lowQualScore : 2222 1 1111 11 1 444444444444444444 555555555555555555555555555 2222222222222222222222 1 1 1111111 1111 222222222 11 22222 111 2 1 1 1 1 1 1 777 1 444 6666 11 1 1 77777
lowQualScore : 1 6 99 0000 1 3 7 3 1111 33 0 55 1 1 4 777777777777777777 66 5 0 333333333333333333333333333 5 55 888 0 0 66 7 6 6 9999999999999999999999 0 2 3 6 5 9999999 8888 222222222 5 5 66 7 77 77777 9 4 222 0 5 7 5 6 7 6 6 7 7 000 5 666 5555 22 5 5 6 66666
lowQualScore : . . .. .... . . . . .... .. . .. . . . .................. .. . . ........................... . .. ... . . .. . . . ...................... . . . . . ....... .... ......... . . .. . .. ..... . . ... . . . . . . . . . . ... . ... .... .. . . . .....
lowQualScore : 4 7 22 7777 3 9 3 7 0000 88 4 55 4 9 4 555555555555555555 99 0 8 999999999999999999999999999 0 22 888 9 4 99 8 0 7 5555555555555555555555 7 7 5 3 7 6666666 4444 999999999 7 0 33 9 99 55555 0 7 888 0 5 0 0 0 0 0 0 0 0 000 0 000 0000 00 0 0 0 00000
consensus : GCGAAATCCATC-A--GANTTTAAATTCACCCAGTTACTGCAATCAACTA-ATGGTAATGTT-ATGAATGATTTATCGTA-TTATATATTCAATGCTC--TA-AGAT--TA-G--AAA-TAATACAATCCAAAATTGATA---TT----GATC----CA---TC---TCA-TTG-GTTA---AAATGTA--TATTTT-ATTTGTA--TTTG-TT--GTT--AAAATGATCTGACTATAAACATTTGTGAT-TTTG---TTA-ATA-GACGAGAAACT---------GTA-TAGTTTAAGTCTGAATAAA--AGTATGTTCTATTCTGTTCTGTNCTGTTCGTATGTCTATATATATTCGAAGGGCATAAATCGACATACCCCTGTGGTTTAAACGTTTGGGTGTTAATACTAGGTGTCACTATTATTTATCTCATTACTTAATATGTTTCATTTAAATTGTGAAATAAAGAACCTTAAAACTAACTTTTACTTGTTGTTTTTTTTTAAAACACCAGATATCAGTTTGTCTATTTATTTACGTAATTGGCATGGTTTCTTCGATATTGGACTGGTGAT-TTTATTAATGACTTACCAGTAAGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATCTGGTCTGCCAAATGAATAAAAGAAACATCAAACAACATCAACAAGAACAATAACAACAAACACAACAGCAATTATAGCCAACACTACCACCACCA--AC-AACAACACAAAACAACAACAC
Reference ( gi|1 ) : GCGAAATCCATC-A--GTTTCTAAATTCACCAAGTTACTGTAACCGACTA-ATAATAATATA-ATAAACGATTTATCGTA-TTATATATTCAATGCTC--TACAGAT--TA-G--AAA-TAACACAATCCAAAATTGATA---AT----AATC----C----TC---TTA-TTG-GTTA---AAATGTA--TATCTT-ATTTGTA-ATTTG-TT--GTT--AATATGACCAGACTATACACATCTGTGAT-TTTG---TGA-ATA-GGTGAGAAACT---------GTA-TAGTCTAAGTTCGACTAAA--AGTATTTTCTATTATGTTCTGTTCTGTTCATATGT-TATATATATTCGAAGGGCAAAAATCGACATACCCCTGTGGTTTAAACGTTTGGGTGTTAATACTAGGTGTAACTATTATTTATTTCATTTCTTAATATGTTTTACTTAAAATGTGAAATAAAGAACCTTAAAACTAACATTTACTTGTTG---TTTTTTAAAACACCAGATATCAGTTTGTCTATTTATTGACTT-ATTGGCATGGTTTCTTCGATATTGGACTGGTGATAATAATTAATGACTTACCAGTAAGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTATTCGGTCTGCCAAATGAATAAAAGAAACATGAAACAACATCAACCAGAACAATAACAACAAACGCAACAGCAATTATAGCCAACACTACCACCACCACCACCAACAACACAAAACAACAACACA
gi|4 : GCGCACTCCATCTA--GATT-TGAATTCATTTATTTACTACAATCAAC-A-ATCAAAATATACATGTA-GAGTTA-CA-A-TTACACATTTGATGCTC--CCAAGAT--AC-G--GAA-GAACAATACCTAAAATTGA-A---TT----CATCCTTGC----TC---TTATTTT-GTTG---AA---TA--TATTTCAATTTGTA-TTCTGTTT--GTTTGAA-ATGGCCAGACTATAT-TTTTTATAAT-GTTG---ATA-ATA-GACCTGAAACT---------GTA-GAGTTTACATCTGGATAAA--ATTATGTT
gi|11 : GCAAAATCAATC-ATTGTTT-TATATTAGTTCAGATATTGCAAACAACTG-ATAGCAATGCT-ATAAATTATTTATC-TAGTTATATATTCAATGCTC--TTCAGAT--CA-G--GAATTAAT-CTATCTTAAATTAATA---
gi|5 : tcattaCGAAAATCATT-A--GAATTTAAATTCACCCAGTTACTACAATCAA-TATATGGTAATGTT-ATGAATGTTTTATCGTA-TTATATATTCACT--TT--TA--------A-G--AAA-TAATACAATCTAAAGATGATA---TT----GATC----CA---TCCTATCA-TTA-GCTA---AGGTGTA--T
gi|3 : tctgttgctctgctaatattgtagatgagttcagttatgttttgatatataagaagttaaagatatttgaaaaaatatatatggagctattactacCGAAAATCATT-A--GAATTTAAATTCACCCAGTTACTACAATCAA-TATATGGTAATGTT-ATGAATGTTTTATCGTA-TTATATATTCACT--TT--TA--------A-G--AAA-TAATACAATCTAAAGATGATA---TT----GATC----CA---TCCTATCA-TTA-GCTA---AGGTGTA--Ttttaat
gi|8 : agccggatagagcgaaacgaaagactatggtgttatttctgtggctctgctgatattgaaaatgagttcagttatgttttgatatataagaagttaaagatatttgaaaaacttatatatggagctattactacATCCACC-A--GTTTTTAAATTCAACCAGTCACTGCAATCAGTTA-TGGGCAATGTT-ATAAATGATTTACCGTT-TTttta
gi|14 : tagcaataaaagactgtgtcaattctgtgcctctagtgatattgaagatgaggttcgtttcgtattgatatgttataagttaaaagatatttggagaaagtatatacgaagatattgttgaaaacCATC-A--GAATTTAAATTCACCATGTTACTACAATCAACAA-ATGGTAATGTT-ATGAATGCTTTATCGTA-TTATATATTCACT--TT--TA--------A-G--AAA-TAATACAA
gi|2 : agtCTGTAATCGACAA-ATAATAATATA-ATAAATGAATTATCGTT-TTATATATTCAATGCTC--TACAGAT--TA-G--AAA-TAACACAGTCCAAGATTGATA---AT----GATC----CAACCTC---TTA-TTG-GTTA---AAATGTA--TATTTT-ATTTGTA-ATTTG-TT--GTA--AATATGACCTGACTATAAACATCTGTGAT-TTTG---TGA-ATA-GGTGAGAAACT---------GTA-TAGTCTAAGTTCGACTAAA--AGTATGTTCTATTCTGTTCTGTTCTGTTCATATGT-TATATATATTCGAAGGGCATAAATCGACATACCCCTGTGGTTTAAACGTTTGGGTGTTAATACTAGGTGTCACTATTATTTATCTCATTACTTAATATGTTTCATTTAAATTGTGAAATAAAGAACCTTAAAACTAACTTTTACTTGTTGTTTTTTTTTAAAACACCAGATATCAGTTTGTCTATTTATTTACGTAATTGGCATGGTTTCTTCGATATTGGACTGGTGAT-TTTATTAATGACTTACCAGTAAGA
gi|7 : tatttggatttcaatacttacactctCTA-ATAGTAATAGT-GTAAAGAATTTATGATA-TTATACAGTCAATGCTT--C---GATGCTATG--ACA-TAACACAATCCAAAATTGATA---TTGACCAATG----C----TC---TTA-TTGCTTTAATTAAATTTAACTTTTTT-ATTT-----TTTT-TT--ATT--GAAATGATCTGATTAGCAACATATGTGAG-TTTGTTTTGT-ATA-------AATCT---------GTT-TAGTATAAATCTGAATAAAGTAGAATCGTCTATTCTGTTnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnatctggtctgccaaatgaataaaagaaacatcaaacaacatcaacaagaacaataacaacaaacacaacagcaattatagccaacactaccaccaccaacaacaacacaaaacaacaacac
gi|6 : tgcaaatagATTTAT---A-TTATAT--TTAACTTTCATTA-GGAC--TG-GTTAAA-CA-TACAA--CAAAAATGATA---TT----GACC----CATTCTC---TCG-TTT-GTTA---AAATGAA--T-TTTT-ATTTGT--------------T--AAAATGATCTGATTATAAACATTTGTAAT-TTTG---TTA-GTA-CATGAGAAACTATTTTCTTTGTAGTAGTTTAAATGAGAATAAA--CGTAT-----ATTCTGTTCTGTCC---TTGTATGTCTAT-TAT
gi|9 : taatacatttgctatatgttATCCAAAATTGATATTGATC---AATC----A----TA---TCA-TTG-GTCA---AAATG----TATTTT-ATTT-TATACTTA-TTTGGTT--AAAATGATCTGACAATAAACA--TGTGCTATTTGAT-TAA-ATA-AACGAGAAAAT---------GTA-TCGTTTAAGT----CTAAA--ct
gi|12 : gcattTA-TTG-TTTA---AAATGTA--TTTTAT-ATTTATA-TCTTGCTT--GTT--TAAATAATCTGACTTTAAACATTTGTGAT-TTTG---TTA-AAACAATGAGAAACT----------------TTTACGTCTGAATAAA--AGTA-----TGGTATGTTCTGTACTtaa
gi|15 : TTTGTAAC-TTTG---TTATATA-GAAGAGAAACT---------GTA-TAGTTTAAGTCTGAATAAA--AGTt
gi|2 : taaatATCTGGTCTGCCAAATGAATAAAAGAAACATCAAACAACATCAACAAGAACAATAACAACAAACACAACAGCAATTATAGCCAACACTACCACCACCA--AC-AACAACACAAAACAACAACAC
3 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|10 ): CAAACTCCATCAGTATTTAAACTCATTCATCCCACAAAGAAATACATCAAAATATTATATATTCAAAACTCTCATGCTCCCAAGATATTAAGAATCAACACAAAGTTAAATTGATCTATTCTCTCATTTTTTGTTTGTTTCAA
Unaligned ( gi|13 ): GACAATTTTGTACCTTTGGTGACATTGAAAATGAGTTTCATTTTGAGTTGATTTGTGATTTATTTAATAATATTCTCAGAAAGTACAATATAATATTATTAGCAAACTCCATCAGTATTTAAACTCA
Unaligned ( gi|16 ): GCAATCAGTTATGGGCAATGTTATAAATGATTTACCGTTT
Alignments
lowQualScore : 1111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 11 33333333333333333333333333333 4444444444444444 1111 111111111111 1111 222222222 2 222 1 22 2222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222 3333
lowQualScore : 5 77 22 44 8 3 3 55 3 33333333333333333333333333333 4 55 55 4 0 4444444444444444 8 777 7 66 0000 4 3 555555555555 5 3 1 888 5 5 0000 000000000 5 77 55 1 7 0 3 7 4 2 4 4 4 111 3 2 5 44 4 7777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777 2 3 8888
lowQualScore : . .. .. .. . . . .. . ............................. . .. .. . . ................ . ... . .. .... . . ............ . . . ... . . .... ......... . .. .. . . . . . . . . . . ... . . . .. . ............................................................................................................................... . . ....
lowQualScore : 7 99 00 33 0 6 3 00 6 99999999999999999999999999999 0 55 55 0 8 0000000000000000 9 888 3 11 0000 4 0 444444444444 7 2 0 888 0 0 4444 000000000 0 99 55 0 3 7 3 3 0 5 0 0 0 555 0 5 5 00 0 0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 5 0 5555
consensus : GCGAAATCCATC-A--GANTTTAAATTCACCCAGTTACTGCAATCAACTA-ATGGTAATGT-TATAAATG--ATTTATCGTA-TTATATATTCA--------ATGCT-C--T-A-AG--AT-TA-G--AA--A-TAATACAATCCAAAATTGATATTGATCC---A----T---C---TCATTG-GTTA---AAATGTA--T---ATTTTA-TTTGTA-T-T-TG-TT-GTT-AAAATGACCTGACTATAAACATTTGTGATTTTGTT---A-A-TA-GACGAGAAAC---------TGTA-TAGTTTAAGTCTGAATAAA--AGTATGTTCTATTCTGTTCTGTTCTGTTCGTATGT-TATATATATTCGAAGGGCANAAATCGACATACCCCTGTGGTTTAAACGTTTGGGTGTTAATACTAGGTGTNACTATTATTTATCTCATTNCTTAATATGTTTCACTTAAANTGTGAAATAAAGAACCTTAAAACTAACNTTTACTTGTTGTTTTTTTTTAAAACACCAGATATCAGTTTGTCTATTTATTNACNTAATTGGCATGGTTTCTTCGATATTGGACTGGTGATANTNATTAATGACTTACCAGTAAGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTATCCGGTCTGCCAAATGAATAAAAGAAACATNAAACAACATCAACNAGAACAATAACAACAAACGCAACAGCAATTATAGCCAACACTACCACCACCACCACCAACAACACAAAACAACAACAC
Reference ( family-361 ) : GCGAAATCCATC-A--GANTTTAAATTCACCCAGTTACTGCAATCAACTA-ATGGTAATGT-TATGAATG--ATTTATCGTA-TTATATATTCA--------ATGCT-C--T-A-AG--AT-TA-G--AA--A-TAATACAATCCAAAATTGATATTGATCC---A----T---C---TCATTG-GTTA---AAATGTA--T---ATTTTA-TTTGTA-T-T-TG-TT-GTT-AAAATGATCTGACTATAAACATTTGTGATTTTGTT---A-A-TA-GACGAGAAAC---------TGTA-TAGTTTAAGTCTGAATAAA--AGTATGTTCTATTCTGTTCTGTNCTGTTCGTATGTCTATATATATTCGAAGGGCATAAATCGACATACCCCTGTGGTTTAAACGTTTGGGTGTTAATACTAGGTGTCACTATTATTTATCTCATTACTTAATATGTTTCATTTAAATTGTGAAATAAAGAACCTTAAAACTAACTTTTACTTGTTGTTTTTTTTTAAAACACCAGATATCAGTTTGTCTATTTATTTACGTAATTGGCATGGTTTCTTCGATATTGGACTGGTGAT-TTTATTAATGACTTACCAGTAAGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATCTGGTCTGCCAAATGAATAAAAGAAACATCAAACAACATCAACAAGAACAATAACAACAAACACAACAGCAATTATAGCCAACACTACCACCACCA--A-CAACAACACAAAACAACAACAC
gi|1 : GCGAAATCCATC-A--GTTTCTAAATTCACCAAGTTACTGTAACCGACTA-ATAATAATAT-AATAAACG--ATTTATCGTA-TTATATATTCA--------ATGCT-C--T-ACAG--AT-TA-G--AA--A-TAACACAATCCAAAATTGATAATAATCC--------T---C---TTATTG-GTTA---AAATGTA--T---ATCTTA-TTTGTAAT-T-TG-TT-GTT-AATATGACCAGACTATACACATCTGTGATTTTGTG---A-A-TA-GGTGAGAAAC---------TGTA-TAGTCTAAGTTCGACTAAA--AGTATTTTCTATTATGTTCTGTTCTGTTCATATGT-TATATATATTCGAAGGGCAAAAATCGACATACCCCTGTGGTTTAAACGTTTGGGTGTTAATACTAGGTGTAACTATTATTTATTTCATTTCTTAATATGTTTTACTTAAAATGTGAAATAAAGAACCTTAAAACTAACATTTACTTGTTG---TTTTTTAAAACACCAGATATCAGTTTGTCTATTTATTGACTT-ATTGGCATGGTTTCTTCGATATTGGACTGGTGATAATAATTAATGACTTACCAGTAAGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTATTCGGTCTGCCAAATGAATAAAAGAAACATGAAACAACATCAACCAGAACAATAACAACAAACGCAACAGCAATTATAGCCAACACTACCACCACCACCACCAACAACACAAAACAACAACAC
gi|10 : TA-TTATATATTCAAAACTCTCATGCTCC--C-A-AGATAT-TA-A--GA--A-T----CAACACAAAGTTAA-ATTGATCT---ATTC-T---C---TCATTa
gi|11 : caaactccatcagtatttaaactcattcatcccacaaagaaatacatcaaaaGCAAAATCAATC-ATTG-TTTTATATTAGTTCAGATATTGCAAACAACTG-ATAGCAATGC-TATAAATT--ATTTATC-TAGTTATATATTCA--------ATGCT-CT-T-C-AG--AT-CA-G--GA--ATTAAT-CTATCTTAAATTAATAttttgtttgtttcaa
gi|12 : tcattaATTG-TTTA---AAATGTA--T---TTTATA-TTTATA-TCT-TGCTT-GTT-TAAATAATCTGACTTTAAACATTTGTGATTTTGTT---A-A-AACAATGAGAAAC---------T-------TTTACGTCTGAATAAA--AGTATGGTATGTTCTGTACT
gi|14 : tCATC-A--GAATTTAAATTCACCATGTTACTACAATCAACAA-ATGGTAATGT-TATGAATG--CTTTATCGTA-TTATATATTCA--------CT--T-T--T-A---------A-G--AA--A-TAATACAAt
gi|15 : agtTAAAT-TTTGTAACTTTGTT---ATA-TA-GAAGAGAAAC---------TGTA-TAGTTTAAGTCTGAATAAA--AGT
gi|16 : GCAATCAGTTA-TGGGCAATGT-TATAAATG--ATTTACCGT
gi|2 : CTGTAATCGACAA-ATAATAATAT-AATAAATG--AATTATCGTT-TTATATATTCA--------ATGCT-C--T-ACAG--AT-TA-G--AA--A-TAACACAGTCCAAGATTGATAATGATCC---AACC-T---C---TTATTG-GTTA---AAATGTA--T---ATTTTA-TTTGTAAT-T-TG-TT-GTA-AATATGACCTGACTATAAACATCTGTGATTTTGTG---A-A-TA-GGTGAGAAAC---------TGTA-TAGTCTAAGTTCGACTAAA--AGTATGTTCTATTCTGTTCTGTTCTGTTCATATGT-TATATATATTCGAAGGGCATAAATCGACATACCCCTGTGGTTTAAACGTTTGGGTGTTAATACTAGGTGTCACTATTATTTATCTCATTACTTAATATGTTTCATTTAAATTGTGAAATAAAGAACCTTAAAACTAACTTTTACTTGTTGTTTTTTTTTAAAACACCAGATATCAGTTTGTCTATTTATTTACGTAATTGGCATGGTTTCTTCGATATTGGACTGGTGAT-TTTATTAATGACTTACCAGTAAGAtt
gi|2 : tatttggatttcaatacttacactctATCTGGTCTGCCAAATGAATAAAAGAAACATCAAACAACATCAACAAGAACAATAACAACAAACACAACAGCAATTATAGCCAACACTACCACCACCA--A-CAACAACACAAAACAACAACACnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnatctggtctgccaaatgaataaaagaaacatcaaacaacatcaacaagaacaataacaacaaacacaacagcaattatagccaacactaccaccaccaacaacaacacaaaacaacaacac
gi|3 : tatttggatttcaatacttacactctctgtaatcgacaaataataatataataaatgaattatcgttttatatattcaatgctctacagattagaaataacacagtccaagattgataatgatccaacctcttattggttaaaatgtatattttatttgtaatttgttgtaaatatgacctgactataaacatctgtgattttgtgaataggtgagaaactgtatagtctaagttcgactaaaagtatgttctattctgttctgttctgttcatatgttatatatattcgaagggcataaatcgacatacccctgtggtttaaacgtttgggtgttaatactaggtgtcactattatttatctcattacttaatatgtttcatttaaattgtgaaataaagaaccttaaaactaacttttacttgttgtttttttttaaaacaccagatatcagtttgtctatttatttacgtaattggcatggtttcttcgatattggactggtgattttattaatgacttaccagtaagannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnCGAAAATCATT-A--GAATTTAAATTCACCCAGTTACTACAATCAA-TATATGGTAATGT-TATGAATG--TTTTATCGTA-TTATATATTCA--------CT--T-T--T-A---------A-G--AA--A-TAATACAATCTAAAGATGATATTGATCC---A----T---CCTATCATTA-GCTA---AG--GTG--T---ATTTTA-
gi|4 : agccggatagagcgaaacgaaagactatggtgttatttctgtggctctgctgatattgaaaatgagttcagttatgttttgatatataagaagttaaagatatttgaaaaacttatatatggagctattactacGCGCACTCCATCTA--GA-TTTGAATTCATTTATTTACTACAATCAAC-A-ATCAAAATATACATGTA-G--AGTTA-CA-A-TTACACATTTG--------ATGCT-C--CCA-AG--ATACG-G--AAGAA-CAATAC---CTAAAATTGA-ATTCATCCTTGC----T---C---TTATTTTGTTG---AA---TA--T---ATTTCAATTTGTA-T-TCTG-TTTGTTTGAAATGGCCAGACTATATTT-TTTATAATGTTGAT---A-A-TA-GACCTGAAAC---------TGTA-GAGTTTACATCTGGATAAA--ATTATGTT
gi|5 : CGAAAATCATT-A--GAATTTAAATTCACCCAGTTACTACAATCAA-TATATGGTAATGT-TATGAATG--TTTTATCGTA-TTATATATTCA--------CT--T-T--T-A---------A-G--AA--A-TAATACAATCTAAAGATGATATTGATCC---A----T---CCTATCATTA-GCTA---AG--GTG--T---ATTTTA-
gi|6 : tctgttgctctgctaatattgtagatgagttcagttatgttttgatatataagaagttaaagatatttgaaaaaatatatatggagctattactacTGC-TAT--ATGTTATTTAT---A-TTATAT--TTA--------ACTTT-CATT-A-GG--AC-TG-GTTAA--A-CA-TACAA--CAAAAATGATATTGACCC---A----TTCTC---TCGTTT-GTTA---AAATGAA--T----TTTTA-TTTGT--------------T-AAAATGATCTGATTATAAACATTTGTAATTTTGTT---A-G-TA-CATGAGAAACTATTTTCTTTGTAGTAGTTTAAATGAGAATAAA--CGTA-----TATTCTGTTCTGTCC---TTGTATGTCTAT-TATat
gi|7 : taatacattTGCAAATAGCTA-ATAGTAATAG-TGTAAAGA--ATTTATGATA-TTATACAGTCA--------ATGCT-T--C-G-AT--GC-TATG--AC--A-TAACACAATCCAAAATTGATATTGA-CC---AATGCT---C---TTATTGCTTTAATTAAATTTAACT---TTTTTA-TTT----T-T-TT-TT-ATT-GAAATGATCTGATTAGCAACATATGTGAGTTTGTTTTGT-A-TA-------AATC---------TGTT-TAGTATAAATCTGAATAAAGTAGAATCGTCTATTCTGTTct
gi|8 : ATCCACC-A--GTTTTTAAATTCAACCAGTCACTGCAATCAGTTA-TGGGCAATGT-TATAAATG--ATTTACCGTT-TT
gi|9 : tagcaataaaagactgtgtcaattctgtgcctctagtgatattgaagatgaggttcgtttcgtattgatatgttataagttaaaagatatttggagaaagtatatacgaagatattgttgaaaacATCCAAAATTGATATTGATCA---A----T---CATATCATTG-GTCA---AAATGTA--TTTTATTTTA-TACTTA-T-T-TG----GTT-AAAATGATCTGACAATAAACATGTGCTATTTGATT---A-AATA-AACGAGAAAA---------TGTA-TCGTTTAAGTCTAAATAA
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|13 ): GACAATTTTGTACCTTTGGTGACATTGAAAATGAGTTTCATTTTGAGTTGATTTGTGATTTATTTAATAATATTCTCAGAAAGTACAATATAATATTATTAGCAAACTCCATCAGTATTTAAACTCA
Alignments
lowQualScore : 11111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 11 333333333333 4444444444444444 1111 1111111111111 1111 222222222 222 1 11 22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222 2222
lowQualScore : 5 77 22 44 8 666 4 99 333333333333 4 66 66 4 4444444444444444 8 777 7 66 0000 4 3 5555555555555 5 3 1 888 5 5 0000 000000000 5 77 1 6 0 1 1 1 1 1 111 1 1 5 66 1 55555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555 1 1 3333
lowQualScore : . .. .. .. . ... . .. ............ . .. .. . ................ . ... . .. .... . . ............. . . . ... . . .... ......... . .. . . . . . . . . ... . . . .. . ............................................................................................................................. . . ....
lowQualScore : 7 99 00 33 0 444 0 66 444444444444 4 11 11 4 2222222222222222 9 888 3 11 0000 4 0 4444444444444 7 2 0 888 0 0 4444 000000000 0 99 0 7 7 0 0 0 0 0 555 0 0 5 55 0 00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 0 0 5555
consensus : GCGAAATCCATC-A--GANTTTAAATTCACCCAGTTACTGCAATCAACTA-ATGGTAATGTTATAAATG---ATTTATCGTA-TTATATATTCAATGCTC--T-A-AGAT-TA-G--AA--A-TAATACAATCCAAAATTGATATTGATCC---A----T---C-TATCATTG-GTTA---AAATGTA--T---ATTTTA-TTTGT-A-T-T-TG-TT-GTT-AAAATGACCTGACTATAAACATTTGTGATTTTGTT---A-A-TA-GACGAGAAAC---------TGTA-TAGTTTAAGTCTGAATAAA--AGTATGTTCTATTCTGTTCTGTTCTGTTCGTATGTTATATATATTCGAAGGGCANAAATCGACATACCCCTGTGGTTTAAACGTTTGGGTGTTAATACTAGGTGTNACTATTATTTATCTCATTNCTTAATATGTTTCACTTAAANTGTGAAATAAAGAACCTTAAAACTAACNTTTACTTGTTGTTTTTTTTTAAAACACCAGATATCAGTTTGTCTATTTATTNACNTAATTGGCATGGTTTCTTCGATATTGGACTGGTGATANTNATTAATGACTTACCAGTAAGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTATCCGGTCTGCCAAATGAATAAAAGAAACATNAAACAACATCAACNAGAACAATAACAACAAACGCAACAGCAATTATAGCCAACACTACCACCACCACCACCAACAACACAAAACAACAACAC
Reference ( family-361 ) : GCGAAATCCATC-A--GANTTTAAATTCACCCAGTTACTGCAATCAACTA-ATGGTAATGTTATAAATG---ATTTATCGTA-TTATATATTCAATGCTC--T-A-AGAT-TA-G--AA--A-TAATACAATCCAAAATTGATATTGATCC---A----T---C---TCATTG-GTTA---AAATGTA--T---ATTTTA-TTTGT-A-T-T-TG-TT-GTT-AAAATGACCTGACTATAAACATTTGTGATTTTGTT---A-A-TA-GACGAGAAAC---------TGTA-TAGTTTAAGTCTGAATAAA--AGTATGTTCTATTCTGTTCTGTTCTGTTCGTATGTTATATATATTCGAAGGGCANAAATCGACATACCCCTGTGGTTTAAACGTTTGGGTGTTAATACTAGGTGTNACTATTATTTATCTCATTNCTTAATATGTTTCACTTAAANTGTGAAATAAAGAACCTTAAAACTAACNTTTACTTGTTGTTTTTTTTTAAAACACCAGATATCAGTTTGTCTATTTATTNACNTAATTGGCATGGTTTCTTCGATATTGGACTGGTGATANTNATTAATGACTTACCAGTAAGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTATCCGGTCTGCCAAATGAATAAAAGAAACATNAAACAACATCAACNAGAACAATAACAACAAACGCAACAGCAATTATAGCCAACACTACCACCACCACCACCAACAACACAAAACAACAACAC
gi|1 : GCGAAATCCATC-A--GTTTCTAAATTCACCAAGTTACTGTAACCGACTA-ATAATAATATAATAAACG---ATTTATCGTA-TTATATATTCAATGCTC--T-ACAGAT-TA-G--AA--A-TAACACAATCCAAAATTGATAATAATCC--------T---C---TTATTG-GTTA---AAATGTA--T---ATCTTA-TTTGTAA-T-T-TG-TT-GTT-AATATGACCAGACTATACACATCTGTGATTTTGTG---A-A-TA-GGTGAGAAAC---------TGTA-TAGTCTAAGTTCGACTAAA--AGTATTTTCTATTATGTTCTGTTCTGTTCATATGTTATATATATTCGAAGGGCAAAAATCGACATACCCCTGTGGTTTAAACGTTTGGGTGTTAATACTAGGTGTAACTATTATTTATTTCATTTCTTAATATGTTTTACTTAAAATGTGAAATAAAGAACCTTAAAACTAACATTTACTTGTTG---TTTTTTAAAACACCAGATATCAGTTTGTCTATTTATTGACTT-ATTGGCATGGTTTCTTCGATATTGGACTGGTGATAATAATTAATGACTTACCAGTAAGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTATTCGGTCTGCCAAATGAATAAAAGAAACATGAAACAACATCAACCAGAACAATAACAACAAACGCAACAGCAATTATAGCCAACACTACCACCACCACCACCAACAACACAAAACAACAACAC
gi|11 : GCAAAATCAATC-ATTG-TTTTATATTAGTTCAGATATTGCAAACAACTG-ATAGCAATGCTATAAATT---ATTTATC-TAGTTATATATTCAATGCTCT-T-C-AGAT-CA-G--GA--ATTAAT-CTATCTTAAATTAATAa
gi|12 : tcattaATTG-TTTA---AAATGTA--T---TTTATA-TTTAT-A-TCT-TGCTT-GTT-TAAATAATCTGACTTTAAACATTTGTGATTTTGTT---A-A-AACAATGAGAAAC---------T-------TTTACGTCTGAATAAA--AGTATGGTATGTTCTGTACT
gi|14 : tCATC-A--GAATTTAAATTCACCATGTTACTACAATCAACAA-ATGGTAATGTTATGAATG---CTTTATCGTA-TTATATATTCACT--TT--T-A-------A-G--AA--A-TAATACAAt
gi|15 : agtTAAAT-TTTGTAACTTTGTT---ATA-TA-GAAGAGAAAC---------TGTA-TAGTTTAAGTCTGAATAAA--AGT
gi|16 : GCAATCAGTTA-TGGGCAATGTTATAAATG---ATTTACCGT
gi|2 : CTGTAATCGACAA-ATAATAATATAATAAATG---AATTATCGTT-TTATATATTCAATGCTC--T-ACAGAT-TA-G--AA--A-TAACACAGTCCAAGATTGATAATGATCC---AACC-T---C---TTATTG-GTTA---AAATGTA--T---ATTTTA-TTTGT-AAT-T-TG-TT-GTA-AATATGACCTGACTATAAACATCTGTGATTTTGTG---A-A-TA-GGTGAGAAAC---------TGTA-TAGTCTAAGTTCGACTAAA--AGTATGTTCTATTCTGTTCTGTTCTGTTCATATGTTATATATATTCGAAGGGCATAAATCGACATACCCCTGTGGTTTAAACGTTTGGGTGTTAATACTAGGTGTCACTATTATTTATCTCATTACTTAATATGTTTCATTTAAATTGTGAAATAAAGAACCTTAAAACTAACTTTTACTTGTTGTTTTTTTTTAAAACACCAGATATCAGTTTGTCTATTTATTTACGTAATTGGCATGGTTTCTTCGATATTGGACTGGTGAT-TTTATTAATGACTTACCAGTAAGAtt
gi|2 : tatttggatttcaatacttacactctATCTGGTCTGCCAAATGAATAAAAGAAACATCAAACAACATCAACAAGAACAATAACAACAAACACAACAGCAATTATAGCCAACACTACCACCACCA--A-CAACAACACAAAACAACAACACnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnatctggtctgccaaatgaataaaagaaacatcaaacaacatcaacaagaacaataacaacaaacacaacagcaattatagccaacactaccaccaccaacaacaacacaaaacaacaacac
gi|3 : tatttggatttcaatacttacactctctgtaatcgacaaataataatataataaatgaattatcgttttatatattcaatgctctacagattagaaataacacagtccaagattgataatgatccaacctcttattggttaaaatgtatattttatttgtaatttgttgtaaatatgacctgactataaacatctgtgattttgtgaataggtgagaaactgtatagtctaagttcgactaaaagtatgttctattctgttctgttctgttcatatgttatatatattcgaagggcataaatcgacatacccctgtggtttaaacgtttgggtgttaatactaggtgtcactattatttatctcattacttaatatgtttcatttaaattgtgaaataaagaaccttaaaactaacttttacttgttgtttttttttaaaacaccagatatcagtttgtctatttatttacgtaattggcatggtttcttcgatattggactggtgattttattaatgacttaccagtaagannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnCGAAAATCATT-A--GAATTTAAATTCACCCAGTTACTACAATCAA-TATATGGTAATGTTATGAATG---TTTTATCGTA-TTATATATTCACT--TT--T-A-------A-G--AA--A-TAATACAATCTAAAGATGATATTGATCC---A----T---CCTATCATTA-GCTA---AG--GTG--T---ATTTTA-
gi|4 : agccggatagagcgaaacgaaagactatggtgttatttctgtggctctgctgatattgaaaatgagttcagttatgttttgatatataagaagttaaagatatttgaaaaacttatatatggagctattactacGCGCACTCCATCTA--GA-TTTGAATTCATTTATTTACTACAATCAAC-A-ATCAAAAT---ATACATGTAGAGTTA-CA-A-TTACACATTTGATGCTC--CCA-AGATACG-G--AAGAA-CAATAC---CTAAAATTGA-ATTCATCCTTGC----T---C---TTATTTTGTTG---AA---TA--T---ATTTCAATTTGT-A-T-TCTG-TTTGTTTGAAATGGCCAGACTATATTT-TTTATAATGTTGAT---A-A-TA-GACCTGAAAC---------TGTA-GAGTTTACATCTGGATAAA--ATTATGTT
gi|5 : CGAAAATCATT-A--GAATTTAAATTCACCCAGTTACTACAATCAA-TATATGGTAATGTTATGAATG---TTTTATCGTA-TTATATATTCACT--TT--T-A-------A-G--AA--A-TAATACAATCTAAAGATGATATTGATCC---A----T---CCTATCATTA-GCTA---AG--GTG--T---ATTTTA-
gi|6 : tctgttgctctgctaatattgtagatgagttcagttatgttttgatatataagaagttaaagatatttgaaaaaatatatatggagctattactacTGCTATATGTT---ATTTAT---A-TTATAT--TTAACTTTCATT-A-GGAC-TG-GTTAA--A-CA-TACAA--CAAAAATGATATTGACCC---A----TTCTC---TCGTTT-GTTA---AAATGAA--T----TTTTA-TTTGT---------------T-AAAATGATCTGATTATAAACATTTGTAATTTTGTT---A-G-TA-CATGAGAAACTATTTTCTTTGTAGTAGTTTAAATGAGAATAAA--CGTATATTCTGTTCTGTCCT----TGTATGTCTATTATat
gi|7 : taatacattTGCAAATAGCTA-ATAGTAATAGTGTAAAGA---ATTTATGATA-TTATACAGTCAATGCTT--C-G-ATGC-TATG--AC--A-TAACACAATCCAAAATTGATATTGA-CC---AATGCT---C---TTATTGCTTTAATTAAATTTAACT---TTTTTA-TTT-----T-T-TT-TT-ATT-GAAATGATCTGATTAGCAACATATGTGAGTTTGTTTTGT-A-TA-------AATC---------TGTT-TAGTATAAATCTGAATAAAGTAGAATCGTCTATTCTGTTct
gi|8 : ATCCACC-A--GTTTTTAAATTCAACCAGTCACTGCAATCAGTTA-TGGGCAATGTTATAAATG---ATTTACCGTT-TT
gi|9 : tagcaataaaagactgtgtcaattctgtgcctctagtgatattgaagatgaggttcgtttcgtattgatatgttataagttaaaagatatttggagaaagtatatacgaagatattgttgaaaacATCCAAAATTGATATTGATCA---A----T---CATATCATTG-GTCA---AAATGTA--TTTTATTTTA-TACTT-A-T-T-TG----GTT-AAAATGATCTGACAATAAACATGTGCTATTTGATT---A-AATA-AACGAGAAAA---------TGTA-TCGTTTAAGTCTAAATAA
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|10 ): CAAACTCCATCAGTATTTAAACTCATTCATCCCACAAAGAAATACATCAAAATATTATATATTCAAAACTCTCATGCTCCCAAGATATTAAGAATCAACACAAAGTTAAATTGATCTATTCTCTCATTTTTTGTTTGTTTCAA
Unaligned ( gi|13 ): GACAATTTTGTACCTTTGGTGACATTGAAAATGAGTTTCATTTTGAGTTGATTTGTGATTTATTTAATAATATTCTCAGAAAGTACAATATAATATTATTAGCAAACTCCATCAGTATTTAAACTCA
Alignments
lowQualScore : 11111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 11 333333333333 2 1111 111111111111 1111 222222222 222 1 11 22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222 2222
lowQualScore : 5 77 22 44 8 666 4 99 333333333333 4 66 66 4 55 5 5 9 8 777 7 66 0000 4 3 555555555555 5 3 1 888 5 5 0000 000000000 5 77 1 6 0 1 1 1 1 1 111 1 1 5 66 1 55555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555 1 1 3333
lowQualScore : . .. .. .. . ... . .. ............ . .. .. . .. . . . . ... . .. .... . . ............ . . . ... . . .... ......... . .. . . . . . . . . ... . . . .. . ............................................................................................................................. . . ....
lowQualScore : 7 99 00 33 0 444 0 66 444444444444 4 11 11 4 44 0 0 1 9 888 3 11 0000 4 0 444444444444 7 2 0 888 0 0 4444 000000000 0 99 0 7 7 0 0 0 0 0 555 0 0 5 55 0 00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 0 0 5555
consensus : GCGAAATCCATC-A--GANTTTAAATTCACCCAGTTACTGCAATCAACTA-ATGGTAATGTTATAAATG---ATTTATCGTA-TTATATATTCAATGCTC--T-A-AGAT-TA-G--AA--A-TAATACAATCCAAAATTGATATTGATCCA-T-C-TCTCATTG-GTTA---AAATGTA--T---ATTTTA-TTTGTA-T-T-TG-TT-GTT-AAAATGACCTGACTATAAACATTTGTGATTTTGTT---A-A-TA-GACGAGAAAC---------TGTA-TAGTTTAAGTCTGAATAAA--AGTATGTTCTATTCTGTTCTGTTCTGTTCGTATGTTATATATATTCGAAGGGCANAAATCGACATACCCCTGTGGTTTAAACGTTTGGGTGTTAATACTAGGTGTNACTATTATTTATCTCATTNCTTAATATGTTTCACTTAAANTGTGAAATAAAGAACCTTAAAACTAACNTTTACTTGTTGTTTTTTTTTAAAACACCAGATATCAGTTTGTCTATTTATTNACNTAATTGGCATGGTTTCTTCGATATTGGACTGGTGATANTNATTAATGACTTACCAGTAAGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTATCCGGTCTGCCAAATGAATAAAAGAAACATNAAACAACATCAACNAGAACAATAACAACAAACGCAACAGCAATTATAGCCAACACTACCACCACCACCACCAACAACACAAAACAACAACAC
Reference ( family-361 ) : GCGAAATCCATC-A--GANTTTAAATTCACCCAGTTACTGCAATCAACTA-ATGGTAATGTTATAAATG---ATTTATCGTA-TTATATATTCAATGCTC--T-A-AGAT-TA-G--AA--A-TAATACAATCCAAAATTGATATTGATCCA-T-C-TATCATTG-GTTA---AAATGTA--T---ATTTTA-TTTGTA-T-T-TG-TT-GTT-AAAATGACCTGACTATAAACATTTGTGATTTTGTT---A-A-TA-GACGAGAAAC---------TGTA-TAGTTTAAGTCTGAATAAA--AGTATGTTCTATTCTGTTCTGTTCTGTTCGTATGTTATATATATTCGAAGGGCANAAATCGACATACCCCTGTGGTTTAAACGTTTGGGTGTTAATACTAGGTGTNACTATTATTTATCTCATTNCTTAATATGTTTCACTTAAANTGTGAAATAAAGAACCTTAAAACTAACNTTTACTTGTTGTTTTTTTTTAAAACACCAGATATCAGTTTGTCTATTTATTNACNTAATTGGCATGGTTTCTTCGATATTGGACTGGTGATANTNATTAATGACTTACCAGTAAGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTATCCGGTCTGCCAAATGAATAAAAGAAACATNAAACAACATCAACNAGAACAATAACAACAAACGCAACAGCAATTATAGCCAACACTACCACCACCACCACCAACAACACAAAACAACAACAC
gi|1 : GCGAAATCCATC-A--GTTTCTAAATTCACCAAGTTACTGTAACCGACTA-ATAATAATATAATAAACG---ATTTATCGTA-TTATATATTCAATGCTC--T-ACAGAT-TA-G--AA--A-TAACACAATCCAAAATTGATAATAATCC--T-C-T--TATTG-GTTA---AAATGTA--T---ATCTTA-TTTGTAAT-T-TG-TT-GTT-AATATGACCAGACTATACACATCTGTGATTTTGTG---A-A-TA-GGTGAGAAAC---------TGTA-TAGTCTAAGTTCGACTAAA--AGTATTTTCTATTATGTTCTGTTCTGTTCATATGTTATATATATTCGAAGGGCAAAAATCGACATACCCCTGTGGTTTAAACGTTTGGGTGTTAATACTAGGTGTAACTATTATTTATTTCATTTCTTAATATGTTTTACTTAAAATGTGAAATAAAGAACCTTAAAACTAACATTTACTTGTTG---TTTTTTAAAACACCAGATATCAGTTTGTCTATTTATTGACTT-ATTGGCATGGTTTCTTCGATATTGGACTGGTGATAATAATTAATGACTTACCAGTAAGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTATTCGGTCTGCCAAATGAATAAAAGAAACATGAAACAACATCAACCAGAACAATAACAACAAACGCAACAGCAATTATAGCCAACACTACCACCACCACCACCAACAACACAAAACAACAACAC
gi|11 : GCAAAATCAATC-ATTG-TTTTATATTAGTTCAGATATTGCAAACAACTG-ATAGCAATGCTATAAATT---ATTTATC-TAGTTATATATTCAATGCTCT-T-C-AGAT-CA-G--GA--ATTAAT-CTATCTTAAATTAATAa
gi|12 : tcattaATTG-TTTA---AAATGTA--T---TTTATA-TTTATA-TCT-TGCTT-GTT-TAAATAATCTGACTTTAAACATTTGTGATTTTGTT---A-A-AACAATGAGAAAC---------T-------TTTACGTCTGAATAAA--AGTATGGTATGTTCTGTACT
gi|14 : tCATC-A--GAATTTAAATTCACCATGTTACTACAATCAACAA-ATGGTAATGTTATGAATG---CTTTATCGTA-TTATATATTCACT--TT--T-A-------A-G--AA--A-TAATACAAt
gi|15 : agtTAAAT-TTTGTAACTTTGTT---ATA-TA-GAAGAGAAAC---------TGTA-TAGTTTAAGTCTGAATAAA--AGT
gi|16 : GCAATCAGTTA-TGGGCAATGTTATAAATG---ATTTACCGT
gi|2 : CTGTAATCGACAA-ATAATAATATAATAAATG---AATTATCGTT-TTATATATTCAATGCTC--T-ACAGAT-TA-G--AA--A-TAACACAGTCCAAGATTGATAATGATCCAAC-C-TCTTATTG-GTTA---AAATGTA--T---ATTTTA-TTTGTAAT-T-TG-TT-GTA-AATATGACCTGACTATAAACATCTGTGATTTTGTG---A-A-TA-GGTGAGAAAC---------TGTA-TAGTCTAAGTTCGACTAAA--AGTATGTTCTATTCTGTTCTGTTCTGTTCATATGTTATATATATTCGAAGGGCATAAATCGACATACCCCTGTGGTTTAAACGTTTGGGTGTTAATACTAGGTGTCACTATTATTTATCTCATTACTTAATATGTTTCATTTAAATTGTGAAATAAAGAACCTTAAAACTAACTTTTACTTGTTGTTTTTTTTTAAAACACCAGATATCAGTTTGTCTATTTATTTACGTAATTGGCATGGTTTCTTCGATATTGGACTGGTGAT-TTTATTAATGACTTACCAGTAAGAtt
gi|2 : tatttggatttcaatacttacactctATCTGGTCTGCCAAATGAATAAAAGAAACATCAAACAACATCAACAAGAACAATAACAACAAACACAACAGCAATTATAGCCAACACTACCACCACCA--A-CAACAACACAAAACAACAACACnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnatctggtctgccaaatgaataaaagaaacatcaaacaacatcaacaagaacaataacaacaaacacaacagcaattatagccaacactaccaccaccaacaacaacacaaaacaacaacac
gi|3 : tatttggatttcaatacttacactctctgtaatcgacaaataataatataataaatgaattatcgttttatatattcaatgctctacagattagaaataacacagtccaagattgataatgatccaacctcttattggttaaaatgtatattttatttgtaatttgttgtaaatatgacctgactataaacatctgtgattttgtgaataggtgagaaactgtatagtctaagttcgactaaaagtatgttctattctgttctgttctgttcatatgttatatatattcgaagggcataaatcgacatacccctgtggtttaaacgtttgggtgttaatactaggtgtcactattatttatctcattacttaatatgtttcatttaaattgtgaaataaagaaccttaaaactaacttttacttgttgtttttttttaaaacaccagatatcagtttgtctatttatttacgtaattggcatggtttcttcgatattggactggtgattttattaatgacttaccagtaagannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnCGAAAATCATT-A--GAATTTAAATTCACCCAGTTACTACAATCAA-TATATGGTAATGTTATGAATG---TTTTATCGTA-TTATATATTCACT--TT--T-A-------A-G--AA--A-TAATACAATCTAAAGATGATATTGATCCA-TCC-TATCATTA-GCTA---AG--GTG--T---ATTTTA-
gi|4 : agccggatagagcgaaacgaaagactatggtgttatttctgtggctctgctgatattgaaaatgagttcagttatgttttgatatataagaagttaaagatatttgaaaaacttatatatggagctattactacGCGCACTCCATCTA--GA-TTTGAATTCATTTATTTACTACAATCAAC-A-ATCAAAAT---ATACATGTAGAGTTA-CA-A-TTACACATTTGATGCTC--CCA-AGATACG-G--AAGAA-CAATAC---CTAAAATTGA-ATTCATCCT-TGC-TCTTATTTTGTTG---AA---TA--T---ATTTCAATTTGTA-T-TCTG-TTTGTTTGAAATGGCCAGACTATATTT-TTTATAATGTTGAT---A-A-TA-GACCTGAAAC---------TGTA-GAGTTTACATCTGGATAAA--ATTATGTT
gi|5 : CGAAAATCATT-A--GAATTTAAATTCACCCAGTTACTACAATCAA-TATATGGTAATGTTATGAATG---TTTTATCGTA-TTATATATTCACT--TT--T-A-------A-G--AA--A-TAATACAATCTAAAGATGATATTGATCCA-TCC-TATCATTA-GCTA---AG--GTG--T---ATTTTA-
gi|6 : tctgttgctctgctaatattgtagatgagttcagttatgttttgatatataagaagttaaagatatttgaaaaaatatatatggagctattactacTGCTATATGTT---ATTTAT---A-TTATAT--TTAACTTTCATT-A-GGAC-TG-GTTAA--A-CA-TACAA--CAAAAATGATATTGACCCA-TTC-TCTCGTTT-GTTA---AAATGAA--T----TTTTA-TTTGT--------------T-AAAATGATCTGATTATAAACATTTGTAATTTTGTT---A-G-TA-CATGAGAAACTATTTTCTTTGTAGTAGTTTAAATGAGAATAAA--CGTATATTCTGTTCTGTCCT----TGTATGTCTATTATat
gi|7 : taatacattTGCAAATAGCTA-ATAGTAATAGTGTAAAGA---ATTTATGATA-TTATACAGTCAATGCTT--C-G-ATGC-TATG--AC--A-TAACACAATCCAAAATTGATATTGACCAA-TGC-TCTTATTGCTTTAATTAAATTTAACT---TTTTTA-TTT----T-T-TT-TT-ATT-GAAATGATCTGATTAGCAACATATGTGAGTTTGTTTTGT-A-TA-------AATC---------TGTT-TAGTATAAATCTGAATAAAGTAGAATCGTCTATTCTGTTct
gi|8 : ATCCACC-A--GTTTTTAAATTCAACCAGTCACTGCAATCAGTTA-TGGGCAATGTTATAAATG---ATTTACCGTT-TT
gi|9 : tagcaataaaagactgtgtcaattctgtgcctctagtgatattgaagatgaggttcgtttcgtattgatatgttataagttaaaagatatttggagaaagtatatacgaagatattgttgaaaacATCCAAAATTGATATTGATCAA-T-CATATCATTG-GTCA---AAATGTA--TTTTATTTTA-TACTTA-T-T-TG----GTT-AAAATGATCTGACAATAAACATGTGCTATTTGATT---A-AATA-AACGAGAAAA---------TGTA-TCGTTTAAGTCTAAATAA
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|10 ): CAAACTCCATCAGTATTTAAACTCATTCATCCCACAAAGAAATACATCAAAATATTATATATTCAAAACTCTCATGCTCCCAAGATATTAAGAATCAACACAAAGTTAAATTGATCTATTCTCTCATTTTTTGTTTGTTTCAA
Unaligned ( gi|13 ): GACAATTTTGTACCTTTGGTGACATTGAAAATGAGTTTCATTTTGAGTTGATTTGTGATTTATTTAATAATATTCTCAGAAAGTACAATATAATATTATTAGCAAACTCCATCAGTATTTAAACTCA
Alignments
lowQualScore : 11111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 11 333333333333 2222 1111 111111111111 1111 222222222 222 1 11 22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222 2222
lowQualScore : 5 77 22 44 8 666 4 99 333333333333 4 66 66 4 6666 5 8 777 7 66 0000 4 3 555555555555 5 3 1 888 5 5 0000 000000000 5 77 1 6 0 1 1 1 1 1 111 1 1 5 66 1 55555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555 1 1 3333
lowQualScore : . .. .. .. . ... . .. ............ . .. .. . .... . . ... . .. .... . . ............ . . . ... . . .... ......... . .. . . . . . . . . ... . . . .. . ............................................................................................................................. . . ....
lowQualScore : 7 99 00 33 0 444 0 66 444444444444 4 11 11 4 2222 0 9 888 3 11 0000 4 0 444444444444 7 2 0 888 0 0 4444 000000000 0 99 0 7 7 0 0 0 0 0 555 0 0 5 55 0 00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 0 0 5555
consensus : GCGAAATCCATC-A--GANTTTAAATTCACCCAGTTACTGCAATCAACTA-ATGGTAATGTTATAAATG---ATTTATCGTA-TTATATATTCAATGCTC--T-A-AGAT-TA-G--AA--A-TAATACAATCCAAAATTGATATTGATCCA-T-C-TCTCATTG-GTTA---AAATGTA--T---ATTTTA-TTTGTA-T-T-TG-TT-GTT-AAAATGACCTGACTATAAACATTTGTGATTTTGTT---A-A-TA-GACGAGAAAC---------TGTA-TAGTTTAAGTCTGAATAAA--AGTATGTTCTATTCTGTTCTGTTCTGTTCGTATGTTATATATATTCGAAGGGCANAAATCGACATACCCCTGTGGTTTAAACGTTTGGGTGTTAATACTAGGTGTNACTATTATTTATCTCATTNCTTAATATGTTTCACTTAAANTGTGAAATAAAGAACCTTAAAACTAACNTTTACTTGTTGTTTTTTTTTAAAACACCAGATATCAGTTTGTCTATTTATTNACNTAATTGGCATGGTTTCTTCGATATTGGACTGGTGATANTNATTAATGACTTACCAGTAAGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTATCCGGTCTGCCAAATGAATAAAAGAAACATNAAACAACATCAACNAGAACAATAACAACAAACGCAACAGCAATTATAGCCAACACTACCACCACCACCACCAACAACACAAAACAACAACAC
Reference ( family-361 ) : GCGAAATCCATC-A--GANTTTAAATTCACCCAGTTACTGCAATCAACTA-ATGGTAATGTTATAAATG---ATTTATCGTA-TTATATATTCAATGCTC--T-A-AGAT-TA-G--AA--A-TAATACAATCCAAAATTGATATTGATCCA-T-C-TCTCATTG-GTTA---AAATGTA--T---ATTTTA-TTTGTA-T-T-TG-TT-GTT-AAAATGACCTGACTATAAACATTTGTGATTTTGTT---A-A-TA-GACGAGAAAC---------TGTA-TAGTTTAAGTCTGAATAAA--AGTATGTTCTATTCTGTTCTGTTCTGTTCGTATGTTATATATATTCGAAGGGCANAAATCGACATACCCCTGTGGTTTAAACGTTTGGGTGTTAATACTAGGTGTNACTATTATTTATCTCATTNCTTAATATGTTTCACTTAAANTGTGAAATAAAGAACCTTAAAACTAACNTTTACTTGTTGTTTTTTTTTAAAACACCAGATATCAGTTTGTCTATTTATTNACNTAATTGGCATGGTTTCTTCGATATTGGACTGGTGATANTNATTAATGACTTACCAGTAAGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTATCCGGTCTGCCAAATGAATAAAAGAAACATNAAACAACATCAACNAGAACAATAACAACAAACGCAACAGCAATTATAGCCAACACTACCACCACCACCACCAACAACACAAAACAACAACAC
gi|1 : GCGAAATCCATC-A--GTTTCTAAATTCACCAAGTTACTGTAACCGACTA-ATAATAATATAATAAACG---ATTTATCGTA-TTATATATTCAATGCTC--T-ACAGAT-TA-G--AA--A-TAACACAATCCAAAATTGATAATAATCC------TCTTATTG-GTTA---AAATGTA--T---ATCTTA-TTTGTAAT-T-TG-TT-GTT-AATATGACCAGACTATACACATCTGTGATTTTGTG---A-A-TA-GGTGAGAAAC---------TGTA-TAGTCTAAGTTCGACTAAA--AGTATTTTCTATTATGTTCTGTTCTGTTCATATGTTATATATATTCGAAGGGCAAAAATCGACATACCCCTGTGGTTTAAACGTTTGGGTGTTAATACTAGGTGTAACTATTATTTATTTCATTTCTTAATATGTTTTACTTAAAATGTGAAATAAAGAACCTTAAAACTAACATTTACTTGTTG---TTTTTTAAAACACCAGATATCAGTTTGTCTATTTATTGACTT-ATTGGCATGGTTTCTTCGATATTGGACTGGTGATAATAATTAATGACTTACCAGTAAGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTATTCGGTCTGCCAAATGAATAAAAGAAACATGAAACAACATCAACCAGAACAATAACAACAAACGCAACAGCAATTATAGCCAACACTACCACCACCACCACCAACAACACAAAACAACAACAC
gi|11 : GCAAAATCAATC-ATTG-TTTTATATTAGTTCAGATATTGCAAACAACTG-ATAGCAATGCTATAAATT---ATTTATC-TAGTTATATATTCAATGCTCT-T-C-AGAT-CA-G--GA--ATTAAT-CTATCTTAAATTAATAa
gi|12 : tcattaATTG-TTTA---AAATGTA--T---TTTATA-TTTATA-TCT-TGCTT-GTT-TAAATAATCTGACTTTAAACATTTGTGATTTTGTT---A-A-AACAATGAGAAAC---------T-------TTTACGTCTGAATAAA--AGTATGGTATGTTCTGTACT
gi|14 : tCATC-A--GAATTTAAATTCACCATGTTACTACAATCAACAA-ATGGTAATGTTATGAATG---CTTTATCGTA-TTATATATTCACT--TT--T-A-------A-G--AA--A-TAATACAAt
gi|15 : agtTAAAT-TTTGTAACTTTGTT---ATA-TA-GAAGAGAAAC---------TGTA-TAGTTTAAGTCTGAATAAA--AGT
gi|16 : GCAATCAGTTA-TGGGCAATGTTATAAATG---ATTTACCGT
gi|2 : CTGTAATCGACAA-ATAATAATATAATAAATG---AATTATCGTT-TTATATATTCAATGCTC--T-ACAGAT-TA-G--AA--A-TAACACAGTCCAAGATTGATAATGATCCAAC-C-TCTTATTG-GTTA---AAATGTA--T---ATTTTA-TTTGTAAT-T-TG-TT-GTA-AATATGACCTGACTATAAACATCTGTGATTTTGTG---A-A-TA-GGTGAGAAAC---------TGTA-TAGTCTAAGTTCGACTAAA--AGTATGTTCTATTCTGTTCTGTTCTGTTCATATGTTATATATATTCGAAGGGCATAAATCGACATACCCCTGTGGTTTAAACGTTTGGGTGTTAATACTAGGTGTCACTATTATTTATCTCATTACTTAATATGTTTCATTTAAATTGTGAAATAAAGAACCTTAAAACTAACTTTTACTTGTTGTTTTTTTTTAAAACACCAGATATCAGTTTGTCTATTTATTTACGTAATTGGCATGGTTTCTTCGATATTGGACTGGTGAT-TTTATTAATGACTTACCAGTAAGAtt
gi|2 : tatttggatttcaatacttacactctATCTGGTCTGCCAAATGAATAAAAGAAACATCAAACAACATCAACAAGAACAATAACAACAAACACAACAGCAATTATAGCCAACACTACCACCACCA--A-CAACAACACAAAACAACAACACnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnatctggtctgccaaatgaataaaagaaacatcaaacaacatcaacaagaacaataacaacaaacacaacagcaattatagccaacactaccaccaccaacaacaacacaaaacaacaacac
gi|3 : tatttggatttcaatacttacactctctgtaatcgacaaataataatataataaatgaattatcgttttatatattcaatgctctacagattagaaataacacagtccaagattgataatgatccaacctcttattggttaaaatgtatattttatttgtaatttgttgtaaatatgacctgactataaacatctgtgattttgtgaataggtgagaaactgtatagtctaagttcgactaaaagtatgttctattctgttctgttctgttcatatgttatatatattcgaagggcataaatcgacatacccctgtggtttaaacgtttgggtgttaatactaggtgtcactattatttatctcattacttaatatgtttcatttaaattgtgaaataaagaaccttaaaactaacttttacttgttgtttttttttaaaacaccagatatcagtttgtctatttatttacgtaattggcatggtttcttcgatattggactggtgattttattaatgacttaccagtaagannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnCGAAAATCATT-A--GAATTTAAATTCACCCAGTTACTACAATCAA-TATATGGTAATGTTATGAATG---TTTTATCGTA-TTATATATTCACT--TT--T-A-------A-G--AA--A-TAATACAATCTAAAGATGATATTGATCCA-TCC-TATCATTA-GCTA---AG--GTG--T---ATTTTA-
gi|4 : agccggatagagcgaaacgaaagactatggtgttatttctgtggctctgctgatattgaaaatgagttcagttatgttttgatatataagaagttaaagatatttgaaaaacttatatatggagctattactacGCGCACTCCATCTA--GA-TTTGAATTCATTTATTTACTACAATCAAC-A-ATCAAAAT---ATACATGTAGAGTTA-CA-A-TTACACATTTGATGCTC--CCA-AGATACG-G--AAGAA-CAATAC---CTAAAATTGA-ATTCATCCT-TGC-TCTTATTTTGTTG---AA---TA--T---ATTTCAATTTGTA-T-TCTG-TTTGTTTGAAATGGCCAGACTATATTT-TTTATAATGTTGAT---A-A-TA-GACCTGAAAC---------TGTA-GAGTTTACATCTGGATAAA--ATTATGTT
gi|5 : CGAAAATCATT-A--GAATTTAAATTCACCCAGTTACTACAATCAA-TATATGGTAATGTTATGAATG---TTTTATCGTA-TTATATATTCACT--TT--T-A-------A-G--AA--A-TAATACAATCTAAAGATGATATTGATCCA-TCC-TATCATTA-GCTA---AG--GTG--T---ATTTTA-
gi|6 : tctgttgctctgctaatattgtagatgagttcagttatgttttgatatataagaagttaaagatatttgaaaaaatatatatggagctattactacTGCTATATGTT---ATTTAT---A-TTATAT--TTAACTTTCATT-A-GGAC-TG-GTTAA--A-CA-TACAA--CAAAAATGATATTGACCCA-TTC-TCTCGTTT-GTTA---AAATGAA--T----TTTTA-TTTGT--------------T-AAAATGATCTGATTATAAACATTTGTAATTTTGTT---A-G-TA-CATGAGAAACTATTTTCTTTGTAGTAGTTTAAATGAGAATAAA--CGTATATTCTGTTCTGTCCT----TGTATGTCTATTATat
gi|7 : taatacattTGCAAATAGCTA-ATAGTAATAGTGTAAAGA---ATTTATGATA-TTATACAGTCAATGCTT--C-G-ATGC-TATG--AC--A-TAACACAATCCAAAATTGATATTGACCAA-TGC-TCTTATTGCTTTAATTAAATTTAACT---TTTTTA-TTT----T-T-TT-TT-ATT-GAAATGATCTGATTAGCAACATATGTGAGTTTGTTTTGT-A-TA-------AATC---------TGTT-TAGTATAAATCTGAATAAAGTAGAATCGTCTATTCTGTTct
gi|8 : ATCCACC-A--GTTTTTAAATTCAACCAGTCACTGCAATCAGTTA-TGGGCAATGTTATAAATG---ATTTACCGTT-TT
gi|9 : tagcaataaaagactgtgtcaattctgtgcctctagtgatattgaagatgaggttcgtttcgtattgatatgttataagttaaaagatatttggagaaagtatatacgaagatattgttgaaaacATCCAAAATTGATATTGATCAA-T-CATATCATTG-GTCA---AAATGTA--TTTTATTTTA-TACTTA-T-T-TG----GTT-AAAATGATCTGACAATAAACATGTGCTATTTGATT---A-AATA-AACGAGAAAA---------TGTA-TCGTTTAAGTCTAAATAA
blockSeqs : T TT AA CT T TAG G GC CCAAGATAC T TT GA T AAC A T ATT A AC TTTA A A ATCTTGCTT T A T TTG T A CAAT TATTTTCTT G GT G G T C A T T TTT T G A T T C A A
blockSeqs : . . AA CA T . . GC ATTAGGACT . . . . ATC . C . A . T . G ATTCTGTTT . A T . . . GAA . . . G .
blockSeqs : . . AA TT . . . GC TTCAGATC . . . . TTG . . . A . A . G AATTTGTT . A C . . . GGT . . . G
blockSeqs : . . TT CA . . . TT TACAGATT . . . . ATC . . . A . A . G TTTTTT . A T . . . GAC . . . A
blockSeqs : . . T CT . . . GC CGATGCT . . . . ATT . . . A . A . T ATTTG . A T . . . CAT . . . C
blockSeqs : . . A TT . . . . TA . . . . ATG . . . . . A . . . . . A . . . AAC . . .
blockSeqs : T . . . . TA . . . . AT . . . . . T . . G . . . . . .
blockSeqs : C . . . . TA . . . . . . . . . .
blockSeqs : T . . .
blockSeqs : .
blockSeqCons : TAGATC****** ATC* ATTTTGTTT***
originalCons : GCGAAATCCATC-A--GANTTTAAATTCACCCAGTTACTGCAATCAACTA-ATGGTAATGTTATAAATG---ATTTATCGTA-TTATATATTCAATGCTC--T-A-AGAT-TA-G--AA--A-TAATACAATCCAAAATTGATATTGATCCA-T-C-TCTCATTG-GTTA---AAATGTA--T---ATTTTA-TTTGTA-T-T-TG-TT-GTT-AAAATGACCTGACTATAAACATTTGTGATTTTGTT---A-A-TA-GACGAGAAAC---------TGTA-TAGTTTAAGTCTGAATAAA--AGTATGTTCTATTCTGTTCTGTTCTGTTCGTATGTTATATATATTCGAAGGGCANAAATCGACATACCCCTGTGGTTTAAACGTTTGGGTGTTAATACTAGGTGTNACTATTATTTATCTCATTNCTTAATATGTTTCACTTAAANTGTGAAATAAAGAACCTTAAAACTAACNTTTACTTGTTGTTTTTTTTTAAAACACCAGATATCAGTTTGTCTATTTATTNACNTAATTGGCATGGTTTCTTCGATATTGGACTGGTGATANTNATTAATGACTTACCAGTAAGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTATCCGGTCTGCCAAATGAATAAAAGAAACATNAAACAACATCAACNAGAACAATAACAACAAACGCAACAGCAATTATAGCCAACACTACCACCACCACCACCAACAACACAAAACAACAACAC
finalCons : GCGAAATCCATC-A--GANTTTAAATTCACCCAGTTACTGCAATCAACTA-ATGGTAATGTTATAAATG---ATTTATCGTA-TTATATATTCAATGCTCTAGATC------A-G--AA--A-TAATACAATCCAAAATTGATATTGATCCATC-C-TCTCATTG-GTTA---AAATGTA--T---ATTTTA-TTTGTATTTTGTTT---GTT-AAAATGACCTGACTATAAACATTTGTGATTTTGTT---A-A-TA-GACGAGAAAC---------TGTA-TAGTTTAAGTCTGAATAAA--AGTATGTTCTATTCTGTTCTGTTCTGTTCGTATGTTATATATATTCGAAGGGCANAAATCGACATACCCCTGTGGTTTAAACGTTTGGGTGTTAATACTAGGTGTNACTATTATTTATCTCATTNCTTAATATGTTTCACTTAAANTGTGAAATAAAGAACCTTAAAACTAACNTTTACTTGTTGTTTTTTTTTAAAACACCAGATATCAGTTTGTCTATTTATTNACNTAATTGGCATGGTTTCTTCGATATTGGACTGGTGATANTNATTAATGACTTACCAGTAAGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTATCCGGTCTGCCAAATGAATAAAAGAAACATNAAACAACATCAACNAGAACAATAACAACAAACGCAACAGCAATTATAGCCAACACTACCACCACCACCACCAACAACACAAAACAACAACAC
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|10 ): CAAACTCCATCAGTATTTAAACTCATTCATCCCACAAAGAAATACATCAAAATATTATATATTCAAAACTCTCATGCTCCCAAGATATTAAGAATCAACACAAAGTTAAATTGATCTATTCTCTCATTTTTTGTTTGTTTCAA
Unaligned ( gi|13 ): GACAATTTTGTACCTTTGGTGACATTGAAAATGAGTTTCATTTTGAGTTGATTTGTGATTTATTTAATAATATTCTCAGAAAGTACAATATAATATTATTAGCAAACTCCATCAGTATTTAAACTCA
Alignments
lowQualScore : 11111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 11 444444444444 11 111 1111 222222222 222 1 11 22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222 2222
lowQualScore : 5 77 22 44 8 666 4 999 777 444444444444 4 66 66 4 0 1 8 777 7 4 5 1 5 00 5 0 0 1 333 5 0000 000000000 5 77 1 6 0 1 1 1 1 1 111 1 1 5 66 1 55555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555 1 1 3333
lowQualScore : . .. .. .. . ... . ... ... ............ . .. .. . . . . ... . . . . . .. . . . . ... . .... ......... . .. . . . . . . . . ... . . . .. . ............................................................................................................................. . . ....
lowQualScore : 7 99 00 33 0 444 0 111 000 999999999999 4 11 11 4 4 4 9 888 3 4 3 4 7 77 7 1 4 0 888 0 4444 000000000 0 99 0 7 7 0 0 0 0 0 555 0 0 5 55 0 00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 0 0 5555
consensus : GCGAAATCCATC-A--GANTTTAAATTCACCCAGTTACTGCAATCAACTA-ATGGTAATGTTATAAATG---ATTTATCGTA-TTATATATTCAATGCTC--T--A--G-AT--NA-G--AA--A-TAATACAATCCAAAATTGATATTGATCCATCCTCTCATTG-GTTA---AAATGTATATTTTA-TTTGTAT-TTTGTTT-G-TTAAAATGACCTGACTATAAACATTTGTGATTTTGTT---A-ATA-GACGAGAAAC---------TGTA-TAGTTTAAGTCTGAATAAA--AGTATGTTCTATTCTGTTCTGTTCTGTTCGTATGTTATATATATTCGAAGGGCANAAATCGACATACCCCTGTGGTTTAAACGTTTGGGTGTTAATACTAGGTGTNACTATTATTTATCTCATTNCTTAATATGTTTCACTTAAANTGTGAAATAAAGAACCTTAAAACTAACNTTTACTTGTTGTTTTTTTTTAAAACACCAGATATCAGTTTGTCTATTTATTNACNTAATTGGCATGGTTTCTTCGATATTGGACTGGTGATANTNATTAATGACTTACCAGTAAGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTATCCGGTCTGCCAAATGAATAAAAGAAACATNAAACAACATCAACNAGAACAATAACAACAAACGCAACAGCAATTATAGCCAACACTACCACCACCACCACCAACAACACAAAACAACAACAC
Reference ( family-361 ) : GCGAAATCCATC-A--GANTTTAAATTCACCCAGTTACTGCAATCAACTA-ATGGTAATGTTATAAATG---ATTTATCGTA-TTATATATTCAATGCTC--T--A--G-AT--CA-G--AA--A-TAATACAATCCAAAATTGATATTGATCCATCCTCTCATTG-GTTA---AAATGTATATTTTA-TTTGTAT-TTTGTTT-G-TTAAAATGACCTGACTATAAACATTTGTGATTTTGTT---A-ATA-GACGAGAAAC---------TGTA-TAGTTTAAGTCTGAATAAA--AGTATGTTCTATTCTGTTCTGTTCTGTTCGTATGTTATATATATTCGAAGGGCANAAATCGACATACCCCTGTGGTTTAAACGTTTGGGTGTTAATACTAGGTGTNACTATTATTTATCTCATTNCTTAATATGTTTCACTTAAANTGTGAAATAAAGAACCTTAAAACTAACNTTTACTTGTTGTTTTTTTTTAAAACACCAGATATCAGTTTGTCTATTTATTNACNTAATTGGCATGGTTTCTTCGATATTGGACTGGTGATANTNATTAATGACTTACCAGTAAGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTATCCGGTCTGCCAAATGAATAAAAGAAACATNAAACAACATCAACNAGAACAATAACAACAAACGCAACAGCAATTATAGCCAACACTACCACCACCACCACCAACAACACAAAACAACAACAC
gi|1 : GCGAAATCCATC-A--GTTTCTAAATTCACCAAGTTACTGTAACCGACTA-ATAATAATATAATAAACG---ATTTATCGTA-TTATATATTCAATGCTC--T--ACAG-AT--TA-G--AA--A-TAACACAATCCAAAATTGATAATAATCC----TCTTATTG-GTTA---AAATGTATATCTTA-TTTGTAA-TTTGTT--G-TTAATATGACCAGACTATACACATCTGTGATTTTGTG---A-ATA-GGTGAGAAAC---------TGTA-TAGTCTAAGTTCGACTAAA--AGTATTTTCTATTATGTTCTGTTCTGTTCATATGTTATATATATTCGAAGGGCAAAAATCGACATACCCCTGTGGTTTAAACGTTTGGGTGTTAATACTAGGTGTAACTATTATTTATTTCATTTCTTAATATGTTTTACTTAAAATGTGAAATAAAGAACCTTAAAACTAACATTTACTTGTTG---TTTTTTAAAACACCAGATATCAGTTTGTCTATTTATTGACTT-ATTGGCATGGTTTCTTCGATATTGGACTGGTGATAATAATTAATGACTTACCAGTAAGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTATTCGGTCTGCCAAATGAATAAAAGAAACATGAAACAACATCAACCAGAACAATAACAACAAACGCAACAGCAATTATAGCCAACACTACCACCACCACCACCAACAACACAAAACAACAACAC
gi|11 : GCAAAATCAATC-ATTG-TTTTATATTAGTTCAGATATTGCAAACAACTG-ATAGCAATGCTATAAATT---ATTTATC-TAGTTATATATTCAATGCTC--TTCA--G-AT--CA-G--GA--ATTAAT-CTATCTTAAATTAATAa
gi|12 : tcattaATTG-TTTA---AAATGTATTTTATA-TTTATAT-CTTGCTT-G-TTTAAATAATCTGACTTTAAACATTTGTGATTTTGTT---A-AAACAATGAGAAAC---------T-------TTTACGTCTGAATAAA--AGTATGGTATGTTCTGTACT
gi|14 : tCATC-A--GAATTTAAATTCACCATGTTACTACAATCAACAA-ATGGTAATGTTATGAATG---CTTTATCGTA-TTATATATTCA---CTT--T--------T--AA-G--AA--A-TAATACAAt
gi|15 : agtTAAAT-TTTGTAACTTTGTT---ATATA-GAAGAGAAAC---------TGTA-TAGTTTAAGTCTGAATAAA--AGT
gi|16 : GCAATCAGTTA-TGGGCAATGTTATAAATG---ATTTACCGT
gi|2 : CTGTAATCGACAA-ATAATAATATAATAAATG---AATTATCGTT-TTATATATTCAATGCTC--T--ACAG-AT--TA-G--AA--A-TAACACAGTCCAAGATTGATAATGATCCAACCTCTTATTG-GTTA---AAATGTATATTTTA-TTTGTAA-TTTGTT--G-TAAATATGACCTGACTATAAACATCTGTGATTTTGTG---A-ATA-GGTGAGAAAC---------TGTA-TAGTCTAAGTTCGACTAAA--AGTATGTTCTATTCTGTTCTGTTCTGTTCATATGTTATATATATTCGAAGGGCATAAATCGACATACCCCTGTGGTTTAAACGTTTGGGTGTTAATACTAGGTGTCACTATTATTTATCTCATTACTTAATATGTTTCATTTAAATTGTGAAATAAAGAACCTTAAAACTAACTTTTACTTGTTGTTTTTTTTTAAAACACCAGATATCAGTTTGTCTATTTATTTACGTAATTGGCATGGTTTCTTCGATATTGGACTGGTGAT-TTTATTAATGACTTACCAGTAAGAtt
gi|2 : tatttggatttcaatacttacactctATCTGGTCTGCCAAATGAATAAAAGAAACATCAAACAACATCAACAAGAACAATAACAACAAACACAACAGCAATTATAGCCAACACTACCACCACCA--A-CAACAACACAAAACAACAACACnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnatctggtctgccaaatgaataaaagaaacatcaaacaacatcaacaagaacaataacaacaaacacaacagcaattatagccaacactaccaccaccaacaacaacacaaaacaacaacac
gi|3 : tatttggatttcaatacttacactctctgtaatcgacaaataataatataataaatgaattatcgttttatatattcaatgctctacagattagaaataacacagtccaagattgataatgatccaacctcttattggttaaaatgtatattttatttgtaatttgttgtaaatatgacctgactataaacatctgtgattttgtgaataggtgagaaactgtatagtctaagttcgactaaaagtatgttctattctgttctgttctgttcatatgttatatatattcgaagggcataaatcgacatacccctgtggtttaaacgtttgggtgttaatactaggtgtcactattatttatctcattacttaatatgtttcatttaaattgtgaaataaagaaccttaaaactaacttttacttgttgtttttttttaaaacaccagatatcagtttgtctatttatttacgtaattggcatggtttcttcgatattggactggtgattttattaatgacttaccagtaagannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnCGAAAATCATT-A--GAATTTAAATTCACCCAGTTACTACAATCAA-TATATGGTAATGTTATGAATG---TTTTATCGTA-TTATATATTCA---CTT--T--------T--AA-G--AA--A-TAATACAATCTAAAGATGATATTGATCCATCCTATCATTA-GCTA---AG--GTGTATTTTA-
gi|4 : agccggatagagcgaaacgaaagactatggtgttatttctgtggctctgctgatattgaaaatgagttcagttatgttttgatatataagaagttaaagatatttgaaaaacttatatatggagctattactacGCGCACTCCATCTA--GA-TTTGAATTCATTTATTTACTACAATCAAC-A-ATCAAAAT---ATACATGTAGAGTTA-CA-A-TTACACATTTGATGCTC--CCAA--G-ATA-CG-G--AAGAA-CAATAC---CTAAAATTGA-ATTCATCCTTGCTCTTATTTTGTTG---AA---TATATTTCAATTTGTAT-TCTGTTT-GTTTGAAATGGCCAGACTAT-ATTTTTTATAATGTTGAT---A-ATA-GACCTGAAAC---------TGTA-GAGTTTACATCTGGATAAA--ATTATGTT
gi|5 : CGAAAATCATT-A--GAATTTAAATTCACCCAGTTACTACAATCAA-TATATGGTAATGTTATGAATG---TTTTATCGTA-TTATATATTCA---CTT--T--------T--AA-G--AA--A-TAATACAATCTAAAGATGATATTGATCCATCCTATCATTA-GCTA---AG--GTGTATTTTA-
gi|6 : tctgttgctctgctaatattgtagatgagttcagttatgttttgatatataagaagttaaagatatttgaaaaaatatatatggagctattactacTGCTATATGTT---ATTTAT---A-TTATAT--TTAACTTTCATT--A--GGAC--TG-GTTAA--A-CA-TACAA--CAAAAATGATATTGACCCATTCTCTCGTTT-GTTA---AAATGAAT-------------T-TTTATTT-G-TTAAAATGATCTGATTATAAACATTTGTAATTTTGTT---A-GTA-CATGAGAAACTATTTTCTTTGTAGTAGTTTAAATGAGAATAAA--CGTATATTCTGTTCTGTCCT----TGTATGTCTATTATat
gi|7 : taatacattTGCAAATAGCTA-ATAGTAATAGTGTAAAGA---ATTTATGATA-TTATACAGTCAATGCT---T--C--G-ATGCTATG--AC--A-TAACACAATCCAAAATTGATATTGACCAATGCTCTTATTGCTTTAATTAAATTTA-ACTTT--TTTAT-T-TTTTTTT-A-TTGAAATGATCTGATTAGCAACATATGTGAGTTTGTTTTGT-ATA-------AATC---------TGTT-TAGTATAAATCTGAATAAAGTAGAATCGTCTATTCTGTTct
gi|8 : ATCCACC-A--GTTTTTAAATTCAACCAGTCACTGCAATCAGTTA-TGGGCAATGTTATAAATG---ATTTACCGTT-TT
gi|9 : tagcaataaaagactgtgtcaattctgtgcctctagtgatattgaagatgaggttcgtttcgtattgatatgttataagttaaaagatatttggagaaagtatatacgaagatattgttgaaaacATCCAAAATTGATATTGATCAATCATATCATTG-GTCA---AAATG--TATTTTA-TTT-TATACTTATTTGG-TTAAAATGATCTGACAATAAACATGTGCTATTTGATTA--A-ATA-AACGAGAAAA---------TGTA-TCGTTTAAGTCTAAATAA
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|10 ): CAAACTCCATCAGTATTTAAACTCATTCATCCCACAAAGAAATACATCAAAATATTATATATTCAAAACTCTCATGCTCCCAAGATATTAAGAATCAACACAAAGTTAAATTGATCTATTCTCTCATTTTTTGTTTGTTTCAA
Unaligned ( gi|13 ): GACAATTTTGTACCTTTGGTGACATTGAAAATGAGTTTCATTTTGAGTTGATTTGTGATTTATTTAATAATATTCTCAGAAAGTACAATATAATATTATTAGCAAACTCCATCAGTATTTAAACTCA