1 2222222222222222222222222222222222222222222222222222222222222222222 77 000000 333 1 8 7 1 7 5 11 5 9999 4 777 6 3 7777 3 555 7777777 0 3 33 1 1 4 33333333333333 4444444 1 1 555555555555555555555555555555555
lowQualScore : . .. ... . . . ................................ . . . . ..................................................................................................................................... . ... .. . . ... .... . . . .. . . . ..... . . . ....................... . . . .. . ..... . ......... .. . ...... . . . ....... .. . .. . . . ...... . . . . .. .. . .... ... . ........ . . . . ... . . ..... . .. ............ .... . . . ............. ... . . .. . . . . ......... . .. .. . . ........... .. . .. . . ................................................................... .. ...... ... . . . . . . .. . .... . ... . . .... . ... ....... . . .. . . . .............. ....... . . .................................
lowQualScore : 2 22 333 1 6 6 88888888888888888888888888888888 9 4 1 2 8888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888 7 333 44 4 0 000 5555 0 5 0 55 0 0 0 00000 0 0 0 00000000000000000000000 0 0 0 00 0 00000 0 000000000 00 0 000000 0 0 0 0000000 00 0 00 0 0 0 000000 0 0 0 0 00 00 0 0000 000 0 33333333 7 3 7 5 000 0 5 55555 0 88 000000000000 7777 5 0 7 2222222222222 000 1 2 88 7 0 0 5 222222222 5 88 77 0 7 55555555555 77 0 00 3 0 0000000000000000000000000000000000000000000000000000000000000000000 99 333333 444 1 8 0 8 5 7 22 0 4444 4 888 0 6 2222 5 888 2222222 9 3 99 7 7 8 44444444444444 6666666 5 5 111111111111111111111111111111111
consensus : GAAAA--TCTTATTCCGGNGATAAGTATATTTTTGTTACACTAAGGGT-T--AT--TT----ATAAC-------C-----G-CAACCCTTAGTGTAAC-A-A-A-A--T-------A-----A---G--------------------------T--AAC-------ACANTAA--G--TTT----TG-NTANGAC--------------G-A----TAA-GTA--------T-------AT-T---TT--TGTTACACTAAGGGTTGACGATATGCGACATATTGTTGCAATATGTNACNCAATTTAGNAANTTGTCNACAA-----CAGACCTAATGTTTACATACTTGTTGGCCCTTATAC-TTAA----------------TGAAAGTTAATATGGTATAAATAATACAA-CCAACACGAAATGTAACACACACACCATATAAACATATTCCTA------TATTTAATCTAAGCAATTGTACAGTACAATTTCTTGATTTCATCAGAGATATAAAATACTATTATCTGTC-------TCATACATGTTCCTACCTAGTATATGAACAAAAGAACAGTTC-AACGTGTTACCTGTTCCCTTTTTAGCTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGAAAGAGAAAAATATCGAAACGACATGAATACCCCCTCCCTC---TATCTTTCTATTTTTCGCAAAC-CGTCCGAAGT-ATCTCGNTTCTGAACACGTGTATGNANCTTCATCAANATCGGAT-NAAAAT-AATGCCGGT-AAGCGTTGACAGCGATTT-TCTATTTTTAGTAACAATGACATTGACCTTGACCTGAAAAATCGTGAAACGCNAACGCATCCGAAGTATC-CTGTTCTGAACATCTGTGTA------ACTTGCATCGGATGNAAAATAATGCCGGTAAGCGTTGACAGCGATTTTCTATTT-TA-GT-A-CAGTGACATTGACCTTGACCTGAAAATCGTGACGTAC-GGAA-A-----A-----CGGA-C-------GGACGG-AC------------G----G-------------TACG--ACGGACGGACATGGGTAGCACTATATC---TCCCTCA--ACCANATAAATTGTATAAATTGTGTAATTTGCCATAATA-TGTAGGGATATTATAGAGAAGATGA-TTNCCT-AAAT----T-TTGT---TACATATTGCAAC--AATATGTCA---CAN-ATA-GCCCCTTAGTGT-AACA-A-A-A-T-----A----T-TT-------TTGTTACAC-T-AAG------G-----G-T-------GT---------CAACCCTTAGTGTA
Reference ( gi|1 ) : GAGAA--TCTTATTCCAGGGATAGGTATATCTTTGTTACACTAAGGGT-T--AT--TT----ATAAC-------T-----G-CAACCCTTAGTGTAAC-A-A-A-A--T-------A-----A---G--------------------------T--AAC-------ACAATAA--G--TTT----TG-ATAAGAC--------------G-A----TAA-GTA--------T-------AT-T---TT--TGTTACACTAAGGGTAGACGA-ATATGA---ATTGT----ATA-GTCATTCA--TTAGTAATTTATTTACAAAATTACAGACCAAACGTTTACATACTTGTTGGACCTTATGTATTAAAAATGTAAAAATGTATTAAAAATTAATTTGACATAAATTAT-CAAGCCAACACAAAAT-TAA-ATGTACACTTTATAATCATATTCCTAGTCCTATATTTTATCTAAGCAATTGTACAGTACAAGTTCTTGATTTCACCAGAGATATAAAATACTATTATCTGTCTCTCATTTCATACATGTTCCTACCTAGTATATG-TCGAAAATACAGTTCAAAAGTGTTACTT------TTTGTAGCTACAATTTAGTAATACCTCATGATTCATGACTAATCCCTTTCCAAAATAACCAAAACATTCACTGAAATAATGTTTTGTTTGTAAGACTTCTTACTTTTCTTTTTATAATTATCATTTTTCCAATCTTCCACAGCATATTTACAGTCACATTTGTTAGTTAAAATATACACGAAAAAAAGAGAGAAAAATATCAAAACGACATGAATGTCCCCCACCCCACACATCTTACAATTGTTCGCAAACTTGTCCGAGGT-ATCTTGGTTCTGAACACCTACATGAAGTTTCATCAAAATTGGAT-TAAAAG-AAGGGCAGTCAAGCGGTAGCGGTGATTT-TCTGCTTTTAGTAATGATGACATTGACCTTGACCCGAAAAATCGTGAAATGCAAACGCATCCGAATTATCTCTGTTCTGAACATCTGTGTATTTGTTACTTGCATCTGATGGGAAATAATGCCGGTAATTGTTGACAGCAATTTTCTATTT-TATGT-AACAGTGACATTGACCTTGACCTGAAAATCGTGATTTAC-GAAA-A-----A-----CAGA-A-------GGACAG-AC------------G----G-------------CACG--ACAGACGGACATGGGTAGCACTATATC---TCCCTCA--ACCATATAAATTGTATAAATTGTGAAATTTGCCATAATAATGCAGGGATATTATAGAGAAGATGA-TTAACT-AAAT----T-TTGT---TGCATATTGCAAC--AATATGTCA---CAA-ATA-GCCCTTTAGTGA-AACA-A-A-A-C-----A----T-TT-------TTGTTACAC-T-AAG------G-----G-T-------GT---------CAACCCTTAGTGTACCCA
gi|8 : GAAAA--TCTTATTGTGATGATAAATATATTTTTGTCACACTAAGGGT-T--
gi|12 : taacggttatttataaccacaacccttagtgtaacaaaaataagtttaaGAAAA--TCGTATTCCAAAGATAAGTATATTTTCGTTACACTAAGGGT-T--GT--TT----ACAAC-------T-----G-CAACCCTTgacgaatatgaattgtatagtcattcattaataatttgttaacaacagacctaatgtttacatacttgttggcccttatacttaatgaaagttaatatggtataaataatacaaccaacacgaaatgtaacacacacaccatataaacatattcctatatttaatctaagcaattgtacagtacaatttcttgatttcatcagagatataaaatactattatctgtctcatacatgttcctacctagtatatgaacaaaagaacagttcaacgtgttacctgttccctttttagct
gi|11 : nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaGAAAA--TCGTGTTTCGGCGACAAGTATATGTTTGTTTTACTAAGGGT-T--AT--TT----ATAAC-------C-----G-CAAACATTAGTGTAAG-G-A-A-A--T-------A-----A---G--------------------------T--
gi|2 : tnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaaattacacaaattaaagcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaGACAA--TCTTATTTCTTTGATAAATATAGTTTTGTTACACTAAGGGT-T--A
gi|18 : tagagtaatgctatattagtaatagcatcatcttgagttataattgtcagaaaaggaatacttatgttgcatggggaaggggggtcgagattcagggagaaaagggtcaataacaagttcatcaaaattagaataatgcataaatactttcatttgtcactcattaatagttgtatcctgtttctcagatgttcaactcttgaaagtgacatagcgcgctctagttttattttggttttaaaactgcttcattttgtcaccatcgttataaaagcattcatctaaaagtaggctgacatcgcaatatatcataaaatgtgttttatcttggacatttgtagttatggaacattactaatacaattatcttagtgaaaataaataacattaacgaagagtaagtagactcatatcatctcaaactcttgtttaaaaaacgtaaataaacaaacttatataaaattacgaatctcctttaaatcttcggttttccacttcattattttaagttatttaccagtgttaagaaaaccgtccaacaaagtttttctaagggttgtttnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaagaacatcgtacttctttgataaatatatttttgttacactaaggattatttnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaaAGAAATTCTTATTCCAGGGAAAGGAATAT-TTTGTTACACCAAGGGT-T--AT--TT----AT-AC-------C-----G-CAA
gi|10 : GGA--TTTTATGCC--GGAT-----TATCATGAT--CAATAATAGC-T--AT--GT----ATG-C-------TTTGTGG-CAACCCTTAGTATAAC-A-A-A-A--A-------C-----ATTTT--------------------------T--GAT-------ACACTAA--G--GTTACGGTG-TCAACCCT-------------T-A----GAA-ACA----------------AT-T---GT--TGTTACACTAAGCGTA
gi|2 : tattgtatttatattcgtcataccattgtttatagaatgttatggttataaaaaagcGATAAATATATTTTTGTTACACTAAGGAT-T--AT--TTNNNNNNNNN-------N-----N-NNNNNNNNNNNNNNNN-N-N-N-N--N-------N-----N---N--------------------------N--NNN-------NNNNNNN--N--NNN----NN-NNAAGACAATCTTATTTCTTTG-A----TAA-ATA--------T-------AG-T---TT--TGTTACACTAAGGGTtgttttgttcatgtattgacatttgattataaaaagggttcatttagtgtaacatttcttttagaaatttaattatccctgctatatgtacgaaattggagcatatagtttt
gi|13 : tagagtaatgctatattagtaatagcatcatcttgagttataattgtcagaaaaggaatacttatgttgcatggggaaggggggtcgagattcagggagaaaagggtcaataacaagttcatcaaaattagaataatgcataaatactttcatttgtcactcattaatagttgtatcctgtttctcagatgttcaactcttgaaagtgacatagcgcgctctagttttattttggttttaaaactgcttcattttgtcaccatcgttataaaagcattcatctaaaagtaggctgacatcgcaatatatcataaaatgtgttttatcttggacatttgtagttatggaacattactaatacaattatcttagtgaaaataaataacattaacgaagagtaagtagactcatatcatctcaaactcttgtttaaaaaacgtaaataaacaaacttatataaaattacgaatctcctttaaatcttcggttttccacttcattattttaagttatttaccagtgttaagaaaaccgtccaacaaagtttttctaagggttgtttnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaagaacatcgtacttctttTAGGT-T-TTTTCGTTACACTTAGGGT-T--AC----------GGT-------T-----G-CGATCCTTAGTGTAAC-A-A-A-A--T-------G-----G---G--------------------------T--ta
gi|3 : ggtaactcttagtgaaacaaaacccctATAT-TTTGTTACACTAAGGGTCC--AT--AT----GTGACATATTGTT-----G-CAA----TA-TGTAAC-A-A-A-ATTT-------A-----G---G--------------------------T--AAtttgttacacttaggaccgcaacgtaactcttagtgtaacaacacttgttacactaagcgtatgtttggcacatgtatagacatttgataataaaacgggttctctaagtaaaaccttttttaactagaaatttatttatccctgctatgaaatg
gi|6 : atttattgccgcaaccgtaaatgacgttgaccttgacccgaaaatcgtgaaacacaaacgcatctgaagtctcactgttctgaacatctgtgtatcttacattggaggggaaataatactggtaagcgttgacagcgatttatcttagtgacattgaccttaacctgaaaatcgtgatgtacggaagaacggacggacagacggataggcgaacggtacgacggacggacatgggtagcactatactccctcaccaccacacccaatggcaatttcaaggctgttgcataaacaatatgtatcagtattaaacatataaattgtataaattgtgtaatttgccataatatgtagggatgttatagagaagatgaATGTTTTTGTAACACTAAGGAT-T--GC--G-----ATGAC----------------AACCCTTAATGTAAC-A-A-A-A--ttacactaagggttgcggtgtcaacccctggtgtaacagaaactgattgacaccgcaacccttagtgtaacagttgttacaattgttactgtttcactaagggttgcaacagacgtggcaaccagtacttacaagaatttaaacaatcatatattctaaacgtagacaatgtatcgtgaatgctatacagtatagatataagaacttgtaacttgtaagtcgaaataaacttctgtattt
gi|5 : ctcttagtgtaacacaatcagtATATTTTTGTTACACTTAGGGT-T------------------------------G-CG-------GTGTAAC-ATA-A-AC-T-------A-----ATT-G--------------------------T--GTT-------ACACTAA--GGGTTG----CG-GTGTAAC----------------A----TAA-AC---------T-------AA-T---TT--TGTTACACTAAGGGTtttgttacactaaggggcaatatgtgacatattgttgcaatttgtaataaaatttagaaaatcgtcttctctataatatccctacatattatggcaaattacaaatgtatctgtttaatactgatacgtattgttaatgcaactgccttgaaatgggggtggcatggggagggttggtgaggggctaatatagtgctacccatgtccatctgttgtaccatccgtccatccgtctgtccacccgttgttctgtacataacaatttcagttacggtcagtatcactgctactataaatagaaaatccctgtcaacgtttacaagtattattttgcatcggata
gi|9 : atttgcatcggatgcaaagtaatacccgtaagcgttgacaccgattttctatgacattgaccttgtcctaaaatcgtgacgtacagaagaacgggcggacagacggataggcaagacggtatgacggacggacatgggtagcaatatatcctcaccactgcaacccatttcaaagcggttgcacggttgcgtaaacaatatatatcagaattaaacagataaattgtgtaatttgccatactatgtagggatattatagaaaagataatttcctaaattgtgttacatattgcaacaatatgtcgcatatcgccccttggtgtaacaaaATATGTTTGTTAAACTAAGGGT-TGCAG--TT----AT-------------------AACCCCTAGTGTTAC-A-A-ATA--T--------------------------------------------T--GA--------------------TTT----TG--TAGGGT--------------A-A----CAA---A--------T-------AT-TGAGTT--TGTTACACTAAGGGtgcggaatcaacccttagtgtaacaattgtt
gi|10 : ggacagtacgacggacggacggagatgggtagcactatatcccatcccattttaagacggtggtttaaacaacacgtaacaacattaaacaaataaattgtataaattgtgtaatttgctataatatatagagatatcatagagaagttgagttctgaaattttgttacatattgccacttagtttaacaaaatatgtttttaacaaaATGTTTTTGTTATACTAAGGGT-T--atgttgttacattaaagccacaaagcatttacacacttgatatagtata
gi|8 : tattgtatttatattcgtcataccattgtttatagaatgttatggttataaaaaagcggattttatgccggattatcatgatcaataatagctatgtatgctttgtggcTATTTTTGTTACACTAAGGGT-T--GTGGTT----ATAAA-------T--------AACCGTTAttttgatacactaaggttacggtgtcaacccttagaaacaattgttgttacactaagcgtatgttttgttcatgtattgacatttgattataaaaagggttcatttagtgtaacatttcttttagaaatttaattatccctgctatatgtacgaaattggagcatatagtttt
gi|9 : ATATTTGTAACACTAGGGGT-T--AT----------AAC-------T-----G-CAACCCTTAGTTTAAC-A-A-A------------------------------------------------------C-------ATA---------TTT----TG-TTAA-------------------------AA-ACA--------T-------AT-T---T---TGTTAAACTAAGagtttaagaaaatcttattgtgatgataaatatatttttgtcacactaagggttgacgaatatgaattgtatagtcattcattaataatttgttaacaacagacctaatgtttacatacttgttggcccttatacttaatgaaagttaatatggtataaataatacaaccaacacgaaatgtaacacacacaccatataaacatattcctatatttaatctaagcaattgtacagtacaatttcttgatttcatcagagatataaaatactattatctgtctcatacatgttcctacctagtatatgaacaaaagaacagttcaacgtgttacctgttccctttttagct
gi|3 : ggacagtacgacggacggacggagatgggtagcactatatcccatcccattttaagacggtggtttaaacaacacgtaacaacattaaacaaataaattgtataaattgtgtaatttgctataatatatagagatatcatagagaagttgagttctgaaattttgttacatattgccaTTTCTGTTACACCAGGGGT-T--G---------ACA-C-------C-----G-CAACCCTTAGTGTAAtgattttgtagggtaacaaatattgagtttgttacactaagggatgttgttacattaaagccacaaagcatttacacacttgatatagtata
gi|6 : atttattgccgcaaccgtaaatgacgttgaccttgacccgaaaatcgtgaaacacaaacgcatctgaagtctcactgttctgaacatctgtgtatcttacattggaggggaaataatactggtaagcgttgacagcgatttatcttagtgacattgaccttaacctgaaaatcgtgatgtacggaagaacggacggacagacggataggcgaacggtacgacggacggacatgggtagcactatactccctcaccaccacacccaatggcaatttcaaggctgttgcataaacaatatgtatcagtattaaacatataaattgtataaattgtgtaatttgccataatatgtagggatgttatagagaagatgattacctaaattttgttacatattgcaacaatatgtcacatatggacccttagtgtaacaaaatatTTTTTGTTACATTAAGGGT-T--GT--C--------AT-------C-----G-CAATCCTTAGTGTTAC-A-A-A-A--ctgattgacaccgcaacccttagtgtaacagttgttacaattgttactgtttcactaagggttgcaacagacgtggcaaccagtacttacaagaatttaaacaatcatatattctaaacgtagacaatgtatcgtgaatgctatacagtatagatataagaacttgtaacttgtaagtcgaaataaacttctgtattt
gi|5 : ctcttagtgtaacacaatcagTTTGTTACACTAAGGGT-T--GC--------GGAAT---------------CAACCCTTAGTGTAAC-A-A-acattttgttacactaaggggcaatatgtgacatattgttgcaatttgtaataaaatttagaaaatcgtcttctctataatatccctacatattatggcaaattacaaatgtatctgtttaatactgatacgtattgttaatgcaactgccttgaaatgggggtggcatggggagggttggtgaggggctaatatagtgctacccatgtccatctgttgtaccatccgtccatccgtctgtccacccgttgttctgtacataacaatttcagttacggtcagtatcactgctactataaatagaaaatccctgtcaacgtttacaagtattattttgcatcggata
gi|13 : atttgcatcggatgcaaagtaatacccgtaagcgttgacaccgattttctatgacattgaccttgtcctaaaatcgtgacgtacagaagaacgggcggacagacggataggcaagacggtatgacggacggacatgggtagcaatatatcctcaccactgcaacccatttcaaagcggttgcacggttgcgtaaacaatatatatcagaattaaacagataaattgtgtaatttgccatactatgtagggatattatagaaaagataatttcctaaattgtgttacatattgcaacaatatgtcgcatatcgccccttggtgtaacaaaatatttttgttacacttagggttgcggtgtaacataaactaattgtgttacactaagggttgcggtgtaacataaactaatTTTGTTACACTAAGGAT-C--GC----------AAC-------C-----G-TAACCCTAAGTGTAAC-G-A-A-A----------A---------------------------------------AAC-------CTAAGGG--G--TTT----TG-ttgtt
gi|5 : ggtaactcttagtgaaaTTGTTACACTAAGGGT-TG-AT--T---------C-------C-----G-CAACCCTTAGTGTAAC-A-A-A-A--T-------T-----A---GTTTATGTTACACCGCAACCCTTAGTGT--AAC-------ACAATTA--G--TTTA---TG-TTACACC--------------GCAACCCTAA-GTG--------TAACAAAAATAT---TT--TGTTACACCAAGG---GGCGATATGCGACATATTGTTGCAATATGTAACACAATTTAGGAAATTATCTatgggttttgttacacttaggaccgcaacgtaactcttagtgtaacaacacttgttacactaagcgtatgtttggcacatgtatagacatttgataataaaacgggttctctaagtaaaaccttttttaactagaaatttatttatccctgctatgaaatg
gi|3 : atttgcatcggatgcaaagtaatacccgtaagcgttgacaccgattttctatgacattgaccttgtcctaaaatcgtgacgtacagaagaacgggcggacagacggataggcaagacggtatgacggacggacatgggtagcaatatatcctcaccactgcaacccatttcaaagcggttgcacggttgcgtaaacaatatatatcagaattaaacagataaattgtgtaatttgccatactatgtagggatattatagaaaTTACACTAAGGGT-T--GC-----------GG-------T-----GTCAACCCCTGGTGTAAC-A-G-A-AACT-------G-----A---T--------------------------T--GAC-------ACCGCAA--C--CCT----TA-GTGTAAC--------------A-G----TTG-TTA--------CA------AT-TG--TTACTGTTTCACTAAGGGTttgtt
gi|11 : atttattgccgcaaccgtaaatgacgttgaccttgacccgaaaatcgtgaaacacaaacgcatctgaagtctcactgttctgaacatctgtgtatcttacattggaggggaaataatactggtaagcgttgacagcgatttatcttagtgacattgaccttaacctgaaaatcgtgatgtacggaagaacggacggacagacggataggcgaacggtacgacggacggacatgggtagcactatactccctcaccaccacacccaatggcaatttcaaggctgttgcataaacaatatgtatcagtattaaacatataaattgtataaattgtgtaatttgccataatatgtagggatgttatagagaagatgattacctaaattttgttacatattgcaacaatatgtcacatatggacccttagtgtaacaaaatatTTACACTAATGTT-T--GCGGTT----ATAAA-------T--------AACCCTTAGTAAAAC-A-A-ACA--T-------A-----tgcaacagacgtggcaaccagtacttacaagaatttaaacaatcatatattctaaacgtagacaatgtatcgtgaatgctatacagtatagatataagaacttgtaacttgtaagtcgaaataaacttctgtattt
gi|15 : tnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaaattacacaaattaaagcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnagaaaatcgtgtttcggcgacaagtaTTACATTAAGG------AT--TG----ACA-C-------C-----G-CAACCTTCAGTGTAAC-A-A-A-ggaaataagt
gi|8 : TAACGGT-T--AT--TT----ATAAC-------C-----A-CAACCCTTAGTGTAAC-A-A-A-AA-T-------A-----A---G--------------------------TTTAAG-------A----AA--A--TCT----TA-TTGTGAT--------------G-A----TAA-ATA--------T-------AT-T---TT--TGTCACACTAAGGGTTGACGA-ATATGA---ATTGT----ATA-GTCATTCA--TTAATAATTTGTTAACAA-----CAGACCTAATGTTTACATACTTGTTGGCCCTTATAC-TTAA----------------TGAAAGTTAATATGGTATAAATAATACAA-CCAACACGAAATGTAACACACACACCATATAAACATATTCCTA------TATTTAATCTAAGCAATTGTACAGTACAATTTCTTGATTTCATCAGAGATATAAAATACTATTATCTGTC-------TCATACATGTTCCTACCTAGTATATGAACAAAAGAACAGTTC-AACGTGTTACCTGTTCCCTTTTTAGCTttgttacactaagcatatgtttgatacatgtattgacatttgattatacaacagattcagttagggttataatgtttgttcaactagaaatttatcctgctatggaatggggacatatggtgt
gi|12 : AAGGGT-TGCAG--TT----GTAA--------------A-CAACCCTTAGTGTAACGA-A-A-A--T-------A-----
gi|8 : nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnagaaaatcgtattccaaagataagta--AT--TC----ATATT-------C-----GTCAACCCTTAGTGTGACAA-A-A-A--T-------ATATTTA---T--------------------------C--ATC-------ACAATAA--GA-TTT----TC-TTAA-AC---------------------T--------------T-------AT-T---TT--TGTTACACTAAGGGT
gi|4 : taacggttatttataaccaca--TT----GTCAC-------C-----G-CAACTGTTAGTGTAAC-A-A-A-A--tgtatagtcattcattaataatttgttaacaacagacctaatgtttacatacttgttggcccttatacttaatgaaagttaatatggtataaataatacaaccaacacgaaatgtaacacacacaccatataaacatattcctatatttaatctaagcaattgtacagtacaatttcttgatttcatcagagatataaaatactattatctgtctcatacatgttcctacctagtatatgaacaaaagaacagttcaacgtgttacctgttccctttttagct
gi|18 : agaaagagaaaaatatcgaaacgacatgaataccccctccctctatctttctattttttgcaaaggtgatcttgactcaagaatccataagcgcaaactcgtccgaagtatattgtttctgaacacgtgtatgaagtttcatcaaaattgtattaaaataaggtcggtcgagcggttactgtgcttttctgctataagtaacgatgactgactttgaccagaaagtcgtgaaacgctaacgtattcaaagtatctctgttctgaacatctgtaacttgcatgggatggaaaataatgccggtaaacgttgaaatcgattttctattttgagtaactgtgacgttgaccttgacctgaaaatcgttacgtacggaaggacggatggacgatacgcaaaagacggacatgggtagcactatatcccattcaccaccttaccccaacccccatgtcaagccggttgcataaataatacgtatcggtattaaacagatgaattgtataaattgtgtaatttgtcataatatgtagagataatatagagaagatgatttccttgattttgttacatatttcaacaatatgtcacatatcgcccttaagtgtaacaaaatatT----ATAAA-------T--------AACCCTTGGTGTAAC-A-A-A-A--T-------A-----gggagactttgttagtaaacgttttattaaatg
gi|3 : agaaattcttattccagggaaaggaaAC-------C-----G-CAACCCTTAGTGTAAC-A-ccgcaa
gi|6 : atttattgccgcaaccgtaaatgacgttgaccttgacccgaaaatcgtgaaacacaaacgcatctgaagtctcactgttctgaacatctgtgtatcttacattggaggggaaataatactggtaagcgttgacagcgatttatcttagtgacattgaccttaacctgaaaatcgtgatgtacggaagaacggacggacagacggataggcgaacggtacgacggacggacatgggtagcactatactccctcaccaccacacccaatggcaatttcaaggctgttgcataaacaatatgtatcagtattaaacatataaattgtataaattgtgtaatttgccataatatgtagggatgttatagagaagatgattacctaaattttgttacatattgcaacaatatgtcacatatggacccttagtgtaacaaaatatttacactaagggttgcggtgtcaacccctggtgtaacagaaactgattgacAT-------T-----G-C--CCCTTAGTGTAAC-A-A-A-A--T-------GTTTT-T---G--------------------------T--AAC-------AC--TAA--GGATTG----CG-AT--GAC--------------A-ACCCTTAATGTAACAAAAACT-------GA-T---TG--TGTTACACTAAGAGgttgttacaattgttactgtttcactaagggttgcaacagacgtggcaaccagtacttacaagaatttaaacaatcatatattctaaacgtagacaatgtatcgtgaatgctatacagtatagatataagaacttgtaacttgtaagtcgaaataaacttctgtattt
gi|3 : -------T-----G-CAACCCTTAGTGAAAC-A-GTA-A--C-------A-----ATT-G--------------------------T--AACAACTGTTACACTAAGGG--TTG----CG-GT--GTC--------------A-A----TCA-G-------------------T-T---TC--TGTTACACCAGGGGTTGACatgtgacatattgttgcaatttgtaataaaatttagaaaatcgtcttctctataatatccctacatattatggcaaattacaaatgtatctgtttaatactgatacgtattgttaatgcaactgccttgaaatgggggtggcatggggagggttggtgaggggctaatatagtgctacccatgtccatctgttgtaccatccgtccatccgtctgtccacccgttgttctgtacataacaatttcagttacggtcagtatcactgctactataaatagaaaatccctgtcaacgtttacaagtattattttgcatcggata
gi|16 : atttattgccgcaaccgtaaatgacgttgaccttgacccgaaaatcgtgaaacacaaacgcatctgaagtctcactgttctgaacatctgtgtatcttacattggaggggaaataatactggtaagcgttgacagcgatttatcttagtgacattgaccttaacctgaaaatcgtgatgtacggaagaacggacggacagacggataggcgaacggtacgacggacggacatgggtagcactatactccctcaccaccacacccaatggcaatttcaaggctgttgcataaacaatatgtatcagtattaaacatataaattgtataaattgtgtaatttgccataatatgtagggatgttatagagaagatgattacctaaattttgttacatattgcaacaatatgtcacatatggacccttagtgtaacaaaatatttacactaagggttgcggt-CAACCCTTAGTGTAAC-A-acagacgtggcaaccagtacttacaagaatttaaacaatcatatattctaaacgtagacaatgtatcgtgaatgctatacagtatagatataagaacttgtaacttgtaagtcgaaataaacttctgtattt
gi|2 : atgcgatgtAACCCTTAGTGTAAC-A-A-A-A--tttgttacatgtattggcatttgattataaaacaggttcatttagtgtaacaattttttttttttaaacttagaaatttatttatccct
gi|3 : tagagtaatgctatattagtaatagcatcatcttgagttataattgtcagaaaaggaatacttatgttgcatggggaaggggggtcgagattcagggagaaaagggtcaataacaagttcatcaaaattagaataatgcataaatactttcatttgtcactcattaatagttgtatcctgtttctcagatgttcaactcttgaaagtgacatagcgcgctctagttttattttggttttaaaactgcttcattttgtcaccatcgttataaaagcattcatctaaaagtaggctgacatcgcaatatatcataaaatgtgttttatcttggacatttgtagttatggaacattactaatacaattatcttagtgaaaataaataacattaacgaagagtaagtagactcatatcatctcaaactcttgtttaaaaaacgtaaataaacaaacttatataaaattacgaatctcctttaaatcttcggttttccacttcattattttaagttatttaccagtgttaagaaaaccgtccaacaaagtttttctaagggttgtttnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaagaacatcgtacttctttgataaatatatttttgttacactaaggattatttnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaagacaatcttatttctttgataaatatagACCCTTAGTGTAAC-A-A-A-A--T-------A-----a
gi|10 : atttattgccgcaaccgtaaatgacgttgaccttgacccgaaaatcgtgaaacacaaacgcatctgaagtctcactgttctgaacatctgtgtatcttacattggaggggaaataatactggtaagcgttgacagcgatttatcttagtgacattgaccttaacctgaaaatcgtgatgtacggaagaacggacggacagacggataggcgaacggtacgacggacggacatgggtagcactatactccctcaccaccacacccaatggcaatttcaaggctgttgcataaacaatatgtatcagtattaaacatataaattgtataaattgtgtaatttgccataatatgtagggatgttatagagaagatgattacctaaattttgttacatattgcaacaatatgtcacatatggACGCTTAGTGTAAC-A-ACA-A--TTGTTTCTA-----A---GGGT-----------------------T--GAC-------ACCGTAA--C--CTTAG--TGTAT----C--------------A-A-----AA---A--------T-------GT-T---TT--TGTTATACTAAGGGTtttacactaagggttgcggtgtcaacccctggtgtaacagaaactgattgacaccgcaacccttagtgtaacagttgttacaattgttactgtttcactaagggttgcaacagacgtggcaaccagtacttacaagaatttaaacaatcatatattctaaacgtagacaatgtatcgtgaatgctatacagtatagatataagaacttgtaacttgtaagtcgaaataaacttctgtattt
gi|6 : tattgtatttatattcgtcataccattgtttatagaatgttatggttataaaaaagcggattttatgccggattatcatgatcaataatagctatgtatgctttgtggcaTAACAC--------------A-A----TCA-GT--------------------T---TT--TGTTACATTAAGGGTatgttttgttcatgtattgacatttgattataaaaagggttcatttagtgtaacatttcttttagaaatttaattatccctgctatatgtacgaaattggagcatatagtttt
gi|11 : ctcttagtgGGC--------------G-A----CAA-GTA--------T-------AT-G---TT--TGTTTTACTAAGGGTtgtcatcgcaatccttagtgttacaaaaacattttgttacactaaggggcaatatgtgacatattgttgcaatttgtaataaaatttagaaaatcgtcttctctataatatccctacatattatggcaaattacaaatgtatctgtttaatactgatacgtattgttaatgcaactgccttgaaatgggggtggcatggggagggttggtgaggggctaatatagtgctacccatgtccatctgttgtaccatccgtccatccgtctgtccacccgttgttctgtacataacaatttcagttacggtcagtatcactgctactataaatagaaaatccctgtcaacgtttacaagtattattttgcatcggata
gi|12 : tnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaaattacacaaattaaagcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnagaaaatcgtgtttc--------------G-A----TAA-GTA--------T-------AT-T---TT--CGTTACACTAAGGGTtatttataaccgcaaacattagtgtaaggaaataagt
gi|16 : nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnagaaaatcgtattccaaa--TGTTACACTAAGGGTTGACtgtttacaactgcaaccctt
gi|4 : atgcgatAGAAAGAGAAAAATATCGAAACGACATGAATACCCCCTCCCTC---TATCTTTCTATTTTTTGCAA---------AGGTGATCTTGACTCtttgttacatgtattggcatttgattataaaacaggttcatttagtgtaacaattttttttttttaaacttagaaatttatttatccct
gi|4 : CGCAAACTCGTCCGAAGT-ATATTGTTTCTGAACACGTGTATGAAGTTTCATCAAAATTGTAT-TAAAAT-AAGGTCGGTCGAGCGGTTACTGTGCTTT-TCTGCTATAAGTAACGATGAC--TGACTTTGACCAG-AAAGTCGTGAAACGCTAACGTATTCAAAGTATCTCTGTTCTGAACATCTGTA--------ACTTGCATGGGATGGAAAATAATGCCGGTAAACGTTGAAATCGATTTTCTATTT-TGAGT-AACTGTGACGTTGACCTTGACCTGAAAATCGTTACGTAC-GGAA--------------GGA-C-------GGATGG-AC------------G----A-------------TACGCAAAAGACGGACATGGGTAGCACTATATC---CCATTC---ACCAaagaatccataagcgcaaactcgtccgaagtatattgtttctgaacacgtgtatgaagtttcatcaaaattgtattaaaataaggtcggtcgagcggttactgtgcttttctgctataagtaacgatgactgactttgaccagaaagtcgtgaaacgctaacgtattcaaagtatctctgttctgaacatctgtaacttgcatgggatggaaaataatgccggtaaacgttgaaatcgattttctattttgagtaactgtgacgttgaccttgacctgaaaatcgttacgtacggaaggacggatggacgatacgcaaaagacggacatgggtagcactatatcccattcaccaccttaccccaacccccatgtcaagccggttgcataaataatacgtatcggtattaaacagatgaattgtataaattgtgtaatttgtcataatatgtagagataatatagagaagatgatttccttgattttgttacatatttcaacaatatgtcacatatcgcccttaagtgtaacaaaatatttttgttacactaacagttgcggtgacaagggagactttgttagtaaacgttttattaaatg
gi|3 : agaaagagaaaaatatcgaaacgacatgaataccccctccctctatctttctattttttgcaaaggtgatcttgactcaagaatccataagCACAAACGCATCTGAAGT-CTCACTGTTCTGAACATCTG--TGTATCTT-----ACATTGGAG-GGGAAA-TAATACTGGTAAGCGTTGACAGCGATTTATCT-----TAGT------GACATTGACCTTAACCTG-AAAATCGTGAccttaccccaacccccatgtcaagccggttgcataaataatacgtatcggtattaaacagatgaattgtataaattgtgtaatttgtcataatatgtagagataatatagagaagatgatttccttgattttgttacatatttcaacaatatgtcacatatcgcccttaagtgtaacaaaatatttttgttacactaacagttgcggtgacaagggagactttgttagtaaacgttttattaaatg
gi|7 : atttattgccgcaaccgtaaatgacgttgaccttgacccgaaaatcgtgaaaATCGGATGCAAAAT-AATGCCGGT-AAGCGTTGACAGCGATTT-TCTATTTTTATCAACAATGGCATTAACCTTAACCTT--AAATCGTGAtgtacggaagaacggacggacagacggataggcgaacggtacgacggacggacatgggtagcactatactccctcaccaccacacccaatggcaatttcaaggctgttgcataaacaatatgtatcagtattaaacatataaattgtataaattgtgtaatttgccataatatgtagggatgttatagagaagatgattacctaaattttgttacatattgcaacaatatgtcacatatggacccttagtgtaacaaaatatttacactaagggttgcggtgtcaacccctggtgtaacagaaactgattgacaccgcaacccttagtgtaacagttgttacaattgttactgtttcactaagggttgcaacagacgtggcaaccagtacttacaagaatttaaacaatcatatattctaaacgtagacaatgtatcgtgaatgctatacagtatagatataagaacttgtaacttgtaagtcgaaataaacttctgtattt
gi|5 : tgaagatctgtttaacttgcATCGGAT-GCAAAGTAATACCCGT-AAGCGTTGACACCGATTT-TCT-------------ATGACATTGACCTTGTCCT--AAAATCGTGACGTACAGAcgtacggaagaaggggcggacactcggatagacgaacagtacgacggacggacttaggtagcattatacccccaaccccacccagcccttctcaagcttgcataaacaatacgtatcagtattaaacagataagttgtataaactgtgtaatttgccataatatgtagaaaaggtgattacctaagttttgttatatattgcaacaatatgtctcatatcgcaccttaatgtaacacaatattttttttacattaagggtttaatgctttcactggaaatagttattgatactgtt
gi|14 : atttgcAAAAT-AATGCCGGT-AAGCATTGACAGCGATTT-TCTATTTTAAGTATCAGTGATATTGACCTTGACCTG-CAAATCGTAAagaacgggcggacagacggataggcaagacggtatgacggacggacatgggtagcaatatatcctcaccactgcaacccatttcaaagcggttgcacggttgcgtaaacaatatatatcagaattaaacagataaattgtgtaatttgccatactatgtagggatattatagaaaagataatttcctaaattgtgttacatattgcaacaatatgtcgcatatcgccccttggtgtaacaaaatatttttgttacacttagggttgcggtgtaacataaactaattgtgttacactaagggttgcggtgtaacataaactaattttgttacactaagggttgcggaatcaacccttagtgtaacaattgtt
gi|6 : cattgaccttgacttgaaaatcgtgaaacgcctccgcatctgtagtatcatctgtgtaacttgcatcggacggAAACGTTGACAGGGATTT-TCTATTTATAGTAGCAGTGATACTGACCGTAA-CTGAAAcgtacggaaaaatggacagacaaacgtatgggcgaacggtacgacagacggacaggtgtagcactatatttccccat
gi|3 : ctcttagtgtaacacaatcagtttttgttacattaagggttgtcatcgcaatccttagtgttacaaaaacattttgttacactaaggggcaatatgtgacatattgttgcaatttgtaataaaatttagaaaatcgtcttctctataatatccctacatattatggcaaattacaaatgtatctgtttaatactgatacgtattgttaatgcaactgccttgaaatgggggtggcatggggagggttggtgaggggctaatatagtgctacccatgtccatctgttgtaccatccgtccatccgtctgtccacccgttgttctgtacataacaaGTAA--ATGACGTTGACCTTGACCCGAAAA-TCGTGAAACACAAACGCATCTGAAGTCTCACTGTTCTGAACATCTGTGTAT------CTTACATTGGAGGGGAAATAATACTGGTAAGCGTTGACAGCGATTT---ATCT-TA--------GTGACATTGACCTTAACCTGAAAATCGTGATGTAC-GGAAGA-----A-----CGGA-C-------GGACAG-AC------------G----GATAGGCGAACGG-TACG--ACGGACGGACATGGGTAGCACTATA-C---TCCCTCACCACCACAacaagtattattttgcatcggata
gi|14 : atttattgccgcaaccCATTGACCTTGACTTGAAAA-TCGTGAAACGCCTCCGCATCTGTAGTATC------------ATCTGTGTA------ACTTGCATCGGACGGAAAATAATGCCGGTAAGCATTGACAGCGATTTTCTATTT-TAAGT-ATCAGTGATATTGACCTTGACCTGCAAATCGTAACGTAC-GGAA-AAATGGA-----CAGACAAACGTATGGGCGA-AC------------G----G-------------TACG--ACAGACGGACAGGTGTAGCACTATATT---TCCCcccaatggcaatttcaaggctgttgcataaacaatatgtatcagtattaaacatataaattgtataaattgtgtaatttgccataatatgtagggatgttatagagaagatgattacctaaattttgttacatattgcaacaatatgtcacatatggacccttagtgtaacaaaatatttacactaagggttgcggtgtcaacccctggtgtaacagaaactgattgacaccgcaacccttagtgtaacagttgttacaattgttactgtttcactaagggttgcaacagacgtggcaaccagtacttacaagaatttaaacaatcatatattctaaacgtagacaatgtatcgtgaatgctatacagtatagatataagaacttgtaacttgtaagtcgaaataaacttctgtattt
gi|7 : TGAAGATCTGTTTA------ACTTGCATCGGATGCAAAATAATGCCGGTAAGCGTTGACAGCGATTTTCTATTT-T-TATCAACAATGGCATTAACCTTAACCTTAAA-TCGTGACGTAC-GGAA-G-----AAGGGGCGGACACTC----GGATAG-AC------------GAACAG-------------TACG--ACGGACGGACTTAGGTAGCATTATA------CCCCCA--ACCcat
gi|5 : ATTTGCATCGGATGCAAAGTAATACCCGTAAGCGTTGACACCGATTTTCTAT---------------GACATTGACCTTGTCCT-AAAATCGTGACGTACAGAAG-A-----A-----CGGG-C-------GGACAG-AC------------G----GATAGGCAAGACGGTATG--ACGGACGGACATGGGTAGCAATATAT------CCTC---ACCAccacccagcccttctcaagcttgcataaacaatacgtatcagtattaaacagataagttgtataaactgtgtaatttgccataatatgtagaaaaggtgattacctaagttttgttatatattgcaacaatatgtctcatatcgcaccttaatgtaacacaatattttttttacattaagggtttaatgctttcactggaaatagttattgatactgtt
gi|6 : ATCCGATGCAAAATAATACTTGTAAACGTTGACAGGGATTTTCTATTTATA-GT-AGCAGTGATACTGACCGTAA-CTG-AAATTGTTATGTACAGAAC-A-----A-----CGGG-T-------GGACAG-ACGGATGGACGGATG----G-------------TACA--ACAGATGGACATGGGTAGCACTATATTAG-CCCCTC---ACCActgcaacccatttcaaagcggttgcacggttgcgtaaacaatatatatcagaattaaacagataaattgtgtaatttgccatactatgtagggatattatagaaaagataatttcctaaattgtgttacatattgcaacaatatgtcgcatatcgccccttggtgtaacaaaatatttttgttacacttagggttgcggtgtaacataaactaattgtgttacactaagggttgcggtgtaacataaactaattttgttacactaagggttgcggaatcaacccttagtgtaacaattgtt
gi|9 : ctcttagtgtaacacaatcagtttttgttacattaagggttgtcatcgcaatccttagtgttacaaaaacattttgttacactaaggggcaatatgtgacatattgttgcaatttgtaataaaatttagaaaatcgtcttctctataatatccctacatattatggcaaattacaaatgtatctgtttaatactgatacgtattgttaatgcaactgccttgaaatgggggtggcatggggagggt-------GGACAGTAC------------G----A-------------CG-G--ACGGACGGAGATGGGTAGCACTATATCCCATCCCa
gi|4 : TTA--AACAGATGAATTGTATAAATTGTGTAATTTGTCATAATA-TGTAGAGATAATATAGAGAAGATGA-TTTCCT-TGAT----T-TTGT---TACATATTTCAAC--AATATGTCA---CAT-ATC-GCCCTTAAGTGT-AACA-A-A-A-T-----A----T-TT-------TTGTTACAC-T-AAattttaagacggtggtttaaacaacacgtaacaacattaaacaaataaattgtataaattgtgtaatttgctataatatatagagatatcatagagaagttgagttctgaaattttgttacatattgccacttagtttaacaaaatatgtttttaacaaaatatgtttgttaaactaagggttgcagttataacccctagtgttacaaatattgattttgtagggtaacaaatattgagtttgttacactaagggatgttgttacattaaagccacaaagcatttacacacttgatatagtata
gi|3 : agaaagagaaaaatatcgaaacgacatgaataccccctccctctatctttctattttttgcaaaggtgatcttgactcaagaatccataagcgcaaactcgtccgaagtatattgtttctgaacacgtgtatgaagtttcatcaaaattgtattaaaataaggtcggtcgagcggttactgtgcttttctgctataagtaacgatgactgactttgaccagaaagtcgtgaaacgctaacgtattcaaagtatctctgttctgaacatctgtaacttgcatgggatggaaaataatgccggtaaacgttgaaatcgattttctattttgagtaactgtgacgttgaccttgacctgaaaatcgttacgtacggaaggacggatggacgatacgcaaaagacggacatgggtagcactatatcccattcaccaccttaccccaacccccatgtcaagccggttgcataaataatacgtatcggtaTTA--AACATATAAATTGTATAAATTGTGTAATTTGCCATAATA-TGTAGGGATGTTATAGAGAAGATGA-TTACCT-AAAT----T-TTGT---TACATATTGCAAC--AATATGTCA---CAT-ATG-GACCCTTAGTGT-AACA-A-A-A-T-----A----T-------------TTACAC-T-AAGGGTTGCG-----G-T-------GT---------CAACCCCTGGTGTAcagttgcggtgacaagggagactttgttagtaaacgttttattaaatg
gi|7 : atttattgccgcaaccgtaaatgacgttgaccttgacccgaaaatcgtgaaacacaaacgcatctgaagtctcactgttctgaacatctgtgtatcttacattggaggggaaataatactggtaagcgttgacagcgatttatcttagtgacattgaccttaacctgaaaatcgtgatgtacggaagaacggacggacagacggataggcgaacggtacgacggacggacatgggtagcactatactccctcaccaccacacccaatggcaatttcaaggctgttgcataaacaatatgtatcagtaTTA--AACAGATAAGTTGTATAAACTGTGTAATTTGCCATAATA------------TGTAGAAAAGGTGA-TTACCT-AAGT----T-TTGT---TATATATTGCAAC--AATATGTCT---CAT-ATC-GCACCTTAATGT-AACA-C-A-A-T-----A----T-TT-------TTTTTACAT-T-AAG------G-----G-T--------T---------TAATGCTTacagaaactgattgacaccgcaacccttagtgtaacagttgttacaattgttactgtttcactaagggttgcaacagacgtggcaaccagtacttacaagaatttaaacaatcatatattctaaacgtagacaatgtatcgtgaatgctatacagtatagatataagaacttgtaacttgtaagtcgaaataaacttctgtattt
gi|9 : tgaagatctgtttaacttgcatcggatgcaaaataatgccggtaagcgttgacagcgattttctatttttatcaacaatggcattaaccttaaccttaaatcgtgacgtacggaagaaggggcggacactcggatagacgaacagtacgacggacggacttaggtagcattatacccccaaccccacccagcccttctcaagcttgcataaacaatacgtatcagtaTTA--AACAAATAAATTGTATAAATTGTGTAATTTGCTATAAT-ATATAGAGATATCATAGAGAAGTTGAGTT--CTGAAAT----T-TTGT---TACATATTGCCACTTAGTTTAACA----AA-ATA-TGTTTTT------AACA-A-A-A-T-----A----T-GT-------TTGTTAAAC-T-AAG------G-----G-TTGCA---GTTA-------TAACCCCTAGTGTtcactggaaatagttattgatactgtt
gi|6 : ggacagtacgacggacggacggagatgggtagcactatatcccatcccattttaagacggtggtttaaacaacacgtaacaacaATACATT-TGTAATTTGCCATAATA-TGTAGGGATATTATAGAGAAGACGA-TTTTCT-AAAT----T-TTAT---TACAAATTGCAAC--AATATGTCA---CAT-ATT-GCCCCTTAGTGT-AACA-A-A-A-T-----G----T-TT-------TTGTAACAC-T-AAGGATTGCG-----A-T-------GA---------CAACCCTTAATGTAtacaaatattgattttgtagggtaacaaatattgagtttgttacactaagggatgttgttacattaaagccacaaagcatttacacacttgatatagtata
gi|5 : ctcttagtgtaacacaatcagtttttgtATAAATTGTGTAATTTGCCATACTA-TGTAGGGATATTATAGAAAAGATAA-TTTCCT-AAAT----T-GTGT---TACATATTGCAAC--AATATGTCG---CAT-ATC-GCCCCTTGGTGT-AACA-A-A-A-T-----A----T-TT-------TTGTTACAC-T-TAG------G-----G-T-------ctgtttaatactgatacgtattgttaatgcaactgccttgaaatgggggtggcatggggagggttggtgaggggctaatatagtgctacccatgtccatctgttgtaccatccgtccatccgtctgtccacccgttgttctgtacataacaatttcagttacggtcagtatcactgctactataaatagaaaatccctgtcaacgtttacaagtattattttgcatcggata
gi|3 : atttgcatcggatgcaaagtaatacccgtaagcgttgacaccgattttctatgacattgaccttgtcctaaaatcgtgacgtacagaagaacgggcggacagacggataggcaagacggtatgacggacggacatgggtagcaatatatcctcaccactgcaacccatttcaaagcggttgcacggttgcgtaaacaatatatatcagaattaaacagTAGAATATATGA-TTGTTT-AAAT----TCTTGTAAGTACTGGTTGCCAC--G-TCTGTTG---CAA-------CCCTTAGTGA-AACA-GTA-A-C-----A----A-TTGTAACAACTGTTACAC-T-AAGGGTTGCG-----G-T-------GT---------CAATCtgcggtgtaacataaactaattgtgttacactaagggttgcggtgtaacataaactaattttgttacactaagggttgcggaatcaacccttagtgtaacaattgtt
gi|13 : atttattgccgcaaccgtaaatgacgttgaccttgacccgaaaatcgtgaaacacaaacgcatctgaagtctcactgttctgaacatctgtgtatcttacattggaggggaaataatactggtaagcgttgacagcgatttatcttagtgacattgaccttaacctgaaaatcgtgatgtacggaagaacggacggacagacggataggcgaacggtacgacggacggacatgggtagcactatactccctcaccaccacacccaatggcaatttcaaggctgttgcataaacaatatgtatcagtattaaacatataaattgtataaattgtgtaatttgccataatatgtagggatgttatagagaagatgattacctaaattttgttacatattgcaacaatatgtcacatatggacccttagtgtaacaaaatatttacactaagggttgcggtgtcaacccctggtgtaacagaaactTAACA-AAATGGGTT-TTGT---TACAC-TTAGGAC---------CG---CAACGTA-ACTCTT-AGTGT-AACA-A-C-A-C---------------------TTGTTACAC-T-AAG------C-----G-T-------AT---------aacgtagacaatgtatcgtgaatgctatacagtatagatataagaacttgtaacttgtaagtcgaaataaacttctgtattt
gi|6 : ggtaactcttagtgaaacaaaaccccttaggttttttcgttacacttagggttacggttgcgatccttagtgT----T-TTGT---TACAT----TAAG--GGT-TGTCATCGCAA-------TCCTTAGTGT-TACA-A-A-AAC-----A----T-TT-------T-GTTACAC-T-AAG------G-----G-gtttggcacatgtatagacatttgataataaaacgggttctctaagtaaaaccttttttaactagaaatttatttatccctgctatgaaatg
gi|13 : ctcttagtgtaacacaatcagtATGTGCCA---AAC-ATACGC---TTAGTGT-AACA-A-G----------------TG-------TTGTTACAC-T-AAG------A-----G-TTAC----GTTG-------CGGTCCTAAGTGTAgcaatatgtgacatattgttgcaatttgtaataaaatttagaaaatcgtcttctctataatatccctacatattatggcaaattacaaatgtatctgtttaatactgatacgtattgttaatgcaactgccttgaaatgggggtggcatggggagggttggtgaggggctaatatagtgctacccatgtccatctgttgtaccatccgtccatccgtctgtccacccgttgttctgtacataacaatttcagttacggtcagtatcactgctactataaatagaaaatccctgtcaacgtttacaagtattattttgcatcggata
gi|5 : ggtaactcttagtgaaacaaaaccccttaggttttttcgttacacttagggttacggttgcgatccttagtgtaacaaaatgggttttgtTATGTTA---CACCGCA-ACCCTA-AGTGT-AACA-A-A-A-------A----TATT-------TTGTTACAC-C-AAG------G-----G-gtatagacatttgataataaaacgggttctctaagtaaaaccttttttaactagaaatttatttatccctgctatgaaatg
gi|11 : atttgcatcggatgcaaagtaatacccgtaagcgttgacaccgattttctatgacattgaccttgtcctaaaatcgtgacgtacagaagaacgggcggacagacggataggcaagacggtatgacggacggacatgggtagcaatatatcctcaccactgcaacccatttcaaagcggttgcacggttgcgtaaacaatatatatcagaattaaacagataaattgtgtaatttgccatactatgtagggatattatagaaaagataatttcctaaattgtgttacatattgcaacaatatgtcgcatatcgcGTTA---TAA-ATA-ACCCTT-AGTAA-AACA-A-ACA-T-----A----T-AC-------TTGTaactaattgtgttacactaagggttgcggtgtaacataaactaattttgttacactaagggttgcggaatcaacccttagtgtaacaattgtt
gi|13 : tnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaaattacacaaattaaagcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnagaaaatcgtgtttcggcgTA-ACTCTT-AGTGA-AACA-A-A-A-CCCCTTAGGTTT-TT-------TCGTTACAC-T-TAG------G-----G-TTACG---GTTG-------CGATCCTTAGTGTAcgcaaacattagtgtaaggaaataagt
gi|5 : ggCCCTTAGTGT-AACA-A-A-A-TTA---G----T-TT-------ATGTTACAC-C-G-----------------------------------CAACCCTTAGTGTAacaaaatgggttttgttacacttaggaccgcaacgtaactcttagtgtaacaacacttgttacactaagcgtatgtttggcacatgtatagacatttgataataaaacgggttctctaagtaaaaccttttttaactagaaatttatttatccctgctatgaaatg
gi|10 : atttgcatcggatgcaaagtaatacccgtaagcgttgacaccgattttctatgacattgaccttgtcctaaaatcgtgacgtacagaagaacgggcggacagacggataggcaagacggtatgacggacggacatgggtagcaatatatcctcaccactgcaacccatttcaaagcggttgcacggttgcgtaaacaatatatatcagaattaaacagataaattgtgtaatttgccatactatgtagggatattatagaaaagataatttcctaaattgtgttacatattgcaacaatatgtcgcatatcgccccttggtgtaacaaaatatttttgttacacttagggttgcggtgtaacataaactaattgtgtCCCTTAGTAT-AACA-A-A-AAC-----A----T-TT-------TTGATACAC-T-AAGGTTAC-G-----G-T-------GT---------CAACCCTTAGttgcggaatcaacccttagtgtaacaattgtt
gi|10 : tattgtatttatattcgtcataccattgtttatagaatgttatggttataaaaaagcggattttatgccggattatcatgatcaataatagctatgtatgctttgtggcaaCCTTAGTGT-ATCA-A-A-AAT-----G----T-TT-------TTGTTATAC-T-AAG------G-----G-T-------aaacaattgttgttacactaagcgtatgttttgttcatgtattgacatttgattataaaaagggttcatttagtgtaacatttcttttagaaatttaattatccctgctatatgtacgaaattggagcatatagtttt
gi|4 : tattgtatttatattcgtcataccattgtttatagaatgttatggttataaaaaagcggattttatgccggattatcatgatcaataatagctatgtatgctttgtggcaTTAGTGT-AACA-A-A-A-------A----TATT-------TTGTTACACTT-AAG------G-----G-C-------Gttacggtgtcaacccttagaaacaattgttgttacactaagcgtatgttttgttcatgtattgacatttgattataaaaagggttcatttagtgtaacatttcttttagaaatttaattatccctgctatatgtacgaaattggagcatatagtttt
gi|6 : agaaagagaaaaatatcgaaacgacatgaataccccctccctctatctttctattttttgcaaaggtgatcttgactcaagaatccataagcgcaaactcgtccgaagtatattgtttctgaacacgtgtatgaagtttcatcaaaattgtattaaaataaggtcggtcgagcggttactgtgcttttctgctataagtaacgatgactgactttgaccagaaagtcgtgaaacgctaacgtattcaaagtatctctgttctgaacatctgtaacttgcatgggatggaaaataatgccggtaaacgttgaaatcgattttctattttgagtaactgtgacgttgaccttgacctgaaaatcgttacgtacggaaggacggatggacgatacgcaaaagacggacatgggtagcactatatcccattcaccaccttaccccaacccccatgtcaagccggttgcataaataatacgtatcggtattaaacagatgaattgtataaattgtgtaatttgtcataatatgtagagataatatagagaagatgatttccttgattttgttacatatttcaacaatatgtcacatatTTAGTGT-AACA-C-A-ATC-----AG---T-TT-------TTGTTACAT-T-AAG------G-----GTT-------GTCATCG----CAATCCTTAGTGTcagttgcggtgacaagggagactttgttagtaaacgttttattaaatg
gi|13 : ctcAGTGT-AACA-A-A-A-C-----C----CATT-------TTGTTACAC-T-AAG------G-----A-TCGCAACCGT----------AACCCTAAGTGTAtacaaaaacattttgttacactaaggggcaatatgtgacatattgttgcaatttgtaataaaatttagaaaatcgtcttctctataatatccctacatattatggcaaattacaaatgtatctgtttaatactgatacgtattgttaatgcaactgccttgaaatgggggtggcatggggagggttggtgaggggctaatatagtgctacccatgtccatctgttgtaccatccgtccatccgtctgtccacccgttgttctgtacataacaatttcagttacggtcagtatcactgctactataaatagaaaatccctgtcaacgtttacaagtattattttgcatcggata
gi|8 : ggtaactcttagtgaaacaaaaccccttaggttttttcgtGTGATGATA-A-ATA-T-----A----T-TT-------TTGTCACAC-T-AAG------G-----G-T-------taggaccgcaacgtaactcttagtgtaacaacacttgttacactaagcgtatgtttggcacatgtatagacatttgataataaaacgggttctctaagtaaaaccttttttaactagaaatttatttatccctgctatgaaatg
gi|5 : taacggttatttataaccacaacccttagtgtaacaaaaataagtttaagaaaatcttattGTGT-AACATA-A-A-CT----A----A-TT-------TTGTTACAC-T-AAG------G-----G-TTGCGGA-AT---------CAACCCTTAGTGTAtgacgaatatgaattgtatagtcattcattaataatttgttaacaacagacctaatgtttacatacttgttggcccttatacttaatgaaagttaatatggtataaataatacaaccaacacgaaatgtaacacacacaccatataaacatattcctatatttaatctaagcaattgtacagtacaatttcttgatttcatcagagatataaaatactattatctgtctcatacatgttcctacctagtatatgaacaaaagaacagttcaacgtgttacctgttccctttttagct
gi|9 : atttgcatcggatgcaaagtaatacccgtaagcgttgacaccgattttctatgacattgaccttgtcctaaaatcgtgacgtacagaagaacgggcggacagacggataggcaagacggtatgacggacggacatgggtagcaatatatcctcaccactgcaacccatttcaaagcggttgcacggttgcgtaaacaatatatatcagaattaaacagataaattgtgtaatttgccatactatgtagggatattatagaaaagataatttcctaaattgtgttacatattgcaacaatatgtcgcatatcgccccttggtgtaacaaaatatttttgttacacttagggttgcggtgtaacataaactaattgtgttacactaagggttgcgACA-A-A-A-TCA---A----T-AT-------TTGTAACAC-T-AGG------G-----G-TT------ATAACTG----CAACCCTTAGTTTAacaattgtt
gi|2 : ggacagtacgacggacggacggagatgggtagcactatatcccatcccattttaagacggtggtttaaacaacacgtaacaacattaaacaaataaattgtataaattgtgtaatttgctataatatatagagatatcatagagaagttgagttctgaaattttgttacatattgccacttagtttaacaaaatatgtttttaacaaaatatgtttgtATA-A-ATA-T-----A----T-TT-------TTGTTACAC-T-AAG------G-----A-T-------agggtaacaaatattgagtttgttacactaagggatgttgttacattaaagccacaaagcatttacacacttgatatagtata
gi|8 : tagagtaatgctatattagtaatagcatcatcttgagttataattgtcagaaaaggaatacttatgttgcatggggaaggggggtcgagattcagggagaaaagggtcaataacaagttcatcaaaattagaataatgcataaatactttcatttgtcactcattaatagttgtatcctgtttctcagatgttcaactcttgaaagtgacatagcgcgctctagttttattttggttttaaaactgcttcattttgtcaccatcgttataaaagcattcatctaaaagtaggctgacatcgcaatatatcataaaatgtgttttatcttggacatttgtagttatggaacattactaatacaattatcttagtgaaaataaataacattaacgaagagtaagtagactcatatcatctcaaactcttgtttaaaaaacgtaaataaacaaacttatataaaattacgaatctcctttaaatcttcggttttccacttcattattttaagttatttaccagtgttaagaaaaccgtccaacaaagtttttctaagggttgtttnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaagaacatcgtacttctttg-A-A-A-CTT---A----T-TT-------TTGTTACAC-T-AAG------G-----G-T-------tatttnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaagacaatcttatttctttgataaatatagttttgttacactaagggtta
gi|12 : taacggttatttataaccaca-A-T-----A----T-TT-------TCGTTACAC-T-AAG------G-----GTT-------GTTTACAACTGCAACCCTTaagaaaatcttattgtgatgataaatatatttttgtcacactaagggttgacgaatatgaattgtatagtcattcattaataatttgttaacaacagacctaatgtttacatacttgttggcccttatacttaatgaaagttaatatggtataaataatacaaccaacacgaaatgtaacacacacaccatataaacatattcctatatttaatctaagcaattgtacagtacaatttcttgatttcatcagagatataaaatactattatctgtctcatacatgttcctacctagtatatgaacaaaagaacagttcaacgtgttacctgttccctttttagct
gi|3 : nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnagaaaatcgtattccaaagataagt----T-TT-------CTGTTACAC-C-AGG------G-----G-TTGACACCG----------CAACCCTTAGTGTA
gi|15 : atttattgccgcaaccgtaaatgacgttgaccttgacccgaaaatcgtgaaacacaaacgcatctgaagtctcactgttctgaacatctgtgtatcttacattggaggggaaataatactggtaagcgttgacagcgatttatcttagtgacattgaccttaacctgaaaatcgtgatgtacggaagaacggacggacagacggataggcgaacggtacgacggacggacatgggtagcactatactccctcaccaccacacccaatggcaatttcaaggctgttgcataaacaatatgtatcagtattaaacatataaattgtataaattgtgtaatttgccataatatgtagggatgttatagagaagatgattacctaaattttgttacatattgcaacaatatgtcacatatggacccttagtgtaacaaaatattT-------TTGTTACAC-TGAAG------GTTGCGG-T-------GT---------CAATCCTTAATGTActgattgacaccgcaacccttagtgtaacagttgttacaattgttactgtttcactaagggttgcaacagacgtggcaaccagtacttacaagaatttaaacaatcatatattctaaacgtagacaatgtatcgtgaatgctatacagtatagatataagaacttgtaacttgtaagtcgaaataaacttctgtattt
gi|5 : -------TTGTTACAC-T-AAG------G-----G-TTG-----ATTCCG-----CAACCCTTAGTGTAattgttacactaagcatatgtttgatacatgtattgacatttgattatacaacagattcagttagggttataatgtttgttcaactagaaatttatcctgctatggaatggggacatatggtgt
gi|16 : atttgcatcggatgcaaagtaatacccgtaagcgttgacaccgattttctatgacattgaccttgtcctaaaatcgtgacgtacagaagaacgggcggacagacggataggcaagacggtatgacggacggacatgggtagcaatatatcctcaccactgcaacccatttcaaagcggttgcacggttgcgtaaacaatatatatcagaattaaacagataaattgtgtaatttgccatactatgtagggatattatagaaaagataatttcctaaattgtgttacatattgcaacaatatgtcgcatatcgccccttggtgtaacaaaatatttttgttacacttagggttgcggtgtaacataaactaattgtgttacactaagggttgcggtgtaacataaactaattttgt------G-----A-T-------GT---------CAACCCTTAGTGTAttgtt
3 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|17 ): AAAATGCTATGGTTAAAAAAAGCGGATTTTATAAAAATGATTTTTTGTCGGATTATCATGCGCGATAATAGCTATGTATGATTTGAGG
Unaligned ( gi|19 ): ACTAAAACGATCAATAGTAAAATTCATCAGATTGTTAAACAAGTATTAATGAAACA
Unaligned ( gi|20 ): CGGCAGACAGACGGACGGACGAACGGACGGACGGACAGTGATAACATTGTTCAT
Alignments
lowQualScore : 11111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 1111111111111111
lowQualScore : 11111111 33333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333 2 333 4444 2 33 55555 2 3333333333333333 1 2 1 1 555555 6666666 11 2 222222 333 333 111 4 111 1 11 1 22 111111 44444444444 6666666666666666666666666666666666666666666666666666666666666666666666666666 444444444444444444444444444444444444444 111111 111111111 1111111111 11111 111111111 1111 222222222222222222222222 555555555555555555555555555555
lowQualScore : 5 4 1 99 00000000 3 44444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444 777 3 11 777 4444 3 1 11 00 1 1 0 11 00000 4 2 0 2222222222222222 4 4 5 0 5 5 4 4 777777 4 3 5555555 99 4 0 2 888888 3 2 555 4 4 3 888 2 6 1 2 1 77 1 6 2 1 3 555 0 666 1 6 3 22 66 3 99 55 0 0 1 77 8 666 666666 66 9999 5 5 44444444444 6 5 4444444444444444444444444444444444444444444444444444444444444444444444444444 4 66 9999 999999999999999999999999999999999999999 666 000000 1 5 5 666666666 0000000000 00000 666666666 5 4 5 2 1 3 1 3 7777 77 3 2 6666 44 3 6666 0 44 5555 2 555555555555555555555555 555555555555555555555555555555
lowQualScore : . . . .. ........ . ............................................................................................................................................... ... . .. ... .... . . .. .. . . . .. ..... . . . ................ . . . . . . . . ...... . . ....... .. . . . ...... . . ... . . . ... . . . . . .. . . . . . ... . ... . . . .. .. . .. .. . . . .. . ... ...... .. .... . . ........... . . ............................................................................ . .. .... ....................................... ... ...... . . . ......... .......... ..... ......... . . . . . . . . .... .. . . .... .. . .... . .. .... . ........................ ..............................
lowQualScore : 4 6 0 55 33333333 1 88888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888 000 7 33 333 0000 7 0 77 77 0 0 7 77 00000 0 5 0 5555555555555555 0 0 5 0 0 0 0 0 555555 0 0 0000000 55 0 0 5 555555 0 5 000 0 0 0 000 5 0 0 5 0 00 0 0 5 0 0 555 0 555 5 0 0 00 55 2 22 44 8 6 0 22 0 888 444444 99 8888 0 0 88888888888 2 0 4444444444444444444444444444444444444444444444444444444444444444444444444444 4 11 4444 111111111111111111111111111111111111111 333 000000 0 0 0 000000000 8888888888 00000 000000000 7 0 7 4 3 6 0 1 7777 11 5 2 5555 22 1 1111 4 33 9999 4 555555555555555555555555 555555555555555555555555555555
consensus : GAAAATCGTATTCCAGNGATAAGTATATTTTTGTTACACTAAGGGTT--ATTT----ATAACCGCAACCCTTAGTGTAAC-AA-A-A-T-------A----A--G---T--------------------------AACA-------CANTAAG--TTT-TGNTGCGNC--------------G-A----TAA-GT---A--------T-------AT---------T---TTTGTTACACTAAGGGTTGACGA-ATACGA---ATTGT----ATA-GTCATTCA--TTAGTAATTTATTNACAAAATTACAGACCNAACGTTTACATACTTGTTGGNCCTTATGCATTAAAAATGTAAAAATGTATTGAAAGTTAATNTGGCATAAATNATACAAGCCAACACGAAATGTAACACGCACACCNTATAANCATATTCCTAGTCCTATATTTNATCTAAGCAATTGTACAGTACAANTTCTTGATTTCACCAGAGATATAAAATACTATTATCTGTCTCTCATTTCATACATGTTCCTACCTAGTATATGANCGAAAGNACAGTTCAAANGTGTTACCTGTTCCCTTTNTAGCTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGAGAGAGAAAAATATCGAAACGACATGAATGCCCCCCNCCCCACACATCTTNCNATTNTTCGCAAACTCTGTCCGAGGTATNTTGNTTCTGAACACNTGCATGAAGTTTCATCAAAATTGNATTAAAANAAGGNCGGTCGAGCGGTNGCNGTGNTTTTCTGCTTTTAGTAACGATGACGTTGACCTTGACCCGAAAAATCGTGAAACGCAAACGCATCCGAAGTATCTCTG-TTCTGAACATCTGTGT-A------ACTTGCATCGGA--TG---NAAAATAATGCCGGT-AAGCGTTGACAGCGATTTTCTATT-T-T-A-GT--A-CAGTGACATTGACCTTGACCTGAAAATCGTGACGTACGG-A-------------A-GA-------------CGGAC------------GGA------------C-------------GGACGGTAC-G--ACGGACGGAC----ATGGGTAGCACTATATC---TC-------------CC-----------------TCA--A---C--CACA-T-AA----A----TT----GTA---TAAA-----TTG---------CGTAATTTGCCATAAT-ATGTAGGGATATTATAGAGAAGATGA-TTNCCTAAATT-TTGT---TA-CATATTGCNA----C--A-ATA----TGTCACAN-ATN-GCCCCTTAGTGTAACAA-AA-----T--A----T-TT-------TTGTTACACTAAG------G------G-T-------GT-----CAACCCTTAGTGTA
Reference ( family-3843 ) : GAAAATCTTATTCCGGNGATAAGTATATTTTTGTTACACTAAGGGTT--ATTT----ATAACCGCAACCCTTAGTGTAAC-AA-A-A-T-------A----A--G---T--------------------------AACA-------CANTAAG--TTT-TGNTANGAC--------------G-A----TAA-GT---A--------T-------AT---------T---TTTGTTACACTAAGGGTTGACGATATGCGACATATTGTTGCAATATGTNACNCAATTTAGNAANTTGTCNACA-----ACAGACCTAATGTTTACATACTTGTTGGCCCTTATAC-TTAA----------------TGAAAGTTAATATGGTATAAATAATACAA-CCAACACGAAATGTAACACACACACCATATAAACATAT------TCCTATATTTAATCTAAGCAATTGTACAGTACAATTTCTTGATTTCATCAGAGATATAAAATACTATTATCTGTC-------TCATACATGTTCCTACCTAGTATATGAACAAAAGAACAGTTC-AACGTGTTACCTGTTCCCTTTTTAGCTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGAAAGAGAAAAATATCGAAACGACATGAATACCCCCTCCCTC---TATCTTTCTATTTTTCGCAAAC-C-GTCCGAAGTATCTCGNTTCTGAACACGTGTATGNANCTTCATCAANATCGGATNAAAATAATGCCGGT-AAGCGTTGACAGCGATTTTCTATTTTTAGTAACAATGACATTGACCTTGACCTGAAAAATCGTGAAACGCNAACGCATCCGAAGTATC-CTG-TTCTGAACATCTGTGT-A------ACTTGCATCGGA--TG---NAAAATAATGCCGGT-AAGCGTTGACAGCGATTTTCTATT-T-T-A-GT--A-CAGTGACATTGACCTTGACCTGAAAATCGTGACGTACGG-A-------------A-AA-------------CGGAC------------GGA------------C-------------GGACGGTAC-G--ACGGACGGAC----ATGGGTAGCACTATATC---TC-------------CC-----------------TCA--A---C--CANA-T-AA----A----TT----GTA---TAAA-----TTG---------TGTAATTTGCCATAAT-ATGTAGGGATATTATAGAGAAGATGA-TTNCCTAAATT-TTGT---TA-CATATTGCAA----C--A-ATA----TGTCACAN-ATA-GCCCCTTAGTGTAACAA-AA-----T--A----T-TT-------TTGTTACACTAAG------G------G-T-------GT-----CAACCCTTAGTGTA
gi|1 : GAGAATCTTATTCCAGGGATAGGTATATCTTTGTTACACTAAGGGTT--ATTT----ATAACTGCAACCCTTAGTGTAAC-AA-A-A-T-------A----A--G---T--------------------------AACA-------CAATAAG--TTT-TGATAAGAC--------------G-A----TAA-GT---A--------T-------AT---------T---TTTGTTACACTAAGGGTAGACGA-ATATGA---ATTGT----ATA-GTCATTCA--TTAGTAATTTATTTACAAAATTACAGACCAAACGTTTACATACTTGTTGGACCTTATGTATTAAAAATGTAAAAATGTATTAAAAATTAATTTGACATAAATTAT-CAAGCCAACACAAAAT-TAA-ATGTACACTTTATAATCATATTCCTAGTCCTATATTTTATCTAAGCAATTGTACAGTACAAGTTCTTGATTTCACCAGAGATATAAAATACTATTATCTGTCTCTCATTTCATACATGTTCCTACCTAGTATATG-TCGAAAATACAGTTCAAAAGTGTTACTT------TTTGTAGCT
gi|1 : AAAGAGAGAAAAATATCAAAACGACATGAATGTCCCCCACCCCACACATCTTACAATTGTTCGCAAAC-TTGTCCGAGGTATCTTGGTTCTGAACACCTACATGAAGTTTCATCAAAATTGGATTAAAAGAAGGGCAGTCAAGCGGTAGCGGTGATTTTCTGCTTTTAGTAATGATGACATTGACCTTGACCCGAAAAATCGTGAAATGCAAACGCATCCGAATTATCTCTG-TTCTGAACATCTGTGT-ATTTGTTACTTGCATCTGA--TG---GGAAATAATGCCGGT-AATTGTTGACAGCAATTTTCTATT-T-T-ATGT--AACAGTGACATTGACCTTGACCTGAAAATCGTGATTTACGA-A-------------A-AA-------------CAGAA------------GGA------------C-------------AGACGGCAC-G--ACAGACGGAC----ATGGGTAGCACTATATC---TC-------------CC-----------------TCA--A---C--CATA-T-AA----A----TT----GTA---TAAA-----TTG---------TGAAATTTGCCATAATAATGCAGGGATATTATAGAGAAGATGA-TTAACTAAATT-TTGT---TG-CATATTGCAA----C--A-ATA----TGTCACAA-ATA-GCCCTTTAGTGAAACAA-AA-----C--A----T-TT-------TTGTTACACTAAG------G------G-T-------GT-----CAACCCTTAGTGTAacaatttagtaatacctcatgattcatgactaatccctttccaaaataaccaaaacattcactgaaataatgttttgtttgtaagacttcttacttttctttttataattatcatttttccaatcttccacagcatatttacagtcacatttgttagttaaaatatacacgaaaaaaagagagaaaaatatcaaaacgacatgaatgtcccccaccccacacatcttacaattgttcgcaaacttgtccgaggtatcttggttctgaacacctacatgaagtttcatcaaaattggattaaaagaagggcagtcaagcggtagcggtgattttctgcttttagtaatgatgacattgaccttgacccgaaaaatcgtgaaatgcaaacgcatccgaattatctctgttctgaacatctgtgtatttgttacttgcatctgatgggaaataatgccggtaattgttgacagcaattttctattttatgtaacagtgacattgaccttgacctgaaaatcgtgatttacgaaaaacagaaggacagacggcacgacagacggacatgggtagcactatatctccctcaaccatataaattgtataaattgtgaaatttgccataataatgcagggatattatagagaagatgattaactaaattttgttgcatattgcaacaatatgtcacaaatagccctttagtgaaacaaaacatttttgttacactaagggtgtcaacccttagtgtaccca
gi|10 : gagaatcttattccagggataggtatatctttgttacactaagggttatttataactgcaacccttagtgtaacaaaataagtaacacaataagttttgataagacgataagtatatttttgttacactaagggtagacgaatatgaattgtatagtcattcattagtaatttatttacaaaattacagaccaaacgtttacatacttgttggaccttatgtattaaaaatgtaaaaatgtattaaaaattaatttgacataaattatcaagccaacacaaaattaaatgtacactttataatcatattcctagtcctatattttatctaagcaattgtacagtacaagttcttgatttcaccagagatataaaatactattatctgtctctcatttcatacatgttcctacctagtatatgtcgaaaatacagttcaaaagtgttactttttgtagctacaatttagtaatacctcatgattcatgactaatccctttccaaaataaccaaaacattcactgaaataatgttttgtttgtaagacttcttacttttctttttataattatcatttttccaatcttccacagcatatttacagtcacatttgttagttaaaatatacacgaaaaACGCTTAGTGTAAC-AACA-A-TTGTTTCTA----A--GGGTT--------------------------GACA-------CCGTAA---CCT-TAGTGTATC--------------A-A-----AA------A--------T-------GT---------T---TTTGTTATACTAAGGGTTGccca
gi|10 : tattgtatttatattcgtcataccattgtttatagaatgttatggttataaaaaagcggattttatgccggattatcatgatcaataatagctatgtatgctttgtggCCCTTAGTATAACAA-AAA----C--A----T-TT-------TTGATACACTAAGGTTAC-G------G-T-------GT-----CAACCCTTAGatgttttgttcatgtattgacatttgattataaaaagggttcatttagtgtaacatttcttttagaaatttaattatccctgctatatgtacgaaattggagcatatagtttt
gi|11 : tattgtatttatattcgtcataccattgtttatagaatgttatggttataaaaaagcggattttatgccggattatcatgatcaataatagctatgtatgctttgtggcaaGAAAATCGTGTTTCGGCGACAAGTATATGTTTGTTTTACTAAGGGTT--ATTT----ATAACCGCAAACATTAGTGTAAG-GA-A-A-T-------A----A--G---T--------------------------aaacaattgttgttacactaagcgtatgttttgttcatgtattgacatttgattataaaaagggttcatttagtgtaacatttcttttagaaatttaattatccctgctatatgtacgaaattggagcatatagtttt
gi|12 : tnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaaattacacaaattaaagcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaGAAAATCGTATTCCAAAGATAAGTATATTTTCGTTACACTAAGGGTT--GTTT----ACAACTGCAACCCTT
gi|13 : nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaCTCTTAGTGAAACAA-AACCCCTT--AGGTTT-TT-------TCGTTACACTTAG------G------G-TTACG---GTTG---CGATCCTTAGTGTA
gi|13 : ggtaaTTTTGTTACACTAAGGATC--GC--------AACCGTAACCCTAAGTGTAAC-GA-A-A-A-------A----A--acaaaatgggttttgttacacttaggaccgcaacgtaactcttagtgtaacaacacttgttacactaagcgtatgtttggcacatgtatagacatttgataataaaacgggttctctaagtaaaaccttttttaactagaaatttatttatccctgctatgaaatg
gi|13 : ggtaactcttagtgaaacaaaaccccttaggCCTAAGTGTAACAA-AA-----C--C----CATT-------TTGTTACACTAAG------G------A-TCGCAACCGT------AACCCTAAGTGTAtgggttttgttacacttaggaccgcaacgtaactcttagtgtaacaacacttgttacactaagcgtatgtttggcacatgtatagacatttgataataaaacgggttctctaagtaaaaccttttttaactagaaatttatttatccctgctatgaaatg
gi|13 : ggtaactcttagtgaaacaaaaccccttaggttttttcgtACGCTTAGTGTAAC-AA-GTG-T-------------------T--------------------------GTTA-------CACTAAGAGTTA-CGTTGCGGT--------------C-C----TAA-GT---G--------T-------AACAAAACCCAT---TTTGTTACACTAAGGATCGaccgcaacgtaactcttagtgtaacaacacttgttacactaagcgtatgtttggcacatgtatagacatttgataataaaacgggttctctaagtaaaaccttttttaactagaaatttatttatccctgctatgaaatg
gi|13 : ggtaactcttagtgaaacaaaaccccttaggttttttcgttacacttagggttacggttgCCTTAGTGTAACAA-AA-----TG-G----G-TT-------TTGTTACACTTAG------GACCGCAA-C-------GT------AACTCTTAGTGTAatgtttggcacatgtatagacatttgataataaaacgggttctctaagtaaaaccttttttaactagaaatttatttatccctgctatgaaatg
gi|13 : ggtaactcttagtgaaacaaaaccccttaggttttttcgttacacttagggttacggttgcgatTT-TTAT---TATCAAATGTCTA----T--ACATG----TGCCAAAC-ATA---CGCTTAGTGTAACAA-G----------------TG-------TTGTTACACTAAG------A------G-TTAC----GTTG---CGGTCCTAAGTGTAacaacacttgttacactaagcgtatgtttggcacatgtatagacatttgataataaaacgggttctctaagtaaaaccttttttaactagaaatttatttatccctgctatgaaatg
gi|14 : ggtaactcttagtgaaacaaaaccccttaggttttttcgttacacttagggttacggttgcgatccttagtgtaacaaaatgggttttgtCATTGACCTTGACTTGAAAA-TCGTGAAACGCCTCCGCATCTGTAGTATC-------------ATCTGTGT-A------ACTTGCATCGGA--CG---GAAAATAATGCCGGT-AAGCATTGACAGCGATTTTCTATT-T-TAA-GT--ATCAGTGATATTGACCTTGACCTGCAAATCGTAACGTACGGAA-------------A-AA-------------TGGACAGACAAACGTATGGG------------C-------------GAACGGTAC-G--ACAGACGGAC----AGGTGTAGCACTATATT---TC-------------CC-----------------cgggttctctaagtaaaaccttttttaactagaaatttatttatccctgctatgaaatg
gi|15 : TTACATTAAGG-----ATTG----ACA-CCGCAACCTTCAGTGTAAC-AA-A-cat
gi|15 : CTGAATC-T-GT---TG-TATAAT-CAAATGTC--A-ATACATGTATCAAAC-ATATGC---TTAGTGTAACAA------------------------------TTACATTAAG------G------A-TTGACACCG------CAACCTTCAGTGTAttgttacactaagcatatgtttgatacatgtattgacatttgattatacaacagattcagttagggttataatgtttgttcaactagaaatttatcctgctatggaatggggacatatggtgt
gi|16 : tttgt------G------A-T-------GT-----CAACCCTTAGTGTAttagggttataatgtttgttcaactagaaatttatcctgctatggaatggggacatatggtgt
gi|16 : atgcTGTTACACTAAGGGTTGACacatttgttacatgtattggcatttgattataaaacaggttcatttagtgtaacaattttttttttttaaacttagaaatttatttatccct
gi|16 : atgcgatTGTAACAA-A--------------------------TGTTACACTAAG------G------G-T-------tttgttacatgtattggcatttgattataaaacaggttcatttagtgtaacaattttttttttttaaacttagaaatttatttatccct
gi|18 : atgcgatgtcaGAAATTCTTATTCCAGGGAAAGGAATATTTT-GTTACACCAAGGGTT--ATTT----AT-ACCGCAAtgtattggcatttgattataaaacaggttcatttagtgtaacaattttttttttttaaacttagaaatttatttatccct
gi|2 : aGAACATCGTACTTCTTTGATAAATATATTTTTGTTACACTAAGGATT--ATTTNNNNNNNNNNNNNNNNNNNNNNNNNNN-NN-N-N-N-------N----N--N---N--------------------------NNNN-------NNNNNNN--NNN-NNNNAAGACAATCTTATTTCTTTG-A----TAA-AT---A--------T-------AG---------T---TTTGTTACACTAAGGGTT
gi|20 : tagagtaatgctatattagtaatagcatcatcttgagttataattgtcagaaaaggaatacttatgttgcatggggaaggggggtcgagattcagggagaaaagggtcaataacaagttcatcaaaattagaataatgcataaatactttcatttgtcactcattaatagttgtatcctgtttctcagatgttcaactcttgaaagtgacatagcgcgctctagttttattttggttttaaaactgcttcattttgtcaccatcgttataaaagcattcatctaaaagtaggctgacatcgcaatatatcataaaatgtgttttatcttggacatttgtagttatggaacattactaatacaattatcttagtgaaaataaataacattaacgaagagtaagtagactcatatcatctcaaactcttgtttaaaaaacgtaaataaacaaacttatataaaattacgaatctcctttaaatcttcggttttccacttcattattttaagttatttaccagtgttaagaaaaccgtccaacaaagtttttctaagggttgtttnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaaCGG-C-------------A-GA-------------CAGAC------------GGA------------C-------------GGACGA-ACGG--ACGGACGGAC----AGTGATAACATTGTa
gi|3 : AATGACGTTGACCTTGACCCG-AAAATCGTGAAACACAAACGCATCTGAAGTCTCACTG-TTCTGAACATCTGTGT-A------TCTTACATTGGA--GG---GGAAATAATACTGGT-AAGCGTTGACAGCGATT---TATC-T-T----------AGTGACATTGACCTTAACCTGAAAATCGTGATGTACGG-A-------------AGAA-------------CGGAC------------GGACAGACGGATAGGC-------------GAACGGTAC-G--ACGGACGGAC----ATGGGTAGCACTATA-C---TC-------------CC-----------------TCACCA---C--CACACC-CA----A----TG----GCAATTTCAAGGCTGTTG---------CATAA------ACAAT-ATGTATCAGTATTAAACATATAA--A-TTGTATAAATT-GTG----TA--AT-TTGCCA----T--A-ATA----TGTtcat
gi|3 : atttattgccgcaaccgta-----------------TTA--A---A--CATA-T-AA----A----TT----GTA---TAAA-----TTG---------TGTAATTTGCCATAAT-ATGTAGGGATGTTATAGAGAAGATGA-TTACCTAAATT-TTGT---TA-CATATTGCAA----C--A-ATA----TGTCACAT-ATG-GACCCTTAGTGTAACAA-AA-----T--A----T-------------TTACACTAAGGGTTGCG------G-T-------GT-----CAACCCCTGGTGTAagggatgttatagagaagatgattacctaaattttgttacatattgcaacaatatgtcacatatggacccttagtgtaacaaaatatttacactaagggttgcggtgtcaacccctggtgtaacagaaactgattgacaccgcaacccttagtgtaacagttgttacaattgttactgtttcactaagggttgcaacagacgtggcaaccagtacttacaagaatttaaacaatcatatattctaaacgtagacaatgtatcgtgaatgctatacagtatagatataagaacttgtaacttgtaagtcgaaataaacttctgtattt
gi|3 : atttattgccgcaaccgtaaatgacgttgaccttgacccgaaaatcgtgaaacacaaacgcatctgaagtctcactgttctgaacatctgtgtatcttacattggaggggaaataatactggtaagcgttgacagcgatttatcttagtgacattgaccttaacctgaaaatcgtgatgtacggaagaacggacggacagacggataggcgaacggtacgacggacggacatgggtagcactatactccctcaccaccacacccaatggcaatttcaaggctgttgcataaacaatatgtatcagtaGCAACCCTTAGTGAAAC-AGTA-A-C-------A----ATTG---T--------------------------AACAACTGTTACACTAAG--GGT-TGCGGTGTC--------------A-A----TCA-GT-------------------------------T---TCTGTTACACCAGGGGTTGACacagaaactgattgacaccgcaacccttagtgtaacagttgttacaattgttactgtttcactaagggttgcaacagacgtggcaaccagtacttacaagaatttaaacaatcatatattctaaacgtagacaatgtatcgtgaatgctatacagtatagatataagaacttgtaacttgtaagtcgaaataaacttctgtattt
gi|3 : atttattgccgcaaccgtaaatgacgttgaccttgacccgaaaatcgtgaaacacaaacgcatctgaagtctcactgttctgaacatctgtgtatcttacattggaggggaaataatactggtaagcgttgacagcgatttatcttagtgacattgaccttaacctgaaaatcgtgatgtacggaagaacggacggacagacggataggcgaacggtacgacggacggacatgggtagcactatactccctcaccaccacacccaatggcaatttcaaggctgttgcataaacaatatgtatcagtattaaacatataaattgtataaattgtgtaatttgccataatatgtagggatgttatagagaagatgattacctaaattttgttacatattgcaacaatatgtcacatatggacccttagtgtaacaaaatatttacactaagggttgcggtTAGAATATATGA-TTGTTTAAATTCTTGTAAGTA-CTGGTTGCCA----C--G--TC----TGTTGCAA-------CCCTTAGTGAAACAGTAA-----C--A----A-TTGTAACAACTGTTACACTAAGGGTTGCG------G-T-------GT-----CAATCaacagacgtggcaaccagtacttacaagaatttaaacaatcatatattctaaacgtagacaatgtatcgtgaatgctatacagtatagatataagaacttgtaacttgtaagtcgaaataaacttctgtattt
gi|4 : atttattgccgcaaccgtaaatgacgttgaccttgacccgaaaatcgtgaaacacaaacgcatctgaagtctcactgttctgaacatctgtgtatcttacattggaggggaaataatactggtaagcgttgacagcgatttatcttagtgacattgaccttaacctgaaaatcgtgatgtacggaagaacggacggacagacggataggcgaacggtacgacggacggacatgggtagcactatactccctcaccaccacacccaatggcaatttcaaggctgttgcataaacaatatgtatcagtattaaacatataaattgtataaattgtgtaatttgccataatatgtagggatgttatagagaagatgattacctaaattttgttacatattgcaacaatatgtcacatatggacccttagtgtaacaaaatatttacactaagggttgcggtgtcaacccctggtgtaacagaaactAGAAAGAGAAAAATATCGAAACGACATGAATACCCCCTCCCTC---TATCTTTCTATTTTTTGCAAAaacgtagacaatgtatcgtgaatgctatacagtatagatataagaacttgtaacttgtaagtcgaaataaacttctgtattt
gi|4 : TTTCTATTTTTTGCAA--AGG----TGATCTTGAC-TCAAGAATCCATAAGCGCAAACTCGTCCGAAGTATA-TTGTTTCTGAACACGTGTATGA------AGTTTCATCAAAATTGTATTAAAATAAGGTCGGTCGAGCGGTTACTGTGCTTTTCTGCTAT-A-A-GTA-A-CGATGAC--TGACTTTGACCAGAAAGTCGTGAggtgatcttgactcaagaatccataagcgcaaactcgtccgaagtatattgtttctgaacacgtgtatgaagtttcatcaaaattgtattaaaataaggtcggtcgagcggttactgtgcttttctgctataagtaacgatgactgactttgaccagaaagtcgtgaaacgctaacgtattcaaagtatctctgttctgaacatctgtaacttgcatgggatggaaaataatgccggtaaacgttgaaatcgattttctattttgagtaactgtgacgttgaccttgacctgaaaatcgttacgtacggaaggacggatggacgatacgcaaaagacggacatgggtagcactatatcccattcaccaccttaccccaacccccatgtcaagccggttgcataaataatacgtatcggtattaaacagatgaattgtataaattgtgtaatttgtcataatatgtagagataatatagagaagatgatttccttgattttgttacatatttcaacaatatgtcacatatcgcccttaagtgtaacaaaatatttttgttacactaacagttgcggtgacaagggagactttgttagtaaacgttttattaaatg
gi|4 : agaaagagaaaaatatcgaaacgacatgaataccccctccctctatcCGCAAACTC-GTCCGAAGTATATTGTTTCTGAACACGTGTATGAAGTTTCATCAAAATTGTATTAAAATAAGGTCGGTCGAGCGGTTACTGTGCTTTTCTGCTATAAGTAACGATGAC--TGACTTTGACCAGAAAG-TCGTGAAACGCTAACGTATTCAAAGTATCTCTG-TTCTGAACATCTGT---A------ACTTGCATGGGA--TG---GAAAATAATGCCGGT-AAACGTTGAAATCGATTTTCTATT-T-TGA-GTA-A-CTGTGACGTTGACCTTGACCTGAAAATCGTTACGTACGG-A-------------A-----------------GGAC------------GGA------------T-------------GGACGATAC-GCAAAAGACGGAC----ATGGGTAGCACTATATC---CCATTCACCACCTTACC-----------------CCA--ACCCC--CATG-TCAA----G----CC----G--------G-----TTG---------CATAA------ATAAT-ACGTATCGGTATTAAACAGATGA--A-TTGTATAAATT-GTG----TA--AT-TTGTCA----T--A-ATA----TGT-AGAG-ATA-aacgctaacgtattcaaagtatctctgttctgaacatctgtaacttgcatgggatggaaaataatgccggtaaacgttgaaatcgattttctattttgagtaactgtgacgttgaccttgacctgaaaatcgttacgtacggaaggacggatggacgatacgcaaaagacggacatgggtagcactatatcccattcaccaccttaccccaacccccatgtcaagccggttgcataaataatacgtatcggtattaaacagatgaattgtataaattgtgtaatttgtcataatatgtagagataatatagagaagatgatttccttgattttgttacatatttcaacaatatgtcacatatcgcccttaagtgtaacaaaatatttttgttacactaacagttgcggtgacaagggagactttgttagtaaacgttttattaaatg
gi|4 : agaaagagaaaaatatcgaaacgacatgaataccccctccctctatctttctattttttgcaaaggtgatcttgactcaagaatccataag-----------------TTA--A---A--CAGA-T-GA----A----TT----GTA---TAAA-----TTG---------TGTAATTTGTCATAAT-ATGTAGAGATAATATAGAGAAGATGA-TTTCCTTGATT-TTGT---TA-CATATTTCAA----C--A-ATA----TGTCACAT-ATC-GCCCTTAAGTGTAACAA-AA-----T--A----T-TT-------TTGTTACACTAAatatagagaagatgatttccttgattttgttacatatttcaacaatatgtcacatatcgcccttaagtgtaacaaaatatttttgttacactaacagttgcggtgacaagggagactttgttagtaaacgttttattaaatg
gi|4 : agaaagagaaaaatatcgaaacgacatgaataccccctccctctatctttctattttttgcaaaggtgatcttgactcaagaatccataagcgcaaactcgtccgaagtatattgtttctgaacacgtgtatgaagtttcatcaaaattgtattaaaataaggtcggtcgagcggttactgtgcttttctgctataagtaacgatgactgactttgaccagaaagtcgtgaaacgctaacgtattcaaagtatctctgttctgaacatctgtaacttgcatgggatggaaaataatgccggtaaacgttgaaatcgattttctattttgagtaactgtgacgttgaccttgacctgaaaatcgttacgtacggaaggacggatggacgatacgcaaaagacggacatgggtagcactatatcccattcaccaccttaccccaacccccatgtcaagccggttgcataaataatacgtatcggtaTT----GTCACCGCAACTGTTAGTGTAACAAA-A-A-T-------ATTT-T--G---T--------------------------TACA-------C-TTAAG------------GGC--------------G-A----TAT-GTGACA--------T-------AT---------T---GTTGcagttgcggtgacaagggagactttgttagtaaacgttttattaaatg
gi|5 : agaaagagaaaaatatcgaaacgacatgaataccccctccctctatctttctattttttgcaaaggtgatcttgactcaagaatccataagcgcaaactcgtccgaagtatattgtttctgaacacgtgtatgaagtttcatcaaaattgtattaaaataaggtcggtcgagcggttactgtgcttttctgctataagtaacgatgactgactttgaccagaaagtcgtgaaacgctaacgtattcaaagtatctctgttctgaacatctgtaacttgcatgggatggaaaataatgccggtaaacgttgaaatcgattttctattttgagtaactgtgacgttgaccttgacctgaaaatcgttacgtacggaaggacggatggacgatacgcaaaagacggacatgggtagcactatatcccattcaccaccttaccccaacccccatgtcaagccggttgcataaataatacgtatcggtattaaacagatgaattgtataaattgtgtaatttgtcataatatgtagagataatatagagaagatgatttccttgattttgttacatattt------ATTTGCATCGGA--TG---CAAAGTAATACCCGT-AAGCGTTGACACCGATTTTCTA------------------TGACATTGACCTTGTCCT-AAAATCGTGACGTACAG-A-------------AGAA-------------CGGGC------------GGA------------CAGACGGATAGGCAAGACGGTAT-G--ACGGACGGAC----ATGGGTAGCAATATAT-------------------CC-----------------TC---A---C--CAgggagactttgttagtaaacgttttattaaatg
gi|5 : A---TAAA-----TTG---------TGTAATTTGCCATACT-ATGTAGGGATATTATAGAAAAGATAA-TTTCCTAAATT-GTGT---TA-CATATTGCAA----C--A-ATA----TGTCGCAT-ATC-GCCCCTTGGTGTAACAA-AA-----T--A----T-TT-------TTGTTACACTTAG------G------G-T-------ctgcaacccatttcaaagcggttgcacggttgcgtaaacaatatatatcagaattaaacagataaattgtgtaatttgccatactatgtagggatattatagaaaagataatttcctaaattgtgttacatattgcaacaatatgtcgcatatcgccccttggtgtaacaaaatatttttgttacacttagggttgcggtgtaacataaactaattgtgttacactaagggttgcggtgtaacataaactaattttgttacactaagggttgcggaatcaacccttagtgtaacaattgtt
gi|5 : atttgcatcggatgcaaagtaatacccgtaagcgttgacaccgattttctatgacattgaccttgtcctaaaatcgtgacgtacagaagaacgggcggacagacggataggcaagacggtatgacggacggacatgggtagcaatatatcctcaccactgcaacccatttcaaagcggttgcacggttgcgtaaacaatatatatcagaattaaacagTTGTTACACTAAGGGTTG-ATT---------CCGCAACCCTTAGTGTAAC-AA-A-A-T-------T----A--G---TTTATGTTACACCGCAACCCTTAGTGTAACA-------CAATTAG--TTTATGTTACACC--------------GCAACCCTAA-GT---G--------TAACAAAAATA--------T---TTTGTTACACCAAGG---GGCGATATGCGACATATTGTTGCAATATGTAACACAATTTAGGAAATTATCtgcggtgtaacataaactaattgtgttacactaagggttgcggtgtaacataaactaattttgttacactaagggttgcggaatcaacccttagtgtaacaattgtt
gi|6 : atttgcatcggatgcaaagtaatacccgtaagcgttgacaccgattttctatgacattgaccttgtcctaaaatcgtgacgtacagaagaacgggcggacagacggataggcaagacggtatgacggacggacatgggtagcaatatatcctcaccactgcaacccatttcaaagcggttgcacggttgcgtaaacaatatatatcagaattaaacagataaattgtgtaatttgccatactatgtagggatattatagaaaaCTCTTAGTGTAACAC-AA-----TCAG----T-TT-------TTGTTACATTAAG------G------GTT-------GTCATCGCAATCCTTAGTGTttgtt
gi|6 : CCCTTAGTGTAAC-AA-A-A-T-------GTTTTT--G---T--------------------------AACA-------C--TAAG--GAT-TGCGATGAC--------------A-ACCCTTAATGT---AACAAAAACT-------GA---------T---TGTGTTACACTAAGAGtacaaaaacattttgttacactaaggggcaatatgtgacatattgttgcaatttgtaataaaatttagaaaatcgtcttctctataatatccctacatattatggcaaattacaaatgtatctgtttaatactgatacgtattgttaatgcaactgccttgaaatgggggtggcatggggagggttggtgaggggctaatatagtgctacccatgtccatctgttgtaccatccgtccatccgtctgtccacccgttgttctgtacataacaatttcagttacggtcagtatcactgctactataaatagaaaatccctgtcaacgtttacaagtattattttgcatcggata
gi|6 : A---TACA-----TT----------TGTAATTTGCCATAAT-ATGTAGGGATATTATAGAGAAGACGA-TTTTCTAAATT-TTAT---TA-CAAATTGCAA----C--A-ATA----TGTCACAT-ATT-GCCCCTTAGTGTAACAA-AA-----T--G----T-TT-------TTGTAACACTAAGGATTGCG------A-T-------GA-----CAACCCTTAATGTAgcaatatgtgacatattgttgcaatttgtaataaaatttagaaaatcgtcttctctataatatccctacatattatggcaaattacaaatgtatctgtttaatactgatacgtattgttaatgcaactgccttgaaatgggggtggcatggggagggttggtgaggggctaatatagtgctacccatgtccatctgttgtaccatccgtccatccgtctgtccacccgttgttctgtacataacaatttcagttacggtcagtatcactgctactataaatagaaaatccctgtcaacgtttacaagtattattttgcatcggata
gi|6 : ctcttagtgtaacacaatcagtttttgtATCCGA--TG---CAAAATAATACTTGT-AAACGTTGACAGGGATTTTCTATT-TAT-A-GT--AGCAGTGATACTGACCGTAA-CTG-AAATTGTTATGTACAG-AACAACGGGTGGACA-GA-------------CGGAT------------GGA------------C-------------GGATGGTAC-A--ACAGATGGAC----ATGGGTAGCACTATATTAG-CC-------------CC-----------------TC---A---C--CActgtttaatactgatacgtattgttaatgcaactgccttgaaatgggggtggcatggggagggttggtgaggggctaatatagtgctacccatgtccatctgttgtaccatccgtccatccgtctgtccacccgttgttctgtacataacaatttcagttacggtcagtatcactgctactataaatagaaaatccctgtcaacgtttacaagtattattttgcatcggata
gi|7 : ctcttagtgtaacacaatcagtttttgttacattaagggttgtcatcgcaatccttagtgttacaaaaacattttgttacactaaggggcaatatgtgacatattgttgcaatttgtaataaaatttagaaaatcgtcttctctataatatccctacatattatggcaaattacaaatgtatctgtttaatactgatacgtattgttaatgcaactgccttgaaatgggggtggcatggggagggtTGAAGATCTGTTT-A------ACTTGCATCGGA--TG---CAAAATAATGCCGGT-AAGCGTTGACAGCGATTTTCTATT-T-T-T-ATCAA-CAATGGCATTAACCTTAACCTT-AAATCGTGACGTACGG-A-------------A-GAAGGGGCGGACACTCGGAT------------AGA------------C-------------GAACAGTAC-G--ACGGACGGAC----TTAGGTAGCATTATA------C-------------CC-----------------CCA--A---C--CCCA-C-CC----AGCCCTT----CTC---AAGC-----TTG---------CATAA------ACAAT-ACGTATCAGTATTA---AACAGATAAGTTGTATAAACT-GTG----TA--AT-TTGCCA----T--A-ATA----TGTa
gi|7 : -----------------TTA--A---A--CAGA-T-AA----G----TT----GTA---TAAA-----CTG---------TGTAATTTGCCATAAT-ATGTAG-----------AAAAGGTGA-TTACCTAAGTT-TTGT---TA-TATATTGCAA----C--A-ATA----TGTCTCAT-ATC-GCACCTTAATGTAACAC-AA-----T--A----T-TT-------TTTTTACATTAAG------G------G-T--------T-----TAATGCTTagaaaaggtgattacctaagttttgttatatattgcaacaatatgtctcatatcgcaccttaatgtaacacaatattttttttacattaagggtttaatgctttcactggaaatagttattgatactgtt
gi|8 : tgaagatctgtttaacttgcatcggatgcaaaataatgccggtaagcgttgacagcgattttctatttttatcaacaatggcattaaccttaaccttaaatcgtgacgtacggaagaaggggcggacactcggatagacgaacagtacgacggacggacttaggtagcattatacccccaaccccacccagcccttctcaagcttgcataaacaatacgtatcagtaTAACGGTT--ATTT----ATAACCACAACCCTTAGTGTAAC-AA-A-AAT-------A----A--G---TTT------------------------AAGA-----------AAA--TCT-TATTGTGAT--------------G-A----TAA-AT---A--------T-------AT---------T---TTTGTCACACTAAGGGTTGACGA-ATATGA---ATTGT----ATA-GTCATTCA--TTAATAATTTGTTAACA-----ACAGACCTAATGTTTACATACTTGTTGGCCCTTATAC-TTAA----------------TGAAAGTTAATATGGTATAAATAATACAA-CCAACACGAAATGTAACACACACACCATATAAACATAT------TCCTATATTTAATCTAAGCAATTGTACAGTACAATTTCTTGATTTCATCAGAGATATAAAATACTATTATCTGTC-------TCATACATGTTCCTACCTAGTATATGAACAAAAGAACAGTTC-AACGTGTTACCTGTTCCCTTTTTAGCTtcactggaaatagttattgatactgtt
gi|9 : -------------GGACAGTAC-G--ACGGACGGACGGAGATGGGTAGCACTATATCCCATC-------------CCATTTTAAGACGGTGGTTTAA--A---CAACACG-T-AACAACA----TTAAACAAA---TAAA-----TTGTATAAATTGTGTAATTTGCTATAAT-ATATAGAGATATCATAGAGAAGTTGA-GTTCTGAAATT-TTGT---TA-CATATTGCCA----CTTA-GTT----TAACA-AA-ATATG----TT--TTTAACAA-AA-----T--A----T-GT-------TTGTTAAACTAAG------G------G-TTGCA---GTTA---TAACCCCTAGTGT
gi|9 : ATATGTTTGTTAAACTAAGGGTTGCAGTT----AT------AACCCCTAGTGTTAC-AA-------------------------------------------------------A-------TATTGA---TTT-TG-TAGGGT--------------A-A----CAA------A--------T-------AT---------TGAGTTTGTTACACTAAGGGATGtacaaatattgattttgtagggtaacaaatattgagtttgttacactaagggatgttgttacattaaagccacaaagcatttacacacttgatatagtata
gi|9 : ggacagtacgacggacggacggagatgggtagcactatatcccatcccattttaagacggtggtttaaacaacacgtaacaacattaaacaaataaattgtataaattgtgtaatttgctataatatatagagatatcatagagaagttgagttctgaaattttgttacatattgccacttagtttaacaaaatatgtttttaacaaaA----TGTAACAACAT----CCCTTAGTGTAACAA-AC-----TCAA----T-AT-------TTGTTACCCTAttgttacattaaagccacaaagcatttacacacttgatatagtata
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|17 ): AAAATGCTATGGTTAAAAAAAGCGGATTTTATAAAAATGATTTTTTGTCGGATTATCATGCGCGATAATAGCTATGTATGATTTGAGG
Unaligned ( gi|19 ): ACTAAAACGATCAATAGTAAAATTCATCAGATTGTTAAACAAGTATTAATGAAACA
Alignments
lowQualScore : 111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 333333333333333333333333333 333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333 1 22222 11 111111 11 222 4444444444444444444 1 1 1 1 222222 3333333 11 1 222222 222 33 1 11 1 11 111111 44444444444 66666666666666666666666666666666666 11111111 22222222222222222222222 444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444 1111 1111 22222222222222222222222 444444444444444444444444444444
lowQualScore : 1 888888888888888888888888888 0 2 2 5 333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333 44 3 888 3 55555 33 2 1 3 7 1 555555 88 1 333 6 7 1 0 7 4444444444444444444 1 1 5 5 5 5 1 1 999999 1 1 2222222 66 1 5 1 888888 1 1 111 1 1 1 00 1 1 1 1 1 1 1 1 1 2 77 0 8 1 11 8 6 666666 66 9999 5 5 44444444444 6 88888888888888888888888888888888888 88888888 77777777777777777777777 4 66 9999 444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444 0 8 11 3 888 3 0 2 3 444 44 3333 8 8 1 44 55 55 5555 2 22222222222222222222222 999999999999999999999999999999
lowQualScore : . ........................... . . . . .............................................................................................................................. .. . ... . ..... .. . . . . . ...... .. . ... . . . . . ................... . . . . . . . . ...... . . ....... .. . . . ...... . . ... . . . .. . . . . . . . . . . .. . . . .. . . ...... .. .... . . ........... . ................................... ........ ....................... . .. .... ...................................................................................................... . . .. . ... . . . . ... .. .... . . . .. .. .. .... . ....................... ..............................
lowQualScore : 0 222222222222222222222222222 2 5 7 3 333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333 22 6 444 3 22222 88 5 2 2 3 0 777777 33 0 333 7 3 0 7 3 0000000000000000000 0 0 5 0 0 0 0 0 000000 0 0 5555555 55 0 5 0 555555 0 0 000 0 0 0 55 0 0 0 0 0 0 0 0 0 8 00 8 8 0 00 0 7 444444 99 8888 0 0 88888888888 2 22222222222222222222222222222222222 11111111 22222222222222222222222 4 11 4444 666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666 2 8 11 6 555 6 4 4 3 000 33 2222 0 6 0 66 55 00 3333 7 22222222222222222222222 888888888888888888888888888888
consensus : GAAAATCGTATTCCAGNGATAAGTATATTTTTGTTACACTAAGGGTT--AT--T-T--------------ATAACCGCAACCC-TTAGTGTAAC-AA-AA--T-------A----A--G---T--------------------------AACA-------CA--GTAAG----TCT-TGNTGTGNCG-A----TAA-GT---A--------T-------AT-T---TT--TGTTACACTAAGGGT-TG--ACGA-ATACGA---ATTGTA--TAGTCATTCATTAGTAATTTATTAACAAAATCACAGA--CCAAACGTTTACA---TACTCGTTGGACCTTATACATTAAAGATGTAAGAA--TGTA--TTGAAAGTTAATNTGGCATAAATNATACAAGCCAACACGAAATGTAACACGCACACCNTATAANCATATTCCTAGTCCTATATTTNATCTAAGCAATTGTACAGTACAANTTCTTGATTTCACCAGAGATATAAAATACTATTATCTGTCTCTCATTTCATACATGTTCCTACCTAGTATATGANCGAAAGNACAGTTCAAANGTGTTACCTGTTCCCTTTNTAGCTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGAGAGAGAAAAATATCGAAACGACATGAATGCCCCCCNCCCCACACATCTTNCNATTNTTCGCAAACTCTGTCCGAGGTATNTTGNTTCTGAACACNTGCATGAAGTTTCATCAAAATTGNATTAAAANAAGGNCGGTCGAGCGGTNGCNGTGNTTTTCTGCTTTTAGTAACGATGACGTTGACCTTGACCCGAAAA-TCGTGAAACGCAAACGCATCCGAAGTATCTCTG-TTCTGAACATCTGTGT-A------ACTTGCATCGGA--TG---NAAAATAATGCCGGT-AAGCGTTGACAGCGATTTTCTATT-T-T-A-GTA-A-CAGTGACATTGACCTTGACCTGAAAATCGTGACGTACGGA-------------A-----G-A-------------CGGAC--------GGA------------CG---------GACGGTAC-G--ACGGACGGAC----ATGGGTAGCACTATATC---CCC----C-----------------T-CA--AC--C--ACA-T---AA----A----T-----TGTA---TAA----A-----T-------------TGCGTAATTTGCCATAAT-ATGTA-GGGATATTATAGAGAAGATGA-TTNCCTAAATT-TTGT---TACATATTGCNAC--AATATGTCA--CAT-AT-CGCCCCTTAGTGTAACAA-AA-----T--A----TTT-------TTGTTACACTAAG------G------G-T-------GT-----CAACCCTTAGTGTA
Reference ( family-3843 ) : GAAAATCGTATTCCAGNGATAAGTATATTTTTGTTACACTAAGGGTT--AT--T-T--------------ATAACCGCAACCC-TTAGTGTAAC-AA-AA--T-------A----A--G---T--------------------------AACA-------CA--NTAAG----TTT-TGNTGCGNCG-A----TAA-GT---A--------T-------AT-T---TT--TGTTACACTAAGGGT-TG--ACGA-ATACGA---ATTGTA--TAGTCATTCATTAGTAATTTATTNACAAAATTACAGA--CCNAACGTTTACA---TACTTGTTGGNCCTTATGCATTAAAAATGTAAAAA--TGTA--TTGAAAGTTAATNTGGCATAAATNATACAAGCCAACACGAAATGTAACACGCACACCNTATAANCATATTCCTAGTCCTATATTTNATCTAAGCAATTGTACAGTACAANTTCTTGATTTCACCAGAGATATAAAATACTATTATCTGTCTCTCATTTCATACATGTTCCTACCTAGTATATGANCGAAAGNACAGTTCAAANGTGTTACCTGTTCCCTTTNTAGCTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGAGAGAGAAAAATATCGAAACGACATGAATGCCCCCCNCCCCACACATCTTNCNATTNTTCGCAAACTCTGTCCGAGGTATNTTGNTTCTGAACACNTGCATGAAGTTTCATCAAAATTGNATTAAAANAAGGNCGGTCGAGCGGTNGCNGTGNTTTTCTGCTTTTAGTAACGATGACGTTGACCTTGACCCGAAAAATCGTGAAACGCAAACGCATCCGAAGTATCTCTG-TTCTGAACATCTGTGT-A------ACTTGCATCGGA--TG---NAAAATAATGCCGGT-AAGCGTTGACAGCGATTTTCTATT-T-T-A-GT--A-CAGTGACATTGACCTTGACCTGAAAATCGTGACGTACGGA-------------A-----G-A-------------CGGAC--------GGA------------CG---------GACGGTAC-G--ACGGACGGAC----ATGGGTAGCACTATATC---TCC----C-----------------T-CA--AC--C--ACA-T---AA----A----T-----TGTA---TAA----A-----T-------------TGCGTAATTTGCCATAAT-ATGTA-GGGATATTATAGAGAAGATGA-TTNCCTAAATT-TTGT---TACATATTGCNAC--AATATGTCA--CAN-AT-NGCCCCTTAGTGTAACAA-AA-----T--A----TTT-------TTGTTACACTAAG------G------G-T-------GT-----CAACCCTTAGTGTA
gi|1 : GAGAATCTTATTCCAGGGATAGGTATATCTTTGTTACACTAAGGGTT--AT--T-T--------------ATAACTGCAACCC-TTAGTGTAAC-AA-AA--T-------A----A--G---T--------------------------AACA-------CA--ATAAG----TTT-TGATAAGACG-A----TAA-GT---A--------T-------AT-T---TT--TGTTACACTAAGGGT-AG--ACGA-ATATGA---ATTGTA--TAGTCATTCATTAGTAATTTATTTACAAAATTACAGA--CCAAACGTTTACA---TACTTGTTGGACCTTATGTATTAAAAATGTAAAAA--TGTA--TTAAAAATTAATTTGACATAAATTAT-CAAGCCAACACAAAAT-TAA-ATGTACACTTTATAATCATATTCCTAGTCCTATATTTTATCTAAGCAATTGTACAGTACAAGTTCTTGATTTCACCAGAGATATAAAATACTATTATCTGTCTCTCATTTCATACATGTTCCTACCTAGTATATG-TCGAAAATACAGTTCAAAAGTGTTACTT------TTTGTAGCT
gi|1 : AAAGAGAGAAAAATATCAAAACGACATGAATGTCCCCCACCCCACACATCTTACAATTGTTCGCAAACT-TGTCCGAGGTATCTTGGTTCTGAACACCTACATGAAGTTTCATCAAAATTGGATTAAAAGAAGGGCAGTCAAGCGGTAGCGGTGATTTTCTGCTTTTAGTAATGATGACATTGACCTTGACCCGAAAAATCGTGAAATGCAAACGCATCCGAATTATCTCTG-TTCTGAACATCTGTGT-ATTTGTTACTTGCATCTGA--TG---GGAAATAATGCCGGT-AATTGTTGACAGCAATTTTCTATT-T-T-ATGTA-A-CAGTGACATTGACCTTGACCTGAAAATCGTGATTTACGAA-------------A-----A-A-------------CAGAA--------GGA------------CA---------GACGGCAC-G--ACAGACGGAC----ATGGGTAGCACTATATC---TCC----C-----------------T-CA--AC--C--ATA-T---AA----A----T-----TGTA---TAA----A-----T-------------TGTGAAATTTGCCATAATAATGCA-GGGATATTATAGAGAAGATGA-TTAACTAAATT-TTGT---TGCATATTGCAAC--AATATGTCA--CAA-AT-AGCCCTTTAGTGAAACAA-AA-----C--A----TTT-------TTGTTACACTAAG------G------G-T-------GT-----CAACCCTTAGTGTAacaatttagtaatacctcatgattcatgactaatccctttccaaaataaccaaaacattcactgaaataatgttttgtttgtaagacttcttacttttctttttataattatcatttttccaatcttccacagcatatttacagtcacatttgttagttaaaatatacacgaaaaaaagagagaaaaatatcaaaacgacatgaatgtcccccaccccacacatcttacaattgttcgcaaacttgtccgaggtatcttggttctgaacacctacatgaagtttcatcaaaattggattaaaagaagggcagtcaagcggtagcggtgattttctgcttttagtaatgatgacattgaccttgacccgaaaaatcgtgaaatgcaaacgcatccgaattatctctgttctgaacatctgtgtatttgttacttgcatctgatgggaaataatgccggtaattgttgacagcaattttctattttatgtaacagtgacattgaccttgacctgaaaatcgtgatttacgaaaaacagaaggacagacggcacgacagacggacatgggtagcactatatctccctcaaccatataaattgtataaattgtgaaatttgccataataatgcagggatattatagagaagatgattaactaaattttgttgcatattgcaacaatatgtcacaaatagccctttagtgaaacaaaacatttttgttacactaagggtgtcaacccttagtgtaccca
gi|10 : gagaatcttattccagggataggtatatctttgttacactaagggttatttataactgcaacccttagtgtaacaaaataagtaacacaataagttttgataagacgataagtatatttttgttacactaagggtagacgaatatgaattgtatagtcattcattagtaatttatttacaaaattacagaccaaacgtttacatacttgttggaccttatgtattaaaaatgtaaaaatgtattaaaaattaatttgacataaattatcaagccaacacaaaattaaatgtacactttataatcatattcctagtcctatattttatctaagcaattgtacagtacaagttcttgatttcaccagagatataaaatactattatctgtctctcatttcatacatgttcctacctagtatatgtcgaaaatacagttcaaaagtgttactttttgtagctacaatttagtaatacctcatgattcatgactaatccctttccaaaataaccaaaacattcactgaaataatgttttgtttgtaagacttcttacttttctttttataattatcatttttccaatcttccacagcatatttacagtcacatttgttagttaaaatatacacgaaaaACGC-TTAGTGTAAC-AACAA--TTGTTTCTA----A--GGGTT--------------------------GACA-------CC--GTAA-----CCT-TAGTGTATCA-A-----AA------A--------T-------GT-T---TT--TGTTATACTAAGGGT-TGCCACAA-Accca
gi|10 : tattgtatttatattcgtcataccattgtttatagaatgttatggttataaaaaagcggattttatgccggattatcatgatcaataatagctatgtatgcCCCTTAGTATAACAA-AAA----C--A----TTT-------TTGATACACTAAGGTTAC-G------G-T-------GT-----CAACCCTTAGatgttttgttcatgtattgacatttgattataaaaagggttcatttagtgtaacatttcttttagaaatttaattatccctgctatatgtacgaaattggagcatatagtttt
gi|11 : tattgtatttatattcgtcataccattgtttatagaatgttatggttataaaaaagcggattttatgccggattatcatgatcaataatagctatgtatgctttgtggcaaGAAAATCGTGTTTCGGCGACAAGTATATGTTTGTTTTACTAAGGGTT--AT--T-T--------------ATAACCGCAAACA-TTAGTGTAAG-GA-AA--T-------A----A--G---T--------------------------aaacaattgttgttacactaagcgtatgttttgttcatgtattgacatttgattataaaaagggttcatttagtgtaacatttcttttagaaatttaattatccctgctatatgtacgaaattggagcatatagtttt
gi|12 : tnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaaattacacaaattaaagcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaGAAAATCGTATTCCAAAGATAAGTATATTTTCGTTACACTAAGGGTT--GT--T-T--------------ACAACTGCAACCC-TT
gi|13 : nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaCTCTTAGTGAAACAA-AACCCCTT--AGGTTTTT-------TCGTTACACTTAG------G------G-TTACG---GTTG---CGATCCTTAGTGTA
gi|13 : ggtaaTTTTGTTACACTAAGGATC--GC---------------------AACCGTAACCC-TAAGTGTAAC-GA-AA--A-------A----A--acaaaatgggttttgttacacttaggaccgcaacgtaactcttagtgtaacaacacttgttacactaagcgtatgtttggcacatgtatagacatttgataataaaacgggttctctaagtaaaaccttttttaactagaaatttatttatccctgctatgaaatg
gi|13 : ggtaactcttagtgaaacaaaaccccttaggTTTTCGTTACACTTAGGGTT--ACGGT-T--------------------GCGATCC-TTAGTGTAAC-AA-AA--T-------G----G--G---TTTTGTTACACTTAGG-----------ACCG-------CAACGTAAC----TCT-TAGTGTAACA-A----CA-------------------------------CT--TGTTACACTAAGCGTATG--TTTG-GCACA------TGTA--TAGACATTTGATAATAAtgggttttgttacacttaggaccgcaacgtaactcttagtgtaacaacacttgttacactaagcgtatgtttggcacatgtatagacatttgataataaaacgggttctctaagtaaaaccttttttaactagaaatttatttatccctgctatgaaatg
gi|13 : ggtaactcttagtgaaacaaaaccccttaggttCCTTAGTGTAACAA-AA-----TG-G----GTT-------TTGTTACACTTAG------GACCGCAA-C-------GT------AACTCTTAGTGTAaacgggttctctaagtaaaaccttttttaactagaaatttatttatccctgctatgaaatg
gi|14 : ggtaactcttagtgaaacaaaaccccttaggttttttcgttacacttagggttacggttgcgatCATTGACCTTGACTTGAAAA-TCGTGAAACGCCTCCGCATCTGTAGTATC-------------ATCTGTGT-A------ACTTGCATCGGA--CG---GAAAATAATGCCGGT-AAGCATTGACAGCGATTTTCTATT-T-TAA-GT--ATCAGTGATATTGACCTTGACCTGCAAATCGTAACGTACGGA-------------AAAATGG-A-------------CAGACAAACGTATGGG------------CG---------AACGGTAC-G--ACAGACGGAC----AGGTGTAGCACTATATT---TCC----C-----------------acaacacttgttacactaagcgtatgtttggcacatgtatagacatttgataataaaacgggttctctaagtaaaaccttttttaactagaaatttatttatccctgctatgaaatg
gi|15 : TTACATTAAGG-----AT--T-G--------------ACA-CCGCAACCT-TCAGTGTAAC-AA-Acat
gi|15 : ATGTATCAAACAT-AT-G----CTTAGTGTAACAA-----------------------------TTACATTAAG------G------A-TTGACACCG------CAACCTTCAGTGTAttgttacactaagcatatgtttgatacatgtattgacatttgattatacaacagattcagttagggttataatgtttgttcaactagaaatttatcctgctatggaatggggacatatggtgt
gi|16 : tttgt------G------A-T-------GT-----CAACCCTTAGTGTAgtattgacatttgattatacaacagattcagttagggttataatgtttgttcaactagaaatttatcctgctatggaatggggacatatggtgt
gi|16 : atgc--TGTTACACTAAGGGT-TG--ACacatttgttacatgtattggcatttgattataaaacaggttcatttagtgtaacaattttttttttttaaacttagaaatttatttatccct
gi|16 : atgcgatTGTAACAA-A-------------------------TGTTACACTAAG------G------G-T-------tttgttacatgtattggcatttgattataaaacaggttcatttagtgtaacaattttttttttttaaacttagaaatttatttatccct
gi|18 : atgcgatgtcaGAAATTCTTATTCCAGGGAAAGGAATATTTT-GTTACACCAAGGGTT--AT--T-T--------------AT-ACCGCAAtgtattggcatttgattataaaacaggttcatttagtgtaacaattttttttttttaaacttagaaatttatttatccct
gi|2 : aGAACATCGTACTTCTTTGATAAATATATTTTTGTTACACTAAGGATT--AT--T-TNNNNNNNNNNNNNNNNNNNNNNNNNNN-NNNNNNNNNN-NN-NN--N-------N----N--N---N--------------------------NNNN-------NN--NNAAGACAATCT-TATTTCTTTG-A----TAA-AT---A--------T-------AG-T---TT--TGTTACACTAAGGGT-T
gi|20 : tagagtaatgctatattagtaatagcatcatcttgagttataattgtcagaaaaggaatacttatgttgcatggggaaggggggtcgagattcagggagaaaagggtcaataacaagttcatcaaaattagaataatgcataaatactttcatttgtcactcattaatagttgtatcctgtttctcagatgttcaactcttgaaagtgacatagcgcgctctagttttattttggttttaaaactgcttcattttgtcaccatcgttataaaagcattcatctaaaagtaggctgacatcgcaatatatcataaaatgtgttttatcttggacatttgtagttatggaacattactaatacaattatcttagtgaaaataaataacattaacgaagagtaagtagactcatatcatctcaaactcttgtttaaaaaacgtaaataaacaaacttatataaaattacgaatctcctttaaatcttcggttttccacttcattattttaagttatttaccagtgttaagaaaaccgtccaacaaagtttttctaagggttgtttnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaaCGGC-------------A-----G-A-------------CAGAC--------GGA------------CG---------GACGA-ACGG--ACGGACGGAC----AGTGATAACATTGTa
gi|3 : GTAA--ATGACGTTGACCTTGACCCGAAAA-TCGTGAAACACAAACGCATCTGAAGTCTCACTG-TTCTGAACATCTGTGT-A------TCTTACATTGGA--GG---GGAAATAATACTGGT-AAGCGTTGACAGCGATT---TATC-T-T----------AGTGACATTGACCTTAACCTGAAAATCGTGATGTACGGA-------------A-----GAA-------------CGGAC--------GGACAGACGGATAGGCG---------AACGGTAC-G--ACGGACGGAC----ATGGGTAGCACTATA-C---TCC----C-----------------T-CACCAC--C--ACACC---CA----A----T-----GGCAATTTCA----AGGCTGT-------------TGCATAA------ACAAT-ATGTA-TCAGTATTAAACATATAA--A-TTGTATAAATT-GTG----TA-AT-TTGCCAT--AATATGTtcat
gi|3 : atttattgccgcaacc-----------------T-TA--AA--C--ATA-T---AA----A----T-----TGTA---TAA----A-----T-------------TGTGTAATTTGCCATAAT-ATGTA-GGGATGTTATAGAGAAGATGA-TTACCTAAATT-TTGT---TACATATTGCAAC--AATATGTCA--CAT-AT-GGACCCTTAGTGTAACAA-AA-----T--A----T------------TTACACTAAGGGTTGCG------G-T-------GT-----CAACCCCTGGTGTAagggatgttatagagaagatgattacctaaattttgttacatattgcaacaatatgtcacatatggacccttagtgtaacaaaatatttacactaagggttgcggtgtcaacccctggtgtaacagaaactgattgacaccgcaacccttagtgtaacagttgttacaattgttactgtttcactaagggttgcaacagacgtggcaaccagtacttacaagaatttaaacaatcatatattctaaacgtagacaatgtatcgtgaatgctatacagtatagatataagaacttgtaacttgtaagtcgaaataaacttctgtattt
gi|3 : atttattgccgcaaccgtaaatgacgttgaccttgacccgaaaatcgtgaaacacaaacgcatctgaagtctcactgttctgaacatctgtgtatcttacattggaggggaaataatactggtaagcgttgacagcgatttatcttagtgacattgaccttaacctgaaaatcgtgatgtacggaagaacggacggacagacggataggcgaacggtacgacggacggacatgggtagcactatactccctcaccaccacacccaatggcaatttcaaggctgttgcataaacaatatgtatcagtaTGTTACACTAAGGGTT--GC--GGT--------------GT-----CAATCAGTTTCTGTTAC-AC-CA--G-------G----G--G---TT-------------------------GACA-------CC--GCAAC----CCT-TAGTG-----------TAA-AT---A--------T--------------TT--TGTTACACTAAGGGT-acagaaactgattgacaccgcaacccttagtgtaacagttgttacaattgttactgtttcactaagggttgcaacagacgtggcaaccagtacttacaagaatttaaacaatcatatattctaaacgtagacaatgtatcgtgaatgctatacagtatagatataagaacttgtaacttgtaagtcgaaataaacttctgtattt
gi|3 : atttattgccgcaaccgtaaatgacgttgaccttgacccgaaaatcgtgaaacacaaacgcatctgaagtctcactgttctgaacatctgtgtatcttacattggaggggaaataatactggtaagcgttgacagcgatttatcttagtgacattgaccttaacctgaaaatcgtgatgtacggaagaacggacggacagacggataggcgaacggtacgacggacggacatgggtagcactatactccctcaccaccacacccaatggcaatttcaaggctgttgcataaacaatatgtatcagtattaaacatataaattgtataaattgtgtaatttgccataatatgtagggatgttatagagaagatgattacctaaattttgttacatattgcaacaatatgtcacatatggTTACACTAAGGGTT--GCG-G-T--------------GT-----CAACCC-CTGGTGTAAC-AG-AAACT-------G----A--T---T--------------------------GACA-------CC--GCAAC----CCT-TAGTGTAACA-G----TTG-TT---A--------CA------AT-TG--TTACTGTTTCACTAAGGGT-TG---CAACAGACG-----TGGCAACCAGT-ACTTACAAG-AATTTA--AAC--AATCATATATTCTAAACGTAGACAATGTA-TCG-TGAATGCTATACAGTATAGATATAAGAACTTGTAACTTGTAAGTgttgttacaattgttactgtttcactaagggttgcaacagacgtggcaaccagtacttacaagaatttaaacaatcatatattctaaacgtagacaatgtatcgtgaatgctatacagtatagatataagaacttgtaacttgtaagtcgaaataaacttctgtattt
gi|3 : atttattgccgcaaccgtaaatgacgttgaccttgacccgaaaatcgtgaaacacaaacgcatctgaagtctcactgttctgaacatctgtgtatcttacattggaggggaaataatactggtaagcgttgacagcgatttatcttagtgacattgaccttaacctgaaaatcgtgatgtacggaagaacggacggacagacggataggcgaacggtacgacggacggacatgggtagcactatactccctcaccaccacacccaatggcaatttcaaggctgttgcataaacaatatgtatcagtattaaacatataaattgtataaattgtgtaatttgccataatatgtagggatgttatagagaagatgattacctaaattttgttacatattgcaacaatatgtcacatatggacccttagtgtaacaaaatatGCAACCC-TTAGTGAAAC-AGTAA--C-------A----ATTG---T--------------------------AACAACTGTTACA--CTAAG----GGT-TGCGGTGTCA-A----TCA-GT-----------------------T---TC--TGTTACACCAGGGGT-TG--ACcgaaataaacttctgtattt
gi|3 : atttattgccgcaaccgtaaatgacgttgaccttgacccgaaaatcgtgaaacacaaacgcatctgaagtctcactgttctgaacatctgtgtatcttacattggaggggaaataatactggtaagcgttgacagcgatttatcttagtgacattgaccttaacctgaaaatcgtgatgtacggaagaacggacggacagacggataggcgaacggtacgacggacggacatgggtagcactatactccctcaccaccacacccaatggcaatttcaaggctgttgcataaacaatatgtatcagtattaaacatataaattgtataaattgtgtaatttgccataatatgtagggatgttatagagaagatgattacctaaattttgttacatattgcaacaatatgtcacatatggacccttagtgtaacaaaatatttacactaagggttgcggtTAGAATATATGA-TTGTTTAAATTCTTGTAAGTACTGGTTGCCAC--G-TCTGTTG--CAA-------CCCTTAGTGAAACAGTAA-----C--A----ATTGTAACAACTGTTACACTAAGGGTTGCG------G-T-------GT-----CAATCaacagacgtggcaaccagtacttacaagaatttaaacaatcatatattctaaacgtagacaatgtatcgtgaatgctatacagtatagatataagaacttgtaacttgtaagtcgaaataaacttctgtattt
gi|4 : atttattgccgcaaccgtaaatgacgttgaccttgacccgaaaatcgtgaaacacaaacgcatctgaagtctcactgttctgaacatctgtgtatcttacattggaggggaaataatactggtaagcgttgacagcgatttatcttagtgacattgaccttaacctgaaaatcgtgatgtacggaagaacggacggacagacggataggcgaacggtacgacggacggacatgggtagcactatactccctcaccaccacacccaatggcaatttcaaggctgttgcataaacaatatgtatcagtattaaacatataaattgtataaattgtgtaatttgccataatatgtagggatgttatagagaagatgattacctaaattttgttacatattgcaacaatatgtcacatatggacccttagtgtaacaaaatatttacactaagggttgcggtgtcaacccctggtgtaacagaaactAGAAAGAGAAAAATATCGAAACGACATGAATACCCCCTCCCTC---TATCTTTCTATTTTTTGCAAAaacgtagacaatgtatcgtgaatgctatacagtatagatataagaacttgtaacttgtaagtcgaaataaacttctgtattt
gi|4 : TTTCTATTTTTTGCAAAGGTGAT------CTTGACTCAAGAATCCAT-AAGCGCAAACTCGTCCGAAGTATAT-TGTTTCTGAACACGTGTATGA------AGTTTCATCAAAATTGTATTAAAATAAGGTCGGTCGAGCGGTTACTGTGCTTTTCTGCTAT-A-A-GTA-A-CGATGAC--TGACTTTGACCAGAAAGTCGTGAggtgatcttgactcaagaatccataagcgcaaactcgtccgaagtatattgtttctgaacacgtgtatgaagtttcatcaaaattgtattaaaataaggtcggtcgagcggttactgtgcttttctgctataagtaacgatgactgactttgaccagaaagtcgtgaaacgctaacgtattcaaagtatctctgttctgaacatctgtaacttgcatgggatggaaaataatgccggtaaacgttgaaatcgattttctattttgagtaactgtgacgttgaccttgacctgaaaatcgttacgtacggaaggacggatggacgatacgcaaaagacggacatgggtagcactatatcccattcaccaccttaccccaacccccatgtcaagccggttgcataaataatacgtatcggtattaaacagatgaattgtataaattgtgtaatttgtcataatatgtagagataatatagagaagatgatttccttgattttgttacatatttcaacaatatgtcacatatcgcccttaagtgtaacaaaatatttttgttacactaacagttgcggtgacaagggagactttgttagtaaacgttttattaaatg
gi|4 : agaaagagaaaaatatcgaaacgacatgaataccccctccctctatcCGCAAACTC-GTCCGAAGTATATTGTTTCTGAACACGTGTATGAAGTTTCATCAAAATTGTATTAAAATAAGGTCGGTCGAGCGGTTACTGTGCTTTTCTGCTATAAGTAACGATGAC--TGACTTTGACCAG-AAAGTCGTGAAACGCTAACGTATTCAAAGTATCTCTG-TTCTGAACATC--TGT-A------ACTTGCATGGGA--TG---GAAAATAATGCCGGT-AAACGTTGAAATCGATTTTCTATT-T-TGA-GTA-A-CTGTGACGTTGACCTTGACCTGAAAATCGTTACGTACGGA-------------A----------------------GGAC--------GGA------------TG---------GACGATAC-GCAAAAGACGGAC----ATGGGTAGCACTATATC---CCA----T-----------------T-CACCAC--CTTACC-C---CA----A----CCCCCATGT----CAAGCCGG-----T-------------TGCATAA------ATAAT-ACGTA-TCGGTATTAAACAGATGA--A-TTGTATAAATT-GTG----TA-AT-TTGTCAT--AATATGTaacgctaacgtattcaaagtatctctgttctgaacatctgtaacttgcatgggatggaaaataatgccggtaaacgttgaaatcgattttctattttgagtaactgtgacgttgaccttgacctgaaaatcgttacgtacggaaggacggatggacgatacgcaaaagacggacatgggtagcactatatcccattcaccaccttaccccaacccccatgtcaagccggttgcataaataatacgtatcggtattaaacagatgaattgtataaattgtgtaatttgtcataatatgtagagataatatagagaagatgatttccttgattttgttacatatttcaacaatatgtcacatatcgcccttaagtgtaacaaaatatttttgttacactaacagttgcggtgacaagggagactttgttagtaaacgttttattaaatg
gi|4 : agaaagagaaaaatatcgaaacgacatgaataccccctccctctatctttctattttttgcaaaggtgatcttgactcaagaatccataag-----------------T-TA--AA--C--AGA-T---GA----A----T-----TGTA---TAA----A-----T-------------TGTGTAATTTGTCATAAT-ATGTA-GAGATAATATAGAGAAGATGA-TTTCCTTGATT-TTGT---TACATATTTCAAC--AATATGTCA--CAT-AT-CGCCCTTAAGTGTAACAA-AA-----T--A----TTT-------TTGTTACACTAAagagataatatagagaagatgatttccttgattttgttacatatttcaacaatatgtcacatatcgcccttaagtgtaacaaaatatttttgttacactaacagttgcggtgacaagggagactttgttagtaaacgttttattaaatg
gi|4 : agaaagagaaaaatatcgaaacgacatgaataccccctccctctatctttctattttttgcaaaggtgatcttgactcaagaatccataagcgcaaactcgtccgaagtatattgtttctgaacacgtgtatgaagtttcatcaaaattgtattaaaataaggtcggtcgagcggttactgtgcttttctgctataagtaacgatgactgactttgaccagaaagtcgtgaaacgctaacgtattcaaagtatctctgttctgaacatctgtaacttgcatgggatggaaaataatgccggtaaacgttgaaatcgattttctattttgagtaactgtgacgttgaccttgacctgaaaatcgttacgtacggaaggacggatggacgatacgcaaaagacggacatgggtagcactatatcccattcaccaccttaccccaacccccatgtcaagccggttgcataaataatacgtatcggta--T-T--------------GTCACCGCAACTG-TTAGTGTAACAAA-AA--T-------ATTT-T--G---T--------------------------TACA-------C---TTAAG--------------GGCG-A----TAT-GTGACA--------T-------AT-T---GT--TGcagttgcggtgacaagggagactttgttagtaaacgttttattaaatg
gi|5 : agaaagagaaaaatatcgaaacgacatgaataccccctccctctatctttctattttttgcaaaggtgatcttgactcaagaatccataagcgcaaactcgtccgaagtatattgtttctgaacacgtgtatgaagtttcatcaaaattgtattaaaataaggtcggtcgagcggttactgtgcttttctgctataagtaacgatgactgactttgaccagaaagtcgtgaaacgctaacgtattcaaagtatctctgttctgaacatctgtaacttgcatgggatggaaaataatgccggtaaacgttgaaatcgattttctattttgagtaactgtgacgttgaccttgacctgaaaatcgttacgtacggaaggacggatggacgatacgcaaaagacggacatgggtagcactatatcccattcaccaccttaccccaacccccatgtcaagccggttgcataaataatacgtatcggtattaaacagatgaattgtataaattgtgtaatttgtcataatatgtagagataatatagagaagatgatttccttgattttgttacatattt------ATTTGCATCGGA--TG---CAAAGTAATACCCGT-AAGCGTTGACACCGATTTTCTA------------------TGACATTGACCTTGTCCT-AAAATCGTGACGTACAGA-------------A-----G-AACGGG--------CGGAC--------AGA------------CGGATAGGCAAGACGGTAT-G--ACGGACGGAC----ATGGGTAGCAATATATC---CTCACCAC-----------------TGCA--AC--C---CA-TTTCAA----AGCGGT-----TGCA---C-G----G-----T-------------TGCGTAA------ACAAT-ATATATCAGA-ATTAAACAGA------------TAAATT-GTG----TA-AT-TTGCCAT--ACTATGTgggagactttgttagtaaacgttttattaaatg
gi|5 : A---TAA----A-----T-------------TGTGTAATTTGCCATACT-ATGTA-GGGATATTATAGAAAAGATAA-TTTCCTAAATT-GTGT---TACATATTGCAAC--AATATGTCG--CAT-AT-CGCCCCTTGGTGTAACAA-AA-----T--A----TTT-------TTGTTACACTTAG------G------G-T-------agggatattatagaaaagataatttcctaaattgtgttacatattgcaacaatatgtcgcatatcgccccttggtgtaacaaaatatttttgttacacttagggttgcggtgtaacataaactaattgtgttacactaagggttgcggtgtaacataaactaattttgttacactaagggttgcggaatcaacccttagtgtaacaattgtt
gi|5 : atttgcatcggatgcaaagtaatacccgtaagcgttgacaccgattttctatgacattgaccttgtcctaaaatcgtgacgtacagaagaacgggcggacagacggataggcaagacggtatgacggacggacatgggtagcaatatatcctcaccactgcaacccatttcaaagcggttgcacggttgcgtaaacaatatatatcagaattaaacagTTGTTACACTAAGGGTTG-AT--T--------------------CCGCAACCC-TTAGTGTAAC-AA-AA--T-------T----A--G---TTTATGTTACACCGCAACCCTTAGTGTAACA-------CA--ATTAG----TTTATGTTACACCGCAACCCTAA-GT---G--------TAACAAAAATAT---TT--TGTTACACCAAGG----G--GCGATATGCGACATATTGTtgcggtgtaacataaactaattgtgttacactaagggttgcggtgtaacataaactaattttgttacactaagggttgcggaatcaacccttagtgtaacaattgtt
gi|6 : atttgcatcggatgcaaagtaatacccgtaagcgttgacaccgattttctatgacattgaccttgtcctaaaatcgtgacgtacagaagaacgggcggacagacggataggcaagacggtatgacggacggacatgggtagcaatatatcctcaccactgcaacccatttcaaagcggttgcacggttgcgtaaacaatatatatcagaattaaacagataaattgtgtaatttgccatactatgtagggatattatagaaaagataatttcctaaattgtgttacatattgcaCTCTTAGTGTAACAC-AA-----TCAG----TTT-------TTGTTACATTAAG------G------GTT-------GTCATCGCAATCCTTAGTGTttgtt
gi|6 : CCC-TTAGTGTAAC-AA-AA--T-------GTTTTT--G---T--------------------------AACA-------C----TAAG----GAT-TGCGATGACA-ACCCTTAATGT---AACAAAAACT-------GA-T---TG--TGTTACACTAAGAGtacaaaaacattttgttacactaaggggcaatatgtgacatattgttgcaatttgtaataaaatttagaaaatcgtcttctctataatatccctacatattatggcaaattacaaatgtatctgtttaatactgatacgtattgttaatgcaactgccttgaaatgggggtggcatggggagggttggtgaggggctaatatagtgctacccatgtccatctgttgtaccatccgtccatccgtctgtccacccgttgttctgtacataacaatttcagttacggtcagtatcactgctactataaatagaaaatccctgtcaacgtttacaagtattattttgcatcggata
gi|6 : A---TAC----A-----T-------------T-TGTAATTTGCCATAAT-ATGTA-GGGATATTATAGAGAAGACGA-TTTTCTAAATT-TTAT---TACAAATTGCAAC--AATATGTCA--CAT-AT-TGCCCCTTAGTGTAACAA-AA-----T--G----TTT-------TTGTAACACTAAGGATTGCG------A-T-------GA-----CAACCCTTAATGTAgcaatatgtgacatattgttgcaatttgtaataaaatttagaaaatcgtcttctctataatatccctacatattatggcaaattacaaatgtatctgtttaatactgatacgtattgttaatgcaactgccttgaaatgggggtggcatggggagggttggtgaggggctaatatagtgctacccatgtccatctgttgtaccatccgtccatccgtctgtccacccgttgttctgtacataacaatttcagttacggtcagtatcactgctactataaatagaaaatccctgtcaacgtttacaagtattattttgcatcggata
gi|6 : ctcttagtgtaacacaatcagtttttgtATCCGA--TG---CAAAATAATACTTGT-AAACGTTGACAGGGATTTTCTATT-TAT-A-GT--AGCAGTGATACTGACCGTAA-CTG-AAATTGTTATGTACAGAACAACGGGTGGACA-----G-A-------------CGGAT--------GGA------------CG---------GATGGTAC-A--ACAGATGGAC----ATGGGTAGCACTATATTAG-CCC----C-----------------T-C---AC--C--Actgtttaatactgatacgtattgttaatgcaactgccttgaaatgggggtggcatggggagggttggtgaggggctaatatagtgctacccatgtccatctgttgtaccatccgtccatccgtctgtccacccgttgttctgtacataacaatttcagttacggtcagtatcactgctactataaatagaaaatccctgtcaacgtttacaagtattattttgcatcggata
gi|7 : ctcttagtgtaacacaatcagtttttgttacattaagggttgtcatcgcaatccttagtgttacaaaaacattttgttacactaaggggcaatatgtgacatattgttgcaatttgtaataaaatttagaaaatcgtcttctctataatatccctacatattatggcaaattacaaatgtatctgtttaatactgatacgtattgttaatgcaactgccttgaaatgggggtggcatggggagggtTGAAGATCTGTTT-A------ACTTGCATCGGA--TG---CAAAATAATGCCGGT-AAGCGTTGACAGCGATTTTCTATT-T-T-T-ATCAA-CAATGGCATTAACCTTAACCTT-AAATCGTGACGTACGGA-------------A-----G-AAGGGGCGGACACTCGGAT--------AGA------------CG---------AACAGTAC-G--ACGGACGGAC----TTAGGTAGCATTATA------CC----C-----------------C-CA--AC--C--CCA-C---CC----AGCCCT-----TCTC---AAG----C-----T-------------TGCATAA------ACAAT-ACGTA-TCAGTATTA---AACAGATAAGTTGTATAAACT-GTG----TA-AT-TTGCCAT--AATATGTa
gi|7 : -----------------T-TA--AA--C--AGA-T---AA----G----T-----TGTA---TAA----A-----C-------------TGTGTAATTTGCCATAAT-ATGTA-G-----------AAAAGGTGA-TTACCTAAGTT-TTGT---TATATATTGCAAC--AATATGTCT--CAT-AT-CGCACCTTAATGTAACAC-AA-----T--A----TTT-------TTTTTACATTAAG------G------G-T--------T-----TAATGCTTagaaaaggtgattacctaagttttgttatatattgcaacaatatgtctcatatcgcaccttaatgtaacacaatattttttttacattaagggtttaatgctttcactggaaatagttattgatactgtt
gi|8 : tgaagatctgtttaacttgcatcggatgcaaaataatgccggtaagcgttgacagcgattttctatttttatcaacaatggcattaaccttaaccttaaatcgtgacgtacggaagaaggggcggacactcggatagacgaacagtacgacggacggacttaggtagcattatacccccaaccccacccagcccttctcaagcttgcataaacaatacgtatcagtaTAACGGTT--AT--T-T--------------ATAACCACAACCC-TTAGTGTAAC-AA-AAA-T-------A----A--G---TTT------------------------AAGA-------------AAA----TCT-TATTGTGATG-A----TAA-AT---A--------T-------AT-T---TT--TGTCACACTAAGGGT-TG--ACGA-ATATGA---ATTGTA--TAGTCATTCATTAATAATTTGTTAACAA-----CAGA--CCTAATGTTTACA---TACTTGTTGGCCCTTATAC-TTAA--------------------TGAAAGTTAATATGGTATAAATAATACAA-CCAACACGAAATGTAACACACACACCATATAAACATATTCCTA------TATTTAATCTAAGCAATTGTACAGTACAATTTCTTGATTTCATCAGAGATATAAAATACTATTATCTGTC-------TCATACATGTTCCTACCTAGTATATGAACAAAAGAACAGTTC-AACGTGTTACCTGTTCCCTTTTTAGCTtcactggaaatagttattgatactgtt
gi|9 : G---------GACAGTAC-G--ACGGACGGACGGAGATGGGTAGCACTATATCCCATCC----CATTTTAAGACGGTGGTTT-AA--ACAAC--ACG-T---AACAACA----T-----TAAA---CAA----A-----TAAATTGTATAAATTGTGTAATTTGCTATAAT-ATATA-GAGATATCATAGAGAAGTTGA-GTTCTGAAATT-TTGT---TACATATTGCCACTTAGTTTAACA---AA-ATATG----TT--TTTAACAA-AA-----T--A----TGT-------TTGTTAAACTAAG------G------G-TTGCA---GTTA---TAACCCCTAGTGT
gi|9 : ATATGTTTGTTAAACTAAGGGTTGCAG--T-T--------------AT------AACCC-CTAGTGTTAC-AA-------------------------------------------------------A-------TA--TTGA-----TTT-TGTAG-GGTA-A----CAA------A--------T-------AT-TGAGTT--TGTTACACTAAGGGA-TG--tacaaatattgattttgtagggtaacaaatattgagtttgttacactaagggatgttgttacattaaagccacaaagcatttacacacttgatatagtata
gi|9 : ggacagtacgacggacggacggagatgggtagcactatatcccatcccattttaagacggtggtttaaacaacacgtaacaacattaaacaaataaattgtataaattgtgtaatttgctataatatatagagatatcatagagaagttgagttctgaaattttgttacatattgccacttagtttaacaaaatatgtttttaacaaaATGTAA--CAACAT----CCCTTAGTGTAACAA-AC-----TCAA----TAT-------TTGTTACCCTAttgttacattaaagccacaaagcatttacacacttgatatagtata
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|17 ): AAAATGCTATGGTTAAAAAAAGCGGATTTTATAAAAATGATTTTTTGTCGGATTATCATGCGCGATAATAGCTATGTATGATTTGAGG
Unaligned ( gi|19 ): ACTAAAACGATCAATAGTAAAATTCATCAGATTGTTAAACAAGTATTAATGAAACA
Alignments
lowQualScore : 11111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 44444444444444444444444444444 11111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 111 1 22222 11 111111 11 222 4444444444444444444 1 1 1 1 222222 3333333 11 1 222222 222 33 1 11 11 111111 11111 66666666666666666666666666666666666 11111111 22222222222222222222222 3333333333333333333333333333333333333333333333333333333333333 11111111111111111 111111111 2222222222222 444444444444444444444444
lowQualScore : 1 99999999999999999999999999999 2 2 2 2 22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222 33 3 111 1 55555 33 2 1 3 7 555555 88 333 6 0 7 7 3333333333333333333 1 1 5 5 5 5 1 1 999999 1 1 2222222 66 1 5 1 888888 1 1 111 1 1 1 00 1 1 1 1 1 1 1 1 1 2 77 8 1 11 8 6 666666 66 9999 5 5 5 77777 2 6 88888888888888888888888888888888888 88888888 77777777777777777777777 4 66 9999 7777 66 9999999999999999999999999999999999999999999999999999999999999 66666666666666666 0 444444444 8 11 3 888 4 1 0 3 3 333 1 8 9 8 1 55 4 55 5 444 0000000000000 44 3 666666666666666666666666
lowQualScore : . ............................. . . . . .......................................................................................................................... .. . ... . ..... .. . . . . ...... .. ... . . . . ................... . . . . . . . . ...... . . ....... .. . . . ...... . . ... . . . .. . . . . . . . . . . .. . . .. . . ...... .. .... . . . ..... . . ................................... ........ ....................... . .. .... .... .. ............................................................. ................. . ......... . .. . ... . . . . . ... . . . . . .. . .. . ... ............. .. . ........................
lowQualScore : 0 77777777777777777777777777777 5 7 7 7 33333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333 99 3 444 4 22222 88 5 2 2 3 333333 33 333 7 7 3 3 3333333333333333333 0 0 5 0 0 0 0 0 000000 0 0 5555555 55 0 5 0 555555 0 0 000 0 0 0 55 0 0 0 0 0 0 0 0 0 8 00 0 0 00 0 7 444444 99 8888 0 0 0 44444 1 2 22222222222222222222222222222222222 11111111 22222222222222222222222 4 11 4444 2222 99 7777777777777777777777777777777777777777777777777777777777777 55555555555555555 2 555555555 8 11 6 555 7 4 2 5 6 222 9 8 6 8 0 00 0 55 1 555 6666666666666 44 1 111111111111111111111111
consensus : GAAAATCGTATTCCAGNGATAAGTATATTTTTGTTACACTAAGGGTT--AT--T-T--------------ATA-CCGCAACCC-TTAGTGTAACA-A-A-A---------------T-------A----A--G---T---------------A----ACACC---GTAAC----CCTTAG--TGTAACGA----TAA-ATA--------T-AT------T---TT--TGTTACACTAAGGGT-TG--ACGA-ATACGA---ATTGTA--TAGTCATTCATTAGTAATTTATTAACAAAATCACAGA--CCAAACGTTTACA---TACTCGTTGGACCTTATACATTAAAGATGTAAGAA--TGTA--TTGAAAGTTAATNTGGCATAAATNATACAAGCCAACACGAAATGTAACACGCACACCNTATAANCATATTCCTAGTCCTATATTTNATCTAAGCAATTGTACAGTACAANTTCTTGATTTCACCAGAGATATAAAATACTATTATCTGTCTCTCATTTCATACATGTTCCTACCTAGTATATGANCGAAAGNACAGTTCAAANGTGTTACCTGTTCCCTTTNTAGCTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGAGAGAGAAAAATATCGAAACGACATGAATGCCCCCCNCCCCACACATCTTNCNATTNTTCGCAAACTCTGTCCGAGGTATNTTGNTTCTGAACACNTGCATGAAGTTTCATCAAAATTGNATTAAAANAAGGNCGGTCGAGCGGTNGCNGTGNTTTTCTGCTTTTAGTAACGATGACGTTGACCTTGACCCGAAAA-TCGTGAAACGCAAACGCATCCGAAGTATCTCTG-TTCTGAACATCTGTGT-A------ACTTGCATCGGA--TG---NAAAATAATGCCGGT-AAGCGTTGACAGCGATTTTCTA-TT-T-T-A-GTAACAGTGACATTGACCTTGACCTGAAAATCGTGACGTACGGA-------------A-----G-A-------------CGGAC--------GGA------------CG---------GACGGTAC-G--ACGGACGGAC----ATGGGTAGCACTATATC--CC--C----C------------------T-CA--AC--C--ACA-T---AA----A----T-----TGTA----TAA----A-----TTGCGT---------AATTTGCCATAAT-ATGTA-GGGATATTATAGAGAAGATGA-TTNCCTAAATTTTGTTACATATTGCAAC--AATATGTC-A--CATATCGC--CCCTTAGTGTAACAAAA-----T--A----T-TTTTGTTACAC-TAAG------GG-T-------GT-----CAACCCTTAGTGTA
Reference ( family-3843 ) : GAAAATCGTATTCCAGNGATAAGTATATTTTTGTTACACTAAGGGTT--AT--T-T--------------ATAACCGCAACCC-TTAGTGTAACA-A-A-A---------------T-------A----A--G---T---------------A----ACACA---GTAAG----TCTTGN--TGTGNCGA----TAA-GTA--------T-AT------T---TT--TGTTACACTAAGGGT-TG--ACGA-ATACGA---ATTGTA--TAGTCATTCATTAGTAATTTATTAACAAAATCACAGA--CCAAACGTTTACA---TACTCGTTGGACCTTATACATTAAAGATGTAAGAA--TGTA--TTGAAAGTTAATNTGGCATAAATNATACAAGCCAACACGAAATGTAACACGCACACCNTATAANCATATTCCTAGTCCTATATTTNATCTAAGCAATTGTACAGTACAANTTCTTGATTTCACCAGAGATATAAAATACTATTATCTGTCTCTCATTTCATACATGTTCCTACCTAGTATATGANCGAAAGNACAGTTCAAANGTGTTACCTGTTCCCTTTNTAGCTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGAGAGAGAAAAATATCGAAACGACATGAATGCCCCCCNCCCCACACATCTTNCNATTNTTCGCAAACTCTGTCCGAGGTATNTTGNTTCTGAACACNTGCATGAAGTTTCATCAAAATTGNATTAAAANAAGGNCGGTCGAGCGGTNGCNGTGNTTTTCTGCTTTTAGTAACGATGACGTTGACCTTGACCCGAAAA-TCGTGAAACGCAAACGCATCCGAAGTATCTCTG-TTCTGAACATCTGTGT-A------ACTTGCATCGGA--TG---NAAAATAATGCCGGT-AAGCGTTGACAGCGATTTTCTA-TT-T-T-A-GTAACAGTGACATTGACCTTGACCTGAAAATCGTGACGTACGGA-------------A-----G-A-------------CGGAC--------GGA------------CG---------GACGGTAC-G--ACGGACGGAC----ATGGGTAGCACTATATC--CC--C----C------------------T-CA--AC--C--ACA-T---AA----A----T-----TGTA----TAA----A-----TTGCGT---------AATTTGCCATAAT-ATGTA-GGGATATTATAGAGAAGATGA-TTNCCTAAATTTTGTTACATATTGCNAC--AATATGTC-A--CATATCGC--CCCTTAGTGTAACAAAA-----T--A----T-TTTTGTTACAC-TAAG------GG-T-------GT-----CAACCCTTAGTGTA
gi|1 : GAGAATCTTATTCCAGGGATAGGTATATCTTTGTTACACTAAGGGTT--AT--T-T--------------ATAACTGCAACCC-TTAGTGTAACA-A-A-A---------------T-------A----A--G---T---------------A----ACACA---ATAAG----TTTTGA--TAAGACGA----TAA-GTA--------T-AT------T---TT--TGTTACACTAAGGGT-AG--ACGA-ATATGA---ATTGTA--TAGTCATTCATTAGTAATTTATTTACAAAATTACAGA--CCAAACGTTTACA---TACTTGTTGGACCTTATGTATTAAAAATGTAAAAA--TGTA--TTAAAAATTAATTTGACATAAATTAT-CAAGCCAACACAAAAT-TAA-ATGTACACTTTATAATCATATTCCTAGTCCTATATTTTATCTAAGCAATTGTACAGTACAAGTTCTTGATTTCACCAGAGATATAAAATACTATTATCTGTCTCTCATTTCATACATGTTCCTACCTAGTATATG-TCGAAAATACAGTTCAAAAGTGTTACTT------TTTGTAGCT
gi|1 : AAAGAGAGAAAAATATCAAAACGACATGAATGTCCCCCACCCCACACATCTTACAATTGTTCGCAAACT-TGTCCGAGGTATCTTGGTTCTGAACACCTACATGAAGTTTCATCAAAATTGGATTAAAAGAAGGGCAGTCAAGCGGTAGCGGTGATTTTCTGCTTTTAGTAATGATGACATTGACCTTGACCCGAAAAATCGTGAAATGCAAACGCATCCGAATTATCTCTG-TTCTGAACATCTGTGT-ATTTGTTACTTGCATCTGA--TG---GGAAATAATGCCGGT-AATTGTTGACAGCAATTTTCTA-TT-T-T-ATGTAACAGTGACATTGACCTTGACCTGAAAATCGTGATTTACGAA-------------A-----A-A-------------CAGAA--------GGA------------CA---------GACGGCAC-G--ACAGACGGAC----ATGGGTAGCACTATATC--TC--C----C------------------T-CA--AC--C--ATA-T---AA----A----T-----TGTA----TAA----A-----TTGTGA---------AATTTGCCATAATAATGCA-GGGATATTATAGAGAAGATGA-TTAACTAAATTTTGTTGCATATTGCAAC--AATATGTC-A--CAAATAGC--CCTTTAGTGAAACAAAA-----C--A----T-TTTTGTTACAC-TAAG------GG-T-------GT-----CAACCCTTAGTGTAacaatttagtaatacctcatgattcatgactaatccctttccaaaataaccaaaacattcactgaaataatgttttgtttgtaagacttcttacttttctttttataattatcatttttccaatcttccacagcatatttacagtcacatttgttagttaaaatatacacgaaaaaaagagagaaaaatatcaaaacgacatgaatgtcccccaccccacacatcttacaattgttcgcaaacttgtccgaggtatcttggttctgaacacctacatgaagtttcatcaaaattggattaaaagaagggcagtcaagcggtagcggtgattttctgcttttagtaatgatgacattgaccttgacccgaaaaatcgtgaaatgcaaacgcatccgaattatctctgttctgaacatctgtgtatttgttacttgcatctgatgggaaataatgccggtaattgttgacagcaattttctattttatgtaacagtgacattgaccttgacctgaaaatcgtgatttacgaaaaacagaaggacagacggcacgacagacggacatgggtagcactatatctccctcaaccatataaattgtataaattgtgaaatttgccataataatgcagggatattatagagaagatgattaactaaattttgttgcatattgcaacaatatgtcacaaatagccctttagtgaaacaaaacatttttgttacactaagggtgtcaacccttagtgtaccca
gi|10 : gagaatcttattccagggataggtatatctttgttacactaagggttatttataactgcaacccttagtgtaacaaaataagtaacacaataagttttgataagacgataagtatatttttgttacactaagggtagacgaatatgaattgtatagtcattcattagtaatttatttacaaaattacagaccaaacgtttacatacttgttggaccttatgtattaaaaatgtaaaaatgtattaaaaattaatttgacataaattatcaagccaacacaaaattaaatgtacactttataatcatattcctagtcctatattttatctaagcaattgtacagtacaagttcttgatttcaccagagatataaaatactattatctgtctctcatttcatacatgttcctacctagtatatgtcgaaaatacagttcaaaagtgttactttttgtagctacaatttagtaatacctcatgattcatgactaatccctttccaaaataaccaaaacattcactgaaataatgttttgtttgtaagacttcttacttttctttttataattatcatttttccaatcttccacagcatatttacagtcacatttgttagttaaaatatacacgaaaaACGC-TTAGTGTAACA-ACA-A---------------TTGTTTCTA----A--GGGTT---------------G----ACACC---GTAA-----CCTTAG--TGTATCAA-----AA---A--------T-GT------T---TT--TGTTATACTAAGGGT-TGCCACAA-Accca
gi|10 : tattgtatttatattcgtcataccattgtttatagaatgttatggttataaaaaagcggattttatgccggattatcatgatcaataatagctatgtatgc--CCCTTAGTATAACAAAAA----C--A----T-TTTTGATACAC-TAAGGTTAC-GG-T-------GT-----CAACCCTTAGatgttttgttcatgtattgacatttgattataaaaagggttcatttagtgtaacatttcttttagaaatttaattatccctgctatatgtacgaaattggagcatatagtttt
gi|11 : tattgtatttatattcgtcataccattgtttatagaatgttatggttataaaaaagcggattttatgccggattatcatgatcaataatagctatgtatgctttgtggcaaGAAAATCGTGTTTCGGCGACAAGTATATGTTTGTTTTACTAAGGGTT--AT--T-T--------------ATAACCGCAAACA-TTAGTGTAAGG-A-A-A---------------T-------A----A--G---T---------------aaacaattgttgttacactaagcgtatgttttgttcatgtattgacatttgattataaaaagggttcatttagtgtaacatttcttttagaaatttaattatccctgctatatgtacgaaattggagcatatagtttt
gi|12 : tnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaaattacacaaattaaagcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaGAAAATCGTATTCCAAAGATAAGTATATTTTCGTTACACTAAGGGTT--GT--T-T--------------ACAACTGCAACCC-TT
gi|13 : nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaTTGTTACACTAAGAGTT--AC--G-T-------------------TGCGGTCC-TAAGTGTAACA-A-A-ACCCATTTTGTTACACT-------A----A--G---G---------------A----TCGCAACCGTAAC----CCTAAG--TGTAACGA-----AA-AAA--------C-CTAAGGGGT---TT--TGTTTCACTAAGAGT-T
gi|13 : ggt--CTCTTAGTGAAACAAAACCCCTT--AGGTTT-TTTCGTTACAC-TTAG------GG-TTACG---GTTG---CGATCCTTAGTGTAcacttgttacactaagcgtatgtttggcacatgtatagacatttgataataaaacgggttctctaagtaaaaccttttttaactagaaatttatttatccctgctatgaaatg
gi|13 : ggtaaTTTTCGTTACACTTAGGGTT--ACGGT-T--------------------GCGATCC-TTAGTGTAACA-A-A-A---------------T-------G----G--G---TTTTGTTACACTTAGGA----CCGCAAC-GTAAC----TCTTAG--TGTAACAA----CA---------------------------CT--TGTTACACTAAGCGTATG--TTTG-GCACA------TGTA--TAGACATTTGATAATAAacaaaatgggttttgttacacttaggaccgcaacgtaactcttagtgtaacaacacttgttacactaagcgtatgtttggcacatgtatagacatttgataataaaacgggttctctaagtaaaaccttttttaactagaaatttatttatccctgctatgaaatg
gi|14 : ggtaactcttagtgaaacaaaaccccttaggttCATTGACCTTGACTTGAAAA-TCGTGAAACGCCTCCGCATCTGTAGTATC-------------ATCTGTGT-A------ACTTGCATCGGA--CG---GAAAATAATGCCGGT-AAGCATTGACAGCGATTTTCTA-TT-T-TAA-GTATCAGTGATATTGACCTTGACCTGCAAATCGTAACGTACGGA-------------AAAATGG-A-------------CAGACAAACGTATGGG------------CG---------AACGGTAC-G--ACAGACGGAC----AGGTGTAGCACTATATT--TC--C----C------------------aacgggttctctaagtaaaaccttttttaactagaaatttatttatccctgctatgaaatg
gi|15 : TTACATTAAGG-----AT--T-G--------------ACA-CCGCAACCT-TCAGTGTAACA-A-A-cat
gi|15 : ATGTATC-AAACATAT-GC-----TTAGTGTAACAA----------------------TTACAT-TAAG------GA-TTGACACCG------CAACCTTCAGTGTAttgttacactaagcatatgtttgatacatgtattgacatttgattatacaacagattcagttagggttataatgtttgttcaactagaaatttatcctgctatggaatggggacatatggtgt
gi|16 : tttgt------GA-T-------GT-----CAACCCTTAGTGTAgtattgacatttgattatacaacagattcagttagggttataatgtttgttcaactagaaatttatcctgctatggaatggggacatatggtgt
gi|16 : atgcATGTCAA--CCCTTAGTGTAACA-------------------TTTGTTACAacatttgttacatgtattggcatttgattataaaacaggttcatttagtgtaacaattttttttttttaaacttagaaatttatttatccct
gi|16 : atgcg--TGTTACACTAAGGGT-TG--ACtgtattggcatttgattataaaacaggttcatttagtgtaacaattttttttttttaaacttagaaatttatttatccct
gi|18 : atgcgatGAAATTCTTATTCCAGGGAAAGGAATATTTT-GTTACACCAAGGGTT--AT--T-T--------------AT-ACCGCAAtttgttacatgtattggcatttgattataaaacaggttcatttagtgtaacaattttttttttttaaacttagaaatttatttatccct
gi|2 : aGAACATCGTACTTCTTTGATAAATATATTTTTGTTACACTAAGGATT--AT--T-TNNNNNNNNNNNNNNNNNNNNNNNNNNN-NNNNNNNNNNN-N-N-N---------------N-------N----N--N---N---------------N----NNNNN---NNAAGACAATCTTAT--TTCTTTGA----TAA-ATA--------T-AG------T---TT--TGTTACACTAAGGGT-T
gi|20 : tagagtaatgctatattagtaatagcatcatcttgagttataattgtcagaaaaggaatacttatgttgcatggggaaggggggtcgagattcagggagaaaagggtcaataacaagttcatcaaaattagaataatgcataaatactttcatttgtcactcattaatagttgtatcctgtttctcagatgttcaactcttgaaagtgacatagcgcgctctagttttattttggttttaaaactgcttcattttgtcaccatcgttataaaagcattcatctaaaagtaggctgacatcgcaatatatcataaaatgtgttttatcttggacatttgtagttatggaacattactaatacaattatcttagtgaaaataaataacattaacgaagagtaagtagactcatatcatctcaaactcttgtttaaaaaacgtaaataaacaaacttatataaaattacgaatctcctttaaatcttcggttttccacttcattattttaagttatttaccagtgttaagaaaaccgtccaacaaagtttttctaagggttgtttnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaaCGGC-------------A-----G-A-------------CAGAC--------GGA------------CG---------GACGA-ACGG--ACGGACGGAC----AGTGATAACATTGTa
gi|3 : GTAA--ATGACGTTGACCTTGACCCGAAAA-TCGTGAAACACAAACGCATCTGAAGTCTCACTG-TTCTGAACATCTGTGT-A------TCTTACATTGGA--GG---GGAAATAATACTGGT-AAGCGTTGACAGCGATT---TA-TC-T-T--------AGTGACATTGACCTTAACCTGAAAATCGTGATGTACGGA-------------A-----GAA-------------CGGAC--------GGACAGACGGATAGGCG---------AACGGTAC-G--ACGGACGGAC----ATGGGTAGCACTATA-C--TC--C----C------------------T-CACCAC--C--ACACC---CA----A----T-----GGCAATT-TCA----AGGCTGTTGCAT---------AA------ACAAT-ATGTA-TCAGTATTAAACATATAA--A-TTGTATAAATTGTG-TA-AT-TTGCCAT--AATATGTtcat
gi|3 : atttattgccgcaacc------------------T-TA--AA--C--ATA-T---AA----A----T-----TGTA----TAA----A-----TTGTGT---------AATTTGCCATAAT-ATGTA-GGGATGTTATAGAGAAGATGA-TTACCTAAATTTTGTTACATATTGCAAC--AATATGTC-A--CATATGGA--CCCTTAGTGTAACAAAA-----T--A----T------TTACAC-TAAGGGTTGCGG-T-------GT-----CAACCCCTGGTGTAagggatgttatagagaagatgattacctaaattttgttacatattgcaacaatatgtcacatatggacccttagtgtaacaaaatatttacactaagggttgcggtgtcaacccctggtgtaacagaaactgattgacaccgcaacccttagtgtaacagttgttacaattgttactgtttcactaagggttgcaacagacgtggcaaccagtacttacaagaatttaaacaatcatatattctaaacgtagacaatgtatcgtgaatgctatacagtatagatataagaacttgtaacttgtaagtcgaaataaacttctgtattt
gi|3 : atttattgccgcaaccgtaaatgacgttgaccttgacccgaaaatcgtgaaacacaaacgcatctgaagtctcactgttctgaacatctgtgtatcttacattggaggggaaataatactggtaagcgttgacagcgatttatcttagtgacattgaccttaacctgaaaatcgtgatgtacggaagaacggacggacagacggataggcgaacggtacgacggacggacatgggtagcactatactccctcaccaccacacccaatggcaatttcaaggctgttgcataaacaatatgtatcagtaTGTTACACTAAGGGTT--GC--GGT--------------GT-----CAATCAGTTTCTGTTACA-C-C-A---------------G-------G----G--G---TT--------------G----ACACC---GCAAC----CCTTAG--TGT----------AA-ATA--------T-------------TT--TGTTACACTAAGGGT-acagaaactgattgacaccgcaacccttagtgtaacagttgttacaattgttactgtttcactaagggttgcaacagacgtggcaaccagtacttacaagaatttaaacaatcatatattctaaacgtagacaatgtatcgtgaatgctatacagtatagatataagaacttgtaacttgtaagtcgaaataaacttctgtattt
gi|3 : atttattgccgcaaccgtaaatgacgttgaccttgacccgaaaatcgtgaaacacaaacgcatctgaagtctcactgttctgaacatctgtgtatcttacattggaggggaaataatactggtaagcgttgacagcgatttatcttagtgacattgaccttaacctgaaaatcgtgatgtacggaagaacggacggacagacggataggcgaacggtacgacggacggacatgggtagcactatactccctcaccaccacacccaatggcaatttcaaggctgttgcataaacaatatgtatcagtattaaacatataaattgtataaattgtgtaatttgccataatatgtagggatgttatagagaagatgattacctaaattttgttacatattgcaacaatatgtcacatatggTTACACTAAGGGTT--GCG-G-T--------------GT-----CAACCC-CTGGTGTAACA-G-A-AAC-------------T-------G----A--T---T---------------G----ACACC---GCAAC----CCTTAG--TGTAACAG----TTG-TTA--------CAAT------TG--TTACTGTTTCACTAAGGGT-TG---CAACAGACG-----TGGCAACCAGT-ACTTACAAG-AATTTA--AAC--AATCATATATTCTAAACGTAGACAATGTA-TCG-TGAATGCTATACAGTATAGATATAAGAACTTGTAACTTGTAAGTgttgttacaattgttactgtttcactaagggttgcaacagacgtggcaaccagtacttacaagaatttaaacaatcatatattctaaacgtagacaatgtatcgtgaatgctatacagtatagatataagaacttgtaacttgtaagtcgaaataaacttctgtattt
gi|4 : atttattgccgcaaccgtaaatgacgttgaccttgacccgaaaatcgtgaaacacaaacgcatctgaagtctcactgttctgaacatctgtgtatcttacattggaggggaaataatactggtaagcgttgacagcgatttatcttagtgacattgaccttaacctgaaaatcgtgatgtacggaagaacggacggacagacggataggcgaacggtacgacggacggacatgggtagcactatactccctcaccaccacacccaatggcaatttcaaggctgttgcataaacaatatgtatcagtattaaacatataaattgtataaattgtgtaatttgccataatatgtagggatgttatagagaagatgattacctaaattttgttacatattgcaacaatatgtcacatatggacccttagtgtaacaaaatatAGAAAGAGAAAAATATCGAAACGACATGAATACCCCCTCCCTC---TATCTTTCTATTTTTTGCAAAcgaaataaacttctgtattt
gi|4 : TTTCTATTTTTTGCAAAGGTGAT------CTTGACTCAAGAA-TCCATAAGCGCAAACTCGTCCGAAGTATAT-TGTTTCTGAACACGTGTATGA------AGTTTCATCAAAATTGTATTAAAATAAGGTCGGTCGAGCGGTTACTGTGCTTTTCTG-CTAT-A-A-GTAACGATGAC--TGACTTTGACCAGAAAGTCGTGAggtgatcttgactcaagaatccataagcgcaaactcgtccgaagtatattgtttctgaacacgtgtatgaagtttcatcaaaattgtattaaaataaggtcggtcgagcggttactgtgcttttctgctataagtaacgatgactgactttgaccagaaagtcgtgaaacgctaacgtattcaaagtatctctgttctgaacatctgtaacttgcatgggatggaaaataatgccggtaaacgttgaaatcgattttctattttgagtaactgtgacgttgaccttgacctgaaaatcgttacgtacggaaggacggatggacgatacgcaaaagacggacatgggtagcactatatcccattcaccaccttaccccaacccccatgtcaagccggttgcataaataatacgtatcggtattaaacagatgaattgtataaattgtgtaatttgtcataatatgtagagataatatagagaagatgatttccttgattttgttacatatttcaacaatatgtcacatatcgcccttaagtgtaacaaaatatttttgttacactaacagttgcggtgacaagggagactttgttagtaaacgttttattaaatg
gi|4 : agaaagagaaaaatatcgaaacgacatgaataccccctccctctatcCGCAAACTC-GTCCGAAGTATATTGTTTCTGAACACGTGTATGAAGTTTCATCAAAATTGTATTAAAATAAGGTCGGTCGAGCGGTTACTGTGCTTTTCTGCTATAAGTAACGATGAC--TGACTTTGACCAGAAAG-TCGTGAAACGCTAACGTATTCAAAGTATCTCTG-TTCTGAACATC--TGT-A------ACTTGCATGGGA--TG---GAAAATAATGCCGGT-AAACGTTGAAATCGATTTTCTA-TT-T-TGA-GTAACTGTGACGTTGACCTTGACCTGAAAATCGTTACGTACGGA-------------A----------------------GGAC--------GGA------------TG---------GACGATAC-GCAAAAGACGGAC----ATGGGTAGCACTATATC--CC--A----T------------------T-CACCAC--CTTACC-C---CA----A----CCCCCATGT-----CAAGCCGG-----TTGCAT---------AA------ATAAT-ACGTA-TCGGTATTAAACAGATGA--A-TTGTATAAATTGTG-TA-AT-TTGTCAT--AATATGTaacgctaacgtattcaaagtatctctgttctgaacatctgtaacttgcatgggatggaaaataatgccggtaaacgttgaaatcgattttctattttgagtaactgtgacgttgaccttgacctgaaaatcgttacgtacggaaggacggatggacgatacgcaaaagacggacatgggtagcactatatcccattcaccaccttaccccaacccccatgtcaagccggttgcataaataatacgtatcggtattaaacagatgaattgtataaattgtgtaatttgtcataatatgtagagataatatagagaagatgatttccttgattttgttacatatttcaacaatatgtcacatatcgcccttaagtgtaacaaaatatttttgttacactaacagttgcggtgacaagggagactttgttagtaaacgttttattaaatg
gi|4 : agaaagagaaaaatatcgaaacgacatgaataccccctccctctatctttctattttttgcaaaggtgatcttgactcaagaatccataag------------------T-TA--AA--C--AGA-T---GA----A----T-----TGTA----TAA----A-----TTGTGT---------AATTTGTCATAAT-ATGTA-GAGATAATATAGAGAAGATGA-TTTCCTTGATTTTGTTACATATTTCAAC--AATATGTC-A--CATATCGC--CCTTAAGTGTAACAAAA-----T--A----T-TTTTGTTACAC-TAAagagataatatagagaagatgatttccttgattttgttacatatttcaacaatatgtcacatatcgcccttaagtgtaacaaaatatttttgttacactaacagttgcggtgacaagggagactttgttagtaaacgttttattaaatg
gi|4 : agaaagagaaaaatatcgaaacgacatgaataccccctccctctatctttctattttttgcaaaggtgatcttgactcaagaatccataagcgcaaactcgtccgaagtatattgtttctgaacacgtgtatgaagtttcatcaaaattgtattaaaataaggtcggtcgagcggttactgtgcttttctgctataagtaacgatgactgactttgaccagaaagtcgtgaaacgctaacgtattcaaagtatctctgttctgaacatctgtaacttgcatgggatggaaaataatgccggtaaacgttgaaatcgattttctattttgagtaactgtgacgttgaccttgacctgaaaatcgttacgtacggaaggacggatggacgatacgcaaaagacggacatgggtagcactatatcccattcaccaccttaccccaacccccatgtcaagccggttgcataaataatacgtatcggtaTGTC-A--C----CGCAACTGTTAGTGTAACAAAA--------A----TATTTTGTTACACTTAAG------GG-C-------Gcagttgcggtgacaagggagactttgttagtaaacgttttattaaatg
gi|5 : agaaagagaaaaatatcgaaacgacatgaataccccctccctctatctttctattttttgcaaaggtgatcttgactcaagaatccataagcgcaaactcgtccgaagtatattgtttctgaacacgtgtatgaagtttcatcaaaattgtattaaaataaggtcggtcgagcggttactgtgcttttctgctataagtaacgatgactgactttgaccagaaagtcgtgaaacgctaacgtattcaaagtatctctgttctgaacatctgtaacttgcatgggatggaaaataatgccggtaaacgttgaaatcgattttctattttgagtaactgtgacgttgaccttgacctgaaaatcgttacgtacggaaggacggatggacgatacgcaaaagacggacatgggtagcactatatcccattcaccaccttaccccaacccccatgtcaagccggttgcataaataatacgtatcggtattaaacagatgaattgtataaattgtgtaatttgtcataatatgtagagataatatagagaagatgatttccttgattttgttacatatttcaacaatatgtcacatat------ATTTGCATCGGA--TG---CAAAGTAATACCCGT-AAGCGTTGACACCGATTTTCTA-----------------TGACATTGACCTTGTCCT-AAAATCGTGACGTACAGA-------------A-----G-AACGGG--------CGGAC--------AGA------------CGGATAGGCAAGACGGTAT-G--ACGGACGGAC----ATGGGTAGCAATATATC--CT--CACCAC------------------TGCA--AC--C---CA-TTTCAA----AGCGGT-----TGCA----C-G----G-----TTGCGT---------AA------ACAAT-ATATATCAGA-ATTAAACAGA------------TAAATTGTG-TA-AT-TTGCCAT--ACTATGTagggagactttgttagtaaacgttttattaaatg
gi|5 : A----TAA----A-----TTGTGT---------AATTTGCCATACT-ATGTA-GGGATATTATAGAAAAGATAA-TTTCCTAAATTGTGTTACATATTGCAAC--AATATGTC-G--CATATCGC--CCCTTGGTGTAACAAAA-----T--A----T-TTTTGTTACAC-TTAG------GG-T-------agggatattatagaaaagataatttcctaaattgtgttacatattgcaacaatatgtcgcatatcgccccttggtgtaacaaaatatttttgttacacttagggttgcggtgtaacataaactaattgtgttacactaagggttgcggtgtaacataaactaattttgttacactaagggttgcggaatcaacccttagtgtaacaattgtt
gi|5 : atttgcatcggatgcaaagtaatacccgtaagcgttgacaccgattttctatgacattgaccttgtcctaaaatcgtgacgtacagaagaacgggcggacagacggataggcaagacggtatgacggacggacatgggtagcaatatatcctcaccactgcaacccatttcaaagcggttgcacggttgcgtaaacaatatatatcagaattaaacagTT--ATG-T-T--------------ACA-CCGCAACCC-TTAGTGTAACA-C-A-A---------------T-------T----A--G---TTT-------------ATGTTACACC---GCAAC----CCTAAG--TGTAACAA-----AA-ATA--------T-------------TT--TGTTACACCAAGG----G--GCGATATGCGACATATTGTtgcggtgtaacataaactaattgtgttacactaagggttgcggtgtaacataaactaattttgttacactaagggttgcggaatcaacccttagtgtaacaattgtt
gi|5 : atttgcatcggatgcaaagtaatacccgtaagcgttgacaccgattttctatgacattgaccttgtcctaaaatcgtgacgtacagaagaacgggcggacagacggataggcaagacggtatgacggacggacatgggtagcaatatatcctcaccactgcaacccatttcaaagcggttgcacggttgcgtaaacaatatatatcagaattaaacagataaattgtgtaatttgccatactatgtagggatattatagaaaagataatttcctaaattgtgttacatattgcaATATTTTTGTTACACTTAGGGTT--G-------------------------CG----------GTGTAACATA-A-AC--------------T-------A----ATTG---T---------------G----TTACA---CTAAG----GGTTGCGGTGTAAC-A----TAA-AC---------T-AA------T---TT--TGTTACACTAAGGGT-TG--CGGA-ATactaattttgttacactaagggttgcggaatcaacccttagtgtaacaattgtt
gi|5 : atttgcatcggatgcaaagtaatacccgtaagcgttgacaccgattttctatgacattgaccttgtcctaaaatcgtgacgtacagaagaacgggcggacagacggataggcaagacggtatgacggacggacatgggtagcaatatatcctcaccactgcaacccatttcaaagcggttgcacggttgcgtaaacaatatatatcagaattaaacagataaattgtgtaatttgccatactatgtagggatattatagaaaagataatttcctaaattgtgttacatattgcaacaatatgtcgcatatcgccccttggtgtaacaaaTTGTTACACTAAGGGTTG-AT--T--------------------CCGCAACCC-TTAGTGTAACA-A-A-A---------------T-------T----A--GTT-T---------------ATGTTACACC---GCAAC----CCTTAG--TGTAAC-A----CAA-TTA----------GT------T---TA--TGTTACACcaacccttagtgtaacaattgtt
gi|6 : atttgcatcggatgcaaagtaatacccgtaagcgttgacaccgattttctatgacattgaccttgtcctaaaatcgtgacgtacagaagaacgggcggacagacggataggcaagacggtatgacggacggacatgggtagcaatatatcctcaccactgcaacccatttcaaagcggttgcacggttgcgtaaacaatatatatcagaattaaacagataaattgtgtaatttgccatactatgtagggatattatagaaaagataatttcctaaattgtgttacatattgcaacaatatgtcgcatatcgccccttggtgtaacaaaatatttttgttacacttagggttgcg--CTCTTAGTGTAACACAA-----TCAG----T-TTTTGTTACAT-TAAG------GGTT-------GTCATCGCAATCCTTAGTGTttgtt
gi|6 : CCC-TTAGTGTAACA-A-A-A---------------T-------GTTTTT--G---T---------------A----ACAC-----TAAG----GATTGC--GATGACAACCCTTAATGTAACAAAAACT-GA------T---TG--TGTTACACTAAGAGtacaaaaacattttgttacactaaggggcaatatgtgacatattgttgcaatttgtaataaaatttagaaaatcgtcttctctataatatccctacatattatggcaaattacaaatgtatctgtttaatactgatacgtattgttaatgcaactgccttgaaatgggggtggcatggggagggttggtgaggggctaatatagtgctacccatgtccatctgttgtaccatccgtccatccgtctgtccacccgttgttctgtacataacaatttcagttacggtcagtatcactgctactataaatagaaaatccctgtcaacgtttacaagtattattttgcatcggata
gi|6 : A----TAC----A-----TT-TGT---------AATTTGCCATAAT-ATGTA-GGGATATTATAGAGAAGACGA-TTTTCTAAATTTTATTACAAATTGCAAC--AATATGTC-A--CATATTGC--CCCTTAGTGTAACAAAA-----T--G----T-TTTTGTAACAC-TAAGGATTGCGA-T-------GA-----CAACCCTTAATGTAgcaatatgtgacatattgttgcaatttgtaataaaatttagaaaatcgtcttctctataatatccctacatattatggcaaattacaaatgtatctgtttaatactgatacgtattgttaatgcaactgccttgaaatgggggtggcatggggagggttggtgaggggctaatatagtgctacccatgtccatctgttgtaccatccgtccatccgtctgtccacccgttgttctgtacataacaatttcagttacggtcagtatcactgctactataaatagaaaatccctgtcaacgtttacaagtattattttgcatcggata
gi|6 : ctcttagtgtaacacaatcagtttttgtATCCGA--TG---CAAAATAATACTTGT-AAACGTTGACAGGGATTTTCTA-TT-TAT-A-GTAGCAGTGATACTGACCGTAA-CTG-AAATTGTTATGTACAGAACAACGGGTGGACA-----G-A-------------CGGAT--------GGA------------CG---------GATGGTAC-A--ACAGATGGAC----ATGGGTAGCACTATATTAGCC--C----C------------------T-C---AC--C--Actgtttaatactgatacgtattgttaatgcaactgccttgaaatgggggtggcatggggagggttggtgaggggctaatatagtgctacccatgtccatctgttgtaccatccgtccatccgtctgtccacccgttgttctgtacataacaatttcagttacggtcagtatcactgctactataaatagaaaatccctgtcaacgtttacaagtattattttgcatcggata
gi|7 : ctcttagtgtaacacaatcagtttttgttacattaagggttgtcatcgcaatccttagtgttacaaaaacattttgttacactaaggggcaatatgtgacatattgttgcaatttgtaataaaatttagaaaatcgtcttctctataatatccctacatattatggcaaattacaaatgtatctgtttaatactgatacgtattgttaatgcaactgccttgaaatgggggtggcatggggagggtTGAAGATCTGTTT-A------ACTTGCATCGGA--TG---CAAAATAATGCCGGT-AAGCGTTGACAGCGATTTTCTATTT-T-T-A-TCAACAATGGCATTAACCTTAACCTT-AAATCGTGACGTACGGA-------------A-----G-AAGGGGCGGACACTCGGAT--------AGA------------CG---------AACAGTAC-G--ACGGACGGAC----TTAGGTAGCATTATA-----C--C----C------------------C-CA--AC--C--CCA-C---CC----AGCCCT-----TCTC----AAG----C-----TTGCAT---------AA------ACAAT-ACGTA-TCAGTATTA---AACAGATAAGTTGTATAAACTGTG-TA-AT-TTGCCAT--AATATGTa
gi|7 : ------------------T-TA--AA--C--AGA-T---AA----G----T-----TGTA----TAA----A-----CTGTGT---------AATTTGCCATAAT-ATGTA-G-----------AAAAGGTGA-TTACCTAAGTTTTGTTATATATTGCAAC--AATATGTC-T--CATATCGC--ACCTTAATGTAACACAA-----T--A----T-TTTTTTTACAT-TAAG------GG-T--------T-----TAATGCTTagaaaaggtgattacctaagttttgttatatattgcaacaatatgtctcatatcgcaccttaatgtaacacaatattttttttacattaagggtttaatgctttcactggaaatagttattgatactgtt
gi|8 : tgaagatctgtttaacttgcatcggatgcaaaataatgccggtaagcgttgacagcgattttctatttttatcaacaatggcattaaccttaaccttaaatcgtgacgtacggaagaaggggcggacactcggatagacgaacagtacgacggacggacttaggtagcattatacccccaaccccacccagcccttctcaagcttgcataaacaatacgtatcagtaTAACGGTT--AT--T-T--------------ATAACCACAACCC-TTAGTGTAACA-A-A-AA--------------T-------A----A--G---TTT-------------A----AGA-------AAA----TCTTAT--TGTGATGA----TAA-ATA--------T-AT------T---TT--TGTCACACTAAGGGT-TG--ACGA-ATATGA---ATTGTA--TAGTCATTCATTAATAATTTGTTAACAA-----CAGA--CCTAATGTTTACA---TACTTGTTGGCCCTTATAC-TTAA--------------------TGAAAGTTAATATGGTATAAATAATACAA-CCAACACGAAATGTAACACACACACCATATAAACATATTCCTA------TATTTAATCTAAGCAATTGTACAGTACAATTTCTTGATTTCATCAGAGATATAAAATACTATTATCTGTC-------TCATACATGTTCCTACCTAGTATATGAACAAAAGAACAGTTC-AACGTGTTACCTGTTCCCTTTTTAGCTtcactggaaatagttattgatactgtt
gi|9 : G---------GACAGTAC-G--ACGGACGGACGGAGATGGGTAGCACTATATC--CCATC----CCATTTTAAGACGGTGGTTT-AA--ACAAC--ACG-T---AACAACA----T-----TAAACAAATAA----A-----TTGTATAAATTGTGTAATTTGCTATAAT-ATATA-GAGATATCATAGAGAAGTTGA-GTTCTGAAATTTTGTTACATATTGCCACTTAGTTTAACAA--AATAT-G------TT--TTTAACAAAA-----T--A----T-GTTTGTTAAAC-TAAG------GG-TTGCA---GTTA---TAACCCCTAGTGT
gi|9 : ATATGTTTGTTAAACTAAGGGTTGCAG--T-T--------------AT------AACCC-CTAGTGTTACA-A-ATA---------------T-------------------T---------------G----A----------------TTTTGT--AG-GGTAA----CAA---A--------T-AT------TGAGTT--TGTTACACTAAGGGA-TG--tacaaatattgattttgtagggtaacaaatattgagtttgttacactaagggatgttgttacattaaagccacaaagcatttacacacttgatatagtata
gi|9 : ggacagtacgacggacggacggagatgggtagcactatatcccatcccattttaagacggtggtttaaacaacacgtaacaacattaaacaaataaattgtataaattgtgtaatttgctataatatatagagatatcatagagaagttgagttctgaaattttgttacatattgccacttagtttaacaaaatatgtttttaacaaaATGTA-A--CA-A-CAT--CCCTTAGTGTAACAAAC-----TCAA----T-ATTTGTTACCC-TAttgttacattaaagccacaaagcatttacacacttgatatagtata
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|17 ): AAAATGCTATGGTTAAAAAAAGCGGATTTTATAAAAATGATTTTTTGTCGGATTATCATGCGCGATAATAGCTATGTATGATTTGAGG
Unaligned ( gi|19 ): ACTAAAACGATCAATAGTAAAATTCATCAGATTGTTAAACAAGTATTAATGAAACA
Alignments
lowQualScore : 111111111 3333333333333333 88888888888888888888888888888888888888888888888888888888888888888888888888888888888 7777777777777777777777777777777777777 111 1 22222 11 1111 111111 11 222 4444444444444444444 1 1 1 1 222222 3333333 11 1 222222 222 33 1 11 11 111111 11111 66666666666666666666666666666666666 11111111 22222222222222222222222 6666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666 111111 111111 1111 111 111111 333333333333333333333333
lowQualScore : 1 555555555 7777777777777777 555 2 2 99999999999999999999999999999999999999999999999999999999999999999999999999999999999 2 55 2222222222222222222222222222222222222 444 2 000 0 00000 1 11 222 0 7777 3 555555 88 333 6 0 7 7 3333333333333333333 1 1 5 5 5 5 1 1 999999 1 1 2222222 66 1 5 1 888888 1 1 111 1 1 1 00 1 1 1 1 1 1 1 1 1 2 77 8 1 11 8 6 666666 66 9999 5 5 5 77777 2 6 88888888888888888888888888888888888 88888888 77777777777777777777777 4 66 9999 66 5555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555 3 55 3 3 7777 0 4 777777 2 1 3 000000 3 5555 55 6666 555 3 111 55 555 0 3 111111 3 888888888888888888888888 9999
lowQualScore : . ......... ................ ... . . ................................................................................... . .. ..................................... ... . ... . ..... . .. ... . .... . ...... .. ... . . . . ................... . . . . . . . . ...... . . ....... .. . . . ...... . . ... . . . .. . . . . . . . . . . .. . . .. . . ...... .. .... . . . ..... . . ................................... ........ ....................... . .. .... .. ..................................................................................................................................... . .. . . .... . . ...... . . . ...... . .... .. .... ... . ... .. ... . . ...... . ........................ ....
lowQualScore : 0 444444444 1111111111111111 888 1 1 00000000000000000000000000000000000000000000000000000000000000000000000000000000000 4 66 3333333333333333333333333333333333333 444 7 444 0 00000 7 00 222 8 0000 2 333333 33 333 7 7 3 3 3333333333333333333 0 0 5 0 0 0 0 0 000000 0 0 5555555 55 0 5 0 555555 0 0 000 0 0 0 55 0 0 0 0 0 0 0 0 0 8 00 0 0 00 0 7 444444 99 8888 0 0 0 44444 1 2 22222222222222222222222222222222222 11111111 22222222222222222222222 4 11 4444 99 4444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444 6 00 6 6 7777 7 0 000000 3 0 6 555555 5 5555 00 5555 444 6 444 00 888 2 1 222222 3 999999999999999999999999 4444
consensus : GAAAATCGTATTCCAGGGATAAGTATATTTTT---------GTTACACTAAGGGTT--AT--T-TAT-A-CCGCAACCC---TTAGTGTAA-CA-A-----A-----A---------------T-------AA-----G---T------A----AC---AC------------CG----CAACCCT-TA--GTGTAAC----GACA-A----AT-----------ATAT------T---TTTGTTACACTAAGGGT-TG--ACGA-ATACGA---ATTGTA--TAGTCATTCGTTAGTAA----TTTATTAACAAAATCACAGA--CCAAACGTTTACA---TACTCGTTGGACCTTATACATTAAAGATGTAAGAA--TGTA--TTGAAAGTTAATNTGGCATAAATNATACAAGCCAACACGAAATGTAACACGCACACCNTATAANCATATTCCTAGTCCTATATTTNATCTAAGCAATTGTACAGTACAANTTCTTGATTTCACCAGAGATATAAAATACTATTATCTGTCTCTCATTTCATACATGTTCCTACCTAGTATATGANCGAAAGNACAGTTCAAANGTGTTACCTGTTCCCTTTNTAGCTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGAGAGAGAAAAATATCGAAACGACATGAATGCCCCCCNCCCCACACATCTTNCNATTNTTCGCAAACTCTGTCCGAGGTATNTTGNTTCTGAACACNTGCATGAAGTTTCATCAAAATTGNATTAAAANAAGGNCGGTCGAGCGGTNGCNGTGNTTTTCTGCTTTTAGTAACGATGACGTTGACCTTGACCCGAAAA-TCGTGAAACGCAAACGCATCCGAAGTATCTCTG-TTCTGAACATCTGTGT-A------ACTTGCATCGGA--TG---NAAAATAATGCCGGT-AAGCGTTGACAGCGATTTTCTA-TT-T-T-A-GTAACAGTGACATTGACCTTGACCTGAAAATCGTGACGTACGGA-------------A-----G-A-------------CGGAC--------GGA------------CG---------GACGGTAC-G--ACGGACGGAC----ATGGGTAGCACTATATC--CC---C----C------------------T-CA--AC--C--A------CA-T---AA----A----T-----TGCA----TAA----A-----T--TGCGT---------A-----AT------------TTGCCATA-A--T-AT-GTA----GGGATA-TTA------TAGAGAAGATGATTNC-CTAAAT------TTTGTTACATATTGCAA----C--AATA----TGT---C-A---CATATCGC--CCCTTAGTGTAACAA-AAT--AT-TTTTGTTACAC-TAAG------GG-T-------GT-----CAAC----CCTTAGTGTA
Reference ( family-3843 ) : GAAAATCGTATTCCAGNGATAAGTATATTTTT---------GTTACACTAAGGGTT--AT--T-TAT-A-CCGCAACCC---TTAGTGTAA-CA-A-----A-----A---------------T-------AA-----G---T------A----AC---AC------------CG----TAACCCT-TA--GTGTAAC----GATA-A----AT-----------ATAT------T---TTTGTTACACTAAGGGT-TG--ACGA-ATACGA---ATTGTA--TAGTCATTCATTAGTAA----TTTATTAACAAAATCACAGA--CCAAACGTTTACA---TACTCGTTGGACCTTATACATTAAAGATGTAAGAA--TGTA--TTGAAAGTTAATNTGGCATAAATNATACAAGCCAACACGAAATGTAACACGCACACCNTATAANCATATTCCTAGTCCTATATTTNATCTAAGCAATTGTACAGTACAANTTCTTGATTTCACCAGAGATATAAAATACTATTATCTGTCTCTCATTTCATACATGTTCCTACCTAGTATATGANCGAAAGNACAGTTCAAANGTGTTACCTGTTCCCTTTNTAGCTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGAGAGAGAAAAATATCGAAACGACATGAATGCCCCCCNCCCCACACATCTTNCNATTNTTCGCAAACTCTGTCCGAGGTATNTTGNTTCTGAACACNTGCATGAAGTTTCATCAAAATTGNATTAAAANAAGGNCGGTCGAGCGGTNGCNGTGNTTTTCTGCTTTTAGTAACGATGACGTTGACCTTGACCCGAAAA-TCGTGAAACGCAAACGCATCCGAAGTATCTCTG-TTCTGAACATCTGTGT-A------ACTTGCATCGGA--TG---NAAAATAATGCCGGT-AAGCGTTGACAGCGATTTTCTA-TT-T-T-A-GTAACAGTGACATTGACCTTGACCTGAAAATCGTGACGTACGGA-------------A-----G-A-------------CGGAC--------GGA------------CG---------GACGGTAC-G--ACGGACGGAC----ATGGGTAGCACTATATC--CC---C----C------------------T-CA--AC--C--A------CA-T---AA----A----T-----TGTA----TAA----A-----T--TGCGT---------A-----AT------------TTGCCATA-A--T-AT-GTA----GGGATA-TTA------TAGAGAAGATGATTNC-CTAAAT------TTTGTTACATATTGCAA----C--AATA----TGT---C-A---CATATCGC--CCCTTAGTGTAACAA-AAT--AT-TTTTGTTACAC-TAAG------GG-T-------GT-----CAAC----CCTTAGTGTA
gi|1 : GAGAATCTTATTCCAGGGATAGGTATATCTTT---------GTTACACTAAGGGTT--AT--T-TAT-AACTGCAACCC---TTAGTGTAA-CA-A-----A-----A---------------T-------AA-----G---T------A----AC---AC------------AA----TAAGTTT-TG--ATAAGAC----GATA-A----GT-----------ATAT------T---TTTGTTACACTAAGGGT-AG--ACGA-ATATGA---ATTGTA--TAGTCATTCATTAGTAA----TTTATTTACAAAATTACAGA--CCAAACGTTTACA---TACTTGTTGGACCTTATGTATTAAAAATGTAAAAA--TGTA--TTAAAAATTAATTTGACATAAATTAT-CAAGCCAACACAAAAT-TAA-ATGTACACTTTATAATCATATTCCTAGTCCTATATTTTATCTAAGCAATTGTACAGTACAAGTTCTTGATTTCACCAGAGATATAAAATACTATTATCTGTCTCTCATTTCATACATGTTCCTACCTAGTATATG-TCGAAAATACAGTTCAAAAGTGTTACTT------TTTGTAGCT
gi|1 : AAAGAGAGAAAAATATCAAAACGACATGAATGTCCCCCACCCCACACATCTTACAATTGTTCGCAAACT-TGTCCGAGGTATCTTGGTTCTGAACACCTACATGAAGTTTCATCAAAATTGGATTAAAAGAAGGGCAGTCAAGCGGTAGCGGTGATTTTCTGCTTTTAGTAATGATGACATTGACCTTGACCCGAAAAATCGTGAAATGCAAACGCATCCGAATTATCTCTG-TTCTGAACATCTGTGT-ATTTGTTACTTGCATCTGA--TG---GGAAATAATGCCGGT-AATTGTTGACAGCAATTTTCTA-TT-T-T-ATGTAACAGTGACATTGACCTTGACCTGAAAATCGTGATTTACGAA-------------A-----A-A-------------CAGAA--------GGA------------CA---------GACGGCAC-G--ACAGACGGAC----ATGGGTAGCACTATATC--TC---C----C------------------T-CA--AC--C--A------TA-T---AA----A----T-----TGTA----TAA----A-----T--TGTGA---------A-----AT------------TTGCCATA-A--TAAT-GCA----GGGATA-TTA------TAGAGAAGATGATTAA-CTAAAT------TTTGTTGCATATTGCAA----C--AATA----TGT---C-A---CAAATAGC--CCTTTAGTGAAACAA-AAC--AT-TTTTGTTACAC-TAAG------GG-T-------GT-----CAAC----CCTTAGTGTAacaatttagtaatacctcatgattcatgactaatccctttccaaaataaccaaaacattcactgaaataatgttttgtttgtaagacttcttacttttctttttataattatcatttttccaatcttccacagcatatttacagtcacatttgttagttaaaatatacacgaaaaaaagagagaaaaatatcaaaacgacatgaatgtcccccaccccacacatcttacaattgttcgcaaacttgtccgaggtatcttggttctgaacacctacatgaagtttcatcaaaattggattaaaagaagggcagtcaagcggtagcggtgattttctgcttttagtaatgatgacattgaccttgacccgaaaaatcgtgaaatgcaaacgcatccgaattatctctgttctgaacatctgtgtatttgttacttgcatctgatgggaaataatgccggtaattgttgacagcaattttctattttatgtaacagtgacattgaccttgacctgaaaatcgtgatttacgaaaaacagaaggacagacggcacgacagacggacatgggtagcactatatctccctcaaccatataaattgtataaattgtgaaatttgccataataatgcagggatattatagagaagatgattaactaaattttgttgcatattgcaacaatatgtcacaaatagccctttagtgaaacaaaacatttttgttacactaagggtgtcaacccttagtgtaccca
gi|10 : gagaatcttattccagggataggtatatctttgttacactaagggttatttataactgcaacccttagtgtaacaaaataagtaacacaataagttttgataagacgataagtatatttttgttacactaagggtagacgaatatgaattgtatagtcattcattagtaatttatttacaaaattacagaccaaacgtttacatacttgttggaccttatgtattaaaaatgtaaaaatgtattaaaaattaatttgacataaattatcaagccaacacaaaattaaatgtacactttataatcatattcctagtcctatattttatctaagcaattgtacagtacaagttcttgatttcaccagagatataaaatactattatctgtctctcatttcatacatgttcctacctagtatatgtcgaaaatacagttcaaaagtgttactttttgtagctacaatttagtaatacctcatgattcatgactaatccctttccaaaataaccaaaacattcactgaaataatgttttgtttgtaagacttcttacttttctttttataattatcatttttccaatcttccacagcatatttacagtcacatttgttagttaaaatatacacgaaaaACGC---TTAGTGTAA-CA-AC----A-----A---------------TTGTTTCTAA-----GGGTT------G----AC---AC------------CG----TAACC-T-TA--GTGTATC-------A-A----AA-----------ATGT------T---TTTGTTATACTAAGGGT-TGCCACAA-Accca
gi|10 : tattgtatttatattcgtcataccattgtttatagaatgttatggttataaaaaagcggattttatgccggattatcatgatcaataatagctatgtatgc---------A-----AT------------TT--CGTACA--T-ATAGCA----GGGATAATTAAATTTCTAAAAGAAATG-TTACACTAAATGAACCCTTT-TTATA-AT--CAAATGTC--AATA----CATGAAC-AAAACATA-CGC-----TTAGTGTAACAACAAT---T-GTTT------C-TAAG------GGTT-------GA-----CACCGTAACCTTAGTGTAatgttttgttcatgtattgacatttgattataaaaagggttcatttagtgtaacatttcttttagaaatttaattatccctgctatatgtacgaaattggagcatatagtttt
gi|10 : tattgtatttatattcgtcataccattgtttatagaatgttatggttataaaaaagcggattttatgccggattatcatgatcaataatagctatgtatgctttgtggcaacccttagtataacaaaaacatttttgaCAGGGATAATTAAATTTCTAAAAGAAATGTTACACTAA--------------AT-G-----AACCC---TTTTTATAATCA-AATGTCA-----A---------------T-------AC-----A---TG-----A----ACAA-AA------------CA----T-ACGCT-TA--GTGTAAC----AACA-A--------------------------------TTGTT--TCTAAGGGT-TG--ACggagcatatagtttt
gi|11 : tattgtatttatattcgtcataccattgtttatagaatgttatggttataaaaaagcggattttatgccggattatcatgatcaataatagctatgtatgctttgtggcaacccttagtataacaaaaacatttttgatacactaaggttacggtGAAAATCGTGTTTCGGCGACAAGTATATGTTT---------GTTTTACTAAGGGTT--AT--T-TATAA-CCGCAAACA---TTAGTGTAA-GG-A-----A-----A---------------T-------AA-----G---T------ctatatgtacgaaattggagcatatagtttt
gi|12 : tnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaaattacacaaattaaagcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaGAAAATCGTATTCCAAAGATAAGTATATTTTC---------GTTACACTAAGGGTT--GT--T-TACAA-CTGCAACCC---TT
gi|13 : nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaTT---------GTTACACTAAGAGTT--AC--G-T------TGCGGTCC---TAAGTGTAA-CA-A-----A-----ACCCATTTTGTTACACT-------AA-----G---G------A----TCGCAAC------------CG----TAACCCT-AA--GTGTAAC----GA-A-A----AA-----------ACCTAAGGGGT---TTTGTTTCACTAAGAGT-T
gi|13 : ggtTTTTC---------GTTACACTTAGGGTT--ACGGT-T-------GCGATCC---TTAGTGTAA-CA-A-----A-----A---------------T-------GGGTTTTG---T------T----AC---ACTTAGGACCGCAACG----TAACTCT-TA--GTGTAAC----AACA---------------------------------CTTGTTACACTAAGCGTATG--TTTG-GCACA------TGTA--TAGACATTTGATAATAA----cacttgttacactaagcgtatgtttggcacatgtatagacatttgataataaaacgggttctctaagtaaaaccttttttaactagaaatttatttatccctgctatgaaatg
gi|13 : ggtaactcttagtgaaacaaaaccccttaggttCAGGGATAAATAAATTTCTA--------GTTAAA--AAAGGTTTTAC--T-TAG-A---G-AACCCGTTTTATTAT---CA-A-----ATGTCTA---------------T-------AC-----A---TGTGCCAA----AC---AT--------------------ACGCT-TA--GTGTAAC-------A-A----GT-----------GT--------------TGTTACACTAAGAGT-T---ACGaacgggttctctaagtaaaaccttttttaactagaaatttatttatccctgctatgaaatg
gi|14 : ggtaactcttagtgaaacaaaaccccttaggttttttcgttacacttagggttacggttgcgatccttagtgtaacaaaatgggttttgttacacttaggaccgcaaCATTGACCTTGACTTGAAAA-TCGTGAAACGCCTCCGCATCTGTAGTATC-------------ATCTGTGT-A------ACTTGCATCGGA--CG---GAAAATAATGCCGGT-AAGCATTGACAGCGATTTTCTA-TT-T-TAA-GTATCAGTGATATTGACCTTGACCTGCAAATCGTAACGTACGGA-------------AAAATGG-A-------------CAGACAAACGTATGGG------------CG---------AACGGTAC-G--ACAGACGGAC----AGGTGTAGCACTATATT--TC---C----C------------------ctatgaaatg
gi|15 : TTACATTAAGG-----AT--T-GAC-A-CCGCAACCT---TCAGTGTAA-CA-A-----A-----cat
gi|15 : C---TTAGTGTAA-CA-ATTAC-A-----T---------------T-------AA-----GGATT------G----AC---AC------------CG----CAACCTT-CA--GTGTAAC----AAttgttacactaagcatatgtttgatacatgtattgacatttgattatacaacagattcagttagggttataatgtttgttcaactagaaatttatcctgctatggaatggggacatatggtgt
gi|15 : t-CTGAAT------CT-GTTGTATAAT-CAAATGTC--AATACATGTAT---C-AAA-CATAT-GC-----TTAGTGTAACAA--------------TTACAT-TAAG------GA-TTGACACCG------CAAC----CTTCAGTGTAcatatgtttgatacatgtattgacatttgattatacaacagattcagttagggttataatgtttgttcaactagaaatttatcctgctatggaatggggacatatggtgt
gi|16 : tttgt------GA-T-------GT-----CAAC----CCTTAGTGTAttagggttataatgtttgttcaactagaaatttatcctgctatggaatggggacatatggtgt
gi|16 : atgcATGTCAA--CCCTTAGTGTAACA-----------TTTGTTACAacatttgttacatgtattggcatttgattataaaacaggttcatttagtgtaacaattttttttttttaaacttagaaatttatttatccct
gi|16 : atgcgTGTTACACTAAGGGT-TG--ACtgtattggcatttgattataaaacaggttcatttagtgtaacaattttttttttttaaacttagaaatttatttatccct
gi|18 : atgcgatGAAATTCTTATTCCAGGGAAAGGAATATTTT----------GTTACACCAAGGGTT--AT--T-TAT-A-CCGCAAtttgttacatgtattggcatttgattataaaacaggttcatttagtgtaacaattttttttttttaaacttagaaatttatttatccct
gi|2 : aGAACATCGTACTTCTTTGATAAATATATTTTT---------GTTACACTAAGGATT--AT--T-TNN-N-NNNNNNNNN---NNNNNNNNN-NN-N-----N-----N---------------N-------NN-----N---N------N----NN---NN------------NN----NNNNNNN-NN--NNNNNNNAA--GACA-ATCTTATTTCTTTGATAAATATAG----T---TTTGTTACACTAAGGGT-T
gi|20 : tagagtaatgctatattagtaatagcatcatcttgagttataattgtcagaaaaggaatacttatgttgcatggggaaggggggtcgagattcagggagaaaagggtcaataacaagttcatcaaaattagaataatgcataaatactttcatttgtcactcattaatagttgtatcctgtttctcagatgttcaactcttgaaagtgacatagcgcgctctagttttattttggttttaaaactgcttcattttgtcaccatcgttataaaagcattcatctaaaagtaggctgacatcgcaatatatcataaaatgtgttttatcttggacatttgtagttatggaacattactaatacaattatcttagtgaaaataaataacattaacgaagagtaagtagactcatatcatctcaaactcttgtttaaaaaacgtaaataaacaaacttatataaaattacgaatctcctttaaatcttcggttttccacttcattattttaagttatttaccagtgttaagaaaaccgtccaacaaagtttttctaagggttgtttnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaaCGGC-------------A-----G-A-------------CAGAC--------GGA------------CG---------GACGA-ACGG--ACGGACGGAC----AGTGATAACATTGTa
gi|3 : GTAA--ATGACGTTGACCTTGACCCGAAAA-TCGTGAAACACAAACGCATCTGAAGTCTCACTG-TTCTGAACATCTGTGT-A------TCTTACATTGGA--GG---GGAAATAATACTGGT-AAGCGTTGACAGCGATT---TA-TC-T-T--------AGTGACATTGACCTTAACCTGAAAATCGTGATGTACGGA-------------A-----GAA-------------CGGAC--------GGACAGACGGATAGGCG---------AACGGTAC-G--ACGGACGGAC----ATGGGTAGCACTATA-C--TC---C----C------------------T-CACCAC--C--A------CACC---CA----A----T-----GGCAATT-TCA----AGGCTGT--TGCAT---------A-----A------------------ACA-A--T-AT-GTA----TCAGTA-TTA------AACATATAA--ATTGT-ATAAAT------TGTG-TA-AT-TTGCCA----T--AATA----TGT---tcat
gi|3 : atttattgccgcaacc------------------T-TA--AA--C--A------TA-T---AA----A----T-----TGTA----TAA----A-----T--TGTGT---------A-----AT------------TTGCCATA-A--T-AT-GTA----GGGATG-TTA------TAGAGAAGATGATTAC-CTAAAT------TTTGTTACATATTGCAA----C--AATA----TGT---C-A---CATATGGA--CCCTTAGTGTAACAA-AAT--AT------TTACAC-TAAGGGTTGCGG-T-------GT-----CAAC----CCCTGGTGTAagggatgttatagagaagatgattacctaaattttgttacatattgcaacaatatgtcacatatggacccttagtgtaacaaaatatttacactaagggttgcggtgtcaacccctggtgtaacagaaactgattgacaccgcaacccttagtgtaacagttgttacaattgttactgtttcactaagggttgcaacagacgtggcaaccagtacttacaagaatttaaacaatcatatattctaaacgtagacaatgtatcgtgaatgctatacagtatagatataagaacttgtaacttgtaagtcgaaataaacttctgtattt
gi|3 : atttattgccgcaaccgtaaatgacgttgaccttgacccgaaaatcgtgaaacacaaacgcatctgaagtctcactgttctgaacatctgtgtatcttacattggaggggaaataatactggtaagcgttgacagcgatttatcttagtgacattgaccttaacctgaaaatcgtgatgtacggaagaacggacggacagacggataggcgaacggtacgacggacggacatgggtagcactatactccctcaccaccacacccaatggcaatttcaaggctgttgcataaacaatatgtatcagtaT---------GTTACACTAAGGGTT--GC--GGTGT------CAATCAG--TTTCTGTTA-CA-C-----C-----A---------------G-------GG-----G---TT-----G----AC---AC------------CG----CAACCCT-TA--GTGTAA------ATA-----------------------------T---TTTGTTACACTAAGGGT-acagaaactgattgacaccgcaacccttagtgtaacagttgttacaattgttactgtttcactaagggttgcaacagacgtggcaaccagtacttacaagaatttaaacaatcatatattctaaacgtagacaatgtatcgtgaatgctatacagtatagatataagaacttgtaacttgtaagtcgaaataaacttctgtattt
gi|3 : atttattgccgcaaccgtaaatgacgttgaccttgacccgaaaatcgtgaaacacaaacgcatctgaagtctcactgttctgaacatctgtgtatcttacattggaggggaaataatactggtaagcgttgacagcgatttatcttagtgacattgaccttaacctgaaaatcgtgatgtacggaagaacggacggacagacggataggcgaacggtacgacggacggacatgggtagcactatactccctcaccaccacacccaatggcaatttcaaggctgttgcataaacaatatgtatcagtattaaacatataaattgtataaattgtgtaatttgccataatatgtagggatgttatagagaagatgattacctaaattttgttacatattgcaacaatatgtcacatatggTTACACTAAGGGTT--GC--GGTGT------CAACCC---CTGGTGTAA-CA-G-----A-----AAC-------------T-------GA-----T---T------G----AC---AC------------CG----CAACCCT-TA--GTGTAACAGTTGTTACA----AT------------TGT------T---ACTGTTTCACTAAGGGT-TG---CAACAGACG-----TGGCAACCAGT-ACTTACAAG-AA----TTTA--AAC--AATCATATATTCTAAACGTAGACAATGTA-TCG-TGAATGCTATACAGTATAGATATAAGAACTTGTAACTTGTAAGTgttgttacaattgttactgtttcactaagggttgcaacagacgtggcaaccagtacttacaagaatttaaacaatcatatattctaaacgtagacaatgtatcgtgaatgctatacagtatagatataagaacttgtaacttgtaagtcgaaataaacttctgtattt
gi|4 : atttattgccgcaaccgtaaatgacgttgaccttgacccgaaaatcgtgaaacacaaacgcatctgaagtctcactgttctgaacatctgtgtatcttacattggaggggaaataatactggtaagcgttgacagcgatttatcttagtgacattgaccttaacctgaaaatcgtgatgtacggaagaacggacggacagacggataggcgaacggtacgacggacggacatgggtagcactatactccctcaccaccacacccaatggcaatttcaaggctgttgcataaacaatatgtatcagtattaaacatataaattgtataaattgtgtaatttgccataatatgtagggatgttatagagaagatgattacctaaattttgttacatattgcaacaatatgtcacatatggacccttagtgtaacaaaatatAGAAAGAGAAAAATATCGAAACGACATGAATACCCCCTCCCTC---TATCTTTCTATTTTTTGCAAAcgaaataaacttctgtattt
gi|4 : TTTCTATTTTTTGCAAAGGTGAT------CTTGACTCAAGAA-TCCATAAGCGCAAACTCGTCCGAAGTATAT-TGTTTCTGAACACGTGTATGA------AGTTTCATCAAAATTGTATTAAAATAAGGTCGGTCGAGCGGTTACTGTGCTTTTCTG-CTAT-A-A-GTAACGATGAC--TGACTTTGACCAGAAAGTCGTGAggtgatcttgactcaagaatccataagcgcaaactcgtccgaagtatattgtttctgaacacgtgtatgaagtttcatcaaaattgtattaaaataaggtcggtcgagcggttactgtgcttttctgctataagtaacgatgactgactttgaccagaaagtcgtgaaacgctaacgtattcaaagtatctctgttctgaacatctgtaacttgcatgggatggaaaataatgccggtaaacgttgaaatcgattttctattttgagtaactgtgacgttgaccttgacctgaaaatcgttacgtacggaaggacggatggacgatacgcaaaagacggacatgggtagcactatatcccattcaccaccttaccccaacccccatgtcaagccggttgcataaataatacgtatcggtattaaacagatgaattgtataaattgtgtaatttgtcataatatgtagagataatatagagaagatgatttccttgattttgttacatatttcaacaatatgtcacatatcgcccttaagtgtaacaaaatatttttgttacactaacagttgcggtgacaagggagactttgttagtaaacgttttattaaatg
gi|4 : agaaagagaaaaatatcgaaacgacatgaataccccctccctctatcCGCAAACTC-GTCCGAAGTATATTGTTTCTGAACACGTGTATGAAGTTTCATCAAAATTGTATTAAAATAAGGTCGGTCGAGCGGTTACTGTGCTTTTCTGCTATAAGTAACGATGAC--TGACTTTGACCAGAAAG-TCGTGAAACGCTAACGTATTCAAAGTATCTCTG-TTCTGAACATC--TGT-A------ACTTGCATGGGA--TG---GAAAATAATGCCGGT-AAACGTTGAAATCGATTTTCTA-TT-T-TGA-GTAACTGTGACGTTGACCTTGACCTGAAAATCGTTACGTACGGA-------------A----------------------GGAC--------GGA------------TG---------GACGATAC-GCAAAAGACGGAC----ATGGGTAGCACTATATC--CC---A----T------------------T-CACCAC--CTTA------CC-C---CA----A----CCCCCATGT-----CAAGCCGG-----T--TGCAT---------A-----A------------------ATA-A--T-AC-GTA----TCGGTA-TTA------AACAGATGA--ATTGT-ATAAAT------TGTG-TA-AT-TTGTCA----T--AATA----TGT---aacgctaacgtattcaaagtatctctgttctgaacatctgtaacttgcatgggatggaaaataatgccggtaaacgttgaaatcgattttctattttgagtaactgtgacgttgaccttgacctgaaaatcgttacgtacggaaggacggatggacgatacgcaaaagacggacatgggtagcactatatcccattcaccaccttaccccaacccccatgtcaagccggttgcataaataatacgtatcggtattaaacagatgaattgtataaattgtgtaatttgtcataatatgtagagataatatagagaagatgatttccttgattttgttacatatttcaacaatatgtcacatatcgcccttaagtgtaacaaaatatttttgttacactaacagttgcggtgacaagggagactttgttagtaaacgttttattaaatg
gi|4 : agaaagagaaaaatatcgaaacgacatgaataccccctccctctatctttctattttttgcaaaggtgatcttgactcaagaatccataag------------------T-TA--AA--C--A------GA-T---GA----A----T-----TGTA----TAA----A-----T--TGTGT---------A-----AT------------TTGTCATA-A--T-AT-GTA----GAGATA-ATA------TAGAGAAGATGATTTC-CTTGAT------TTTGTTACATATTTCAA----C--AATA----TGT---C-A---CATATCGC--CCTTAAGTGTAACAA-AAT--AT-TTTTGTTACAC-TAAagagataatatagagaagatgatttccttgattttgttacatatttcaacaatatgtcacatatcgcccttaagtgtaacaaaatatttttgttacactaacagttgcggtgacaagggagactttgttagtaaacgttttattaaatg
gi|4 : agaaagagaaaaatatcgaaacgacatgaataccccctccctctatctttctattttttgcaaaggtgatcttgactcaagaatccataagcgcaaactcgtccgaagtatattgtttctgaacacgtgtatgaagtttcatcaaaattgtattaaaataaggtcggtcgagcggttactgtgcttttctgctataagtaacgatgactgactttgaccagaaagtcgtgaaacgctaacgtattcaaagtatctctgttctgaacatctgtaacttgcatgggatggaaaataatgccggtaaacgttgaaatcgattttctattttgagtaactgtgacgttgaccttgacctgaaaatcgttacgtacggaaggacggatggacgatacgcaaaagacggacatgggtagcactatatcccattcaccaccttaccccaacccccatgtcaagccggttgcataaataatacgtatcggta-CA-AC----A-----A---------------T-------AT-----G---T------C----AC---AT-------------A----TCGCCCT-TAA-GTGTAAC-------A-A----A------------ATAT------T---TTTGTTACACTAACAGT-TG---CGG-TGAC-A---AGGG-----AGAC-TTTGTTAGTAAACGTTTTATTAAcagttgcggtgacaagggagactttgttagtaaacgttttattaaatg
gi|4 : agaaagagaaaaatatcgaaacgacatgaataccccctccctctatctttctattttttgcaaaggtgatcttgactcaagaatccataagcgcaaactcgtccgaagtatattgtttctgaacacgtgtatgaagtttcatcaaaattgtattaaaataaggtcggtcgagcggttactgtgcttttctgctataagtaacgatgactgactttgaccagaaagtcgtgaaacgctaacgtattcaaagtatctctgttctgaacatctgtaacttgcatgggatggaaaataatgccggtaaacgttgaaatcgattttctattttgagtaactgtgacgttgaccttgacctgaaaatcgttacgtacggaaggacggatggacgatacgcaaaagacggacatgggtagcactatatcccattcaccaccttaccccaacccccatgtcaagccggttgcataaataatacgtatcggtattaaacagatgaattgtataaattgtgtaatttgtcataatatgtagagataatatagagaagatgatttccttgattttgttacatattt----TGT---C-A---C----CGCAACTGTTAGTGTAACAA-AA---ATATTTTGTTACACTTAAG------GG-C-------Gatg
gi|5 : agaaagagaaaaatatcgaaacgacatgaataccccctccctctatctttctattttttgcaaaggtgatcttgactcaagaatccataagcgcaaactcgtccgaagtatattgtttctgaacacgtgtatgaagtttcatcaaaattgtattaaaataaggtcggtcgagcggttactgtgcttttctgctataagtaacgatgactgactttgaccagaaagtcgtgaaacgctaacgtattcaaagtatctctgttctgaacatctgtaacttgcatgggatggaaaataatgccggtaaacgttgaaatcgattttctattttgagtaactgtgacgttgaccttgacctgaaaatcgttacgtacggaaggacggatggacgatacgcaaaagacggacatgggtagcactatatcccattcaccaccttaccccaacccccatgtcaagccggttgcataaataatacgtatcggtattaaacagatgaattgtataaattgtgtaatttgtcataatatgtagagataatatagagaagatgatttccttgattttgttacatatttcaacaatatgtcacatat------ATTTGCATCGGA--TG---CAAAGTAATACCCGT-AAGCGTTGACACCGATTTTCTA-----------------TGACATTGACCTTGTCCT-AAAATCGTGACGTACAGA-------------A-----G-AACGGG--------CGGAC--------AGA------------CGGATAGGCAAGACGGTAT-G--ACGGACGGAC----ATGGGTAGCAATATATC--CT---CACCAC------------------TGCA--AC--C---------CA-TTTCAA----AGCGGT-----TGCA----C-G----G-----T--TGCGT---------A-----A------------------ACA-A--T-AT-ATA----agggagactttgttagtaaacgttttattaaatg
gi|5 : A----TAA----A-----T--TGTGT---------A-----AT------------TTGCCATA-C--T-AT-GTA----GGGATA-TTA------TAGAAAAGATAATTTC-CTAAAT------TGTGTTACATATTGCAA----C--AATA----TGT---C-G---CATATCGC--CCCTTGGTGTAACAA-AAT--AT-TTTTGTTACAC-TTAG------GG-T-------tcagaattaaacagataaattgtgtaatttgccatactatgtagggatattatagaaaagataatttcctaaattgtgttacatattgcaacaatatgtcgcatatcgccccttggtgtaacaaaatatttttgttacacttagggttgcggtgtaacataaactaattgtgttacactaagggttgcggtgtaacataaactaattttgttacactaagggttgcggaatcaacccttagtgtaacaattgtt
gi|5 : atttgcatcggatgcaaagtaatacccgtaagcgttgacaccgattttctatgacattgaccttgtcctaaaatcgtgacgtacagaagaacgggcggacagacggataggcaagacggtatgacggacggacatgggtagcaatatatcctcaccactgcaacccatttcaaagcggttgcacggttgcgtaaacaatatatatcagaattaaacagTT--ATG-T-TAC-A-CCGCAACCC---TTAGTGTAA-CA-C-----A-----A---------------T-------TA-----GTT-T------ATGTTAC---AC------------CG----CAACCCT-AA--GTGTAAC----AA-A-A----AT-----------A---------T---TTTGTTACACCAAGG----G--GCGATATGCGACATATTGTtgcggtgtaacataaactaattgtgttacactaagggttgcggtgtaacataaactaattttgttacactaagggttgcggaatcaacccttagtgtaacaattgtt
gi|5 : atttgcatcggatgcaaagtaatacccgtaagcgttgacaccgattttctatgacattgaccttgtcctaaaatcgtgacgtacagaagaacgggcggacagacggataggcaagacggtatgacggacggacatgggtagcaatatatcctcaccactgcaacccatttcaaagcggttgcacggttgcgtaaacaatatatatcagaattaaacagataaattgtgtaatttgccatactatgtagggatattatagaaaagataatttcctaaattgtgttacatattgcaATATTTTT---------GTTACACTTAGGGTT--G------------CG------------GTGTAA-CATA-----A-----AC--------------T-------AATTGT-G---T------T----AC---AC------------------TAAGGGT-TGCGGTGTAAC-----ATA-A----AC------------TAA------T---TTTGTTACACTAAGGGT-TG--CGGA-ATactaattttgttacactaagggttgcggaatcaacccttagtgtaacaattgtt
gi|5 : atttgcatcggatgcaaagtaatacccgtaagcgttgacaccgattttctatgacattgaccttgtcctaaaatcgtgacgtacagaagaacgggcggacagacggataggcaagacggtatgacggacggacatgggtagcaatatatcctcaccactgcaacccatttcaaagcggttgcacggttgcgtaaacaatatatatcagaattaaacagataaattgtgtaatttgccatactatgtagggatattatagaaaagataatttcctaaattgtgttacatattgcaacaatatgtcgcatatcgccccttggtgtaacaaaTT---------GTTACACTAAGGGTTG-AT--T-------CCGCAACCC---TTAGTGTAA-CA-A-----A-----A---------------T-------TA-----GTT-T------ATGTTAC---AC------------CG----CAACCCT-TA--GTGTAAC-----ACA-A----TT-----------A-GT------T---TATGTTACACcaacccttagtgtaacaattgtt
gi|6 : atttgcatcggatgcaaagtaatacccgtaagcgttgacaccgattttctatgacattgaccttgtcctaaaatcgtgacgtacagaagaacgggcggacagacggataggcaagacggtatgacggacggacatgggtagcaatatatcctcaccactgcaacccatttcaaagcggttgcacggttgcgtaaacaatatatatcagaattaaacagataaattgtgtaatttgccatactatgtagggatattatagaaaagataatttcctaaattgtgttacatattgcaacaatatgtcgcatatcgccccttggtgtaacaaaatatttttgttacacttagggttgcg--CTCTTAGTGTAACAC-AATCAGT-TTTTGTTACAT-TAAG------GGTT-------GTCATCGCAAT----CCTTAGTGTttgtt
gi|6 : AT-A-TTGC--CCC---TTAGTGTAA-CA-A-----A-----A---------------T-------GTTTTT-G---T------A----AC---ACTAAGGATTG---CGATGACAACCCT-TA--ATGTAAC----AA-A-A----AC------------TGA------T---TGTGTTACACTAAGAGtacaaaaacattttgttacactaaggggcaatatgtgacatattgttgcaatttgtaataaaatttagaaaatcgtcttctctataatatccctacatattatggcaaattacaaatgtatctgtttaatactgatacgtattgttaatgcaactgccttgaaatgggggtggcatggggagggttggtgaggggctaatatagtgctacccatgtccatctgttgtaccatccgtccatccgtctgtccacccgttgttctgtacataacaatttcagttacggtcagtatcactgctactataaatagaaaatccctgtcaacgtttacaagtattattttgcatcggata
gi|6 : A----TAC----A-----T--T-TGT---------A-----AT------------TTGCCATA-A--T-AT-GTA----GGGATA-TTA------TAGAGAAGACGATTTT-CTAAAT------TTTATTACAAATTGCAA----C--AATA----TGT---C-A---CATATTGC--CCCTTAGTGTAACAA-AAT--GT-TTTTGTAACAC-TAAGGATTGCGA-T-------GA-----CAAC----CCTTAATGTAgtgacatattgttgcaatttgtaataaaatttagaaaatcgtcttctctataatatccctacatattatggcaaattacaaatgtatctgtttaatactgatacgtattgttaatgcaactgccttgaaatgggggtggcatggggagggttggtgaggggctaatatagtgctacccatgtccatctgttgtaccatccgtccatccgtctgtccacccgttgttctgtacataacaatttcagttacggtcagtatcactgctactataaatagaaaatccctgtcaacgtttacaagtattattttgcatcggata
gi|6 : ctcttagtgtaacacaatcagtttttgtATCCGA--TG---CAAAATAATACTTGT-AAACGTTGACAGGGATTTTCTA-TT-TAT-A-GTAGCAGTGATACTGACCGTAA-CTG-AAATTGTTATGTACAGAACAACGGGTGGACA-----G-A-------------CGGAT--------GGA------------CG---------GATGGTAC-A--ACAGATGGAC----ATGGGTAGCACTATATTAGCC---C----C------------------T-C---AC--C--A------ctgtttaatactgatacgtattgttaatgcaactgccttgaaatgggggtggcatggggagggttggtgaggggctaatatagtgctacccatgtccatctgttgtaccatccgtccatccgtctgtccacccgttgttctgtacataacaatttcagttacggtcagtatcactgctactataaatagaaaatccctgtcaacgtttacaagtattattttgcatcggata
gi|7 : ctcttagtgtaacacaatcagtttttgttacattaagggttgtcatcgcaatccttagtgttacaaaaacattttgttacactaaggggcaatatgtgacatattgttgcaatttgtaataaaatttagaaaatcgtcttctctataatatccctacatattatggcaaattacaaatgtatctgtttaatactgatacgtattgttaatgcaactgccttgaaatgggggtggcatggggagggtTGAAGATCTGTTT-A------ACTTGCATCGGA--TG---CAAAATAATGCCGGT-AAGCGTTGACAGCGATTTTCTATTT-T-T-A-TCAACAATGGCATTAACCTTAACCTT-AAATCGTGACGTACGGA-------------A-----G-AAGGGGCGGACACTCGGAT--------AGA------------CG---------AACAGTAC-G--ACGGACGGAC----TTAGGTAGCATTATACC--CCCAAC----C------------------C-CA--CC--C--AGCCCTTCT-C---AA----GC---T-----TGCA----TAA----A-----CAATACGT---------ATCAGTATTAAACAGATAAGTTG-TATA-AACT-GT-GTAATTTGCCATA-ATATG----TAGAAAAGGTGATTAC-CTAAGT------TTTGTTATATATTGCAA----C--AATA----TGT---C-T---CATATCGC--ACCTTAATGTAACAC-AAT--AT-TTTTTTTACAT-TAAG------GG-T--------T-----TAAT----GCTTa
gi|8 : TAACGGTT--AT--T-TAT-AACCACAACCC---TTAGTGTAA-CA-A-----A-----AA--------------T-------AA-----G---TTT----A----AG---A--------------------AAATCT-TA--TTGTGAT----GATA-A----AT-----------ATAT------T---TTTGTCACACTAAGGGT-TG--ACGA-ATATGA---ATTGTA--TAGTCATTCATTAATAA----TTTGTTAACAA-----CAGA--CCTAATGTTTACA---TACTTGTTGGCCCTTATAC-TTAA--------------------TGAAAGTTAATATGGTATAAATAATACAA-CCAACACGAAATGTAACACACACACCATATAAACATATTCCTA------TATTTAATCTAAGCAATTGTACAGTACAATTTCTTGATTTCATCAGAGATATAAAATACTATTATCTGTC-------TCATACATGTTCCTACCTAGTATATGAACAAAAGAACAGTTC-AACGTGTTACCTGTTCCCTTTTTAGCTtcactggaaatagttattgatactgtt
gi|9 : G---------GACAGTAC-G--ACGGACGGACGGAGATGGGTAGCACTATATC--CCAT-C----CCATTTTAAGACGGTGGTTT-AA--ACAAC--A------CG-T---AACAACA----T-----TAAACAAATAA----A-----T--TGTATAAATTGTGTA-----AT------------TTGCTATA-A--T-AT-ATA----GAGATA-TCA------TAGAGAAGTTGAGTTC-TGAAAT------TTTGTTACATATTGCCA----CTTAGTT----TAA---CAA---AATAT-G------TT--TTTAACAA-AAT--AT-GTTTGTTAAAC-TAAG------GG-TTGCA---GTTA---TAAC----CCCTAGTGT
gi|9 : ATATGTTT---------GTTAAACTAAGGGTTGCAG--T-TAT-------AACCC---CTAGTGTTA-CA-A-----AT----A---------------T-------------------------------------------------------TGATTTTGTA--GGGTAAC----AA---------------------ATAT------TGAGTTTGTTACACTAAGGGA-TG--tacaaatattgattttgtagggtaacaaatattgagtttgttacactaagggatgttgttacattaaagccacaaagcatttacacacttgatatagtata
gi|9 : ggacagtacgacggacggacggagatgggtagcactatatcccatcccattttaagacggtggtttaaacaacacgtaacaacattaaacaaataaattgtataaattgtgtaatttgctataatatatagagatatcatagagaagttgagttctgaaattttgttacatattgccacttagtttaacaaaatatgtttttaacaaaA----TGT---A-A---CA-A-CAT--CCCTTAGTGTAACAA-ACTCAAT-ATTTGTTACCC-TAttgttacattaaagccacaaagcatttacacacttgatatagtata
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|17 ): AAAATGCTATGGTTAAAAAAAGCGGATTTTATAAAAATGATTTTTTGTCGGATTATCATGCGCGATAATAGCTATGTATGATTTGAGG
Unaligned ( gi|19 ): ACTAAAACGATCAATAGTAAAATTCATCAGATTGTTAAACAAGTATTAATGAAACA
Alignments
lowQualScore : 111111111 4444444444444444 99999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999 6666666666666666666666666666666666666666666666 111 222222222222222 1111 1 11 222 4444444444444444444 1 1 1 1 222222 3333333 11 1 222222 222 33 1 11 11 111111 11111 66666666666666666666666666666666666 11111111 22222222222222222222222 66666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666 22222222222222222222222 111111 111111 1111 111 11111 444444444444444444444444
lowQualScore : 555555555 1111111111111111 555 2 2 00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 2 55 7777777777777777777777777777777777777777777777 2 000 0 8 777777777777777 4 6 0 1 4444 0 333 3 88 333 6 0 7 7 3333333333333333333 1 1 5 5 5 5 1 1 999999 1 1 2222222 66 1 5 1 888888 1 1 111 1 1 1 00 1 1 1 1 1 1 1 1 1 2 77 8 1 11 8 6 666666 66 9999 5 5 5 77777 2 6 88888888888888888888888888888888888 88888888 77777777777777777777777 4 66 9999 66 55555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555 44444444444444444444444 3 55 3 3 7777 0 4 777777 2 1 3 000000 3 5555 55 7777 555 4 222 5 33 3 11111 0 333333333333333333333333 9999
lowQualScore : ......... ................ ... . . ........................................................................................................... . .. .............................................. . ... . . ............... . . . . .... . ... . .. ... . . . . ................... . . . . . . . . ...... . . ....... .. . . . ...... . . ... . . . .. . . . . . . . . . . .. . . .. . . ...... .. .... . . . ..... . . ................................... ........ ....................... . .. .... .. ........................................................................................................... ....................... . .. . . .... . . ...... . . . ...... . .... .. .... ... . ... . .. . ..... . ........................ ....
lowQualScore : 444444444 9999999999999999 888 1 1 55555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555 2 33 9999999999999999999999999999999999999999999999 5 111 7 9 555555555555555 0 7 7 7 2222 6 555 7 33 333 7 7 3 3 3333333333333333333 0 0 5 0 0 0 0 0 000000 0 0 5555555 55 0 5 0 555555 0 0 000 0 0 0 55 0 0 0 0 0 0 0 0 0 8 00 0 0 00 0 7 444444 99 8888 0 0 0 44444 1 2 22222222222222222222222222222222222 11111111 22222222222222222222222 4 11 4444 99 55555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555 66666666666666666666666 6 00 6 6 7777 7 0 000000 3 0 6 555555 5 5555 00 1111 888 0 555 1 00 3 00000 4 333333333333333333333333 4444
consensus : GAAAATCGTATTCCAGGGATAAGTATATTTTT---------GTTACACTAAGGGTT--AT--T-TAT-A-CCGCAACCC---TTAGTGTAA-CA-A-----A-----A---------------T-------AA----G------------T------------A----A-------C---AC---------CG----C-----A-ACCCTTA--GTGTAAC--G------ACAA-----------------ATATAT------T---TTTGTTACACTAAGGGT-TG--ACGA-ATACGA---ATTGTA--TAGNCAT-TCGTTAGTAA----TTTATTAACAAAATCACAGA--CCAAACGTTTACA---TACTCGTTGGACCTTATACATTAAAGATGTAAGAA--TGTA--TTGAAAGTTAATNTGGCATAAATNATACAAGCCAACACGAAATGTAACACGCACACCNTATAANCATATTCCTAGTCCTATATTTNATCTAAGCAATTGTACAGTACAANTTCTTGATTTCACCAGAGATATAAAATACTATTATCTGTCTCTCATTTCATACATGTTCCTACCTAGTATATGANCGAAAGNACAGTTCAAANGTGTTACCTGTTCCCTTTNTAGCTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGAGAGAGAAAAATATCGAAACGACATGAATGCCCCCCNCCCCACACATCTTNCNATTNTTCGCAAACTCTGTCCGAGGTATNTTGNTTCTGAACACNTGCATGAAGTTTCATCAAAATTGNATTAAAANAAGGNCGGTCGAGCGGTNGCNGTGNTTTTCTGCTTTTAGTAACGATGACGTTGACCTTGACCCGAAAA-TCGTGAAACGCAAACGCATCCGAAGTATCTCTG-TTCTGAACATCTGTGT-A------ACTTGCATCGGA--TG---NAAAATAATGCCGGT-AAGCGTTGACAGCGATTTTCTA-TT-T-T-A-GTAACAGTGACATTGACCTTGACCTGAAAATCGTGACGTACGGA-------------A-----G-A-------------CGGAC--------GGA------------CG---------GACGGTAC-G--ACGGACGGAC----ATGGGTAGCACTATATC--CC---C----C------------------T-CA--AC--CA------CA-T------AA----A----TT--GC--A---T---AA----A-----T--T---------GCGTA-----AT------------TTGCCATA-A--T-AT-GTA----GGGATA-TTA------TAGAGAAGATGATTNC-CTAAAT------TTTGTTACATATTGCAA----C--AATA----TGT---C-A---CATATCGCCCCTTAGTGTAACAA-AAT--ATTTTTGTTACACTAAG------GG-T-------GT-----CAAC----CCTTAGTGTA
Reference ( family-3843 ) : GAAAATCGTATTCCAGGGATAAGTATATTTTT---------GTTACACTAAGGGTT--AT--T-TAT-A-CCGCAACCC---TTAGTGTAA-CA-A-----A-----A---------------T-------AA----G------------T------------A----A-------C---AC---------CG----C-----A-ACCCTTA--GTGTAAC--G------ACAA-----------------ATATAT------T---TTTGTTACACTAAGGGT-TG--ACGA-ATACGA---ATTGTA--TAGTCAT-TCGTTAGTAA----TTTATTAACAAAATCACAGA--CCAAACGTTTACA---TACTCGTTGGACCTTATACATTAAAGATGTAAGAA--TGTA--TTGAAAGTTAATNTGGCATAAATNATACAAGCCAACACGAAATGTAACACGCACACCNTATAANCATATTCCTAGTCCTATATTTNATCTAAGCAATTGTACAGTACAANTTCTTGATTTCACCAGAGATATAAAATACTATTATCTGTCTCTCATTTCATACATGTTCCTACCTAGTATATGANCGAAAGNACAGTTCAAANGTGTTACCTGTTCCCTTTNTAGCTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGAGAGAGAAAAATATCGAAACGACATGAATGCCCCCCNCCCCACACATCTTNCNATTNTTCGCAAACTCTGTCCGAGGTATNTTGNTTCTGAACACNTGCATGAAGTTTCATCAAAATTGNATTAAAANAAGGNCGGTCGAGCGGTNGCNGTGNTTTTCTGCTTTTAGTAACGATGACGTTGACCTTGACCCGAAAA-TCGTGAAACGCAAACGCATCCGAAGTATCTCTG-TTCTGAACATCTGTGT-A------ACTTGCATCGGA--TG---NAAAATAATGCCGGT-AAGCGTTGACAGCGATTTTCTA-TT-T-T-A-GTAACAGTGACATTGACCTTGACCTGAAAATCGTGACGTACGGA-------------A-----G-A-------------CGGAC--------GGA------------CG---------GACGGTAC-G--ACGGACGGAC----ATGGGTAGCACTATATC--CC---C----C------------------T-CA--AC--CA------CA-T------AA----A----TT--GC--A---T---AA----A-----T--T---------GCGTA-----AT------------TTGCCATA-A--T-AT-GTA----GGGATA-TTA------TAGAGAAGATGATTNC-CTAAAT------TTTGTTACATATTGCAA----C--AATA----TGT---C-A---CATATCGCCCCTTAGTGTAACAA-AAT--ATTTTTGTTACACTAAG------GG-T-------GT-----CAAC----CCTTAGTGTA
gi|1 : GAGAATCTTATTCCAGGGATAGGTATATCTTT---------GTTACACTAAGGGTT--AT--T-TAT-AACTGCAACCC---TTAGTGTAA-CA-A-----A-----A---------------T-------AA----G------------T------------A----A-------C---AC---------AA----T-----A-AGTTTTG--ATAAGAC--G------ATAA-----------------GTATAT------T---TTTGTTACACTAAGGGT-AG--ACGA-ATATGA---ATTGTA--TAGTCAT-TCATTAGTAA----TTTATTTACAAAATTACAGA--CCAAACGTTTACA---TACTTGTTGGACCTTATGTATTAAAAATGTAAAAA--TGTA--TTAAAAATTAATTTGACATAAATTAT-CAAGCCAACACAAAAT-TAA-ATGTACACTTTATAATCATATTCCTAGTCCTATATTTTATCTAAGCAATTGTACAGTACAAGTTCTTGATTTCACCAGAGATATAAAATACTATTATCTGTCTCTCATTTCATACATGTTCCTACCTAGTATATG-TCGAAAATACAGTTCAAAAGTGTTACTT------TTTGTAGCT
gi|1 : AAAGAGAGAAAAATATCAAAACGACATGAATGTCCCCCACCCCACACATCTTACAATTGTTCGCAAACT-TGTCCGAGGTATCTTGGTTCTGAACACCTACATGAAGTTTCATCAAAATTGGATTAAAAGAAGGGCAGTCAAGCGGTAGCGGTGATTTTCTGCTTTTAGTAATGATGACATTGACCTTGACCCGAAAAATCGTGAAATGCAAACGCATCCGAATTATCTCTG-TTCTGAACATCTGTGT-ATTTGTTACTTGCATCTGA--TG---GGAAATAATGCCGGT-AATTGTTGACAGCAATTTTCTA-TT-T-T-ATGTAACAGTGACATTGACCTTGACCTGAAAATCGTGATTTACGAA-------------A-----A-A-------------CAGAA--------GGA------------CA---------GACGGCAC-G--ACAGACGGAC----ATGGGTAGCACTATATC--TC---C----C------------------T-CA--AC--CA------TA-T------AA----A----TT--GT--A---T---AA----A-----T--T---------GTGAA-----AT------------TTGCCATA-A--TAAT-GCA----GGGATA-TTA------TAGAGAAGATGATTAA-CTAAAT------TTTGTTGCATATTGCAA----C--AATA----TGT---C-A---CAAATAGCCCTTTAGTGAAACAA-AAC--ATTTTTGTTACACTAAG------GG-T-------GT-----CAAC----CCTTAGTGTAacaatttagtaatacctcatgattcatgactaatccctttccaaaataaccaaaacattcactgaaataatgttttgtttgtaagacttcttacttttctttttataattatcatttttccaatcttccacagcatatttacagtcacatttgttagttaaaatatacacgaaaaaaagagagaaaaatatcaaaacgacatgaatgtcccccaccccacacatcttacaattgttcgcaaacttgtccgaggtatcttggttctgaacacctacatgaagtttcatcaaaattggattaaaagaagggcagtcaagcggtagcggtgattttctgcttttagtaatgatgacattgaccttgacccgaaaaatcgtgaaatgcaaacgcatccgaattatctctgttctgaacatctgtgtatttgttacttgcatctgatgggaaataatgccggtaattgttgacagcaattttctattttatgtaacagtgacattgaccttgacctgaaaatcgtgatttacgaaaaacagaaggacagacggcacgacagacggacatgggtagcactatatctccctcaaccatataaattgtataaattgtgaaatttgccataataatgcagggatattatagagaagatgattaactaaattttgttgcatattgcaacaatatgtcacaaatagccctttagtgaaacaaaacatttttgttacactaagggtgtcaacccttagtgtaccca
gi|10 : gagaatcttattccagggataggtatatctttgttacactaagggttatttataactgcaacccttagtgtaacaaaataagtaacacaataagttttgataagacgataagtatatttttgttacactaagggtagacgaatatgaattgtatagtcattcattagtaatttatttacaaaattacagaccaaacgtttacatacttgttggaccttatgtattaaaaatgtaaaaatgtattaaaaattaatttgacataaattatcaagccaacacaaaattaaatgtacactttataatcatattcctagtcctatattttatctaagcaattgtacagtacaagttcttgatttcaccagagatataaaatactattatctgtctctcatttcatacatgttcctacctagtatatgtcgaaaatacagttcaaaagtgttactttttgtagctacaatttagtaatacctcatgattcatgactaatccctttccaaaataaccaaaacattcactgaaataatgttttgtttgtaagacttcttacttttctttttataattatcatttttccaatcttccacagcatatttacagtcacatttgttagttaaaatatacacgaaaaACGC---TTAGTGTAA-CA-AC----A-----A---------------TTGTTTCTAA----GGGT---------T------------G----A-------C---AC---------CG----T-----A-ACC-TTA--GTGTATC-----------AA-----------------AAATGT------T---TTTGTTATACTAAGGGT-TGCCACAA-Accca
gi|10 : tattgtatttatattcgtcataccattgtttatagaatgttatggttataaaaaagcggattttatgccggattatcatgatcaataatagctatgtatgcA-----AT------------TT--CGTACA--T-ATAGCA----GGGATAATTAAATTTCTAAAAGAAATG-TTACACTAAATGAACCCTTT-TTATA-AT--CAAATGTC--AATA----CATGAAC-AAAACATA-CGC---TTAGTGTAACAACAAT---TGTTT------CTAAG------GGTT-------GA-----CACCGTAACCTTAGTGTAatgttttgttcatgtattgacatttgattataaaaagggttcatttagtgtaacatttcttttagaaatttaattatccctgctatatgtacgaaattggagcatatagtttt
gi|10 : tattgtatttatattcgtcataccattgtttatagaatgttatggttataaaaaagcggattttatgccggattatcatgatcaataatagctatgtatgctttgtggcaacccttagtataacaaaaacatttttgaCAGGGATAATTAAATTTCTAAAAGAAATGTTACACTAA--------------AT-G-----AACCC---TTTTTATAATCA-AATGTCA-----A---------------T-------AC----A------------TG-----------A----A-------C---AA---------AA----C-----ATACGCTTA--GTGTAAC--A------ACAA----------------------------------TTGTT--TCTAAGGGT-TG--ACggagcatatagtttt
gi|11 : tattgtatttatattcgtcataccattgtttatagaatgttatggttataaaaaagcggattttatgccggattatcatgatcaataatagctatgtatgctttgtggcaacccttagtataacaaaaacatttttgatacactaaggttacggtGAAAATCGTGTTTCGGCGACAAGTATATGTTT---------GTTTTACTAAGGGTT--AT--T-TATAA-CCGCAAACA---TTAGTGTAA-GG-A-----A-----A---------------T-------AA----G------------T------------ctatatgtacgaaattggagcatatagtttt
gi|12 : tnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaaattacacaaattaaagcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaGAAAATCGTATTCCAAAGATAAGTATATTTTC---------GTTACACTAAGGGTT--GT--T-TACAA-CTGCAACCC---TT
gi|13 : nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaTT---------GTTACACTAAGAGTT--AC--G-T------TGCGGTCC---TAAGTGTAA-CA-A-----A-----ACCCATTTTGTTACACT-------AA----G------------G------------A----T-------CGCAAC---------CG----T-----A-ACCCTAA--GTGTAAC--G------AAAA-----------------A-ACCTAAGGGGT---TTTGTTTCACTAAGAGT-T
gi|13 : ggtTTTTC---------GTTACACTTAGGGTT--ACGGT-T-------GCGATCC---TTAGTGTAA-CA-A-----A-----A---------------T-------GG----GTTTTGTTACACTT------------A----G-------G---AC---------CG----CAACGTA-ACTCTTA--GTGTAAC--A------ACA----------------------------------CTTGTTACACTAAGCGTATG--TTTG-GCACA------TGTA--TAGACAT-TTGATAATAA----cacttgttacactaagcgtatgtttggcacatgtatagacatttgataataaaacgggttctctaagtaaaaccttttttaactagaaatttatttatccctgctatgaaatg
gi|13 : ggtaactcttagtgaaacaaaaccccttaggttCAGGGATAAATAAATTTCTA--------GTTAAA--AAAGGTTTTAC--T-TAG-A---G-AACCCGTTTTATTAT---CA-A-----ATGTCTA---------------T-------AC----A------------TGTGCCA------A----A-------C---AT-----------------------ACGCTTA--GTGTAAC-----------AA-----------------GTGT--------------TGTTACACTAAGAGT-T---ACGaacgggttctctaagtaaaaccttttttaactagaaatttatttatccctgctatgaaatg
gi|14 : ggtaactcttagtgaaacaaaaccccttaggttttttcgttacacttagggttacggttgcgatccttagtgtaacaaaatgggttttgttacacttaggaccgcaaCATTGACCTTGACTTGAAAA-TCGTGAAACGCCTCCGCATCTGTAGTATC-------------ATCTGTGT-A------ACTTGCATCGGA--CG---GAAAATAATGCCGGT-AAGCATTGACAGCGATTTTCTA-TT-T-TAA-GTATCAGTGATATTGACCTTGACCTGCAAATCGTAACGTACGGA-------------AAAATGG-A-------------CAGACAAACGTATGGG------------CG---------AACGGTAC-G--ACAGACGGAC----AGGTGTAGCACTATATT--TC---C----C------------------ctatgaaatg
gi|15 : C---TTAGTGTAA-CA-ATTAC-A-----T---------------T-------AA----GGAT---------T------------G----A-------C---AC---------CG----C-----A-ACCTTCA--GTGTAAC--A------Acat
gi|15 : t-CTGAAT------CT-GTTGTATAAT-CAAATGTC--AATACATGTAT---C-AAA-CATAT-GC---TTAGTGTAACAA-------------TTACATTAAG------GA-TTGACACCG------CAAC----CTTCAGTGTAcatatgtttgatacatgtattgacatttgattatacaacagattcagttagggttataatgtttgttcaactagaaatttatcctgctatggaatggggacatatggtgt
gi|16 : tttgt------GA-T-------GT-----CAAC----CCTTAGTGTAttagggttataatgtttgttcaactagaaatttatcctgctatggaatggggacatatggtgt
gi|16 : atgcATGTCAACCCTTAGTGTAACA----------TTTGTTACAacatttgttacatgtattggcatttgattataaaacaggttcatttagtgtaacaattttttttttttaaacttagaaatttatttatccct
gi|16 : atgcgTGTTACACTAAGGGT-TG--ACtgtattggcatttgattataaaacaggttcatttagtgtaacaattttttttttttaaacttagaaatttatttatccct
gi|18 : atgcgatGAAATTCTTATTCCAGGGAAAGGAATATTTT----------GTTACACCAAGGGTT--AT--T-TAT-A-CCGCAAtttgttacatgtattggcatttgattataaaacaggttcatttagtgtaacaattttttttttttaaacttagaaatttatttatccct
gi|2 : aGAACATCGTACTTCTTTGATAAATATATTTTT---------GTTACACTAAGGATT--AT--T-TNN-N-NNNNNNNNN---NNNNNNNNN-NN-N-----N-----N---------------N-------NN----N------------N------------N----N-------N---NN---------NN----N-----N-NNNNNNN--NNNNNNNAAG------ACAATCTTATTTCTTTGATAAATATAG------T---TTTGTTACACTAAGGGT-T
gi|20 : tagagtaatgctatattagtaatagcatcatcttgagttataattgtcagaaaaggaatacttatgttgcatggggaaggggggtcgagattcagggagaaaagggtcaataacaagttcatcaaaattagaataatgcataaatactttcatttgtcactcattaatagttgtatcctgtttctcagatgttcaactcttgaaagtgacatagcgcgctctagttttattttggttttaaaactgcttcattttgtcaccatcgttataaaagcattcatctaaaagtaggctgacatcgcaatatatcataaaatgtgttttatcttggacatttgtagttatggaacattactaatacaattatcttagtgaaaataaataacattaacgaagagtaagtagactcatatcatctcaaactcttgtttaaaaaacgtaaataaacaaacttatataaaattacgaatctcctttaaatcttcggttttccacttcattattttaagttatttaccagtgttaagaaaaccgtccaacaaagtttttctaagggttgtttnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaaCGGC-------------A-----G-A-------------CAGAC--------GGA------------CG---------GACGA-ACGG--ACGGACGGAC----AGTGATAACATTGTa
gi|3 : GTAA--ATGACGTTGACCTTGACCCGAAAA-TCGTGAAACACAAACGCATCTGAAGTCTCACTG-TTCTGAACATCTGTGT-A------TCTTACATTGGA--GG---GGAAATAATACTGGT-AAGCGTTGACAGCGATT---TA-TC-T-T--------AGTGACATTGACCTTAACCTGAAAATCGTGATGTACGGA-------------A-----GAA-------------CGGAC--------GGACAGACGGATAGGCG---------AACGGTAC-G--ACGGACGGAC----ATGGGTAGCACTATA-C--TC---C----C------------------T-CACCAC--CA------CACC------CA----A----TG--GC--AATTT---CA----AGGCTGT--T---------GCATA-----A------------------ACA-A--T-AT-GTA----TCAGTA-TTA------AACATATAA--ATTGT-ATAAAT------TGTG-TA-AT-TTGCCA----T--AATA----TGT---tcat
gi|3 : atttattgccgcaacc------------------T-TA--AA--CA------TA-T------AA----A----TT--GT--A---T---AA----A-----T--T---------GTGTA-----AT------------TTGCCATA-A--T-AT-GTA----GGGATG-TTA------TAGAGAAGATGATTAC-CTAAAT------TTTGTTACATATTGCAA----C--AATA----TGT---C-A---CATATGGACCCTTAGTGTAACAA-AAT--AT-----TTACACTAAGGGTTGCGG-T-------GT-----CAAC----CCCTGGTGTAagggatgttatagagaagatgattacctaaattttgttacatattgcaacaatatgtcacatatggacccttagtgtaacaaaatatttacactaagggttgcggtgtcaacccctggtgtaacagaaactgattgacaccgcaacccttagtgtaacagttgttacaattgttactgtttcactaagggttgcaacagacgtggcaaccagtacttacaagaatttaaacaatcatatattctaaacgtagacaatgtatcgtgaatgctatacagtatagatataagaacttgtaacttgtaagtcgaaataaacttctgtattt
gi|3 : atttattgccgcaaccgtaaatgacgttgaccttgacccgaaaatcgtgaaacacaaacgcatctgaagtctcactgttctgaacatctgtgtatcttacattggaggggaaataatactggtaagcgttgacagcgatttatcttagtgacattgaccttaacctgaaaatcgtgatgtacggaagaacggacggacagacggataggcgaacggtacgacggacggacatgggtagcactatactccctcaccaccacacccaatggcaatttcaaggctgttgcataaacaatatgtatcagtaT---------GTTACACTAAGGGTT--GC--GGTGT------CAATCAG--TTTCTGTTA-CA-C-----C-----A---------------G-------GG----G------------TT-----------G----A-------C---AC---------CG----C-----A-ACCCTTA--GTGT--------------AA-----------------ATA---------T---TTTGTTACACTAAGGGT-acagaaactgattgacaccgcaacccttagtgtaacagttgttacaattgttactgtttcactaagggttgcaacagacgtggcaaccagtacttacaagaatttaaacaatcatatattctaaacgtagacaatgtatcgtgaatgctatacagtatagatataagaacttgtaacttgtaagtcgaaataaacttctgtattt
gi|3 : atttattgccgcaaccgtaaatgacgttgaccttgacccgaaaatcgtgaaacacaaacgcatctgaagtctcactgttctgaacatctgtgtatcttacattggaggggaaataatactggtaagcgttgacagcgatttatcttagtgacattgaccttaacctgaaaatcgtgatgtacggaagaacggacggacagacggataggcgaacggtacgacggacggacatgggtagcactatactccctcaccaccacacccaatggcaatttcaaggctgttgcataaacaatatgtatcagtattaaacatataaattgtataaattgtgtaatttgccataatatgtagggatgttatagagaagatgattacctaaattttgttacatattgcaacaatatgtcacatatggTTACACTAAGGGTT--GC--GGTGT------CAACCC---CTGGTGTAA-CA-G-----A-----AAC-------------T-------GA----T------------T------------G----A-------C---AC---------CG----C-----A-ACCCTTA--GTGTAAC--AGTTGTTAC-A-----------------AT-TGT------T---ACTGTTTCACTAAGGGT-TG---CAACAGACG-----TGGCAACCAGT-AC-TTACAAG-AA----TTTA--AAC--AATCATATATTCTAAACGTAGACAATGTA-TCG-TGAATGCTATACAGTATAGATATAAGAACTTGTAACTTGTAAGTgttgttacaattgttactgtttcactaagggttgcaacagacgtggcaaccagtacttacaagaatttaaacaatcatatattctaaacgtagacaatgtatcgtgaatgctatacagtatagatataagaacttgtaacttgtaagtcgaaataaacttctgtattt
gi|4 : atttattgccgcaaccgtaaatgacgttgaccttgacccgaaaatcgtgaaacacaaacgcatctgaagtctcactgttctgaacatctgtgtatcttacattggaggggaaataatactggtaagcgttgacagcgatttatcttagtgacattgaccttaacctgaaaatcgtgatgtacggaagaacggacggacagacggataggcgaacggtacgacggacggacatgggtagcactatactccctcaccaccacacccaatggcaatttcaaggctgttgcataaacaatatgtatcagtattaaacatataaattgtataaattgtgtaatttgccataatatgtagggatgttatagagaagatgattacctaaattttgttacatattgcaacaatatgtcacatatggacccttagtgtaacaaaatatAGAAAGAGAAAAATATCGAAACGACATGAATACCCCCTCCCTC---TATCTTTCTATTTTTTGCAAAcgaaataaacttctgtattt
gi|4 : TTTCTATTTTTTGCAAAGGTGAT------CTTGACTCAAGAA-TCCATAAGCGCAAACTCGTCCGAAGTATAT-TGTTTCTGAACACGTGTATGA------AGTTTCATCAAAATTGTATTAAAATAAGGTCGGTCGAGCGGTTACTGTGCTTTTCTG-CTAT-A-A-GTAACGATGAC--TGACTTTGACCAGAAAGTCGTGAggtgatcttgactcaagaatccataagcgcaaactcgtccgaagtatattgtttctgaacacgtgtatgaagtttcatcaaaattgtattaaaataaggtcggtcgagcggttactgtgcttttctgctataagtaacgatgactgactttgaccagaaagtcgtgaaacgctaacgtattcaaagtatctctgttctgaacatctgtaacttgcatgggatggaaaataatgccggtaaacgttgaaatcgattttctattttgagtaactgtgacgttgaccttgacctgaaaatcgttacgtacggaaggacggatggacgatacgcaaaagacggacatgggtagcactatatcccattcaccaccttaccccaacccccatgtcaagccggttgcataaataatacgtatcggtattaaacagatgaattgtataaattgtgtaatttgtcataatatgtagagataatatagagaagatgatttccttgattttgttacatatttcaacaatatgtcacatatcgcccttaagtgtaacaaaatatttttgttacactaacagttgcggtgacaagggagactttgttagtaaacgttttattaaatg
gi|4 : agaaagagaaaaatatcgaaacgacatgaataccccctccctctatcCGCAAACTC-GTCCGAAGTATATTGTTTCTGAACACGTGTATGAAGTTTCATCAAAATTGTATTAAAATAAGGTCGGTCGAGCGGTTACTGTGCTTTTCTGCTATAAGTAACGATGAC--TGACTTTGACCAGAAAG-TCGTGAAACGCTAACGTATTCAAAGTATCTCTG-TTCTGAACATC--TGT-A------ACTTGCATGGGA--TG---GAAAATAATGCCGGT-AAACGTTGAAATCGATTTTCTA-TT-T-TGA-GTAACTGTGACGTTGACCTTGACCTGAAAATCGTTACGTACGGA-------------A----------------------GGAC--------GGA------------TG---------GACGATAC-GCAAAAGACGGAC----ATGGGTAGCACTATATC--CC---A----T------------------T-C---AC--CA------CC-TTACCCCAA----C----CC--CC--A---TGTCAAGCCGG-----T--T---------GCATA-----A------------------ATA-A--T-AC-GTA----TCGGTA-TTA------AACAGATGA--ATTGT-ATAAAT------TGTG-TA-AT-TTGTCA----T--AATA----TGT---aacgctaacgtattcaaagtatctctgttctgaacatctgtaacttgcatgggatggaaaataatgccggtaaacgttgaaatcgattttctattttgagtaactgtgacgttgaccttgacctgaaaatcgttacgtacggaaggacggatggacgatacgcaaaagacggacatgggtagcactatatcccattcaccaccttaccccaacccccatgtcaagccggttgcataaataatacgtatcggtattaaacagatgaattgtataaattgtgtaatttgtcataatatgtagagataatatagagaagatgatttccttgattttgttacatatttcaacaatatgtcacatatcgcccttaagtgtaacaaaatatttttgttacactaacagttgcggtgacaagggagactttgttagtaaacgttttattaaatg
gi|4 : agaaagagaaaaatatcgaaacgacatgaataccccctccctctatctttctattttttgcaaaggtgatcttgactcaagaatccataag------------------T-TA--AA--CA------GA-T------GA----A----TT--GT--A---T---AA----A-----T--T---------GTGTA-----AT------------TTGTCATA-A--T-AT-GTA----GAGATA-ATA------TAGAGAAGATGATTTC-CTTGAT------TTTGTTACATATTTCAA----C--AATA----TGT---C-A---CATATCGCCCTTAAGTGTAACAA-AAT--ATTTTTGTTACACTAAagagataatatagagaagatgatttccttgattttgttacatatttcaacaatatgtcacatatcgcccttaagtgtaacaaaatatttttgttacactaacagttgcggtgacaagggagactttgttagtaaacgttttattaaatg
gi|4 : agaaagagaaaaatatcgaaacgacatgaataccccctccctctatctttctattttttgcaaaggtgatcttgactcaagaatccataagcgcaaactcgtccgaagtatattgtttctgaacacgtgtatgaagtttcatcaaaattgtattaaaataaggtcggtcgagcggttactgtgcttttctgctataagtaacgatgactgactttgaccagaaagtcgtgaaacgctaacgtattcaaagtatctctgttctgaacatctgtaacttgcatgggatggaaaataatgccggtaaacgttgaaatcgattttctattttgagtaactgtgacgttgaccttgacctgaaaatcgttacgtacggaaggacggatggacgatacgcaaaagacggacatgggtagcactatatcccattcaccaccttaccccaacccccatgtcaagccggttgcataaataatacgtatcggta-CA-AC----A-----A---------------T-------AT----G------------T------------C----A-------C---ATAT-------CG----C---------CCTTAA-GTGTAAC-----------AA-----------------A-ATAT------T---TTTGTTACACTAACAGT-TG---CGG-TGAC-A---AGGG-----AGAC-T-TTGTTAGTAAACGTTTTATTAAcagttgcggtgacaagggagactttgttagtaaacgttttattaaatg
gi|5 : agaaagagaaaaatatcgaaacgacatgaataccccctccctctatctttctattttttgcaaaggtgatcttgactcaagaatccataagcgcaaactcgtccgaagtatattgtttctgaacacgtgtatgaagtttcatcaaaattgtattaaaataaggtcggtcgagcggttactgtgcttttctgctataagtaacgatgactgactttgaccagaaagtcgtgaaacgctaacgtattcaaagtatctctgttctgaacatctgtaacttgcatgggatggaaaataatgccggtaaacgttgaaatcgattttctattttgagtaactgtgacgttgaccttgacctgaaaatcgttacgtacggaaggacggatggacgatacgcaaaagacggacatgggtagcactatatcccattcaccaccttaccccaacccccatgtcaagccggttgcataaataatacgtatcggtattaaacagatgaattgtataaattgtgtaatttgtcataatatgtagagataatatagagaagatgatttccttgattttgttacatattt------ATTTGCATCGGA--TG---CAAAGTAATACCCGT-AAGCGTTGACACCGATTTTCTA-----------------TGACATTGACCTTGTCCT-AAAATCGTGACGTACAGA-------------A-----G-AACGGG--------CGGAC--------AGA------------CGGATAGGCAAGACGGTAT-G--ACGGACGGAC----ATGGGTAGCAATATATC--CT---CACCAC------------------TGCA--AC--C-------CA-TTTC---AA----AGCGGTT--GC--A---C----G----G-----T--T---------GCGTA-----A------------------ACA-A--T-AT-ATA----atg
gi|5 : --A---T---AA----A-----T--T---------GTGTA-----AT------------TTGCCATA-C--T-AT-GTA----GGGATA-TTA------TAGAAAAGATAATTTC-CTAAAT------TGTGTTACATATTGCAA----C--AATA----TGT---C-G---CATATCGCCCCTTGGTGTAACAA-AAT--ATTTTTGTTACACTTAG------GG-T-------tcagaattaaacagataaattgtgtaatttgccatactatgtagggatattatagaaaagataatttcctaaattgtgttacatattgcaacaatatgtcgcatatcgccccttggtgtaacaaaatatttttgttacacttagggttgcggtgtaacataaactaattgtgttacactaagggttgcggtgtaacataaactaattttgttacactaagggttgcggaatcaacccttagtgtaacaattgtt
gi|5 : atttgcatcggatgcaaagtaatacccgtaagcgttgacaccgattttctatgacattgaccttgtcctaaaatcgtgacgtacagaagaacgggcggacagacggataggcaagacggtatgacggacggacatgggtagcaatatatcctcaccactgcaacccatttcaaagcggttgcacggttgcgtaaacaatatatatcagaattaaacagTT--ATG-T-TAC-A-CCGCAACCC---TTAGTGTAA-CA-C-----A-----A---------------T-------TA----GTT----------T------------ATGTTA-------C---AC---------CG----C-----A-ACCCTAA--GTGTAAC--A------A-AA-----------------ATA---------T---TTTGTTACACCAAGG----G--GCGATATGCGACATATTGTtgcggtgtaacataaactaattgtgttacactaagggttgcggtgtaacataaactaattttgttacactaagggttgcggaatcaacccttagtgtaacaattgtt
gi|5 : atttgcatcggatgcaaagtaatacccgtaagcgttgacaccgattttctatgacattgaccttgtcctaaaatcgtgacgtacagaagaacgggcggacagacggataggcaagacggtatgacggacggacatgggtagcaatatatcctcaccactgcaacccatttcaaagcggttgcacggttgcgtaaacaatatatatcagaattaaacagataaattgtgtaatttgccatactatgtagggatattatagaaaagataatttcctaaattgtgttacatattgcaATATTTTT---------GTTACACTTAGGGTT--G------------CG------------GTGTAA-CATA-----A-----AC--------------T-------AATTGTG------------T------------T----A-------C---AC---------T-----------A-AGGGTTGCGGTGTAAC---------ATAA-----------------AC-TAA------T---TTTGTTACACTAAGGGT-TG--CGGA-ATactaattttgttacactaagggttgcggaatcaacccttagtgtaacaattgtt
gi|5 : atttgcatcggatgcaaagtaatacccgtaagcgttgacaccgattttctatgacattgaccttgtcctaaaatcgtgacgtacagaagaacgggcggacagacggataggcaagacggtatgacggacggacatgggtagcaatatatcctcaccactgcaacccatttcaaagcggttgcacggttgcgtaaacaatatatatcagaattaaacagataaattgtgtaatttgccatactatgtagggatattatagaaaagataatttcctaaattgtgttacatattgcaacaatatgtcgcatatcgccccttggtgtaacaaaTT---------GTTACACTAAGGGTTG-AT--T-------CCGCAACCC---TTAGTGTAA-CA-A-----A-----A---------------T-------TA----GTT----------T------------ATGTTA-------C---AC---------CG----C-----A-ACCCTTA--GTGTAAC---------ACAA-----------------TTA-GT------T---TATGTTACACcaacccttagtgtaacaattgtt
gi|6 : atttgcatcggatgcaaagtaatacccgtaagcgttgacaccgattttctatgacattgaccttgtcctaaaatcgtgacgtacagaagaacgggcggacagacggataggcaagacggtatgacggacggacatgggtagcaatatatcctcaccactgcaacccatttcaaagcggttgcacggttgcgtaaacaatatatatcagaattaaacagataaattgtgtaatttgccatactatgtagggatattatagaaaagataatttcctaaattgtgttacatattgcaacaatatgtcgcatatcgccccttggtgtaacaaaatatttttgttacacttagggttgcgCTCTTAGTGTAACAC-AATCAGTTTTTGTTACATTAAG------GGTT-------GTCATCGCAAT----CCTTAGTGTttgtt
gi|6 : AT-A-TTGC--CCC---TTAGTGTAA-CA-A-----A-----A---------------T-------GTTTTTG------------T------------A----A-------C---ACTAAGGATTGCGATGAC-----A-ACCCTTA--ATGTAAC--A------A-AA-----------------AC-TGA------T---TGTGTTACACTAAGAGtacaaaaacattttgttacactaaggggcaatatgtgacatattgttgcaatttgtaataaaatttagaaaatcgtcttctctataatatccctacatattatggcaaattacaaatgtatctgtttaatactgatacgtattgttaatgcaactgccttgaaatgggggtggcatggggagggttggtgaggggctaatatagtgctacccatgtccatctgttgtaccatccgtccatccgtctgtccacccgttgttctgtacataacaatttcagttacggtcagtatcactgctactataaatagaaaatccctgtcaacgtttacaagtattattttgcatcggata
gi|6 : CTC---TTAGTGTAA-CA-C-----A-----A---------------T-------CA----G------------TTTTTGTTACATTA----AGGGTTGTC---AT---------CG----C-----A-ATCCTTA--GTGTTAC--A------A-AA-----------------ACAT------------TTTGTTACACTAAGG----G--GC-A-ATA--------TGT-----GACATATTGTT-GCAA----TTTG-TAATAAAATgtgacatattgttgcaatttgtaataaaatttagaaaatcgtcttctctataatatccctacatattatggcaaattacaaatgtatctgtttaatactgatacgtattgttaatgcaactgccttgaaatgggggtggcatggggagggttggtgaggggctaatatagtgctacccatgtccatctgttgtaccatccgtccatccgtctgtccacccgttgttctgtacataacaatttcagttacggtcagtatcactgctactataaatagaaaatccctgtcaacgtttacaagtattattttgcatcggata
gi|6 : --A---T---AC----A-----T--T----------TGTA-----AT------------TTGCCATA-A--T-AT-GTA----GGGATA-TTA------TAGAGAAGACGATTTT-CTAAAT------TTTATTACAAATTGCAA----C--AATA----TGT---C-A---CATATTGCCCCTTAGTGTAACAA-AAT--GTTTTTGTAACACTAAGGATTGCGA-T-------GA-----CAAC----CCTTAATGTAttagaaaatcgtcttctctataatatccctacatattatggcaaattacaaatgtatctgtttaatactgatacgtattgttaatgcaactgccttgaaatgggggtggcatggggagggttggtgaggggctaatatagtgctacccatgtccatctgttgtaccatccgtccatccgtctgtccacccgttgttctgtacataacaatttcagttacggtcagtatcactgctactataaatagaaaatccctgtcaacgtttacaagtattattttgcatcggata
gi|6 : ctcttagtgtaacacaatcagtttttgtATCCGA--TG---CAAAATAATACTTGT-AAACGTTGACAGGGATTTTCTA-TT-TAT-A-GTAGCAGTGATACTGACCGTAA-CTG-AAATTGTTATGTACAGAACAACGGGTGGACA-----G-A-------------CGGAT--------GGA------------CG---------GATGGTAC-A--ACAGATGGAC----ATGGGTAGCACTATATTAGCC---C----C------------------T-C---AC--CA------ctgtttaatactgatacgtattgttaatgcaactgccttgaaatgggggtggcatggggagggttggtgaggggctaatatagtgctacccatgtccatctgttgtaccatccgtccatccgtctgtccacccgttgttctgtacataacaatttcagttacggtcagtatcactgctactataaatagaaaatccctgtcaacgtttacaagtattattttgcatcggata
gi|7 : ctcttagtgtaacacaatcagtttttgttacattaagggttgtcatcgcaatccttagtgttacaaaaacattttgttacactaaggggcaatatgtgacatattgttgcaatttgtaataaaatttagaaaatcgtcttctctataatatccctacatattatggcaaattacaaatgtatctgtttaatactgatacgtattgttaatgcaactgccttgaaatgggggtggcatggggagggtTGAAGATCTGTTT-A------ACTTGCATCGGA--TG---CAAAATAATGCCGGT-AAGCGTTGACAGCGATTTTCTATTT-T-T-A-TCAACAATGGCATTAACCTTAACCTT-AAATCGTGACGTACGGA-------------A-----G-AAGGGGCGGACACTCGGAT--------AGA------------CG---------AACAGTAC-G--ACGGACGGAC----TTAGGTAGCATTATACC--CCCAAC----C------------------C-CA--CC--CAGCCCTTCT-C------AA----GC---TT--GC--A---T---AA----A-----CAAT---------ACGTATCAGTATTAAACAGATAAGTTG-TATA-AACT-GT-GTAATTTGCCATA-ATATG----TAGAAAAGGTGATTAC-CTAAGT------TTTGTTATATATTGCAA----C--AATA----TGT---C-T---CATATCGCACCTTAATGTAACAC-AAT--ATTTTTTTTACATTAAG------GG-T--------T-----TAAT----GCTTa
gi|8 : TAACGGTT--AT--T-TAT-AACCACAACCC---TTAGTGTAA-CA-A-----A-----AA--------------T-------AA----G------------TTT----------A----A-----------------------G----A-----A-AATCTTA--TTGTGAT--G------ATAA-----------------ATATAT------T---TTTGTCACACTAAGGGT-TG--ACGA-ATATGA---ATTGTA--TAGTCAT-TCATTAATAA----TTTGTTAACAA-----CAGA--CCTAATGTTTACA---TACTTGTTGGCCCTTATAC-TTAA--------------------TGAAAGTTAATATGGTATAAATAATACAA-CCAACACGAAATGTAACACACACACCATATAAACATATTCCTA------TATTTAATCTAAGCAATTGTACAGTACAATTTCTTGATTTCATCAGAGATATAAAATACTATTATCTGTC-------TCATACATGTTCCTACCTAGTATATGAACAAAAGAACAGTTC-AACGTGTTACCTGTTCCCTTTTTAGCTtcactggaaatagttattgatactgtt
gi|9 : G---------GACAGTAC-G--ACGGACGGACGGAGATGGGTAGCACTATATC--CCAT-C----CCATTTTAAGACGGTGGTTT-AA--ACAACA------CG-T------AACAACA----TTAAACAAA---T---AA----A-----T--TGTATAAATTGTGTA-----AT------------TTGCTATA-A--T-AT-ATA----GAGATA-TCA------TAGAGAAGTTGAGTTC-TGAAAT------TTTGTTACATATTGCCA----CTTAGTT----TAA---CAA---AATAT-G----TT--TTTAACAA-AAT--ATGTTTGTTAAACTAAG------GG-TTGCA---GTTA---TAAC----CCCTAGTGT
gi|9 : ATATGTTT---------GTTAAACTAAGGGTTGCAG--T-TAT-------AACCC---CTAGTGTTA-CA-A-----AT----A---------------T--------------------------T------------G----A-------T---TT---------TG-----------------TA--GGGTAAC--A------A----------------------ATAT------TGAGTTTGTTACACTAAGGGA-TG--tacaaatattgattttgtagggtaacaaatattgagtttgttacactaagggatgttgttacattaaagccacaaagcatttacacacttgatatagtata
gi|9 : ggacagtacgacggacggacggagatgggtagcactatatcccatcccattttaagacggtggtttaaacaacacgtaacaacattaaacaaataaattgtataaattgtgtaatttgctataatatatagagatatcatagagaagttgagttctgaaattttgttacatattgccacttagtttaacaaaatatgtttttaacaaaA----TGT---A-A---CA-A-CATCCCTTAGTGTAACAA-ACTCAATATTTGTTACCCTAttgttacattaaagccacaaagcatttacacacttgatatagtata
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|17 ): AAAATGCTATGGTTAAAAAAAGCGGATTTTATAAAAATGATTTTTTGTCGGATTATCATGCGCGATAATAGCTATGTATGATTTGAGG
Unaligned ( gi|19 ): ACTAAAACGATCAATAGTAAAATTCATCAGATTGTTAAACAAGTATTAATGAAACA
Alignments
lowQualScore : 111111111 4444444444444444 8888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888 1111111 3333333333333 1 1111 1111 11 11 222 4444444444444444444 1 1 1 1 222222 3333333 11 1 222222 222 33 1 11 11 111111 11111 66666666666666666666666666666666666 11111111 22222222222222222222222 66666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666 22222222222222222222222 111111 111111 1111 111 333333333333333333333 1111
lowQualScore : 555555555 4444444444444444 0 666 2 2 4444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444 2 2222222 9999999999999 1 1 2 5555 2 2222 44 0 0 3 88 333 6 0 7 7 3333333333333333333 1 1 5 5 5 5 1 1 999999 1 1 2222222 66 1 5 1 888888 1 1 111 1 1 1 00 1 1 1 1 1 1 1 1 1 2 77 8 1 11 8 6 666666 66 9999 5 5 5 77777 2 6 88888888888888888888888888888888888 88888888 77777777777777777777777 4 66 9999 66 55555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555 44444444444444444444444 3 55 3 3 7777 0 4 777777 2 1 3 000000 3 5555 55 7777 555 4 222 5 44 3 88888 1 777777777777777777777 0000
lowQualScore : ......... ................ . ... . . ................................................................................................................................................................ . ....... ............. . . . .... . .... .. . . . .. ... . . . . ................... . . . . . . . . ...... . . ....... .. . . . ...... . . ... . . . .. . . . . . . . . . . .. . . .. . . ...... .. .... . . . ..... . . ................................... ........ ....................... . .. .... .. ........................................................................................................... ....................... . .. . . .... . . ...... . . . ...... . .... .. .... ... . ... . .. . ..... . ..................... ....
lowQualScore : 444444444 6666666666666666 1 111 2 2 8888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888 5 3333333 2222222222222 0 4 7 0000 3 1111 00 8 8 7 33 333 7 7 3 3 3333333333333333333 0 0 5 0 0 0 0 0 000000 0 0 5555555 55 0 5 0 555555 0 0 000 0 0 0 55 0 0 0 0 0 0 0 0 0 8 00 0 0 00 0 7 444444 99 8888 0 0 0 44444 1 2 22222222222222222222222222222222222 11111111 22222222222222222222222 4 11 4444 99 55555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555 66666666666666666666666 6 00 6 6 7777 7 0 000000 3 0 6 555555 5 5555 00 1111 888 0 555 1 22 6 11111 4 000000000000000000000 6666
consensus : GAAAATCGTATTCCAGGGATAAGTATATTTTT---------GTTACACTAAGGGTT--AT--T-TAT-A-CCGCAACCC---TTAGTGTAA-CA-A-----A-----A---------------T-------AA----G------------T------------A----A-------C---AC--CGC-----A-ACCCTTA--GTGTAAC--G------ACAA-----------------ATATAT------T---TTTGTTACACTAAGGGT-TG--ACGA-ATACGA---ATTGTATAGACAT-TCGTT---AGTAA----TTTAT-TAACAAAATCACAGA--CCAAACGTTTACA---TACTCGTTGGACCTTATACATTAAAGATGTAAGAA--TGTA--TTGAAAGTTAATNTGGCATAAATNATACAAGCCAACACGAAATGTAACACGCACACCNTATAANCATATTCCTAGTCCTATATTTNATCTAAGCAATTGTACAGTACAANTTCTTGATTTCACCAGAGATATAAAATACTATTATCTGTCTCTCATTTCATACATGTTCCTACCTAGTATATGANCGAAAGNACAGTTCAAANGTGTTACCTGTTCCCTTTNTAGCTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGAGAGAGAAAAATATCGAAACGACATGAATGCCCCCCNCCCCACACATCTTNCNATTNTTCGCAAACTCTGTCCGAGGTATNTTGNTTCTGAACACNTGCATGAAGTTTCATCAAAATTGNATTAAAANAAGGNCGGTCGAGCGGTNGCNGTGNTTTTCTGCTTTTAGTAACGATGACGTTGACCTTGACCCGAAAA-TCGTGAAACGCAAACGCATCCGAAGTATCTCTG-TTCTGAACATCTGTGT-A------ACTTGCATCGGA--TG---NAAAATAATGCCGGT-AAGCGTTGACAGCGATTTTCTA-TT-T-T-A-GTAACAGTGACATTGACCTTGACCTGAAAATCGTGACGTACGGA-------------A-----G-A-------------CGGAC--------GGA------------CG---------GACGGTAC-G--ACGGACGGAC----ATGGGTAGCACTATATC--CC---C----C------------------T-CA--AC--CA------CA-T------AA----A----TT--GC--A---T---AA----A-----T--T---------GCGTA-----AT------------TTGCCATA-A--T-AT-GTA----GGGATA-TTA------TAGAGAAGATGATTNC-CTAAAT------TTTGTTACATATTGCAA----C--AATA----TGT---C-A---CATATCGCCCCTTAGTGTAACAA-AAT--ATTTTTGTTACACTAAG------GG-T-------GT--CAAC----CCTTAGTGTA
Reference ( family-3843 ) : GAAAATCGTATTCCAGGGATAAGTATATTTTT---------GTTACACTAAGGGTT--AT--T-TAT-A-CCGCAACCC---TTAGTGTAA-CA-A-----A-----A---------------T-------AA----G------------T------------A----A-------C---AC--CGC-----A-ACCCTTA--GTGTAAC--G------ACAA-----------------ATATAT------T---TTTGTTACACTAAGGGT-TG--ACGA-ATACGA---ATTGTATAGNCAT-TCGTT---AGTAA----TTTAT-TAACAAAATCACAGA--CCAAACGTTTACA---TACTCGTTGGACCTTATACATTAAAGATGTAAGAA--TGTA--TTGAAAGTTAATNTGGCATAAATNATACAAGCCAACACGAAATGTAACACGCACACCNTATAANCATATTCCTAGTCCTATATTTNATCTAAGCAATTGTACAGTACAANTTCTTGATTTCACCAGAGATATAAAATACTATTATCTGTCTCTCATTTCATACATGTTCCTACCTAGTATATGANCGAAAGNACAGTTCAAANGTGTTACCTGTTCCCTTTNTAGCTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGAGAGAGAAAAATATCGAAACGACATGAATGCCCCCCNCCCCACACATCTTNCNATTNTTCGCAAACTCTGTCCGAGGTATNTTGNTTCTGAACACNTGCATGAAGTTTCATCAAAATTGNATTAAAANAAGGNCGGTCGAGCGGTNGCNGTGNTTTTCTGCTTTTAGTAACGATGACGTTGACCTTGACCCGAAAA-TCGTGAAACGCAAACGCATCCGAAGTATCTCTG-TTCTGAACATCTGTGT-A------ACTTGCATCGGA--TG---NAAAATAATGCCGGT-AAGCGTTGACAGCGATTTTCTA-TT-T-T-A-GTAACAGTGACATTGACCTTGACCTGAAAATCGTGACGTACGGA-------------A-----G-A-------------CGGAC--------GGA------------CG---------GACGGTAC-G--ACGGACGGAC----ATGGGTAGCACTATATC--CC---C----C------------------T-CA--AC--CA------CA-T------AA----A----TT--GC--A---T---AA----A-----T--T---------GCGTA-----AT------------TTGCCATA-A--T-AT-GTA----GGGATA-TTA------TAGAGAAGATGATTNC-CTAAAT------TTTGTTACATATTGCAA----C--AATA----TGT---C-A---CATATCGCCCCTTAGTGTAACAA-AAT--ATTTTTGTTACACTAAG------GG-T-------GT--CAAC----CCTTAGTGTA
gi|1 : GAGAATCTTATTCCAGGGATAGGTATATCTTT---------GTTACACTAAGGGTT--AT--T-TAT-AACTGCAACCC---TTAGTGTAA-CA-A-----A-----A---------------T-------AA----G------------T------------A----A-------C---AC--AAT-----A-AGTTTTG--ATAAGAC--G------ATAA-----------------GTATAT------T---TTTGTTACACTAAGGGT-AG--ACGA-ATATGA---ATTGTATAGTCAT-TCATT---AGTAA----TTTAT-TTACAAAATTACAGA--CCAAACGTTTACA---TACTTGTTGGACCTTATGTATTAAAAATGTAAAAA--TGTA--TTAAAAATTAATTTGACATAAATTAT-CAAGCCAACACAAAAT-TAA-ATGTACACTTTATAATCATATTCCTAGTCCTATATTTTATCTAAGCAATTGTACAGTACAAGTTCTTGATTTCACCAGAGATATAAAATACTATTATCTGTCTCTCATTTCATACATGTTCCTACCTAGTATATG-TCGAAAATACAGTTCAAAAGTGTTACTT------TTTGTAGCT
gi|1 : AAAGAGAGAAAAATATCAAAACGACATGAATGTCCCCCACCCCACACATCTTACAATTGTTCGCAAACT-TGTCCGAGGTATCTTGGTTCTGAACACCTACATGAAGTTTCATCAAAATTGGATTAAAAGAAGGGCAGTCAAGCGGTAGCGGTGATTTTCTGCTTTTAGTAATGATGACATTGACCTTGACCCGAAAAATCGTGAAATGCAAACGCATCCGAATTATCTCTG-TTCTGAACATCTGTGT-ATTTGTTACTTGCATCTGA--TG---GGAAATAATGCCGGT-AATTGTTGACAGCAATTTTCTA-TT-T-T-ATGTAACAGTGACATTGACCTTGACCTGAAAATCGTGATTTACGAA-------------A-----A-A-------------CAGAA--------GGA------------CA---------GACGGCAC-G--ACAGACGGAC----ATGGGTAGCACTATATC--TC---C----C------------------T-CA--AC--CA------TA-T------AA----A----TT--GT--A---T---AA----A-----T--T---------GTGAA-----AT------------TTGCCATA-A--TAAT-GCA----GGGATA-TTA------TAGAGAAGATGATTAA-CTAAAT------TTTGTTGCATATTGCAA----C--AATA----TGT---C-A---CAAATAGCCCTTTAGTGAAACAA-AAC--ATTTTTGTTACACTAAG------GG-T-------GT--CAAC----CCTTAGTGTAacaatttagtaatacctcatgattcatgactaatccctttccaaaataaccaaaacattcactgaaataatgttttgtttgtaagacttcttacttttctttttataattatcatttttccaatcttccacagcatatttacagtcacatttgttagttaaaatatacacgaaaaaaagagagaaaaatatcaaaacgacatgaatgtcccccaccccacacatcttacaattgttcgcaaacttgtccgaggtatcttggttctgaacacctacatgaagtttcatcaaaattggattaaaagaagggcagtcaagcggtagcggtgattttctgcttttagtaatgatgacattgaccttgacccgaaaaatcgtgaaatgcaaacgcatccgaattatctctgttctgaacatctgtgtatttgttacttgcatctgatgggaaataatgccggtaattgttgacagcaattttctattttatgtaacagtgacattgaccttgacctgaaaatcgtgatttacgaaaaacagaaggacagacggcacgacagacggacatgggtagcactatatctccctcaaccatataaattgtataaattgtgaaatttgccataataatgcagggatattatagagaagatgattaactaaattttgttgcatattgcaacaatatgtcacaaatagccctttagtgaaacaaaacatttttgttacactaagggtgtcaacccttagtgtaccca
gi|10 : gagaatcttattccagggataggtatatctttgttacactaagggttatttataactgcaacccttagtgtaacaaaataagtaacacaataagttttgataagacgataagtatatttttgttacactaagggtagacgaatatgaattgtatagtcattcattagtaatttatttacaaaattacagaccaaacgtttacatacttgttggaccttatgtattaaaaatgtaaaaatgtattaaaaattaatttgacataaattatcaagccaacacaaaattaaatgtacactttataatcatattcctagtcctatattttatctaagcaattgtacagtacaagttcttgatttcaccagagatataaaatactattatctgtctctcatttcatacatgttcctacctagtatatgtcgaaaatacagttcaaaagtgttactttttgtagctacaatttagtaatacctcatgattcatgactaatccctttccaaaataaccaaaacattcactgaaataatgttttgtttgtaagacttcttacttttctttttataattatcatttttccaatcttccacagcatatttacagtcacatttgttagttaaaatatacacgaaaaACGC---TTAGTGTAA-CA-AC----A-----A---------------TTGTTTCTAA----GGGT---------T------------G----A-------C---AC--CGT-----A-ACC-TTA--GTGTATC-----------AA-----------------AAATGT------T---TTTGTTATACTAAGGGT-TGCCACAA-Accca
gi|10 : tattgtatttatattcgtcataccattgtttatagaatgttatggttataaaaaagcggattttatgccggattatcatgatcaataatagctatgtatgcA-----AT------------TT--CGTACA--T-ATAGCA----GGGATAATTAAATTTCTAAAAGAAATG-TTACACTAAATGAACCCTTT-TTATA-AT--CAAATGTC--AATA----CATGAAC-AAAACATA-CGC---TTAGTGTAACAACAAT---TGTTT------CTAAG------GGTT-------GA--CACCGTAACCTTAGTGTAatgttttgttcatgtattgacatttgattataaaaagggttcatttagtgtaacatttcttttagaaatttaattatccctgctatatgtacgaaattggagcatatagtttt
gi|10 : tattgtatttatattcgtcataccattgtttatagaatgttatggttataaaaaagcggattttatgccggattatcatgatcaataatagctatgtatgctttgtggcaacccttagtataacaaaaacatttttgaCAGGGATAATTAAATTTCTAAAAGAAATGTTACACTAA--------------AT-G-----AACCC---TTTTTATAATCA-AATGTCA-----A---------------T-------AC----A------------TG-----------A----A-------C---AA--AAC-----ATACGCTTA--GTGTAAC--A------ACAA----------------------------------TTGTT--TCTAAGGGT-TG--ACggagcatatagtttt
gi|11 : tattgtatttatattcgtcataccattgtttatagaatgttatggttataaaaaagcggattttatgccggattatcatgatcaataatagctatgtatgctttgtggcaacccttagtataacaaaaacatttttgatacactaaggttacggtGAAAATCGTGTTTCGGCGACAAGTATATGTTT---------GTTTTACTAAGGGTT--AT--T-TATAA-CCGCAAACA---TTAGTGTAA-GG-A-----A-----A---------------T-------AA----G------------T------------ctatatgtacgaaattggagcatatagtttt
gi|12 : tnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaaattacacaaattaaagcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaGAAAATCGTATTCCAAAGATAAGTATATTTTC---------GTTACACTAAGGGTT--GT--T-TACAA-CTGCAACCC---TT
gi|13 : nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaTT---------GTTACACTAAGAGTT--AC--G-T------TGCGGTCC---TAAGTGTAA-CA-A-----A-----ACCCATTTTGTTACACT-------AA----G------------G------------A----T-------CGCAAC--CGT-----A-ACCCTAA--GTGTAAC--G------AAAA-----------------A-ACCTAAGGGGT---TTTGTTTCACTAAGAGT-T
gi|13 : ggtTTTTC---------GTTACACTTAGGGTT--ACGGT-T-------GCGATCC---TTAGTGTAA-CA-A-----A-----A---------------T-------GG----GTTTTGTTACACTT------------A----G-------G---AC--CGCAACGTA-ACTCTTA--GTGTAAC--A------ACA----------------------------------CTTGTTACACTAAGCGTATG--TTTG-GCACA------TGTATAGACAT-TTGAT---AATAA----cacttgttacactaagcgtatgtttggcacatgtatagacatttgataataaaacgggttctctaagtaaaaccttttttaactagaaatttatttatccctgctatgaaatg
gi|13 : ggtaactcttagtgaaacaaaaccccttaggttCAGGGATAAATAAATTTCTA--------GTTAAA--AAAGGTTTTAC--T-TAG-A---G-AACCCGTTTTATTAT---CA-A-----ATGTCTA---------------T-------AC----A------------TGTGCCA------A----A-------C---AT------------ACGCTTA--GTGTAAC-----------AA-----------------GTGT--------------TGTTACACTAAGAGT-T---ACGaacgggttctctaagtaaaaccttttttaactagaaatttatttatccctgctatgaaatg
gi|14 : ggtaactcttagtgaaacaaaaccccttaggttttttcgttacacttagggttacggttgcgatccttagtgtaacaaaatgggttttgttacacttaggaccgcaaCATTGACCTTGACTTGAAAA-TCGTGAAACGCCTCCGCATCTGTAGTATC-------------ATCTGTGT-A------ACTTGCATCGGA--CG---GAAAATAATGCCGGT-AAGCATTGACAGCGATTTTCTA-TT-T-TAA-GTATCAGTGATATTGACCTTGACCTGCAAATCGTAACGTACGGA-------------AAAATGG-A-------------CAGACAAACGTATGGG------------CG---------AACGGTAC-G--ACAGACGGAC----AGGTGTAGCACTATATT--TC---C----C------------------ctatgaaatg
gi|15 : C---TTAGTGTAA-CA-ATTAC-A-----T---------------T-------AA----GGAT---------T------------G----A-------C---AC--CGC-----A-ACCTTCA--GTGTAAC--A------Acat
gi|15 : t-CTGAAT------CT-GTTGTATAAT-CAAATGTC--AATACATGTAT---C-AAA-CATAT-GC---TTAGTGTAACAA-------------TTACATTAAG------GA-TTGACACCG---CAAC----CTTCAGTGTAcatatgtttgatacatgtattgacatttgattatacaacagattcagttagggttataatgtttgttcaactagaaatttatcctgctatggaatggggacatatggtgt
gi|16 : tttgt------GA-T-------GT--CAAC----CCTTAGTGTAttagggttataatgtttgttcaactagaaatttatcctgctatggaatggggacatatggtgt
gi|16 : atgcATGTCAACCCTTAGTGTAACA----------TTTGTTACAacatttgttacatgtattggcatttgattataaaacaggttcatttagtgtaacaattttttttttttaaacttagaaatttatttatccct
gi|16 : atgcgTGTTACACTAAGGGT-TG--ACtgtattggcatttgattataaaacaggttcatttagtgtaacaattttttttttttaaacttagaaatttatttatccct
gi|18 : atgcgatGAAATTCTTATTCCAGGGAAAGGAATATTTT----------GTTACACCAAGGGTT--AT--T-TAT-A-CCGCAAtttgttacatgtattggcatttgattataaaacaggttcatttagtgtaacaattttttttttttaaacttagaaatttatttatccct
gi|2 : aGAACATCGTACTTCTTTGATAAATATATTTTT---------GTTACACTAAGGATT--AT--T-TNN-N-NNNNNNNNN---NNNNNNNNN-NN-N-----N-----N---------------N-------NN----N------------N------------N----N-------N---NN--NNN-----N-NNNNNNN--NNNNNNNAAG------ACAATCTTATTTCTTTGATAAATATAG------T---TTTGTTACACTAAGGGT-T
gi|20 : tagagtaatgctatattagtaatagcatcatcttgagttataattgtcagaaaaggaatacttatgttgcatggggaaggggggtcgagattcagggagaaaagggtcaataacaagttcatcaaaattagaataatgcataaatactttcatttgtcactcattaatagttgtatcctgtttctcagatgttcaactcttgaaagtgacatagcgcgctctagttttattttggttttaaaactgcttcattttgtcaccatcgttataaaagcattcatctaaaagtaggctgacatcgcaatatatcataaaatgtgttttatcttggacatttgtagttatggaacattactaatacaattatcttagtgaaaataaataacattaacgaagagtaagtagactcatatcatctcaaactcttgtttaaaaaacgtaaataaacaaacttatataaaattacgaatctcctttaaatcttcggttttccacttcattattttaagttatttaccagtgttaagaaaaccgtccaacaaagtttttctaagggttgtttnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaaCGGC-------------A-----G-A-------------CAGAC--------GGA------------CG---------GACGA-ACGG--ACGGACGGAC----AGTGATAACATTGTa
gi|3 : GTAA--ATGACGTTGACCTTGACCCGAAAA-TCGTGAAACACAAACGCATCTGAAGTCTCACTG-TTCTGAACATCTGTGT-A------TCTTACATTGGA--GG---GGAAATAATACTGGT-AAGCGTTGACAGCGATT---TA-TC-T-T--------AGTGACATTGACCTTAACCTGAAAATCGTGATGTACGGA-------------A-----GAA-------------CGGAC--------GGACAGACGGATAGGCG---------AACGGTAC-G--ACGGACGGAC----ATGGGTAGCACTATA-C--TC---C----C------------------T-CACCAC--CA------CACC------CA----A----TG--GC--AATTT---CA----AGGCTGT--T---------GCATA-----A------------------ACA-A--T-AT-GTA----TCAGTA-TTA------AACATATAA--ATTGT-ATAAAT------TGTG-TA-AT-TTGCCA----T--AATA----TGT---tcat
gi|3 : atttattgccgcaacc------------------T-TA--AA--CA------TA-T------AA----A----TT--GT--A---T---AA----A-----T--T---------GTGTA-----AT------------TTGCCATA-A--T-AT-GTA----GGGATG-TTA------TAGAGAAGATGATTAC-CTAAAT------TTTGTTACATATTGCAA----C--AATA----TGT---C-A---CATATGGACCCTTAGTGTAACAA-AAT--AT-----TTACACTAAGGGTTGCGG-T-------GT--CAAC----CCCTGGTGTAagggatgttatagagaagatgattacctaaattttgttacatattgcaacaatatgtcacatatggacccttagtgtaacaaaatatttacactaagggttgcggtgtcaacccctggtgtaacagaaactgattgacaccgcaacccttagtgtaacagttgttacaattgttactgtttcactaagggttgcaacagacgtggcaaccagtacttacaagaatttaaacaatcatatattctaaacgtagacaatgtatcgtgaatgctatacagtatagatataagaacttgtaacttgtaagtcgaaataaacttctgtattt
gi|3 : atttattgccgcaaccgtaaatgacgttgaccttgacccgaaaatcgtgaaacacaaacgcatctgaagtctcactgttctgaacatctgtgtatcttacattggaggggaaataatactggtaagcgttgacagcgatttatcttagtgacattgaccttaacctgaaaatcgtgatgtacggaagaacggacggacagacggataggcgaacggtacgacggacggacatgggtagcactatactccctcaccaccacacccaatggcaatttcaaggctgttgcataaacaatatgtatcagtaT---------GTTACACTAAGGGTT--GC--GGTGT------CAATCAG--TTTCTGTTA-CA-C-----C-----A---------------G-------GG----G------------TT-----------G----A-------C---AC--CGC-----A-ACCCTTA--GTGT--------------AA-----------------ATA---------T---TTTGTTACACTAAGGGT-C----C---ATA--------TGT---GACATATTGTT----GCAA------TATGTAACAAAATacagaaactgattgacaccgcaacccttagtgtaacagttgttacaattgttactgtttcactaagggttgcaacagacgtggcaaccagtacttacaagaatttaaacaatcatatattctaaacgtagacaatgtatcgtgaatgctatacagtatagatataagaacttgtaacttgtaagtcgaaataaacttctgtattt
gi|3 : atttattgccgcaaccgtaaatgacgttgaccttgacccgaaaatcgtgaaacacaaacgcatctgaagtctcactgttctgaacatctgtgtatcttacattggaggggaaataatactggtaagcgttgacagcgatttatcttagtgacattgaccttaacctgaaaatcgtgatgtacggaagaacggacggacagacggataggcgaacggtacgacggacggacatgggtagcactatactccctcaccaccacacccaatggcaatttcaaggctgttgcataaacaatatgtatcagtattaaacatataaattgtataaattgtgtaatttgccataatatgtagggatgttatagagaagatgattacctaaTTACACTAAGGGTT--GC--GGTGT------CAACCC---CTGGTGTAA-CA-G-----A-----AAC-------------T-------GA----T------------T------------G----A-------C---AC--CGC-----A-ACCCTTA--GTGTAAC--AGTTGTTAC-A-----------------AT-TGT------T---ACTGTTTCACTAAGGGT-TG---CAACAGACG------TG-GCAACCAG-TACTTACAAG-AA----TTTA---AAC--AATCATATATTCTAAACGTAGACAATGTA-TCG-TGAATGCTATACAGTATAGATATAAGAACTTGTAACTTGTAAGTgttgttacaattgttactgtttcactaagggttgcaacagacgtggcaaccagtacttacaagaatttaaacaatcatatattctaaacgtagacaatgtatcgtgaatgctatacagtatagatataagaacttgtaacttgtaagtcgaaataaacttctgtattt
gi|4 : atttattgccgcaaccgtaaatgacgttgaccttgacccgaaaatcgtgaaacacaaacgcatctgaagtctcactgttctgaacatctgtgtatcttacattggaggggaaataatactggtaagcgttgacagcgatttatcttagtgacattgaccttaacctgaaaatcgtgatgtacggaagaacggacggacagacggataggcgaacggtacgacggacggacatgggtagcactatactccctcaccaccacacccaatggcaatttcaaggctgttgcataaacaatatgtatcagtattaaacatataaattgtataaattgtgtaatttgccataatatgtagggatgttatagagaagatgattacctaaattttgttacatattgcaacaatatgtcacatatggacccttagtgtaacaaaatatAGAAAGAGAAAAATATCGAAACGACATGAATACCCCCTCCCTC---TATCTTTCTATTTTTTGCAAAcgaaataaacttctgtattt
gi|4 : TTTCTATTTTTTGCAAAGGTGAT------CTTGACTCAAGAA-TCCATAAGCGCAAACTCGTCCGAAGTATAT-TGTTTCTGAACACGTGTATGA------AGTTTCATCAAAATTGTATTAAAATAAGGTCGGTCGAGCGGTTACTGTGCTTTTCTG-CTAT-A-A-GTAACGATGAC--TGACTTTGACCAGAAAGTCGTGAggtgatcttgactcaagaatccataagcgcaaactcgtccgaagtatattgtttctgaacacgtgtatgaagtttcatcaaaattgtattaaaataaggtcggtcgagcggttactgtgcttttctgctataagtaacgatgactgactttgaccagaaagtcgtgaaacgctaacgtattcaaagtatctctgttctgaacatctgtaacttgcatgggatggaaaataatgccggtaaacgttgaaatcgattttctattttgagtaactgtgacgttgaccttgacctgaaaatcgttacgtacggaaggacggatggacgatacgcaaaagacggacatgggtagcactatatcccattcaccaccttaccccaacccccatgtcaagccggttgcataaataatacgtatcggtattaaacagatgaattgtataaattgtgtaatttgtcataatatgtagagataatatagagaagatgatttccttgattttgttacatatttcaacaatatgtcacatatcgcccttaagtgtaacaaaatatttttgttacactaacagttgcggtgacaagggagactttgttagtaaacgttttattaaatg
gi|4 : agaaagagaaaaatatcgaaacgacatgaataccccctccctctatcCGCAAACTC-GTCCGAAGTATATTGTTTCTGAACACGTGTATGAAGTTTCATCAAAATTGTATTAAAATAAGGTCGGTCGAGCGGTTACTGTGCTTTTCTGCTATAAGTAACGATGAC--TGACTTTGACCAGAAAG-TCGTGAAACGCTAACGTATTCAAAGTATCTCTG-TTCTGAACATC--TGT-A------ACTTGCATGGGA--TG---GAAAATAATGCCGGT-AAACGTTGAAATCGATTTTCTA-TT-T-TGA-GTAACTGTGACGTTGACCTTGACCTGAAAATCGTTACGTACGGA-------------A----------------------GGAC--------GGA------------TG---------GACGATAC-GCAAAAGACGGAC----ATGGGTAGCACTATATC--CC---A----T------------------T-C---AC--CA------CC-TTACCCCAA----C----CC--CC--A---TGTCAAGCCGG-----T--T---------GCATA-----A------------------ATA-A--T-AC-GTA----TCGGTA-TTA------AACAGATGA--ATTGT-ATAAAT------TGTG-TA-AT-TTGTCA----T--AATA----TGT---aacgctaacgtattcaaagtatctctgttctgaacatctgtaacttgcatgggatggaaaataatgccggtaaacgttgaaatcgattttctattttgagtaactgtgacgttgaccttgacctgaaaatcgttacgtacggaaggacggatggacgatacgcaaaagacggacatgggtagcactatatcccattcaccaccttaccccaacccccatgtcaagccggttgcataaataatacgtatcggtattaaacagatgaattgtataaattgtgtaatttgtcataatatgtagagataatatagagaagatgatttccttgattttgttacatatttcaacaatatgtcacatatcgcccttaagtgtaacaaaatatttttgttacactaacagttgcggtgacaagggagactttgttagtaaacgttttattaaatg
gi|4 : agaaagagaaaaatatcgaaacgacatgaataccccctccctctatctttctattttttgcaaaggtgatcttgactcaagaatccataag------------------T-TA--AA--CA------GA-T------GA----A----TT--GT--A---T---AA----A-----T--T---------GTGTA-----AT------------TTGTCATA-A--T-AT-GTA----GAGATA-ATA------TAGAGAAGATGATTTC-CTTGAT------TTTGTTACATATTTCAA----C--AATA----TGT---C-A---CATATCGCCCTTAAGTGTAACAA-AAT--ATTTTTGTTACACTAAagagataatatagagaagatgatttccttgattttgttacatatttcaacaatatgtcacatatcgcccttaagtgtaacaaaatatttttgttacactaacagttgcggtgacaagggagactttgttagtaaacgttttattaaatg
gi|4 : agaaagagaaaaatatcgaaacgacatgaataccccctccctctatctttctattttttgcaaaggtgatcttgactcaagaatccataagcgcaaactcgtccgaagtatattgtttctgaacacgtgtatgaagtttcatcaaaattgtattaaaataaggtcggtcgagcggttactgtgcttttctgctataagtaacgatgactgactttgaccagaaagtcgtgaaacgctaacgtattcaaagtatctctgttctgaacatctgtaacttgcatgggatggaaaataatgccggtaaacgttgaaatcgattttctattttgagtaactgtgacgttgaccttgacctgaaaatcgttacgtacggaaggacggatggacgatacgcaaaagacggacatgggtagcactatatcccattcaccaccttaccccaacccccatgtcaagccggttgcataaataatacgtatcggta-CA-AC----A-----A---------------T-------AT----G------------T------------C----A-------C---ATATCGC---------CCTTAA-GTGTAAC-----------AA-----------------A-ATAT------T---TTTGTTACACTAACAGT-TG---CGG-TGAC-A---AGGG---AGAC-T-TTGTT---AGTAAACGTTTTAT-TAAcagttgcggtgacaagggagactttgttagtaaacgttttattaaatg
gi|5 : agaaagagaaaaatatcgaaacgacatgaataccccctccctctatctttctattttttgcaaaggtgatcttgactcaagaatccataagcgcaaactcgtccgaagtatattgtttctgaacacgtgtatgaagtttcatcaaaattgtattaaaataaggtcggtcgagcggttactgtgcttttctgctataagtaacgatgactgactttgaccagaaagtcgtgaaacgctaacgtattcaaagtatctctgttctgaacatctgtaacttgcatgggatggaaaataatgccggtaaacgttgaaatcgattttctattttgagtaactgtgacgttgaccttgacctgaaaatcgttacgtacggaaggacggatggacgatacgcaaaagacggacatgggtagcactatatcccattcaccaccttaccccaacccccatgtcaagccggttgcataaataatacgtatcggtattaaacagatgaattgtataaattgtgtaatttgtcataatatgtagagataatatagagaagatgatttccttgattttgttacatattt------ATTTGCATCGGA--TG---CAAAGTAATACCCGT-AAGCGTTGACACCGATTTTCTA-----------------TGACATTGACCTTGTCCT-AAAATCGTGACGTACAGA-------------A-----G-AACGGG--------CGGAC--------AGA------------CGGATAGGCAAGACGGTAT-G--ACGGACGGAC----ATGGGTAGCAATATATC--CT---CACCAC------------------TGCA--AC--C-------CA-TTTC---AA----AGCGGTT--GC--A---C----G----G-----T--T---------GCGTA-----A------------------ACA-A--T-AT-ATA----atg
gi|5 : --A---T---AA----A-----T--T---------GTGTA-----AT------------TTGCCATA-C--T-AT-GTA----GGGATA-TTA------TAGAAAAGATAATTTC-CTAAAT------TGTGTTACATATTGCAA----C--AATA----TGT---C-G---CATATCGCCCCTTGGTGTAACAA-AAT--ATTTTTGTTACACTTAG------GG-T-------tcagaattaaacagataaattgtgtaatttgccatactatgtagggatattatagaaaagataatttcctaaattgtgttacatattgcaacaatatgtcgcatatcgccccttggtgtaacaaaatatttttgttacacttagggttgcggtgtaacataaactaattgtgttacactaagggttgcggtgtaacataaactaattttgttacactaagggttgcggaatcaacccttagtgtaacaattgtt
gi|5 : atttgcatcggatgcaaagtaatacccgtaagcgttgacaccgattttctatgacattgaccttgtcctaaaatcgtgacgtacagaagaacgggcggacagacggataggcaagacggtatgacggacggacatgggtagcaatatatcctcaccactgcaacccatttcaaagcggttgcacggttgcgtaaacaatatatatcagaattaaacagTT--ATG-T-TAC-A-CCGCAACCC---TTAGTGTAA-CA-C-----A-----A---------------T-------TA----GTT----------T------------ATGTTA-------C---AC--CGC-----A-ACCCTAA--GTGTAAC--A------A-AA-----------------ATA---------T---TTTGTTACACCAAGG----G--GCGATATGCGACATATTGTtgcggtgtaacataaactaattgtgttacactaagggttgcggtgtaacataaactaattttgttacactaagggttgcggaatcaacccttagtgtaacaattgtt
gi|5 : atttgcatcggatgcaaagtaatacccgtaagcgttgacaccgattttctatgacattgaccttgtcctaaaatcgtgacgtacagaagaacgggcggacagacggataggcaagacggtatgacggacggacatgggtagcaatatatcctcaccactgcaacccatttcaaagcggttgcacggttgcgtaaacaatatatatcagaattaaacagataaattgtgtaatttgccatactatgtagggatattatagaaaagataatttcctaaattgtgttacatattgcaATATTTTT---------GTTACACTTAGGGTT--G------------CG------------GTGTAA-CATA-----A-----AC--------------T-------AATTGTG------------T------------T----A-------C---AC--T-------A-AGGGTTGCGGTGTAAC---------ATAA-----------------AC-TAA------T---TTTGTTACACTAAGGGT-TG--CGGA-ATactaattttgttacactaagggttgcggaatcaacccttagtgtaacaattgtt
gi|5 : atttgcatcggatgcaaagtaatacccgtaagcgttgacaccgattttctatgacattgaccttgtcctaaaatcgtgacgtacagaagaacgggcggacagacggataggcaagacggtatgacggacggacatgggtagcaatatatcctcaccactgcaacccatttcaaagcggttgcacggttgcgtaaacaatatatatcagaattaaacagataaattgtgtaatttgccatactatgtagggatattatagaaaagataatttcctaaattgtgttacatattgcaacaatatgtcgcatatcgccccttggtgtaacaaaTT---------GTTACACTAAGGGTTG-AT--T-------CCGCAACCC---TTAGTGTAA-CA-A-----A-----A---------------T-------TA----GTT----------T------------ATGTTA-------C---AC--CGC-----A-ACCCTTA--GTGTAAC---------ACAA-----------------TTA-GT------T---TATGTTACACcaacccttagtgtaacaattgtt
gi|6 : atttgcatcggatgcaaagtaatacccgtaagcgttgacaccgattttctatgacattgaccttgtcctaaaatcgtgacgtacagaagaacgggcggacagacggataggcaagacggtatgacggacggacatgggtagcaatatatcctcaccactgcaacccatttcaaagcggttgcacggttgcgtaaacaatatatatcagaattaaacagataaattgtgtaatttgccatactatgtagggatattatagaaaagataatttcctaaattgtgttacatattgcaacaatatgtcgcatatcgccccttggtgtaacaaaatatttttgttacacttagggttgcgCTC---TTAGTGTAA-CA-C-----A-----A---------------T-------CA----G------------TTTTTGTTACATTA----AGGGTTGTC---AT--CGC-----A-ATCCTTA--GTGTTAC--A------A-AA-----------------ACAT------------TTTGTTACACTAAGG----G--GC-A-ATA--------TGT---GACATATTGTT----GCAA----TTTG--TAATAAAATttgtt
gi|6 : --A---T---AC----A-----T--T----------TGTA-----AT------------TTGCCATA-A--T-AT-GTA----GGGATA-TTA------TAGAGAAGACGATTTT-CTAAAT------TTTATTACAAATTGCAA----C--AATA----TGT---C-A---CATATTGCCCCTTAGTGTAACAA-AAT--GTTTTTGTAACACTAAGGATTGCGA-T-------GA--CAAC----CCTTAATGTAttagaaaatcgtcttctctataatatccctacatattatggcaaattacaaatgtatctgtttaatactgatacgtattgttaatgcaactgccttgaaatgggggtggcatggggagggttggtgaggggctaatatagtgctacccatgtccatctgttgtaccatccgtccatccgtctgtccacccgttgttctgtacataacaatttcagttacggtcagtatcactgctactataaatagaaaatccctgtcaacgtttacaagtattattttgcatcggata
gi|6 : ctcttagtgtaacacaatcagtttttgtATCCGA--TG---CAAAATAATACTTGT-AAACGTTGACAGGGATTTTCTA-TT-TAT-A-GTAGCAGTGATACTGACCGTAA-CTG-AAATTGTTATGTACAGAACAACGGGTGGACA-----G-A-------------CGGAT--------GGA------------CG---------GATGGTAC-A--ACAGATGGAC----ATGGGTAGCACTATATTAGCC---C----C------------------T-C---AC--CA------ctgtttaatactgatacgtattgttaatgcaactgccttgaaatgggggtggcatggggagggttggtgaggggctaatatagtgctacccatgtccatctgttgtaccatccgtccatccgtctgtccacccgttgttctgtacataacaatttcagttacggtcagtatcactgctactataaatagaaaatccctgtcaacgtttacaagtattattttgcatcggata
gi|7 : ctcttagtgtaacacaatcagtttttgttacattaagggttgtcatcgcaatccttagtgttacaaaaacattttgttacactaaggggcaatatgtgacatattgttgcaatttgtaataaaatttagaaaatcgtcttctctataatatccctacatattatggcaaattacaaatgtatctgtttaatactgatacgtattgttaatgcaactgccttgaaatgggggtggcatggggagggtTGAAGATCTGTTT-A------ACTTGCATCGGA--TG---CAAAATAATGCCGGT-AAGCGTTGACAGCGATTTTCTATTT-T-T-A-TCAACAATGGCATTAACCTTAACCTT-AAATCGTGACGTACGGA-------------A-----G-AAGGGGCGGACACTCGGAT--------AGA------------CG---------AACAGTAC-G--ACGGACGGAC----TTAGGTAGCATTATACC--CCCAAC----C------------------C-CA--CC--CAGCCCTTCT-C------AA----GC---TT--GC--A---T---AA----A-----CAAT---------ACGTATCAGTATTAAACAGATAAGTTG-TATA-AACT-GT-GTAATTTGCCATA-ATATG----TAGAAAAGGTGATTAC-CTAAGT------TTTGTTATATATTGCAA----C--AATA----TGT---C-T---CATATCGCACCTTAATGTAACAC-AAT--ATTTTTTTTACATTAAG------GG-T--------T--TAAT----GCTTa
gi|8 : TAACGGTT--AT--T-TAT-AACCACAACCC---TTAGTGTAA-CA-A-----A-----AA--------------T-------AA----G------------TTT----------A----A----------------GA-----A-AATCTTA--TTGTGAT--G------ATAA-----------------ATATAT------T---TTTGTCACACTAAGGGT-TG--ACGA-ATATGA---ATTGTATAGTCAT-TCATT---AATAA----TTTGT-TAACAA-----CAGA--CCTAATGTTTACA---TACTTGTTGGCCCTTATAC-TTAA--------------------TGAAAGTTAATATGGTATAAATAATACAA-CCAACACGAAATGTAACACACACACCATATAAACATATTCCTA------TATTTAATCTAAGCAATTGTACAGTACAATTTCTTGATTTCATCAGAGATATAAAATACTATTATCTGTC-------TCATACATGTTCCTACCTAGTATATGAACAAAAGAACAGTTC-AACGTGTTACCTGTTCCCTTTTTAGCTtcactggaaatagttattgatactgtt
gi|9 : G---------GACAGTAC-G--ACGGACGGACGGAGATGGGTAGCACTATATC--CCAT-C----CCATTTTAAGACGGTGGTTT-AA--ACAACA------CG-T------AACAACA----TTAAACAAA---T---AA----A-----T--TGTATAAATTGTGTA-----AT------------TTGCTATA-A--T-AT-ATA----GAGATA-TCA------TAGAGAAGTTGAGTTC-TGAAAT------TTTGTTACATATTGCCA----CTTAGTT----TAA---CAA---AATAT-G----TT--TTTAACAA-AAT--ATGTTTGTTAAACTAAG------GG-TTGCA---GTTATAAC----CCCTAGTGT
gi|9 : ATATGTTT---------GTTAAACTAAGGGTTGCAG--T-TAT-------AACCC---CTAGTGTTA-CA-A-----AT----A---------------T--------------------------T------------G----A-------T---TT--TG-------------TA--GGGTAAC--A------A----------------------ATAT------TGAGTTTGTTACACTAAGGGA-TG--tacaaatattgattttgtagggtaacaaatattgagtttgttacactaagggatgttgttacattaaagccacaaagcatttacacacttgatatagtata
gi|9 : ggacagtacgacggacggacggagatgggtagcactatatcccatcccattttaagacggtggtttaaacaacacgtaacaacattaaacaaataaattgtataaattgtgtaatttgctataatatatagagatatcatagagaagttgagttctgaaattttgttacatattgccacttagtttaacaaaatatgtttttaacaaaA----TGT---A-A---CA-A-CATCCCTTAGTGTAACAA-ACTCAATATTTGTTACCCTAttgttacattaaagccacaaagcatttacacacttgatatagtata
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|17 ): AAAATGCTATGGTTAAAAAAAGCGGATTTTATAAAAATGATTTTTTGTCGGATTATCATGCGCGATAATAGCTATGTATGATTTGAGG
Unaligned ( gi|19 ): ACTAAAACGATCAATAGTAAAATTCATCAGATTGTTAAACAAGTATTAATGAAACA
Alignments
lowQualScore : 111111111 4444444444444444 8888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888 111 33333333333333333 1 1111 11 11 222 4444444444444444444 1 1 1 1 222222 3333333 11 1 222222 222 33 1 11 11 111111 11111 66666666666666666666666666666666666 11111111 22222222222222222222222 66666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666 22222222222222222222222 111111 111111 1111 111 333333333333333333333 1111
lowQualScore : 555555555 4444444444444444 0 666 2 2 4444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444 2 000 666 88888888888888888 1 2 5 2 2222 44 0 0 3 88 333 6 0 7 7 3333333333333333333 1 1 5 5 5 5 1 1 999999 1 1 2222222 66 1 5 1 888888 1 1 111 1 1 1 00 1 1 1 1 1 1 1 1 1 2 77 8 1 11 8 6 666666 66 9999 5 5 5 77777 2 6 88888888888888888888888888888888888 88888888 77777777777777777777777 4 66 9999 66 55555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555 44444444444444444444444 3 55 3 3 7777 0 4 777777 2 1 3 000000 3 5555 55 7777 555 4 222 5 44 3 88888 1 777777777777777777777 0000
lowQualScore : ......... ................ . ... . . ................................................................................................................................................................ . ... ... ................. . . . . .... .. . . . .. ... . . . . ................... . . . . . . . . ...... . . ....... .. . . . ...... . . ... . . . .. . . . . . . . . . . .. . . .. . . ...... .. .... . . . ..... . . ................................... ........ ....................... . .. .... .. ........................................................................................................... ....................... . .. . . .... . . ...... . . . ...... . .... .. .... ... . ... . .. . ..... . ..................... ....
lowQualScore : 444444444 6666666666666666 1 111 2 2 8888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888 5 666 222 11111111111111111 4 7 0 3 1111 00 8 8 7 33 333 7 7 3 3 3333333333333333333 0 0 5 0 0 0 0 0 000000 0 0 5555555 55 0 5 0 555555 0 0 000 0 0 0 55 0 0 0 0 0 0 0 0 0 8 00 0 0 00 0 7 444444 99 8888 0 0 0 44444 1 2 22222222222222222222222222222222222 11111111 22222222222222222222222 4 11 4444 99 55555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555 66666666666666666666666 6 00 6 6 7777 7 0 000000 3 0 6 555555 5 5555 00 1111 888 0 555 1 22 6 11111 4 000000000000000000000 6666
consensus : GAAAATCGTATTCCAGGGATAAGTATATTTTT---------GTTACACTAAGGGTT--AT--T-TAT-A-CCGCAACCC---TTAGTGTAA-CA-A-----A-----A---------------T-------AA----G------------T------------A----A-------C---AC--CGC-----A-ACCCTTA--GTGTAAC--G------ACAA-----------------ATATAT------T---TTTGTTACACTAAGGGT-TG--ACGA-ATACG--A---ATT-GTATAGACAT-TCGTTAGTAA----TTTAT-TAACAAAATCACAGA--CCAAACGTTTACA---TACTCGTTGGACCTTATACATTAAAGATGTAAGAA--TGTA--TTGAAAGTTAATNTGGCATAAATNATACAAGCCAACACGAAATGTAACACGCACACCNTATAANCATATTCCTAGTCCTATATTTNATCTAAGCAATTGTACAGTACAANTTCTTGATTTCACCAGAGATATAAAATACTATTATCTGTCTCTCATTTCATACATGTTCCTACCTAGTATATGANCGAAAGNACAGTTCAAANGTGTTACCTGTTCCCTTTNTAGCTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGAGAGAGAAAAATATCGAAACGACATGAATGCCCCCCNCCCCACACATCTTNCNATTNTTCGCAAACTCTGTCCGAGGTATNTTGNTTCTGAACACNTGCATGAAGTTTCATCAAAATTGNATTAAAANAAGGNCGGTCGAGCGGTNGCNGTGNTTTTCTGCTTTTAGTAACGATGACGTTGACCTTGACCCGAAAA-TCGTGAAACGCAAACGCATCCGAAGTATCTCTG-TTCTGAACATCTGTGT-A------ACTTGCATCGGA--TG---NAAAATAATGCCGGT-AAGCGTTGACAGCGATTTTCTA-TT-T-T-A-GTAACAGTGACATTGACCTTGACCTGAAAATCGTGACGTACGGA-------------A-----G-A-------------CGGAC--------GGA------------CG---------GACGGTAC-G--ACGGACGGAC----ATGGGTAGCACTATATC--CC---C----C------------------T-CA--AC--CA------CA-T------AA----A----TT--GC--A---T---AA----A-----T--T---------GCGTA-----AT------------TTGCCATA-A--T-AT-GTA----GGGATA-TTA------TAGAGAAGATGATTNC-CTAAAT------TTTGTTACATATTGCAA----C--AATA----TGT---C-A---CATATCGCCCCTTAGTGTAACAA-AAT--ATTTTTGTTACACTAAG------GG-T-------GT--CAAC----CCTTAGTGTA
Reference ( family-3843 ) : GAAAATCGTATTCCAGGGATAAGTATATTTTT---------GTTACACTAAGGGTT--AT--T-TAT-A-CCGCAACCC---TTAGTGTAA-CA-A-----A-----A---------------T-------AA----G------------T------------A----A-------C---AC--CGC-----A-ACCCTTA--GTGTAAC--G------ACAA-----------------ATATAT------T---TTTGTTACACTAAGGGT-TG--ACGA-ATACG--A---ATT-GTATAGACAT-TCGTTAGTAA----TTTAT-TAACAAAATCACAGA--CCAAACGTTTACA---TACTCGTTGGACCTTATACATTAAAGATGTAAGAA--TGTA--TTGAAAGTTAATNTGGCATAAATNATACAAGCCAACACGAAATGTAACACGCACACCNTATAANCATATTCCTAGTCCTATATTTNATCTAAGCAATTGTACAGTACAANTTCTTGATTTCACCAGAGATATAAAATACTATTATCTGTCTCTCATTTCATACATGTTCCTACCTAGTATATGANCGAAAGNACAGTTCAAANGTGTTACCTGTTCCCTTTNTAGCTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGAGAGAGAAAAATATCGAAACGACATGAATGCCCCCCNCCCCACACATCTTNCNATTNTTCGCAAACTCTGTCCGAGGTATNTTGNTTCTGAACACNTGCATGAAGTTTCATCAAAATTGNATTAAAANAAGGNCGGTCGAGCGGTNGCNGTGNTTTTCTGCTTTTAGTAACGATGACGTTGACCTTGACCCGAAAA-TCGTGAAACGCAAACGCATCCGAAGTATCTCTG-TTCTGAACATCTGTGT-A------ACTTGCATCGGA--TG---NAAAATAATGCCGGT-AAGCGTTGACAGCGATTTTCTA-TT-T-T-A-GTAACAGTGACATTGACCTTGACCTGAAAATCGTGACGTACGGA-------------A-----G-A-------------CGGAC--------GGA------------CG---------GACGGTAC-G--ACGGACGGAC----ATGGGTAGCACTATATC--CC---C----C------------------T-CA--AC--CA------CA-T------AA----A----TT--GC--A---T---AA----A-----T--T---------GCGTA-----AT------------TTGCCATA-A--T-AT-GTA----GGGATA-TTA------TAGAGAAGATGATTNC-CTAAAT------TTTGTTACATATTGCAA----C--AATA----TGT---C-A---CATATCGCCCCTTAGTGTAACAA-AAT--ATTTTTGTTACACTAAG------GG-T-------GT--CAAC----CCTTAGTGTA
gi|1 : GAGAATCTTATTCCAGGGATAGGTATATCTTT---------GTTACACTAAGGGTT--AT--T-TAT-AACTGCAACCC---TTAGTGTAA-CA-A-----A-----A---------------T-------AA----G------------T------------A----A-------C---AC--AAT-----A-AGTTTTG--ATAAGAC--G------ATAA-----------------GTATAT------T---TTTGTTACACTAAGGGT-AG--ACGA-ATATG--A---ATT-GTATAGTCAT-TCATTAGTAA----TTTAT-TTACAAAATTACAGA--CCAAACGTTTACA---TACTTGTTGGACCTTATGTATTAAAAATGTAAAAA--TGTA--TTAAAAATTAATTTGACATAAATTAT-CAAGCCAACACAAAAT-TAA-ATGTACACTTTATAATCATATTCCTAGTCCTATATTTTATCTAAGCAATTGTACAGTACAAGTTCTTGATTTCACCAGAGATATAAAATACTATTATCTGTCTCTCATTTCATACATGTTCCTACCTAGTATATG-TCGAAAATACAGTTCAAAAGTGTTACTT------TTTGTAGCT
gi|1 : AAAGAGAGAAAAATATCAAAACGACATGAATGTCCCCCACCCCACACATCTTACAATTGTTCGCAAACT-TGTCCGAGGTATCTTGGTTCTGAACACCTACATGAAGTTTCATCAAAATTGGATTAAAAGAAGGGCAGTCAAGCGGTAGCGGTGATTTTCTGCTTTTAGTAATGATGACATTGACCTTGACCCGAAAAATCGTGAAATGCAAACGCATCCGAATTATCTCTG-TTCTGAACATCTGTGT-ATTTGTTACTTGCATCTGA--TG---GGAAATAATGCCGGT-AATTGTTGACAGCAATTTTCTA-TT-T-T-ATGTAACAGTGACATTGACCTTGACCTGAAAATCGTGATTTACGAA-------------A-----A-A-------------CAGAA--------GGA------------CA---------GACGGCAC-G--ACAGACGGAC----ATGGGTAGCACTATATC--TC---C----C------------------T-CA--AC--CA------TA-T------AA----A----TT--GT--A---T---AA----A-----T--T---------GTGAA-----AT------------TTGCCATA-A--TAAT-GCA----GGGATA-TTA------TAGAGAAGATGATTAA-CTAAAT------TTTGTTGCATATTGCAA----C--AATA----TGT---C-A---CAAATAGCCCTTTAGTGAAACAA-AAC--ATTTTTGTTACACTAAG------GG-T-------GT--CAAC----CCTTAGTGTAacaatttagtaatacctcatgattcatgactaatccctttccaaaataaccaaaacattcactgaaataatgttttgtttgtaagacttcttacttttctttttataattatcatttttccaatcttccacagcatatttacagtcacatttgttagttaaaatatacacgaaaaaaagagagaaaaatatcaaaacgacatgaatgtcccccaccccacacatcttacaattgttcgcaaacttgtccgaggtatcttggttctgaacacctacatgaagtttcatcaaaattggattaaaagaagggcagtcaagcggtagcggtgattttctgcttttagtaatgatgacattgaccttgacccgaaaaatcgtgaaatgcaaacgcatccgaattatctctgttctgaacatctgtgtatttgttacttgcatctgatgggaaataatgccggtaattgttgacagcaattttctattttatgtaacagtgacattgaccttgacctgaaaatcgtgatttacgaaaaacagaaggacagacggcacgacagacggacatgggtagcactatatctccctcaaccatataaattgtataaattgtgaaatttgccataataatgcagggatattatagagaagatgattaactaaattttgttgcatattgcaacaatatgtcacaaatagccctttagtgaaacaaaacatttttgttacactaagggtgtcaacccttagtgtaccca
gi|10 : gagaatcttattccagggataggtatatctttgttacactaagggttatttataactgcaacccttagtgtaacaaaataagtaacacaataagttttgataagacgataagtatatttttgttacactaagggtagacgaatatgaattgtatagtcattcattagtaatttatttacaaaattacagaccaaacgtttacatacttgttggaccttatgtattaaaaatgtaaaaatgtattaaaaattaatttgacataaattatcaagccaacacaaaattaaatgtacactttataatcatattcctagtcctatattttatctaagcaattgtacagtacaagttcttgatttcaccagagatataaaatactattatctgtctctcatttcatacatgttcctacctagtatatgtcgaaaatacagttcaaaagtgttactttttgtagctacaatttagtaatacctcatgattcatgactaatccctttccaaaataaccaaaacattcactgaaataatgttttgtttgtaagacttcttacttttctttttataattatcatttttccaatcttccacagcatatttacagtcacatttgttagttaaaatatacacgaaaaACGC---TTAGTGTAA-CA-AC----A-----A---------------TTGTTTCTAA----GGGT---------T------------G----A-------C---AC--CGT-----A-ACC-TTA--GTGTATC-----------AA-----------------AAATGT------T---TTTGTTATACTAAGGGT-TGCCACAA-Accca
gi|10 : tattgtatttatattcgtcataccattgtttatagaatgttatggttataaaaaagcggattttatgccggattatcatgatcaataatagctatgtatgcA-----AT------------TT--CGTACA--T-ATAGCA----GGGATAATTAAATTTCTAAAAGAAATG-TTACACTAAATGAACCCTTT-TTATA-AT--CAAATGTC--AATA----CATGAAC-AAAACATA-CGC---TTAGTGTAACAACAAT---TGTTT------CTAAG------GGTT-------GA--CACCGTAACCTTAGTGTAatgttttgttcatgtattgacatttgattataaaaagggttcatttagtgtaacatttcttttagaaatttaattatccctgctatatgtacgaaattggagcatatagtttt
gi|10 : tattgtatttatattcgtcataccattgtttatagaatgttatggttataaaaaagcggattttatgccggattatcatgatcaataatagctatgtatgctttgtggcaacccttagtataacaaaaacatttttgaCAGGGATAATTAAATTTCTAAAAGAAATGTTACACTAA--------------AT-G-----AACCC---TTTTTATAATCA-AATGTCA-----A---------------T-------AC----A------------TG-----------A----A-------C---AA--AAC-----ATACGCTTA--GTGTAAC--A------ACAA----------------------------------TTGTT--TCTAAGGGT-TG--ACggagcatatagtttt
gi|11 : tattgtatttatattcgtcataccattgtttatagaatgttatggttataaaaaagcggattttatgccggattatcatgatcaataatagctatgtatgctttgtggcaacccttagtataacaaaaacatttttgatacactaaggttacggtGAAAATCGTGTTTCGGCGACAAGTATATGTTT---------GTTTTACTAAGGGTT--AT--T-TATAA-CCGCAAACA---TTAGTGTAA-GG-A-----A-----A---------------T-------AA----G------------T------------ctatatgtacgaaattggagcatatagtttt
gi|12 : tnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaaattacacaaattaaagcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaGAAAATCGTATTCCAAAGATAAGTATATTTTC---------GTTACACTAAGGGTT--GT--T-TACAA-CTGCAACCC---TT
gi|13 : nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaTT---------GTTACACTAAGAGTT--AC--G-T------TGCGGTCC---TAAGTGTAA-CA-A-----A-----ACCCATTTTGTTACACT-------AA----G------------G------------A----T-------CGCAAC--CGT-----A-ACCCTAA--GTGTAAC--G------AAAA-----------------A-ACCTAAGGGGT---TTTGTTTCACTAAGAGT-T
gi|13 : ggtTTTTC---------GTTACACTTAGGGTT--ACGGT-T-------GCGATCC---TTAGTGTAA-CA-A-----A-----A---------------T-------GG----GTTTTGTTACACTT------------A----G-------G---AC--CGCAACGTA-ACTCTTA--GTGTAAC--A------ACA----------------------------------CTTGTTACACTAAGCGTATG--TTTG-GCACA--------T-GTATAGACAT-TTGATAATAA----cacttgttacactaagcgtatgtttggcacatgtatagacatttgataataaaacgggttctctaagtaaaaccttttttaactagaaatttatttatccctgctatgaaatg
gi|13 : ggtaactcttagtgaaacaaaaccccttaggttCAGGGATAAATAAATTTCTA--------GTTAAA--AAAGGTTTTAC--T-TAG-A---G-AACCCGTTTTATTAT---CA-A-----ATGTCTA---------------T-------AC----A------------TGTGCCA------A----A-------C---AT------------ACGCTTA--GTGTAAC-----------AA-----------------GTGT--------------TGTTACACTAAGAGT-T---ACGaacgggttctctaagtaaaaccttttttaactagaaatttatttatccctgctatgaaatg
gi|14 : ggtaactcttagtgaaacaaaaccccttaggttttttcgttacacttagggttacggttgcgatccttagtgtaacaaaatgggttttgttacacttaggaccgcaaCATTGACCTTGACTTGAAAA-TCGTGAAACGCCTCCGCATCTGTAGTATC-------------ATCTGTGT-A------ACTTGCATCGGA--CG---GAAAATAATGCCGGT-AAGCATTGACAGCGATTTTCTA-TT-T-TAA-GTATCAGTGATATTGACCTTGACCTGCAAATCGTAACGTACGGA-------------AAAATGG-A-------------CAGACAAACGTATGGG------------CG---------AACGGTAC-G--ACAGACGGAC----AGGTGTAGCACTATATT--TC---C----C------------------ctatgaaatg
gi|15 : C---TTAGTGTAA-CA-ATTAC-A-----T---------------T-------AA----GGAT---------T------------G----A-------C---AC--CGC-----A-ACCTTCA--GTGTAAC--A------Acat
gi|15 : t-CTGAAT------CT-GTTGTATAAT-CAAATGTC--AATACATGTAT---C-AAA-CATAT-GC---TTAGTGTAACAA-------------TTACATTAAG------GA-TTGACACCG---CAAC----CTTCAGTGTAcatatgtttgatacatgtattgacatttgattatacaacagattcagttagggttataatgtttgttcaactagaaatttatcctgctatggaatggggacatatggtgt
gi|16 : tttgt------GA-T-------GT--CAAC----CCTTAGTGTAttagggttataatgtttgttcaactagaaatttatcctgctatggaatggggacatatggtgt
gi|16 : atgcATGTCAACCCTTAGTGTAACA----------TTTGTTACAacatttgttacatgtattggcatttgattataaaacaggttcatttagtgtaacaattttttttttttaaacttagaaatttatttatccct
gi|16 : atgcgTGTTACACTAAGGGT-TG--ACtgtattggcatttgattataaaacaggttcatttagtgtaacaattttttttttttaaacttagaaatttatttatccct
gi|18 : atgcgatGAAATTCTTATTCCAGGGAAAGGAATATTTT----------GTTACACCAAGGGTT--AT--T-TAT-A-CCGCAAtttgttacatgtattggcatttgattataaaacaggttcatttagtgtaacaattttttttttttaaacttagaaatttatttatccct
gi|2 : aGAACATCGTACTTCTTTGATAAATATATTTTT---------GTTACACTAAGGATT--AT--T-TNN-N-NNNNNNNNN---NNNNNNNNN-NN-N-----N-----N---------------N-------NN----N------------N------------N----N-------N---NN--NNN-----N-NNNNNNN--NNNNNNNAAG------ACAATCTTATTTCTTTGATAAATATAG------T---TTTGTTACACTAAGGGT-T
gi|20 : tagagtaatgctatattagtaatagcatcatcttgagttataattgtcagaaaaggaatacttatgttgcatggggaaggggggtcgagattcagggagaaaagggtcaataacaagttcatcaaaattagaataatgcataaatactttcatttgtcactcattaatagttgtatcctgtttctcagatgttcaactcttgaaagtgacatagcgcgctctagttttattttggttttaaaactgcttcattttgtcaccatcgttataaaagcattcatctaaaagtaggctgacatcgcaatatatcataaaatgtgttttatcttggacatttgtagttatggaacattactaatacaattatcttagtgaaaataaataacattaacgaagagtaagtagactcatatcatctcaaactcttgtttaaaaaacgtaaataaacaaacttatataaaattacgaatctcctttaaatcttcggttttccacttcattattttaagttatttaccagtgttaagaaaaccgtccaacaaagtttttctaagggttgtttnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaaCGGC-------------A-----G-A-------------CAGAC--------GGA------------CG---------GACGA-ACGG--ACGGACGGAC----AGTGATAACATTGTa
gi|3 : GTAA--ATGACGTTGACCTTGACCCGAAAA-TCGTGAAACACAAACGCATCTGAAGTCTCACTG-TTCTGAACATCTGTGT-A------TCTTACATTGGA--GG---GGAAATAATACTGGT-AAGCGTTGACAGCGATT---TA-TC-T-T--------AGTGACATTGACCTTAACCTGAAAATCGTGATGTACGGA-------------A-----GAA-------------CGGAC--------GGACAGACGGATAGGCG---------AACGGTAC-G--ACGGACGGAC----ATGGGTAGCACTATA-C--TC---C----C------------------T-CACCAC--CA------CACC------CA----A----TG--GC--AATTT---CA----AGGCTGT--T---------GCATA-----A------------------ACA-A--T-AT-GTA----TCAGTA-TTA------AACATATAA--ATTGT-ATAAAT------TGTG-TA-AT-TTGCCA----T--AATA----TGT---tcat
gi|3 : atttattgccgcaacc------------------T-TA--AA--CA------TA-T------AA----A----TT--GT--A---T---AA----A-----T--T---------GTGTA-----AT------------TTGCCATA-A--T-AT-GTA----GGGATG-TTA------TAGAGAAGATGATTAC-CTAAAT------TTTGTTACATATTGCAA----C--AATA----TGT---C-A---CATATGGACCCTTAGTGTAACAA-AAT--AT-----TTACACTAAGGGTTGCGG-T-------GT--CAAC----CCCTGGTGTAagggatgttatagagaagatgattacctaaattttgttacatattgcaacaatatgtcacatatggacccttagtgtaacaaaatatttacactaagggttgcggtgtcaacccctggtgtaacagaaactgattgacaccgcaacccttagtgtaacagttgttacaattgttactgtttcactaagggttgcaacagacgtggcaaccagtacttacaagaatttaaacaatcatatattctaaacgtagacaatgtatcgtgaatgctatacagtatagatataagaacttgtaacttgtaagtcgaaataaacttctgtattt
gi|3 : atttattgccgcaaccgtaaatgacgttgaccttgacccgaaaatcgtgaaacacaaacgcatctgaagtctcactgttctgaacatctgtgtatcttacattggaggggaaataatactggtaagcgttgacagcgatttatcttagtgacattgaccttaacctgaaaatcgtgatgtacggaagaacggacggacagacggataggcgaacggtacgacggacggacatgggtagcactatactccctcaccaccacacccaatggcaatttcaaggctgttgcataaacaatatgtatcagtaT---------GTTACACTAAGGGTT--GC--GGTGT------CAATCAG--TTTCTGTTA-CA-C-----C-----A---------------G-------GG----G------------TT-----------G----A-------C---AC--CGC-----A-ACCCTTA--GTGT--------------AA-----------------ATA---------T---TTTGTTACACTAAGGGT-C----C---ATA----------T-GT---GACATATTGTT-GCAA------TATGTAACAAAATacagaaactgattgacaccgcaacccttagtgtaacagttgttacaattgttactgtttcactaagggttgcaacagacgtggcaaccagtacttacaagaatttaaacaatcatatattctaaacgtagacaatgtatcgtgaatgctatacagtatagatataagaacttgtaacttgtaagtcgaaataaacttctgtattt
gi|3 : atttattgccgcaaccgtaaatgacgttgaccttgacccgaaaatcgtgaaacacaaacgcatctgaagtctcactgttctgaacatctgtgtatcttacattggaggggaaataatactggtaagcgttgacagcgatttatcttagtgacattgaccttaacctgaaaatcgtgatgtacggaagaacggacggacagacggataggcgaacggtacgacggacggacatgggtagcactatactccctcaccaccacacccaatggcaatttcaaggctgttgcataaacaatatgtatcagtattaaacatataaattgtataaattgtgtaatttgccataatatgtagggatgttatagagaagatgattacctaaTTACACTAAGGGTT--GC--GGTGT------CAACCC---CTGGTGTAA-CA-G-----A-----AAC-------------T-------GA----T------------T------------G----A-------C---AC--CGC-----A-ACCCTTA--GTGTAAC--AGTTGTTAC-A-----------------AT-TGT------T---ACTGTTTCACTAAGGGT-TGCAACAG-ACGTGGCA---ACCAGTACTTACA-------AG-AA----TTTA---AAC--AATCATATATTCTAAACGTAGACAATGTA-TCG-TGAATGCTATACAGTATAGATATAAGAACTTGTAACTTGTAAGTgttgttacaattgttactgtttcactaagggttgcaacagacgtggcaaccagtacttacaagaatttaaacaatcatatattctaaacgtagacaatgtatcgtgaatgctatacagtatagatataagaacttgtaacttgtaagtcgaaataaacttctgtattt
gi|4 : atttattgccgcaaccgtaaatgacgttgaccttgacccgaaaatcgtgaaacacaaacgcatctgaagtctcactgttctgaacatctgtgtatcttacattggaggggaaataatactggtaagcgttgacagcgatttatcttagtgacattgaccttaacctgaaaatcgtgatgtacggaagaacggacggacagacggataggcgaacggtacgacggacggacatgggtagcactatactccctcaccaccacacccaatggcaatttcaaggctgttgcataaacaatatgtatcagtattaaacatataaattgtataaattgtgtaatttgccataatatgtagggatgttatagagaagatgattacctaaattttgttacatattgcaacaatatgtcacatatggacccttagtgtaacaaaatatAGAAAGAGAAAAATATCGAAACGACATGAATACCCCCTCCCTC---TATCTTTCTATTTTTTGCAAAcgaaataaacttctgtattt
gi|4 : TTTCTATTTTTTGCAAAGGTGAT------CTTGACTCAAGAA-TCCATAAGCGCAAACTCGTCCGAAGTATAT-TGTTTCTGAACACGTGTATGA------AGTTTCATCAAAATTGTATTAAAATAAGGTCGGTCGAGCGGTTACTGTGCTTTTCTG-CTAT-A-A-GTAACGATGAC--TGACTTTGACCAGAAAGTCGTGAggtgatcttgactcaagaatccataagcgcaaactcgtccgaagtatattgtttctgaacacgtgtatgaagtttcatcaaaattgtattaaaataaggtcggtcgagcggttactgtgcttttctgctataagtaacgatgactgactttgaccagaaagtcgtgaaacgctaacgtattcaaagtatctctgttctgaacatctgtaacttgcatgggatggaaaataatgccggtaaacgttgaaatcgattttctattttgagtaactgtgacgttgaccttgacctgaaaatcgttacgtacggaaggacggatggacgatacgcaaaagacggacatgggtagcactatatcccattcaccaccttaccccaacccccatgtcaagccggttgcataaataatacgtatcggtattaaacagatgaattgtataaattgtgtaatttgtcataatatgtagagataatatagagaagatgatttccttgattttgttacatatttcaacaatatgtcacatatcgcccttaagtgtaacaaaatatttttgttacactaacagttgcggtgacaagggagactttgttagtaaacgttttattaaatg
gi|4 : agaaagagaaaaatatcgaaacgacatgaataccccctccctctatcCGCAAACTC-GTCCGAAGTATATTGTTTCTGAACACGTGTATGAAGTTTCATCAAAATTGTATTAAAATAAGGTCGGTCGAGCGGTTACTGTGCTTTTCTGCTATAAGTAACGATGAC--TGACTTTGACCAGAAAG-TCGTGAAACGCTAACGTATTCAAAGTATCTCTG-TTCTGAACATC--TGT-A------ACTTGCATGGGA--TG---GAAAATAATGCCGGT-AAACGTTGAAATCGATTTTCTA-TT-T-TGA-GTAACTGTGACGTTGACCTTGACCTGAAAATCGTTACGTACGGA-------------A----------------------GGAC--------GGA------------TG---------GACGATAC-GCAAAAGACGGAC----ATGGGTAGCACTATATC--CC---A----T------------------T-C---AC--CA------CC-TTACCCCAA----C----CC--CC--A---TGTCAAGCCGG-----T--T---------GCATA-----A------------------ATA-A--T-AC-GTA----TCGGTA-TTA------AACAGATGA--ATTGT-ATAAAT------TGTG-TA-AT-TTGTCA----T--AATA----TGT---aacgctaacgtattcaaagtatctctgttctgaacatctgtaacttgcatgggatggaaaataatgccggtaaacgttgaaatcgattttctattttgagtaactgtgacgttgaccttgacctgaaaatcgttacgtacggaaggacggatggacgatacgcaaaagacggacatgggtagcactatatcccattcaccaccttaccccaacccccatgtcaagccggttgcataaataatacgtatcggtattaaacagatgaattgtataaattgtgtaatttgtcataatatgtagagataatatagagaagatgatttccttgattttgttacatatttcaacaatatgtcacatatcgcccttaagtgtaacaaaatatttttgttacactaacagttgcggtgacaagggagactttgttagtaaacgttttattaaatg
gi|4 : agaaagagaaaaatatcgaaacgacatgaataccccctccctctatctttctattttttgcaaaggtgatcttgactcaagaatccataag------------------T-TA--AA--CA------GA-T------GA----A----TT--GT--A---T---AA----A-----T--T---------GTGTA-----AT------------TTGTCATA-A--T-AT-GTA----GAGATA-ATA------TAGAGAAGATGATTTC-CTTGAT------TTTGTTACATATTTCAA----C--AATA----TGT---C-A---CATATCGCCCTTAAGTGTAACAA-AAT--ATTTTTGTTACACTAAagagataatatagagaagatgatttccttgattttgttacatatttcaacaatatgtcacatatcgcccttaagtgtaacaaaatatttttgttacactaacagttgcggtgacaagggagactttgttagtaaacgttttattaaatg
gi|4 : agaaagagaaaaatatcgaaacgacatgaataccccctccctctatctttctattttttgcaaaggtgatcttgactcaagaatccataagcgcaaactcgtccgaagtatattgtttctgaacacgtgtatgaagtttcatcaaaattgtattaaaataaggtcggtcgagcggttactgtgcttttctgctataagtaacgatgactgactttgaccagaaagtcgtgaaacgctaacgtattcaaagtatctctgttctgaacatctgtaacttgcatgggatggaaaataatgccggtaaacgttgaaatcgattttctattttgagtaactgtgacgttgaccttgacctgaaaatcgttacgtacggaaggacggatggacgatacgcaaaagacggacatgggtagcactatatcccattcaccaccttaccccaacccccatgtcaagccggttgcataaataatacgtatcggta-CA-AC----A-----A---------------T-------AT----G------------T------------C----A-------C---ATATCGC---------CCTTAA-GTGTAAC-----------AA-----------------A-ATAT------T---TTTGTTACACTAACAGT-TG---CGG-TGAC---A---AGG-G---AGAC-T-TTGTTAGTAAACGTTTTAT-TAAcagttgcggtgacaagggagactttgttagtaaacgttttattaaatg
gi|5 : agaaagagaaaaatatcgaaacgacatgaataccccctccctctatctttctattttttgcaaaggtgatcttgactcaagaatccataagcgcaaactcgtccgaagtatattgtttctgaacacgtgtatgaagtttcatcaaaattgtattaaaataaggtcggtcgagcggttactgtgcttttctgctataagtaacgatgactgactttgaccagaaagtcgtgaaacgctaacgtattcaaagtatctctgttctgaacatctgtaacttgcatgggatggaaaataatgccggtaaacgttgaaatcgattttctattttgagtaactgtgacgttgaccttgacctgaaaatcgttacgtacggaaggacggatggacgatacgcaaaagacggacatgggtagcactatatcccattcaccaccttaccccaacccccatgtcaagccggttgcataaataatacgtatcggtattaaacagatgaattgtataaattgtgtaatttgtcataatatgtagagataatatagagaagatgatttccttgattttgttacatattt------ATTTGCATCGGA--TG---CAAAGTAATACCCGT-AAGCGTTGACACCGATTTTCTA-----------------TGACATTGACCTTGTCCT-AAAATCGTGACGTACAGA-------------A-----G-AACGGG--------CGGAC--------AGA------------CGGATAGGCAAGACGGTAT-G--ACGGACGGAC----ATGGGTAGCAATATATC--CT---CACCAC------------------TGCA--AC--C-------CA-TTTC---AA----AGCGGTT--GC--A---C----G----G-----T--T---------GCGTA-----A------------------ACA-A--T-AT-ATA----atg
gi|5 : --A---T---AA----A-----T--T---------GTGTA-----AT------------TTGCCATA-C--T-AT-GTA----GGGATA-TTA------TAGAAAAGATAATTTC-CTAAAT------TGTGTTACATATTGCAA----C--AATA----TGT---C-G---CATATCGCCCCTTGGTGTAACAA-AAT--ATTTTTGTTACACTTAG------GG-T-------tcagaattaaacagataaattgtgtaatttgccatactatgtagggatattatagaaaagataatttcctaaattgtgttacatattgcaacaatatgtcgcatatcgccccttggtgtaacaaaatatttttgttacacttagggttgcggtgtaacataaactaattgtgttacactaagggttgcggtgtaacataaactaattttgttacactaagggttgcggaatcaacccttagtgtaacaattgtt
gi|5 : atttgcatcggatgcaaagtaatacccgtaagcgttgacaccgattttctatgacattgaccttgtcctaaaatcgtgacgtacagaagaacgggcggacagacggataggcaagacggtatgacggacggacatgggtagcaatatatcctcaccactgcaacccatttcaaagcggttgcacggttgcgtaaacaatatatatcagaattaaacagTT--ATG-T-TAC-A-CCGCAACCC---TTAGTGTAA-CA-C-----A-----A---------------T-------TA----GTT----------T------------ATGTTA-------C---AC--CGC-----A-ACCCTAA--GTGTAAC--A------A-AA-----------------ATA---------T---TTTGTTACACCAAGG----G--GCGATATGCG--ACATATT-GTtgcggtgtaacataaactaattgtgttacactaagggttgcggtgtaacataaactaattttgttacactaagggttgcggaatcaacccttagtgtaacaattgtt
gi|5 : atttgcatcggatgcaaagtaatacccgtaagcgttgacaccgattttctatgacattgaccttgtcctaaaatcgtgacgtacagaagaacgggcggacagacggataggcaagacggtatgacggacggacatgggtagcaatatatcctcaccactgcaacccatttcaaagcggttgcacggttgcgtaaacaatatatatcagaattaaacagataaattgtgtaatttgccatactatgtagggatattatagaaaagataatttcctaaattgtgttacatattgcaATATTTTT---------GTTACACTTAGGGTT--G------------CG------------GTGTAA-CATA-----A-----AC--------------T-------AATTGTG------------T------------T----A-------C---AC--T-------A-AGGGTTGCGGTGTAAC---------ATAA-----------------AC-TAA------T---TTTGTTACACTAAGGGT-TG--CGGA-ATactaattttgttacactaagggttgcggaatcaacccttagtgtaacaattgtt
gi|5 : atttgcatcggatgcaaagtaatacccgtaagcgttgacaccgattttctatgacattgaccttgtcctaaaatcgtgacgtacagaagaacgggcggacagacggataggcaagacggtatgacggacggacatgggtagcaatatatcctcaccactgcaacccatttcaaagcggttgcacggttgcgtaaacaatatatatcagaattaaacagataaattgtgtaatttgccatactatgtagggatattatagaaaagataatttcctaaattgtgttacatattgcaacaatatgtcgcatatcgccccttggtgtaacaaaTT---------GTTACACTAAGGGTTG-AT--T-------CCGCAACCC---TTAGTGTAA-CA-A-----A-----A---------------T-------TA----GTT----------T------------ATGTTA-------C---AC--CGC-----A-ACCCTTA--GTGTAAC---------ACAA-----------------TTA-GT------T---TATGTTACACcaacccttagtgtaacaattgtt
gi|6 : atttgcatcggatgcaaagtaatacccgtaagcgttgacaccgattttctatgacattgaccttgtcctaaaatcgtgacgtacagaagaacgggcggacagacggataggcaagacggtatgacggacggacatgggtagcaatatatcctcaccactgcaacccatttcaaagcggttgcacggttgcgtaaacaatatatatcagaattaaacagataaattgtgtaatttgccatactatgtagggatattatagaaaagataatttcctaaattgtgttacatattgcaacaatatgtcgcatatcgccccttggtgtaacaaaatatttttgttacacttagggttgcgCTC---TTAGTGTAA-CA-C-----A-----A---------------T-------CA----G------------TTTTTGTTACATTA----AGGGTTGTC---AT--CGC-----A-ATCCTTA--GTGTTAC--A------A-AA-----------------ACAT------------TTTGTTACACTAAGG----G--GC-A-ATA----------T-GT---GACATATTGTT-GCAA----TTTG--TAATAAAATttgtt
gi|6 : --A---T---AC----A-----T--T----------TGTA-----AT------------TTGCCATA-A--T-AT-GTA----GGGATA-TTA------TAGAGAAGACGATTTT-CTAAAT------TTTATTACAAATTGCAA----C--AATA----TGT---C-A---CATATTGCCCCTTAGTGTAACAA-AAT--GTTTTTGTAACACTAAGGATTGCGA-T-------GA--CAAC----CCTTAATGTAttagaaaatcgtcttctctataatatccctacatattatggcaaattacaaatgtatctgtttaatactgatacgtattgttaatgcaactgccttgaaatgggggtggcatggggagggttggtgaggggctaatatagtgctacccatgtccatctgttgtaccatccgtccatccgtctgtccacccgttgttctgtacataacaatttcagttacggtcagtatcactgctactataaatagaaaatccctgtcaacgtttacaagtattattttgcatcggata
gi|6 : ctcttagtgtaacacaatcagtttttgtATCCGA--TG---CAAAATAATACTTGT-AAACGTTGACAGGGATTTTCTA-TT-TAT-A-GTAGCAGTGATACTGACCGTAA-CTG-AAATTGTTATGTACAGAACAACGGGTGGACA-----G-A-------------CGGAT--------GGA------------CG---------GATGGTAC-A--ACAGATGGAC----ATGGGTAGCACTATATTAGCC---C----C------------------T-C---AC--CA------ctgtttaatactgatacgtattgttaatgcaactgccttgaaatgggggtggcatggggagggttggtgaggggctaatatagtgctacccatgtccatctgttgtaccatccgtccatccgtctgtccacccgttgttctgtacataacaatttcagttacggtcagtatcactgctactataaatagaaaatccctgtcaacgtttacaagtattattttgcatcggata
gi|7 : ctcttagtgtaacacaatcagtttttgttacattaagggttgtcatcgcaatccttagtgttacaaaaacattttgttacactaaggggcaatatgtgacatattgttgcaatttgtaataaaatttagaaaatcgtcttctctataatatccctacatattatggcaaattacaaatgtatctgtttaatactgatacgtattgttaatgcaactgccttgaaatgggggtggcatggggagggtTGAAGATCTGTTT-A------ACTTGCATCGGA--TG---CAAAATAATGCCGGT-AAGCGTTGACAGCGATTTTCTATTT-T-T-A-TCAACAATGGCATTAACCTTAACCTT-AAATCGTGACGTACGGA-------------A-----G-AAGGGGCGGACACTCGGAT--------AGA------------CG---------AACAGTAC-G--ACGGACGGAC----TTAGGTAGCATTATACC--CCCAAC----C------------------C-CA--CC--CAGCCCTTCT-C------AA----GC---TT--GC--A---T---AA----A-----CAAT---------ACGTATCAGTATTAAACAGATAAGTTG-TATA-AACT-GT-GTAATTTGCCATA-ATATG----TAGAAAAGGTGATTAC-CTAAGT------TTTGTTATATATTGCAA----C--AATA----TGT---C-T---CATATCGCACCTTAATGTAACAC-AAT--ATTTTTTTTACATTAAG------GG-T--------T--TAAT----GCTTa
gi|8 : TAACGGTT--AT--T-TAT-AACCACAACCC---TTAGTGTAA-CA-A-----A-----AA--------------T-------AA----G------------TTT----------A----A----------------GA-----A-AATCTTA--TTGTGAT--G------ATAA-----------------ATATAT------T---TTTGTCACACTAAGGGT-TG--ACGA-ATATG--A---ATT-GTATAGTCAT-TCATTAATAA----TTTGT-TAACAA-----CAGA--CCTAATGTTTACA---TACTTGTTGGCCCTTATAC-TTAA--------------------TGAAAGTTAATATGGTATAAATAATACAA-CCAACACGAAATGTAACACACACACCATATAAACATATTCCTA------TATTTAATCTAAGCAATTGTACAGTACAATTTCTTGATTTCATCAGAGATATAAAATACTATTATCTGTC-------TCATACATGTTCCTACCTAGTATATGAACAAAAGAACAGTTC-AACGTGTTACCTGTTCCCTTTTTAGCTtcactggaaatagttattgatactgtt
gi|9 : G---------GACAGTAC-G--ACGGACGGACGGAGATGGGTAGCACTATATC--CCAT-C----CCATTTTAAGACGGTGGTTT-AA--ACAACA------CG-T------AACAACA----TTAAACAAA---T---AA----A-----T--TGTATAAATTGTGTA-----AT------------TTGCTATA-A--T-AT-ATA----GAGATA-TCA------TAGAGAAGTTGAGTTC-TGAAAT------TTTGTTACATATTGCCA----CTTAGTT----TAA---CAA---AATAT-G----TT--TTTAACAA-AAT--ATGTTTGTTAAACTAAG------GG-TTGCA---GTTATAAC----CCCTAGTGT
gi|9 : ATATGTTT---------GTTAAACTAAGGGTTGCAG--T-TAT-------AACCC---CTAGTGTTA-CA-A-----AT----A---------------T--------------------------T------------G----A-------T---TT--TG-------------TA--GGGTAAC--A------A----------------------ATAT------TGAGTTTGTTACACTAAGGGA-TG--tacaaatattgattttgtagggtaacaaatattgagtttgttacactaagggatgttgttacattaaagccacaaagcatttacacacttgatatagtata
gi|9 : ggacagtacgacggacggacggagatgggtagcactatatcccatcccattttaagacggtggtttaaacaacacgtaacaacattaaacaaataaattgtataaattgtgtaatttgctataatatatagagatatcatagagaagttgagttctgaaattttgttacatattgccacttagtttaacaaaatatgtttttaacaaaA----TGT---A-A---CA-A-CATCCCTTAGTGTAACAA-ACTCAATATTTGTTACCCTAttgttacattaaagccacaaagcatttacacacttgatatagtata
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|17 ): AAAATGCTATGGTTAAAAAAAGCGGATTTTATAAAAATGATTTTTTGTCGGATTATCATGCGCGATAATAGCTATGTATGATTTGAGG
Unaligned ( gi|19 ): ACTAAAACGATCAATAGTAAAATTCATCAGATTGTTAAACAAGTATTAATGAAACA
Alignments
lowQualScore : 111111111 4444444444444444 8888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888 111 33333333333333333 1 1111 11 11 222 4444444444444444444 1 1 1 1 222222 3333333 11 1 222222 222 33 1 11 11 111111 11111 66666666666666666666666666666666666 11111111 22222222222222222222222 66666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666 22222222222222222222222 111111 111111 1111 111 333333333333333333333 1111
lowQualScore : 555555555 4444444444444444 0 666 2 2 4444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444 2 000 666 88888888888888888 1 2 5 2 2222 44 0 0 3 88 333 6 0 7 7 3333333333333333333 1 1 5 5 5 5 1 1 999999 1 1 2222222 66 1 5 1 888888 1 1 111 1 1 1 00 1 1 1 1 1 1 1 1 1 2 77 8 1 11 8 6 666666 66 9999 5 5 5 77777 2 6 88888888888888888888888888888888888 88888888 77777777777777777777777 4 66 9999 66 55555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555 44444444444444444444444 3 55 3 3 7777 0 4 777777 2 1 3 000000 3 5555 55 7777 555 4 222 5 44 3 88888 1 777777777777777777777 0000
lowQualScore : ......... ................ . ... . . ................................................................................................................................................................ . ... ... ................. . . . . .... .. . . . .. ... . . . . ................... . . . . . . . . ...... . . ....... .. . . . ...... . . ... . . . .. . . . . . . . . . . .. . . .. . . ...... .. .... . . . ..... . . ................................... ........ ....................... . .. .... .. ........................................................................................................... ....................... . .. . . .... . . ...... . . . ...... . .... .. .... ... . ... . .. . ..... . ..................... ....
lowQualScore : 444444444 6666666666666666 1 111 2 2 8888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888 5 666 222 11111111111111111 4 7 0 3 1111 00 8 8 7 33 333 7 7 3 3 3333333333333333333 0 0 5 0 0 0 0 0 000000 0 0 5555555 55 0 5 0 555555 0 0 000 0 0 0 55 0 0 0 0 0 0 0 0 0 8 00 0 0 00 0 7 444444 99 8888 0 0 0 44444 1 2 22222222222222222222222222222222222 11111111 22222222222222222222222 4 11 4444 99 55555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555 66666666666666666666666 6 00 6 6 7777 7 0 000000 3 0 6 555555 5 5555 00 1111 888 0 555 1 22 6 11111 4 000000000000000000000 6666
consensus : GAAAATCGTATTCCAGGGATAAGTATATTTTT---------GTTACACTAAGGGTT--AT--T-TAT-A-CCGCAACCC---TTAGTGTAA-CA-A-----A-----A---------------T-------AA----G------------T------------A----A-------C---AC--CGC-----A-ACCCTTA--GTGTAAC--G------ACAA-----------------ATATAT------T---TTTGTTACACTAAGGGT-TG--ACGA-ATACG--A---ATT-GTATAGACAT-TCGTTAGTAA----TTTAT-TAACAAAATCACAGA--CCAAACGTTTACA---TACTCGTTGGACCTTATACATTAAAGATGTAAGAA--TGTA--TTGAAAGTTAATNTGGCATAAATNATACAAGCCAACACGAAATGTAACACGCACACCNTATAANCATATTCCTAGTCCTATATTTNATCTAAGCAATTGTACAGTACAANTTCTTGATTTCACCAGAGATATAAAATACTATTATCTGTCTCTCATTTCATACATGTTCCTACCTAGTATATGANCGAAAGNACAGTTCAAANGTGTTACCTGTTCCCTTTNTAGCTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGAGAGAGAAAAATATCGAAACGACATGAATGCCCCCCNCCCCACACATCTTNCNATTNTTCGCAAACTCTGTCCGAGGTATNTTGNTTCTGAACACNTGCATGAAGTTTCATCAAAATTGNATTAAAANAAGGNCGGTCGAGCGGTNGCNGTGNTTTTCTGCTTTTAGTAACGATGACGTTGACCTTGACCCGAAAA-TCGTGAAACGCAAACGCATCCGAAGTATCTCTG-TTCTGAACATCTGTGT-A------ACTTGCATCGGA--TG---NAAAATAATGCCGGT-AAGCGTTGACAGCGATTTTCTA-TT-T-T-A-GTAACAGTGACATTGACCTTGACCTGAAAATCGTGACGTACGGA-------------A-----G-A-------------CGGAC--------GGA------------CG---------GACGGTAC-G--ACGGACGGAC----ATGGGTAGCACTATATC--CC---C----C------------------T-CA--AC--CA------CA-T------AA----A----TT--GC--A---T---AA----A-----T--T---------GCGTA-----AT------------TTGCCATA-A--T-AT-GTA----GGGATA-TTA------TAGAGAAGATGATTNC-CTAAAT------TTTGTTACATATTGCAA----C--AATA----TGT---C-A---CATATCGCCCCTTAGTGTAACAA-AAT--ATTTTTGTTACACTAAG------GG-T-------GT--CAAC----CCTTAGTGTA
Reference ( family-3843 ) : GAAAATCGTATTCCAGGGATAAGTATATTTTT---------GTTACACTAAGGGTT--AT--T-TAT-A-CCGCAACCC---TTAGTGTAA-CA-A-----A-----A---------------T-------AA----G------------T------------A----A-------C---AC--CGC-----A-ACCCTTA--GTGTAAC--G------ACAA-----------------ATATAT------T---TTTGTTACACTAAGGGT-TG--ACGA-ATACG--A---ATT-GTATAGACAT-TCGTTAGTAA----TTTAT-TAACAAAATCACAGA--CCAAACGTTTACA---TACTCGTTGGACCTTATACATTAAAGATGTAAGAA--TGTA--TTGAAAGTTAATNTGGCATAAATNATACAAGCCAACACGAAATGTAACACGCACACCNTATAANCATATTCCTAGTCCTATATTTNATCTAAGCAATTGTACAGTACAANTTCTTGATTTCACCAGAGATATAAAATACTATTATCTGTCTCTCATTTCATACATGTTCCTACCTAGTATATGANCGAAAGNACAGTTCAAANGTGTTACCTGTTCCCTTTNTAGCTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGAGAGAGAAAAATATCGAAACGACATGAATGCCCCCCNCCCCACACATCTTNCNATTNTTCGCAAACTCTGTCCGAGGTATNTTGNTTCTGAACACNTGCATGAAGTTTCATCAAAATTGNATTAAAANAAGGNCGGTCGAGCGGTNGCNGTGNTTTTCTGCTTTTAGTAACGATGACGTTGACCTTGACCCGAAAA-TCGTGAAACGCAAACGCATCCGAAGTATCTCTG-TTCTGAACATCTGTGT-A------ACTTGCATCGGA--TG---NAAAATAATGCCGGT-AAGCGTTGACAGCGATTTTCTA-TT-T-T-A-GTAACAGTGACATTGACCTTGACCTGAAAATCGTGACGTACGGA-------------A-----G-A-------------CGGAC--------GGA------------CG---------GACGGTAC-G--ACGGACGGAC----ATGGGTAGCACTATATC--CC---C----C------------------T-CA--AC--CA------CA-T------AA----A----TT--GC--A---T---AA----A-----T--T---------GCGTA-----AT------------TTGCCATA-A--T-AT-GTA----GGGATA-TTA------TAGAGAAGATGATTNC-CTAAAT------TTTGTTACATATTGCAA----C--AATA----TGT---C-A---CATATCGCCCCTTAGTGTAACAA-AAT--ATTTTTGTTACACTAAG------GG-T-------GT--CAAC----CCTTAGTGTA
gi|1 : GAGAATCTTATTCCAGGGATAGGTATATCTTT---------GTTACACTAAGGGTT--AT--T-TAT-AACTGCAACCC---TTAGTGTAA-CA-A-----A-----A---------------T-------AA----G------------T------------A----A-------C---AC--AAT-----A-AGTTTTG--ATAAGAC--G------ATAA-----------------GTATAT------T---TTTGTTACACTAAGGGT-AG--ACGA-ATATG--A---ATT-GTATAGTCAT-TCATTAGTAA----TTTAT-TTACAAAATTACAGA--CCAAACGTTTACA---TACTTGTTGGACCTTATGTATTAAAAATGTAAAAA--TGTA--TTAAAAATTAATTTGACATAAATTAT-CAAGCCAACACAAAAT-TAA-ATGTACACTTTATAATCATATTCCTAGTCCTATATTTTATCTAAGCAATTGTACAGTACAAGTTCTTGATTTCACCAGAGATATAAAATACTATTATCTGTCTCTCATTTCATACATGTTCCTACCTAGTATATG-TCGAAAATACAGTTCAAAAGTGTTACTT------TTTGTAGCT
gi|1 : AAAGAGAGAAAAATATCAAAACGACATGAATGTCCCCCACCCCACACATCTTACAATTGTTCGCAAACT-TGTCCGAGGTATCTTGGTTCTGAACACCTACATGAAGTTTCATCAAAATTGGATTAAAAGAAGGGCAGTCAAGCGGTAGCGGTGATTTTCTGCTTTTAGTAATGATGACATTGACCTTGACCCGAAAAATCGTGAAATGCAAACGCATCCGAATTATCTCTG-TTCTGAACATCTGTGT-ATTTGTTACTTGCATCTGA--TG---GGAAATAATGCCGGT-AATTGTTGACAGCAATTTTCTA-TT-T-T-ATGTAACAGTGACATTGACCTTGACCTGAAAATCGTGATTTACGAA-------------A-----A-A-------------CAGAA--------GGA------------CA---------GACGGCAC-G--ACAGACGGAC----ATGGGTAGCACTATATC--TC---C----C------------------T-CA--AC--CA------TA-T------AA----A----TT--GT--A---T---AA----A-----T--T---------GTGAA-----AT------------TTGCCATA-A--TAAT-GCA----GGGATA-TTA------TAGAGAAGATGATTAA-CTAAAT------TTTGTTGCATATTGCAA----C--AATA----TGT---C-A---CAAATAGCCCTTTAGTGAAACAA-AAC--ATTTTTGTTACACTAAG------GG-T-------GT--CAAC----CCTTAGTGTAacaatttagtaatacctcatgattcatgactaatccctttccaaaataaccaaaacattcactgaaataatgttttgtttgtaagacttcttacttttctttttataattatcatttttccaatcttccacagcatatttacagtcacatttgttagttaaaatatacacgaaaaaaagagagaaaaatatcaaaacgacatgaatgtcccccaccccacacatcttacaattgttcgcaaacttgtccgaggtatcttggttctgaacacctacatgaagtttcatcaaaattggattaaaagaagggcagtcaagcggtagcggtgattttctgcttttagtaatgatgacattgaccttgacccgaaaaatcgtgaaatgcaaacgcatccgaattatctctgttctgaacatctgtgtatttgttacttgcatctgatgggaaataatgccggtaattgttgacagcaattttctattttatgtaacagtgacattgaccttgacctgaaaatcgtgatttacgaaaaacagaaggacagacggcacgacagacggacatgggtagcactatatctccctcaaccatataaattgtataaattgtgaaatttgccataataatgcagggatattatagagaagatgattaactaaattttgttgcatattgcaacaatatgtcacaaatagccctttagtgaaacaaaacatttttgttacactaagggtgtcaacccttagtgtaccca
gi|10 : gagaatcttattccagggataggtatatctttgttacactaagggttatttataactgcaacccttagtgtaacaaaataagtaacacaataagttttgataagacgataagtatatttttgttacactaagggtagacgaatatgaattgtatagtcattcattagtaatttatttacaaaattacagaccaaacgtttacatacttgttggaccttatgtattaaaaatgtaaaaatgtattaaaaattaatttgacataaattatcaagccaacacaaaattaaatgtacactttataatcatattcctagtcctatattttatctaagcaattgtacagtacaagttcttgatttcaccagagatataaaatactattatctgtctctcatttcatacatgttcctacctagtatatgtcgaaaatacagttcaaaagtgttactttttgtagctacaatttagtaatacctcatgattcatgactaatccctttccaaaataaccaaaacattcactgaaataatgttttgtttgtaagacttcttacttttctttttataattatcatttttccaatcttccacagcatatttacagtcacatttgttagttaaaatatacacgaaaaACGC---TTAGTGTAA-CA-AC----A-----A---------------TTGTTTCTAA----GGGT---------T------------G----A-------C---AC--CGT-----A-ACC-TTA--GTGTATC-----------AA-----------------AAATGT------T---TTTGTTATACTAAGGGT-TGCCACAA-Accca
gi|10 : tattgtatttatattcgtcataccattgtttatagaatgttatggttataaaaaagcggattttatgccggattatcatgatcaataatagctatgtatgcA-----AT------------TT--CGTACA--T-ATAGCA----GGGATAATTAAATTTCTAAAAGAAATG-TTACACTAAATGAACCCTTT-TTATA-AT--CAAATGTC--AATA----CATGAAC-AAAACATA-CGC---TTAGTGTAACAACAAT---TGTTT------CTAAG------GGTT-------GA--CACCGTAACCTTAGTGTAatgttttgttcatgtattgacatttgattataaaaagggttcatttagtgtaacatttcttttagaaatttaattatccctgctatatgtacgaaattggagcatatagtttt
gi|10 : tattgtatttatattcgtcataccattgtttatagaatgttatggttataaaaaagcggattttatgccggattatcatgatcaataatagctatgtatgctttgtggcaacccttagtataacaaaaacatttttgaCAGGGATAATTAAATTTCTAAAAGAAATGTTACACTAA--------------AT-G-----AACCC---TTTTTATAATCA-AATGTCA-----A---------------T-------AC----A------------TG-----------A----A-------C---AA--AAC-----ATACGCTTA--GTGTAAC--A------ACAA----------------------------------TTGTT--TCTAAGGGT-TG--ACggagcatatagtttt
gi|11 : tattgtatttatattcgtcataccattgtttatagaatgttatggttataaaaaagcggattttatgccggattatcatgatcaataatagctatgtatgctttgtggcaacccttagtataacaaaaacatttttgatacactaaggttacggtGAAAATCGTGTTTCGGCGACAAGTATATGTTT---------GTTTTACTAAGGGTT--AT--T-TATAA-CCGCAAACA---TTAGTGTAA-GG-A-----A-----A---------------T-------AA----G------------T------------ctatatgtacgaaattggagcatatagtttt
gi|12 : tnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaaattacacaaattaaagcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaGAAAATCGTATTCCAAAGATAAGTATATTTTC---------GTTACACTAAGGGTT--GT--T-TACAA-CTGCAACCC---TT
gi|13 : nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaTT---------GTTACACTAAGAGTT--AC--G-T------TGCGGTCC---TAAGTGTAA-CA-A-----A-----ACCCATTTTGTTACACT-------AA----G------------G------------A----T-------CGCAAC--CGT-----A-ACCCTAA--GTGTAAC--G------AAAA-----------------A-ACCTAAGGGGT---TTTGTTTCACTAAGAGT-T
gi|13 : ggtTTTTC---------GTTACACTTAGGGTT--ACGGT-T-------GCGATCC---TTAGTGTAA-CA-A-----A-----A---------------T-------GG----GTTTTGTTACACTT------------A----G-------G---AC--CGCAACGTA-ACTCTTA--GTGTAAC--A------ACA----------------------------------CTTGTTACACTAAGCGTATG--TTTG-GCACA--------T-GTATAGACAT-TTGATAATAA----cacttgttacactaagcgtatgtttggcacatgtatagacatttgataataaaacgggttctctaagtaaaaccttttttaactagaaatttatttatccctgctatgaaatg
gi|13 : ggtaactcttagtgaaacaaaaccccttaggttCAGGGATAAATAAATTTCTA--------GTTAAA--AAAGGTTTTAC--T-TAG-A---G-AACCCGTTTTATTAT---CA-A-----ATGTCTA---------------T-------AC----A------------TGTGCCA------A----A-------C---AT------------ACGCTTA--GTGTAAC-----------AA-----------------GTGT--------------TGTTACACTAAGAGT-T---ACGaacgggttctctaagtaaaaccttttttaactagaaatttatttatccctgctatgaaatg
gi|14 : ggtaactcttagtgaaacaaaaccccttaggttttttcgttacacttagggttacggttgcgatccttagtgtaacaaaatgggttttgttacacttaggaccgcaaCATTGACCTTGACTTGAAAA-TCGTGAAACGCCTCCGCATCTGTAGTATC-------------ATCTGTGT-A------ACTTGCATCGGA--CG---GAAAATAATGCCGGT-AAGCATTGACAGCGATTTTCTA-TT-T-TAA-GTATCAGTGATATTGACCTTGACCTGCAAATCGTAACGTACGGA-------------AAAATGG-A-------------CAGACAAACGTATGGG------------CG---------AACGGTAC-G--ACAGACGGAC----AGGTGTAGCACTATATT--TC---C----C------------------ctatgaaatg
gi|15 : C---TTAGTGTAA-CA-ATTAC-A-----T---------------T-------AA----GGAT---------T------------G----A-------C---AC--CGC-----A-ACCTTCA--GTGTAAC--A------Acat
gi|15 : t-CTGAAT------CT-GTTGTATAAT-CAAATGTC--AATACATGTAT---C-AAA-CATAT-GC---TTAGTGTAACAA-------------TTACATTAAG------GA-TTGACACCG---CAAC----CTTCAGTGTAcatatgtttgatacatgtattgacatttgattatacaacagattcagttagggttataatgtttgttcaactagaaatttatcctgctatggaatggggacatatggtgt
gi|16 : tttgt------GA-T-------GT--CAAC----CCTTAGTGTAttagggttataatgtttgttcaactagaaatttatcctgctatggaatggggacatatggtgt
gi|16 : atgcATGTCAACCCTTAGTGTAACA----------TTTGTTACAacatttgttacatgtattggcatttgattataaaacaggttcatttagtgtaacaattttttttttttaaacttagaaatttatttatccct
gi|16 : atgcgTGTTACACTAAGGGT-TG--ACtgtattggcatttgattataaaacaggttcatttagtgtaacaattttttttttttaaacttagaaatttatttatccct
gi|18 : atgcgatGAAATTCTTATTCCAGGGAAAGGAATATTTT----------GTTACACCAAGGGTT--AT--T-TAT-A-CCGCAAtttgttacatgtattggcatttgattataaaacaggttcatttagtgtaacaattttttttttttaaacttagaaatttatttatccct
gi|2 : aGAACATCGTACTTCTTTGATAAATATATTTTT---------GTTACACTAAGGATT--AT--T-TNN-N-NNNNNNNNN---NNNNNNNNN-NN-N-----N-----N---------------N-------NN----N------------N------------N----N-------N---NN--NNN-----N-NNNNNNN--NNNNNNNAAG------ACAATCTTATTTCTTTGATAAATATAG------T---TTTGTTACACTAAGGGT-T
gi|20 : tagagtaatgctatattagtaatagcatcatcttgagttataattgtcagaaaaggaatacttatgttgcatggggaaggggggtcgagattcagggagaaaagggtcaataacaagttcatcaaaattagaataatgcataaatactttcatttgtcactcattaatagttgtatcctgtttctcagatgttcaactcttgaaagtgacatagcgcgctctagttttattttggttttaaaactgcttcattttgtcaccatcgttataaaagcattcatctaaaagtaggctgacatcgcaatatatcataaaatgtgttttatcttggacatttgtagttatggaacattactaatacaattatcttagtgaaaataaataacattaacgaagagtaagtagactcatatcatctcaaactcttgtttaaaaaacgtaaataaacaaacttatataaaattacgaatctcctttaaatcttcggttttccacttcattattttaagttatttaccagtgttaagaaaaccgtccaacaaagtttttctaagggttgtttnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaaCGGC-------------A-----G-A-------------CAGAC--------GGA------------CG---------GACGA-ACGG--ACGGACGGAC----AGTGATAACATTGTa
gi|3 : GTAA--ATGACGTTGACCTTGACCCGAAAA-TCGTGAAACACAAACGCATCTGAAGTCTCACTG-TTCTGAACATCTGTGT-A------TCTTACATTGGA--GG---GGAAATAATACTGGT-AAGCGTTGACAGCGATT---TA-TC-T-T--------AGTGACATTGACCTTAACCTGAAAATCGTGATGTACGGA-------------A-----GAA-------------CGGAC--------GGACAGACGGATAGGCG---------AACGGTAC-G--ACGGACGGAC----ATGGGTAGCACTATA-C--TC---C----C------------------T-CACCAC--CA------CACC------CA----A----TG--GC--AATTT---CA----AGGCTGT--T---------GCATA-----A------------------ACA-A--T-AT-GTA----TCAGTA-TTA------AACATATAA--ATTGT-ATAAAT------TGTG-TA-AT-TTGCCA----T--AATA----TGT---tcat
gi|3 : atttattgccgcaacc------------------T-TA--AA--CA------TA-T------AA----A----TT--GT--A---T---AA----A-----T--T---------GTGTA-----AT------------TTGCCATA-A--T-AT-GTA----GGGATG-TTA------TAGAGAAGATGATTAC-CTAAAT------TTTGTTACATATTGCAA----C--AATA----TGT---C-A---CATATGGACCCTTAGTGTAACAA-AAT--AT-----TTACACTAAGGGTTGCGG-T-------GT--CAAC----CCCTGGTGTAagggatgttatagagaagatgattacctaaattttgttacatattgcaacaatatgtcacatatggacccttagtgtaacaaaatatttacactaagggttgcggtgtcaacccctggtgtaacagaaactgattgacaccgcaacccttagtgtaacagttgttacaattgttactgtttcactaagggttgcaacagacgtggcaaccagtacttacaagaatttaaacaatcatatattctaaacgtagacaatgtatcgtgaatgctatacagtatagatataagaacttgtaacttgtaagtcgaaataaacttctgtattt
gi|3 : atttattgccgcaaccgtaaatgacgttgaccttgacccgaaaatcgtgaaacacaaacgcatctgaagtctcactgttctgaacatctgtgtatcttacattggaggggaaataatactggtaagcgttgacagcgatttatcttagtgacattgaccttaacctgaaaatcgtgatgtacggaagaacggacggacagacggataggcgaacggtacgacggacggacatgggtagcactatactccctcaccaccacacccaatggcaatttcaaggctgttgcataaacaatatgtatcagtaT---------GTTACACTAAGGGTT--GC--GGTGT------CAATCAG--TTTCTGTTA-CA-C-----C-----A---------------G-------GG----G------------TT-----------G----A-------C---AC--CGC-----A-ACCCTTA--GTGT--------------AA-----------------ATA---------T---TTTGTTACACTAAGGGT-C----C---ATA----------T-GT---GACATATTGTT-GCAA------TATGTAACAAAATacagaaactgattgacaccgcaacccttagtgtaacagttgttacaattgttactgtttcactaagggttgcaacagacgtggcaaccagtacttacaagaatttaaacaatcatatattctaaacgtagacaatgtatcgtgaatgctatacagtatagatataagaacttgtaacttgtaagtcgaaataaacttctgtattt
gi|3 : atttattgccgcaaccgtaaatgacgttgaccttgacccgaaaatcgtgaaacacaaacgcatctgaagtctcactgttctgaacatctgtgtatcttacattggaggggaaataatactggtaagcgttgacagcgatttatcttagtgacattgaccttaacctgaaaatcgtgatgtacggaagaacggacggacagacggataggcgaacggtacgacggacggacatgggtagcactatactccctcaccaccacacccaatggcaatttcaaggctgttgcataaacaatatgtatcagtattaaacatataaattgtataaattgtgtaatttgccataatatgtagggatgttatagagaagatgattacctaaTTACACTAAGGGTT--GC--GGTGT------CAACCC---CTGGTGTAA-CA-G-----A-----AAC-------------T-------GA----T------------T------------G----A-------C---AC--CGC-----A-ACCCTTA--GTGTAAC--AGTTGTTAC-A-----------------AT-TGT------T---ACTGTTTCACTAAGGGT-TGCAACAG-ACGTGGCA---ACCAGTACTTACA-------AG-AA----TTTA---AAC--AATCATATATTCTAAACGTAGACAATGTA-TCG-TGAATGCTATACAGTATAGATATAAGAACTTGTAACTTGTAAGTgttgttacaattgttactgtttcactaagggttgcaacagacgtggcaaccagtacttacaagaatttaaacaatcatatattctaaacgtagacaatgtatcgtgaatgctatacagtatagatataagaacttgtaacttgtaagtcgaaataaacttctgtattt
gi|4 : atttattgccgcaaccgtaaatgacgttgaccttgacccgaaaatcgtgaaacacaaacgcatctgaagtctcactgttctgaacatctgtgtatcttacattggaggggaaataatactggtaagcgttgacagcgatttatcttagtgacattgaccttaacctgaaaatcgtgatgtacggaagaacggacggacagacggataggcgaacggtacgacggacggacatgggtagcactatactccctcaccaccacacccaatggcaatttcaaggctgttgcataaacaatatgtatcagtattaaacatataaattgtataaattgtgtaatttgccataatatgtagggatgttatagagaagatgattacctaaattttgttacatattgcaacaatatgtcacatatggacccttagtgtaacaaaatatAGAAAGAGAAAAATATCGAAACGACATGAATACCCCCTCCCTC---TATCTTTCTATTTTTTGCAAAcgaaataaacttctgtattt
gi|4 : TTTCTATTTTTTGCAAAGGTGAT------CTTGACTCAAGAA-TCCATAAGCGCAAACTCGTCCGAAGTATAT-TGTTTCTGAACACGTGTATGA------AGTTTCATCAAAATTGTATTAAAATAAGGTCGGTCGAGCGGTTACTGTGCTTTTCTG-CTAT-A-A-GTAACGATGAC--TGACTTTGACCAGAAAGTCGTGAggtgatcttgactcaagaatccataagcgcaaactcgtccgaagtatattgtttctgaacacgtgtatgaagtttcatcaaaattgtattaaaataaggtcggtcgagcggttactgtgcttttctgctataagtaacgatgactgactttgaccagaaagtcgtgaaacgctaacgtattcaaagtatctctgttctgaacatctgtaacttgcatgggatggaaaataatgccggtaaacgttgaaatcgattttctattttgagtaactgtgacgttgaccttgacctgaaaatcgttacgtacggaaggacggatggacgatacgcaaaagacggacatgggtagcactatatcccattcaccaccttaccccaacccccatgtcaagccggttgcataaataatacgtatcggtattaaacagatgaattgtataaattgtgtaatttgtcataatatgtagagataatatagagaagatgatttccttgattttgttacatatttcaacaatatgtcacatatcgcccttaagtgtaacaaaatatttttgttacactaacagttgcggtgacaagggagactttgttagtaaacgttttattaaatg
gi|4 : agaaagagaaaaatatcgaaacgacatgaataccccctccctctatcCGCAAACTC-GTCCGAAGTATATTGTTTCTGAACACGTGTATGAAGTTTCATCAAAATTGTATTAAAATAAGGTCGGTCGAGCGGTTACTGTGCTTTTCTGCTATAAGTAACGATGAC--TGACTTTGACCAGAAAG-TCGTGAAACGCTAACGTATTCAAAGTATCTCTG-TTCTGAACATC--TGT-A------ACTTGCATGGGA--TG---GAAAATAATGCCGGT-AAACGTTGAAATCGATTTTCTA-TT-T-TGA-GTAACTGTGACGTTGACCTTGACCTGAAAATCGTTACGTACGGA-------------A----------------------GGAC--------GGA------------TG---------GACGATAC-GCAAAAGACGGAC----ATGGGTAGCACTATATC--CC---A----T------------------T-C---AC--CA------CC-TTACCCCAA----C----CC--CC--A---TGTCAAGCCGG-----T--T---------GCATA-----A------------------ATA-A--T-AC-GTA----TCGGTA-TTA------AACAGATGA--ATTGT-ATAAAT------TGTG-TA-AT-TTGTCA----T--AATA----TGT---aacgctaacgtattcaaagtatctctgttctgaacatctgtaacttgcatgggatggaaaataatgccggtaaacgttgaaatcgattttctattttgagtaactgtgacgttgaccttgacctgaaaatcgttacgtacggaaggacggatggacgatacgcaaaagacggacatgggtagcactatatcccattcaccaccttaccccaacccccatgtcaagccggttgcataaataatacgtatcggtattaaacagatgaattgtataaattgtgtaatttgtcataatatgtagagataatatagagaagatgatttccttgattttgttacatatttcaacaatatgtcacatatcgcccttaagtgtaacaaaatatttttgttacactaacagttgcggtgacaagggagactttgttagtaaacgttttattaaatg
gi|4 : agaaagagaaaaatatcgaaacgacatgaataccccctccctctatctttctattttttgcaaaggtgatcttgactcaagaatccataag------------------T-TA--AA--CA------GA-T------GA----A----TT--GT--A---T---AA----A-----T--T---------GTGTA-----AT------------TTGTCATA-A--T-AT-GTA----GAGATA-ATA------TAGAGAAGATGATTTC-CTTGAT------TTTGTTACATATTTCAA----C--AATA----TGT---C-A---CATATCGCCCTTAAGTGTAACAA-AAT--ATTTTTGTTACACTAAagagataatatagagaagatgatttccttgattttgttacatatttcaacaatatgtcacatatcgcccttaagtgtaacaaaatatttttgttacactaacagttgcggtgacaagggagactttgttagtaaacgttttattaaatg
gi|4 : agaaagagaaaaatatcgaaacgacatgaataccccctccctctatctttctattttttgcaaaggtgatcttgactcaagaatccataagcgcaaactcgtccgaagtatattgtttctgaacacgtgtatgaagtttcatcaaaattgtattaaaataaggtcggtcgagcggttactgtgcttttctgctataagtaacgatgactgactttgaccagaaagtcgtgaaacgctaacgtattcaaagtatctctgttctgaacatctgtaacttgcatgggatggaaaataatgccggtaaacgttgaaatcgattttctattttgagtaactgtgacgttgaccttgacctgaaaatcgttacgtacggaaggacggatggacgatacgcaaaagacggacatgggtagcactatatcccattcaccaccttaccccaacccccatgtcaagccggttgcataaataatacgtatcggta-CA-AC----A-----A---------------T-------AT----G------------T------------C----A-------C---ATATCGC---------CCTTAA-GTGTAAC-----------AA-----------------A-ATAT------T---TTTGTTACACTAACAGT-TG---CGG-TGAC---A---AGG-G---AGAC-T-TTGTTAGTAAACGTTTTAT-TAAcagttgcggtgacaagggagactttgttagtaaacgttttattaaatg
gi|5 : agaaagagaaaaatatcgaaacgacatgaataccccctccctctatctttctattttttgcaaaggtgatcttgactcaagaatccataagcgcaaactcgtccgaagtatattgtttctgaacacgtgtatgaagtttcatcaaaattgtattaaaataaggtcggtcgagcggttactgtgcttttctgctataagtaacgatgactgactttgaccagaaagtcgtgaaacgctaacgtattcaaagtatctctgttctgaacatctgtaacttgcatgggatggaaaataatgccggtaaacgttgaaatcgattttctattttgagtaactgtgacgttgaccttgacctgaaaatcgttacgtacggaaggacggatggacgatacgcaaaagacggacatgggtagcactatatcccattcaccaccttaccccaacccccatgtcaagccggttgcataaataatacgtatcggtattaaacagatgaattgtataaattgtgtaatttgtcataatatgtagagataatatagagaagatgatttccttgattttgttacatattt------ATTTGCATCGGA--TG---CAAAGTAATACCCGT-AAGCGTTGACACCGATTTTCTA-----------------TGACATTGACCTTGTCCT-AAAATCGTGACGTACAGA-------------A-----G-AACGGG--------CGGAC--------AGA------------CGGATAGGCAAGACGGTAT-G--ACGGACGGAC----ATGGGTAGCAATATATC--CT---CACCAC------------------TGCA--AC--C-------CA-TTTC---AA----AGCGGTT--GC--A---C----G----G-----T--T---------GCGTA-----A------------------ACA-A--T-AT-ATA----atg
gi|5 : --A---T---AA----A-----T--T---------GTGTA-----AT------------TTGCCATA-C--T-AT-GTA----GGGATA-TTA------TAGAAAAGATAATTTC-CTAAAT------TGTGTTACATATTGCAA----C--AATA----TGT---C-G---CATATCGCCCCTTGGTGTAACAA-AAT--ATTTTTGTTACACTTAG------GG-T-------tcagaattaaacagataaattgtgtaatttgccatactatgtagggatattatagaaaagataatttcctaaattgtgttacatattgcaacaatatgtcgcatatcgccccttggtgtaacaaaatatttttgttacacttagggttgcggtgtaacataaactaattgtgttacactaagggttgcggtgtaacataaactaattttgttacactaagggttgcggaatcaacccttagtgtaacaattgtt
gi|5 : atttgcatcggatgcaaagtaatacccgtaagcgttgacaccgattttctatgacattgaccttgtcctaaaatcgtgacgtacagaagaacgggcggacagacggataggcaagacggtatgacggacggacatgggtagcaatatatcctcaccactgcaacccatttcaaagcggttgcacggttgcgtaaacaatatatatcagaattaaacagTT--ATG-T-TAC-A-CCGCAACCC---TTAGTGTAA-CA-C-----A-----A---------------T-------TA----GTT----------T------------ATGTTA-------C---AC--CGC-----A-ACCCTAA--GTGTAAC--A------A-AA-----------------ATA---------T---TTTGTTACACCAAGG----G--GCGATATGCG--ACATATT-GTtgcggtgtaacataaactaattgtgttacactaagggttgcggtgtaacataaactaattttgttacactaagggttgcggaatcaacccttagtgtaacaattgtt
gi|5 : atttgcatcggatgcaaagtaatacccgtaagcgttgacaccgattttctatgacattgaccttgtcctaaaatcgtgacgtacagaagaacgggcggacagacggataggcaagacggtatgacggacggacatgggtagcaatatatcctcaccactgcaacccatttcaaagcggttgcacggttgcgtaaacaatatatatcagaattaaacagataaattgtgtaatttgccatactatgtagggatattatagaaaagataatttcctaaattgtgttacatattgcaATATTTTT---------GTTACACTTAGGGTT--G------------CG------------GTGTAA-CATA-----A-----AC--------------T-------AATTGTG------------T------------T----A-------C---AC--T-------A-AGGGTTGCGGTGTAAC---------ATAA-----------------AC-TAA------T---TTTGTTACACTAAGGGT-TG--CGGA-ATactaattttgttacactaagggttgcggaatcaacccttagtgtaacaattgtt
gi|5 : atttgcatcggatgcaaagtaatacccgtaagcgttgacaccgattttctatgacattgaccttgtcctaaaatcgtgacgtacagaagaacgggcggacagacggataggcaagacggtatgacggacggacatgggtagcaatatatcctcaccactgcaacccatttcaaagcggttgcacggttgcgtaaacaatatatatcagaattaaacagataaattgtgtaatttgccatactatgtagggatattatagaaaagataatttcctaaattgtgttacatattgcaacaatatgtcgcatatcgccccttggtgtaacaaaTT---------GTTACACTAAGGGTTG-AT--T-------CCGCAACCC---TTAGTGTAA-CA-A-----A-----A---------------T-------TA----GTT----------T------------ATGTTA-------C---AC--CGC-----A-ACCCTTA--GTGTAAC---------ACAA-----------------TTA-GT------T---TATGTTACACcaacccttagtgtaacaattgtt
gi|6 : atttgcatcggatgcaaagtaatacccgtaagcgttgacaccgattttctatgacattgaccttgtcctaaaatcgtgacgtacagaagaacgggcggacagacggataggcaagacggtatgacggacggacatgggtagcaatatatcctcaccactgcaacccatttcaaagcggttgcacggttgcgtaaacaatatatatcagaattaaacagataaattgtgtaatttgccatactatgtagggatattatagaaaagataatttcctaaattgtgttacatattgcaacaatatgtcgcatatcgccccttggtgtaacaaaatatttttgttacacttagggttgcgCTC---TTAGTGTAA-CA-C-----A-----A---------------T-------CA----G------------TTTTTGTTACATTA----AGGGTTGTC---AT--CGC-----A-ATCCTTA--GTGTTAC--A------A-AA-----------------ACAT------------TTTGTTACACTAAGG----G--GC-A-ATA----------T-GT---GACATATTGTT-GCAA----TTTG--TAATAAAATttgtt
gi|6 : --A---T---AC----A-----T--T----------TGTA-----AT------------TTGCCATA-A--T-AT-GTA----GGGATA-TTA------TAGAGAAGACGATTTT-CTAAAT------TTTATTACAAATTGCAA----C--AATA----TGT---C-A---CATATTGCCCCTTAGTGTAACAA-AAT--GTTTTTGTAACACTAAGGATTGCGA-T-------GA--CAAC----CCTTAATGTAttagaaaatcgtcttctctataatatccctacatattatggcaaattacaaatgtatctgtttaatactgatacgtattgttaatgcaactgccttgaaatgggggtggcatggggagggttggtgaggggctaatatagtgctacccatgtccatctgttgtaccatccgtccatccgtctgtccacccgttgttctgtacataacaatttcagttacggtcagtatcactgctactataaatagaaaatccctgtcaacgtttacaagtattattttgcatcggata
gi|6 : ctcttagtgtaacacaatcagtttttgtATCCGA--TG---CAAAATAATACTTGT-AAACGTTGACAGGGATTTTCTA-TT-TAT-A-GTAGCAGTGATACTGACCGTAA-CTG-AAATTGTTATGTACAGAACAACGGGTGGACA-----G-A-------------CGGAT--------GGA------------CG---------GATGGTAC-A--ACAGATGGAC----ATGGGTAGCACTATATTAGCC---C----C------------------T-C---AC--CA------ctgtttaatactgatacgtattgttaatgcaactgccttgaaatgggggtggcatggggagggttggtgaggggctaatatagtgctacccatgtccatctgttgtaccatccgtccatccgtctgtccacccgttgttctgtacataacaatttcagttacggtcagtatcactgctactataaatagaaaatccctgtcaacgtttacaagtattattttgcatcggata
gi|7 : ctcttagtgtaacacaatcagtttttgttacattaagggttgtcatcgcaatccttagtgttacaaaaacattttgttacactaaggggcaatatgtgacatattgttgcaatttgtaataaaatttagaaaatcgtcttctctataatatccctacatattatggcaaattacaaatgtatctgtttaatactgatacgtattgttaatgcaactgccttgaaatgggggtggcatggggagggtTGAAGATCTGTTT-A------ACTTGCATCGGA--TG---CAAAATAATGCCGGT-AAGCGTTGACAGCGATTTTCTATTT-T-T-A-TCAACAATGGCATTAACCTTAACCTT-AAATCGTGACGTACGGA-------------A-----G-AAGGGGCGGACACTCGGAT--------AGA------------CG---------AACAGTAC-G--ACGGACGGAC----TTAGGTAGCATTATACC--CCCAAC----C------------------C-CA--CC--CAGCCCTTCT-C------AA----GC---TT--GC--A---T---AA----A-----CAAT---------ACGTATCAGTATTAAACAGATAAGTTG-TATA-AACT-GT-GTAATTTGCCATA-ATATG----TAGAAAAGGTGATTAC-CTAAGT------TTTGTTATATATTGCAA----C--AATA----TGT---C-T---CATATCGCACCTTAATGTAACAC-AAT--ATTTTTTTTACATTAAG------GG-T--------T--TAAT----GCTTa
gi|8 : TAACGGTT--AT--T-TAT-AACCACAACCC---TTAGTGTAA-CA-A-----A-----AA--------------T-------AA----G------------TTT----------A----A----------------GA-----A-AATCTTA--TTGTGAT--G------ATAA-----------------ATATAT------T---TTTGTCACACTAAGGGT-TG--ACGA-ATATG--A---ATT-GTATAGTCAT-TCATTAATAA----TTTGT-TAACAA-----CAGA--CCTAATGTTTACA---TACTTGTTGGCCCTTATAC-TTAA--------------------TGAAAGTTAATATGGTATAAATAATACAA-CCAACACGAAATGTAACACACACACCATATAAACATATTCCTA------TATTTAATCTAAGCAATTGTACAGTACAATTTCTTGATTTCATCAGAGATATAAAATACTATTATCTGTC-------TCATACATGTTCCTACCTAGTATATGAACAAAAGAACAGTTC-AACGTGTTACCTGTTCCCTTTTTAGCTtcactggaaatagttattgatactgtt
gi|9 : G---------GACAGTAC-G--ACGGACGGACGGAGATGGGTAGCACTATATC--CCAT-C----CCATTTTAAGACGGTGGTTT-AA--ACAACA------CG-T------AACAACA----TTAAACAAA---T---AA----A-----T--TGTATAAATTGTGTA-----AT------------TTGCTATA-A--T-AT-ATA----GAGATA-TCA------TAGAGAAGTTGAGTTC-TGAAAT------TTTGTTACATATTGCCA----CTTAGTT----TAA---CAA---AATAT-G----TT--TTTAACAA-AAT--ATGTTTGTTAAACTAAG------GG-TTGCA---GTTATAAC----CCCTAGTGT
gi|9 : ATATGTTT---------GTTAAACTAAGGGTTGCAG--T-TAT-------AACCC---CTAGTGTTA-CA-A-----AT----A---------------T--------------------------T------------G----A-------T---TT--TG-------------TA--GGGTAAC--A------A----------------------ATAT------TGAGTTTGTTACACTAAGGGA-TG--tacaaatattgattttgtagggtaacaaatattgagtttgttacactaagggatgttgttacattaaagccacaaagcatttacacacttgatatagtata
gi|9 : ggacagtacgacggacggacggagatgggtagcactatatcccatcccattttaagacggtggtttaaacaacacgtaacaacattaaacaaataaattgtataaattgtgtaatttgctataatatatagagatatcatagagaagttgagttctgaaattttgttacatattgccacttagtttaacaaaatatgtttttaacaaaA----TGT---A-A---CA-A-CATCCCTTAGTGTAACAA-ACTCAATATTTGTTACCCTAttgttacattaaagccacaaagcatttacacacttgatatagtata
blockSeqs : AAAAGAAAT ATTTATAACC GTT T T AACCCATTTTGTTACACTAAGGATCGCAACCGTAACCCTAAGTGTAACGAAAAAACCTAAGGGGT A CCA GAT TGGCAACCAGTACT A T A T ACGT TG C TT ATG C T A AGATATAAGAACTTGTAAC A A A . G C A A . A T . AA A . C GTTCCC T C . T T T C A T G T T T T T C A AT . C AC T G . AT TATT C T A TAA T C ACAACGGGTGGACAGA AAACGTAT CAGACGGATAGGCG G CA GGAG AG ATCCCATTTTAAGACGGTGGTTTAAACAACACGTAACAACATTAAACAAATAAATTGTATAAATT TCAGTATTAAACAGATAAGTTG C AC . A ATTT A AATTTC T A A GAACCC T ATGT TT CATG GAA A AAA C AC C CAATA G GATTGACACCG GTAA
blockSeqs : A GTTTACAACT G . . NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAGACAATCTTATTTCTTTGATAAATATAGT . CAA AA TGAATTGTATA A T A C . T . . . . . . . C GT . A TC . . . . G . . . TGA A A AGAAGGGGCGGACACT . CGGATAGGCAA . . . . ATTCACCACCTTACCCCAACCCCCATGTCAAGCCGGTT ATTTGC . . . . . . TG T G . . T ATGT . . . . AA C AC . ATT G GGTTGCGGTGT .
blockSeqs : . ATGTTACACC . . . AATCAGTTTTTGTTACATTAAGGGTTGTCATCGCAATCCTTAGTGTTACAAAAACAT . A TG CATGTATA . T A T . T . . . A T . . . . G . . . ATA A A AAAATGGA . CG . . . . CAACCCCACCCAGCCCTTCTCAAGCTTGCATAAACAAT ATTTGT . . . . . . . T A . . C . . . . . . G CC . ATT G GATTGCGATGA .
blockSeqs : . ATTTATAACC . . . AATGGGTTTTGTTACACTTAGGACCGCAACGTAACTCTTAGTGTAACAACA . T AG CAAGGGA . T A C . . . . T . . . . . G . . . AA G A AGAACGGG . CG . . . . CCTCACCACCACACCCAATGGCAATTTCAAGGCTGTT ATTTGC . . . . . . . T G . . C . . . . . . C CC . GTT G GGTTGCAGTTA .
blockSeqs : . TTACTTAGA . . . CAATTGTTTCTAAGGGTTGACACCGTAACCTTAGTGTATCAAAAATGTT . A GG TGT . C . T . . . . . C . . . TA A A AGAA . TG . . . . CACCACTGCAACCCATTTCAAAGCGGTTGCACGGTT ATTTGC . . . . . . . C T . . C . . . . . . C CC . ATT T GGTTGA .
blockSeqs : . ATTTATACC . . . AAACTGATTGACACCGCAACCCTTAGTGTAACAGTTGTTACAATTGTT . A GA TGT . . . . . . . C . . . T . . AGA . CG . . . . ATTTGC . . . . . . . T T . . C . . . . . . T CA . ATG G GATGT .
blockSeqs : . ATTTNNNNN . . . AATTAGTTTATGTTACACCGCAACCCTTAGTGTAACACAATTAGTT . G GA . C . . . . . . A . CG . . . . ATTT . . . . . . . T T . . T . . . . . . C TC . TG G GGTT .
blockSeqs : . GCAGTTAT . . . AACTAATTGTGTTACACTAAGGGTTGCGGTGTAACATAAACTAAT . C A . . . A . . . . . . . . A . . C . . . . . . C C . AT .
blockSeqs : . GCGGTGT . . . AATTAGTTTATGTTACACCGCAACCCTAAGTGTAACAAAAATAT . G . A . . . . . . . . T . . . . . . . . . . C . . .
blockSeqs : . GCGGTGT . . . ATGTCTATACATGTGCCAAACATACGCTTAGTGTAACAAGTGT . A A . . . . . . . . . . . . . . . . .
blockSeqs : . ACGGTT . . . ATGTCAATACATGAACAAAACATACGCTTAGTGTAACAACAA . . . .
blockSeqs : . GATTCC . . . AAATAAGTTTAAGAAAATCTTATTGTGATGATAAATATATT . .
blockSeqs : ACGTT . . . CAATATGTCACATATCGCCCTTAAGTGTAACAAAATATT .
blockSeqs : ATG . . . CAGGGGTTGACACCGCAACCCTTAGTGTAAATAT .
blockSeqs : GC . . . ATATTGATTTTGTAGGGTAACAAATATTGAG .
blockSeqs : . . .
blockSeqs : . . .
blockSeqCons : CGTGTAA********** ** ****** AGAAGGG**************************** GGTTGCGGTNA**********
originalCons : GAAAATCGTATTCCAGGGATAAGTATATTTTT---------GTTACACTAAGGGTT--AT--T-TAT-A-CCGCAACCC---TTAGTGTAA-CA-A-----A-----A---------------T-------AA----G------------T------------A----A-------C---AC--CGC-----A-ACCCTTA--GTGTAAC--G------ACAA-----------------ATATAT------T---TTTGTTACACTAAGGGT-TG--ACGA-ATACG--A---ATT-GTATAGACAT-TCGTTAGTAA----TTTAT-TAACAAAATCACAGA--CCAAACGTTTACA---TACTCGTTGGACCTTATACATTAAAGATGTAAGAA--TGTA--TTGAAAGTTAATNTGGCATAAATNATACAAGCCAACACGAAATGTAACACGCACACCNTATAANCATATTCCTAGTCCTATATTTNATCTAAGCAATTGTACAGTACAANTTCTTGATTTCACCAGAGATATAAAATACTATTATCTGTCTCTCATTTCATACATGTTCCTACCTAGTATATGANCGAAAGNACAGTTCAAANGTGTTACCTGTTCCCTTTNTAGCTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGAGAGAGAAAAATATCGAAACGACATGAATGCCCCCCNCCCCACACATCTTNCNATTNTTCGCAAACTCTGTCCGAGGTATNTTGNTTCTGAACACNTGCATGAAGTTTCATCAAAATTGNATTAAAANAAGGNCGGTCGAGCGGTNGCNGTGNTTTTCTGCTTTTAGTAACGATGACGTTGACCTTGACCCGAAAA-TCGTGAAACGCAAACGCATCCGAAGTATCTCTG-TTCTGAACATCTGTGT-A------ACTTGCATCGGA--TG---NAAAATAATGCCGGT-AAGCGTTGACAGCGATTTTCTA-TT-T-T-A-GTAACAGTGACATTGACCTTGACCTGAAAATCGTGACGTACGGA-------------A-----G-A-------------CGGAC--------GGA------------CG---------GACGGTAC-G--ACGGACGGAC----ATGGGTAGCACTATATC--CC---C----C------------------T-CA--AC--CA------CA-T------AA----A----TT--GC--A---T---AA----A-----T--T---------GCGTA-----AT------------TTGCCATA-A--T-AT-GTA----GGGATA-TTA------TAGAGAAGATGATTNC-CTAAAT------TTTGTTACATATTGCAA----C--AATA----TGT---C-A---CATATCGCCCCTTAGTGTAACAA-AAT--ATTTTTGTTACACTAAG------GG-T-------GT--CAAC----CCTTAGTGTA
finalCons : GAAAATCGTATTCCAGGGATAAGTATATTTTT---------GTTACACTAAGGGTT--AT--T-TAT-A-CCGCAACCC---TTAGTGTAA-CA-A-----A-----A---------------T-------AA----G------------T------------A----A-------C---AC--CGC-----A-ACCCTTA--GTGTAAC--G------ACAA-----------------ATATAT------T---TTTGTTACACTAAGGGT-TG--ACGA-ATACGTGTAA----------GACAT-TCGTTAGTAA----TTTAT-TAACAAAATCACAGA--CCAAACGTTTACA---TACTCGTTGGACCTTATACATTAAAGATGTAAGAA--TGTA--TTGAAAGTTAATNTGGCATAAATNATACAAGCCAACACGAAATGTAACACGCACACCNTATAANCATATTCCTAGTCCTATATTTNATCTAAGCAATTGTACAGTACAANTTCTTGATTTCACCAGAGATATAAAATACTATTATCTGTCTCTCATTTCATACATGTTCCTACCTAGTATATGANCGAAAGNACAGTTCAAANGTGTTACCTGTTCCCTTTNTAGCTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGAGAGAGAAAAATATCGAAACGACATGAATGCCCCCCNCCCCACACATCTTNCNATTNTTCGCAAACTCTGTCCGAGGTATNTTGNTTCTGAACACNTGCATGAAGTTTCATCAAAATTGNATTAAAANAAGGNCGGTCGAGCGGTNGCNGTGNTTTTCTGCTTTTAGTAACGATGAC--TGACCTTGACCCGAAAA-TCGTGAAACGCAAACGCATCCGAAGTATCTCTG-TTCTGAACATCTGTGT-A------ACTTGCATCGGA--TG---NAAAATAATGCCGGT-AAGCGTTGACAGCGATTTTCTA-TT-T-T-A-GTAACAGTGACATTGACCTTGACCTGAAAATCGTGACGTACGGAAGAAGGG----------------------------CGGAC--------GGA------------CG---------GACGGTAC-G--ACGGACGGAC----ATGGGTAGCACTATATC--CC---C----C------------------T-CA--AC--CA------CA-T------AA----A----TT--GC--A---T---AA----A-----T--T---------GCGTA-----AT------------TTGCCATA-A--T-AT-GTA----GGGATA-TTA------TAGAGAAGATGATTNC-CTAAAT------TTTGTTACATATTGCAA----C--AATA----TGT---C-A---CATATCGCCCCTTAGTGTAACAA-AAT--ATTTTTGTTACACTAAGGGTTGCGGTNA----------CAAC----CCTTAGTGTA
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|17 ): AAAATGCTATGGTTAAAAAAAGCGGATTTTATAAAAATGATTTTTTGTCGGATTATCATGCGCGATAATAGCTATGTATGATTTGAGG
Unaligned ( gi|19 ): ACTAAAACGATCAATAGTAAAATTCATCAGATTGTTAAACAAGTATTAATGAAACA
Alignments
lowQualScore : 111111111 4444444444444444 8888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888 5555555555555555555555555555 1 1111 11111 11 11 222 4444444444444444444 1 1 1 1 222222 3333333 11 1 222222 222 33 1 222 11 111111 11111 444444444444444444444444444 222222222222222222 66666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666 22222222222222222222222 111111 111111 1111 111
lowQualScore : 555555555 4444444444444444 0 666 2 2 4444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444 2 2222222222222222222222222222 3 3 7777 2 55555 66 3 88 333 6 0 7 7 3333333333333333333 1 1 5 5 5 5 1 1 999999 1 1 2222222 66 1 5 1 888888 1 1 111 1 1 1 00 1 1 1 1 1 1 1 1 1 2 222 8 1 11 8 6 666666 66 9999 5 5 5 77777 2 0 3 111111111111111111111111111 999999999999999999 66 9999 66 55555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555 44444444444444444444444 3 55 3 3 7777 0 4 777777 2 1 3 000000 3 5555 55 7777 555 4 222 77 2 3 99999 4 555 99
lowQualScore : ......... ................ . ... . . ....................................................................................................................................................... . ............................ . . .... . ..... .. . .. ... . . . . ................... . . . . . . . . ...... . . ....... .. . . . ...... . . ... . . . .. . . . . . . . . . . ... . . .. . . ...... .. .... . . . ..... . . . ........................... .................. .. .... .. ........................................................................................................... ....................... . .. . . .... . . ...... . . . ...... . .... .. .... ... . ... .. . . ..... . ... ..
lowQualScore : 444444444 6666666666666666 1 111 2 2 8888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888 7 0000000000000000000000000000 3 4 2222 8 66666 44 7 33 333 7 7 3 3 3333333333333333333 0 0 5 0 0 0 0 0 000000 0 0 5555555 55 0 5 0 555555 0 0 000 0 0 0 55 0 0 0 0 0 0 0 0 0 8 888 0 0 00 0 7 444444 99 8888 0 0 0 44444 1 1 4 444444444444444444444444444 222222222222222222 11 4444 99 55555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555 66666666666666666666666 6 00 6 6 7777 7 0 000000 3 0 6 555555 5 5555 00 1111 888 0 555 44 5 1 33333 2 444 99
consensus : GAAAATCGTATTCCAGGGATAAGTATATTTTT---------GTTACACTAAGGGTT--AT--T-TAT-A-CCGCAACCC---TTAGTGTAA-CA-A-----A-----A---------------T-------AA----G---T------------A----A-------C---AC--CGCA-AC-----CCTTA--GTGTAAC--G------ACAA-----------------ATATAT------T---TTTGTTACACTAAGGGT-TG--ACGA-AT--AC-----G---TGTA-AGACAT-TCGTT---AGCAA----TTTAT-TAACAAAATCACAGA--CCAAACGTTTACA---TACTCGTTGGACCTTATACATTAAAGATGTAAGAA--TGTA--TTGAAAGTTAATNTGGCATAAATNATACAAGCCAACACGAAATGTAACACGCACACCNTATAANCATATTCCTAGTCCTATATTTNATCTAAGCAATTGTACAGTACAANTTCTTGATTTCACCAGAGATATAAAATACTATTATCTGTCTCTCATTTCATACATGTTCCTACCTAGTATATGANCGAAAGNACAGTTCAAANGTGTTACCTGTTCCCTTTNTAGCTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGAGAGAGAAAAATATCGAAACGACATGAATGCCCCCCNCCCCACACATCTTNCNATTNTTCGCAAACTCTGTCCGAGGTATNTTGNTTCTGAACACNTGCATGAAGTTTCATCAAAATTGNATTAAAANAAGGNCGGTCGAGCGGTNGCNGTGNTTTTCTGCTTTTAGTAACGATGAC-TTGACCTTGACCCG-AAAATCGTGAAACGCAAACGCATCCGAAGTATCTCTG-TTCTGAACATCTGTGT-A------ACTTGCATCGGA--TG---NAAAATAATGCCGGT-AAGCGTTGACAGCGATTTTCTA-TT-T-T-A-GTAACAGTGACATTGACCTTGACCTGAAAATCGTGACGTACGGAAGAACGGG---------CGGAC--------GGACG---------G--------ACGGTACG--ACGGACGGAC----ATGGGTAGCACTATATC--CC---C----C------------------T-CA--AC--CA------CA-T------AA----A----TT--GC--A---T---AA----A-----T--T---------GCGTA-----AT------------TTGCCATA-A--T-AT-GTA----GGGATA-TTA------TAGAGAAGATGATTNC-CTAAAT------TTTGTTACATATTGCAA----C--AATA----TGT---C-A---CATATCGCCCCTTAGTGTAACAA-AA-T--ATTTTTGTTACACTAAGGGTTG---CGGTGNCAACCCTTAGTGTA
Reference ( family-3843 ) : GAAAATCGTATTCCAGGGATAAGTATATTTTT---------GTTACACTAAGGGTT--AT--T-TAT-A-CCGCAACCC---TTAGTGTAA-CA-A-----A-----A---------------T-------AA----G---T------------A----A-------C---AC--CGCA-AC-----CCTTA--GTGTAAC--G------ACAA-----------------ATATAT------T---TTTGTTACACTAAGGGT-TG--ACGA-AT--AC-----G---TGTA-AGACAT-TCGTT---AGTAA----TTTAT-TAACAAAATCACAGA--CCAAACGTTTACA---TACTCGTTGGACCTTATACATTAAAGATGTAAGAA--TGTA--TTGAAAGTTAATNTGGCATAAATNATACAAGCCAACACGAAATGTAACACGCACACCNTATAANCATATTCCTAGTCCTATATTTNATCTAAGCAATTGTACAGTACAANTTCTTGATTTCACCAGAGATATAAAATACTATTATCTGTCTCTCATTTCATACATGTTCCTACCTAGTATATGANCGAAAGNACAGTTCAAANGTGTTACCTGTTCCCTTTNTAGCTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGAGAGAGAAAAATATCGAAACGACATGAATGCCCCCCNCCCCACACATCTTNCNATTNTTCGCAAACTCTGTCCGAGGTATNTTGNTTCTGAACACNTGCATGAAGTTTCATCAAAATTGNATTAAAANAAGGNCGGTCGAGCGGTNGCNGTGNTTTTCTGCTTTTAGTAACGATGAC--TGACCTTGACCCG-AAAATCGTGAAACGCAAACGCATCCGAAGTATCTCTG-TTCTGAACATCTGTGT-A------ACTTGCATCGGA--TG---NAAAATAATGCCGGT-AAGCGTTGACAGCGATTTTCTA-TT-T-T-A-GTAACAGTGACATTGACCTTGACCTGAAAATCGTGACGTACGGAAGAA-GGG---------CGGAC--------GGACG---------G--------ACGGTACG--ACGGACGGAC----ATGGGTAGCACTATATC--CC---C----C------------------T-CA--AC--CA------CA-T------AA----A----TT--GC--A---T---AA----A-----T--T---------GCGTA-----AT------------TTGCCATA-A--T-AT-GTA----GGGATA-TTA------TAGAGAAGATGATTNC-CTAAAT------TTTGTTACATATTGCAA----C--AATA----TGT---C-A---CATATCGCCCCTTAGTGTAACAA-AA-T--ATTTTTGTTACACTAAGGGTTG---CGGTNACAACCCTTAGTGTA
gi|1 : GAGAATCTTATTCCAGGGATAGGTATATCTTT---------GTTACACTAAGGGTT--AT--T-TAT-AACTGCAACCC---TTAGTGTAA-CA-A-----A-----A---------------T-------AA----G---T------------A----A-------C---AC--AATA-AG-----TTTTG--ATAAGAC--G------ATAA-----------------GTATAT------T---TTTGTTACACTAAGGGT-AG--ACGA-AT--AT-----GAATTGTATAGTCAT-TCATT---AGTAA----TTTAT-TTACAAAATTACAGA--CCAAACGTTTACA---TACTTGTTGGACCTTATGTATTAAAAATGTAAAAA--TGTA--TTAAAAATTAATTTGACATAAATTAT-CAAGCCAACACAAAAT-TAA-ATGTACACTTTATAATCATATTCCTAGTCCTATATTTTATCTAAGCAATTGTACAGTACAAGTTCTTGATTTCACCAGAGATATAAAATACTATTATCTGTCTCTCATTTCATACATGTTCCTACCTAGTATATG-TCGAAAATACAGTTCAAAAGTGTTACTT------TTTGTAGCT
gi|1 : AAAGAGAGAAAAATATCAAAACGACATGAATGTCCCCCACCCCACACATCTTACAATTGTTCGCAAACT-TGTCCGAGGTATCTTGGTTCTGAACACCTACATGAAGTTTCATCAAAATTGGATTAAAAGAAGGGCAGTCAAGCGGTAGCGGTGATTTTCTGCTTTTAGTAATGATGACATTGACCTTGACCCGAAAAATCGTGAAATGCAAACGCATCCGAATTATCTCTG-TTCTGAACATCTGTGT-ATTTGTTACTTGCATCTGA--TG---GGAAATAATGCCGGT-AATTGTTGACAGCAATTTTCTA-TT-T-T-ATGTAACAGTGACATTGACCTTGACCTGAAAATCGTGATTTACGAAAAA--------------CAGAA--------GGACA---------G--------ACGGCACG--ACAGACGGAC----ATGGGTAGCACTATATC--TC---C----C------------------T-CA--AC--CA------TA-T------AA----A----TT--GT--A---T---AA----A-----T--T---------GTGAA-----AT------------TTGCCATA-A--TAAT-GCA----GGGATA-TTA------TAGAGAAGATGATTAA-CTAAAT------TTTGTTGCATATTGCAA----C--AATA----TGT---C-A---CAAATAGCCCTTTAGTGAAACAA-AA-C--ATTTTTGTTACACTAAGGGT-------GT--CAACCCTTAGTGTAacaatttagtaatacctcatgattcatgactaatccctttccaaaataaccaaaacattcactgaaataatgttttgtttgtaagacttcttacttttctttttataattatcatttttccaatcttccacagcatatttacagtcacatttgttagttaaaatatacacgaaaaaaagagagaaaaatatcaaaacgacatgaatgtcccccaccccacacatcttacaattgttcgcaaacttgtccgaggtatcttggttctgaacacctacatgaagtttcatcaaaattggattaaaagaagggcagtcaagcggtagcggtgattttctgcttttagtaatgatgacattgaccttgacccgaaaaatcgtgaaatgcaaacgcatccgaattatctctgttctgaacatctgtgtatttgttacttgcatctgatgggaaataatgccggtaattgttgacagcaattttctattttatgtaacagtgacattgaccttgacctgaaaatcgtgatttacgaaaaacagaaggacagacggcacgacagacggacatgggtagcactatatctccctcaaccatataaattgtataaattgtgaaatttgccataataatgcagggatattatagagaagatgattaactaaattttgttgcatattgcaacaatatgtcacaaatagccctttagtgaaacaaaacatttttgttacactaagggtgtcaacccttagtgtaccca
gi|10 : gagaatcttattccagggataggtatatctttgttacactaagggttatttataactgcaacccttagtgtaacaaaataagtaacacaataagttttgataagacgataagtatatttttgttacactaagggtagacgaatatgaattgtatagtcattcattagtaatttatttacaaaattacagaccaaacgtttacatacttgttggaccttatgtattaaaaatgtaaaaatgtattaaaaattaatttgacataaattatcaagccaacacaaaattaaatgtacactttataatcatattcctagtcctatattttatctaagcaattgtacagtacaagttcttgatttcaccagagatataaaatactattatctgtctctcatttcatacatgttcctacctagtatatgtcgaaaatacagttcaaaagtgttactttttgtagctacaatttagtaatacctcatgattcatgactaatccctttccaaaataaccaaaacattcactgaaataatgttttgtttgtaagacttcttacttttctttttataattatcatttttccaatcttccacagcatatttacagtcacatttgttagttaaaatatacacgaaaaACGC---TTAGTGTAA-CA-AC----A-----A---------------TTGTTTCTAA----GGGTT------------G----A-------C---AC--CGTA-AC-----C-TTA--GTGTATC-----------AA-----------------AAATGT------T---TTTGTTATACTAAGGGT-TGCCACAA-Accca
gi|10 : tattgtatttatattcgtcataccattgtttatagaatgttatggttataaaaaagcggattttatgccggattatcatgatcaataatagctatgtatgcCCCTTAGTATAACAA-AAAC--ATTTTTGATACACTAA-GGTTA---CGGTGTCAACCCTTAGatgttttgttcatgtattgacatttgattataaaaagggttcatttagtgtaacatttcttttagaaatttaattatccctgctatatgtacgaaattggagcatatagtttt
gi|10 : tattgtatttatattcgtcataccattgtttatagaatgttatggttataaaaaagcggattttatgccggattatcatgatcaataatagctatgtatgctttgtggcaaA-----AT------------TT--CGTACA--T-ATAGCA----GGGATAATTAAATTTCTAAAAGAAATG-TTACACTAAATGAACCCTTT-TTATA-AT--CAAATGTC--AATA----CATGAAC-AAAACATA-CGC---TTAGTGTAACAACAA-T---TGTTT------CTAAGGGTTGACACCGTAA----CCTTAGTGTAaaacaattgttgttacactaagcgtatgttttgttcatgtattgacatttgattataaaaagggttcatttagtgtaacatttcttttagaaatttaattatccctgctatatgtacgaaattggagcatatagtttt
gi|10 : tattgtatttatattcgtcataccattgtttatagaatgttatggttataaaaaagcggattttatgccggattatcatgatcaataatagctatgtatgctttgtggcaacccttagtataacaaaaacatttttgaCAGGGATAATTAAATTTCTAAAAGAAATGTTACACTAA--------------AT-G-----AACCC---TTTTTATAATCA-AATGTCA-----A---------------T-------AC----A---TG-----------A----A-------C---AA--AACATAC-----GCTTA--GTGTAAC--A------ACAA----------------------------------TTGTT--TCTAAGGGT-TG--ACggagcatatagtttt
gi|11 : tattgtatttatattcgtcataccattgtttatagaatgttatggttataaaaaagcggattttatgccggattatcatgatcaataatagctatgtatgctttgtggcaacccttagtataacaaaaacatttttgatacactaaggttacggtGAAAATCGTGTTTCGGCGACAAGTATATGTTT---------GTTTTACTAAGGGTT--AT--T-TATAA-CCGCAAACA---TTAGTGTAA-GG-A-----A-----A---------------T-------AA----G---T------------ctatatgtacgaaattggagcatatagtttt
gi|12 : tnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaaattacacaaattaaagcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaGAAAATCGTATTCCAAAGATAAGTATATTTTC---------GTTACACTAAGGGTT--GT--T-TACAA-CTGCAACCC---TT
gi|13 : nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaTT---------GTTACACTAAGAGTT--AC--G-T------TGCGGTCC---TAAGTGTAA-CA-A-----A-----ACCCATTTTGTTACACT-------AA----G---G------------A----T-------CGCAAC--CGTA-AC-----CCTAA--GTGTAAC--G------AAAA-----------------A-ACCTAAGGGGT---TTTGTTTCACTAAGAGT-T
gi|13 : ggtTTTTC---------GTTACACTTAGGGTT--ACGGT-T-------GCGATCC---TTAGTGTAA-CA-A-----A-----A---------------T-------GG----G---TTTTGTTACACTTA----G-------G---AC--CGCA-ACGTAACTCTTA--GTGTAAC--A------ACA----------------------------------CTTGTTACACTAAGCGTATG--TTTG-GC--AC-----A---TGTATAGACAT-TTGAT---AATAA----cacttgttacactaagcgtatgtttggcacatgtatagacatttgataataaaacgggttctctaagtaaaaccttttttaactagaaatttatttatccctgctatgaaatg
gi|13 : ggtaactcttagtgaaacaaaaccccttaggttCAGGGATAAATAAATTTCTA--------GTTAAA--AAAGGTTTTAC--T-TAG-A---G-AACCCGTTTTATTAT---CA-A-----ATGTCTA---------------T-------AC----A---TGTGCCA------A----A-------C---AT-------AC-----GCTTA--GTGTAAC-----------AA-----------------GTGT--------------TGTTACACTAAGAGT-T---ACGaacgggttctctaagtaaaaccttttttaactagaaatttatttatccctgctatgaaatg
gi|14 : ggtaactcttagtgaaacaaaaccccttaggttttttcgttacacttagggttacggttgcgatccttagtgtaacaaaatgggttttgttacacttaggaccgcaaAT--TGACCTTGACTTG-AAAATCGTGAAACGCCTCCGCATCTGTAGTATC-------------ATCTGTGT-A------ACTTGCATCGGA--CG---GAAAATAATGCCGGT-AAGCATTGACAGCGATTTTCTA-TT-T-TAA-GTATCAGTGATATTGACCTTGACCTGCAAATCGTAACGTACGGAAAAATGGA---------CAGACAAACGTATGGGCG---------A--------ACGGTACG--ACAGACGGAC----AGGTGTAGCACTATATT--TC---C----C------------------ctatgaaatg
gi|15 : cTTTGTTACACTGAAGGTTG---CGGTGTCAATCCTTAATGTAcat
gi|15 : C---TTAGTGTAA-CA-ATTAC-A-----T---------------T-------AA----GGATT------------G----A-------C---AC--CGCA-AC-----CTTCA--GTGTAAC--A------Aattgttacactaagcatatgtttgatacatgtattgacatttgattatacaacagattcagttagggttataatgtttgttcaactagaaatttatcctgctatggaatggggacatatggtgt
gi|15 : t-CTGAAT------CT-GTTGTATAAT-CAAATGTC--AATACATGTAT---C-AAA-CATAT-GC---TTAGTGTAACAA--------------TTACATTAAGGATTG---ACACCGCAACCTTCAGTGTAcatatgtttgatacatgtattgacatttgattatacaacagattcagttagggttataatgtttgttcaactagaaatttatcctgctatggaatggggacatatggtgt
gi|16 : tttgtTG---CGATGTCAACCCTTAGTGTAttagggttataatgtttgttcaactagaaatttatcctgctatggaatggggacatatggtgt
gi|16 : aTGTAACAA-A----------TGTTACACTAAGGGTTG---acatttgttacatgtattggcatttgattataaaacaggttcatttagtgtaacaattttttttttttaaacttagaaatttatttatccct
gi|18 : atgcgatgtGAAATTCTTATTCCAGGGAAAGGAATATTTT----------GTTACACCAAGGGTT--AT--T-TAT-A-CCGCAAtgtattggcatttgattataaaacaggttcatttagtgtaacaattttttttttttaaacttagaaatttatttatccct
gi|2 : aGAACATCGTACTTCTTTGATAAATATATTTTT---------GTTACACTAAGGATT--AT--T-TNN-N-NNNNNNNNN---NNNNNNNNN-NN-N-----N-----N---------------N-------NN----N---N------------N----N-------N---NN--NNNN-NN-----NNNNN--NNNNNNNAAG------ACAATCTTATTTCTTTGATAAATATAG------T---TTTGTTACACTAAGGGT-T
gi|20 : tagagtaatgctatattagtaatagcatcatcttgagttataattgtcagaaaaggaatacttatgttgcatggggaaggggggtcgagattcagggagaaaagggtcaataacaagttcatcaaaattagaataatgcataaatactttcatttgtcactcattaatagttgtatcctgtttctcagatgttcaactcttgaaagtgacatagcgcgctctagttttattttggttttaaaactgcttcattttgtcaccatcgttataaaagcattcatctaaaagtaggctgacatcgcaatatatcataaaatgtgttttatcttggacatttgtagttatggaacattactaatacaattatcttagtgaaaataaataacattaacgaagagtaagtagactcatatcatctcaaactcttgtttaaaaaacgtaaataaacaaacttatataaaattacgaatctcctttaaatcttcggttttccacttcattattttaagttatttaccagtgttaagaaaaccgtccaacaaagtttttctaagggttgtttnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaaCGGCAGAC-AGA---------CGGAC--------GGACG---------A--------ACG----G--ACGGACGGAC----AGTGATAACATTGTa
gi|3 : GTAA--ATGACGTTGACCTTGACCCG-AAAATCGTGAAACACAAACGCATCTGAAGTCTCACTG-TTCTGAACATCTGTGT-A------TCTTACATTGGA--GG---GGAAATAATACTGGT-AAGCGTTGACAGCGATT---TA-TC-T-T--------AGTGACATTGACCTTAACCTGAAAATCGTGATGTACGGAAGAACGGA---------CGGAC--------AGACG---------GATAGGCGAACGGTACG--ACGGACGGAC----ATGGGTAGCACTATA-C--TC---C----C------------------T-CACCAC--CA------CACC------CA----A----TG--GC--AATTT---CA----AGGCTGT--T---------GCATA-----A------------------ACA-A--T-AT-GTA----TCAGTA-TTA------AACATATAA--ATTGT-ATAAAT------TGTG-TA-AT-TTGCCA----T--AATA----TGT---tcat
gi|3 : atttattgccgcaacc------------------T-TA--AA--CA------TA-T------AA----A----TT--GT--A---T---AA----A-----T--T---------GTGTA-----AT------------TTGCCATA-A--T-AT-GTA----GGGATG-TTA------TAGAGAAGATGATTAC-CTAAAT------TTTGTTACATATTGCAA----C--AATA----TGT---C-A---CATATGGACCCTTAGTGTAACAA-AA-T--AT-----TTACACTAAGGGTTG---CGGTGTCAACCCCTGGTGTAagggatgttatagagaagatgattacctaaattttgttacatattgcaacaatatgtcacatatggacccttagtgtaacaaaatatttacactaagggttgcggtgtcaacccctggtgtaacagaaactgattgacaccgcaacccttagtgtaacagttgttacaattgttactgtttcactaagggttgcaacagacgtggcaaccagtacttacaagaatttaaacaatcatatattctaaacgtagacaatgtatcgtgaatgctatacagtatagatataagaacttgtaacttgtaagtcgaaataaacttctgtattt
gi|3 : atttattgccgcaaccgtaaatgacgttgaccttgacccgaaaatcgtgaaacacaaacgcatctgaagtctcactgttctgaacatctgtgtatcttacattggaggggaaataatactggtaagcgttgacagcgatttatcttagtgacattgaccttaacctgaaaatcgtgatgtacggaagaacggacggacagacggataggcgaacggtacgacggacggacatgggtagcactatactccctcaccaccacacccaatggcaatttcaaggctgttgcataaacaatatgtatcagtaT---------GTTACACTAAGGGTT--GC--GGTGT------CAATCAG--TTTCTGTTA-CA-C-----C-----A---------------G-------GG----G---TT-----------G----A-------C---AC--CGCA-AC-----CCTTA--GTGT--------------AA-----------------ATA---------T---TTTGTTACACTAAGGGT-C----C---AT--AT-----G---T-----GACATATTGTT----GCAA------TATGTAACAAAATacagaaactgattgacaccgcaacccttagtgtaacagttgttacaattgttactgtttcactaagggttgcaacagacgtggcaaccagtacttacaagaatttaaacaatcatatattctaaacgtagacaatgtatcgtgaatgctatacagtatagatataagaacttgtaacttgtaagtcgaaataaacttctgtattt
gi|3 : atttattgccgcaaccgtaaatgacgttgaccttgacccgaaaatcgtgaaacacaaacgcatctgaagtctcactgttctgaacatctgtgtatcttacattggaggggaaataatactggtaagcgttgacagcgatttatcttagtgacattgaccttaacctgaaaatcgtgatgtacggaagaacggacggacagacggataggcgaacggtacgacggacggacatgggtagcactatactccctcaccaccacacccaatggcaatttcaaggctgttgcataaacaatatgtatcagtattaaacatataaattgtataaattgtgtaatttgccataatatgtagggatgttatagagaagatgattacctaaTTACACTAAGGGTT--GC--GGTGT------CAACCC---CTGGTGTAA-CA-G-----A-----AAC-------------T-------GA----T---T------------G----A-------C---AC--CGCA-AC-----CCTTA--GTGTAAC--AGTTGTTAC-A-----------------AT-TGT------T---ACTGTTTCACTAAGGGT-TG---CAACAG--AC-----G---TGGC-AACCAG-TACTTACAAG-AA----TTTA---AAC--AATCATATATTCTAAACGTAGACAATGTA-TCG-TGAATGCTATACAGTATAGATATAAGAACTTGTAACTTGTAAGTgttgttacaattgttactgtttcactaagggttgcaacagacgtggcaaccagtacttacaagaatttaaacaatcatatattctaaacgtagacaatgtatcgtgaatgctatacagtatagatataagaacttgtaacttgtaagtcgaaataaacttctgtattt
gi|4 : atttattgccgcaaccgtaaatgacgttgaccttgacccgaaaatcgtgaaacacaaacgcatctgaagtctcactgttctgaacatctgtgtatcttacattggaggggaaataatactggtaagcgttgacagcgatttatcttagtgacattgaccttaacctgaaaatcgtgatgtacggaagaacggacggacagacggataggcgaacggtacgacggacggacatgggtagcactatactccctcaccaccacacccaatggcaatttcaaggctgttgcataaacaatatgtatcagtattaaacatataaattgtataaattgtgtaatttgccataatatgtagggatgttatagagaagatgattacctaaattttgttacatattgcaacaatatgtcacatatggacccttagtgtaacaaaatatAGAAAGAGAAAAATATCGAAACGACATGAATACCCCCTCCCTC---TATCTTTCTATTTTTTGCAAAcgaaataaacttctgtattt
gi|4 : TTTCTATTTTTTGCAAAGGTGAT------CTTGACTCA-AGAATCCATAAGCGCAAACTCGTCCGAAGTATAT-TGTTTCTGAACACGTGTATGA------AGTTTCATCAAAATTGTATTAAAATAAGGTCGGTCGAGCGGTTACTGTGCTTTTCTG-CTAT-A-A-GTAACGATGAC--TGACTTTGACCAGAAAGTCGTGAggtgatcttgactcaagaatccataagcgcaaactcgtccgaagtatattgtttctgaacacgtgtatgaagtttcatcaaaattgtattaaaataaggtcggtcgagcggttactgtgcttttctgctataagtaacgatgactgactttgaccagaaagtcgtgaaacgctaacgtattcaaagtatctctgttctgaacatctgtaacttgcatgggatggaaaataatgccggtaaacgttgaaatcgattttctattttgagtaactgtgacgttgaccttgacctgaaaatcgttacgtacggaaggacggatggacgatacgcaaaagacggacatgggtagcactatatcccattcaccaccttaccccaacccccatgtcaagccggttgcataaataatacgtatcggtattaaacagatgaattgtataaattgtgtaatttgtcataatatgtagagataatatagagaagatgatttccttgattttgttacatatttcaacaatatgtcacatatcgcccttaagtgtaacaaaatatttttgttacactaacagttgcggtgacaagggagactttgttagtaaacgttttattaaatg
gi|4 : agaaagagaaaaatatcgaaacgacatgaataccccctccctctatcCGCAAACTC-GTCCGAAGTATATTGTTTCTGAACACGTGTATGAAGTTTCATCAAAATTGTATTAAAATAAGGTCGGTCGAGCGGTTACTGTGCTTTTCTGCTATAAGTAACGATGAC--TGACTTTGACCAG-AAAGTCGTGAAACGCTAACGTATTCAAAGTATCTCTG-TTCTGAACATC--TGT-A------ACTTGCATGGGA--TG---GAAAATAATGCCGGT-AAACGTTGAAATCGATTTTCTA-TT-T-TGA-GTAACTGTGACGTTGACCTTGACCTGAAAATCGTTACGTACGGAA-----------------GGAC--------GGATG---------G--------ACGATACGCAAAAGACGGAC----ATGGGTAGCACTATATC--CC---A----T------------------T-C---AC--CA------CC-TTACCCCAA----C----CC--CC--A---TGTCAAGCCGG-----T--T---------GCATA-----A------------------ATA-A--T-AC-GTA----TCGGTA-TTA------AACAGATGA--ATTGT-ATAAAT------TGTG-TA-AT-TTGTCA----T--AATA----TGT---aacgctaacgtattcaaagtatctctgttctgaacatctgtaacttgcatgggatggaaaataatgccggtaaacgttgaaatcgattttctattttgagtaactgtgacgttgaccttgacctgaaaatcgttacgtacggaaggacggatggacgatacgcaaaagacggacatgggtagcactatatcccattcaccaccttaccccaacccccatgtcaagccggttgcataaataatacgtatcggtattaaacagatgaattgtataaattgtgtaatttgtcataatatgtagagataatatagagaagatgatttccttgattttgttacatatttcaacaatatgtcacatatcgcccttaagtgtaacaaaatatttttgttacactaacagttgcggtgacaagggagactttgttagtaaacgttttattaaatg
gi|4 : agaaagagaaaaatatcgaaacgacatgaataccccctccctctatctttctattttttgcaaaggtgatcttgactcaagaatccataag------------------T-TA--AA--CA------GA-T------GA----A----TT--GT--A---T---AA----A-----T--T---------GTGTA-----AT------------TTGTCATA-A--T-AT-GTA----GAGATA-ATA------TAGAGAAGATGATTTC-CTTGAT------TTTGTTACATATTTCAA----C--AATA----TGT---C-A---CATATCGCCCTTAAGTGTAACAA-AA-T--ATTTTTGTTACACTAACAGTTG---CGGTGACAAagagataatatagagaagatgatttccttgattttgttacatatttcaacaatatgtcacatatcgcccttaagtgtaacaaaatatttttgttacactaacagttgcggtgacaagggagactttgttagtaaacgttttattaaatg
gi|4 : agaaagagaaaaatatcgaaacgacatgaataccccctccctctatctttctattttttgcaaaggtgatcttgactcaagaatccataagcgcaaactcgtccgaagtatattgtttctgaacacgtgtatgaagtttcatcaaaattgtattaaaataaggtcggtcgagcggttactgtgcttttctgctataagtaacgatgactgactttgaccagaaagtcgtgaaacgctaacgtattcaaagtatctctgttctgaacatctgtaacttgcatgggatggaaaataatgccggtaaacgttgaaatcgattttctattttgagtaactgtgacgttgaccttgacctgaaaatcgttacgtacggaaggacggatggacgatacgcaaaagacggacatgggtagcactatatcccattcaccaccttaccccaacccccatgtcaagccggttgcataaataatacgtatcggta-CA-AC----A-----A---------------T-------AT----G---T------------C----A-------C---ATATCGC---------CCTTAA-GTGTAAC-----------AA-----------------A-ATAT------T---TTTGTTACACTAACAGT-TG---CGG-TG--AC-----A---AGGG-AGAC-T-TTGTT---AGTAAACGTTTTAT-TAAgggagactttgttagtaaacgttttattaaatg
gi|5 : agaaagagaaaaatatcgaaacgacatgaataccccctccctctatctttctattttttgcaaaggtgatcttgactcaagaatccataagcgcaaactcgtccgaagtatattgtttctgaacacgtgtatgaagtttcatcaaaattgtattaaaataaggtcggtcgagcggttactgtgcttttctgctataagtaacgatgactgactttgaccagaaagtcgtgaaacgctaacgtattcaaagtatctctgttctgaacatctgtaacttgcatgggatggaaaataatgccggtaaacgttgaaatcgattttctattttgagtaactgtgacgttgaccttgacctgaaaatcgttacgtacggaaggacggatggacgatacgcaaaagacggacatgggtagcactatatcccattcaccaccttaccccaacccccatgtcaagccggttgcataaataatacgtatcggtattaaacagatgaattgtataaattgtgtaatttgtcataatatgtagagataatatagagaagatgatttccttgattttgttacatattt------ATTTGCATCGGA--TG---CAAAGTAATACCCGT-AAGCGTTGACACCGATTTTCTA-----------------TGACATTGACCTTGTCCT-AAAATCGTGACGTACAGAAGAACGGG---------CGGAC--------AGACGGATAGGCAAG--------ACGGTATG--ACGGACGGAC----ATGGGTAGCAATATATC--CT---CACCAC------------------TGCA--AC--C-------CA-TTTC---AA----AGCGGTT--GC--A---C----G----G-----T--T---------GCGTA-----A------------------ACA-A--T-AT-ATA----atg
gi|5 : --A---T---AA----A-----T--T---------GTGTA-----AT------------TTGCCATA-C--T-AT-GTA----GGGATA-TTA------TAGAAAAGATAATTTC-CTAAAT------TGTGTTACATATTGCAA----C--AATA----TGT---C-G---CATATCGCCCCTTGGTGTAACAA-AA-T--ATTTTTGTTACACTTAGGGTTG---CGGTtcagaattaaacagataaattgtgtaatttgccatactatgtagggatattatagaaaagataatttcctaaattgtgttacatattgcaacaatatgtcgcatatcgccccttggtgtaacaaaatatttttgttacacttagggttgcggtgtaacataaactaattgtgttacactaagggttgcggtgtaacataaactaattttgttacactaagggttgcggaatcaacccttagtgtaacaattgtt
gi|5 : atttgcatcggatgcaaagtaatacccgtaagcgttgacaccgattttctatgacattgaccttgtcctaaaatcgtgacgtacagaagaacgggcggacagacggataggcaagacggtatgacggacggacatgggtagcaatatatcctcaccactgcaacccatttcaaagcggttgcacggttgcgtaaacaatatatatcagaattaaacagTT--ATG-T-TAC-A-CCGCAACCC---TTAGTGTAA-CA-C-----A-----A---------------T-------TA----GTT-T------------ATGTTA-------C---AC--CGCA-AC-----CCTAA--GTGTAAC--A------A-AA-----------------ATA---------T---TTTGTTACACCAAGG----G--GCG--AT--AT-----G---C-----GACATATTGTT----GCAA------TATGTAACACAATgtaacataaactaattgtgttacactaagggttgcggtgtaacataaactaattttgttacactaagggttgcggaatcaacccttagtgtaacaattgtt
gi|5 : atttgcatcggatgcaaagtaatacccgtaagcgttgacaccgattttctatgacattgaccttgtcctaaaatcgtgacgtacagaagaacgggcggacagacggataggcaagacggtatgacggacggacatgggtagcaatatatcctcaccactgcaacccatttcaaagcggttgcacggttgcgtaaacaatatatatcagaattaaacagataaattgtgtaatttgccatactatgtagggatattatagaaaagataatttcctaaATATTTTT---------GTTACACTTAGGGTT--G------------CG------------GTGTAA-CATA-----A-----AC--------------T-------AATTGTG---T------------T----A-------C---AC--T--A-AG-----GGTTGCGGTGTAAC---------ATAA-----------------AC-TAA------T---TTTGTTACACTAAGGGT-TG--CGGA-ATCAACCCTTAG---TGTA---ACAA-TTGTT---actaattttgttacactaagggttgcggaatcaacccttagtgtaacaattgtt
gi|5 : atttgcatcggatgcaaagtaatacccgtaagcgttgacaccgattttctatgacattgaccttgtcctaaaatcgtgacgtacagaagaacgggcggacagacggataggcaagacggtatgacggacggacatgggtagcaatatatcctcaccactgcaacccatttcaaagcggttgcacggttgcgtaaacaatatatatcagaattaaacagataaattgtgtaatttgccatactatgtagggatattatagaaaagataatttcctaaattgtgttacatattgcaacaatatgtcgcatatcgccccttggtgtaacaaaTT---------GTTACACTAAGGGTTG-AT--T-------CCGCAACCC---TTAGTGTAA-CA-A-----A-----A---------------T-------TA----GTT-T------------ATGTTA-------C---AC--CGCA-AC-----CCTTA--GTGTAAC---------ACAA-----------------TTA-GT------T---TATGTTACAC
gi|6 : atttgcatcggatgcaaagtaatacccgtaagcgttgacaccgattttctatgacattgaccttgtcctaaaatcgtgacgtacagaagaacgggcggacagacggataggcaagacggtatgacggacggacatgggtagcaatatatcctcaccactgcaacccatttcaaagcggttgcacggttgcgtaaacaatatatatcagaattaaacagataaattgtgtaatttgccatactatgtagggatattatagaaaagataatttcctaaattgtgttacatattgcaacaatatgtcgcatatcgccccttggtgtaacaaaatatttttgttacacttagggttgcgCTCTTAGTGTAACAC-AA-TCAGTTTTTGTTACATTAAGGGTTG---TCATCGCAATCCTTAGTGTttgtt
gi|6 : CTC---TTAGTGTAA-CA-C-----A-----A---------------T-------CA----G---TTTTTGTTACATTA----AGGGTTGTC---AT--CGCA-AT-----CCTTA--GTGTTAC--A------A-AA-----------------ACAT------------TTTGTTACACTAAGG----G--GC-A-AT--AT-----G---T-----GACATATTGTT----GCAA----TTTG--TAATAAAATtacaaaaacattttgttacactaaggggcaatatgtgacatattgttgcaatttgtaataaaatttagaaaatcgtcttctctataatatccctacatattatggcaaattacaaatgtatctgtttaatactgatacgtattgttaatgcaactgccttgaaatgggggtggcatggggagggttggtgaggggctaatatagtgctacccatgtccatctgttgtaccatccgtccatccgtctgtccacccgttgttctgtacataacaatttcagttacggtcagtatcactgctactataaatagaaaatccctgtcaacgtttacaagtattattttgcatcggata
gi|6 : --A---T---AC----A-----T--T----------TGTA-----AT------------TTGCCATA-A--T-AT-GTA----GGGATA-TTA------TAGAGAAGACGATTTT-CTAAAT------TTTATTACAAATTGCAA----C--AATA----TGT---C-A---CATATTGCCCCTTAGTGTAACAA-AA-T--GTTTTTGTAACACTAAGGATTG---CGATGACAACCCTTAATGTAttagaaaatcgtcttctctataatatccctacatattatggcaaattacaaatgtatctgtttaatactgatacgtattgttaatgcaactgccttgaaatgggggtggcatggggagggttggtgaggggctaatatagtgctacccatgtccatctgttgtaccatccgtccatccgtctgtccacccgttgttctgtacataacaatttcagttacggtcagtatcactgctactataaatagaaaatccctgtcaacgtttacaagtattattttgcatcggata
gi|6 : ctcttagtgtaacacaatcagtttttgtATCCGA--TG---CAAAATAATACTTGT-AAACGTTGACAGGGATTTTCTA-TT-TAT-A-GTAGCAGTGATACTGACCGTAAC-TGAAA-TTGTTATGTACAGAACAACGGG---------TGGACAGACGGATGGACG---------G--------ATGGTACA--ACAGATGGAC----ATGGGTAGCACTATATTAGCC---C----C------------------T-C---AC--CA------ctgtttaatactgatacgtattgttaatgcaactgccttgaaatgggggtggcatggggagggttggtgaggggctaatatagtgctacccatgtccatctgttgtaccatccgtccatccgtctgtccacccgttgttctgtacataacaatttcagttacggtcagtatcactgctactataaatagaaaatccctgtcaacgtttacaagtattattttgcatcggata
gi|7 : ctcttagtgtaacacaatcagtttttgttacattaagggttgtcatcgcaatccttagtgttacaaaaacattttgttacactaaggggcaatatgtgacatattgttgcaatttgtaataaaatttagaaaatcgtcttctctataatatccctacatattatggcaaattacaaatgtatctgtttaatactgatacgtattgttaatgcaactgccttgaaatgggggtggcatggggagggtTGAAGATCTGTTT-A------ACTTGCATCGGA--TG---CAAAATAATGCCGGT-AAGCGTTGACAGCGATTTTCTATTT-T-T-A-TCAACAATGGCATTAACCTTAACCTT-AAATCGTGACGTACGGAAGAA-GGGGCGGACACTCGGAT--------AGACG---------A--------ACAGTACG--ACGGACGGAC----TTAGGTAGCATTATACC--CCCAAC----C------------------C-CA--CC--CAGCCCTTCT-C------AA----GC---TT--GC--A---T---AA----A-----CAAT---------ACGTATCAGTATTAAACAGATAAGTTG-TATA-AACT-GT-GTAATTTGCCATA-ATATG----TAGAAAAGGTGATTAC-CTAAGT------TTTGTTATATATTGCAA----C--AATA----TGT---C-T---CATATCGCACCTTAATGTAACAC-AA-T--ATTTTTTTTACATTAAGGGTTa
gi|8 : TAACGGTT--AT--T-TAT-AACCACAACCC---TTAGTGTAA-CA-A-----A-----AA--------------T-------AA----G---TTT----------A----A----------------GAA-AA-----TCTTA--TTGTGAT--G------ATAA-----------------ATATAT------T---TTTGTCACACTAAGGGT-TG--ACGA-AT--AT-----GAATTGTATAGTCAT-TCATT---AATAA----TTTGT-TAACAA-----CAGA--CCTAATGTTTACA---TACTTGTTGGCCCTTATAC-TTAA--------------------TGAAAGTTAATATGGTATAAATAATACAA-CCAACACGAAATGTAACACACACACCATATAAACATATTCCTA------TATTTAATCTAAGCAATTGTACAGTACAATTTCTTGATTTCATCAGAGATATAAAATACTATTATCTGTC-------TCATACATGTTCCTACCTAGTATATGAACAAAAGAACAGTTC-AACGTGTTACCTGTTCCCTTTTTAGCTtaatgctttcactggaaatagttattgatactgtt
gi|9 : G---------G--------ACAGTACG--ACGGACGGACGGAGATGGGTAGCACTATATC--CCAT-C----CCATTTTAAGACGGTGGTTT-AA--ACAACA------CG-T------AACAACA----TTAAACAAA---T---AA----A-----T--TGTATAAATTGTGTA-----AT------------TTGCTATA-A--T-AT-ATA----GAGATA-TCA------TAGAGAAGTTGAGTTC-TGAAAT------TTTGTTACATATTGCCA----CTTAGTT----TAA---CAA---AATAT-G----TT--TTTAACAA-AA-T--ATGTTTGTTAAACTAAGGGTTG---CAGTTATAACCCCTAGTGT
gi|9 : ATATGTTT---------GTTAAACTAAGGGTTGCAG--T-TAT-------AACCC---CTAGTGTTA-CA-A-----AT----A---------------T-----------------T------------G----A-------T---TT--TG-------------TA--GGGTAAC--A------A----------------------ATAT------TGAGTTTGTTACACTAAGGGA-TG--tacaaatattgattttgtagggtaacaaatattgagtttgttacactaagggatgttgttacattaaagccacaaagcatttacacacttgatatagtata
gi|9 : ggacagtacgacggacggacggagatgggtagcactatatcccatcccattttaagacggtggtttaaacaacacgtaacaacattaaacaaataaattgtataaattgtgtaatttgctataatatatagagatatcatagagaagttgagttctgaaattttgttacatattgccacttagtttaacaaaatatgtttttaacaaaA----TGT---A-A---CA-A-CATCCCTTAGTGTAACAA-AC-TCAATATTTGTTACttgttacattaaagccacaaagcatttacacacttgatatagtata
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|17 ): AAAATGCTATGGTTAAAAAAAGCGGATTTTATAAAAATGATTTTTTGTCGGATTATCATGCGCGATAATAGCTATGTATGATTTGAGG
Unaligned ( gi|19 ): ACTAAAACGATCAATAGTAAAATTCATCAGATTGTTAAACAAGTATTAATGAAACA