lowQualScore : 11 222222 1 1 111111 44444444444444444444444444444444444444444444444444444444 11111111111 1111111 444444444444444444444 11 1 111 1 111 1111 11 111 111
lowQualScore : 0 11 222222 1 5 77 5 8888 0 77777 3 4 1 222222 77777777777777777777777777777777777777777777777777777777 33 777 55555555555 1111111 111111111111111111111 77 1 4 1 88 77 1 000 0 5 5 111 55 5 9 2 2222 8 3 77 1 77 5 77 888 5 5 1 000 5 6
lowQualScore : . .. ...... . . .. . .... . ..... . . . ...... ........................................................ .. ... ........... ....... ..................... .. . . . .. .. . ... . . . ... .. . . . .... . . .. . .. . .. ... . . . ... . .
lowQualScore : 8 00 333333 4 1 99 7 5555 1 33333 3 4 1 888888 66666666666666666666666666666666666666666666666666666666 00 888 99999999999 6666666 444444444444444444444 00 7 0 1 66 99 4 000 0 0 0 777 55 7 9 7 1111 6 7 99 0 99 7 11 777 7 7 9 000 4 0
consensus : TAATAATAATAATAATAA--AGA--CTTTATTTCAAGAGGTTACACAGTCCAACATGCTG--GATCTTCCCT-GTGTGCCTCCATAT-TATACATATATGCATTTT-AAA-ACAT------AATT-----AGTGGCA----GA-T----------TCAAGC---AA------T------AGAGAACAAACAGAAA---ATCAGCATT------A----CATA-ATG---TACA-------------AACGTTANATGAAT-AAGAATAACATGGTACAAAAATCAAGCACATTAG-AATA--CAAGTC---AT-T-ATATA-CTTC---ATTAGGAGTTAGTNACACTGGTGGATTTTATCCACTTCAGATAA-TTTGATTTAAAATTANCTAAAGA----TGTAGAATT--ACTAACAGAACCAGGAAGTGAGTTCCAAA--TT-TTAGCACCGGAGTAT-GAAA-GCGTTTTTC-GATATATTT---CAAGATTAGGCTTCGGAATATACAGTTGACTTTGGTCGCCTGACCTTAAATTAATGCCATGAAAGTCACTCCCAAAAC
Reference ( gi|2 ) : TAATAATAATAATAATAA--AGA--TTTAATTTCAAGAGGTTACACAGTCCAACATGATG--GATCTTCCCT-GTGTGCCTCCATAT-TATACATATATACATTTT-AAA-ACAT------AATT-----AGTGGCA----GA-T----------TCAAGT---AA------T------AGAGAACAAACAGAAA---ATCAGCATT------A----CATA-ATG---TACA-------------AATGTCAGATGAATTAAGAATAACATGTTACAAAAATCAAGCACATTAG-AATA--CAAGTC---AT-T-ATATA-CTTC---ATTAGGAGTTAGTAGCACTGGTGGATTTTATCCACTTCAGATAA-TTTGATTCAAAATTAACTAAAGA----TGCAGAGTT--ACTAACAGAACCAGGAAGTGAGTTCCAAA--TT-TAAGCACCAGAGTAT-G-AA-GCGTTTTTC-GATATATTT---CAAGATTAGGCTTTGGAATATACAGTTGACTTTGGTCACTTGACCTTAAATTAATGCCATGAAAGTCACTCCCAAAAC
gi|9 : TGATAATAATCATTATAA--AGA--CT--------AGAGGTTACACAGTCCAACATGCTG--GATCTTCCCT-GTGTGCCTCCAAAT-TTTACATTAATACATTTC--AA-ACAT------AATT-----AGTGACA----CA-T----------TCAA
gi|3 : actaattacattattttgattgtatctacatacatgaatgtggaatttagataataattataataaaaataaTAATAATAATGAAAATGA--AGACTTTTAATT-CAAGAGATTACACAGCCCAACATG-TG--TA-CTTCCATAGTATACATATATATATATACAT------ATTTT-AAACACAA------AA-------AGTGACA----GA-T----------TCAAtacgtgtattcacaaaataagttcaa
gi|1 : acgggaaacagacgtacgcacccatgtagatcaggcgattacaggtagttataaacactgaatatatgtatatttactgtatataaatatatgtatgtaaactagaattaaagtaccagttagtaagcatctttttctgtttaAATTATAATAATAATAA--AGA--CTGTTTTTCAAGAGGTCACACAGTTCAACATGCTG--GATCTTCCCT-GTGTACTTCTATAT-TATACATATTT--ATTTT-CAA-AAAT------AATTAATGAAGTAGTA----AA-TTAAAGTATTCTCAAAT---AAGTT---T------AGATAAC---TAGAAACGTATAAGCATTTTGAAAA----CATA-AAGCCATACA-------------AA--------GAGTTAA-AGCAAC-TGCTGTAGAGAACAAACATAAAAGCAGTATTCCATAC---AT-T-ATATA-tacatgtagttacaaatatatgagacacttaagcattttgaaaagttgaagatatatgaaaagataaagcaattgcaatagagaacaaacaggaaatcagcattacatatgttacatgaagaataccatggtacacaaatcaagcatat
gi|15 : aataacagtaacaataacaacaaaaatgataataataataaaAAAAATAATAATAATCAGA--CTTGATTTCAAGAGGTGACATGGTCAAACAAAATGCCGATCTTTCTT-GTATGCATCTATAT-T---TATATTTACATTTT-AAA-AC--------AATTCA---AGTGaaaaataccatggtacaacaatcaaacacattagtatatttgtatttcattaggagttaattacattcgtagattttatccactttagataatttgatttaaaattatctaaagaacggtgtataaaaattaacggaaataggatgtcagtttctaacttttgtacctcagtagaaagcgtttttcgataaatttcaagattggacctcgtcatatacagttgacattggtcgccagacctttaattaatgccacgttaatcactcccaaaac
gi|18 : TAA--AGA--CT--ATTTCAAAAGGTTACACAATCCAACATGCTG--TTTCTTCCCT-GTGTGCCTCa
gi|12 : A--CTTTATTTCAAGAGGTTACACAGTCCAACATGCTG--GATCTTCCCT-GTGTGCCTTCATGT-TATACATATATACATTTT-AAA-ACAT------AATT-----AGTGGCA----GA-T----------TCAAaaaaacta
gi|17 : A--CTTTATTTCAAGAGGTTACACAGTCCAACATGCTG--GATCTTCCCT-GTGTGCCTCGAAAT------ATATATACtacaaacatgtacaatgtacttacaaatagtttacatactagttacttagaca
gi|4 : CATAC-TAGAAACTTAGGCATTTTGAAA-AGATGAAAAGAATT-----AA-AACA-----A-T----------T---GT---AA------T------AGAGAACAAACAGAAA---ATCATCATT------A----CATA-ATG---TAT---------------------GATGAATTAAGAATAACATGGTACAAAAATCAAGTACATTAG-AATA--CAAGTA---AT-T-ATATA-CTTC---ATTAGGAGATAGTGACACTGGTGGGTTTTATCCACTTCAGATAA-TTTGATTTAAAATTAGCTAAAGA----TGCAGAATT--ACTAACAGAACCAGGAAGTGAGTTCCAAA--TT-TTAGCACCGGAGTAT-GAAA-GTGTTTTTC-AATATATTT---CAAGATTAGCCTTTGGAATATACAGTTGGCTTTGGTCACCTGACCTTAAATTAATGCCATGAAAGTCACTCCAAAAAtga
gi|8 : caatacaattatgtatttacaaatacgtttaCATAC-TAGAGACTTAAGCATTTTGAAA-AGAT------GAAA-----AGTTGAA----GAAT----------TAAAGC---AA------TTGTTATAAAGAACAAACAGAAA---ATCAGCATA------A----CATA-ATG---TACA-------------AACATTAGATGAATGAAGAATAACATGGTAC----AT---G-GTATTAG-AATA--CAAGTC---ATAC-ATATA-CTT
gi|1 : tttaaaacataattagtggcagattctatacatgtatttacaaaaaaagtttaACGTATAAGCATTTTGAAA-ACAT------AA-------AGCCATACAAAGAGT----------TAAAGC---AACTGCTGT------AGAGAACAAACATAAA---AGCAGTATT------C----CATA---------CA-----------------TTATATAAA----AAATACCATGGTACAACAATCAAACACATTAG-TATA--T---------T-T-GTAT---TTC---ATTAGGAGTTAATTACATTCGTAGATTTTATCCACTTTAGATAA-TTTGATTTAAAATTATCTAAAGAACGGTGTATAAAA--ATTAACGGAAATAGGATGTCAGTTTCTAA--CT-TTTGTACCTCAGTAG-A-AA-GCGTTTTTC-GATAAATTT---CAAGATTGGACCTCGTCATATACAGTTGACATTGGTCGCCAGACCTTTAATTAATGCCACGTTAATCACTCCCAAAAC
gi|3 : aataacagtaacaataacaacaaaaatgataataataataaaaattataataataataaagactgtttttcaagaggtcacacagttcaacatgctggatcttccctgtgtacttctatattatacatatttattttcaaaaataattaatgaagtagtaaattaaagtattctcaaataagtttagataactagaa-AAA-AGAT------AA----------AGCA-----A-T----------T---GC---AA------T------AGAGAACAAACAGGAA---ATCAGCATT------A----CAT--------------------------ATGTTACATG----AAGAATACCATGGTACACAAATCAAGCATAT
gi|16 : acgggaaacagacgtacgcacccatgtagatcaggcgattacaggtagttataaacactgaatatatgtatatttactgtatataaatatatgtatgtaaactagaattaaagtaccagttagtaagcatctttttctgtttataataataatgaaaatgaagacttttaattcaagagattacacagcccaacatgtgtacttccatagtatacatatatatatatacatattttaaacacaaaaagtgacagattcaatacatgtagttacaaatatatgagacacttaagcattttgaaaagttgaagatatatgAAGTTAAAA------T------AGAGAA---ACAGTAA---ATCAGCATT------A----CGTG--TG---TACATAATACATGTAGTAATGTTATATGAC----GAATACCATAGTGCAAAAA--AAGCACATTAG-TAT
gi|5 : GC---AA------T------AGAGAACATACAGAAA---ATCAGCATT------A----CATA-ATG---TACA-------------AACATCTGATGAATTAAGAATAACATGGTACAAAAATCAAGCACATTAG-AATA--AAAGTC---AT-T-ATAAA-CTTC---ATTAGGAGTTAGTAACACTAGTAGACTTTATCCACTTCCGATAA-TTTGACTTAAAAATAACTAAAGA----TGTAGAATT--ACTAACAGAACCAGGAAGTGAGTTCCAAA--TT-TTAGCACCAGAGTAT-GAAA-GTGTTTTTC-GATATATTT---CAAGATTAGGCTTTGGAATGTACAGTTGACTTTGGTCACCTGACCTTAAATTAATGCCATGAAAGTCACTCACAAA
gi|6 : catattgaaaagattaaaagaattaaaagaattCAGAAA---ATCATCATT------A----CATA-ATG---TACA-------------AACGTCAGATGGATGAAGAGTAACATGGTACCAAAATCAAGCACATTAT-AATA--CAAGTC---ATAC-ATATA-CTTC---ATTAGGAGTTTGTTACACTGGTAGATTTTATCCACTTCAGATAA-TTTGATTTAAAATTAACTAAAGA----TGTAGAATT--ACTAACAGAACCAGGAAGTAAGTTCCAAA--TT-TTAGCACCAGAGTAT-GAAA-GCGTTTTTC-GATATATTT---CAAGATTAGGCTTTGGAATATACAGTTGACATTGGTCACCTGACCTAAAATTAATGCCATGAAAGTCACTCCCAAAAC
gi|7 : AGAAA---ATCAGCGTT------ATTTACATGTATG---TACA-------------TACATTATATGAA----GAAGGCTATGGTACAAACATAACGCACACCAG-------CAAATCTGCAT-TTATGTATCTTCTTAATTAGGAGTTAATAACACTGGTGGACTGAGTCAACTTCAGATAATTTTGTTTAAAAATTAGACACATA----TG--AAGTTTAACTAACAAAAC
gi|11 : gaaacataagcattttgaaaaggtgaaaatatacaaagggtaaacgcacttataatgg-T-ATATA-CTTC---ATAAGGAGTTAATAGCACTGGTGGATTCTATCCAGTTCGGAT-A-T-----------TTAACTTAAGA----TGTATAATT--GC-AACATAACCAGGAAGAGAGTTCCAAA--TTGTTGCCACCAA---AT-T-AA-GCATTCTT--GAAAGATCTAACCGAAATCAGTCTT
gi|10 : tacgaacaatagTTTTATCCACTTCAGATAA-TTTGATTAAAAATTATCTATAGA----TGTAGAATT--GCTAGCAGAACTAGGAAATCAGTTCCAAATGTT-TA--CACAGGAGTATGG-AA-GCGTTTTTCAGATAAATGT---CAAGATTATGCTTCAGAATAAACAGTTGAC--TGGTCaa
gi|14 : ataataatacaacattatacatatatacatgtcgtcagAAA--TT-TTAGCACCAGAGTAT-G-AAAGCATTTTTT-GATATATTT---CAAGATTAGGCTTTGGAATATACAGTTGACTTTGGTCACCTGACCTTAAATTAATGCCATGAAAGTCACTCTCAA
gi|19 : caCTTTGGTTGCCTGATCTTAAATTAATGCCATGTACATCAC
1 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|13 ): ACGGAAAATATCAAAGGTGCACAACCACCTGTGGAACAAACGAAATTCTTATAGTTAATTATTAGTATTAAAACAATATATATATATATTTACATATATATATATAGATATAAATTATGATGGTAAATAAACTATAATTAAGATGTA
Alignments
lowQualScore : 111 111111 1111111 111111 22222222222222 11111111111 3333333333333333333333333333333333333333333 2222222222222222 11111 1 111 1111
lowQualScore : 99 444 888 5 4 3 66 8 4 111111 7777777 5 4 6 999999 66666666666666 33 777 33333333333 88 777 2222222222222222222222222222222222222222222 9999999999999999 777 1 4 9999 0 77 11111 0 5 5 000 1 5 2 0000 66 5 5 3 0 2 5 0 888 1 3 1
lowQualScore : .. ... ... . . . .. . . ...... ....... . . . ...... .............. .. ... ........... .. ... ........................................... ................ ... . . .... . .. ..... . . . ... . . . .... .. . . . . . . . ... . . .
lowQualScore : 22 555 888 0 4 7 66 0 0 555555 3333333 7 4 7 222222 00000000000000 00 888 22222222222 00 888 7777777777777777777777777777777777777777777 6666666666666666 888 1 4 4444 4 99 66666 0 0 0 000 0 0 8 6666 99 0 0 1 1 0 0 5 888 4 6 4
consensus : TAATAATAATAATAATAA--AGACTTT-ATTTCAAGAGGTTACACAGTC---CAACATGCTGGATCTTCCCT-GTGTGCCTCCATAT-TATACATATATGCATTTT-AAA-ACAT------AATT-----AGTGGCAGA-TTCAAG------CAA-------T------AGAGAACAAACAGAAA---ATCAGCATT------A----CATA-ATG---TACA-------------AA-CGTTAGA-----T--------GAA-T-AAGAATA---------------ACATGGTACAAAA---ATCA-AGCAC----ATTAGAATACA--AGT-C---AT-T-ATATA-CTTC---ATTAGGAGTTAGTAACACTGGTGGATTTTATCCACTTCAGATAATTTGATTT-AAAATTANCTAAAGA----TGTAGAATT--ACTAACAGAACCAGGAAGTGAGTTCCAAAT-T-TTAGCACCGGAGTATGAAAGCGTTTTTC-GATATATTT---CAAGATTAGGCTTCGGAATATACAGTTGACTTTGGTCGCCTGACCTTAAATTAATGCCATGAAAGTCACTCCCAAAAC
Reference ( family-3468 ) : TAATAATAATAATAATAA--AGACTTT-ATTTCAAGAGGTTACACAGTC---CAACATGCTGGATCTTCCCT-GTGTGCCTCCATAT-TATACATATATGCATTTT-AAA-ACAT------AATT-----AGTGGCAGA-TTCAAG------CAA-------T------AGAGAACAAACAGAAA---ATCAGCATT------A----CATA-ATG---TACA-------------AA-CGTTANA-----T--------GAA-T-AAGAATA---------------ACATGGTACAAAA---ATCA-AGCAC----ATTAGAATACA--AGT-C---AT-T-ATATA-CTTC---ATTAGGAGTTAGTNACACTGGTGGATTTTATCCACTTCAGATAATTTGATTT-AAAATTANCTAAAGA----TGTAGAATT--ACTAACAGAACCAGGAAGTGAGTTCCAAAT-T-TTAGCACCGGAGTATGAAAGCGTTTTTC-GATATATTT---CAAGATTAGGCTTCGGAATATACAGTTGACTTTGGTCGCCTGACCTTAAATTAATGCCATGAAAGTCACTCCCAAAAC
gi|1 : AATTATAATAATAATAA--AGACTGT-TTTTCAAGAGGTCACACAGTT---CAACATGCTGGATCTTCCCT-GTGTACTTCTATAT-TATACATATTT--ATTTT-CAA-AAAT------AATTAATGAAGTAGTAAA-TTAAAGTATTCTCAAATAAGTTT------AGATAAC---TAGAAACGTATAAGCATTTTGAAAA----CATA-AAGCCATACA-------------AAGAGTTAAAGCAACTGCTGTAGAGAA-C-AAACATAAAAGCAGTATTCCATACATTATATAAAAAATACCATGGTACAACAATCA-AACACATTAGTAT---AT-T--TGTA-TTTC---ATTAGGAGTTAATTACATTCGTAGATTTTATCCACTTTAGATAATTTGATTT-AAAATTATCTAAAGAACGGTGTATAAAA--ATTAACGGAAATAGGATGTCAGTTTCTAAC-T-TTTGTACCTCAGTA-GAAAGCGTTTTTC-GATAAATTT---CAAGATTGGACCTCGTCATATACAGTTGACATTGGTCGCCAGACCTTTAATTAATGCCACGTTAATCACTCCCAAAAC
gi|10 : aataacagtaacaataacaacaaaaatgataataataataaaTTTTATCCACTTCAGATAATTTGATTA-AAAATTATCTATAGA----TGTAGAATT--GCTAGCAGAACTAGGAAATCAGTTCCAAATGT-TTA-CACAGGAGTATGGAAGCGTTTTTCAGATAAATGT---CAAGATTATGCTTCAGAATAAACAGTTGAC--TGGTC
gi|11 : ataataatacaacattatacatatatacatgtcgtcag-T-ATATA-CTTC---ATAAGGAGTTAATAGCACTGGTGGATTCTATCCAGTTCGGAT------ATTT-AA------CTTAAGA----TGTATAATT--GC-AACATAACCAGGAAGAGAGTTCCAAAT-TGTTGCCACCAAATT----AAGCATTCTT--GAAAGATCTAACCGAAATCAGTCTT
gi|12 : tacgaacaatagACTTT-ATTTCAAGAGGTTACACAGTC---CAACATGCTGGATCTTCCCT-GTGTGCCTTCATGT-TATACATATATACATTTT-AAA-ACAT------AATT-----AGTGGCAGA-TTCAAaa
gi|14 : AAAT-T-TTAGCACCAGAGTATGAAAGCATTTTTT-GATATATTT---CAAGATTAGGCTTTGGAATATACAGTTGACTTTGGTCACCTGACCTTAAATTAATGCCATGAAAGTCACTCTCAAtacaaacatgtacaatgtacttacaaatagtttacatactagttacttagaca
gi|15 : caAAAAATAATAATAATCAGACTTG-ATTTCAAGAGGTGACATGGTCAAACAAAATGCC-GATCTTTCTT-GTATGCATCTATAT-T---TATATTTACATTTT-AAA-AC--------AATTCA---AGTG
gi|16 : AA-------T------AGAGAA---ACAGTAA---ATCAGCATT------A----CGT--GTG---TACATAATACATGTAGTAA-TGTTATA-----T--------G-----ACGAATA---------------CCATAGTGCAAAA---A--A-AGCAC----ATTAGTATa
gi|17 : aagttaaACTTT-ATTTCAAGAGGTTACACAGTC---CAACATGCTGGATCTTCCCT-GTGTGCCTCGA-AA-TATATATA
gi|18 : TAA--AGACT---ATTTCAAAAGGTTACACAATC---CAACATGCTGTTTCTTCCCT-GTGTGCCTCctga
gi|19 : CTTTGGTTGCCTGATCTTAAATTAATGCCATGTACATCACaaaaacta
gi|2 : TAATAATAATAATAATAA--AGATTTA-ATTTCAAGAGGTTACACAGTC---CAACATGATGGATCTTCCCT-GTGTGCCTCCATAT-TATACATATATACATTTT-AAA-ACAT------AATT-----AGTGGCAGA-TTCAAG------TAA-------T------AGAGAACAAACAGAAA---ATCAGCATT------A----CATA-ATG---TACA-------------AA-TGTCAGA-----T--------GAATT-AAGAATA---------------ACATGTTACAAAA---ATCA-AGCAC----ATTAGAATACA--AGT-C---AT-T-ATATA-CTTC---ATTAGGAGTTAGTAGCACTGGTGGATTTTATCCACTTCAGATAATTTGATTC-AAAATTAACTAAAGA----TGCAGAGTT--ACTAACAGAACCAGGAAGTGAGTTCCAAAT-T-TAAGCACCAGAGTATG-AAGCGTTTTTC-GATATATTT---CAAGATTAGGCTTTGGAATATACAGTTGACTTTGGTCACTTGACCTTAAATTAATGCCATGAAAGTCACTCCCAAAAC
gi|3 : TAATAATAATGAAAATGA--AGACTTTTAATTCAAGAGATTACACAGCC---CAACATG-TGTA-CTTCCATAGTATACATATATATATATACAT------ATTTT-AAACACAA------AA-------AGTGACAGA-TTCAA
gi|3 : acgggaaacagacgtacgcacccatgtagatcaggcgattacaggtagttataaacactgaatatatgtatatttactgtatataaatatatgtatgtaaactagaattaaagtaccagttagtaagcatctttttctgtttaATATATG-------AAA-AGAT------AA----------AGCA-A-TT---G------CAA-------T------AGAGAACAAACAGGAA---ATCAGCATT------A----CAT--------------------------A-TGTTACA-----T--------G-----AAGAATA---------------CCATGGTACACAA---ATCA-AGCAT----ATtacatgtagttacaaatatatgagacacttaagcattttgaaaagttgaagatatatgaaaagataaagcaattgcaatagagaacaaacaggaaatcagcattacatatgttacatgaagaataccatggtacacaaatcaagcatat
gi|4 : acgggaaacagacgtacgcacccatgtagatcaggcgattacaggtagttataaacactgaatatatgtatatttactgtatataaatatatgtatgtaaactagaattaaagtaccagttagtaagcatctttttctgtttataataataatgaaaatgaagacttttaattcaagagattacacagcccaacatgtgtacttccatagtatacatatatatatatacatattttaaacacaaaaagtgacagattcaatacatgtagttacaaatatatgagacacttaagcattttgaaaagttgaagCATAC-TAGAAACTTAGGCATTTTGAAA-AGATGAAAAGAATT-----AA-AACA-A-TT---G------TAA-------T------AGAGAACAAACAGAAA---ATCATCATT------A----CATA-ATG---TAT----------------------GA-----T--------GAA-TTAAGAATA---------------ACATGGTACAAAA---ATCA-AGTAC----ATTAGAATACA--AGT-A---AT-T-ATATA-CTTC---ATTAGGAGATAGTGACACTGGTGGGTTTTATCCACTTCAGATAATTTGATTT-AAAATTAGCTAAAGA----TGCAGAATT--ACTAACAGAACCAGGAAGTGAGTTCCAAAT-T-TTAGCACCGGAGTATGAAAGTGTTTTTC-AATATATTT---CAAGATTAGCCTTTGGAATATACAGTTGGCTTTGGTCACCTGACCTTAAATTAATGCCATGAAAGTCACTCCAAAAA
gi|5 : caatacaattatgtatttacaaatacgtttaG------CAA-------T------AGAGAACATACAGAAA---ATCAGCATT------A----CATA-ATG---TACA-------------AA-CATCTGA-----T--------GAA-TTAAGAATA---------------ACATGGTACAAAA---ATCA-AGCAC----ATTAGAATAAA--AGT-C---AT-T-ATAAA-CTTC---ATTAGGAGTTAGTAACACTAGTAGACTTTATCCACTTCCGATAATTTGACTT-AAAAATAACTAAAGA----TGTAGAATT--ACTAACAGAACCAGGAAGTGAGTTCCAAAT-T-TTAGCACCAGAGTATGAAAGTGTTTTTC-GATATATTT---CAAGATTAGGCTTTGGAATGTACAGTTGACTTTGGTCACCTGACCTTAAATTAATGCCATGAAAGTCACTCACAAA
gi|6 : catattgaaaagattaaaagaattaaaagaattCAGAAA---ATCATCATT------A----CATA-ATG---TACA-------------AA-CGTCAGA-----T--------GGA-TGAAGAGTA---------------ACATGGTACCAAA---ATCA-AGCAC----ATTATAATACA--AGT-C---ATAC-ATATA-CTTC---ATTAGGAGTTTGTTACACTGGTAGATTTTATCCACTTCAGATAATTTGATTT-AAAATTAACTAAAGA----TGTAGAATT--ACTAACAGAACCAGGAAGTAAGTTCCAAAT-T-TTAGCACCAGAGTATGAAAGCGTTTTTC-GATATATTT---CAAGATTAGGCTTTGGAATATACAGTTGACATTGGTCACCTGACCTAAAATTAATGCCATGAAAGTCACTCCCAAAAC
gi|7 : AGAAA---ATCAGCGTT------ATTTACATGTATG---TACA-------------TA-CATTATA-----T--------GAA-G-AAGGCTA------------------TGGTACAAAC---ATAA-CGCAC----ACCAG----CA--AAT-CTGCAT-TTATGTATCTTCTTAATTAGGAGTTAATAACACTGGTGGACTGAGTCAACTTCAGATAATTTTGTTTAAAAATTAG--ACACA----TATGAAGTTTAACTAACAAAAC
gi|8 : gaaacataagcattttgaaaaggtgaaaatatacaaagggtaaacgcacttataatggTTT-AAA-ACAT------AATT-----AGTGGCAGA-TTC
gi|8 : CATAC-TAGAGACTTAAGCATTTTGAAA-AGAT------GAAA-----AGTTGAAGAATTAAAG------CAA-------TTGTTATAAAGAACAAACAGAAA---ATCAGCATA------A----CATA-ATG---TACA-------------AA-CATTAGA-----T--------GAA-TGAAGAATA---------------ACATGGTAC-------AT----G-GT----ATTAGAATACA--AGT-C---ATAC-ATATA-CTTtatacatgtatttacaaaaaaagtttacatactagagacttaagcattttgaaaagatgaaaagttgaagaattaaagcaattgttataaagaacaaacagaaaatcagcataacataatgtacaaacattagatgaatgaagaataacatggtacatggtattagaatacaagtcatacatatactt
gi|9 : tttaaaacataattagtggcagattctatacatgtatttacaaaaaaagtttaTGATAATAATCATTATAA--AGACT---------AGAGGTTACACAGTC---CAACATGCTGGATCTTCCCT-GTGTGCCTCCAAAT-TTTACATTAATACATTTC--AA-ACAT------AATT-----AGTGACACA-TTCAA
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|13 ): ACGGAAAATATCAAAGGTGCACAACCACCTGTGGAACAAACGAAATTCTTATAGTTAATTATTAGTATTAAAACAATATATATATATATTTACATATATATATATAGATATAAATTATGATGGTAAATAAACTATAATTAAGATGTA
Alignments
lowQualScore : 111 111111 1111111 111111 22222222222222 11111111111 333333333333333333333333333333333333333333 2222222222222222 11111 1 111 1111
lowQualScore : 99 444 888 5 4 3 66 8 4 111111 7777777 5 4 6 999999 66666666666666 33 777 33333333333 88 777 111111111111111111111111111111111111111111 9999999999999999 777 1 4 9999 0 77 11111 0 5 5 000 0 5 2 0000 66 5 5 3 0 2 5 0 888 1 3 1
lowQualScore : .. ... ... . . . .. . . ...... ....... . . . ...... .............. .. ... ........... .. ... .......................................... ................ ... . . .... . .. ..... . . . ... . . . .... .. . . . . . . . ... . . .
lowQualScore : 22 555 888 0 4 7 66 0 0 555555 3333333 7 4 7 222222 00000000000000 00 888 22222222222 00 888 888888888888888888888888888888888888888888 6666666666666666 888 1 4 4444 4 99 66666 0 0 0 000 6 0 8 6666 99 0 0 1 1 0 0 5 888 4 6 4
consensus : TAATAATAATAATAATAA--AGACTTT-ATTTCAAGAGGTTACACAGTC---CAACATGCTGGATCTTCCCT-GTGTGCCTCCATAT-TATACATATATGCATTTT-AAA-ACAT------AATT-----AGTGGCAGA-TTCAAG------CAA-------T------AGAGAACAAACAGAAA---ATCAGCATT------A----CATA-ATG---TACA-------------AA-CGTTAGA-----T--------GAAT-AAGAATA---------------ACATGGTACAAAA---ATCA-AGCAC----ATTAGAATACA--AGT-C---AT-T-ATATA-CTTC---ATTAGGAGTTAGTAACACTGGTGGATTTTATCCACTTCAGATAATTTGATTT-AAAATTANCTAAAGA----TGTAGAATT--ACTAACAGAACCAGGAAGTGAGTTCCAAAT-T-TTAGCACCGGAGTATGAAAGCGTTTTTC-GATATATTT---CAAGATTAGGCTTCGGAATATACAGTTGACTTTGGTCGCCTGACCTTAAATTAATGCCATGAAAGTCACTCCCAAAAC
Reference ( family-3468 ) : TAATAATAATAATAATAA--AGACTTT-ATTTCAAGAGGTTACACAGTC---CAACATGCTGGATCTTCCCT-GTGTGCCTCCATAT-TATACATATATGCATTTT-AAA-ACAT------AATT-----AGTGGCAGA-TTCAAG------CAA-------T------AGAGAACAAACAGAAA---ATCAGCATT------A----CATA-ATG---TACA-------------AA-CGTTAGA-----T--------GAAT-AAGAATA---------------ACATGGTACAAAA---ATCA-AGCAC----ATTAGAATACA--AGT-C---AT-T-ATATA-CTTC---ATTAGGAGTTAGTAACACTGGTGGATTTTATCCACTTCAGATAATTTGATTT-AAAATTANCTAAAGA----TGTAGAATT--ACTAACAGAACCAGGAAGTGAGTTCCAAAT-T-TTAGCACCGGAGTATGAAAGCGTTTTTC-GATATATTT---CAAGATTAGGCTTCGGAATATACAGTTGACTTTGGTCGCCTGACCTTAAATTAATGCCATGAAAGTCACTCCCAAAAC
gi|1 : AATTATAATAATAATAA--AGACTGT-TTTTCAAGAGGTCACACAGTT---CAACATGCTGGATCTTCCCT-GTGTACTTCTATAT-TATACATATTT--ATTTT-CAA-AAAT------AATTAATGAAGTAGTAAA-TTAAAGTATTCTCAAATAAGTTT------AGATAAC---TAGAAACGTATAAGCATTTTGAAAA----CATA-AAGCCATACA-------------AAGAGTTAAAGCAACTGCTGTAGAGAAC-AAACATAAAAGCAGTATTCCATACATTATATAAAAAATACCATGGTACAACAATCA-AACACATTAGTAT---AT-T--TGTA-TTTC---ATTAGGAGTTAATTACATTCGTAGATTTTATCCACTTTAGATAATTTGATTT-AAAATTATCTAAAGAACGGTGTATAAAA--ATTAACGGAAATAGGATGTCAGTTTCTAAC-T-TTTGTACCTCAGTA-GAAAGCGTTTTTC-GATAAATTT---CAAGATTGGACCTCGTCATATACAGTTGACATTGGTCGCCAGACCTTTAATTAATGCCACGTTAATCACTCCCAAAAC
gi|10 : aataacagtaacaataacaacaaaaatgataataataataaaTTTTATCCACTTCAGATAATTTGATTA-AAAATTATCTATAGA----TGTAGAATT--GCTAGCAGAACTAGGAAATCAGTTCCAAATGT-TTA-CACAGGAGTATGGAAGCGTTTTTCAGATAAATGT---CAAGATTATGCTTCAGAATAAACAGTTGAC--TGGTC
gi|11 : ataataatacaacattatacatatatacatgtcgtcag-T-ATATA-CTTC---ATAAGGAGTTAATAGCACTGGTGGATTCTATCCAGTTCGGAT------ATTT-AA------CTTAAGA----TGTATAATT--GC-AACATAACCAGGAAGAGAGTTCCAAAT-TGTTGCCACCAAATT----AAGCATTCTT--GAAAGATCTAACCGAAATCAGTCTT
gi|12 : tacgaacaatagACTTT-ATTTCAAGAGGTTACACAGTC---CAACATGCTGGATCTTCCCT-GTGTGCCTTCATGT-TATACATATATACATTTT-AAA-ACAT------AATT-----AGTGGCAGA-TTCAAaa
gi|14 : AAAT-T-TTAGCACCAGAGTATGAAAGCATTTTTT-GATATATTT---CAAGATTAGGCTTTGGAATATACAGTTGACTTTGGTCACCTGACCTTAAATTAATGCCATGAAAGTCACTCTCAAtacaaacatgtacaatgtacttacaaatagtttacatactagttacttagaca
gi|15 : caAAAAATAATAATAATCAGACTTG-ATTTCAAGAGGTGACATGGTCAAACAAAATGCC-GATCTTTCTT-GTATGCATCTATAT-T---TATATTTACATTTT-AAA-AC--------AATTCA---AGTG
gi|16 : AA-------T------AGAGAA---ACAGTAA---ATCAGCATT------A----CGT--GTG---TACATAATACATGTAGTAA-TGTTATA-----T--------G----ACGAATA---------------CCATAGTGCAAAA---A--A-AGCAC----ATTAGTATa
gi|17 : aagttaaACTTT-ATTTCAAGAGGTTACACAGTC---CAACATGCTGGATCTTCCCT-GTGTGCCTCGA-AA-TATATATA
gi|18 : TAA--AGACT---ATTTCAAAAGGTTACACAATC---CAACATGCTGTTTCTTCCCT-GTGTGCCTCctga
gi|19 : CTTTGGTTGCCTGATCTTAAATTAATGCCATGTACATCACaaaaacta
gi|2 : TAATAATAATAATAATAA--AGATTTA-ATTTCAAGAGGTTACACAGTC---CAACATGATGGATCTTCCCT-GTGTGCCTCCATAT-TATACATATATACATTTT-AAA-ACAT------AATT-----AGTGGCAGA-TTCAAG------TAA-------T------AGAGAACAAACAGAAA---ATCAGCATT------A----CATA-ATG---TACA-------------AA-TGTCAGA-----T--------GAATTAAGAATA---------------ACATGTTACAAAA---ATCA-AGCAC----ATTAGAATACA--AGT-C---AT-T-ATATA-CTTC---ATTAGGAGTTAGTAGCACTGGTGGATTTTATCCACTTCAGATAATTTGATTC-AAAATTAACTAAAGA----TGCAGAGTT--ACTAACAGAACCAGGAAGTGAGTTCCAAAT-T-TAAGCACCAGAGTATG-AAGCGTTTTTC-GATATATTT---CAAGATTAGGCTTTGGAATATACAGTTGACTTTGGTCACTTGACCTTAAATTAATGCCATGAAAGTCACTCCCAAAAC
gi|3 : TAATAATAATGAAAATGA--AGACTTTTAATTCAAGAGATTACACAGCC---CAACATG-TGTA-CTTCCATAGTATACATATATATATATACAT------ATTTT-AAACACAA------AA-------AGTGACAGA-TTCAA
gi|3 : acgggaaacagacgtacgcacccatgtagatcaggcgattacaggtagttataaacactgaatatatgtatatttactgtatataaatatatgtatgtaaactagaattaaagtaccagttagtaagcatctttttctgtttaATATATG-------AAA-AGAT------AA----------AGCA-A-TT---G------CAA-------T------AGAGAACAAACAGGAA---ATCAGCATT------A----CAT--------------------------A-TGTTACA-----T--------G----AAGAATA---------------CCATGGTACACAA---ATCA-AGCAT----ATtacatgtagttacaaatatatgagacacttaagcattttgaaaagttgaagatatatgaaaagataaagcaattgcaatagagaacaaacaggaaatcagcattacatatgttacatgaagaataccatggtacacaaatcaagcatat
gi|4 : acgggaaacagacgtacgcacccatgtagatcaggcgattacaggtagttataaacactgaatatatgtatatttactgtatataaatatatgtatgtaaactagaattaaagtaccagttagtaagcatctttttctgtttataataataatgaaaatgaagacttttaattcaagagattacacagcccaacatgtgtacttccatagtatacatatatatatatacatattttaaacacaaaaagtgacagattcaatacatgtagttacaaatatatgagacacttaagcattttgaaaagttgaagCATAC-TAGAAACTTAGGCATTTTGAAA-AGATGAAAAGAATT-----AA-AACA-A-TT---G------TAA-------T------AGAGAACAAACAGAAA---ATCATCATT------A----CATA-ATG---TAT----------------------GA-----T--------GAATTAAGAATA---------------ACATGGTACAAAA---ATCA-AGTAC----ATTAGAATACA--AGT-A---AT-T-ATATA-CTTC---ATTAGGAGATAGTGACACTGGTGGGTTTTATCCACTTCAGATAATTTGATTT-AAAATTAGCTAAAGA----TGCAGAATT--ACTAACAGAACCAGGAAGTGAGTTCCAAAT-T-TTAGCACCGGAGTATGAAAGTGTTTTTC-AATATATTT---CAAGATTAGCCTTTGGAATATACAGTTGGCTTTGGTCACCTGACCTTAAATTAATGCCATGAAAGTCACTCCAAAAA
gi|5 : caatacaattatgtatttacaaatacgtttaG------CAA-------T------AGAGAACATACAGAAA---ATCAGCATT------A----CATA-ATG---TACA-------------AA-CATCTGA-----T--------GAATTAAGAATA---------------ACATGGTACAAAA---ATCA-AGCAC----ATTAGAATAAA--AGT-C---AT-T-ATAAA-CTTC---ATTAGGAGTTAGTAACACTAGTAGACTTTATCCACTTCCGATAATTTGACTT-AAAAATAACTAAAGA----TGTAGAATT--ACTAACAGAACCAGGAAGTGAGTTCCAAAT-T-TTAGCACCAGAGTATGAAAGTGTTTTTC-GATATATTT---CAAGATTAGGCTTTGGAATGTACAGTTGACTTTGGTCACCTGACCTTAAATTAATGCCATGAAAGTCACTCACAAA
gi|6 : catattgaaaagattaaaagaattaaaagaattCAGAAA---ATCATCATT------A----CATA-ATG---TACA-------------AA-CGTCAGA-----T--------GGATGAAGAGTA---------------ACATGGTACCAAA---ATCA-AGCAC----ATTATAATACA--AGT-C---ATAC-ATATA-CTTC---ATTAGGAGTTTGTTACACTGGTAGATTTTATCCACTTCAGATAATTTGATTT-AAAATTAACTAAAGA----TGTAGAATT--ACTAACAGAACCAGGAAGTAAGTTCCAAAT-T-TTAGCACCAGAGTATGAAAGCGTTTTTC-GATATATTT---CAAGATTAGGCTTTGGAATATACAGTTGACATTGGTCACCTGACCTAAAATTAATGCCATGAAAGTCACTCCCAAAAC
gi|7 : AGAAA---ATCAGCGTT------ATTTACATGTATG---TACA-------------TA-CATTATA-----T--------GAAG-AAGGCTA------------------TGGTACAAAC---ATAA-CGCAC----ACCAG----CA--AAT-CTGCAT-TTATGTATCTTCTTAATTAGGAGTTAATAACACTGGTGGACTGAGTCAACTTCAGATAATTTTGTTTAAAAATTAG--ACACA----TATGAAGTTTAACTAACAAAAC
gi|8 : gaaacataagcattttgaaaaggtgaaaatatacaaagggtaaacgcacttataatggTTT-AAA-ACAT------AATT-----AGTGGCAGA-TTC
gi|8 : CATAC-TAGAGACTTAAGCATTTTGAAA-AGAT------GAAA-----AGTTGAAGAATTAAAG------CAA-------TTGTTATAAAGAACAAACAGAAA---ATCAGCATA------A----CATA-ATG---TACA-------------AA-CATTAGA-----T--------GAATGAAGAATA---------------ACATGGTAC-------AT----G-GT----ATTAGAATACA--AGT-C---ATAC-ATATA-CTTtatacatgtatttacaaaaaaagtttacatactagagacttaagcattttgaaaagatgaaaagttgaagaattaaagcaattgttataaagaacaaacagaaaatcagcataacataatgtacaaacattagatgaatgaagaataacatggtacatggtattagaatacaagtcatacatatactt
gi|9 : tttaaaacataattagtggcagattctatacatgtatttacaaaaaaagtttaTGATAATAATCATTATAA--AGACT---------AGAGGTTACACAGTC---CAACATGCTGGATCTTCCCT-GTGTGCCTCCAAAT-TTTACATTAATACATTTC--AA-ACAT------AATT-----AGTGACACA-TTCAA
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|13 ): ACGGAAAATATCAAAGGTGCACAACCACCTGTGGAACAAACGAAATTCTTATAGTTAATTATTAGTATTAAAACAATATATATATATATTTACATATATATATATAGATATAAATTATGATGGTAAATAAACTATAATTAAGATGTA
Alignments
lowQualScore : 111 111111 1111111 111111 22222222222222 11111111111 333333333333333333333333333333333333333333 2222222222222222 11111 1 111 1111
lowQualScore : 99 444 888 5 4 3 66 8 4 111111 7777777 5 4 6 999999 66666666666666 33 777 33333333333 88 777 111111111111111111111111111111111111111111 9999999999999999 777 1 4 9999 0 77 11111 0 5 5 000 0 5 2 0000 66 5 5 3 0 2 5 0 888 1 3 1
lowQualScore : .. ... ... . . . .. . . ...... ....... . . . ...... .............. .. ... ........... .. ... .......................................... ................ ... . . .... . .. ..... . . . ... . . . .... .. . . . . . . . ... . . .
lowQualScore : 22 555 888 0 4 7 66 0 0 555555 3333333 7 4 7 222222 00000000000000 00 888 22222222222 00 888 888888888888888888888888888888888888888888 6666666666666666 888 1 4 4444 4 99 66666 0 0 0 000 6 0 8 6666 99 0 0 1 1 0 0 5 888 4 6 4
consensus : TAATAATAATAATAATAA--AGACTTT-ATTTCAAGAGGTTACACAGTC---CAACATGCTGGATCTTCCCT-GTGTGCCTCCATAT-TATACATATATGCATTTT-AAA-ACAT------AATT-----AGTGGCAGA-TTCAAG------CAA-------T------AGAGAACAAACAGAAA---ATCAGCATT------A----CATA-ATG---TACA-------------AA-CGTTAGA-----T--------GAAT-AAGAATA---------------ACATGGTACAAAA---ATCA-AGCAC----ATTAGAATACA--AGT-C---AT-T-ATATA-CTTC---ATTAGGAGTTAGTAACACTGGTGGATTTTATCCACTTCAGATAATTTGATTT-AAAATTANCTAAAGA----TGTAGAATT--ACTAACAGAACCAGGAAGTGAGTTCCAAAT-T-TTAGCACCGGAGTATGAAAGCGTTTTTC-GATATATTT---CAAGATTAGGCTTCGGAATATACAGTTGACTTTGGTCGCCTGACCTTAAATTAATGCCATGAAAGTCACTCCCAAAAC
Reference ( family-3468 ) : TAATAATAATAATAATAA--AGACTTT-ATTTCAAGAGGTTACACAGTC---CAACATGCTGGATCTTCCCT-GTGTGCCTCCATAT-TATACATATATGCATTTT-AAA-ACAT------AATT-----AGTGGCAGA-TTCAAG------CAA-------T------AGAGAACAAACAGAAA---ATCAGCATT------A----CATA-ATG---TACA-------------AA-CGTTAGA-----T--------GAAT-AAGAATA---------------ACATGGTACAAAA---ATCA-AGCAC----ATTAGAATACA--AGT-C---AT-T-ATATA-CTTC---ATTAGGAGTTAGTAACACTGGTGGATTTTATCCACTTCAGATAATTTGATTT-AAAATTANCTAAAGA----TGTAGAATT--ACTAACAGAACCAGGAAGTGAGTTCCAAAT-T-TTAGCACCGGAGTATGAAAGCGTTTTTC-GATATATTT---CAAGATTAGGCTTCGGAATATACAGTTGACTTTGGTCGCCTGACCTTAAATTAATGCCATGAAAGTCACTCCCAAAAC
gi|1 : AATTATAATAATAATAA--AGACTGT-TTTTCAAGAGGTCACACAGTT---CAACATGCTGGATCTTCCCT-GTGTACTTCTATAT-TATACATATTT--ATTTT-CAA-AAAT------AATTAATGAAGTAGTAAA-TTAAAGTATTCTCAAATAAGTTT------AGATAAC---TAGAAACGTATAAGCATTTTGAAAA----CATA-AAGCCATACA-------------AAGAGTTAAAGCAACTGCTGTAGAGAAC-AAACATAAAAGCAGTATTCCATACATTATATAAAAAATACCATGGTACAACAATCA-AACACATTAGTAT---AT-T--TGTA-TTTC---ATTAGGAGTTAATTACATTCGTAGATTTTATCCACTTTAGATAATTTGATTT-AAAATTATCTAAAGAACGGTGTATAAAA--ATTAACGGAAATAGGATGTCAGTTTCTAAC-T-TTTGTACCTCAGTA-GAAAGCGTTTTTC-GATAAATTT---CAAGATTGGACCTCGTCATATACAGTTGACATTGGTCGCCAGACCTTTAATTAATGCCACGTTAATCACTCCCAAAAC
gi|10 : aataacagtaacaataacaacaaaaatgataataataataaaTTTTATCCACTTCAGATAATTTGATTA-AAAATTATCTATAGA----TGTAGAATT--GCTAGCAGAACTAGGAAATCAGTTCCAAATGT-TTA-CACAGGAGTATGGAAGCGTTTTTCAGATAAATGT---CAAGATTATGCTTCAGAATAAACAGTTGAC--TGGTC
gi|11 : ataataatacaacattatacatatatacatgtcgtcag-T-ATATA-CTTC---ATAAGGAGTTAATAGCACTGGTGGATTCTATCCAGTTCGGAT------ATTT-AA------CTTAAGA----TGTATAATT--GC-AACATAACCAGGAAGAGAGTTCCAAAT-TGTTGCCACCAAATT----AAGCATTCTT--GAAAGATCTAACCGAAATCAGTCTT
gi|12 : tacgaacaatagACTTT-ATTTCAAGAGGTTACACAGTC---CAACATGCTGGATCTTCCCT-GTGTGCCTTCATGT-TATACATATATACATTTT-AAA-ACAT------AATT-----AGTGGCAGA-TTCAAaa
gi|14 : AAAT-T-TTAGCACCAGAGTATGAAAGCATTTTTT-GATATATTT---CAAGATTAGGCTTTGGAATATACAGTTGACTTTGGTCACCTGACCTTAAATTAATGCCATGAAAGTCACTCTCAAtacaaacatgtacaatgtacttacaaatagtttacatactagttacttagaca
gi|15 : caAAAAATAATAATAATCAGACTTG-ATTTCAAGAGGTGACATGGTCAAACAAAATGCC-GATCTTTCTT-GTATGCATCTATAT-T---TATATTTACATTTT-AAA-AC--------AATTCA---AGTG
gi|16 : AA-------T------AGAGAA---ACAGTAA---ATCAGCATT------A----CGT--GTG---TACATAATACATGTAGTAA-TGTTATA-----T--------G----ACGAATA---------------CCATAGTGCAAAA---A--A-AGCAC----ATTAGTATa
gi|17 : aagttaaACTTT-ATTTCAAGAGGTTACACAGTC---CAACATGCTGGATCTTCCCT-GTGTGCCTCGA-AA-TATATATA
gi|18 : TAA--AGACT---ATTTCAAAAGGTTACACAATC---CAACATGCTGTTTCTTCCCT-GTGTGCCTCctga
gi|19 : CTTTGGTTGCCTGATCTTAAATTAATGCCATGTACATCACaaaaacta
gi|2 : TAATAATAATAATAATAA--AGATTTA-ATTTCAAGAGGTTACACAGTC---CAACATGATGGATCTTCCCT-GTGTGCCTCCATAT-TATACATATATACATTTT-AAA-ACAT------AATT-----AGTGGCAGA-TTCAAG------TAA-------T------AGAGAACAAACAGAAA---ATCAGCATT------A----CATA-ATG---TACA-------------AA-TGTCAGA-----T--------GAATTAAGAATA---------------ACATGTTACAAAA---ATCA-AGCAC----ATTAGAATACA--AGT-C---AT-T-ATATA-CTTC---ATTAGGAGTTAGTAGCACTGGTGGATTTTATCCACTTCAGATAATTTGATTC-AAAATTAACTAAAGA----TGCAGAGTT--ACTAACAGAACCAGGAAGTGAGTTCCAAAT-T-TAAGCACCAGAGTATG-AAGCGTTTTTC-GATATATTT---CAAGATTAGGCTTTGGAATATACAGTTGACTTTGGTCACTTGACCTTAAATTAATGCCATGAAAGTCACTCCCAAAAC
gi|3 : TAATAATAATGAAAATGA--AGACTTTTAATTCAAGAGATTACACAGCC---CAACATG-TGTA-CTTCCATAGTATACATATATATATATACAT------ATTTT-AAACACAA------AA-------AGTGACAGA-TTCAA
gi|3 : acgggaaacagacgtacgcacccatgtagatcaggcgattacaggtagttataaacactgaatatatgtatatttactgtatataaatatatgtatgtaaactagaattaaagtaccagttagtaagcatctttttctgtttaATATATG-------AAA-AGAT------AA----------AGCA-A-TT---G------CAA-------T------AGAGAACAAACAGGAA---ATCAGCATT------A----CAT--------------------------A-TGTTACA-----T--------G----AAGAATA---------------CCATGGTACACAA---ATCA-AGCAT----ATtacatgtagttacaaatatatgagacacttaagcattttgaaaagttgaagatatatgaaaagataaagcaattgcaatagagaacaaacaggaaatcagcattacatatgttacatgaagaataccatggtacacaaatcaagcatat
gi|4 : acgggaaacagacgtacgcacccatgtagatcaggcgattacaggtagttataaacactgaatatatgtatatttactgtatataaatatatgtatgtaaactagaattaaagtaccagttagtaagcatctttttctgtttataataataatgaaaatgaagacttttaattcaagagattacacagcccaacatgtgtacttccatagtatacatatatatatatacatattttaaacacaaaaagtgacagattcaatacatgtagttacaaatatatgagacacttaagcattttgaaaagttgaagCATAC-TAGAAACTTAGGCATTTTGAAA-AGATGAAAAGAATT-----AA-AACA-A-TT---G------TAA-------T------AGAGAACAAACAGAAA---ATCATCATT------A----CATA-ATG---TAT----------------------GA-----T--------GAATTAAGAATA---------------ACATGGTACAAAA---ATCA-AGTAC----ATTAGAATACA--AGT-A---AT-T-ATATA-CTTC---ATTAGGAGATAGTGACACTGGTGGGTTTTATCCACTTCAGATAATTTGATTT-AAAATTAGCTAAAGA----TGCAGAATT--ACTAACAGAACCAGGAAGTGAGTTCCAAAT-T-TTAGCACCGGAGTATGAAAGTGTTTTTC-AATATATTT---CAAGATTAGCCTTTGGAATATACAGTTGGCTTTGGTCACCTGACCTTAAATTAATGCCATGAAAGTCACTCCAAAAA
gi|5 : caatacaattatgtatttacaaatacgtttaG------CAA-------T------AGAGAACATACAGAAA---ATCAGCATT------A----CATA-ATG---TACA-------------AA-CATCTGA-----T--------GAATTAAGAATA---------------ACATGGTACAAAA---ATCA-AGCAC----ATTAGAATAAA--AGT-C---AT-T-ATAAA-CTTC---ATTAGGAGTTAGTAACACTAGTAGACTTTATCCACTTCCGATAATTTGACTT-AAAAATAACTAAAGA----TGTAGAATT--ACTAACAGAACCAGGAAGTGAGTTCCAAAT-T-TTAGCACCAGAGTATGAAAGTGTTTTTC-GATATATTT---CAAGATTAGGCTTTGGAATGTACAGTTGACTTTGGTCACCTGACCTTAAATTAATGCCATGAAAGTCACTCACAAA
gi|6 : catattgaaaagattaaaagaattaaaagaattCAGAAA---ATCATCATT------A----CATA-ATG---TACA-------------AA-CGTCAGA-----T--------GGATGAAGAGTA---------------ACATGGTACCAAA---ATCA-AGCAC----ATTATAATACA--AGT-C---ATAC-ATATA-CTTC---ATTAGGAGTTTGTTACACTGGTAGATTTTATCCACTTCAGATAATTTGATTT-AAAATTAACTAAAGA----TGTAGAATT--ACTAACAGAACCAGGAAGTAAGTTCCAAAT-T-TTAGCACCAGAGTATGAAAGCGTTTTTC-GATATATTT---CAAGATTAGGCTTTGGAATATACAGTTGACATTGGTCACCTGACCTAAAATTAATGCCATGAAAGTCACTCCCAAAAC
gi|7 : AGAAA---ATCAGCGTT------ATTTACATGTATG---TACA-------------TA-CATTATA-----T--------GAAG-AAGGCTA------------------TGGTACAAAC---ATAA-CGCAC----ACCAG----CA--AAT-CTGCAT-TTATGTATCTTCTTAATTAGGAGTTAATAACACTGGTGGACTGAGTCAACTTCAGATAATTTTGTTTAAAAATTAG--ACACA----TATGAAGTTTAACTAACAAAAC
gi|8 : gaaacataagcattttgaaaaggtgaaaatatacaaagggtaaacgcacttataatggTTT-AAA-ACAT------AATT-----AGTGGCAGA-TTC
gi|8 : CATAC-TAGAGACTTAAGCATTTTGAAA-AGAT------GAAA-----AGTTGAAGAATTAAAG------CAA-------TTGTTATAAAGAACAAACAGAAA---ATCAGCATA------A----CATA-ATG---TACA-------------AA-CATTAGA-----T--------GAATGAAGAATA---------------ACATGGTAC-------AT----G-GT----ATTAGAATACA--AGT-C---ATAC-ATATA-CTTtatacatgtatttacaaaaaaagtttacatactagagacttaagcattttgaaaagatgaaaagttgaagaattaaagcaattgttataaagaacaaacagaaaatcagcataacataatgtacaaacattagatgaatgaagaataacatggtacatggtattagaatacaagtcatacatatactt
gi|9 : tttaaaacataattagtggcagattctatacatgtatttacaaaaaaagtttaTGATAATAATCATTATAA--AGACT---------AGAGGTTACACAGTC---CAACATGCTGGATCTTCCCT-GTGTGCCTCCAAAT-TTTACATTAATACATTTC--AA-ACAT------AATT-----AGTGACACA-TTCAA
blockSeqs : TC TTT AAA A A A AC G C GAAAAG TTCA G A C . TTGTTAT AA . ATTTA GT . TAATACATGTAGTAATGTTATATG C . C . . . CTGC A T T TTA A T . TA G G G G A AAC C T A
blockSeqs : . TT . . . A AC G . . TT G . C . T AA . A A . AATGTCAGATGAATT A . C . . . C A . . . . A . . . . A A . . T T G
blockSeqs : . TG . . . A AC . . . TT G . C . T AA . A A . AACATCTGATGAATT C . C . . . A . . . . . G . . . . A A . . T T A
blockSeqs : . TT . . . A GC . . . TT G . C . T AT . A A . AACGTCAGATGGATG A . C . . . C . . . . . A . . . . A A . . T T A
blockSeqs : . TA . . . A GC . . . TT G . A . T AA . A A . AACATTAGATGAATG A . C . . . C . . . . . A . . . . G A . . T T A
blockSeqs : . . . . T AC . . . AA C . C T . . A A . TACATTATATGAAG A . A . . . C . . . . . G . . . . A . . . T A A
blockSeqs : . . . . T G . . . TT . . . . A . . ATGTTACATG A . . . . . . . . . . . . . A . . . .
blockSeqs : . T . . . . . . . . . A . . GATGAATT . . . . .
blockSeqs : . . . . .
blockSeqCons : AC TT***** ****** T************* AA *** A********** *** AACGTCAGATGAATG*************************** A*************** *** **** ** C**** ****
originalCons : TAATAATAATAATAATAA--AGACTTT-ATTTCAAGAGGTTACACAGTC---CAACATGCTGGATCTTCCCT-GTGTGCCTCCATAT-TATACATATATGCATTTT-AAA-ACAT------AATT-----AGTGGCAGA-TTCAAG------CAA-------T------AGAGAACAAACAGAAA---ATCAGCATT------A----CATA-ATG---TACA-------------AA-CGTTAGA-----T--------GAAT-AAGAATA---------------ACATGGTACAAAA---ATCA-AGCAC----ATTAGAATACA--AGT-C---AT-T-ATATA-CTTC---ATTAGGAGTTAGTAACACTGGTGGATTTTATCCACTTCAGATAATTTGATTT-AAAATTANCTAAAGA----TGTAGAATT--ACTAACAGAACCAGGAAGTGAGTTCCAAAT-T-TTAGCACCGGAGTATGAAAGCGTTTTTC-GATATATTT---CAAGATTAGGCTTCGGAATATACAGTTGACTTTGGTCGCCTGACCTTAAATTAATGCCATGAAAGTCACTCCCAAAAC
finalCons : TAATAATAATAATAATAA--AGACTTT-ATTTCAAGAGGTTACACAGTC---CAACATGCTGGATCTTCCCT-GTGTGCCTCCATAT-TATACATATATACATTTT-AAA-ACAT------AATT-----AGTGGCAGA-TTCAAG------CAAT-------------AGAGAACAAACAGAAA---ATCAGCATTA----------CATA-ATG---TACAAACGTCAGATGAATG---------------------------AAGAATAA---------------CATGGTACAAAA---ATCA-AGCAC----ATTAGAATACA--AGTC----AT-T-ATATA-CTTC---ATTAGGAGTTAGTAACACTGGTGGATTTTATCCACTTCAGATAATTTGATTT-AAAATTANCTAAAGA----TGTAGAATT--ACTAACAGAACCAGGAAGTGAGTTCCAAAT-T-TTAGCACCGGAGTATGAAAGCGTTTTTC-GATATATTT---CAAGATTAGGCTTCGGAATATACAGTTGACTTTGGTCGCCTGACCTTAAATTAATGCCATGAAAGTCACTCCCAAAAC
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|13 ): ACGGAAAATATCAAAGGTGCACAACCACCTGTGGAACAAACGAAATTCTTATAGTTAATTATTAGTATTAAAACAATATATATATATATTTACATATATATATATAGATATAAATTATGATGGTAAATAAACTATAATTAAGATGTA
Alignments
lowQualScore : 111 1 111111 2222222 11111 111111 33333333333333 11111111111 111 222222222222222 111 1 111 1111
lowQualScore : 99 444 888 5 4444 3 33 2 4 111111 4444444 55555 8 9 666666 66666666666666 00 777 33333333333 44 111 333333333333333 8888 0 4 1 3 000 0 5 5 000 0 5 2 0000 66 5 5 3 0 2 5 0 888 1 3 1
lowQualScore : .. ... ... . .... . .. . . ...... ....... ..... . . ...... .............. .. ... ........... .. ... ............... .... . . . . ... . . . ... . . . .... .. . . . . . . . ... . . .
lowQualScore : 22 555 888 0 6666 7 88 0 0 555555 6666666 11111 9 4 444444 00000000000000 44 000 44444444444 88 000 444444444444444 6666 1 4 1 6 000 0 0 0 000 6 0 8 6666 99 0 0 1 1 0 0 5 888 4 6 4
consensus : TAATAATAATAATAATAA--AGACTTT-ATTTCAAGAGGTTACACAGTC---CAACATGCTGGATCTTCCCT-GTGTGCCTCCATAT-TATACATATATACATTTT-AAA-ACAT------AATT-----AGTGGCA----GA-TTCAAG------CAA-------T------AGAGAACAAACAGAAA---ATCAGCATT------A----CATA-ATG---TACA--A-ACGT-CAG--ATG--A-ATGAAGAATAACATGGTACAAAAATCAAGCACATTAGAATACAAGTC---AT-T-ATATA-CTTC---ATTAGGAGTTAGTAACACTGGTGGATTTTATCCACTTCAGATAATTTGATTT-AAAATTANCTAAAGA----TGTAGAATT--ACTAACAGAACCAGGAAGTGAGTTCCAAAT-T-TTAGCACCGGAGTATGAAAGCGTTTTTC-GATATATTT---CAAGATTAGGCTTCGGAATATACAGTTGACTTTGGTCGCCTGACCTTAAATTAATGCCATGAAAGTCACTCCCAAAAC
Reference ( family-3468 ) : TAATAATAATAATAATAA--AGACTTT-ATTTCAAGAGGTTACACAGTC---CAACATGCTGGATCTTCCCT-GTGTGCCTCCATAT-TATACATATATACATTTT-AAA-ACAT------AATT-----AGTGGCA----GA-TTCAAG------CAA-------T------AGAGAACAAACAGAAA---ATCAGCATT------A----CATA-ATG---TACA--A-ACGT-CAG--ATG--A-ATGAAGAATAACATGGTACAAAAATCAAGCACATTAGAATACAAGTC---AT-T-ATATA-CTTC---ATTAGGAGTTAGTAACACTGGTGGATTTTATCCACTTCAGATAATTTGATTT-AAAATTANCTAAAGA----TGTAGAATT--ACTAACAGAACCAGGAAGTGAGTTCCAAAT-T-TTAGCACCGGAGTATGAAAGCGTTTTTC-GATATATTT---CAAGATTAGGCTTCGGAATATACAGTTGACTTTGGTCGCCTGACCTTAAATTAATGCCATGAAAGTCACTCCCAAAAC
gi|1 : AATTATAATAATAATAA--AGACTGT-TTTTCAAGAGGTCACACAGTT---CAACATGCTGGATCTTCCCT-GTGTACTTCTATAT-TATACATATTT--ATTTT-CAA-AAAT------AATTAATGAAGTAGTA----AA-TTAAAGTATTCTCAAATAAGTTT------AGATAAC---TAGAAACGTATAAGCATTTTGAAAA----CATA-AAGCCATACA--A-A
gi|1 : aataacagtaacaataacaacaaaaatgataataataataaaACGTATAAGCATTTTGAAA-ACAT------AA-------AGCCATACAAAGAGTTAAAG------CAACTGCTG-T------AGAGAACAAACATAAA---AGCAGTATT------C----CATA----------------CAT-TA----T-----ATAAAAAATACCATGGTACAACAATCAAACACATTAGTATAT---------T-T-GTAT---TTC---ATTAGGAGTTAATTACATTCGTAGATTTTATCCACTTTAGATAATTTGATTT-AAAATTATCTAAAGAACGGTGTATAAAA--ATTAACGGAAATAGGATGTCAGTTTCTAAC-T-TTTGTACCTCAGTA-GAAAGCGTTTTTC-GATAAATTT---CAAGATTGGACCTCGTCATATACAGTTGACATTGGTCGCCAGACCTTTAATTAATGCCACGTTAATCACTCCCAAAACgagttaaagcaactgctgtagagaacaaacataaaagcagtattccatacattatataaaaaataccatggtacaacaatcaaacacattagtatatttgtatttcattaggagttaattacattcgtagattttatccactttagataatttgatttaaaattatctaaagaacggtgtataaaaattaacggaaataggatgtcagtttctaacttttgtacctcagtagaaagcgtttttcgataaatttcaagattggacctcgtcatatacagttgacattggtcgccagacctttaattaatgccacgttaatcactcccaaaac
gi|10 : aataacagtaacaataacaacaaaaatgataataataataaaaattataataataataaagactgtttttcaagaggtcacacagttcaacatgctggatcttccctgtgtacttctatattatacatatttattttcaaaaataattaatgaagtagtaaattaaagtattctcaaataagtttagataactagaaTTTTATCCACTTCAGATAATTTGATTA-AAAATTATCTATAGA----TGTAGAATT--GCTAGCAGAACTAGGAAATCAGTTCCAAATGT-TTA-CACAGGAGTATGGAAGCGTTTTTCAGATAAATGT---CAAGATTATGCTTCAGAATAAACAGTTGAC--TGGTC
gi|11 : ataataatacaacattatacatatatacatgtcgtcag-T-ATATA-CTTC---ATAAGGAGTTAATAGCACTGGTGGATTCTATCCAGTTCGGAT------ATTT-AA------CTTAAGA----TGTATAATT--GC-AACATAACCAGGAAGAGAGTTCCAAAT-TGTTGCCACCAAATT----AAGCATTCTT--GAAAGATCTAACCGAAATCAGTCTT
gi|12 : tacgaacaatagACTTT-ATTTCAAGAGGTTACACAGTC---CAACATGCTGGATCTTCCCT-GTGTGCCTTCATGT-TATACATATATACATTTT-AAA-ACAT------AATT-----AGTGGCA----GA-TTCAAaa
gi|14 : AAAT-T-TTAGCACCAGAGTATGAAAGCATTTTTT-GATATATTT---CAAGATTAGGCTTTGGAATATACAGTTGACTTTGGTCACCTGACCTTAAATTAATGCCATGAAAGTCACTCTCAAtacaaacatgtacaatgtacttacaaatagtttacatactagttacttagaca
gi|15 : caAAAAATAATAATAATCAGACTTG-ATTTCAAGAGGTGACATGGTCAAACAAAATGCC-GATCTTTCTT-GTATGCATCTATAT-T---TATATTTACATTTT-AAA-AC--------AATTCA---AGTG
gi|16 : AA-------T------AGAGAA---ACAGTAA---ATCAGCATT------A----CGTG--TG---TACATAATACATGTAGTAATGTTATATGACGAATACCATAGTGCAAAAA--AAGCACATTAGTATa
gi|17 : aagttaaACTTT-ATTTCAAGAGGTTACACAGTC---CAACATGCTGGATCTTCCCT-GTGTGCCTCGAAAT------ATATATAC
gi|18 : TAA--AGACT---ATTTCAAAAGGTTACACAATC---CAACATGCTGTTTCTTCCCT-GTGTGCCTCtga
gi|19 : CTTTGGTTGCCTGATCTTAAATTAATGCCATGTACATCACaaaaacta
gi|2 : TAATAATAATAATAATAA--AGATTTA-ATTTCAAGAGGTTACACAGTC---CAACATGATGGATCTTCCCT-GTGTGCCTCCATAT-TATACATATATACATTTT-AAA-ACAT------AATT-----AGTGGCA----GA-TTCAAG------TAA-------T------AGAGAACAAACAGAAA---ATCAGCATT------A----CATA-ATG---TACA--A-ATGT-CAG--ATG--A-ATTAAGAATAACATGTTACAAAAATCAAGCACATTAGAATACAAGTC---AT-T-ATATA-CTTC---ATTAGGAGTTAGTAGCACTGGTGGATTTTATCCACTTCAGATAATTTGATTC-AAAATTAACTAAAGA----TGCAGAGTT--ACTAACAGAACCAGGAAGTGAGTTCCAAAT-T-TAAGCACCAGAGTATG-AAGCGTTTTTC-GATATATTT---CAAGATTAGGCTTTGGAATATACAGTTGACTTTGGTCACTTGACCTTAAATTAATGCCATGAAAGTCACTCCCAAAAC
gi|3 : TAATAATAATGAAAATGA--AGACTTTTAATTCAAGAGATTACACAGCC---CAACATG-TGTA-CTTCCATAGTATACATATATATATATACAT------ATTTT-AAACACAA------AA-------AGTGACA----GA-TTCAA
gi|3 : acgggaaacagacgtacgcacccatgtagatcaggcgattacaggtagttataaacactgaatatatgtatatttactgtatataaatatatgtatgtaaactagaattaaagtaccagttagtaagcatctttttctgttta-AAA-AGAT------AA----------AGCA-----A-TT---G------CAA-------T------AGAGAACAAACAGGAA---ATCAGCATT------A----CAT--ATGT--TAC----------------------ATGAAGAATACCATGGTACACAAATCAAGCATATtacatgtagttacaaatatatgagacacttaagcattttgaaaagttgaagatatatgaaaagataaagcaattgcaatagagaacaaacaggaaatcagcattacatatgttacatgaagaataccatggtacacaaatcaagcatat
gi|4 : acgggaaacagacgtacgcacccatgtagatcaggcgattacaggtagttataaacactgaatatatgtatatttactgtatataaatatatgtatgtaaactagaattaaagtaccagttagtaagcatctttttctgtttataataataatgaaaatgaagacttttaattcaagagattacacagcccaacatgtgtacttccatagtatacatatatatatatacatattttaaacacaaaaagtgacagattcaatacatgtagttacaaatatatgagacacttaagcattttgaaaagttgaagatatatgCATAC-TAGAAACTTAGGCATTTTGAAA-AGATGAAAAGAATT-----AA-AACA-----A-TT---G------TAA-------T------AGAGAACAAACAGAAA---ATCATCATT------A----CATA-ATG---TAT------------G--ATG--A-ATTAAGAATAACATGGTACAAAAATCAAGTACATTAGAATACAAGTA---AT-T-ATATA-CTTC---ATTAGGAGATAGTGACACTGGTGGGTTTTATCCACTTCAGATAATTTGATTT-AAAATTAGCTAAAGA----TGCAGAATT--ACTAACAGAACCAGGAAGTGAGTTCCAAAT-T-TTAGCACCGGAGTATGAAAGTGTTTTTC-AATATATTT---CAAGATTAGCCTTTGGAATATACAGTTGGCTTTGGTCACCTGACCTTAAATTAATGCCATGAAAGTCACTCCAAAAA
gi|5 : caatacaattatgtatttacaaatacgtttaG------CAA-------T------AGAGAACATACAGAAA---ATCAGCATT------A----CATA-ATG---TACA--A-ACAT-CTG--ATG--A-ATTAAGAATAACATGGTACAAAAATCAAGCACATTAGAATAAAAGTC---AT-T-ATAAA-CTTC---ATTAGGAGTTAGTAACACTAGTAGACTTTATCCACTTCCGATAATTTGACTT-AAAAATAACTAAAGA----TGTAGAATT--ACTAACAGAACCAGGAAGTGAGTTCCAAAT-T-TTAGCACCAGAGTATGAAAGTGTTTTTC-GATATATTT---CAAGATTAGGCTTTGGAATGTACAGTTGACTTTGGTCACCTGACCTTAAATTAATGCCATGAAAGTCACTCACAAA
gi|6 : catattgaaaagattaaaagaattaaaagaattCAGAAA---ATCATCATT------A----CATA-ATG---TACA--A-ACGT-CAG--ATG--G-ATGAAGAGTAACATGGTACCAAAATCAAGCACATTATAATACAAGTC---ATAC-ATATA-CTTC---ATTAGGAGTTTGTTACACTGGTAGATTTTATCCACTTCAGATAATTTGATTT-AAAATTAACTAAAGA----TGTAGAATT--ACTAACAGAACCAGGAAGTAAGTTCCAAAT-T-TTAGCACCAGAGTATGAAAGCGTTTTTC-GATATATTT---CAAGATTAGGCTTTGGAATATACAGTTGACATTGGTCACCTGACCTAAAATTAATGCCATGAAAGTCACTCCCAAAAC
gi|7 : AGAAA---ATCAGCGTT------ATTTACATGTATG---TACA--T-ACAT-TAT--ATG--A-A-GAAGGCTA---TGGTACAAACATAACGCACACCAG----CAAATCTGCAT-TTATGTATCTTCTTAATTAGGAGTTAATAACACTGGTGGACTGAGTCAACTTCAGATAATTTTGTTTAAAAATTAG--ACACA----TATGAAGTTTAACTAACAAAAC
gi|8 : gaaacataagcattttgaaaaggtgaaaatatacaaagggtaaacgcacttataatggCATAC-TAGAGACTTAAGCATTTTGAAA-AGAT------GAAA-----AGTTGAA----GAATTAAAG------CAA-------TTGTTATAAAGAACAAACAGAAA---ATCAGCATA------A----CATA-ATG---TACA--A-ACAT-TAG--ATG--A-ATGAAGAATAACATGGTAC----AT---G-GTATTAGAATACAAGTC---ATAC-ATATA-CTT
gi|9 : tttaaaacataattagtggcagattctatacatgtatttacaaaaaaagtttaTGATAATAATCATTATAA--AGACT---------AGAGGTTACACAGTC---CAACATGCTGGATCTTCCCT-GTGTGCCTCCAAAT-TTTACATTAATACATTTC--AA-ACAT------AATT-----AGTGACA----CA-TTCAA
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|13 ): ACGGAAAATATCAAAGGTGCACAACCACCTGTGGAACAAACGAAATTCTTATAGTTAATTATTAGTATTAAAACAATATATATATATATTTACATATATATATATAGATATAAATTATGATGGTAAATAAACTATAATTAAGATGTA