lowQualScore : 1 1 11 555555555555555555555555555 111111 11 111 11 33 1 1111
lowQualScore : 8888 0 444 1 6 66666 22 11 333 22 6 2 2 2 2 0 333 222222222222222222222222222 5 666666 000000 22 333 55 2 4 55 4 00 5 5 9999 3 5 6
lowQualScore : .... . ... . . ..... .. .. ... .. . . . . . . ... ........................... . ...... ...... .. ... .. . . .. . .. . . .... . . .
lowQualScore : 2222 1 777 7 1 22222 99 11 777 22 7 1 1 6 1 8 777 222222222222222222222222222 8 888888 333333 77 222 00 6 3 00 0 88 2 0 9999 4 1 0
consensus : NAATAATCAACAAGAATCAGCACGCTACTACAG---TAATACAACT---TCTCCAAGAAACATCTTTTGACGGGAA-----CCTCCATA--TCNACATAA---T-CAACT-TAGC-A-CAAGA-ATCGTCTTCAAGAAT---CATCTTT-------AA---TCAT-TTTA---AA-CAACTTAT------CTACAA------GAATCTTCCT--AGAATNTACATCGTCGGGCTACTCGTCTGTTTGACAGCTTCGGTCTCAAATCGCTTTAACGCAATGCNTCAAGCTCAGCGGGTTGAAATTGACCCAGTCAGCGGCAACTTTAAACTCGAC-AAAAAAGATCTTAACAACT---NGATCAAGCACGGAAGATGGAACATCATATCGCCGAGAAACATCTTAGAGA
Reference ( gi|1 ) : GAATAATCAACAAGAATCAGCATGCTACTACAG---CAATACAACT---TCTCCAAGAAACAGCTTTTGACCGGAA-----CCTCCATA--TCTGCATAA---T-CAACT-TAGC-A-CAAGA-ATCGTCTTCAAGAAT---CATCTTT-------AA---CCATATTTA---AA-CAACTTAT------CTACAA------GAATCTTCCT--AGAATGTACATCGTCGGGCTACTCGTCTGCCTGACAGCTTCGGTTTCAAATCGCTTTAACGCAATGCATCAAGCTCAGCGGGTTAAAATTGACCCAGTCAGTGGCAACTTTAAACTCGGCAAAAAAAGATCTTGAAAACT---TGATCAAGCATGGAAGATGGAGCATCATATTGCCGAGAAACATCTTAGAGA
gi|2 : AATAATCTACAAGAATCAGCATGCTACAATAG---TACTACAGCT---ACTCCAAGAAACATCTTTTGACGGGAA-----CCTCCATA--TCCACAGAA---T-CAACT-AAGT-T-CAAAA-ATCGTCTTCAAGAAT---CATCTTT-------AG---TCATCTTTA---AA-CAACTTAT------CTACTA------GAATCTTCCT--AGAATTTACATCGTCGGGCTACTCGTCTGTTTGACAGCTTCGGTCTCAAATCGCTTTAACGCAATGCAACAAGCTCAGCGGGATGAAATTGACCCAGTCAACAGCAACTTTAAACTCGAC--AAAAAGATCTTAACAACT---GGATAAAGCAAGGAAGATGTAACATCATATCGCCAAGAACCAGTCTAGAGA
gi|5 : AATAATCAACAAGAATCAGCACGCTATTACA------ATACAACT---TCTCCAAGAAACAGCTT--------------------ATA--TCTGCATAA---T-CAACT-TTGC-A-CAAGA-ATCGTCTTCAAGAAC---CATCTTT-------AA---TCATCTTTA---AA-CAACTTAT------CTACAACTACAAGAATCTTCCT--AGAATGGACATCATCGGGCTACTC---TGATTGACAGCTTCGGTTTCAAATCGCTTATACGCAAGGCTTCAAGCTCAGCAGGTTGAAATTGACTCAGTCAGCGGAAATTTTAAACTCGAC-AAAAAAGATCTTAACAACTTGATGATCAAATATGGAAGAAGGAACATTATACCACAGAGAAACATCTTAGAAA
gi|6 : ATATTCAACAAGAATCAGCACGCTACTACAG---CAATACAACT---TCTCCAAGAA-------------GGAA-----CCTCCATA--TCAACATAA---T-CAACT-TAGC-A-CAAAA-ATCGTCTTCAATAAT---CATCTTT-------AA---TCATCTTTA---AA-CAGCTTAT------CTACAA------GAATCTTCCT--AGGATGTACATCGTCGGGCTACTCGTCTGTTTGACAGCTTCGGTTTTAAATCGCTTTAACGCAATACATCGAGCTCAGCGGGTTGAAATTGACCCAGTCAGCGGCAACTTTAAACTCGGC--AAAAAGATCCTAACAACT---TGATCAAGCACGGGAGATGGACCATTATATCGCCGAGAAACATCTTAGAGA
gi|3 : ATAATCAACAAGAATCAGCACACTACTACAG---CAATACAACT---TCTCCAAGAAACAGCTTTTGACTGGAA-----CCTCCATA--TTTGCATAA---T-CAACT-TAGC-A-CAAGA-ATCGTCTCCAAGAAT---C-------------AA---C----TTTA---AA-CAACTTATCTACAACTACAA------TAATCTTCCT--AGAATGTACATCGTCGGGCTACTCTTAT---TGACAGCTTCGGTTTCAAATCGCTTATACGCAAGGCATCAAGCTCAGCGGGTTAAAATTGACTCGGTCAGTGGAAATTTTAAACTCGACAAAAAAAGATCTTAACAACTTGATGATCAAATACGGAGGATGGAACATCAAACCACCGAGAAACATCTTAGAAA
gi|4 : gATAATCAACAAGAATCAGCATGCTTCTACAG---TTATACAACT---TCTCCAAGAAACATCTTTTGACGGGAA-----CCACCATA--TCTACATCA---T-CAACT-TATC-A-CGAGA-ATCATCTTCAAGAAA---CAACTTT-------AA---TCAT-----------CA---TAT------CTACAA------GAATCTTCCT--AGGATGTGCATCGTTGGGCTACTCGTCTGTTTGATCGCTTCGGTTTCAAATCCATTTAACGCAATGCTTCAAACTCAACAGGTTGAAATTGACCCAGTCAGCAGCAACTTCAAGCTCGAC-AAAAAAGATCTCAACAAAT---GAATCAAGCACGGAAGATGGAGCATCATATCGCCGAGAAACAGCGTAGAAA
gi|11 : gATAATCTCCAAAAATTAGCATGCTACAATAG---CACTACAGCT---ACTCCAAGAAACATCTTTTGA------------------A--TT----TAA---A-CAACT-TATCTA-CTAGA-ATCTTCCT--AGAATTTACATC
gi|9 : ATAATCAACAACAATCAGCATGCTGCTACAG---TAATAAAACTACGTCTCCAAGAATCATCTTTCAACGGGAA-----CCACCATA--TCAACATAA---T-TAACA-TAAC-A-ACATA-ATCGTCTTCAAGAAA---CTTCTTC-------AA---TCGTAGT-----AA-CATCATAC------CTACAA------GAATCTTCCT--ATGATGTACgtcgggctactcgtctgtttgacagcttcggtctcaaatcgctttaacgcaatgcatcaagctcagcgggttgaaattgacccagtcaacagcaactttaaactcgacaaaaatatcttaacaactggatcaagcaaggaagatgga
gi|10 : ttatcgtttttatgcttttaacgttagaaatggtcgttttgTAATCAACAAGAATCAGCATGCTACAATAG------TACA------TCTCCAAGAAACATCTTTTGACGGGAA-----CCTCCATA--TCAACAGAA---T-CAACT-TAGC-T-AAAAA-ATGGACTTCAAGAAT---CATCTTT-------AG---TCTTCTTTA---AATCAACTTAT------CTACTA------GAATCTTCC---AGAATCTTCATCGTCGGGCTACTCGTCTGTTTGACAGCTTAGGTCTCAAATCGCTTTAACGCAATGCTTGAAGCTCAGCGGGTTGAGATCGACCCAGTCAACAGCAACCTTAtgaactctcaaatagatccagtgacgagtcattccatcgtgaggctaatcgcttcaagctcagtaaggtttaaa
gi|15 : TAATAAACAAGAATCAGCATGCTACTGCAG---TAAAACAACT---TCTCCAAGAAACATCTTTTGACAGGAA-----CCTCCATA--TCTACATAA---T-CAACT-TATC-A-CAAGA-CTCGTCTTCAAGAAT---CATCTTT-------AA---TCAT
gi|14 : tcatcgattttatgtttttaacgtggtgttaaaaatggtcgctttgggTAATAAACAAGAATCAGCATGCTACTGCAG---TAAAACAACT---TCTCCAAGAAACATCTTTTGACAGGAA-----CCTCCATA--TCTACATAA---T-CAACT-TATC-A-CAAGA-CTCGTCTTCAAGAAT---CATCTTT-------AA---TCAT-----------CA---TAT------CTACAcatat
gi|13 : tcatcgattttatgtttttaacgtggtgttaaaaatggtcgctttgggTAATAAACAAGAATCAGCATGCTACTGCAG---TAAAACAACT---TCTCCAAGAAACATCTTTTGACAGGAA-----CCTCCATA--TCTACATAA---T-CAACT-TATC-A-CAAGA-CTCGTCTTCAAGAAT---CATCTTT-------AA---TCAT-----------CA---TAT------CTACAgt
gi|12 : tcatcgattttatgtttttaacgtggtgttaaaaatggtcgctttgggAATCAGCAAGAAACAGCAAGCTTCTCCAGGGTTAAT-CTACA---TCTTCAAGAATCATTTTTCTAC-GGAAACTGGCTTTCATA--T----GTAA---C-C---T-TTGT-ATCAACATAT--TCATCAAGAAT---CACCAAT-------AA---TCA-AC------AA-CAGCT---------CTACAA------GAATCgt
gi|16 : catcgtttttgtttttaacgaggcattagataggggttttttttaaAAGCAACAAGAATTGGCAAGC--CT-CAA---CAGTA---------CTTTAAGAATCATCTTTCGACGGGAA-----CATTCTTA--TCAACAAAACTGT-CAACaacatatctac
gi|8 : ACAAGAATCAGCATGCTTCAATAG---CACTACAGCT---ACTCCAAGAAACATCTTTTGACGGGAA-----TCTCCATA--TCCACAGAA---T-CAACT-TAG--------------TCTTCAAGAAT---CCTCTTT-------------------TA---AA-CAACTTAT------CTAATA------GAATCTTC-T--AGAATCTTCATCGTTGGGCTACTCGTCTGTTTGACAGCTTCGGTCTCAAATCGCTTTAATGTAATGCATCAAGCTCAGCGGGTTGAGATTGACCCAGTCAACAGCAACTTTAAACTCGACAA--------C------------------AGCATGGAAGATGGAACATCATATCGCCatgtcaacttatc
gi|7 : tttTACAATAG---TATTACAGAT---ACTCCAAGAAACATCTTTTGACGGGAA-----CCTCCATA--TCT-----------------TAGC---TAAAA-ATCGCCTTCAAGAAT---CATTTTT-------AG---TCATCTTTA---AA-CAACTTAT------CTACTA------GAATCTTCCT--AGAATTTTCATTGTCGGGCTACTCGCCTGTTTGACAGCTTCGGTCTCAAATCGCTTTAACGCAATGCTTCAAGCTCAGCGAGTTGAGATTAACCCAGTCAACAGCAACTTTAAACTCGAC--AAAAAGATCTTGACAACT---GGATCAAGCATGGAAGATGGAACATCATATCGCCAAG
gi|11 : gAA-----TCTCCAAAAATTAGCATGC---TACAA---TAGC-A-CTACA-GCTA-CTCCAAGAAA---CATCTTTT------GA-------ATTTA---AA-CAACTTAT------CTACTA------GAATCTTCCT--AGAATTTACATCGTCGGGCTACTCGTCTGTTTGACAGCTTCGGTCTCAAATCGCTTTAACGCAATGCATCAAGCTCAGCGGGTTGAAATTGACCCAGTCAACAGCAACTTTAAACTCGAC--AAAAATATCTTAACAACT---GGATCAAGCAAGGAAGATGGA
gi|15 : atA--TCAGCATGC---T---ACTGCAGT-A-AAACA-A-CTTCTCCAAGAAA---CATCTTTTGACAGGAACCTCCATATCTACATAATCAACTTAT------C-ACAA------GACTCGTCTTCAAGAAT---CATC
gi|14 : tcatcgattttatgtttttaacgtggtgttaaaaatggtcgctttgggtaataaacaagaA--TCAGCATGC---T---ACTGCAGT-A-AAACA-A-CTTCTCCAAGAAA---CATCTTTTGACAGGAACCTCCATATCTACATAATCAACTTAT------C-ACAA------GACTCGTCTTCAAGAAT---CATCtttaatcatcatat
gi|13 : tcatcgattttatgtttttaacgtggtgttaaaaatggtcgctttgggtaataaacaagaA--TCAGCATGC---T---ACTGCAGT-A-AAACA-A-CTTCTCCAAGAAA---CATCTTTTGACAGGAACCTCCATATCTACATAATCAACTTAT------C-ACAA------GACTCGTCTTCAAGAAT---CATCtttaatcatcatatctacagt
gi|19 : tcatcgattttatgtttttaacgtggtgttaaaaatggtcgctttgggtaataaacaagaC-A-CAAGA-CTCGTCTTCAAGAAT---CATCTTT-------AA---TCAT-----------CA---TAT------CTACAGT-----GAACCtttaatcatcatatctacagt
gi|18 : AAAAAGATCTTAACAACT---TGATCAAGCACGGAAGAAGGAATATCATACCGCCGAGAAACATCTTAGAGAc
1 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|17 ): TAATTGGTTTTATGTTTTTTAAAGTGGCGTTAGAAAGGGTCATTTTGACAACCAACAAGAATTGGCATGACTCAAAATCAACCTTCT
Alignments
lowQualScore : 22222222222222222222 111111 22 1111
lowQualScore : 3 1 444 0 444 5555 33 4 444 2 1 2 0 2 77777777777777777777 6 0 555555 0 3 1 1 11 6666 1
lowQualScore : . . ... . ... .... .. . ... . . . . . .................... . . ...... . . . . .. .... .
lowQualScore : 9 2 777 2 777 3333 44 3 444 5 1 5 2 5 33333333333333333333 8 9 333333 3 3 0 0 77 4444 4
consensus : NAATAATCAACAAGAATCAGCACGCTACTACAG---TAATACAACT---TCTCCAAGAAACATCTTTTGACGGGAACC----TCCATA--TCNACATAA---T-CAACTTAGCA-CAAGA-ATCGTCTTCAAGAATCATCTTTAATCA-------T-TTTA----AA-CAACTTAT------CTACAA-GAATCTTCCTAGAATGTACATCGTCGGGCTACTCGTCTGTTTGACAGCTTCGGTCTCAAATCGCTTTAACGCAATGCATCAAGCTCAGCGGGTTGAAATTGACCCAGTCAGCGGCAACTTTAAACTCGAC-AAAAAAGATCTTAACAACT---TGATCAAGCACGGAAGATGGAACATCATATCGCCGAGAAACATCTTAGAGA
Reference ( family-3399 ) : NAATAATCAACAAGAATCAGCACGCTACTACAG---TAATACAACT---TCTCCAAGAAACATCTTTTGACGGGAACC----TCCATA--TCNACATAA---T-CAACTTAGCA-CAAGA-ATCGTCTTCAAGAATCATCTTTAATCA-------T-TTTA----AA-CAACTTAT------CTACAA-GAATCTTCCTAGAATNTACATCGTCGGGCTACTCGTCTGTTTGACAGCTTCGGTCTCAAATCGCTTTAACGCAATGCNTCAAGCTCAGCGGGTTGAAATTGACCCAGTCAGCGGCAACTTTAAACTCGAC-AAAAAAGATCTTAACAACT---NGATCAAGCACGGAAGATGGAACATCATATCGCCGAGAAACATCTTAGAGA
gi|1 : AATAATCAACAAGAATCAGCATGCTACTACAG---CAATACAACT---TCTCCAAGAAACAGCTTTTGACCGGAACC----TCCATA--TCTGCATAA---T-CAACTTAGCA-CAAGA-ATCGTCTTCAAGAATCATCTTTAACCA-------TATTTA----AA-CAACTTAT------CTACAA-GAATCTTCCTAGAATGTACATCGTCGGGCTACTCGTCTGCCTGACAGCTTCGGTTTCAAATCGCTTTAACGCAATGCATCAAGCTCAGCGGGTTAAAATTGACCCAGTCAGTGGCAACTTTAAACTCGGCAAAAAAAGATCTTGAAAACT---TGATCAAGCATGGAAGATGGAGCATCATATTGCCGAGAAACATCTTAGAGA
gi|10 : gTAATCAACAAGAATCAGCATGCTAC---AA---TAGTACA------TCTCCAAGAAACATCTTTTGACGGGAACC----TCCATA--TCAACAGAA---T-CAACTTAGCT-AAAAA-ATGGACTTCAAGAATCATCTTTAGTCT-------TCTTTA----AATCAACTTAT------CTACTA-GAATCTTCC-AGAATCTTCATCGTCGGGCTACTCGTCTGTTTGACAGCTTAGGTCTCAAATCGCTTTAACGCAATGCTTGAAGCTCAGCGGGTTGAGATCGACCCAGTCAACAGCAACCTTA
gi|11 : AATC----TCCAAAAATTAGCATGC---TACAA--TAGCA-CTACA-GCTA-CTCCAAGAAACATCTTT--TGA-------A-TTTA----AA-CAACTTAT------CTACTA-GAATCTTCCTAGAATTTACATCGTCGGGCTACTCGTCTGTTTGACAGCTTCGGTCTCAAATCGCTTTAACGCAATGCATCAAGCTCAGCGGGTTGAAATTGACCCAGTCAACAGCAACTTTAAACTCGAC--AAAAATATCTTAACAACT---GGATCAAGCAAGGAAGATGGA
gi|12 : atAATCAGCAAGAAACAGCAAGCTTCTCCAGGGTTAAT-CTACA---TCTTCAAGAATCATTTTTCTACGGAAACTGGCTTTCATA--T----GTAA---C-C---TTTGTATCAACATAT--TCATCAAGAATCACCAATAATCAACAACAGC-TCTACAAGAATCAACATAT------CTAC
gi|13 : catcgtttttgtttttaacgaggcattagataggggttttttttaaTAATAAACAAGAATCAGCATGCTACTGCAG---TAAAACAACT---TCTCCAAGAAACATCTTTTGACAGGAACC----TCCATA--TCTACATAA---T-CAACTTATCA-CAAGA-CTCGTCTTCAAGAATCATCTTTAATCA-------T------------CA---TAT------CTACA
gi|14 : tcatcgattttatgtttttaacgtggtgttaaaaatggtcgctttgggTAATAAACAAGAATCAGCATGCTACTGCAG---TAAAACAACT---TCTCCAAGAAACATCTTTTGACAGGAACC----TCCATA--TCTACATAA---T-CAACTTATCA-CAAGA-CTCGTCTTCAAGAATCATCTTTAATCA-------T------------CA---TAT------CTACAgt
gi|15 : tcatcgattttatgtttttaacgtggtgttaaaaatggtcgctttgggTAATAAACAAGAATCAGCATGCTACTGCAG---TAAAACAACT---TCTCCAAGAAACATCTTTTGACAGGAACC----TCCATA--TCTACATAA---T-CAACTTATCA-CAAGA-CTCGTCTTCAAGAATCATCTTTAATCA-------T-gt
gi|16 : tcatcgattttatgtttttaacgtggtgttaaaaatggtcgctttgggAAGCAACAAGAATTGGCAAGCCTCAACAG---TA------------CTTTAAGAATCATCTTTCGACGGGAACA----TTCTTA--TCAACAAAACTGT-CAACcatat
gi|18 : AAAAAGATCTTAACAACT---TGATCAAGCACGGAAGAAGGAATATCATACCGCCGAGAAACATCTTAGAGAatgtcaacttatc
gi|19 : CA-CAAGA-CTCGTCTTCAAGAATCATCTTTAATCA-------T------------CA---TAT------CTACAGTGAACC
gi|2 : AATAATCTACAAGAATCAGCATGCTACAATAG---TACTACAGCT---ACTCCAAGAAACATCTTTTGACGGGAACC----TCCATA--TCCACAGAA---T-CAACTAAGTT-CAAAA-ATCGTCTTCAAGAATCATCTTTAGTCA-------TCTTTA----AA-CAACTTAT------CTACTA-GAATCTTCCTAGAATTTACATCGTCGGGCTACTCGTCTGTTTGACAGCTTCGGTCTCAAATCGCTTTAACGCAATGCAACAAGCTCAGCGGGATGAAATTGACCCAGTCAACAGCAACTTTAAACTCGAC--AAAAAGATCTTAACAACT---GGATAAAGCAAGGAAGATGTAACATCATATCGCCAAGAACCAGTCTAGAGAc
gi|3 : ATAATCAACAAGAATCAGCACACTACTACAG---CAATACAACT---TCTCCAAGAAACAGCTTTTGACTGGAACC----TCCATA--TTTGCATAA---T-CAACTTAGCA-CAAGA-ATCGTCTCCAAGAATCA---------A-------C-TTTA----AA-CAACTTATCTACAACTACAA-TAATCTTCCTAGAATGTACATCGTCGGGCTACTCTTA---TTGACAGCTTCGGTTTCAAATCGCTTATACGCAAGGCATCAAGCTCAGCGGGTTAAAATTGACTCGGTCAGTGGAAATTTTAAACTCGACAAAAAAAGATCTTAACAACTTGATGATCAAATACGGAGGATGGAACATCAAACCACCGAGAAACATCTTAGAAA
gi|4 : gATAATCAACAAGAATCAGCATGCTTCTACAG---TTATACAACT---TCTCCAAGAAACATCTTTTGACGGGAACC----ACCATA--TCTACATCA---T-CAACTTATCA-CGAGA-ATCATCTTCAAGAAACAACTTTAATCA-------T------------CA---TAT------CTACAA-GAATCTTCCTAGGATGTGCATCGTTGGGCTACTCGTCTGTTTGATCGCTTCGGTTTCAAATCCATTTAACGCAATGCTTCAAACTCAACAGGTTGAAATTGACCCAGTCAGCAGCAACTTCAAGCTCGAC-AAAAAAGATCTCAACAAAT---GAATCAAGCACGGAAGATGGAGCATCATATCGCCGAGAAACAGCGTAGAAA
gi|5 : gAATAATCAACAAGAATCAGCACGCTATTAC------AATACAACT---TCTCCAAGAAACAGCTT-------------------ATA--TCTGCATAA---T-CAACTTTGCA-CAAGA-ATCGTCTTCAAGAACCATCTTTAATCA-------TCTTTA----AA-CAACTTATCTACAACTACAA-GAATCTTCCTAGAATGGACATCATCGGGCTAC---TCTGATTGACAGCTTCGGTTTCAAATCGCTTATACGCAAGGCTTCAAGCTCAGCAGGTTGAAATTGACTCAGTCAGCGGAAATTTTAAACTCGAC-AAAAAAGATCTTAACAACTTGATGATCAAATATGGAAGAAGGAACATTATACCACAGAGAAACATCTTAGAAA
gi|6 : ATATTCAACAAGAATCAGCACGCTACTACAG---CAATACAACT---TCTCCAAGAA-------------GGAACC----TCCATA--TCAACATAA---T-CAACTTAGCA-CAAAA-ATCGTCTTCAATAATCATCTTTAATCA-------TCTTTA----AA-CAGCTTAT------CTACAA-GAATCTTCCTAGGATGTACATCGTCGGGCTACTCGTCTGTTTGACAGCTTCGGTTTTAAATCGCTTTAACGCAATACATCGAGCTCAGCGGGTTGAAATTGACCCAGTCAGCGGCAACTTTAAACTCGGC--AAAAAGATCCTAACAACT---TGATCAAGCACGGGAGATGGACCATTATATCGCCGAGAAACATCTTAGAGA
gi|7 : TACAATAG---TATTACAGAT---ACTCCAAGAAACATCTTTTGACGGGAACC----TCCATA--TC----------------TTAGC--TAAAA-ATCGCCTTCAAGAATCATTTTTAGTCA-------TCTTTA----AA-CAACTTAT------CTACTA-GAATCTTCCTAGAATTTTCATTGTCGGGCTACTCGCCTGTTTGACAGCTTCGGTCTCAAATCGCTTTAACGCAATGCTTCAAGCTCAGCGAGTTGAGATTAACCCAGTCAACAGCAACTTTAAACTCGAC--AAAAAGATCTTGACAACT---GGATCAAGCATGGAAGATGGAACATCATATCGCCAAG
gi|8 : gACAAGAATCAGCATGCTTCAATAG---CACTACAGCT---ACTCCAAGAAACATCTTTTGACGGGAATC----TCCATA--TCCACAGAA---T-CAACTTA-------------GTCTTCAAGAATCCTC---------------T-TTTA----AA-CAACTTAT------CTAATA-GAATCTT-CTAGAATCTTCATCGTTGGGCTACTCGTCTGTTTGACAGCTTCGGTCTCAAATCGCTTTAATGTAATGCATCAAGCTCAGCGGGTTGAGATTGACCCAGTCAACAGCAACTTTAAACTCGAC-AA-------C------------------AGCATGGAAGATGGAACATCATATCGCC
gi|9 : tttATAATCAACAACAATCAGCATGCTGCTACAG---TAATAAAACTACGTCTCCAAGAATCATCTTTCAACGGGAACC----ACCATA--TCAACATAA---T-TAACATAACA-ACATA-ATCGTCTTCAAGAAACTTCTTCAATCG-------T-AGT-----AA-CATCATAC------CTACAA-GAATCTTCCTATGATGTAC
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|17 ): TAATTGGTTTTATGTTTTTTAAAGTGGCGTTAGAAAGGGTCATTTTGACAACCAACAAGAATTGGCATGACTCAAAATCAACCTTCT
Alignments
lowQualScore : 22222222222222222222 111111 22 1111
lowQualScore : 3 1 444 0 444 5555 33 4 444 2 1 2 0 2 77777777777777777777 6 0 555555 0 3 1 1 11 7777 1
lowQualScore : . . ... . ... .... .. . ... . . . . . .................... . . ...... . . . . .. .... .
lowQualScore : 9 2 777 2 777 3333 44 3 444 5 1 5 2 5 33333333333333333333 8 9 333333 3 3 4 4 77 0000 4
consensus : NAATAATCAACAAGAATCAGCACGCTACTACAG---TAATACAACT---TCTCCAAGAAACATCTTTTGACGGGAACC----TCCATA--TCNACATAA---T-CAACTTAGCA-CAAGA-ATCGTCTTCAAGAATCATCTTTAATCA-------T-TTTA----AA-CAACTTAT------CTACAA-GAATCTTCCTAGAATGTACATCGTCGGGCTACTCGTCTGTTTGACAGCTTCGGTCTCAAATCGCTTTAACGCAATGCATCAAGCTCAGCGGGTTGAAATTGACCCAGTCAGCGGCAACTTTAAACTCGAC-AAAAAAGATCTTAACAACT---TGATCAAGCACGGAAGATGGAACATCATATCGCCGAGAAACATCTTAGAGA
Reference ( family-3399 ) : NAATAATCAACAAGAATCAGCACGCTACTACAG---TAATACAACT---TCTCCAAGAAACATCTTTTGACGGGAACC----TCCATA--TCNACATAA---T-CAACTTAGCA-CAAGA-ATCGTCTTCAAGAATCATCTTTAATCA-------T-TTTA----AA-CAACTTAT------CTACAA-GAATCTTCCTAGAATGTACATCGTCGGGCTACTCGTCTGTTTGACAGCTTCGGTCTCAAATCGCTTTAACGCAATGCATCAAGCTCAGCGGGTTGAAATTGACCCAGTCAGCGGCAACTTTAAACTCGAC-AAAAAAGATCTTAACAACT---TGATCAAGCACGGAAGATGGAACATCATATCGCCGAGAAACATCTTAGAGA
gi|1 : AATAATCAACAAGAATCAGCATGCTACTACAG---CAATACAACT---TCTCCAAGAAACAGCTTTTGACCGGAACC----TCCATA--TCTGCATAA---T-CAACTTAGCA-CAAGA-ATCGTCTTCAAGAATCATCTTTAACCA-------TATTTA----AA-CAACTTAT------CTACAA-GAATCTTCCTAGAATGTACATCGTCGGGCTACTCGTCTGCCTGACAGCTTCGGTTTCAAATCGCTTTAACGCAATGCATCAAGCTCAGCGGGTTAAAATTGACCCAGTCAGTGGCAACTTTAAACTCGGCAAAAAAAGATCTTGAAAACT---TGATCAAGCATGGAAGATGGAGCATCATATTGCCGAGAAACATCTTAGAGA
gi|10 : gTAATCAACAAGAATCAGCATGCTAC---AA---TAGTACA------TCTCCAAGAAACATCTTTTGACGGGAACC----TCCATA--TCAACAGAA---T-CAACTTAGCT-AAAAA-ATGGACTTCAAGAATCATCTTTAGTCT-------TCTTTA----AATCAACTTAT------CTACTA-GAATCTTCC-AGAATCTTCATCGTCGGGCTACTCGTCTGTTTGACAGCTTAGGTCTCAAATCGCTTTAACGCAATGCTTGAAGCTCAGCGGGTTGAGATCGACCCAGTCAACAGCAACCTTA
gi|11 : AATC----TCCAAAAATTAGCATGC---TACAA--TAGCA-CTACA-GCTA-CTCCAAGAAACATCTTT--TGA-------A-TTTA----AA-CAACTTAT------CTACTA-GAATCTTCCTAGAATTTACATCGTCGGGCTACTCGTCTGTTTGACAGCTTCGGTCTCAAATCGCTTTAACGCAATGCATCAAGCTCAGCGGGTTGAAATTGACCCAGTCAACAGCAACTTTAAACTCGAC--AAAAATATCTTAACAACT---GGATCAAGCAAGGAAGATGGA
gi|12 : atAATCAGCAAGAAACAGCAAGCTTCTCCAGGGTTAAT-CTACA---TCTTCAAGAATCATTTTTCTACGGAAACTGGCTTTCATA--T----GTAA---C-C---TTTGTATCAACATAT--TCATCAAGAATCACCAATAATCAACAACAGC-TCTACAAGAATCAACATAT------CTAC
gi|13 : catcgtttttgtttttaacgaggcattagataggggttttttttaaTAATAAACAAGAATCAGCATGCTACTGCAG---TAAAACAACT---TCTCCAAGAAACATCTTTTGACAGGAACC----TCCATA--TCTACATAA---T-CAACTTATCA-CAAGA-CTCGTCTTCAAGAATCATCTTTAATCA-------T------------CA---TAT------CTACA
gi|14 : tcatcgattttatgtttttaacgtggtgttaaaaatggtcgctttgggTAATAAACAAGAATCAGCATGCTACTGCAG---TAAAACAACT---TCTCCAAGAAACATCTTTTGACAGGAACC----TCCATA--TCTACATAA---T-CAACTTATCA-CAAGA-CTCGTCTTCAAGAATCATCTTTAATCA-------T------------CA---TAT------CTACAgt
gi|15 : tcatcgattttatgtttttaacgtggtgttaaaaatggtcgctttgggTAATAAACAAGAATCAGCATGCTACTGCAG---TAAAACAACT---TCTCCAAGAAACATCTTTTGACAGGAACC----TCCATA--TCTACATAA---T-CAACTTATCA-CAAGA-CTCGTCTTCAAGAATCATCTTTAATCA-------T-gt
gi|16 : tcatcgattttatgtttttaacgtggtgttaaaaatggtcgctttgggAAGCAACAAGAATTGGCAAGCCTCAACAG---TA------------CTTTAAGAATCATCTTTCGACGGGAACA----TTCTTA--TCAACAAAACTGT-CAACcatat
gi|18 : AAAAAGATCTTAACAACT---TGATCAAGCACGGAAGAAGGAATATCATACCGCCGAGAAACATCTTAGAGAatgtcaacttatc
gi|19 : CA-CAAGA-CTCGTCTTCAAGAATCATCTTTAATCA-------T------------CA---TAT------CTACAGTGAACC
gi|2 : AATAATCTACAAGAATCAGCATGCTACAATAG---TACTACAGCT---ACTCCAAGAAACATCTTTTGACGGGAACC----TCCATA--TCCACAGAA---T-CAACTAAGTT-CAAAA-ATCGTCTTCAAGAATCATCTTTAGTCA-------TCTTTA----AA-CAACTTAT------CTACTA-GAATCTTCCTAGAATTTACATCGTCGGGCTACTCGTCTGTTTGACAGCTTCGGTCTCAAATCGCTTTAACGCAATGCAACAAGCTCAGCGGGATGAAATTGACCCAGTCAACAGCAACTTTAAACTCGAC--AAAAAGATCTTAACAACT---GGATAAAGCAAGGAAGATGTAACATCATATCGCCAAGAACCAGTCTAGAGAc
gi|3 : ATAATCAACAAGAATCAGCACACTACTACAG---CAATACAACT---TCTCCAAGAAACAGCTTTTGACTGGAACC----TCCATA--TTTGCATAA---T-CAACTTAGCA-CAAGA-ATCGTCTCCAAGAATCA---------A-------C-TTTA----AA-CAACTTATCTACAACTACAA-TAATCTTCCTAGAATGTACATCGTCGGGCTACTCTTA---TTGACAGCTTCGGTTTCAAATCGCTTATACGCAAGGCATCAAGCTCAGCGGGTTAAAATTGACTCGGTCAGTGGAAATTTTAAACTCGACAAAAAAAGATCTTAACAACTTGATGATCAAATACGGAGGATGGAACATCAAACCACCGAGAAACATCTTAGAAA
gi|4 : gATAATCAACAAGAATCAGCATGCTTCTACAG---TTATACAACT---TCTCCAAGAAACATCTTTTGACGGGAACC----ACCATA--TCTACATCA---T-CAACTTATCA-CGAGA-ATCATCTTCAAGAAACAACTTTAATCA-------T------------CA---TAT------CTACAA-GAATCTTCCTAGGATGTGCATCGTTGGGCTACTCGTCTGTTTGATCGCTTCGGTTTCAAATCCATTTAACGCAATGCTTCAAACTCAACAGGTTGAAATTGACCCAGTCAGCAGCAACTTCAAGCTCGAC-AAAAAAGATCTCAACAAAT---GAATCAAGCACGGAAGATGGAGCATCATATCGCCGAGAAACAGCGTAGAAA
gi|5 : gAATAATCAACAAGAATCAGCACGCTATTAC------AATACAACT---TCTCCAAGAAACAGCTT-------------------ATA--TCTGCATAA---T-CAACTTTGCA-CAAGA-ATCGTCTTCAAGAACCATCTTTAATCA-------TCTTTA----AA-CAACTTATCTACAACTACAA-GAATCTTCCTAGAATGGACATCATCGGGCTAC---TCTGATTGACAGCTTCGGTTTCAAATCGCTTATACGCAAGGCTTCAAGCTCAGCAGGTTGAAATTGACTCAGTCAGCGGAAATTTTAAACTCGAC-AAAAAAGATCTTAACAACTTGATGATCAAATATGGAAGAAGGAACATTATACCACAGAGAAACATCTTAGAAA
gi|6 : ATATTCAACAAGAATCAGCACGCTACTACAG---CAATACAACT---TCTCCAAGAA-------------GGAACC----TCCATA--TCAACATAA---T-CAACTTAGCA-CAAAA-ATCGTCTTCAATAATCATCTTTAATCA-------TCTTTA----AA-CAGCTTAT------CTACAA-GAATCTTCCTAGGATGTACATCGTCGGGCTACTCGTCTGTTTGACAGCTTCGGTTTTAAATCGCTTTAACGCAATACATCGAGCTCAGCGGGTTGAAATTGACCCAGTCAGCGGCAACTTTAAACTCGGC--AAAAAGATCCTAACAACT---TGATCAAGCACGGGAGATGGACCATTATATCGCCGAGAAACATCTTAGAGA
gi|7 : TACAATAG---TATTACAGAT---ACTCCAAGAAACATCTTTTGACGGGAACC----TCCATA--TC----------------TTAGC--TAAAA-ATCGCCTTCAAGAATCATTTTTAGTCA-------TCTTTA----AA-CAACTTAT------CTACTA-GAATCTTCCTAGAATTTTCATTGTCGGGCTACTCGCCTGTTTGACAGCTTCGGTCTCAAATCGCTTTAACGCAATGCTTCAAGCTCAGCGAGTTGAGATTAACCCAGTCAACAGCAACTTTAAACTCGAC--AAAAAGATCTTGACAACT---GGATCAAGCATGGAAGATGGAACATCATATCGCCAAG
gi|8 : gACAAGAATCAGCATGCTTCAATAG---CACTACAGCT---ACTCCAAGAAACATCTTTTGACGGGAATC----TCCATA--TCCACAGAA---T-CAACTTA-------------GTCTTCAAGAATCCTC---------------T-TTTA----AA-CAACTTAT------CTAATA-GAATCTT-CTAGAATCTTCATCGTTGGGCTACTCGTCTGTTTGACAGCTTCGGTCTCAAATCGCTTTAATGTAATGCATCAAGCTCAGCGGGTTGAGATTGACCCAGTCAACAGCAACTTTAAACTCGAC-AA-------C------------------AGCATGGAAGATGGAACATCATATCGCC
gi|9 : tttATAATCAACAACAATCAGCATGCTGCTACAG---TAATAAAACTACGTCTCCAAGAATCATCTTTCAACGGGAACC----ACCATA--TCAACATAA---T-TAACATAACA-ACATA-ATCGTCTTCAAGAAACTTCTTCAATCG-------T-AGT-----AA-CATCATAC------CTACAA-GAATCTTCCTATGATGTAC
blockSeqs : T T GGT ACG GGCT AA A CTG A G T T ACAACAGCTCTACAAGAAT A CTACAA T C T AA TGAT A
blockSeqs : A T . . . . A . . G . . TCTTTAAAT A CTACAA . T A A TGAT C
blockSeqs : T T . . . . T . . G . . TCTTTAAA A . . T A A G A
blockSeqs : T T . . . . T . . T . . TCTTTAAA A . . G A A T C
blockSeqs : T A . . . . T . . T . . TCTTTAAA A . . G T . G C
blockSeqs : A A . . . . A . . T . . TCTTTAAA A . . G T . G T
blockSeqs : T T . . . . C . . G . . ATTTAAA G . . G A . T C
blockSeqs : C T . . . . T . . G . . CTTTAAA A . . T T . G T
blockSeqs : T T . . . . T . . T . . TTTTAAA A . . C A . T
blockSeqs : C T . . . . T . . G . . TAGTAA T . . G
blockSeqs : C A . . . . A . . G . . T . . .
blockSeqs : T A . . . . C . . G . . T . .
blockSeqs : T T . . . . A . . A . . T . .
blockSeqs : . . . . . . . . . . . T . .
blockSeqs : . . . . . . .
blockSeqCons : A*
originalCons : NAATAATCAACAAGAATCAGCACGCTACTACAG---TAATACAACT---TCTCCAAGAAACATCTTTTGACGGGAACC----TCCATA--TCNACATAA---T-CAACTTAGCA-CAAGA-ATCGTCTTCAAGAATCATCTTTAATCA-------T-TTTA----AA-CAACTTAT------CTACAA-GAATCTTCCTAGAATGTACATCGTCGGGCTACTCGTCTGTTTGACAGCTTCGGTCTCAAATCGCTTTAACGCAATGCATCAAGCTCAGCGGGTTGAAATTGACCCAGTCAGCGGCAACTTTAAACTCGAC-AAAAAAGATCTTAACAACT---TGATCAAGCACGGAAGATGGAACATCATATCGCCGAGAAACATCTTAGAGA
finalCons : NAATAATCAACAAGAATCAGCACGCTACTACAG---TAATACAACT---TCTCCAAGAAACATCTTTTGACGGGAACC----TCCATA--TCNACATAA---T-CAACTTAGCA-CAAGA-ATCGTCTTCAAGAATCATCTTTAATCA-------T-TTTA----AA-CAACTTAT------CTACAA-GAATCTTCCTAGAATGTACATCGTCGGGCTACTCGTCTGTTTGACAGCTTCGGTCTCAAATCGCTTTAACGCAATGCATCAAGCTCAGCGGGTTGAAATTGACCCAGTCAGCGGCAACTTTAAACTCGACA-AAAAAGATCTTAACAACT---TGATCAAGCACGGAAGATGGAACATCATATCGCCGAGAAACATCTTAGAGA
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|17 ): TAATTGGTTTTATGTTTTTTAAAGTGGCGTTAGAAAGGGTCATTTTGACAACCAACAAGAATTGGCATGACTCAAAATCAACCTTCT
Alignments
lowQualScore : 22222222222222222222 111111 22 1111
lowQualScore : 3 1 444 0 444 5555 33 4 444 2 1 2 0 2 77777777777777777777 6 0 555555 0 3 1 1 11 7777 1
lowQualScore : . . ... . ... .... .. . ... . . . . . .................... . . ...... . . . . .. .... .
lowQualScore : 9 2 777 2 777 3333 44 3 444 5 1 5 2 5 33333333333333333333 8 9 333333 3 3 4 4 77 0000 4
consensus : NAATAATCAACAAGAATCAGCACGCTACTACAG---TAATACAACT---TCTCCAAGAAACATCTTTTGACGGGAACC----TCCATA--TCNACATAA---T-CAACTTAGCA-CAAGA-ATCGTCTTCAAGAATCATCTTTAATCA-------T-TTTA----AA-CAACTTAT------CTACAA-GAATCTTCCTAGAATGTACATCGTCGGGCTACTCGTCTGTTTGACAGCTTCGGTCTCAAATCGCTTTAACGCAATGCATCAAGCTCAGCGGGTTGAAATTGACCCAGTCAGCGGCAACTTTAAACTCGAC-AAAAAAGATCTTAACAACT---TGATCAAGCACGGAAGATGGAACATCATATCGCCGAGAAACATCTTAGAGA
Reference ( family-3399 ) : NAATAATCAACAAGAATCAGCACGCTACTACAG---TAATACAACT---TCTCCAAGAAACATCTTTTGACGGGAACC----TCCATA--TCNACATAA---T-CAACTTAGCA-CAAGA-ATCGTCTTCAAGAATCATCTTTAATCA-------T-TTTA----AA-CAACTTAT------CTACAA-GAATCTTCCTAGAATGTACATCGTCGGGCTACTCGTCTGTTTGACAGCTTCGGTCTCAAATCGCTTTAACGCAATGCATCAAGCTCAGCGGGTTGAAATTGACCCAGTCAGCGGCAACTTTAAACTCGAC-AAAAAAGATCTTAACAACT---TGATCAAGCACGGAAGATGGAACATCATATCGCCGAGAAACATCTTAGAGA
gi|1 : AATAATCAACAAGAATCAGCATGCTACTACAG---CAATACAACT---TCTCCAAGAAACAGCTTTTGACCGGAACC----TCCATA--TCTGCATAA---T-CAACTTAGCA-CAAGA-ATCGTCTTCAAGAATCATCTTTAACCA-------TATTTA----AA-CAACTTAT------CTACAA-GAATCTTCCTAGAATGTACATCGTCGGGCTACTCGTCTGCCTGACAGCTTCGGTTTCAAATCGCTTTAACGCAATGCATCAAGCTCAGCGGGTTAAAATTGACCCAGTCAGTGGCAACTTTAAACTCGGCAAAAAAAGATCTTGAAAACT---TGATCAAGCATGGAAGATGGAGCATCATATTGCCGAGAAACATCTTAGAGA
gi|10 : gTAATCAACAAGAATCAGCATGCTAC---AA---TAGTACA------TCTCCAAGAAACATCTTTTGACGGGAACC----TCCATA--TCAACAGAA---T-CAACTTAGCT-AAAAA-ATGGACTTCAAGAATCATCTTTAGTCT-------TCTTTA----AATCAACTTAT------CTACTA-GAATCTTCC-AGAATCTTCATCGTCGGGCTACTCGTCTGTTTGACAGCTTAGGTCTCAAATCGCTTTAACGCAATGCTTGAAGCTCAGCGGGTTGAGATCGACCCAGTCAACAGCAACCTTA
gi|11 : AATC----TCCAAAAATTAGCATGC---TACAA--TAGCA-CTACA-GCTA-CTCCAAGAAACATCTTT--TGA-------A-TTTA----AA-CAACTTAT------CTACTA-GAATCTTCCTAGAATTTACATCGTCGGGCTACTCGTCTGTTTGACAGCTTCGGTCTCAAATCGCTTTAACGCAATGCATCAAGCTCAGCGGGTTGAAATTGACCCAGTCAACAGCAACTTTAAACTCGAC--AAAAATATCTTAACAACT---GGATCAAGCAAGGAAGATGGA
gi|12 : atAATCAGCAAGAAACAGCAAGCTTCTCCAGGGTTAAT-CTACA---TCTTCAAGAATCATTTTTCTACGGAAACTGGCTTTCATA--T----GTAA---C-C---TTTGTATCAACATAT--TCATCAAGAATCACCAATAATCAACAACAGC-TCTACAAGAATCAACATAT------CTAC
gi|13 : catcgtttttgtttttaacgaggcattagataggggttttttttaaTAATAAACAAGAATCAGCATGCTACTGCAG---TAAAACAACT---TCTCCAAGAAACATCTTTTGACAGGAACC----TCCATA--TCTACATAA---T-CAACTTATCA-CAAGA-CTCGTCTTCAAGAATCATCTTTAATCA-------T------------CA---TAT------CTACA
gi|14 : tcatcgattttatgtttttaacgtggtgttaaaaatggtcgctttgggTAATAAACAAGAATCAGCATGCTACTGCAG---TAAAACAACT---TCTCCAAGAAACATCTTTTGACAGGAACC----TCCATA--TCTACATAA---T-CAACTTATCA-CAAGA-CTCGTCTTCAAGAATCATCTTTAATCA-------T------------CA---TAT------CTACAgt
gi|15 : tcatcgattttatgtttttaacgtggtgttaaaaatggtcgctttgggTAATAAACAAGAATCAGCATGCTACTGCAG---TAAAACAACT---TCTCCAAGAAACATCTTTTGACAGGAACC----TCCATA--TCTACATAA---T-CAACTTATCA-CAAGA-CTCGTCTTCAAGAATCATCTTTAATCA-------T-gt
gi|16 : tcatcgattttatgtttttaacgtggtgttaaaaatggtcgctttgggAAGCAACAAGAATTGGCAAGCCTCAACAG---TA------------CTTTAAGAATCATCTTTCGACGGGAACA----TTCTTA--TCAACAAAACTGT-CAACcatat
gi|18 : AAAAAGATCTTAACAACT---TGATCAAGCACGGAAGAAGGAATATCATACCGCCGAGAAACATCTTAGAGAatgtcaacttatc
gi|19 : CA-CAAGA-CTCGTCTTCAAGAATCATCTTTAATCA-------T------------CA---TAT------CTACAGTGAACC
gi|2 : AATAATCTACAAGAATCAGCATGCTACAATAG---TACTACAGCT---ACTCCAAGAAACATCTTTTGACGGGAACC----TCCATA--TCCACAGAA---T-CAACTAAGTT-CAAAA-ATCGTCTTCAAGAATCATCTTTAGTCA-------TCTTTA----AA-CAACTTAT------CTACTA-GAATCTTCCTAGAATTTACATCGTCGGGCTACTCGTCTGTTTGACAGCTTCGGTCTCAAATCGCTTTAACGCAATGCAACAAGCTCAGCGGGATGAAATTGACCCAGTCAACAGCAACTTTAAACTCGAC--AAAAAGATCTTAACAACT---GGATAAAGCAAGGAAGATGTAACATCATATCGCCAAGAACCAGTCTAGAGAc
gi|3 : ATAATCAACAAGAATCAGCACACTACTACAG---CAATACAACT---TCTCCAAGAAACAGCTTTTGACTGGAACC----TCCATA--TTTGCATAA---T-CAACTTAGCA-CAAGA-ATCGTCTCCAAGAATCA---------A-------C-TTTA----AA-CAACTTATCTACAACTACAA-TAATCTTCCTAGAATGTACATCGTCGGGCTACTCTTA---TTGACAGCTTCGGTTTCAAATCGCTTATACGCAAGGCATCAAGCTCAGCGGGTTAAAATTGACTCGGTCAGTGGAAATTTTAAACTCGACAAAAAAAGATCTTAACAACTTGATGATCAAATACGGAGGATGGAACATCAAACCACCGAGAAACATCTTAGAAA
gi|4 : gATAATCAACAAGAATCAGCATGCTTCTACAG---TTATACAACT---TCTCCAAGAAACATCTTTTGACGGGAACC----ACCATA--TCTACATCA---T-CAACTTATCA-CGAGA-ATCATCTTCAAGAAACAACTTTAATCA-------T------------CA---TAT------CTACAA-GAATCTTCCTAGGATGTGCATCGTTGGGCTACTCGTCTGTTTGATCGCTTCGGTTTCAAATCCATTTAACGCAATGCTTCAAACTCAACAGGTTGAAATTGACCCAGTCAGCAGCAACTTCAAGCTCGAC-AAAAAAGATCTCAACAAAT---GAATCAAGCACGGAAGATGGAGCATCATATCGCCGAGAAACAGCGTAGAAA
gi|5 : gAATAATCAACAAGAATCAGCACGCTATTAC------AATACAACT---TCTCCAAGAAACAGCTT-------------------ATA--TCTGCATAA---T-CAACTTTGCA-CAAGA-ATCGTCTTCAAGAACCATCTTTAATCA-------TCTTTA----AA-CAACTTATCTACAACTACAA-GAATCTTCCTAGAATGGACATCATCGGGCTAC---TCTGATTGACAGCTTCGGTTTCAAATCGCTTATACGCAAGGCTTCAAGCTCAGCAGGTTGAAATTGACTCAGTCAGCGGAAATTTTAAACTCGAC-AAAAAAGATCTTAACAACTTGATGATCAAATATGGAAGAAGGAACATTATACCACAGAGAAACATCTTAGAAA
gi|6 : ATATTCAACAAGAATCAGCACGCTACTACAG---CAATACAACT---TCTCCAAGAA-------------GGAACC----TCCATA--TCAACATAA---T-CAACTTAGCA-CAAAA-ATCGTCTTCAATAATCATCTTTAATCA-------TCTTTA----AA-CAGCTTAT------CTACAA-GAATCTTCCTAGGATGTACATCGTCGGGCTACTCGTCTGTTTGACAGCTTCGGTTTTAAATCGCTTTAACGCAATACATCGAGCTCAGCGGGTTGAAATTGACCCAGTCAGCGGCAACTTTAAACTCGGC--AAAAAGATCCTAACAACT---TGATCAAGCACGGGAGATGGACCATTATATCGCCGAGAAACATCTTAGAGA
gi|7 : TACAATAG---TATTACAGAT---ACTCCAAGAAACATCTTTTGACGGGAACC----TCCATA--TC----------------TTAGC--TAAAA-ATCGCCTTCAAGAATCATTTTTAGTCA-------TCTTTA----AA-CAACTTAT------CTACTA-GAATCTTCCTAGAATTTTCATTGTCGGGCTACTCGCCTGTTTGACAGCTTCGGTCTCAAATCGCTTTAACGCAATGCTTCAAGCTCAGCGAGTTGAGATTAACCCAGTCAACAGCAACTTTAAACTCGAC--AAAAAGATCTTGACAACT---GGATCAAGCATGGAAGATGGAACATCATATCGCCAAG
gi|8 : gACAAGAATCAGCATGCTTCAATAG---CACTACAGCT---ACTCCAAGAAACATCTTTTGACGGGAATC----TCCATA--TCCACAGAA---T-CAACTTA-------------GTCTTCAAGAATCCTC---------------T-TTTA----AA-CAACTTAT------CTAATA-GAATCTT-CTAGAATCTTCATCGTTGGGCTACTCGTCTGTTTGACAGCTTCGGTCTCAAATCGCTTTAATGTAATGCATCAAGCTCAGCGGGTTGAGATTGACCCAGTCAACAGCAACTTTAAACTCGAC-AA-------C------------------AGCATGGAAGATGGAACATCATATCGCC
gi|9 : tttATAATCAACAACAATCAGCATGCTGCTACAG---TAATAAAACTACGTCTCCAAGAATCATCTTTCAACGGGAACC----ACCATA--TCAACATAA---T-TAACATAACA-ACATA-ATCGTCTTCAAGAAACTTCTTCAATCG-------T-AGT-----AA-CATCATAC------CTACAA-GAATCTTCCTATGATGTAC
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|17 ): TAATTGGTTTTATGTTTTTTAAAGTGGCGTTAGAAAGGGTCATTTTGACAACCAACAAGAATTGGCATGACTCAAAATCAACCTTCT