lowQualScore : 1 1 3333333 1 11 1111111111111 22222222
lowQualScore : 5 1 2 33 333 777 5555555 2 1 333 1 1 22 5555555 1111111111111 8 77777 0 11111111
lowQualScore : . . . .. ... ... ....... . . ... . . .. ....... ............. . ..... . ........
lowQualScore : 0 2 9 77 777 888 2222222 2 8 222 9 7 77 4444444 9999999999999 5 44444 5 00000000
consensus : TTGGAGAAGAACTCTATAAGA-AT--TGT-ATT---CTT-C---GTTCTAA-TCC-TTTA--CATTTT-GT-ATATTGTACTTGTTTA-------TCT------G---T--AAANA-----CTGAAAATAAAATA-T------GTTTAAACCA
Reference ( gi|2 ) : TTGGAGAATAACTCTATTAGA-AT--TAT-ATT---C---C---GTTCTAA-TCC-TTTA--CAATTT-GC-ATATTGTACTTGTTTA-------TCT------G---T--AAACA-----CTGAAAATAAAATA-G------GTTTAAACCA
gi|19 : TTGGAGAAGAACTTTACAAGA-AT--TAA-ATTTT-C---T---GTTCCAA-TTG-TTTA--TA---------TATTGTACTTTTTTA-------TCT------G---
gi|1 : atAAGAACTCTATAAGA-AT--TGC-ATT---CTTCC---ATTCTAG-GTC-TTTA--CATTTT-AT-ATATTGTACTTGTTTA-------TCTAAAGAAA---A--AAACA-----ACAACAGGAAAATA-T------GTTTAAACCAata
gi|5 : AACTTTATACGA-ATGTTATTCTT---C---C---GTTCTGA-ACC-TAAA--CACTTT-GT-AAACTATACTTATTTA-------TCT------GA--T--AGA-A-----CTGAAAATAAAATA-T------GTTTAAAC
gi|3 : ACTCTTTAAGA-TT--TAC-ATT---CTTAC---GTTCTTA-TCC-TTTA--CATTTC-GT-TTACTGTACTAAGTTA-------TAA------G---A--TAACA-----CCGAAAATAAAATA-t
gi|6 : aaaaggCTCTGTAAGA-AT--TG------------C---ATTCTAA-TCT-TTTTTTCATTTTTGT-ATATTGTACTTGTTTA-------TCT------GAAAA--AAAAA-----CTGAAAATAAAATA-T------GTTAAAACCttctttaaa
gi|10 : tCTATAAGA-AA--TGT-ATT---C-------GTTCTTA-TCC-TTTA--ACATTT-AT-ATATCG-ACTTGTTTA-------TCT------G---A--AAAAAAAA--CTGAAAATAAAATA-T------GTTCAAACCA
gi|7 : TATAAGA-GT--TGT-ATT---CTTTC---GTACTAA-TCC-TTTA--TAATTT-GA-ATACTGTACTTGTTTA-------TCT------G---T--AAACA-----CTGGAAATATAACA-T------CTTTAAAa
gi|18 : ttaTTAAATAT--TGT-ATT---CTTTC---GTTCAAA-TCC-TTTA-----TTC-GT--TATT----CTGTGTA--------CA------G---C--AAGTA-----CAGAAAATAAAATA-T------GTTTA
gi|9 : TAAA-AT--TGT-ATT---C---TTCTGTTCTAA-TCCATTTT--CATTTT-GT-ATATTTTACTTGTTTA-------TTT----------T--AAAAAAAAGACTGAAAATAAAATA-T------ATTTAAA
gi|11 : AAA-GT--TGT-ATT---CTTTC---GTTCTAA-TCC-TTCA--TATTTC-AT-ATATTGAACTTGTTTA-------TCT------T---T--AAATA-----CTGGAAATAAAATA-T------GTTTATACCa
gi|13 : gAGA-AT--TGT-ATT---CTTTC---TTTCTAA-CCT-TTTA--TATTCT-GA-ATATTGAACTTGTTTA-------TCT------G---T--AAATA-----CTGGAAATAAAGTA-T------ATTTTAA
gi|8 : taGA-AT--TGT-ATT---CTTGC---GTTCTAA-TCA-TTTA--TGTTTT-GA-ATATTGTACTTGTTTATCTTGTTTCT------G---T--AAATA-----ATGGAAATAAACT---------GTTTAAAC
gi|12 : cGA-TT--TGT-ATT---C---T----TTCTAA-TTC-GTTA--TGTTTT-GA-ATATTGTACTTGTTTA-------TCA------G---T--AAATA-----CTTGAACTGAAATA-T------GTTTAAAa
gi|14 : actttctA-AT--TGT-ATTTTCC---C---GTTCTAA-TCC-TTTA--CAATTT-GT-ATATTGTAATTGTTTA-------TCA------G---A--TATTA-----CTGATAATAAAATA-A------GTTTAAACC
gi|16 : ttT--TGT-ATT---C--------TTTTGT-TCA-TTTA--CATTTT-GT-ATACTATACTAGTTTA-------TCT------G---A--TAATA-----CTGAAAATAAAATA-T------GTTTAAACC
gi|17 : T---C---T---GTTCTAAACCC-TTTT--CAATTT-TTTATATTGTACTTGTTTA-------TCT------GAA-A--AAAGA-----AAGAAAATAGAATA-T------ATTTAAA
gi|15 : cTTCTAA-TCC-TTTA--CACTTT-GT-ATACTTTACCTGTTTA-------TCT------G---A--CAATA-----TTGAAAATAAAATA-T------GTATGAACCAa
gi|22 : tctataataaA-TCC-TTCA--TGATTT-G--A-ACTGTACTTGTTTA-------TCT------G---T--AAATA-----CTGGAAATTAAAT---------GTTTTAACTA
gi|24 : CT-TTTT--CATTTT-GT-ATATTGTACTTATTTA-------TCTA-----A---T--AAAAA-----ATAAAAATAAAATA-T------GTTTAAAa
gi|25 : -TTTA--TATTTT-GA-TTATTGTACTTGCTTA-------TCT------G---T--AAATA-----CTGGAAATGAAATA-T------GTTTAAACC
gi|20 : -TTTA--TATTTT-GA-ATATTTTACTTGTTTA-------TCT------G---T--AAAAA-----CTG-GAATGAAATATG------CTTTAAACCA
gi|21 : tttt-TTTA--TATTTT-GA-ATATTTTACTTGTTTA-------TCT------G---T--AAAAA-----CTG-GAATGAAATATG------CTTTAAACC
gi|26 : ttttT-GA-ATACTGAA--TGTTTT-------TCT------G---T--AAATA-----CTGGAAATAAAATA-T------GTTTAAA
gi|23 : tgatgttgTGTACTTGTTTA-------TCT------G---GGGAAAAA-----CTGAAAATAAAATA-CATTTATGTTTAAACCA
1 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|4 ): AAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
Alignments
lowQualScore : 222 111111
lowQualScore : 222 2 1 444 1 1 333 5555555 444 000000 2 77777 0 222 444444 1 3
lowQualScore : ... . . ... . . ... ....... ... ...... . ..... . ... ...... . .
lowQualScore : 888 1 7 777 7 7 555 2222222 444 222222 6 11111 1 999 888888 7 3
consensus : TTGGAGAAGAACTCTATAAGAATTGTATTCTT-C-GTTCTAA-TCC-TTTA--CA-TTTT-GT--ATATTGTACTTGTTTA-------TCT---G---T--AAANA-----CTGAAAAT---AAAA------TA-TG-TTTAAACCA
Reference ( family-3398 ) : TTGGAGAAGAACTCTATAAGAATTGTATTCTT-C-GTTCTAA-TCC-TTTA--CA-TTTT-GT--ATATTGTACTTGTTTA-------TCT---G---T--AAANA-----CTGAAAAT---AAAA------TA-TG-TTTAAACCA
gi|1 : AAGAACTCTATAAGAATTGCATTCTT-CCATTCTAG-GTC-TTTA--CA-TTTT-AT--ATATTGTACTTGTTTA-------TCTAAAG---A--AAAAA-----ACAACAACAGGAAAA------TA-TG-TTTAAACCA
gi|10 : CTATAAGAAATGTATTC-----GTTCTTA-TCC-TTTAA-CA-TTT--AT--ATATCG-ACTTGTTTA-------TCT---G---A--AAAAAAAA--CTGAAAAT---AAAA------TA-TG-TTCAAACCA
gi|11 : AAAGTTGTATTCTTTC-GTTCTAA-TCC-TTCA--TA-TTTC-AT--ATATTGAACTTGTTTA-------TCT---T---T--AAATA-----CTGGAAAT---AAAA------TA-TG-TTTATACCa
gi|12 : gGATTTGTATTCTT-----TCTAA-TTC-GTTA--TG-TTTT-GA--ATATTGTACTTGTTTA-------TCA---G---T--AAATA-----CTTGAACT---GAAA------TA-TG-TTTAAA
gi|13 : actttctTAAGAATTGTATTCTTTC-TTTCTAA-CCT-TTTA--TA-TTCT-GA--ATATTGAACTTGTTTA-------TCT---G---T--AAATA-----CTGGAAAT---AAAG------TA-TA-TTTTAA
gi|14 : AATTGTATTTTC-CCGTTCTAA-TCC-TTTA--CA-ATTT-GT--ATATTGTAATTGTTTA-------TCA---G---A--TATTA-----CTGATAAT---AAAA------TA-AG-TTTAAACC
gi|15 : ttTTCTAA-TCC-TTTA--CA-CTTT-GT--ATACTTTACCTGTTTA-------TCT---G---A--CAATA-----TTGAAAAT---AAAA------TA-TG-TATGAACCA
gi|16 : tctataataaTTGTATTCTT----TTGT---TCA-TTTA--CA-TTTT-GT--ATACTATACTAGTTTA-------TCT---G---A--TAATA-----CTGAAAAT---AAAA------TA-TG-TTTAAACC
gi|17 : CTC-T-GTTCTAAACCC-TTTT--CAATTTT-TT--ATATTGTACTTGTTTA-------TCT---GAA-A--AAAGA-----AAGAAAAT---AGAA------TA-TA-TTTAAA
gi|18 : TAAATATTGTATTCTTTC-GTTCAAA-TCC-TTTA------TTC-GT---TATT----CTGTGTA--------CA---G---C--AAGTA-----CAGAAAAT---AAAA------TA-TG-TTTAa
gi|19 : tTTGGAGAAGAACTTTACAAGAATTAAATTTTC-T-GTTCCAA-TTG-TTTA-----------T--ATATTGTACTTTTTTA-------TCT---G---
gi|2 : atTTGGAGAATAACTCTATTAGAATTATATTC---C-GTTCTAA-TCC-TTTA--CA-ATTT-GC--ATATTGTACTTGTTTA-------TCT---G---T--AAACA-----CTGAAAAT---AAAA------TA-GG-TTTAAACCAata
gi|20 : -TTTA--TA-TTTT-GA--ATATTTTACTTGTTTA-------TCT---G---T--AAAAA-----CTG-GAAT---GAAA------TA-TGCTTTAAACCA
gi|21 : tttt-TTTA--TA-TTTT-GA--ATATTTTACTTGTTTA-------TCT---G---T--AAAAA-----CTG-GAAT---GAAA------TA-TGCTTTAAACC
gi|22 : ttttA-TCC-TTCA--TG-ATTT-G---A-ACTGTACTTGTTTA-------TCT---G---T--AAATA-----CTGGAAAT---TAAA------TG-T--TTTAA
gi|23 : TGTACTTGTTTA-------TCT---G---GGGAAAAA-----CTGAAAAT---AAAATACATTTA-TG-TTTAAACCActaa
gi|24 : ttatagaCT-TTTT--CA-TTTT-GT--ATATTGTACTTATTTA-------TCTA--A---T--AAAAA-----ATAAAAAT---AAAA------TA-TG-TTTAAAaa
gi|25 : -TTTA--TA-TTTT-GA--TTATTGTACTTGCTTA-------TCT---G---T--AAATA-----CTGGAAAT---GAAA------TA-TG-TTTAAACC
gi|26 : A-TGTT-GTGAATACTGAA--TGTTTT-------TCT---G---T--AAATA-----CTGGAAAT---AAAA------TA-TG-TTTAAA
gi|3 : tgAAAAGGACTCTTTAAGATTTACATTCTTAC-GTTCTTA-TCC-TTTA--CA-TTTC-GT--TTACTGTACTAAGTTA-------TAA---G---A--TAACA-----CCGAAAAT---AAAA------TATTC-TTTAAA
gi|5 : AACTTTATACGAATGTTATTCTT-CCGTTCTGA-ACC-TAAA--CA-CTTT-GT--AAACTATACTTATTTA-------TCT---GA--T--AGA-A-----CTGAAAAT---AAAA------TA-TG-TTTAAAC
gi|6 : CTCTGTAAGAATTG--------C-ATTCTAA-TCT-TTTTTTCA-TTTTTGT--ATATTGTACTTGTTTA-------TCT---GAAAA--AAAAA-----CTGAAAAT---AAAA------TA-TG-TTAAAACCt
gi|7 : tTATAAGAGTTGTATTCTTTC-GTACTAA-TCC-TTTA--TA-ATTT-GA--ATACTGTACTTGTTTA-------TCT---G---T--AAACA-----CTGGAAAT---ATAA------CA-TC-TTTAAA
gi|8 : ttaGAATTGTATTCTTGC-GTTCTAA-TCA-TTTA--TG-TTTT-GA--ATATTGTACTTGTTTATCTTGTTTCT---G---T--AAATA-----ATGGAAAT---AAA--------C-TG-TTTAAAC
gi|9 : cAAAATTGTATTCTT-CTGTTCTAA-TCCATTTT--CA-TTTT-GT--ATATTTTACTTGTTTA-------TTT-------T--AAAAAAAAGACTGAAAAT---AAAA------TA-TA-TTTAAAa
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|4 ): AAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
Alignments
lowQualScore : 222 111111
lowQualScore : 222 2 1 444 1 1 333 5555555 444 000000 2 77777 0 222 444444 1 3
lowQualScore : ... . . ... . . ... ....... ... ...... . ..... . ... ...... . .
lowQualScore : 888 1 7 777 7 7 555 2222222 444 222222 6 11111 1 999 888888 7 3
consensus : TTGGAGAAGAACTCTATAAGAATTGTATTCTT-C-GTTCTAA-TCC-TTTA--CA-TTTT-GT--ATATTGTACTTGTTTA-------TCT---G---T--AAANA-----CTGAAAAT---AAAA------TA-TG-TTTAAACCA
Reference ( family-3398 ) : TTGGAGAAGAACTCTATAAGAATTGTATTCTT-C-GTTCTAA-TCC-TTTA--CA-TTTT-GT--ATATTGTACTTGTTTA-------TCT---G---T--AAANA-----CTGAAAAT---AAAA------TA-TG-TTTAAACCA
gi|1 : AAGAACTCTATAAGAATTGCATTCTT-CCATTCTAG-GTC-TTTA--CA-TTTT-AT--ATATTGTACTTGTTTA-------TCTAAAG---A--AAAAA-----ACAACAACAGGAAAA------TA-TG-TTTAAACCA
gi|10 : CTATAAGAAATGTATTC-----GTTCTTA-TCC-TTTAA-CA-TTT--AT--ATATCG-ACTTGTTTA-------TCT---G---A--AAAAAAAA--CTGAAAAT---AAAA------TA-TG-TTCAAACCA
gi|11 : AAAGTTGTATTCTTTC-GTTCTAA-TCC-TTCA--TA-TTTC-AT--ATATTGAACTTGTTTA-------TCT---T---T--AAATA-----CTGGAAAT---AAAA------TA-TG-TTTATACCa
gi|12 : gGATTTGTATTCTT-----TCTAA-TTC-GTTA--TG-TTTT-GA--ATATTGTACTTGTTTA-------TCA---G---T--AAATA-----CTTGAACT---GAAA------TA-TG-TTTAAA
gi|13 : actttctTAAGAATTGTATTCTTTC-TTTCTAA-CCT-TTTA--TA-TTCT-GA--ATATTGAACTTGTTTA-------TCT---G---T--AAATA-----CTGGAAAT---AAAG------TA-TA-TTTTAA
gi|14 : AATTGTATTTTC-CCGTTCTAA-TCC-TTTA--CA-ATTT-GT--ATATTGTAATTGTTTA-------TCA---G---A--TATTA-----CTGATAAT---AAAA------TA-AG-TTTAAACC
gi|15 : ttTTCTAA-TCC-TTTA--CA-CTTT-GT--ATACTTTACCTGTTTA-------TCT---G---A--CAATA-----TTGAAAAT---AAAA------TA-TG-TATGAACCA
gi|16 : tctataataaTTGTATTCTT----TTGT---TCA-TTTA--CA-TTTT-GT--ATACTATACTAGTTTA-------TCT---G---A--TAATA-----CTGAAAAT---AAAA------TA-TG-TTTAAACC
gi|17 : CTC-T-GTTCTAAACCC-TTTT--CAATTTT-TT--ATATTGTACTTGTTTA-------TCT---GAA-A--AAAGA-----AAGAAAAT---AGAA------TA-TA-TTTAAA
gi|18 : TAAATATTGTATTCTTTC-GTTCAAA-TCC-TTTA------TTC-GT---TATT----CTGTGTA--------CA---G---C--AAGTA-----CAGAAAAT---AAAA------TA-TG-TTTAa
gi|19 : tTTGGAGAAGAACTTTACAAGAATTAAATTTTC-T-GTTCCAA-TTG-TTTA-----------T--ATATTGTACTTTTTTA-------TCT---G---
gi|2 : atTTGGAGAATAACTCTATTAGAATTATATTC---C-GTTCTAA-TCC-TTTA--CA-ATTT-GC--ATATTGTACTTGTTTA-------TCT---G---T--AAACA-----CTGAAAAT---AAAA------TA-GG-TTTAAACCAata
gi|20 : -TTTA--TA-TTTT-GA--ATATTTTACTTGTTTA-------TCT---G---T--AAAAA-----CTG-GAAT---GAAA------TA-TGCTTTAAACCA
gi|21 : tttt-TTTA--TA-TTTT-GA--ATATTTTACTTGTTTA-------TCT---G---T--AAAAA-----CTG-GAAT---GAAA------TA-TGCTTTAAACC
gi|22 : ttttA-TCC-TTCA--TG-ATTT-G---A-ACTGTACTTGTTTA-------TCT---G---T--AAATA-----CTGGAAAT---TAAA------TG-T--TTTAA
gi|23 : TGTACTTGTTTA-------TCT---G---GGGAAAAA-----CTGAAAAT---AAAATACATTTA-TG-TTTAAACCActaa
gi|24 : ttatagaCT-TTTT--CA-TTTT-GT--ATATTGTACTTATTTA-------TCTA--A---T--AAAAA-----ATAAAAAT---AAAA------TA-TG-TTTAAAaa
gi|25 : -TTTA--TA-TTTT-GA--TTATTGTACTTGCTTA-------TCT---G---T--AAATA-----CTGGAAAT---GAAA------TA-TG-TTTAAACC
gi|26 : A-TGTT-GTGAATACTGAA--TGTTTT-------TCT---G---T--AAATA-----CTGGAAAT---AAAA------TA-TG-TTTAAA
gi|3 : tgAAAAGGACTCTTTAAGATTTACATTCTTAC-GTTCTTA-TCC-TTTA--CA-TTTC-GT--TTACTGTACTAAGTTA-------TAA---G---A--TAACA-----CCGAAAAT---AAAA------TATTC-TTTAAA
gi|5 : AACTTTATACGAATGTTATTCTT-CCGTTCTGA-ACC-TAAA--CA-CTTT-GT--AAACTATACTTATTTA-------TCT---GA--T--AGA-A-----CTGAAAAT---AAAA------TA-TG-TTTAAAC
gi|6 : CTCTGTAAGAATTG--------C-ATTCTAA-TCT-TTTTTTCA-TTTTTGT--ATATTGTACTTGTTTA-------TCT---GAAAA--AAAAA-----CTGAAAAT---AAAA------TA-TG-TTAAAACCt
gi|7 : tTATAAGAGTTGTATTCTTTC-GTACTAA-TCC-TTTA--TA-ATTT-GA--ATACTGTACTTGTTTA-------TCT---G---T--AAACA-----CTGGAAAT---ATAA------CA-TC-TTTAAA
gi|8 : ttaGAATTGTATTCTTGC-GTTCTAA-TCA-TTTA--TG-TTTT-GA--ATATTGTACTTGTTTATCTTGTTTCT---G---T--AAATA-----ATGGAAAT---AAA--------C-TG-TTTAAAC
gi|9 : cAAAATTGTATTCTT-CTGTTCTAA-TCCATTTT--CA-TTTT-GT--ATATTTTACTTGTTTA-------TTT-------T--AAAAAAAAGACTGAAAAT---AAAA------TA-TA-TTTAAAa
blockSeqs : TC A A TTC A T TGA TCTTGTT A AAAA A AAAGA . TACATT T C
blockSeqs : TC . . AC . . T . . AAA T AAA . . . C
blockSeqs : CC . . T . . T . . GGG T . . . . .
blockSeqs : TC . . T . . A . . AT T . . . . .
blockSeqs : AC . . T . . A . . A T . . . . .
blockSeqs : CC . . C . . T . . T T . . . . .
blockSeqs : TC . . C . . T . . T T . . . . .
blockSeqs : GC . . C . . T . . T G . . . . .
blockSeqs : CT . . C . . T . . A T . . . . .
blockSeqs : T . . C . . T . . A C . . . . .
blockSeqs : T . . T . . T . . A A . . . . .
blockSeqs : C . . T . . C . . C A . . . . .
blockSeqs : C . . T . . A . . T T . . . . .
blockSeqs : . . . C . . A . . T A . . . . .
blockSeqs : . . . T . . T . . T A . . . . .
blockSeqs : . . . C . . A . . T T . . . . .
blockSeqs : . . C . . T . . T T . . . . .
blockSeqs : . . T . . T . . T C . . . . .
blockSeqs : . T . . T . . T A . . . . .
blockSeqs : . C . . A . . A C . . . . .
blockSeqs : . . . . A . . T T . . . . .
blockSeqs : . . . . T . . T A . . . . .
blockSeqs : . . . . . T . . . . . .
blockSeqs : . .
blockSeqCons : *** ***
originalCons : TTGGAGAAGAACTCTATAAGAATTGTATTCTT-C-GTTCTAA-TCC-TTTA--CA-TTTT-GT--ATATTGTACTTGTTTA-------TCT---G---T--AAANA-----CTGAAAAT---AAAA------TA-TG-TTTAAACCA
finalCons : TTGGAGAAGAACTCTATAAGAATTGTATTCTT-C-GTTCTAA-TCC-TTTA--CA-TTTT-GT--ATATTGTACTTGTTTA-------TCT---G---T--AAANA-----CTGAAAAT---AAAA------TA-TG-TTTAAACCA
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|4 ): AAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
Alignments
lowQualScore : 222 111111
lowQualScore : 222 2 1 444 1 1 333 5555555 444 000000 2 77777 0 222 444444 1 3
lowQualScore : ... . . ... . . ... ....... ... ...... . ..... . ... ...... . .
lowQualScore : 888 1 7 777 7 7 555 2222222 444 222222 6 11111 1 999 888888 7 3
consensus : TTGGAGAAGAACTCTATAAGAATTGTATTCTT-C-GTTCTAA-TCC-TTTA--CA-TTTT-GT--ATATTGTACTTGTTTA-------TCT---G---T--AAANA-----CTGAAAAT---AAAA------TA-TG-TTTAAACCA
Reference ( family-3398 ) : TTGGAGAAGAACTCTATAAGAATTGTATTCTT-C-GTTCTAA-TCC-TTTA--CA-TTTT-GT--ATATTGTACTTGTTTA-------TCT---G---T--AAANA-----CTGAAAAT---AAAA------TA-TG-TTTAAACCA
gi|1 : AAGAACTCTATAAGAATTGCATTCTT-CCATTCTAG-GTC-TTTA--CA-TTTT-AT--ATATTGTACTTGTTTA-------TCTAAAG---A--AAAAA-----ACAACAACAGGAAAA------TA-TG-TTTAAACCA
gi|10 : CTATAAGAAATGTATTC-----GTTCTTA-TCC-TTTAA-CA-TTT--AT--ATATCG-ACTTGTTTA-------TCT---G---A--AAAAAAAA--CTGAAAAT---AAAA------TA-TG-TTCAAACCA
gi|11 : AAAGTTGTATTCTTTC-GTTCTAA-TCC-TTCA--TA-TTTC-AT--ATATTGAACTTGTTTA-------TCT---T---T--AAATA-----CTGGAAAT---AAAA------TA-TG-TTTATACCa
gi|12 : gGATTTGTATTCTT-----TCTAA-TTC-GTTA--TG-TTTT-GA--ATATTGTACTTGTTTA-------TCA---G---T--AAATA-----CTTGAACT---GAAA------TA-TG-TTTAAA
gi|13 : actttctTAAGAATTGTATTCTTTC-TTTCTAA-CCT-TTTA--TA-TTCT-GA--ATATTGAACTTGTTTA-------TCT---G---T--AAATA-----CTGGAAAT---AAAG------TA-TA-TTTTAA
gi|14 : AATTGTATTTTC-CCGTTCTAA-TCC-TTTA--CA-ATTT-GT--ATATTGTAATTGTTTA-------TCA---G---A--TATTA-----CTGATAAT---AAAA------TA-AG-TTTAAACC
gi|15 : ttTTCTAA-TCC-TTTA--CA-CTTT-GT--ATACTTTACCTGTTTA-------TCT---G---A--CAATA-----TTGAAAAT---AAAA------TA-TG-TATGAACCA
gi|16 : tctataataaTTGTATTCTT----TTGT---TCA-TTTA--CA-TTTT-GT--ATACTATACTAGTTTA-------TCT---G---A--TAATA-----CTGAAAAT---AAAA------TA-TG-TTTAAACC
gi|17 : CTC-T-GTTCTAAACCC-TTTT--CAATTTT-TT--ATATTGTACTTGTTTA-------TCT---GAA-A--AAAGA-----AAGAAAAT---AGAA------TA-TA-TTTAAA
gi|18 : TAAATATTGTATTCTTTC-GTTCAAA-TCC-TTTA------TTC-GT---TATT----CTGTGTA--------CA---G---C--AAGTA-----CAGAAAAT---AAAA------TA-TG-TTTAa
gi|19 : tTTGGAGAAGAACTTTACAAGAATTAAATTTTC-T-GTTCCAA-TTG-TTTA-----------T--ATATTGTACTTTTTTA-------TCT---G---
gi|2 : atTTGGAGAATAACTCTATTAGAATTATATTC---C-GTTCTAA-TCC-TTTA--CA-ATTT-GC--ATATTGTACTTGTTTA-------TCT---G---T--AAACA-----CTGAAAAT---AAAA------TA-GG-TTTAAACCAata
gi|20 : -TTTA--TA-TTTT-GA--ATATTTTACTTGTTTA-------TCT---G---T--AAAAA-----CTG-GAAT---GAAA------TA-TGCTTTAAACCA
gi|21 : tttt-TTTA--TA-TTTT-GA--ATATTTTACTTGTTTA-------TCT---G---T--AAAAA-----CTG-GAAT---GAAA------TA-TGCTTTAAACC
gi|22 : ttttA-TCC-TTCA--TG-ATTT-G---A-ACTGTACTTGTTTA-------TCT---G---T--AAATA-----CTGGAAAT---TAAA------TG-T--TTTAA
gi|23 : TGTACTTGTTTA-------TCT---G---GGGAAAAA-----CTGAAAAT---AAAATACATTTA-TG-TTTAAACCActaa
gi|24 : ttatagaCT-TTTT--CA-TTTT-GT--ATATTGTACTTATTTA-------TCTA--A---T--AAAAA-----ATAAAAAT---AAAA------TA-TG-TTTAAAaa
gi|25 : -TTTA--TA-TTTT-GA--TTATTGTACTTGCTTA-------TCT---G---T--AAATA-----CTGGAAAT---GAAA------TA-TG-TTTAAACC
gi|26 : A-TGTT-GTGAATACTGAA--TGTTTT-------TCT---G---T--AAATA-----CTGGAAAT---AAAA------TA-TG-TTTAAA
gi|3 : tgAAAAGGACTCTTTAAGATTTACATTCTTAC-GTTCTTA-TCC-TTTA--CA-TTTC-GT--TTACTGTACTAAGTTA-------TAA---G---A--TAACA-----CCGAAAAT---AAAA------TATTC-TTTAAA
gi|5 : AACTTTATACGAATGTTATTCTT-CCGTTCTGA-ACC-TAAA--CA-CTTT-GT--AAACTATACTTATTTA-------TCT---GA--T--AGA-A-----CTGAAAAT---AAAA------TA-TG-TTTAAAC
gi|6 : CTCTGTAAGAATTG--------C-ATTCTAA-TCT-TTTTTTCA-TTTTTGT--ATATTGTACTTGTTTA-------TCT---GAAAA--AAAAA-----CTGAAAAT---AAAA------TA-TG-TTAAAACCt
gi|7 : tTATAAGAGTTGTATTCTTTC-GTACTAA-TCC-TTTA--TA-ATTT-GA--ATACTGTACTTGTTTA-------TCT---G---T--AAACA-----CTGGAAAT---ATAA------CA-TC-TTTAAA
gi|8 : ttaGAATTGTATTCTTGC-GTTCTAA-TCA-TTTA--TG-TTTT-GA--ATATTGTACTTGTTTATCTTGTTTCT---G---T--AAATA-----ATGGAAAT---AAA--------C-TG-TTTAAAC
gi|9 : cAAAATTGTATTCTT-CTGTTCTAA-TCCATTTT--CA-TTTT-GT--ATATTTTACTTGTTTA-------TTT-------T--AAAAAAAAGACTGAAAAT---AAAA------TA-TA-TTTAAAa
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|4 ): AAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN