lowQualScore                  :        22222                                                    
lowQualScore                  :        22222           33  2 5555 444                           
lowQualScore                  :        .....           ..  . .... ...                           
lowQualScore                  :        88888           44  5 3333 444                           
consensus                     :     TTGGGTTAGAACATGTTTT--TT-C----C---TTTGCAAGCTGAGATTTTCGTTCTCAC
Reference ( gi|11 )           :     TTGAGTCCGAACATGTTTT--TT-C----C---TTTGCAAGCTGAGATTTTCGTTCTCAC
gi|8                          :     TTGGGTTAGAACATGTTTT--TT-C----C---TTTGCAGGCTGAGATTTTT-TTCTCAC
gi|7                          :   atTTG-GTTAGAACATGCTTT--TT-C----C---TTTGCAAGCTGAGA-TTTCGTTTTCACt
gi|2                          :  attTTGGATTTGAGCGTGTTTT--TTTC----C---GTTGCAAGCTGAGATTTTCGTTCTCACt
gi|5                          :   atTTGTGTTAGAACATGTTTT---T-C----C---TTTGCAAGCTGAGATTTTTGTGCTCtt
gi|12                         :   atTTG-GTTAGAACATGTTTT---T-C----C---TTTGCAAGCTGTGATTTTCGTGCTCAtctt
gi|1                          :  attTTGGGTTAGACCATGTCTT--TT-TGTTTT---TTTGCAAGCTGAGGTTTTCATTCTCAC
gi|6                          :   atTTGGATTAGAAAATGCATT--TT-C----C---TTTGCAAGTTGGGGTTTTCATTCTTACt
gi|13                         :   atTTGGATTAGAACAT-TTTT--TC-C----C---TTTGAAAGCTGTGATTTTCATTATCACt
gi|10                         :             GAACATATATT--TT-C----C---TTTGAAAGCTGAGATTTTCGTTCTCACt
gi|4                          :     ttcggttaGAACATGTTTT--TT-C----C---TTTGTAAACTGAAA-TTTCATTTTCACt
gi|15                         : ngattttggtaaGAACATGTTTT--T--C----A---TTTGCAAGCTGAGATTTTCGTt
gi|14                         :     ttatgttaGAACATGTTTT--TC-T----C---TTT----GCTAAGATTTTCGTTCT
gi|9                          :  agatttcggttaAACATGTTTTTTTT-C----C---TTTGCAAACTGAGATTTTCGTTTTCGC
gi|3                          :     ttcggttaaAACATGTTTT--TT-T----CCCTTTTGCAAACTGAGATTTTCGTTCTGAC
gi|16                         :    attcggttaaAACATGTTTT--TT-C----C---TATGCAAGGTGAAATTTTCATTC
gi|17                         :               ggttaaTTT--TT-C----C---CTTGCAAGCTGAGATTTTCTTTCTC

lowQualScore                  :       2                33  2 5555 444                           
lowQualScore                  :       .                ..  . .... ...                           
lowQualScore                  :       5                22  4 0000 111                           
consensus                     :     TTNGGTTAGAACATGTTTT--TT-C----C---TTTGCAAGCTGAGATTTTCGTTCTCAC
Reference ( family-3532 )     :     TTGGGTTAGAACATGTTTT--TT-C----C---TTTGCAAGCTGAGATTTTCGTTCTCAC
gi|1                          :     TTGGGTTAGACCATGTCTT--TT-TGTTTT---TTTGCAAGCTGAGGTTTTCATTCTCAC
gi|10                         :   atTTCGGTTAGAACATATATT--TT-C----C---TTTGAAAGCTGAGATTTTCGTTCTCACt
gi|11                         :     TTGAGTCCGAACATGTTTT--TT-C----C---TTTGCAAGCTGAGATTTTCGTTCTCACt
gi|12                         :     TTTGGTTAGAACATGTTTT---T-C----C---TTTGCAAGCTGTGATTTTCGTGCTCA
gi|13                         :   atTTGGATTAGAACAT-TTTT--TC-C----C---TTTGAAAGCTGTGATTTTCATTATCAC
gi|14                         :     TTCGGTTAGAACATGTTTT--TC-T----C---TTT----GCTAAGATTTTCGTTCTt
gi|15                         :     agatGTTAGAACATGTTTT--T--C----A---TTTGCAAGCTGAGATTTTCGT
gi|16                         :    ttatGGTTAAAACATGTTTT--TT-C----C---TATGCAAGGTGAAATTTTCATTC
gi|17                         :                     TTT--TT-C----C---CTTGCAAGCTGAGATTTTCTTTCTC
gi|2                          :   tgTTGGATTTGAGCGTGTTTT--TTTC----C---GTTGCAAGCTGAGATTTTCGTTCTCACtctttg
gi|3                          :   atTTCGGTTAAAACATGTTTT--TT-T----CCCTTTTGCAAACTGAGATTTTCGTTCTGACtt
gi|4                          :    aTTTGGTAAGAACATGTTTT--TT-C----C---TTTGTAAACTGAAA-TTTCATTTTCAC
gi|5                          : ngatTTGTGTTAGAACATGTTTT---T-C----C---TTTGCAAGCTGAGATTTTTGTGCTCt
gi|6                          :   atTTGGATTAGAAAATGCATT--TT-C----C---TTTGCAAGTTGGGGTTTTCATTCTTACtctt
gi|7                          :   atTTTGGTTAGAACATGCTTT--TT-C----C---TTTGCAAGCTGAGA-TTTCGTTTTCACt
gi|8                          :   atTTGGGTTAGAACATGTTTT--TT-C----C---TTTGCAGGCTGAGATTTTT-TTCTCACt
gi|9                          :   atTTCGGTTAAAACATGTTTTTTTT-C----C---TTTGCAAACTGAGATTTTCGTTTTCGCt

lowQualScore                  :       1                33  2 5555 444                           
lowQualScore                  :       .                ..  . .... ...                           
lowQualScore                  :       0                22  4 0000 111                           
consensus                     :     TTNGGTTAGAACATGTTTT--TT-C----C---TTTGCAAGCTGAGATTTTCGTTCTCAC
Reference ( family-3532 )     :     TTNGGTTAGAACATGTTTT--TT-C----C---TTTGCAAGCTGAGATTTTCGTTCTCAC
gi|1                          :     TTGGGTTAGACCATGTCTT--TT-TGTTTT---TTTGCAAGCTGAGGTTTTCATTCTCAC
gi|10                         :   atTTCGGTTAGAACATATATT--TT-C----C---TTTGAAAGCTGAGATTTTCGTTCTCACt
gi|11                         :     TTGAGTCCGAACATGTTTT--TT-C----C---TTTGCAAGCTGAGATTTTCGTTCTCACt
gi|12                         :     TTTGGTTAGAACATGTTTT---T-C----C---TTTGCAAGCTGTGATTTTCGTGCTCA
gi|13                         :   atTTGGATTAGAACAT-TTTT--TC-C----C---TTTGAAAGCTGTGATTTTCATTATCAC
gi|14                         :     TTCGGTTAGAACATGTTTT--TC-T----C---TTT----GCTAAGATTTTCGTTCTt
gi|15                         : agatTTATGTTAGAACATGTTTT--T--C----A---TTTGCAAGCTGAGATTTTCGT
gi|16                         :        GGTTAAAACATGTTTT--TT-C----C---TATGCAAGGTGAAATTTTCATTC
gi|17                         :                     TTT--TT-C----C---CTTGCAAGCTGAGATTTTCTTTCTC
gi|2                          :   tgTTGGATTTGAGCGTGTTTT--TTTC----C---GTTGCAAGCTGAGATTTTCGTTCTCACtctttg
gi|3                          :   atTTCGGTTAAAACATGTTTT--TT-T----CCCTTTTGCAAACTGAGATTTTCGTTCTGACtt
gi|4                          :    aTTTGGTAAGAACATGTTTT--TT-C----C---TTTGTAAACTGAAA-TTTCATTTTCAC
gi|5                          : ngatTTGTGTTAGAACATGTTTT---T-C----C---TTTGCAAGCTGAGATTTTTGTGCTCt
gi|6                          :   atTTGGATTAGAAAATGCATT--TT-C----C---TTTGCAAGTTGGGGTTTTCATTCTTACtctt
gi|7                          :   atTTTGGTTAGAACATGCTTT--TT-C----C---TTTGCAAGCTGAGA-TTTCGTTTTCACt
gi|8                          :   atTTGGGTTAGAACATGTTTT--TT-C----C---TTTGCAGGCTGAGATTTTT-TTCTCACt
gi|9                          :   atTTCGGTTAAAACATGTTTTTTTT-C----C---TTTGCAAACTGAGATTTTCGTTTTCGCt


blockSeqs                     :       C                TT  T .    CCT
blockSeqs                     :       G                .   . .    .  
blockSeqs                     :       T                .   . .    .  
blockSeqs                     :       G                .   . .    .  
blockSeqs                     :       C                .   . .    .  
blockSeqs                     :       A                .   . .    .  
blockSeqs                     :       G                .   . .    .  
blockSeqs                     :       C                .   . .    .  
blockSeqs                     :       T                .   . .    .  
blockSeqs                     :       G                .   . .    .  
blockSeqs                     :       G                .   . .    .  
blockSeqs                     :       T                .   . .    .  
blockSeqs                     :       G                .   . .    .  
blockSeqs                     :       C                .   . .    .  
blockSeqs                     :                        .   . .    .  
blockSeqs                     :                        .   . .    .  


blockSeqCons                  :                              ****
originalCons                  :     TTNGGTTAGAACATGTTTT--TT-C----C---TTTGCAAGCTGAGATTTTCGTTCTCAC
finalCons                     :     TTNGGTTAGAACATGTTTT--TT-C----C---TTTGCAAGCTGAGATTTTCGTTCTCAC

lowQualScore                  :       1                33  2 5555 444                           
lowQualScore                  :       .                ..  . .... ...                           
lowQualScore                  :       0                22  4 0000 111                           
consensus                     :     TTNGGTTAGAACATGTTTT--TT-C----C---TTTGCAAGCTGAGATTTTCGTTCTCAC
Reference ( family-3532 )     :     TTNGGTTAGAACATGTTTT--TT-C----C---TTTGCAAGCTGAGATTTTCGTTCTCAC
gi|1                          :     TTGGGTTAGACCATGTCTT--TT-TGTTTT---TTTGCAAGCTGAGGTTTTCATTCTCAC
gi|10                         :   atTTCGGTTAGAACATATATT--TT-C----C---TTTGAAAGCTGAGATTTTCGTTCTCACt
gi|11                         :     TTGAGTCCGAACATGTTTT--TT-C----C---TTTGCAAGCTGAGATTTTCGTTCTCACt
gi|12                         :     TTTGGTTAGAACATGTTTT---T-C----C---TTTGCAAGCTGTGATTTTCGTGCTCA
gi|13                         :   atTTGGATTAGAACAT-TTTT--TC-C----C---TTTGAAAGCTGTGATTTTCATTATCAC
gi|14                         :     TTCGGTTAGAACATGTTTT--TC-T----C---TTT----GCTAAGATTTTCGTTCTt
gi|15                         : agatTTATGTTAGAACATGTTTT--T--C----A---TTTGCAAGCTGAGATTTTCGT
gi|16                         :        GGTTAAAACATGTTTT--TT-C----C---TATGCAAGGTGAAATTTTCATTC
gi|17                         :                     TTT--TT-C----C---CTTGCAAGCTGAGATTTTCTTTCTC
gi|2                          :   tgTTGGATTTGAGCGTGTTTT--TTTC----C---GTTGCAAGCTGAGATTTTCGTTCTCACtctttg
gi|3                          :   atTTCGGTTAAAACATGTTTT--TT-T----CCCTTTTGCAAACTGAGATTTTCGTTCTGACtt
gi|4                          :    aTTTGGTAAGAACATGTTTT--TT-C----C---TTTGTAAACTGAAA-TTTCATTTTCAC
gi|5                          : ngatTTGTGTTAGAACATGTTTT---T-C----C---TTTGCAAGCTGAGATTTTTGTGCTCt
gi|6                          :   atTTGGATTAGAAAATGCATT--TT-C----C---TTTGCAAGTTGGGGTTTTCATTCTTACtctt
gi|7                          :   atTTTGGTTAGAACATGCTTT--TT-C----C---TTTGCAAGCTGAGA-TTTCGTTTTCACt
gi|8                          :   atTTGGGTTAGAACATGTTTT--TT-C----C---TTTGCAGGCTGAGATTTTT-TTCTCACt
gi|9                          :   atTTCGGTTAAAACATGTTTTTTTT-C----C---TTTGCAAACTGAGATTTTCGTTTTCGCt