lowQualScore                  :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                222222222222222222222222222222222222222222222222222222222222222222222                                                                                                                                                   22222222222222222222222222222222222222222222222222222                                                                        
lowQualScore                  :                                                                                                                                                  33     1    3333333333           2    11  22222      11         555555555        999999999999999999999999999999999999999999999      11         1  2    22                    1        111           22        22222222     11   11   3333333333333    11      55555555555          11  11  555555555555      11  11             111                                   1                        1111111111                              1111111111                                       222222            1                                                                            11111               1                     111111                                                 1       111111     11111      11111   1111    1       111111111111111111111111111111111111111111111111111111111111111111111                                  3  1                           2222                    1                    1                                    66666666666666666666666666666666666666666666666666666        1                             1  222                  1         
lowQualScore                  :                                                                                                                                                  00  1  7    2222222222           1    33  22222      33   6 2   000000000        999999999999999999999999999999999999999999999 2 8  44  0      3  6    33            9  66   3     0  999           00        66666666     33   55   2222222222222    88  0   55555555555 6        33  88  111111111111      00  33        5    666  4 6   3             5555   444   2 55          99999999   1111111111         2 444      99999 2   3333333333      55     55555   2     2    444    555555            3     1     4  2  888888  5    5                     6  3  6          8      33333  4      4   5 7  4                  777777                      8888       5      5        3       111111     00000      00000   3333 4  2       444444444444444444444444444444444444444444444444444444444444444444444   3 2      1       66         8  0  5             6     6       8888           3        5        444444      2  7  7                  7     11    88888888888888888888888888888888888888888888888888888  8   6 3        7          6       6 5  333                  5         
lowQualScore                  :                                                                                                                                                  ..  .  .    ..........           .    ..  .....      ..   . .   .........        ............................................. . .  ..  .      .  .    ..            .  ..   .     .  ...           ..        ........     ..   ..   .............    ..  .   ........... .        ..  ..  ............      ..  ..        .    ...  . .   .             ....   ...   . ..          ........   ..........         . ...      ..... .   ..........      ..     .....   .     .    ...    ......            .     .     .  .  ......  .    .                     .  .  .          .      .....  .      .   . .  .                  ......                      ....       .      .        .       ......     .....      .....   .... .  .       .....................................................................   . .      .       ..         .  .  .             .     .       ....           .        .        ......      .  .  .                  .     ..    .....................................................  .   . .        .          .       . .  ...                  .         
lowQualScore                  :                                                                                                                                                  55  0  3    3333333333           2    88  55555      88   5 5   555555555        555555555555555555555555555555555555555555555 5 8  77  7      3  7    00            0  77   3     2  000           00        88888888     00   88   3333333333333    33  7   77777777777 0        88  88  888888888888      88  88        0    222  4 2   1             3333   444   1 99          11111111   7777777777         8 777      11111 7   3333333333      66     99999   5     2    111    000000            4     0     4  9  222222  5    5                     0  6  4          9      55555  0      0   0 7  0                  444444                      5555       5      5        6       555555     00000      00000   2222 0  5       666666666666666666666666666666666666666666666666666666666666666666666   0 8      4       44         2  0  0             0     0       3333           2        0        000000      0  3  3                  7     77    77777777777777777777777777777777777777777777777777777  3   0 3        3          0       0 0  333                  0         
consensus                     :                                                                                                                                         GTTGGGCCGAGAACGCCAGGG-TC-GTGA--TGATGTTATCCTTCTC--AT----TTTTTTC--TTTNTCTTTCTC----GCTTTCTTCA-------ATT--TGAAGT-NTTTATTTAT------------TA--TNTGTTCNCCTCGCCGT-TTTAGTTTAATAAACGTAACATGTAACGC-TGTGGGAGGAACTGTAACTAATNTTGGAATAACCTGTAGTCCAACCCATTT-CTT---TT-CGCNTGATTAT--TACGCC--T--TTAT--ATATGTGTGT--ATT-GT----G-------TAATGANGCT--TGCAATAA-AATA-TTATNA-AAT-GACAATGACAAAT----GTT---TTATT--AAGCAATCTA--------GGC----------CTCCGGCCCAT---AATACA-T---A-ATTN--CA-TT--TATATC--ATATA-----TAG-TGAAA-AGTG---ACAAC--A--GTGTTACAAATATAAAACGTATATTAA-TA------GATAGATAACAATTGATTTGCATTTGTTTACA-TGTTAAGTGATTGGAAAAAT-A-A-TT-TCTTTT-ATTNAATA-CTTCAAAAATAAATTTAC--ATAGTGTTTTTAATTTTTGTTCATTT----GTTATACTCATTAATCTGTAAAATGAATTTA------AATTT-----ATGTTA-----GTA---AC-ATTCAAAATAT------------------------CGAAAAG-T-------------TTCA-----TAA----------TAAGAACATTCCATGCATACATGGTATTCATCTTCAACTTCTCCAGCTGCACAAAGTATACAAAT----TCTATCTTCGTAAGCAACATTATTGTGTCTTCCGGTTTCTA-ATATAATTTGTGAGCCGAGCATCTNAATTTCGCAAA-GCAAT--------TTC--AG-T-TAGA--------TAAAGTAAG--------ATTTTTTT-CAACATTTAAAAGAGATTTAAAGTTTTCATAA---TGGACGGTTTTGTGTGACTGAGAAATAT
Reference ( gi|1 )            :                                                                                                                                         GTTGGGTCGAGAATGCTAGGG-TC-GTTA--TGATGTTATCCGTCTC--AT----TTTTTTT--TTTGTCTTT-------GCTTTCTTCA-------CTA--TGAATT-TTTAATTTAT-----------GTA--TGTGTTAACCCCGCCAT-TT-AGTTCTATAAACGTAACACGTGGCGC-TGTGGGAGCAACTGTAACTAATTATGGAATAACGTGTAGTCCAACCAATTTGCTT---TT-TACTTGATTAT--TACGCC--T--CTATTCACATATGTGT--ATG-GT----G-------TAATGAGGCT--TGCAATAA-AATA-CTATAA-AAT-GACAATGACAAAT----GTT---TTAAT--AAGCAATCTA--------GGC----------CTCCGGCCCGT---AATACA-T---A-ATTT--CA-TG--TATATC--ATATA-----TAG-TGAAA-AGTG---ACAAT--T--GTGTTACAAATAGAAAACATATATCAA-TA------GACAGATGACAATTGATTTGCATTTGTTTGCA-TGCTAAGTGATTGAAAAAAT-A-A-TT-TCTTTT-ATTTATTA-CTTCAAAAATAAATTTAC--TTAATGTTTTTAATTTTTGTTCATTT----GTTATACCCATTAACCTGTAAAAGGAATTTA------AATTT-----ATGTTA-----GTA---GC-ATGCAAAATAC------------------------C---------------------TTCA-----TAA----------TAGAAGCATTCCATGCATACATGGTATTCATGTT-AAGTTCTCCAGCTGCATAAAGTGTACAAAT----TCTATCTTCGTAAGCAACATGATTGTGTCTTCCAGTTTCTACATATAATTTGTGAGCTGAGCATCTTAATTTTGCAAAAGCAAT--------TT--------------------TAAAGTAAG--------ATATTTCT-CAACATTTAAAAGAGATTTGAAGTTTTTAGAA---TGGACAGTTTTGTGTGACGGAGAAATAT
gi|4                          :                                                                                                                                         GTTGGGCCGA-AACGCCAGGGGTA-GTGA--TGATGTTATCCTTCTC--AT----TTTCTTT--TTTATCTAT-------A--TTCTTCGCATTGTTCTATTTGAAGT-ATTTATCTAT-----------TTA--TTTGTT
gi|8                          : tcactctaaattaatatgtatatctcctttgagatgttgacgtttgaggcaaaggttatggacagggatggtatgaacctggcagtgacgttgggtcgggaaggcaggggttgcaagggtaggaaccaggcagtgacTTGGGTCG-GAACGGCAGGG-TTAGTGA--TGATGTTATTTTTCTC--ATATTCTTTTTTC--TTCCTCTTTTTC----GCTTTCTTCA-------ATT--TGAAGT-----ATTCAT-------------A--TGT-TTCCCCTCGCTGT-TTTAGTTTAATAAACGTAACATGTAACGC-TGTGGGGAGAACTGTAACTAATGTTGGAAAAA-----AG--CAATTGTTTT--TT---TT-TTCATGATTAT--TATGCCAGT--TTAT--ATATGTGTGT--ATT-GT----A-------TAATGAAACT--TGCAATAA-AATA-TTATTA-AAtttcctcccacacaacaccannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntgccactgtttatatatatatgtttgtgtgtgtattgtatgatgaagcttgtaataaaatattattgaac
gi|10                         :                                                       actctaaatcaatatgtacatgtcccctgagatgatgacgttcgaggttcaggttatgggaaggggtggcgacgataggaaccatgcaggggtaATGC-ATGG-AC-GTTGGGTGATGTTATCT-TCTC--AT----ATTTTTC--TCTCTCTTTCTTTTTAGCTTTCTTCA-------ATT--TGAAGT-CTTTATTTATTAAGTTTGTTTGTT--TGTTTTCTCCCTGCCAT-TTTAGTCTAATAAACGTAACATGTAACGC-TGTTGGAAGGATTGTAACGAATTTCGGAATAACCTATATTCCAACACATAGCCTT---TT-CACC--ATTAT--TATGCC--A--CTGTCTATATATATAT--ATGTGT----GTATTCTATAATGGCGTT--TTCAATAC-AATA-TTATGA-AActatt
gi|14                         :                                                                                                                                                                          aatcTATTCTTCTCGTAT----CCTTATTAATTTGT-TTC-------ACTTTCTTCA-------ATT--TGAATTATTTA--TTGT------------TAACTTTGTTAATCTCGCCATATT-AGTTTAATAAACGTAACAAATGACGCGTGTGTAAG--ACAGTAACTAATTTTGAAATAATCAGCCGTCCATCCCATTTctaaac
gi|21                         :                                                                                                                                                                                                                                                                                                                                   GGTAGCA-CTGTAACTGATGTTGAAGTAGCATGTAGACCAACCCATTCGCTTGTGTTATGTTTG-TTATTGTACGAA--TGATTAT--ATATATGTATAAATT-GTAAAAG-------TAATAATTTTTATGCAACAG-AATA-TGATTA-AAaatgtgtcgtcatgtttaatatgcaacgttggtgtatgactttgtgtgtattgtaaaatgcag
gi|4                          :                                                                                                                                                                                                                                                                                                                                                                                                                             gTGTGTGT--ATT-GT----A-------TGATGAAGCT--TGTAATAA-AATA-TTATctta
gi|29                         :                                                                  tcactctaaattaatatgtatatctcctttgagatgttgacgtttgaggcaaaggttatggacagggatggtatgaacctggcagtgacgttgggtcgggaaggcaggggttgcaagggtaggaaccaggcagtgacgttgggccgaaacgccaggggtagtgatgatgttatccttctcattttcttttttatctatattcttcgcattgttctatttgaagtatttatctatttatttgtttttcctcccacacaacaccannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntgccactgtttatatatatatgtttgGTAATAATAATA---ATCA-CATTGACAATGACACAT----GAT---TTATT--CAACAATCCA--------TGT----------CTCCGGCCCAT---AAAACATT---G-ATTG--CA-TGA-TA-ATA--ATA-A-----TAA-TGTAA-Atgaac
gi|17                         :                                                                                                                                                                                                                                                                                                                                                                                                                                                                       caATAA-AATG-A-ATAA-A-T-GA--ATGACACAT----GTT---TGATT--AAGCAATCTA--------GGC----------CTCCAACC-GTCAAAATGT--T---A-ATGA--CA-TT--TATACC--ATATA-----TAG-TGAAA-TGTG---AAAAG--A--GTGTTACGTATATAAAACATATCTAAAGTAAGGAGGGACAGA-GAGAA-CGCTTT-CACTTG
gi|7                          :                                                                                                                                                                                                                                                                                                                                                                                                                                                                           AA-AATAGTTATGACAAT-GACAATGACAAAT----GTT---TTATT--AAGCAATTTA--------GGC----------CTCCG-CCTAT---AATACA-T---A-ATTA--CA-TT--TATATC--ATATA-----TAG-TGAAA-AGTG---ACAAC--A--GTGTTACAAATATAAAACGTTTATTAA-TA------GATAAATAACAATTGCTTTGCATTTGTTTACA-TGTTTAGTGATTGGAAAAATAA-A-TT-TCTTTT-A-TTA--A-ATTCAAAAATAAATTTGC--ATAGTGTTTTTAGTTTTTGTTCATTT----GTTATACTCATTAATCTGTAAAATGAATTTG------AATTT-----ATGTTA-----GTA---AC-ATTCAAAATA
gi|36                         :                                                                                                                                                                                                                                                                                                                                                                                                                 ttatccttgaaaacacatgacattttcattatttcactatatctacaatatttctataAA-AAAA-CT-TAA-G-T-GATAATGACAAAT----GTT---TT-AT--AAGCAGTCAA--------GGC----------ATACAGTCCAT---AAttgata
gi|6                          :                                                                                                                                                                                                                                                                                                                                                                                                                                                                               cTA-ATATGACAAT-GACAAAGACAAAT----GTT---TTATT--AAGCAATCTA--------GAC----------ATACGGTCCAT---TATACA-T---A-ATTA--CA-TA--TATATC--ATATA-----TTG-TGAAA-AGTG---ACAAC--A--GTGTTACAAATATAAAACGTATATTAC-TA------GATAGATAACAAATGATTTACATTTATATACA-TGTTAAGTGATTGGAAAAAT-ACA-TT-TCTTTT-ATTAGATA-CTTCAAAAATAAATTTAC--ATTGTGTTTTTAATATTTGTTCATTT----GTTATATTCATTAATCTGTAAAATGAATTTG------AATTA-----ATGTTA-----GTA----C-ATTCAAAATA-----------------------------------------------TTGA-------------------AAAAGTATTCATTGCGTAAA---TATTCATG
gi|24                         :                                                                                                                                                                                                                                                                                                                                                                                                                                                            ttgtttagtgaatctggcaagtcgtACAA-AGT-AAAAATGACAAATTTTTGTTAAATTAATTTAAACAATTTT--------AAT----------CTCTA--CCAA---AATACA-T---TTATTA--CA-TT--TACACC--ATGTA-----CAG-TGAAA--------------------GTTTC---------ACATAT-CCTA-TA------GATAGATAAACATTGATTTGCaaaggaacattccatg
gi|2                          :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      tgA-AAT-GACAATTACAAAT----GTT---TTATC--AAGCAATTTA--------GGC----------CTCCAGCCTAT---AATACA-T---A-ATTA--CA-TT--TATATC--ATATA-----TAG-TGAAA-AGTG---ACAAC--A--GTGTTACAAATATAAAATGTATATTAA-TA------GATAAATAACAATTGCTTTGCATTTGTTTACANNNNNNNNNNNNNNNNNNNNN-N-N-NN-NNNNNN-NNNNNNNN-NNNNNNNNNNNNNNNNNN--NNNNNNNNNNNNNNNNNNNNNNNNNN----NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN------NNNNT-----AAGTTA-----ATA---AC-ATTCAAAATAT------------------------TGAAAAGGTA------------TTCACTGCGTAAAGCTTCATAATAGGAACATTCCATGCATACATGGTATTCATCTTCAATTTCTCCAGCTGCACAAAGTATACAAAT----TCTATCTTCGTAAGCAACATTATTGTGTCTTTCAGTTTCTATATATAATTTGTGAGCTGAGCATCTAAATTTCACAAAAGCAAT--------TTTTTAACTTTAGAGGTATTGATAAAGTAAGATATATATATATTTTT-CAACATTT--AAGAGATTTAAAGTTTTCATAA---TGGACAGCTTTGTGTGACTGAGAAATAT
gi|26                         :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         -AAT-GACAATGGAAATT----GTT---TTATT--AAGCAATCTA--------GGCGGAAATAGGACTACAG--TGT-----TACA-----A-ATATAAAA-CG--TATATTA-ATATA-----TAGATAACA-ATTG---AT--T--T--GTATTA
gi|20                         :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    atggc-AAT-GACAATGACACAT----ATG---GTATT--AAGCAATTTA--------GGC----------CTCAGGCACAT---AAAACA-TTACA-ATCT-----------TATC--ACATA-----g
gi|19                         :                                                                                                                                                                                                                                                                                                                                                                                                                                                                  atctttatgacaatgttaatgtt-AAT-GACAATGACAAAT----GTT---TTATT--AAGCAATTTA--------GGacatggcaacattattgcaaatgtaatagacattgttaaatacctaacagt
gi|34                         :                                                                                                                                                                                                                                                                                                                                                                                                                                          gaccttgacgtcatagttaatgtttagtttaatgacaaatgtcaatgacAT-GGCAATGACA--------TT---TCATT--AAGCAATTTATATCTATAGGC----------CTCTGGCCCAT---AATTCATT---A-ATTG--CA-Ttttaatatcaacatgtatcttctattttaaacttaaatcattcaacaattacaactaagcaaaa
gi|3                          :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            T-GGCAATGAAAAAT----GTT---TTATT--AAGCAATCTA--------GAC----------CTCCGGCCCAT---AGTACA--------------------------------------TAA-TTACA-AGTG---ACAATGTTCAGTGCTACAAATATTAAACGTATATTAA-TA------GATAT-TAACCATTGATTTGCATTTGTTTACA-TGGTATGTGATTAGAAAAAT-A-A-TT-TTTTTTTATTAAATA-CTTCAAAAATAAATTTAC--ATAGTGTTTTAAATTTGTGTTCATTT----GTTATACTCATTAATCTGTAAAATGAATTTA------AATTT-----ATGTTT-----GTA---AC-ATTCAAAATATTGGAAAGATATTCACTGAGTAAAGC---------------------TTCA-----TAA----------TAAGAACATTCCATGCATACATGGTATTCATCTTCAACTTCTCCAGCTGCACAAAGTATACAAATTCTATCTATCTTCGT---CAACt
gi|25                         :                                                                                                                                                                                                                                                                                                                                                                                                                         ttatctttgacttttacgtacaacttttatacagtttaataaatgcccagatatatgacaatgacacT-GAAAATGATAAAT----GTT---TTATTC-AAGTA---TA----------------------TCCAGCCCAT----ACACA-T---A-A-AT--CA-TGTTTATATCAAATCTA-----TAA-TGAAT-AGTGGCCACAAC--A--GGGTGAAAAATGGAA
gi|23                         :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 AATGACAAAT----CTT---TTGTT--AAACAATCCA--------GAC----------ATTCGGCCCGT---AAT----------ATTT--CATTT--TATAGT--ATATA-----TAA-TGAAA-A------CCA--------TGATACAAATATAGTACGTATtgaaaatta
gi|5                          :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 aaTGACAAAT----GTT---TTATT--AAACAATCTA--------GGC----------TTCCGGACCAT---AATACA-T---A-ATTA--CA-TT--TATATC--ATATA-----TAG-TGAAA-AGTG---ACAAC--A--GTGTTACAAATATAAAACATATATTAA-TA------GATTGATAACAACTAATTTACA--TG--TACA-TGTTAAGTGACTGGAAAAATAA-A-TT-TCTTT---TTTAAAAGCTTTAAAAACAAATTTACT-TTAGTATTTTTAATTTTTGTTCATTT----GTTATACTGATTAATCTGAAAAATAAATTTATTTATTAACTTTCAAAATATTATAAAGGTATTTGCTGTGTAA---AT------------------------C---------------------TTCC-----TAA----------TAAGAACATTCCTTGCATATATGGTATTTATCTTCAACTTCTCCAGCTCAACAAAGTATACAAAT----TCTATCTTCGTAAGCAACATTATTGTTTCTTCCAGTcttacatgtattaacttaatgcaaattgatgtaca
gi|11                         :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  aaatgtAAT----GTT---TTAAT--GAGCAATATA--------GGT----------CTCCAGCCAAT---AATACA-T---A-ATTA--TA-TT--TATATC--ATATA-----TAG-TGAAT-AATG---ACAAC--A--CTGTTACAAATATTAAACGTATATTAA-TA------GATAGATAACAATTGATTTGTATTTGTTTAAA-TGTTGAGTAATTGGATAAATAA-A-TT-TCTATT-ATTTAATA-CTTCAAAAATAAAACGAC--ATAGACTTTTTAATTTTTGTTCATTT----GTTATACTCATTAATCTGTAAATTGAATTTA------AATTT-----ATGTTA-----GTA---AT-ATTCAAAATA
gi|9                          :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          ATGCA-T---A-ATTG--CA-TG--TGTCTT--ATATA-----TAG-TGAAA-AGTG---ATAAA--T--GTGTTACAAATATAAAACACATGTTAA-TA------GATAAAAAACAATTAATGTGCATTTGTTTACA-TATTAAGTGGTTG--------G-A-TTGTTTTTT-ATTAAATA-CTT---AAAT-AATTTGCAATT--TATTTTTAATTTTTGTTCATGTAATAATTCTGCTCATTGCTCTGTACAATGTGTTTA------AATTT-----ATATAA-----GTA---GC-ATTCAAAATAT------------------------TGAAAAGATCGTTGGATAAATGTTTA-----TAA----------CAGGAACAGTTCATACATAC----TATTTATATT-Attg
gi|33                         :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        tt--CA-TT--TATATC--ATATA-----TAG-TGAAA-AGTG---ACAAC--A--GTGTTACAAATATAAAACGTATATCAA-T---------------ATAATTGATTTGtatggtattcatcttca
gi|12                         :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           taA-TG--TATATC--ATAAG-----TAG-TGAAA-AGTG---ACAAC--A--GTGTTACGAATATAAAACGTTAATTGA-TA------GATAGATAACAATTGATTTGCATTTGTTTACA-TGTTAAGTGATTGGAAAAAT-A-AATT-TCTTTT-ATTAAATA-CTTCAAAAATAAATTAAC--ATCGTGTTTTTAGTTTTTATTCATTT----GTTATACTCATTAATCTGTAAAATGAATTTA------AATTT-----ATGCTA-----TTA---AC-ATTCAAAATA
gi|13                         :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 --TATATC--ATATAATTTATAT-TGAAT-AATG---ACAAC--A--CTGTTACAAATATAAAACATATATTAA-TA------GATAGATAACAATTGATTTGCCTTTGTTTACA-TGTTGAGTAATTGGATAAAT-A-AATT-TCTTTT-ATTTAATA-CTTCAAAAATAAAATGAC--ATAGACTTTTTAATTTTTGTTCATTT----GTTATACTCATAAATCTGTAAATTGAATTTA------AATTT-----ATGTTA-----ATA---AT-ATTGAAAATAttgaaaagatattcactccgtaaa
gi|26                         :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      tgttGAAATAG-G---ACTAC--A--GTGTTACAAATATAAAACGTATATTAA-TA------TATAGATAACAATTGATTTGTATTtt
gi|18                         :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 atggcaatgacaatggaaattgttttattaagcaatctaggcgAA-AGTG---ACAAC--G--GTGTTACAAATATAAAACGTATATTAA-TA------GATAAATAACAATTATTTTGCATTTGATGACA-TGag
gi|16                         :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  caatgacaaattacaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnTGCATATGTTTACA-TGTTAAATGATTGGAAAAAT-A-AATT-TCTTTT-ATTAAACA-CTTCAAAAATAAATTTAC--TTAGTGTTTTAAGTTTTTGTT-ATTT----GTTATACTCATT-ATCTGCAAAATGAATTTA------AATTT-----ATGGTA-----GTA---AC-ATTCAAAATt
gi|15                         :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                TTCGTAAGCAACATTATTGTGTC-------------AT-TA--TTGTTAGCTGAGCATCCTAATTTTGCAAATGTAATACTAAAATTTCAAAGGTATAGA--------TAAAGTAAG--------ATTTTTTTTCAACATTTAAAATAGATTTAAAGTTTTCATAA---TGGACAGTTTTGTGTGACTGAGAAATATtttaaaaaggtattt
gi|22                         :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        CAACATTGTTGTGTGTTCAGATTTCTAAATATAATTGTTGATCCGAACATCTGAGTTTCACAGA------------------------------------TA---T-----------ATTTTTTT-CAAAATGTAAAAGAGATTAAAAGTTTTCATAATTCTGGATGTTTTTGTccgagcgccaatcttgtacagtacagtcaataacacgttgtttgaataatgaa

Unaligned ( gi|27 ): TCTTAGTACAAAAAAAAACTCTTGTTTGGTATTGATAATTGAACAGACGAAGGTAACTTAACTTTGTTTTTTAGAAGTTAAAATTATATAAAACGTTCTAGCTGTTAC
Unaligned ( gi|28 ): TTTGATATGTTATAATAAAGAAATGACTATTTTAATTTACATCGACATTGCGCACAATCAAGAAATTTGAGTGTAAGATTTCTGCTAAATTTCCTTTGCACAATG
Unaligned ( gi|30 ): GGGCAAGGGTGGCGATGGTAGGAACCAGATAGGGACACAGGGGTAGTGATGATGTAATTCTTCTCATATTCCTTTTTTTCTTTCTTTTTCGTTTTCTTCAG
Unaligned ( gi|31 ): GTCCCCTGTGAAGTTGACGTGTATGGAGAATGTTACGAGTGGGCATGGTGGCGGAAACCTTGAATGGCTGTCTTGTTGCGGCAACT
Unaligned ( gi|32 ): CAAGTAGTTGCATTTAATTGACAATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAT
Unaligned ( gi|35 ): TTCTCTTTAAACATATGACATTTTCATTATTTCACTATATCTCCAATATTTCTATAAAAACAGTTA
Unaligned ( gi|37 ): ATAAATTTTAAAAAGTCTAAGTTCTCCTGAATATAAATATTGGAGCGTTTTAAG
Unaligned ( gi|38 ): TAAATCTCAAAAAAAGTAAAAGTCCTGACATTTCAAT

lowQualScore                  :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       1111111111111111111111111111111111                                                                                                                                                                                   111111111111111111111111111111111111111111                                                                                           
lowQualScore                  :                                                                               1111  11                    33333             111  11111111                         555555555555555555       1111                                      1                                                 22222222222222222         11     7777777777777777777        1111   111111           11111                 11111                                                                                                                                                                                                                                                     11111                                                                                                                              111     5555555555555555555555555555555555     111111   222222222                   444444444444                                             2222                                         222                                555555555555555555555555555555555555555555            44444444444                                     111                            
lowQualScore                  :                                                                0  99          5555  11            1       00000     2   1   111  99999999                   1     222222222222222222 1  8  5555       2   3                  1       0        88            1         999    6         88888888888888888 11 6    11     0000000000000000000   99   4444   999999    99     44444      22  99     22222   4    88  3 1 8   2             5555   444   33  2          88888888           33         5 2 2   1  2 33       33     55555        2    333    4444             333               2       0     99999999                                     1    33333  3      3   1  0                   3                           7777                                  3                       000     5555555555555555555555555555555555     999999   666666666 1                 111111111111                 0                           1111           0                 0   4       111 3  3         2        1        777777777777777777777777777777777777777777    3    3  11111111111               3                     777     2                      
lowQualScore                  :                                                                .  ..          ....  ..            .       .....     .   .   ...  ........                   .     .................. .  .  ....       .   .                  .       .        ..            .         ...    .         ................. .. .    ..     ...................   ..   ....   ......    ..     .....      ..  ..     .....   .    ..  . . .   .             ....   ...   ..  .          ........           ..         . . .   .  . ..       ..     .....        .    ...    ....             ...               .       .     ........                                     .    .....  .      .   .  .                   .                           ....                                  .                       ...     ..................................     ......   ......... .                 ............                 .                           ....           .                 .   .       ... .  .         .        .        ..........................................    .    .  ...........               .                     ...     .                      
lowQualScore                  :                                                                7  88          4444  00            0       55555     2   0   777  00000000                   0     888888888888888888 0  0  2222       0   2                  2       0        66            0         222    0         88888888888888888 88 0    00     4444444444444444444   22   2222   222222    22     99999      00  22     55555   0    77  3 0 0   9             0000   111   22  4          55555555           77         3 7 7   0  2 11       22     99999        1    999    7777             999               5       2     11111111                                     1    66666  6      6   0  1                   6                           7777                                  6                       666     0000000000000000000000000000000000     222222   777777777 0                 000000000000                 2                           2222           8                 8   6       000 2  2         0        0        222222222222222222222222222222222222222222    2    2  00000000000               2                     555     0                      
consensus                     :                                                          GTTGGGTCGAGAACGCCAGGG-TC-GT--GATGATGTTATCCTTCTCAT----NTTTTTTTTTNTCT---TTT-TC----GCTTTCTTCAATTTGAAGTATTTATTTA-T-TAA---------TTTG-TT--NNCCTCGCCGTTTTAGTTTAATAAACGTAACACGTGACGC-TGTGGGAAGAACTGTAACTAATTTTGGAATAACNTGTAGTCCAACCCAT-TCG-CTT---TT-CG-CNTGATTAT--TACGC--CG---------T--T--TAT--ATA----TGT------GTGT--ATTGT----ATAATGANGCT--TGCAA-----TAA-AATA-TTA-TNA-AAT-GACAATGACAAAT----GTT---TTA--TT-AAGCAATCTA--------GGCCTCCGGCC--CATAATACA-T-A-ATTACA-T--TTATATC--ATATA-----TAGTGAAA-AGTG---ACAA----CAGTGTTACAAAT---ATAAAACGTATATTA-ATAGATAGATAAC--------AATTGATTTGCATTTGTTTACATGTTAAGTGATTGGAAAAAT-A-A-TT-TCTTTT-ATTAAATACTTCAAAAATAAATTTAC-ATAGTGTTTTTAATTTTTGTTCATTTG----TTATACTCATTAATCTGTAAAATGAATTTAAATT-TATGTTAGTAACATTCAAAATATTG-AAAAG-T--T------------CG---------------TTCAT------AAT---------AGGAACATTCCATGCATAC------------ATGGTATTCATCTTCAACTTCTCCAGCTGCACAAAGTATACAAAT----TCTATCTTCGTAAGCAACATTATTGTGTCTTCCAGTTTCTACA-TATAATTTGTGAGCTGAGCATCTNAATTTCGC-AAA-GC--------AATTTC----------A---G--TA--GATAAAGTAAGA-T-------T-TTTTTCAACATTTAAAAGAGATTTAAAGTTTTCATAA---TGGACGGTTTTGTGCGACTGAGAAATAT
Reference ( family-3391 )     :                                                          GTTGGGCCGAGAACGCCAGGG-TC-GT--GATGATGTTATCCTTCTCAT----TTTTTTCTTTNTCT---TTC-TC----GCTTTCTTCAATTTGAAGTNTTTATTTA-T-TA----------TNTG-TT--CNCCTCGCCGTTTTAGTTTAATAAACGTAACATGTAACGC-TGTGGGAGGAACTGTAACTAATNTTGGAATAACCTGTAGTCCAACCCAT-TT--CTT---TT-CG-CNTGATTAT--TACGC--C----------T--T--TAT--ATA----TGT------GTGT--ATTGT----GTAATGANGCT--TGCAA-----TAA-AATA-TTA-TNA-AAT-GACAATGACAAAT----GTT---TTA--TT-AAGCAATCTA--------GGCCTCCGGCC--CATAATACA-T-A-ATTNCA-T--TTATATC--ATATA-----TAGTGAAA-AGTG---ACAA----CAGTGTTACAAAT---ATAAAACGTATATTA-ATAGATAGATAAC--------AATTGATTTGCATTTGTTTACATGTTAAGTGATTGGAAAAAT-A-A-TT-TCTTTT-ATTNAATACTTCAAAAATAAATTTAC-ATAGTGTTTTTAATTTTTGTTCATTTG----TTATACTCATTAATCTGTAAAATGAATTTAAATT-TATGTTAGTAACATTCAAAATATCG-AAAAG-----------------T----------------TTCAT------AAT---------AAGAACATTCCATGCATAC------------ATGGTATTCATCTTCAACTTCTCCAGCTGCACAAAGTATACAAAT----TCTATCTTCGTAAGCAACATTATTGTGTCTTCCGGTTTCTA-A-TATAATTTGTGAGCCGAGCATCTNAATTTCGC-AAA-GC--------AATTTC----------A---GT-TA--GATAAAGTAAGA-T-------T-TTTTTCAACATTTAAAAGAGATTTAAAGTTTTCATAA---TGGACGGTTTTGTGTGACTGAGAAATAT
gi|1                          :                                                          GTTGGGTCGAGAATGCTAGGG-TC-GT--TATGATGTTATCCGTCTCAT----TTTTTTTTTTGTCT---TT--------GCTTTCTTCACTATGAATTTTTAATTTA-TGTA----------TGTG-TT--AACCCCGCCATTT-AGTTCTATAAACGTAACACGTGGCGC-TGTGGGAGCAACTGTAACTAATTATGGAATAACGTGTAGTCCAACCAAT-TTG-CTT---TT-TA-CTTGATTAT--TACGC--C----------T--C--TATTCACA----TAT------GTGT--ATGGT----GTAATGAGGCT--TGCAA-----TAA-AATA-CTA-TAA-AAT-GACAATGACAAAT----GTT---TTA--AT-AAGCAATCTA--------GGCCTCCGGCC--CGTAATACA-T-A-ATTTCA-T--GTATATC--ATATA-----TAGTGAAA-AGTG---ACAA----TTGTGTTACAAAT---AGAAAACATATATCA-ATAGACAGATGAC--------AATTGATTTGCATTTGTTTGCATGCTAAGTGATTGAAAAAAT-A-A-TT-TCTTTT-ATTTATTACTTCAAAAATAAATTTAC-TTAATGTTTTTAATTTTTGTTCATTTG----TTATACCCATTAACCTGTAAAAGGAATTTAAATT-TATGTTAGTAGCATGCAAAATACC-----------------------------------------TTCAT------AAT---------AGAAGCATTCCATGCATAC------------ATGGTATTCATGTT-AAGTTCTCCAGCTGCATAAAGTGTACAAAT----TCTATCTTCGTAAGCAACATGATTGTGTCTTCCAGTTTCTACA-TATAATTTGTGAGCTGAGCATCTTAATTTTGCAAAA-GC--------AATTT------------------------TAAAGTAAGA-T-------A-TTTCTCAACATTTAAAAGAGATTTGAAGTTTTTAGAA---TGGACAGTTTTGTGTGACGGAGAAATAT
gi|10                         :                                                                          CATGG-AC-GTTGGGTGATGTTATC-TTCTCAT----ATTTTTCTCTCTCT---TTC-TTTTTAGCTTTCTTCAATTTGAAGTCTTTATTTA-T-TAAGTTTGTTTGTTTG-TTTTCTCCCTGCCATTTTAGTCTAATAAACGTAACATGTAACGC-TGTTGGAAGGATTGTAACGAATTTCGGAATAACCTATATTCCAACACATAGC--CTT---TT-CA-CC--ATTAT--TATGC--CACTGTCTATAT--A--TAT--ATA----TGT------GTGT--ATTCT----ATAATGGCGTT--TTCAA-----TAC-AATA-TTA-TGA-AA
gi|11                         :                                                                                                                                                                                                                                                                                                                                                                                                                               aatcatgAAT----GTT---TTA--AT-GAGCAATATA--------GGTCTCCAGCC--AATAATACA-T-A-ATTATA-T--TTATATC--ATATA-----TAGTGAAT-AATG---ACAA----CACTGTTACAAAT---ATTAAACGTATATTA-ATAGATAGATAAC--------AATTGATTTGTATTTGTTTAAATGTTGAGTAATTGGATAAATAA-A-TT-TCTATT-ATTTAATACTTCAAAAATAAAACGAC-ATAGACTTTTTAATTTTTGTTCATTTG----TTATACTCATTAATCTGTAAATTGAATTTAAATT-TATGTTAGTAATATTCAAAATATTG-ctaaac
gi|12                         :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             A-T--GTATATC--ATAAG-----TAGTGAAA-AGTG---ACAA----CAGTGTTACGAAT---ATAAAACGTTAATTG-ATAGATAGATAAC--------AATTGATTTGCATTTGTTTACATGTTAAGTGATTGGAAAAAT-A-AATT-TCTTTT-ATTAAATACTTCAAAAATAAATTAAC-ATCGTGTTTTTAGTTTTTATTCATTTG----TTATACTCATTAATCTGTAAAATGAATTTAAATT-TATGCTATTAACATTCAAAATATTG-AAAAG-----------------
gi|13                         :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              -T--TTATATC--ATATAATTTATATTGAAT-AATG---ACAA----CACTGTTACAAAT---ATAAAACATATATTA-ATAGATAGATAAC--------AATTGATTTGCCTTTGTTTACATGTTGAGTAATTGGATAAAT-A-AATT-TCTTTT-ATTTAATACTTCAAAAATAAAATGAC-ATAGACTTTTTAATTTTTGTTCATTTG----TTATACTCATAAATCTGTAAATTGAATTTAAATT-TATGTTAATAATATTGAAAATATatattcactccgtaaa
gi|14                         :                                                                                             tgTATTCTTCTCGT----ATCCTTATTAATTT---GTT-TC----ACTTTCTTCAATTTGAATTATTTATT-G-T-TAAC--------TTTG-TT--AATCTCGCCATATTAGTTTAATAAACGTAACAAATGACGCGTGTGTAAG--ACAGTAACTAATTTTGAAATAATCAGCCGTCCATCCCAT-TTAATGT---GT-CGTCATGTTTAA--TATGCAACG---------T--TGGTGT--ATGACTTTGT------GTGT--ATTGT----AAAATGt
gi|15                         :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      TTCGTAAGCAACATTATTGTGTC-------------A-T-TA--TTGTTAGCTGAGCATCCTAATTTTGC-AAATGTAATACTAAAATTTC----------AAAGGTATA--GATAAAGTAAGATT-------T-TTTTTCAACATTTAAAATAGATTTAAAGTTTTCATAA---TGGACAGTTTTGTGTGACTGAGAAATATcag
gi|16                         :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          TGCATATGTTTACATGTTAAATGATTGGAAAAAT-A-AATT-TCTTTT-ATTAAACACTTCAAAAATAAATTTAC-TTAGTGTTTTAAGTTTTTGTT-ATTTG----TTATACTCATT-ATCTGCAAAATGAATTTAAATT-TATGGTAGTAACATTCAAAATTTTA-AAAAG-----------------ccgagcgccaatcttgtacagtacagtcaataacacgttgtttgaataatgaa
gi|17                         :                                                                                                                                                                                                                                                                                                                                                                                                 A-----TAA-AATG---A-ATA-AAT-GA--ATGACACAT----GTT---TGA--TT-AAGCAATCTA--------GGCCTCCAACCGTCAAAATGT--T-A-ATGACA-T--TTATACC--ATATA-----TAGTGAAA-TGTG---AAAA----GAGTGTTACGTAT---ATAAAACATATgtattt
gi|18                         :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           AA-AGTG---ACAA----CGGTGTTACAAAT---ATAAAACGTATATTA-ATAGATAAATAAC--------AATTATTTTGCATTTGATGACATGTctaaagtaaggagggacagagagaacgctttcacttg
gi|19                         :                                                                                                                                                                                                                                                                                                                     caatgacaaattacaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnA-AATG-TCAATGACAAT-GACAATGACAAAT----GTT---TTA--TT-AAGCAATTTA--------GG
gi|2                          :                                                                                                                                                                                                                                                                                                                                                                                  gaccttgacgtcatagttaatgtttagtttaatgacA-AAT-GACAATTACAAAT----GTT---TTA--TC-AAGCAATTTA--------GGCCTCCAGCC--TATAATACA-T-A-ATTACA-T--TTATATC--ATATA-----TAGTGAAA-AGTG---ACAA----CAGTGTTACAAAT---ATAAAATGTATATTA-ATAGATAAATAAC--------AATTGCTTTGCATTTGTTTACANNNNNNNNNNNNNNNNNNNN-N-N-NN-NNNNNN-NNNNNNNNNNNNNNNNNNNNNNNNNN-NNNNNNNNNNNNNNNNNNNNNNNNNNN----NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTAAGTTAATAACATTCAAAATATTG-AAAAGGTATTCACTGCGTAAAGC----------------TTCAT------AAT---------AGGAACATTCCATGCATAC------------ATGGTATTCATCTTCAATTTCTCCAGCTGCACAAAGTATACAAAT----TCTATCTTCGTAAGCAACATTATTGTGTCTTTCAGTTTCTATA-TATAATTTGTGAGCTGAGCATCTAAATTTCAC-AAAAGC--------AATTTTTTAACTTTAGA---GG-TATTGATAAAGTAAGA-TATATATATATTTTTCAACATTTAA--GAGATTTAAAGTTTTCATAA---TGGACAGCTTTGTGTGACTGAGAAATATtttaatatcaacatgtatcttctattttaaacttaaatcattcaacaattacaactaagcaaaa
gi|20                         :                                                                                                                                                                                                                                                                                                                                                                                                                       -AAT-GACAATGACACAT----ATG---GTA--TT-AAGCAATTTA--------GGCCTCAGGCA--CATAAAAC------ATTACA-A--TCTTATC--ACAT------------AA-CATG---GCAA----CATTATTGCAAAT---GTAATA-G-ACATTG-TTAAATACCTAAC--------AGT
gi|21                         :                                                                                                                                                                                                                   atctttatgacaatgttaatgttGGGTAGCACTGTAACTGATGTTGAAGTAGCATGTAGACCAACCCAT-TCG-CTTGTGTTATG-TTTG-TTATTGTACGA--A----------TGAT--TAT--ATA----TAT------GTATAAATTGTAAAAGTAATAATTTTTATGCAA-----CAG-AATA-TGA-TTA-AA
gi|22                         :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              CAACATTGTTGTGTGTTCAGATTTCTA-AATATAATTGTTGATCCGAACATCTGAGTTTCAC-A----------------------------------------GATA---TA----T-------T-TTTTTCAAAATGTAAAAGAGATTAAAAGTTTTCATAATTCTGGATGTTTTTGTACAGCTGAAGTATATctta
gi|23                         :                                                                                                                                                                                                                                                                                                                                                                                                                               AATGACAAAT----CTT---TTG--TT-AAACAATCCA--------GACATTCGGCC--CGTAAT--------ATTTCATT--TTATAGT--ATATA-----TAATGAA-----------AA----CCATGATACAAAT---ATAGTACGTATCTTACATGTAT---TAACTTAATGCAAATTGATGTACA
gi|24                         :                                                                                                                                                                                                                                                                                                                                                                                                                aaA-CAA-AGT-AAAAATGACAAATTTTTGTTAAATTAATTT-AAACAATTTT--------AATCTCTA--C--CAAAATACA-T-TTATTACA-T--TTACACC--ATGTA-----CAGTGAAA--------------------GTTTCACAT---AT----CCT-------ATAGATAGATAAA--------CATTGATTTGC
gi|25                         :                                                                                                                                                                                                                                                                                                                                                                                                                        tgT-GAAAATGATAAAT----GTT---TTA--TTCAAGTA---TA------------TCCAGCC--CAT-ACACA-TAA-ATCATG-T--TTATATCAAATCTA-----TAATGAAT-AGTGGCCACAA----CAGGGTGAAAAATGGAATGAAA
gi|26                         :                                                                                                                                                                                                                                                                                                                                                                                                                       -AAT-GACAATGGAAATT----GTT---TTA--TT-AAGCAATCTA--------GGCatta
gi|26                         :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    atggcGAAATAG-G---ACTA----CAGTGTTACAAAT---ATAAAACGTATATTA-ATATATAGATAAC--------AATTGATTTGTATTggaaataggactacagtgttacaaatataaaacgtatattaatatatagataacaattgatttgtattag
gi|29                         :                                                                                                                                                                                                                                                                                                                                                   atggcaatgacaatggaaattgttttattaagcaatctaggcgGTAA-----TAATAATA---A-TCA-CATTGACAATGACACAT----GAT---TTA--TT-CAACAATCCA--------TGTCTCCGGCC--CATAAAACATT-G-ATTGCA-TGATAATA----ATA-A-----TAATGTAA-Aag
gi|3                          :                                                                                                                                                                                                                                                                                                                                                                                                                        caT-GGCAATGAAAAAT----GTT---TTA--TT-AAGCAATCTA--------GACCTCCGGCC--CATAGTACA-T-A-ATTACA--------------------------------AGTG---ACAATGTTCAGTGCTACAAAT---ATTAAACGTATATTA-ATAGATAT-TAAC--------CATTGATTTGCATTTGTTTACATGGTATGTGATTAGAAAAAT-A-A-TT-TTTTTTTATTAAATACTTCAAAAATAAATTTAC-ATAGTGTTTTAAATTTGTGTTCATTTG----TTATACTCATTAATCTGTAAAATGAATTTAAATT-TATGTTTGTAACATTCAAAATATTG-GAAAGATATTCACTGAGTAAAGC----------------TTCAT------AAT---------AAGAACATTCCATGCATAC------------ATGGTATTCATCTTCAACTTCTCCAGCTGCACAAAGTATACAAATTCTATCTATCTTCGT---CAAC
gi|30                         : ttatctttgacttttacgtacaacttttatacagtttaataaatgcccagatatatgacaatgacacGGACACAGGGG-TA-GT--GATGATGTAATTCTTCTCATATTCCTTTTTTTCTTTCT---TTT-TC----GTTTTCTTCA
gi|33                         :                                                                                                                                                                                                                                                                                                                                                                                                                                                                          gggcaagggtggcgatggtaggaaccagatagTACA-T--TTATATC--ATATA-----TAGTGAAA-AGTG---ACAA----CAGTGTTACAAAT---ATAAAACGTATATCA-AT---------AT--------AATTGATTTGg
gi|34                         :                                                                                                                                                                                                                                                                                                                                                                                                                         AT-GGCAATGACA--------TT---TCA--TT-AAGCAATTTATATCTATAGGCCTCTGGCC--CATAATTCATT-A-ATTGCA-T--T
gi|36                         :                                                                                                                                                                                                                                                                                                                                                                                                                   -TTA-AGT-GATAATGACAAAT----GTT---TTA---T-AAGCAGTCAA--------GGCATACAGTC--CATAA
gi|4                          :                                                  caaaaaacGTTGGGCCGA-AACGCCAGGGGTA-GT--GATGATGTTATCCTTCTCAT----TTTCTTTTTTATCTATATTCTTC----GCATTGTTCTATTTGAAGTATTTATCTATT-TA----------TTTGTTT--TTCCTC
gi|4                          :                                                                                                                                                                                                 tcactctaaattaatatgtatatctcctttgagatgttgacgtttgaggcaaaggttatggacagggatggtatgaacctggcagtgacgttgggtcgggaaggcaggggttgcaagggtaggaaccaggcagtgac--TAT--ATA----TGTTTGTGTGTGT--ATTGT----ATGATGAAGCT--TGTAA-----TAA-AATA-TTA-TTG-AAccacacaacaccannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntgccactgtttatatatatatgtttgtgtgtgtattgtatgatgaagcttgtaataaaatattattgaac
gi|5                          :                                         tcactctaaattaatatgtatatctcctttgagatgttgacgtttgaggcaaaggttatggacagggatggtatgaacctggcagtgacgttgggtcgggaaggcaggggttgcaagggtaggaaccaggcagtgacgttgggccgaaacgccaggggtagtgatgatgttatccttctcattttcttttttatctatattcttcgcattgttctatttgaagtatttatctatttatttgtttttcctcccacacaacaccannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntgccactgtttataTGACAAAT----GTT---TTA--TT-AAACAATCTA--------GGCTTCCGGAC--CATAATACA-T-A-ATTACA-T--TTATATC--ATATA-----TAGTGAAA-AGTG---ACAA----CAGTGTTACAAAT---ATAAAACATATATTA-ATAGATTGATAAC--------AACTAATTTACA--TG--TACATGTTAAGTGACTGGAAAAATAA-A-TT-TCTTTT--TTAAAAGCTTTAAAAACAAATTTACTTTAGTATTTTTAATTTTTGTTCATTTG----TTATACTGATTAATCTGAAAAATAAATTT--ATT-TAT-----TAACTTTCAAAATATTATAAAGG-----------------TATTTGCTGTGTAAATCTTCCT------AAT---------AAGAACATTCCTTGCATAT------------ATGGTATTTATCTTCAACTTCTCCAGCTCAACAAAGTATACAAAT----TCTATCTTCGTAAGCAACATTATTGTTTCTTCCAGTc
gi|6                          :                                                                                                                                                                                                                                                                                                                                                                  aaatgtTTGT----TTAGTGAATCT--GGCAAGTCGTTAA-------TA-TGACAAT-GACAAAGACAAAT----GTT---TTA--TT-AAGCAATCTA--------GACATACGGTC--CATTATACA-T-A-ATTACA-T--ATATATC--ATATA-----TTGTGAAA-AGTG---ACAA----CAGTGTTACAAAT---ATAAAACGTATATTA-CTAGATAGATAAC--------AAATGATTTACATTTATATACATGTTAAGTGATTGGAAAAAT-ACA-TT-TCTTTT-ATTAGATACTTCAAAAATAAATTTAC-ATTGTGTTTTTAATATTTGTTCATTTG----TTATATTCATTAATCTGTAAAATGAATTTGAATT-AATGTTAGT-ACATTCAAAATATTGAAAAAG-----------------TA---------------TTCATTGCGTAAATATTCATGAAAGGAACATTCCATG
gi|7                          :                                                                                                                                                                                                                                                                                                                                                                                                        AA-AATAGTTA-TGACAAT-GACAATGACAAAT----GTT---TTA--TT-AAGCAATTTA--------GGCCTCCG-CC--TATAATACA-T-A-ATTACA-T--TTATATC--ATATA-----TAGTGAAA-AGTG---ACAA----CAGTGTTACAAAT---ATAAAACGTTTATTA-ATAGATAAATAAC--------AATTGCTTTGCATTTGTTTACATGTTTAGTGATTGGAAAAATAA-A-TT-TCTTTT-ATTAAA---TTCAAAAATAAATTTGC-ATAGTGTTTTTAGTTTTTGTTCATTTG----TTATACTCATTAATCTGTAAAATGAATTTGAATT-TATGTTAGTAACATTCAAAATATTG-A
gi|8                          : ttatccttgaaaacacatgacattttcattatttcactatatctacaatatttctataTTGGGTCG-GAACGGCAGGG-TTAGT--GATGATGTTATTTTTCTCATATTCTTTTTTCTTCCTCT---TTT-TC----GCTTTCTTCAATTTGAAGTATTCAT-------A----------TGT--TT--CCCCTCGCTGTTTTAGTTTAATAAACGTAACATGTAACGC-TGTGGGGAGAACTGTAACTAATGTTGGAAAAA-----AG--CAA-TTGT-TT--TTT---TT-TT-CATGATTAT--TATGC--CAG--------T--T--TAT--ATA----TGT------GTGT--ATTGT----ATAATGAAACT--TGCAA-----TAA-AATA-TTA-TTA-AAta
gi|9                          :                                                                                                                                                                                                                                                                                                                                                                                                actctaaatcaatatgtacatgtcccctgagatgatgacgttcgaggttcaggttatgggaaggggtggcgacgataggaaccatgcaggggtaATGCA-T-A-ATTGCA-T--GTGTCTT--ATATA-----TAGTGAAA-AGTG---ATAA----ATGTGTTACAAAT---ATAAAACACATGTTA-ATAGATAAAAAAC--------AATTAATGTGCATTTGTTTACATATTAAGTGGTTGGA----------TTGTTTTTT-ATTAAATACTT---AAATAA-TTTGC-AATTTATTTTTAATTTTTGTTCATGTAATAATTCTGCTCATTGCTCTGTACAATGTGTTTAAATT-TATATAAGTAGCATTCAAAATATTG-AAAAGATCGTTGGATAAA----TG---------------TTTAT------AAC---------AGGAACAGTTCATACATACTATTTATATTATATGGTATTCATCTTCActatt

Unaligned ( gi|27 ): TCTTAGTACAAAAAAAAACTCTTGTTTGGTATTGATAATTGAACAGACGAAGGTAACTTAACTTTGTTTTTTAGAAGTTAAAATTATATAAAACGTTCTAGCTGTTAC
Unaligned ( gi|28 ): TTTGATATGTTATAATAAAGAAATGACTATTTTAATTTACATCGACATTGCGCACAATCAAGAAATTTGAGTGTAAGATTTCTGCTAAATTTCCTTTGCACAATG
Unaligned ( gi|31 ): GTCCCCTGTGAAGTTGACGTGTATGGAGAATGTTACGAGTGGGCATGGTGGCGGAAACCTTGAATGGCTGTCTTGTTGCGGCAACT
Unaligned ( gi|32 ): CAAGTAGTTGCATTTAATTGACAATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAT
Unaligned ( gi|35 ): TTCTCTTTAAACATATGACATTTTCATTATTTCACTATATCTCCAATATTTCTATAAAAACAGTTA
Unaligned ( gi|37 ): ATAAATTTTAAAAAGTCTAAGTTCTCCTGAATATAAATATTGGAGCGTTTTAAG
Unaligned ( gi|38 ): TAAATCTCAAAAAAAGTAAAAGTCCTGACATTTCAAT

lowQualScore                  :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       1111111111111111111111111111111111111111111111                                                                                                                                                                 1111111111111111111111111111111111111111111                                                                                           
lowQualScore                  :                                                                               1111  11                    11111           222222222   1111                                 44444444444             11                                                                                    222222222222222         11    444444444444444444        333333333333333              1111                 11111                                                                                                                                                                                                                                                     11111                                                                                                                                    5555555555555555555555555555555555555555555555                         444444444444                                             2222                                                                           5555555555555555555555555555555555555555555            44444444444                                     111                            
lowQualScore                  :                                                                   99          5555  11            1       55555         1 111111111   4444                      1    0     77777777777 0  8  22    11   2   3                  4       3     4  1            0         888    6          000000000000000 11 6    11    000000000000000000   99   444444444444444      99      2222      22  99     22222   4    88  3 1 8   2             5555   444   33  2          88888888           33         5 2 2      2 33       33     55555        2    333    4444             333               2       0     99999999                                     1    33333  3      3      0                   3                           7777                                  3                             9999999999999999999999999999999999999999999999                         111111111111                 0                           1111           0                 0           6  3  3                  1        7777777777777777777777777777777777777777777    3    3  11111111111               3                     777     2        2             
lowQualScore                  :                                                                   ..          ....  ..            .       .....         . .........   ....                      .    .     ........... .  .  ..    ..   .   .                  .       .     .  .            .         ...    .          ............... .. .    ..    ..................   ..   ...............      ..      ....      ..  ..     .....   .    ..  . . .   .             ....   ...   ..  .          ........           ..         . . .      . ..       ..     .....        .    ...    ....             ...               .       .     ........                                     .    .....  .      .      .                   .                           ....                                  .                             ..............................................                         ............                 .                           ....           .                 .           .  .  .                  .        ...........................................    .    .  ...........               .                     ...     .        .             
lowQualScore                  :                                                                   88          4444  00            0       22222         0 000000000   2222                      0    8     00000000000 6  0  00    00   0   2                  2       2     4  8            6         000    0          666666666666666 88 0    00    222222222222222222   22   333333333333333      22      1111      00  22     55555   0    77  3 0 0   9             0000   111   22  4          55555555           77         3 7 7      2 11       22     99999        1    999    7777             999               5       2     11111111                                     1    66666  6      6      1                   6                           7777                                  6                             6666666666666666666666666666666666666666666666                         000000000000                 2                           2222           8                 8           5  2  2                  0        2222222222222222222222222222222222222222222    2    2  00000000000               2                     555     0        0             
consensus                     :                                                          GTTGGGTCGAGAACGCCAGGG-TC-GT--GATGATGTTATCCTTCTCAT----NTTCTTTTTTNT----C----TTT----TTCGCTTTCTTCAATTTGAAGTATTTATTTATTNA---------TTTG-TTNNCCTC--GCCGTTTTAGTTTAATAAACGTAACACGTGACGCTGTGGGNAGGACTGTAACTAATTTTGGAATAACNTGTAGTCCAACCCATTCGCT-T---TT-CG-CNTGATTAT--TACG-C--C-GTT---------TAT--ATA----T----------GTGTGT--ATTGTA----TAATGANGCT--TGCAA-----TAA-AATA-TTA-TNA-AAT-GACAATGACAAAT----GTT---TTA--TT-AAGCAATCTA--------GGCCTCCGGCC--CATAATACA-T-A-ATTACA-T--TTATATC--ATATA-----TAGTGAAA-AGTG---ACAA----CAGTGTTACAAAT---ATAAAACGTATATTA-ATAGATAGATAAC--------AATTGATTTGCATTTGTTTACATGTTAAGTGATTGGAAAAAT-A-A-TT-TCTTTT-ATTAAATACTTCAAAAATAAATTTAC-ATAGTGTTTTTAATTTTTGTTCATTTG----TTATACTCATTAATCTGTAAAATGAATTTAAATT-TATGTTAGTAACATTCAAAATATTGAAAA---G-TATTC-----------GCTG-GTAAA-CTT-----------CATAATAGGAACATTCCATGCATAC------------ATGGTATTCATCTTCAACTTCTCCAGCTGCACAAAGTATACAAAT----TCTATCTTCGTAAGCAACATTATTGTGTCTTCCAGTTTCTANATATAATTTGTGAGCTGAGCATCTNAATTTCGC-AAA-GC--------AATTTC-----------G-----GTA--GATAAAGTAAGA-T-------T-TTTTTCAACATTTAAAAGAGATTTAAAGTTTTCATAA---TGGACGGTTTTGTGCGACTGAGAAATAT
Reference ( family-3391 )     :                                                          GTTGGGTCGAGAACGCCAGGG-TC-GT--GATGATGTTATCCTTCTCAT----NTTTTTTTTTNT----C----TTT----TTCGCTTTCTTCAATTTGAAGTATTTATTTATTAA---------TTTG-TTNNCCTC--GCCGTTTTAGTTTAATAAACGTAACACGTGACGCTGTGGGAAGAACTGTAACTAATTTTGGAATAACNTGTAGTCCAACCCATTCGCT-T---TT-CG-CNTGATTAT--TACG-C--C-GTT---------TAT--ATA----T----------GTGTGT--ATTGTA----TAATGANGCT--TGCAA-----TAA-AATA-TTA-TNA-AAT-GACAATGACAAAT----GTT---TTA--TT-AAGCAATCTA--------GGCCTCCGGCC--CATAATACA-T-A-ATTACA-T--TTATATC--ATATA-----TAGTGAAA-AGTG---ACAA----CAGTGTTACAAAT---ATAAAACGTATATTA-ATAGATAGATAAC--------AATTGATTTGCATTTGTTTACATGTTAAGTGATTGGAAAAAT-A-A-TT-TCTTTT-ATTAAATACTTCAAAAATAAATTTAC-ATAGTGTTTTTAATTTTTGTTCATTTG----TTATACTCATTAATCTGTAAAATGAATTTAAATT-TATGTTAGTAACATTCAAAATATTGAAAA---G---TTC-----------G-----------TT-----------CATAATAGGAACATTCCATGCATAC------------ATGGTATTCATCTTCAACTTCTCCAGCTGCACAAAGTATACAAAT----TCTATCTTCGTAAGCAACATTATTGTGTCTTCCAGTTTCTACATATAATTTGTGAGCTGAGCATCTNAATTTCGC-AAA-GC--------AATTTC-----------A-----GTA--GATAAAGTAAGA-T-------T-TTTTTCAACATTTAAAAGAGATTTAAAGTTTTCATAA---TGGACGGTTTTGTGCGACTGAGAAATAT
gi|1                          :                                                          GTTGGGTCGAGAATGCTAGGG-TC-GT--TATGATGTTATCCGTCTCAT----TTTTTTTTTTGT----C----TTT-------GCTTTCTTCACTATGAATTTTTAATTTATGTA---------TGTG-TTAACCCC--GCCATTT-AGTTCTATAAACGTAACACGTGGCGCTGTGGGAGCAACTGTAACTAATTATGGAATAACGTGTAGTCCAACCAATTTGCT-T---TT-TA-CTTGATTAT--TACG-C--C--TC---------TATTCACA----T----------ATGTGT--ATGGTG----TAATGAGGCT--TGCAA-----TAA-AATA-CTA-TAA-AAT-GACAATGACAAAT----GTT---TTA--AT-AAGCAATCTA--------GGCCTCCGGCC--CGTAATACA-T-A-ATTTCA-T--GTATATC--ATATA-----TAGTGAAA-AGTG---ACAA----TTGTGTTACAAAT---AGAAAACATATATCA-ATAGACAGATGAC--------AATTGATTTGCATTTGTTTGCATGCTAAGTGATTGAAAAAAT-A-A-TT-TCTTTT-ATTTATTACTTCAAAAATAAATTTAC-TTAATGTTTTTAATTTTTGTTCATTTG----TTATACCCATTAACCTGTAAAAGGAATTTAAATT-TATGTTAGTAGCATGCAAAATA----------------C-----------C-----------TT-----------CATAATAGAAGCATTCCATGCATAC------------ATGGTATTCATGTT-AAGTTCTCCAGCTGCATAAAGTGTACAAAT----TCTATCTTCGTAAGCAACATGATTGTGTCTTCCAGTTTCTACATATAATTTGTGAGCTGAGCATCTTAATTTTGCAAAA-GC--------AATTT-------------------------TAAAGTAAGA-T-------A-TTTCTCAACATTTAAAAGAGATTTGAAGTTTTTAGAA---TGGACAGTTTTGTGTGACGGAGAAATAT
gi|10                         :                                                                          CATGG-AC-GTTGGGTGATGTTATC-TTCTCAT----ATTTTTCTCTCT----C----TTTCTTTTTAGCTTTCTTCAATTTGAAGTCTTTATTTATTAAGTTTGTTTGTTTG-TTTTCTCCCTGCCATTTTAGTCTAATAAACGTAACATGTAACGCTGTTGGAAGGATTGTAACGAATTTCGGAATAACCTATATTCCAACACATAGCCT-T---TT-CA-CC--ATTAT--TATG-C--C-ACTGTCTATATATAT--ATA----T----------GTGTGT--ATTCTA----TAATGGCGTT--TTCAA-----TAC-AATA-TTA-TGA-AA
gi|11                         :                                                                                                                                                                                                                                                                                                                                                                                                                                 aatcatgAAT----GTT---TTA--AT-GAGCAATATA--------GGTCTCCAGCC--AATAATACA-T-A-ATTATA-T--TTATATC--ATATA-----TAGTGAAT-AATG---ACAA----CACTGTTACAAAT---ATTAAACGTATATTA-ATAGATAGATAAC--------AATTGATTTGTATTTGTTTAAATGTTGAGTAATTGGATAAATAA-A-TT-TCTATT-ATTTAATACTTCAAAAATAAAACGAC-ATAGACTTTTTAATTTTTGTTCATTTG----TTATACTCATTAATCTGTAAATTGAATTTAAATT-TATGTTAGTAATATTCAAAATATTGctaaac
gi|12                         :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               A-T--GTATATC--ATAAG-----TAGTGAAA-AGTG---ACAA----CAGTGTTACGAAT---ATAAAACGTTAATTG-ATAGATAGATAAC--------AATTGATTTGCATTTGTTTACATGTTAAGTGATTGGAAAAAT-A-AATT-TCTTTT-ATTAAATACTTCAAAAATAAATTAAC-ATCGTGTTTTTAGTTTTTATTCATTTG----TTATACTCATTAATCTGTAAAATGAATTTAAATT-TATGCTATTAACATTCAAAATATTGAAAA---G---
gi|13                         :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                -T--TTATATC--ATATAATTTATATTGAAT-AATG---ACAA----CACTGTTACAAAT---ATAAAACATATATTA-ATAGATAGATAAC--------AATTGATTTGCCTTTGTTTACATGTTGAGTAATTGGATAAAT-A-AATT-TCTTTT-ATTTAATACTTCAAAAATAAAATGAC-ATAGACTTTTTAATTTTTGTTCATTTG----TTATACTCATAAATCTGTAAATTGAATTTAAATT-TATGTTAATAATATTGAAAATATTatattcactccgtaaa
gi|14                         :                                                                                             tgTATTCTTCTCGT----ATCCTTATTAAT----T----TGT----TTCACTTTCTTCAATTTGAATTATTTA-TTGTTAAC--------TTTG-TTAATCTC--GCCATATTAGTTTAATAAACGTAACAAATGACGC-GTGTGTAAGACAGTAACTAATTTTGAAATAATCAGCCGTCCATCCCATTTAATGT---GT-CGTCATGTTTAA--TATG-CAAC-GTTGG-------TGT--ATGACTTT----------GTGTGT--ATTGTA----AAATG
gi|15                         :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 TTCGTAAGCAACATTATTGTGTC-------------AT-TA--TTGTTAGCTGAGCATCCTAATTTTGC-AAATGTAATACTAAAATTTC-----------AAAGGTATA--GATAAAGTAAGATT-------T-TTTTTCAACATTTAAAATAGATTTAAAGTTTTCATAA---TGGACAGTTTTGTGTGACTGAGAAATATcag
gi|16                         :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            TGCATATGTTTACATGTTAAATGATTGGAAAAAT-A-AATT-TCTTTT-ATTAAACACTTCAAAAATAAATTTAC-TTAGTGTTTTAAGTTTTTGTT-ATTTG----TTATACTCATT-ATCTGCAAAATGAATTTAAATT-TATGGTAGTAACATTCAAAATTTTAAAAA---G---ccgagcgccaatcttgtacagtacagtcaataacacgttgtttgaataatgaa
gi|17                         :                                                                                                                                                                                                                                                                                                                                                                                                   A-----TAA-AATG---A-ATA-AAT-GA--ATGACACAT----GTT---TGA--TT-AAGCAATCTA--------GGCCTCCAACCGTCAAAATGT--T-A-ATGACA-T--TTATACC--ATATA-----TAGTGAAA-TGTG---AAAA----GAGTGTTACGTAT---ATAAAACATATgtattt
gi|18                         :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             AA-AGTG---ACAA----CGGTGTTACAAAT---ATAAAACGTATATTA-ATAGATAAATAAC--------AATTATTTTGCATTTGATGACATGTctaaagtaaggagggacagagagaacgctttcacttg
gi|19                         :                                                                                                                                                                                                                                                                                                                       caatgacaaattacaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnA-AATG-TCAATGACAAT-GACAATGACAAAT----GTT---TTA--TT-AAGCAATTTA--------GG
gi|2                          :                                                                                                                                                                                                                                                                                                                                                                                    gaccttgacgtcatagttaatgtttagtttaatgacA-AAT-GACAATTACAAAT----GTT---TTA--TC-AAGCAATTTA--------GGCCTCCAGCC--TATAATACA-T-A-ATTACA-T--TTATATC--ATATA-----TAGTGAAA-AGTG---ACAA----CAGTGTTACAAAT---ATAAAATGTATATTA-ATAGATAAATAAC--------AATTGCTTTGCATTTGTTTACANNNNNNNNNNNNNNNNNNNN-N-N-NN-NNNNNN-NNNNNNNNNNNNNNNNNNNNNNNNNN-NNNNNNNNNNNNNNNNNNNNNNNNNNN----NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTAAGTTAATAACATTCAAAATATTGAAAA---GGTATTC-----------ACTGCGTAAAGCTT-----------CATAATAGGAACATTCCATGCATAC------------ATGGTATTCATCTTCAATTTCTCCAGCTGCACAAAGTATACAAAT----TCTATCTTCGTAAGCAACATTATTGTGTCTTTCAGTTTCTATATATAATTTGTGAGCTGAGCATCTAAATTTCAC-AAAAGC--------AATTTTTTAACTTTAGAG-----GTATTGATAAAGTAAGA-TATATATATATTTTTCAACATTTAA--GAGATTTAAAGTTTTCATAA---TGGACAGCTTTGTGTGACTGAGAAATATtttaatatcaacatgtatcttctattttaaacttaaatcattcaacaattacaactaagcaaaa
gi|20                         :                                                                                                                                                                                                                                                                                                                                                                                                                         -AAT-GACAATGACACAT----ATG---GTA--TT-AAGCAATTTA--------GGCCTCAGGCA--CATAAAAC------ATTACA-A--TCTTATC--ACAT------------AA-CATG---GCAA----CATTATTGCAAAT---GTAATA-G-ACATTG-TTAAATACCTAAC--------AGT
gi|21                         :                                                                                                                                                                                                                    atctttatgacaatgttaatgttGGGTAGCACTGTAACTGATGTTGAAGTAGCATGTAGACCAACCCATTCGCT-TGTGTTATG-TTTG-TTATTGTACGAA--T-GAT---------TAT--ATA----T----------ATGTATAAATTGTAAAAGTAATAATTTTTATGCAA-----CAG-AATA-TGA-TTA-AA
gi|22                         :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         CAACATTGTTGTGTGTTCAGATTTCTAAATATAATTGTTGATCCGAACATCTGAGTTTCAC-A-----------------------------------------GATA---TA----T-------T-TTTTTCAAAATGTAAAAGAGATTAAAAGTTTTCATAATTCTGGATGTTTTTGTACAGCTGAAGTATATctta
gi|23                         :                                                                                                                                                                                                                                                                                                                                                                                                                                 AATGACAAAT----CTT---TTG--TT-AAACAATCCA--------GACATTCGGCC--CGTAAT--------ATTTCATT--TTATAGT--ATATA-----TAATGAA-----------AA----CCATGATACAAAT---ATAGTACGTATCTTACATGTAT---TAACTTAATGCAAATTGATGTACA
gi|24                         :                                                                                                                                                                                                                                                                                                                                                                                                                  aaA-CAA-AGT-AAAAATGACAAATTTTTGTTAAATTAATTT-AAACAATTTT--------AATCTCTA--C--CAAAATACA-T-TTATTACA-T--TTACACC--ATGTA-----CAGTGAAA--------------------GTTTCACAT---AT----CCT-------ATAGATAGATAAA--------CATTGATTTGC
gi|25                         :                                                                                                                                                                                                                                                                                                                                                                                                                          tgT-GAAAATGATAAAT----GTT---TTA--TTCAAGTA---TA------------TCCAGCC--CAT-ACACA-TAA-ATCATG-T--TTATATCAAATCTA-----TAATGAAT-AGTGGCCACAA----CAGGGTGAAAAATGGAATGAAA
gi|26                         :                                                                                                                                                                                                                                                                                                                                                                                                                         -AAT-GACAATGGAAATT----GTT---TTA--TT-AAGCAATCTA--------GGCatta
gi|26                         :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      atggcGAAATAG-G---ACTA----CAGTGTTACAAAT---ATAAAACGTATATTA-ATATATAGATAAC--------AATTGATTTGTATTggaaataggactacagtgttacaaatataaaacgtatattaatatatagataacaattgatttgtattag
gi|29                         :                                                                                                                                                                                                                                                                                                                                                     atggcaatgacaatggaaattgttttattaagcaatctaggcgGTAA-----TAATAATA---A-TCA-CATTGACAATGACACAT----GAT---TTA--TT-CAACAATCCA--------TGTCTCCGGCC--CATAAAACATT-G-ATTGCA-TGATAATA----ATA-A-----TAATGTAA-Aag
gi|3                          :                                                                                                                                                                                                                                                                                                                                                                                                                          caT-GGCAATGAAAAAT----GTT---TTA--TT-AAGCAATCTA--------GACCTCCGGCC--CATAGTACA-T-A-ATTACA--------------------------------AGTG---ACAATGTTCAGTGCTACAAAT---ATTAAACGTATATTA-ATAGATAT-TAAC--------CATTGATTTGCATTTGTTTACATGGTATGTGATTAGAAAAAT-A-A-TT-TTTTTTTATTAAATACTTCAAAAATAAATTTAC-ATAGTGTTTTAAATTTGTGTTCATTTG----TTATACTCATTAATCTGTAAAATGAATTTAAATT-TATGTTTGTAACATTCAAAATATTGGAAA---GATATTC-----------ACTGAGTAAAGCTT-----------CATAATAAGAACATTCCATGCATAC------------ATGGTATTCATCTTCAACTTCTCCAGCTGCACAAAGTATACAAATTCTATCTATCTTCGT---CAAC
gi|30                         : ttatctttgacttttacgtacaacttttatacagtttaataaatgcccagatatatgacaatgacacGGACACAGGGG-TA-GT--GATGATGTAATTCTTCTCATATTCCTTTTTTTCTTT----C----TTT----TTCGTTTTCTTCA
gi|33                         :                                                                                                                                                                                                                                                                                                                                                                                                                                                                            gggcaagggtggcgatggtaggaaccagatagTACA-T--TTATATC--ATATA-----TAGTGAAA-AGTG---ACAA----CAGTGTTACAAAT---ATAAAACGTATATCA-AT---------AT--------AATTGATTTGg
gi|34                         :                                                                                                                                                                                                                                                                                                                                                                                                                           AT-GGCAATGACA--------TT---TCA--TT-AAGCAATTTATATCTATAGGCCTCTGGCC--CATAATTCATT-A-ATTGCA-T--T
gi|36                         :                                                                                                                                                                                                                                                                                                                                                                                                                     -TTA-AGT-GATAATGACAAAT----GTT---TTA---T-AAGCAGTCAA--------GGCATACAGTC--CATAA
gi|4                          :                                                  caaaaaacGTTGGGCCGA-AACGCCAGGGGTA-GT--GATGATGTTATCCTTCTCAT----TTTCTTTTTTAT----CTATATTC----TTCGCATTGTTCTATTTGAAGTATTTATCTATTTA---------TTTGTTTTTCCTC--
gi|4                          :                                                                                                                                                                             tcactctaaattaatatgtatatctcctttgagatgttgacgtttgaggcaaaggttatggacagggatggtatgaacctggcagtgacgttgggtcgggaaggcaggggttgcaagggtaggaaccaggcagtgacCA-C--T-GTT---------TAT--ATA----TATATGTTTGTGTGTGT--ATTGTA----TGATGAAGCT--TGTAA-----TAA-AATA-TTA-TTG-AAccacacaacaccannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntgccactgtttatatatatatgtttgtgtgtgtattgtatgatgaagcttgtaataaaatattattgaac
gi|5                          :                                                      tcactctaaattaatatgtatatctcctttgagatgttgacgtttgaggcaaaggttatggacagggatggtatgaacctggcagtgacgttgggtcgggaaggcaggggttgcaagggtaggaaccaggcagtgacgttgggccgaaacgccaggggtagtgatgatgttatccttctcattttcttttttatctatattcttcgcattgttctatttgaagtatttatctatttatttgtttttcctcccacacaacaccannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntgcTGACAAAT----GTT---TTA--TT-AAACAATCTA--------GGCTTCCGGAC--CATAATACA-T-A-ATTACA-T--TTATATC--ATATA-----TAGTGAAA-AGTG---ACAA----CAGTGTTACAAAT---ATAAAACATATATTA-ATAGATTGATAAC--------AACTAATTTACA--TG--TACATGTTAAGTGACTGGAAAAATAA-A-TT-TCTTTT--TTAAAAGCTTTAAAAACAAATTTACTTTAGTATTTTTAATTTTTGTTCATTTG----TTATACTGATTAATCTGAAAAATAAATTT--ATT-TAT-----TAACTTTCAAAATATTATAAA---GGTATTT-----------GCTGTGTAAATCTT-----------CCTAATAAGAACATTCCTTGCATAT------------ATGGTATTTATCTTCAACTTCTCCAGCTCAACAAAGTATACAAAT----TCTATCTTCGTAAGCAACATTATTGTTTCTTCCAGTc
gi|6                          :                                                                                                                                                                                                                                                                                                                                                                    aaatgtTTGTT----TAGTGAATCT--GGCAAGTCGTTAA-------TA-TGACAAT-GACAAAGACAAAT----GTT---TTA--TT-AAGCAATCTA--------GACATACGGTC--CATTATACA-T-A-ATTACA-T--ATATATC--ATATA-----TTGTGAAA-AGTG---ACAA----CAGTGTTACAAAT---ATAAAACGTATATTA-CTAGATAGATAAC--------AAATGATTTACATTTATATACATGTTAAGTGATTGGAAAAAT-ACA-TT-TCTTTT-ATTAGATACTTCAAAAATAAATTTAC-ATTGTGTTTTTAATATTTGTTCATTTG----TTATATTCATTAATCTGTAAAATGAATTTGAATT-AATGTTAGT-ACATTCAAAATATTGAAAAAGTA---TTCATTGCGTAAATA-----------TT-----------CATGAAAGGAACATTCCATG
gi|7                          :                                                                                                                                                                                                                                                                                                                                                                                                          AA-AATAGTTA-TGACAAT-GACAATGACAAAT----GTT---TTA--TT-AAGCAATTTA--------GGCCTCCG-CC--TATAATACA-T-A-ATTACA-T--TTATATC--ATATA-----TAGTGAAA-AGTG---ACAA----CAGTGTTACAAAT---ATAAAACGTTTATTA-ATAGATAAATAAC--------AATTGCTTTGCATTTGTTTACATGTTTAGTGATTGGAAAAATAA-A-TT-TCTTTT-ATTAAA---TTCAAAAATAAATTTGC-ATAGTGTTTTTAGTTTTTGTTCATTTG----TTATACTCATTAATCTGTAAAATGAATTTGAATT-TATGTTAGTAACATTCAAAATATTGA
gi|8                          : ttatccttgaaaacacatgacattttcattatttcactatatctacaatatttctataTTGGGTCG-GAACGGCAGGG-TTAGT--GATGATGTTATTTTTCTCAT----ATTCTTTTTTCTTCCTC----TTT----TTCGCTTTCTTCAATTTGAAGTATTCATATGTT-----------------TCCCCTC--GCTGTTTTAGTTTAATAAACGTAACATGTAACGCTGTGGGGAGAACTGTAACTAATGTTGGAAAAA-----AG--CAATTGTTT--TT-T---TT-TT-CATGATTAT--TATG-C--CAGTT---------TAT--ATA----T----------GTGTGT--ATTGTA----TAATGAAACT--TGCAA-----TAA-AATA-TTA-TTA-AAta
gi|9                          :                                                                                                                                                                                                                                                                                                                                                                                                  actctaaatcaatatgtacatgtcccctgagatgatgacgttcgaggttcaggttatgggaaggggtggcgacgataggaaccatgcaggggtaATGCA-T-A-ATTGCA-T--GTGTCTT--ATATA-----TAGTGAAA-AGTG---ATAA----ATGTGTTACAAAT---ATAAAACACATGTTA-ATAGATAAAAAAC--------AATTAATGTGCATTTGTTTACATATTAAGTGGTTGGA----------TTGTTTTTT-ATTAAATACTT---AAATAA-TTTGC-AATTTATTTTTAATTTTTGTTCATGTAATAATTCTGCTCATTGCTCTGTACAATGTGTTTAAATT-TATATAAGTAGCATTCAAAATATTGAAAA---G---ATC-----------G-----------TTGGATAAATGTTTATAACAGGAACAGTTCATACATACTATTTATATTATATGGTATTCATCTTCActatt

Unaligned ( gi|27 ): TCTTAGTACAAAAAAAAACTCTTGTTTGGTATTGATAATTGAACAGACGAAGGTAACTTAACTTTGTTTTTTAGAAGTTAAAATTATATAAAACGTTCTAGCTGTTAC
Unaligned ( gi|28 ): TTTGATATGTTATAATAAAGAAATGACTATTTTAATTTACATCGACATTGCGCACAATCAAGAAATTTGAGTGTAAGATTTCTGCTAAATTTCCTTTGCACAATG
Unaligned ( gi|31 ): GTCCCCTGTGAAGTTGACGTGTATGGAGAATGTTACGAGTGGGCATGGTGGCGGAAACCTTGAATGGCTGTCTTGTTGCGGCAACT
Unaligned ( gi|32 ): CAAGTAGTTGCATTTAATTGACAATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAT
Unaligned ( gi|35 ): TTCTCTTTAAACATATGACATTTTCATTATTTCACTATATCTCCAATATTTCTATAAAAACAGTTA
Unaligned ( gi|37 ): ATAAATTTTAAAAAGTCTAAGTTCTCCTGAATATAAATATTGGAGCGTTTTAAG
Unaligned ( gi|38 ): TAAATCTCAAAAAAAGTAAAAGTCCTGACATTTCAAT

lowQualScore                  :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 1111111111111111111111111111111111111111                                                                                           
lowQualScore                  :                                                                               1111  11                        1111        222222222   1111                                 44444444444             11                                                                                    222222222222222         11    444444444444444444        333333333333333              1111                 11111                                                                                                                                                                                                                                                     11111                                                                                                                                      11       222222222222                           444444444444                                             2222                                                                           5555555555555555555555555555555555555555            44444444444                                     111                            
lowQualScore                  :                                                                   99          5555  11            1       1   4444      1 111111111   4444                      1    0     44444444444 0  8  22    11   2   3                  4       3     1  1            0         888    6          000000000000000 11 6    11    000000000000000000   99   444444444444444      99      2222      22  99     22222   4    88  3 1 8   2             5555   444   33  2          88888888           33         5 2 2      2 33       33     55555        2    333    4444             333               2       0     99999999                                     1    77777  3            0                   3                           7777                                  3                         8    5 55  0 2  888888888888                           111111111111                 0                           1111           0                 0           4  3  3                  1        5555555555555555555555555555555555555555    3    3  11111111111               3                     777     2        2             
lowQualScore                  :                                                                   ..          ....  ..            .       .   ....      . .........   ....                      .    .     ........... .  .  ..    ..   .   .                  .       .     .  .            .         ...    .          ............... .. .    ..    ..................   ..   ...............      ..      ....      ..  ..     .....   .    ..  . . .   .             ....   ...   ..  .          ........           ..         . . .      . ..       ..     .....        .    ...    ....             ...               .       .     ........                                     .    .....  .            .                   .                           ....                                  .                         .    . ..  . .  ............                           ............                 .                           ....           .                 .           .  .  .                  .        ........................................    .    .  ...........               .                     ...     .        .             
lowQualScore                  :                                                                   88          4444  00            0       0   2222      0 000000000   2222                      0    8     66666666666 6  0  00    00   0   2                  2       2     0  4            6         000    0          666666666666666 88 0    00    222222222222222222   22   333333333333333      22      1111      00  22     55555   0    77  3 0 0   9             0000   111   22  4          55555555           77         3 7 7      2 11       22     99999        1    999    7777             999               5       2     11111111                                     1    33333  6            1                   6                           7777                                  6                         0    0 11  1 7  555555555555                           000000000000                 2                           2222           8                 8           5  2  2                  0        2222222222222222222222222222222222222222    2    2  00000000000               2                     555     0        0             
consensus                     :                                                          GTTGGGTCGAGAACGCCAGGG-TC-GT--GATGATGTTATCCTTCTCATATTC----TTTTTTNT----C----TTT----TTCGCTTTCTTCAATTTGAAGTATTTATTTATTNA---------TTTG-TTNNCCTC--GCCGTTTTAGTTTAATAAACGTAACACGTGACGCTGTGGGNAGGACTGTAACTAATTTTGGAATAACNTGTAGTCCAACCCATTCGCT-T---TT-CG-CNTGATTAT--TACG-C--C-GTT---------TAT--ATA----T----------GTGTGT--ATTGTA----TAATGANGCT--TGCAA-----TAA-AATA-TTA-TNA-AAT-GACAATGACAAAT----GTT---TTA--TT-AAGCAATCTA--------GGCCTCCGGCC--CATAATACA-T-A-ATTACA-T--TTATATC--ATATA-----TAGTGAAA-AGTG---ACAA----CAGTGTTACAAAT---ATAAAACGTATATTA-ATAGATAGATAAC--------AATTGATTTGCATTTGTTTACATGTTAAGTGATTGGAAAAAT-A-A-TT-TCTTTTATTAAATACTTCAAAAATAAATTTAC-ATAGTGTTTTTAATTTTTGTTCATTTG----TTATACTCATTAATCTGTAAAATGAATTTAAATT-TATGTTAGTAACATTCAAAATATTG-AAAA-G-TATTCGCT-G-G-TAAA-C-TTCATAATAGGAACATTCCATGCATAC------------ATGGTATTCATCTTCAACTTCTCCAGCTGCACAAAGTATACAAAT----TCTATCTTCGTAAGCAACATTATTGTGTCTTCCAGTTTCTANATATAATTTGTGAGCTGAGCATCTNAATTTCGC-AAA-GC--------AATTTC--A--------GG--TA--GATAAAGTAAGA-T-------T-TTTTTCAACATTTAAAAGAGATTTAAAGTTTTCATAA---TGGACGGTTTTGTGCGACTGAGAAATAT
Reference ( family-3391 )     :                                                          GTTGGGTCGAGAACGCCAGGG-TC-GT--GATGATGTTATCCTTCTCATNTTC----TTTTTTNT----C----TTT----TTCGCTTTCTTCAATTTGAAGTATTTATTTATTNA---------TTTG-TTNNCCTC--GCCGTTTTAGTTTAATAAACGTAACACGTGACGCTGTGGGNAGGACTGTAACTAATTTTGGAATAACNTGTAGTCCAACCCATTCGCT-T---TT-CG-CNTGATTAT--TACG-C--C-GTT---------TAT--ATA----T----------GTGTGT--ATTGTA----TAATGANGCT--TGCAA-----TAA-AATA-TTA-TNA-AAT-GACAATGACAAAT----GTT---TTA--TT-AAGCAATCTA--------GGCCTCCGGCC--CATAATACA-T-A-ATTACA-T--TTATATC--ATATA-----TAGTGAAA-AGTG---ACAA----CAGTGTTACAAAT---ATAAAACGTATATTA-ATAGATAGATAAC--------AATTGATTTGCATTTGTTTACATGTTAAGTGATTGGAAAAAT-A-A-TT-TCTTTTATTAAATACTTCAAAAATAAATTTAC-ATAGTGTTTTTAATTTTTGTTCATTTG----TTATACTCATTAATCTGTAAAATGAATTTAAATT-TATGTTAGTAACATTCAAAATATTG-AAAA-G-TATTCGCT-G-G-TAAA-C-TTCATAATAGGAACATTCCATGCATAC------------ATGGTATTCATCTTCAACTTCTCCAGCTGCACAAAGTATACAAAT----TCTATCTTCGTAAGCAACATTATTGTGTCTTCCAGTTTCTANATATAATTTGTGAGCTGAGCATCTNAATTTCGC-AAA-GC--------AATTTC-----------GG--TA--GATAAAGTAAGA-T-------T-TTTTTCAACATTTAAAAGAGATTTAAAGTTTTCATAA---TGGACGGTTTTGTGCGACTGAGAAATAT
gi|1                          :                                                          GTTGGGTCGAGAATGCTAGGG-TC-GT--TATGATGTTATCCGTCTCATTTTT----TTTTTTGT----C----TTT-------GCTTTCTTCACTATGAATTTTTAATTTATGTA---------TGTG-TTAACCCC--GCCATTT-AGTTCTATAAACGTAACACGTGGCGCTGTGGGAGCAACTGTAACTAATTATGGAATAACGTGTAGTCCAACCAATTTGCT-T---TT-TA-CTTGATTAT--TACG-C--C--TC---------TATTCACA----T----------ATGTGT--ATGGTG----TAATGAGGCT--TGCAA-----TAA-AATA-CTA-TAA-AAT-GACAATGACAAAT----GTT---TTA--AT-AAGCAATCTA--------GGCCTCCGGCC--CGTAATACA-T-A-ATTTCA-T--GTATATC--ATATA-----TAGTGAAA-AGTG---ACAA----TTGTGTTACAAAT---AGAAAACATATATCA-ATAGACAGATGAC--------AATTGATTTGCATTTGTTTGCATGCTAAGTGATTGAAAAAAT-A-A-TT-TCTTTTATTTATTACTTCAAAAATAAATTTAC-TTAATGTTTTTAATTTTTGTTCATTTG----TTATACCCATTAACCTGTAAAAGGAATTTAAATT-TATGTTAGTAGCATGCAAAATAC----------------------------C-TTCATAATAGAAGCATTCCATGCATAC------------ATGGTATTCATGTT-AAGTTCTCCAGCTGCATAAAGTGTACAAAT----TCTATCTTCGTAAGCAACATGATTGTGTCTTCCAGTTTCTACATATAATTTGTGAGCTGAGCATCTTAATTTTGCAAAA-GC--------AATTT----------------------TAAAGTAAGA-T-------A-TTTCTCAACATTTAAAAGAGATTTGAAGTTTTTAGAA---TGGACAGTTTTGTGTGACGGAGAAATAT
gi|10                         :                                                                          CATGG-AC-GTTGGGTGATGTTATC-TTCTCATATTT----TTCTCTCT----C----TTTCTTTTTAGCTTTCTTCAATTTGAAGTCTTTATTTATTAAGTTTGTTTGTTTG-TTTTCTCCCTGCCATTTTAGTCTAATAAACGTAACATGTAACGCTGTTGGAAGGATTGTAACGAATTTCGGAATAACCTATATTCCAACACATAGCCT-T---TT-CA-CC--ATTAT--TATG-C--C-ACTGTCTATATATAT--ATA----T----------GTGTGT--ATTCTA----TAATGGCGTT--TTCAA-----TAC-AATA-TTA-TGA-AA
gi|11                         :                                                                                                                                                                                                                                                                                                                                                                                                                                 aatcatgAAT----GTT---TTA--AT-GAGCAATATA--------GGTCTCCAGCC--AATAATACA-T-A-ATTATA-T--TTATATC--ATATA-----TAGTGAAT-AATG---ACAA----CACTGTTACAAAT---ATTAAACGTATATTA-ATAGATAGATAAC--------AATTGATTTGTATTTGTTTAAATGTTGAGTAATTGGATAAATAA-A-TT-TCTATTATTTAATACTTCAAAAATAAAACGAC-ATAGACTTTTTAATTTTTGTTCATTTG----TTATACTCATTAATCTGTAAATTGAATTTAAATT-TATGTTAGTAATATTCAAAATATTG-ctaaac
gi|12                         :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               A-T--GTATATC--ATAAG-----TAGTGAAA-AGTG---ACAA----CAGTGTTACGAAT---ATAAAACGTTAATTG-ATAGATAGATAAC--------AATTGATTTGCATTTGTTTACATGTTAAGTGATTGGAAAAAT-A-AATT-TCTTTTATTAAATACTTCAAAAATAAATTAAC-ATCGTGTTTTTAGTTTTTATTCATTTG----TTATACTCATTAATCTGTAAAATGAATTTAAATT-TATGCTATTAACATTCAAAATATTG-AAAA-GATATTCACTCC-G-TAAA-
gi|13                         :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                -T--TTATATC--ATATAATTTATATTGAAT-AATG---ACAA----CACTGTTACAAAT---ATAAAACATATATTA-ATAGATAGATAAC--------AATTGATTTGCCTTTGTTTACATGTTGAGTAATTGGATAAAT-A-AATT-TCTTTTATTTAATACTTCAAAAATAAAATGAC-ATAGACTTTTTAATTTTTGTTCATTTG----TTATACTCATAAATCTGTAAATTGAATTTAAATT-TATGTTAATAATATTGAAAATATT
gi|14                         :                                                                                             tgTATTCTTCTCGTATCC----TTATTAAT----T----TGT----TTCACTTTCTTCAATTTGAATTATTTA-TTGTTAAC--------TTTG-TTAATCTC--GCCATATTAGTTTAATAAACGTAACAAATGACGC-GTGTGTAAGACAGTAACTAATTTTGAAATAATCAGCCGTCCATCCCATTTAATGT---GT-CGTCATGTTTAA--TATG-CAAC-GTTGG-------TGT--ATGACTTT----------GTGTGT--ATTGTA----AAATG
gi|15                         :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            TTCGTAAGCAACATTATTGTGTC-------------AT-TA--TTGTTAGCTGAGCATCCTAATTTTGC-AAATGTAATACTAAAATTTCAAA--------GGTATA--GATAAAGTAAGATT-------T-TTTTTCAACATTTAAAATAGATTTAAAGTTTTCATAA---TGGACAGTTTTGTGTGACTGAGAAATATcag
gi|16                         :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            TGCATATGTTTACATGTTAAATGATTGGAAAAAT-A-AATT-TCTTTTATTAAACACTTCAAAAATAAATTTAC-TTAGTGTTTTAAGTTTTTGTT-ATTTG----TTATACTCATT-ATCTGCAAAATGAATTTAAATT-TATGGTAGTAACATTCAAAATTTTA-AAAAGG-TATTccgagcgccaatcttgtacagtacagtcaataacacgttgtttgaataatgaa
gi|17                         :                                                                                                                                                                                                                                                                                                                                                                                                   A-----TAA-AATG---A-ATA-AAT-GA--ATGACACAT----GTT---TGA--TT-AAGCAATCTA--------GGCCTCCAACCGTCAAAATGT--T-A-ATGACA-T--TTATACC--ATATA-----TAGTGAAA-TGTG---AAAA----GAGTGTTACGTAT---ATAAAACATATt
gi|18                         :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             AA-AGTG---ACAA----CGGTGTTACAAAT---ATAAAACGTATATTA-ATAGATAAATAAC--------AATTATTTTGCATTTGATGACATGTctaaagtaaggagggacagagagaacgctttcacttg
gi|19                         :                                                                                                                                                                                                                                                                                                                       caatgacaaattacaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnA-AATG-TCAATGACAAT-GACAATGACAAAT----GTT---TTA--TT-AAGCAATTTA--------GG
gi|2                          :                                                                                                                                                                                                                                                                                                                                                                                    gaccttgacgtcatagttaatgtttagtttaatgacA-AAT-GACAATTACAAAT----GTT---TTA--TC-AAGCAATTTA--------GGCCTCCAGCC--TATAATACA-T-A-ATTACA-T--TTATATC--ATATA-----TAGTGAAA-AGTG---ACAA----CAGTGTTACAAAT---ATAAAATGTATATTA-ATAGATAAATAAC--------AATTGCTTTGCATTTGTTTACANNNNNNNNNNNNNNNNNNNN-N-N-NN-NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-NNNNNNNNNNNNNNNNNNNNNNNNNNN----NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTAAGTTAATAACATTCAAAATATTG-AAAA-GGTATTCACT-GCG-TAAAGC-TTCATAATAGGAACATTCCATGCATAC------------ATGGTATTCATCTTCAATTTCTCCAGCTGCACAAAGTATACAAAT----TCTATCTTCGTAAGCAACATTATTGTGTCTTTCAGTTTCTATATATAATTTGTGAGCTGAGCATCTAAATTTCAC-AAAAGC--------AATTTTTTAACTTTAGAGG--TATTGATAAAGTAAGA-TATATATATATTTTTCAACATTTAA--GAGATTTAAAGTTTTCATAA---TGGACAGCTTTGTGTGACTGAGAAATATtttaatatcaacatgtatcttctattttaaacttaaatcattcaacaattacaactaagcaaaa
gi|20                         :                                                                                                                                                                                                                                                                                                                                                                                                                         -AAT-GACAATGACACAT----ATG---GTA--TT-AAGCAATTTA--------GGCCTCAGGCA--CATAAAAC------ATTACA-A--TCTTATC--ACAT------------AA-CATG---GCAA----CATTATTGCAAAT---GTAATA-G-ACATTG-TTAAATACCTAAC--------AGT
gi|21                         :                                                                                                                                                                                                                    atctttatgacaatgttaatgttGGGTAGCACTGTAACTGATGTTGAAGTAGCATGTAGACCAACCCATTCGCT-TGTGTTATG-TTTG-TTATTGTACGAA--T-GAT---------TAT--ATA----T----------ATGTATAAATTGTAAAAGTAATAATTTTTATGCAA-----CAG-AATA-TGA-TTA-AA
gi|22                         :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    CAACATTGTTGTGTGTTCAGATTTCTAAATATAATTGTTGATCCGAACATCTGAGTTTCAC-A--------------------------------------GATA---TA----T-------T-TTTTTCAAAATGTAAAAGAGATTAAAAGTTTTCATAATTCTGGATGTTTTTGTACAGCTGAAGTATATctta
gi|23                         :                                                                                                                                                                                                                                                                                                                                                                                                                                 AATGACAAAT----CTT---TTG--TT-AAACAATCCA--------GACATTCGGCC--CGTAAT--------ATTTCATT--TTATAGT--ATATA-----TAATGAA-----------AA----CCATGATACAAAT---ATAGTACGTATCTTACATGTAT---TAACTTAATGCAAATTGATGTACA
gi|24                         :                                                                                                                                                                                                                                                                                                                                                                                                                  aaA-CAA-AGT-AAAAATGACAAATTTTTGTTAAATTAATTT-AAACAATTTT--------AATCTCTA--C--CAAAATACA-T-TTATTACA-T--TTACACC--ATGTA-----CAGTGAAA--------------------GTTTCACAT---AT----CCT-------ATAGATAGATAAA--------CATTGATTTGC
gi|25                         :                                                                                                                                                                                                                                                                                                                                                                                                                          tgT-GAAAATGATAAAT----GTT---TTA--TTCAAGTA---TA------------TCCAGCC--CAT-ACACA-TAA-ATCATG-T--TTATATCAAATCTA-----TAATGAAT-AGTGGCCACAA----CAGGGTGAAAAATGGAATGAAA
gi|26                         :                                                                                                                                                                                                                                                                                                                                                                                                                         -AAT-GACAATGGAAATT----GTT---TTA--TT-AAGCAATCTA--------GGCatta
gi|26                         :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      atggcGAAATAG-G---ACTA----CAGTGTTACAAAT---ATAAAACGTATATTA-ATATATAGATAAC--------AATTGATTTGTATTggaaataggactacagtgttacaaatataaaacgtatattaatatatagataacaattgatttgtattag
gi|29                         :                                                                                                                                                                                                                                                                                                                                                     atggcaatgacaatggaaattgttttattaagcaatctaggcgGTAA-----TAATAATA---A-TCA-CATTGACAATGACACAT----GAT---TTA--TT-CAACAATCCA--------TGTCTCCGGCC--CATAAAACATT-G-ATTGCA-TGATAATA----ATA-A-----TAATGTAA-Aag
gi|3                          :                                                                                                                                                                                                                                                                                                                                                                                                                          caT-GGCAATGAAAAAT----GTT---TTA--TT-AAGCAATCTA--------GACCTCCGGCC--CATAGTACA-T-A-ATTACA--------------------------------AGTG---ACAATGTTCAGTGCTACAAAT---ATTAAACGTATATTA-ATAGATAT-TAAC--------CATTGATTTGCATTTGTTTACATGGTATGTGATTAGAAAAAT-A-ATTT-TTTTTTATTAAATACTTCAAAAATAAATTTAC-ATAGTGTTTTAAATTTGTGTTCATTTG----TTATACTCATTAATCTGTAAAATGAATTTAAATT-TATGTTTGTAACATTCAAAATATTG-GAAA-GATATTCACT-GAG-TAAAGC-TTCATAATAAGAACATTCCATGCATAC------------ATGGTATTCATCTTCAACTTCTCCAGCTGCACAAAGTATACAAATTCTATCTATCTTCGT---CAAC
gi|30                         : ttatctttgacttttacgtacaacttttatacagtttaataaatgcccagatatatgacaatgacacGGACACAGGGG-TA-GT--GATGATGTAATTCTTCTCATATTCCTTTTTTTCTTT----C----TTT----TTCGTTTTCTTCA
gi|33                         :                                                                                                                                                                                                                                                                                                                                                                                                                                                                            gggcaagggtggcgatggtaggaaccagatagTACA-T--TTATATC--ATATA-----TAGTGAAA-AGTG---ACAA----CAGTGTTACAAAT---ATAAAACGTATATCA-AT---------AT--------AATTGATTTGg
gi|34                         :                                                                                                                                                                                                                                                                                                                                                                                                                           AT-GGCAATGACA--------TT---TCA--TT-AAGCAATTTATATCTATAGGCCTCTGGCC--CATAATTCATT-A-ATTGCA-T--T
gi|36                         :                                                                                                                                                                                                                                                                                                                                                                                                                     -TTA-AGT-GATAATGACAAAT----GTT---TTA---T-AAGCAGTCAA--------GGCATACAGTC--CATAA
gi|4                          :                                                  caaaaaacGTTGGGCCGA-AACGCCAGGGGTA-GT--GATGATGTTATCCTTCTCATTTTC----TTTTTTAT----CTATATTC----TTCGCATTGTTCTATTTGAAGTATTTATCTATTTA---------TTTGTTTTTCCTC--
gi|4                          :                                                                                                                                                                             tcactctaaattaatatgtatatctcctttgagatgttgacgtttgaggcaaaggttatggacagggatggtatgaacctggcagtgacgttgggtcgggaaggcaggggttgcaagggtaggaaccaggcagtgacCA-C--T-GTT---------TAT--ATA----TATATGTTTGTGTGTGT--ATTGTA----TGATGAAGCT--TGTAA-----TAA-AATA-TTA-TTG-AAccacacaacaccannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntgccactgtttatatatatatgtttgtgtgtgtattgtatgatgaagcttgtaataaaatattattgaac
gi|5                          :                                                      tcactctaaattaatatgtatatctcctttgagatgttgacgtttgaggcaaaggttatggacagggatggtatgaacctggcagtgacgttgggtcgggaaggcaggggttgcaagggtaggaaccaggcagtgacgttgggccgaaacgccaggggtagtgatgatgttatccttctcattttcttttttatctatattcttcgcattgttctatttgaagtatttatctatttatttgtttttcctcccacacaacaccannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntgcTGACAAAT----GTT---TTA--TT-AAACAATCTA--------GGCTTCCGGAC--CATAATACA-T-A-ATTACA-T--TTATATC--ATATA-----TAGTGAAA-AGTG---ACAA----CAGTGTTACAAAT---ATAAAACATATATTA-ATAGATTGATAAC--------AACTAATTTACA--TG--TACATGTTAAGTGACTGGAAAAATAA-A-TT-TCTTTT-TTAAAAGCTTTAAAAACAAATTTACTTTAGTATTTTTAATTTTTGTTCATTTG----TTATACTGATTAATCTGAAAAATAAATTT--ATT-TAT-----TAACTTTCAAAATATTATAAAG-G-TATTTGCT-GTG-TAAATC-TTCCTAATAAGAACATTCCTTGCATAT------------ATGGTATTTATCTTCAACTTCTCCAGCTCAACAAAGTATACAAAT----TCTATCTTCGTAAGCAACATTATTGTTTCTTCCAGTc
gi|6                          :                                                                                                                                                                                                                                                                                                                                                                    aaatgtTTGTT----TAGTGAATCT--GGCAAGTCGTTAA-------TA-TGACAAT-GACAAAGACAAAT----GTT---TTA--TT-AAGCAATCTA--------GACATACGGTC--CATTATACA-T-A-ATTACA-T--ATATATC--ATATA-----TTGTGAAA-AGTG---ACAA----CAGTGTTACAAAT---ATAAAACGTATATTA-CTAGATAGATAAC--------AAATGATTTACATTTATATACATGTTAAGTGATTGGAAAAAT-ACA-TT-TCTTTTATTAGATACTTCAAAAATAAATTTAC-ATTGTGTTTTTAATATTTGTTCATTTG----TTATATTCATTAATCTGTAAAATGAATTTGAATT-AATGTTAGT-ACATTCAAAATATTGAAAAA-G-TATTCATT-GCG-TAAA-TATTCATGAAAGGAACATTCCATG
gi|7                          :                                                                                                                                                                                                                                                                                                                                                                                                          AA-AATAGTTA-TGACAAT-GACAATGACAAAT----GTT---TTA--TT-AAGCAATTTA--------GGCCTCCG-CC--TATAATACA-T-A-ATTACA-T--TTATATC--ATATA-----TAGTGAAA-AGTG---ACAA----CAGTGTTACAAAT---ATAAAACGTTTATTA-ATAGATAAATAAC--------AATTGCTTTGCATTTGTTTACATGTTTAGTGATTGGAAAAATAA-A-TT-TCTTTTATTAAA---TTCAAAAATAAATTTGC-ATAGTGTTTTTAGTTTTTGTTCATTTG----TTATACTCATTAATCTGTAAAATGAATTTGAATT-TATGTTAGTAACATTCAAAATATTG-A
gi|8                          : ttatccttgaaaacacatgacattttcattatttcactatatctacaatatttctataTTGGGTCG-GAACGGCAGGG-TTAGT--GATGATGTTATTTTTCTCATATTC----TTTTTTCTTCCTC----TTT----TTCGCTTTCTTCAATTTGAAGTATTCATATGTT-----------------TCCCCTC--GCTGTTTTAGTTTAATAAACGTAACATGTAACGCTGTGGGGAGAACTGTAACTAATGTTGGAAAAA-----AG--CAATTGTTT--TT-T---TT-TT-CATGATTAT--TATG-C--CAGTT---------TAT--ATA----T----------GTGTGT--ATTGTA----TAATGAAACT--TGCAA-----TAA-AATA-TTA-TTA-AAta
gi|9                          :                                                                                                                                                                                                                                                                                                                                                                                                  actctaaatcaatatgtacatgtcccctgagatgatgacgttcgaggttcaggttatgggaaggggtggcgacgataggaaccatgcaggggtaATGCA-T-A-ATTGCA-T--GTGTCTT--ATATA-----TAGTGAAA-AGTG---ATAA----ATGTGTTACAAAT---ATAAAACACATGTTA-ATAGATAAAAAAC--------AATTAATGTGCATTTGTTTACATATTAAGTGGTTGGA----------TTGTTTTTTATTAAATACTT---AAATAA-TTTGC-AATTTATTTTTAATTTTTGTTCATGTAATAATTCTGCTCATTGCTCTGTACAATGTGTTTAAATT-TATATAAGTAGCATTCAAAATATTG-AAAA-G--AT-CGTT-G-GATAAA-TGTTTATAACAGGAACAGTTCATACATACTATTTATATTATATGGTATTCATCTTCActatt

Unaligned ( gi|27 ): TCTTAGTACAAAAAAAAACTCTTGTTTGGTATTGATAATTGAACAGACGAAGGTAACTTAACTTTGTTTTTTAGAAGTTAAAATTATATAAAACGTTCTAGCTGTTAC
Unaligned ( gi|28 ): TTTGATATGTTATAATAAAGAAATGACTATTTTAATTTACATCGACATTGCGCACAATCAAGAAATTTGAGTGTAAGATTTCTGCTAAATTTCCTTTGCACAATG
Unaligned ( gi|31 ): GTCCCCTGTGAAGTTGACGTGTATGGAGAATGTTACGAGTGGGCATGGTGGCGGAAACCTTGAATGGCTGTCTTGTTGCGGCAACT
Unaligned ( gi|32 ): CAAGTAGTTGCATTTAATTGACAATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAT
Unaligned ( gi|35 ): TTCTCTTTAAACATATGACATTTTCATTATTTCACTATATCTCCAATATTTCTATAAAAACAGTTA
Unaligned ( gi|37 ): ATAAATTTTAAAAAGTCTAAGTTCTCCTGAATATAAATATTGGAGCGTTTTAAG
Unaligned ( gi|38 ): TAAATCTCAAAAAAAGTAAAAGTCCTGACATTTCAAT

lowQualScore                  :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 1111111111111111111111111111111111111111                                                                                           
lowQualScore                  :                                                                               1111  11                        1111        222222222   1111                                 44444444444             11                                                                                    222222222222222         11    444444444444444444        333333333333333              1111                 11111                                                                                                                                                                                                                                                     11111                                                                                                                                      11       222222222222                           444444444444                                             2222                                                                           5555555555555555555555555555555555555555            44444444444                                     111                            
lowQualScore                  :                                                                   99          5555  11            1           4444      1 111111111   4444                      1    0     44444444444 0  8  22    11   2   3                  4       3     1  1            0         888    6          000000000000000 11 6    11    000000000000000000   99   444444444444444      99      2222      22  99     22222   4    88  3 1 8   2             5555   444   33  2          88888888           33         5 2 2      2 33       33     55555        2    333    4444             333               2       0     99999999                                     1    77777  3            0                   3                           7777                                  3                         8    5 55  0 2  888888888888                           111111111111                 0                           1111           0                 0           4  3  3                  1        0000000000000000000000000000000000000000    3    3  11111111111               3                     777     2        2             
lowQualScore                  :                                                                   ..          ....  ..            .           ....      . .........   ....                      .    .     ........... .  .  ..    ..   .   .                  .       .     .  .            .         ...    .          ............... .. .    ..    ..................   ..   ...............      ..      ....      ..  ..     .....   .    ..  . . .   .             ....   ...   ..  .          ........           ..         . . .      . ..       ..     .....        .    ...    ....             ...               .       .     ........                                     .    .....  .            .                   .                           ....                                  .                         .    . ..  . .  ............                           ............                 .                           ....           .                 .           .  .  .                  .        ........................................    .    .  ...........               .                     ...     .        .             
lowQualScore                  :                                                                   88          4444  00            0           2222      0 000000000   2222                      0    8     66666666666 6  0  00    00   0   2                  2       2     0  4            6         000    0          666666666666666 88 0    00    222222222222222222   22   333333333333333      22      1111      00  22     55555   0    77  3 0 0   9             0000   111   22  4          55555555           77         3 7 7      2 11       22     99999        1    999    7777             999               5       2     11111111                                     1    33333  6            1                   6                           7777                                  6                         0    0 11  1 7  555555555555                           000000000000                 2                           2222           8                 8           5  2  2                  0        8888888888888888888888888888888888888888    2    2  00000000000               2                     555     0        0             
consensus                     :                                                          GTTGGGTCGAGAACGCCAGGG-TC-GT--GATGATGTTATCCTTCTCATATTC----TTTTTTNT----C----TTT----TTCGCTTTCTTCAATTTGAAGTATTTATTTATTNA---------TTTG-TTNNCCTC--GCCGTTTTAGTTTAATAAACGTAACACGTGACGCTGTGGGNAGGACTGTAACTAATTTTGGAATAACNTGTAGTCCAACCCATTCGCT-T---TT-CG-CNTGATTAT--TACG-C--C-GTT---------TAT--ATA----T----------GTGTGT--ATTGTA----TAATGANGCT--TGCAA-----TAA-AATA-TTA-TNA-AAT-GACAATGACAAAT----GTT---TTA--TT-AAGCAATCTA--------GGCCTCCGGCC--CATAATACA-T-A-ATTACA-T--TTATATC--ATATA-----TAGTGAAA-AGTG---ACAA----CAGTGTTACAAAT---ATAAAACGTATATTA-ATAGATAGATAAC--------AATTGATTTGCATTTGTTTACATGTTAAGTGATTGGAAAAAT-A-A-TT-TCTTTTATTAAATACTTCAAAAATAAATTTAC-ATAGTGTTTTTAATTTTTGTTCATTTG----TTATACTCATTAATCTGTAAAATGAATTTAAATT-TATGTTAGTAACATTCAAAATATTG-AAAA-G-TATTCGCT-G-G-TAAA-C-TTCATAATAGGAACATTCCATGCATAC------------ATGGTATTCATCTTCAACTTCTCCAGCTGCACAAAGTATACAAAT----TCTATCTTCGTAAGCAACATTATTGTGTCTTCCAGTTTCTANATATAATTTGTGAGCTGAGCATCTNAATTTCGC-AAA-GC--------AATTTC----------AGG--TA--GATAAAGTAAGA-T-------T-TTTTTCAACATTTAAAAGAGATTTAAAGTTTTCATAA---TGGACGGTTTTGTGCGACTGAGAAATAT
Reference ( family-3391 )     :                                                          GTTGGGTCGAGAACGCCAGGG-TC-GT--GATGATGTTATCCTTCTCATATTC----TTTTTTNT----C----TTT----TTCGCTTTCTTCAATTTGAAGTATTTATTTATTNA---------TTTG-TTNNCCTC--GCCGTTTTAGTTTAATAAACGTAACACGTGACGCTGTGGGNAGGACTGTAACTAATTTTGGAATAACNTGTAGTCCAACCCATTCGCT-T---TT-CG-CNTGATTAT--TACG-C--C-GTT---------TAT--ATA----T----------GTGTGT--ATTGTA----TAATGANGCT--TGCAA-----TAA-AATA-TTA-TNA-AAT-GACAATGACAAAT----GTT---TTA--TT-AAGCAATCTA--------GGCCTCCGGCC--CATAATACA-T-A-ATTACA-T--TTATATC--ATATA-----TAGTGAAA-AGTG---ACAA----CAGTGTTACAAAT---ATAAAACGTATATTA-ATAGATAGATAAC--------AATTGATTTGCATTTGTTTACATGTTAAGTGATTGGAAAAAT-A-A-TT-TCTTTTATTAAATACTTCAAAAATAAATTTAC-ATAGTGTTTTTAATTTTTGTTCATTTG----TTATACTCATTAATCTGTAAAATGAATTTAAATT-TATGTTAGTAACATTCAAAATATTG-AAAA-G-TATTCGCT-G-G-TAAA-C-TTCATAATAGGAACATTCCATGCATAC------------ATGGTATTCATCTTCAACTTCTCCAGCTGCACAAAGTATACAAAT----TCTATCTTCGTAAGCAACATTATTGTGTCTTCCAGTTTCTANATATAATTTGTGAGCTGAGCATCTNAATTTCGC-AAA-GC--------AATTTC----------AGG--TA--GATAAAGTAAGA-T-------T-TTTTTCAACATTTAAAAGAGATTTAAAGTTTTCATAA---TGGACGGTTTTGTGCGACTGAGAAATAT
gi|1                          :                                                          GTTGGGTCGAGAATGCTAGGG-TC-GT--TATGATGTTATCCGTCTCATTTTT----TTTTTTGT----C----TTT-------GCTTTCTTCACTATGAATTTTTAATTTATGTA---------TGTG-TTAACCCC--GCCATTT-AGTTCTATAAACGTAACACGTGGCGCTGTGGGAGCAACTGTAACTAATTATGGAATAACGTGTAGTCCAACCAATTTGCT-T---TT-TA-CTTGATTAT--TACG-C--C--TC---------TATTCACA----T----------ATGTGT--ATGGTG----TAATGAGGCT--TGCAA-----TAA-AATA-CTA-TAA-AAT-GACAATGACAAAT----GTT---TTA--AT-AAGCAATCTA--------GGCCTCCGGCC--CGTAATACA-T-A-ATTTCA-T--GTATATC--ATATA-----TAGTGAAA-AGTG---ACAA----TTGTGTTACAAAT---AGAAAACATATATCA-ATAGACAGATGAC--------AATTGATTTGCATTTGTTTGCATGCTAAGTGATTGAAAAAAT-A-A-TT-TCTTTTATTTATTACTTCAAAAATAAATTTAC-TTAATGTTTTTAATTTTTGTTCATTTG----TTATACCCATTAACCTGTAAAAGGAATTTAAATT-TATGTTAGTAGCATGCAAAATAC----------------------------C-TTCATAATAGAAGCATTCCATGCATAC------------ATGGTATTCATGTT-AAGTTCTCCAGCTGCATAAAGTGTACAAAT----TCTATCTTCGTAAGCAACATGATTGTGTCTTCCAGTTTCTACATATAATTTGTGAGCTGAGCATCTTAATTTTGCAAAA-GC--------AATTT----------------------TAAAGTAAGA-T-------A-TTTCTCAACATTTAAAAGAGATTTGAAGTTTTTAGAA---TGGACAGTTTTGTGTGACGGAGAAATAT
gi|10                         :                                                                          CATGG-AC-GTTGGGTGATGTTATC-TTCTCATATTT----TTCTCTCT----C----TTTCTTTTTAGCTTTCTTCAATTTGAAGTCTTTATTTATTAAGTTTGTTTGTTTG-TTTTCTCCCTGCCATTTTAGTCTAATAAACGTAACATGTAACGCTGTTGGAAGGATTGTAACGAATTTCGGAATAACCTATATTCCAACACATAGCCT-T---TT-CA-CC--ATTAT--TATG-C--C-ACTGTCTATATATAT--ATA----T----------GTGTGT--ATTCTA----TAATGGCGTT--TTCAA-----TAC-AATA-TTA-TGA-AA
gi|11                         :                                                                                                                                                                                                                                                                                                                                                                                                                                 aatcatgAAT----GTT---TTA--AT-GAGCAATATA--------GGTCTCCAGCC--AATAATACA-T-A-ATTATA-T--TTATATC--ATATA-----TAGTGAAT-AATG---ACAA----CACTGTTACAAAT---ATTAAACGTATATTA-ATAGATAGATAAC--------AATTGATTTGTATTTGTTTAAATGTTGAGTAATTGGATAAATAA-A-TT-TCTATTATTTAATACTTCAAAAATAAAACGAC-ATAGACTTTTTAATTTTTGTTCATTTG----TTATACTCATTAATCTGTAAATTGAATTTAAATT-TATGTTAGTAATATTCAAAATATTG-ctaaac
gi|12                         :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               A-T--GTATATC--ATAAG-----TAGTGAAA-AGTG---ACAA----CAGTGTTACGAAT---ATAAAACGTTAATTG-ATAGATAGATAAC--------AATTGATTTGCATTTGTTTACATGTTAAGTGATTGGAAAAAT-A-AATT-TCTTTTATTAAATACTTCAAAAATAAATTAAC-ATCGTGTTTTTAGTTTTTATTCATTTG----TTATACTCATTAATCTGTAAAATGAATTTAAATT-TATGCTATTAACATTCAAAATATTG-AAAA-GATATTCACTCC-G-TAAA-
gi|13                         :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                -T--TTATATC--ATATAATTTATATTGAAT-AATG---ACAA----CACTGTTACAAAT---ATAAAACATATATTA-ATAGATAGATAAC--------AATTGATTTGCCTTTGTTTACATGTTGAGTAATTGGATAAAT-A-AATT-TCTTTTATTTAATACTTCAAAAATAAAATGAC-ATAGACTTTTTAATTTTTGTTCATTTG----TTATACTCATAAATCTGTAAATTGAATTTAAATT-TATGTTAATAATATTGAAAATATT
gi|14                         :                                                                                             tgTATTCTTCTCGTATCC----TTATTAAT----T----TGT----TTCACTTTCTTCAATTTGAATTATTTA-TTGTTAAC--------TTTG-TTAATCTC--GCCATATTAGTTTAATAAACGTAACAAATGACGC-GTGTGTAAGACAGTAACTAATTTTGAAATAATCAGCCGTCCATCCCATTTAATGT---GT-CGTCATGTTTAA--TATG-CAAC-GTTGG-------TGT--ATGACTTT----------GTGTGT--ATTGTA----AAATG
gi|15                         :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            TTCGTAAGCAACATTATTGTGTC-------------AT-TA--TTGTTAGCTGAGCATCCTAATTTTGC-AAATGTAATACTAAAATTTCAA--------AGGTATA--GATAAAGTAAGATT-------T-TTTTTCAACATTTAAAATAGATTTAAAGTTTTCATAA---TGGACAGTTTTGTGTGACTGAGAAATATcag
gi|16                         :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            TGCATATGTTTACATGTTAAATGATTGGAAAAAT-A-AATT-TCTTTTATTAAACACTTCAAAAATAAATTTAC-TTAGTGTTTTAAGTTTTTGTT-ATTTG----TTATACTCATT-ATCTGCAAAATGAATTTAAATT-TATGGTAGTAACATTCAAAATTTTA-AAAAGG-TATTccgagcgccaatcttgtacagtacagtcaataacacgttgtttgaataatgaa
gi|17                         :                                                                                                                                                                                                                                                                                                                                                                                                   A-----TAA-AATG---A-ATA-AAT-GA--ATGACACAT----GTT---TGA--TT-AAGCAATCTA--------GGCCTCCAACCGTCAAAATGT--T-A-ATGACA-T--TTATACC--ATATA-----TAGTGAAA-TGTG---AAAA----GAGTGTTACGTAT---ATAAAACATATt
gi|18                         :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             AA-AGTG---ACAA----CGGTGTTACAAAT---ATAAAACGTATATTA-ATAGATAAATAAC--------AATTATTTTGCATTTGATGACATGTctaaagtaaggagggacagagagaacgctttcacttg
gi|19                         :                                                                                                                                                                                                                                                                                                                       caatgacaaattacaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnA-AATG-TCAATGACAAT-GACAATGACAAAT----GTT---TTA--TT-AAGCAATTTA--------GG
gi|2                          :                                                                                                                                                                                                                                                                                                                                                                                    gaccttgacgtcatagttaatgtttagtttaatgacA-AAT-GACAATTACAAAT----GTT---TTA--TC-AAGCAATTTA--------GGCCTCCAGCC--TATAATACA-T-A-ATTACA-T--TTATATC--ATATA-----TAGTGAAA-AGTG---ACAA----CAGTGTTACAAAT---ATAAAATGTATATTA-ATAGATAAATAAC--------AATTGCTTTGCATTTGTTTACANNNNNNNNNNNNNNNNNNNN-N-N-NN-NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-NNNNNNNNNNNNNNNNNNNNNNNNNNN----NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTAAGTTAATAACATTCAAAATATTG-AAAA-GGTATTCACT-GCG-TAAAGC-TTCATAATAGGAACATTCCATGCATAC------------ATGGTATTCATCTTCAATTTCTCCAGCTGCACAAAGTATACAAAT----TCTATCTTCGTAAGCAACATTATTGTGTCTTTCAGTTTCTATATATAATTTGTGAGCTGAGCATCTAAATTTCAC-AAAAGC--------AATTTTTTAACTTTAGAGG--TATTGATAAAGTAAGA-TATATATATATTTTTCAACATTTAA--GAGATTTAAAGTTTTCATAA---TGGACAGCTTTGTGTGACTGAGAAATATtttaatatcaacatgtatcttctattttaaacttaaatcattcaacaattacaactaagcaaaa
gi|20                         :                                                                                                                                                                                                                                                                                                                                                                                                                         -AAT-GACAATGACACAT----ATG---GTA--TT-AAGCAATTTA--------GGCCTCAGGCA--CATAAAAC------ATTACA-A--TCTTATC--ACAT------------AA-CATG---GCAA----CATTATTGCAAAT---GTAATA-G-ACATTG-TTAAATACCTAAC--------AGT
gi|21                         :                                                                                                                                                                                                                    atctttatgacaatgttaatgttGGGTAGCACTGTAACTGATGTTGAAGTAGCATGTAGACCAACCCATTCGCT-TGTGTTATG-TTTG-TTATTGTACGAA--T-GAT---------TAT--ATA----T----------ATGTATAAATTGTAAAAGTAATAATTTTTATGCAA-----CAG-AATA-TGA-TTA-AA
gi|22                         :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    CAACATTGTTGTGTGTTCAGATTTCTAAATATAATTGTTGATCCGAACATCTGAGTTTCAC-A--------------------------------------GATA---TA----T-------T-TTTTTCAAAATGTAAAAGAGATTAAAAGTTTTCATAATTCTGGATGTTTTTGTACAGCTGAAGTATATctta
gi|23                         :                                                                                                                                                                                                                                                                                                                                                                                                                                 AATGACAAAT----CTT---TTG--TT-AAACAATCCA--------GACATTCGGCC--CGTAAT--------ATTTCATT--TTATAGT--ATATA-----TAATGAA-----------AA----CCATGATACAAAT---ATAGTACGTATCTTACATGTAT---TAACTTAATGCAAATTGATGTACA
gi|24                         :                                                                                                                                                                                                                                                                                                                                                                                                                  aaA-CAA-AGT-AAAAATGACAAATTTTTGTTAAATTAATTT-AAACAATTTT--------AATCTCTA--C--CAAAATACA-T-TTATTACA-T--TTACACC--ATGTA-----CAGTGAAA--------------------GTTTCACAT---AT----CCT-------ATAGATAGATAAA--------CATTGATTTGC
gi|25                         :                                                                                                                                                                                                                                                                                                                                                                                                                          tgT-GAAAATGATAAAT----GTT---TTA--TTCAAGTA---TA------------TCCAGCC--CAT-ACACA-TAA-ATCATG-T--TTATATCAAATCTA-----TAATGAAT-AGTGGCCACAA----CAGGGTGAAAAATGGAATGAAA
gi|26                         :                                                                                                                                                                                                                                                                                                                                                                                                                         -AAT-GACAATGGAAATT----GTT---TTA--TT-AAGCAATCTA--------GGCatta
gi|26                         :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      atggcGAAATAG-G---ACTA----CAGTGTTACAAAT---ATAAAACGTATATTA-ATATATAGATAAC--------AATTGATTTGTATTggaaataggactacagtgttacaaatataaaacgtatattaatatatagataacaattgatttgtattag
gi|29                         :                                                                                                                                                                                                                                                                                                                                                     atggcaatgacaatggaaattgttttattaagcaatctaggcgGTAA-----TAATAATA---A-TCA-CATTGACAATGACACAT----GAT---TTA--TT-CAACAATCCA--------TGTCTCCGGCC--CATAAAACATT-G-ATTGCA-TGATAATA----ATA-A-----TAATGTAA-Aag
gi|3                          :                                                                                                                                                                                                                                                                                                                                                                                                                          caT-GGCAATGAAAAAT----GTT---TTA--TT-AAGCAATCTA--------GACCTCCGGCC--CATAGTACA-T-A-ATTACA--------------------------------AGTG---ACAATGTTCAGTGCTACAAAT---ATTAAACGTATATTA-ATAGATAT-TAAC--------CATTGATTTGCATTTGTTTACATGGTATGTGATTAGAAAAAT-A-ATTT-TTTTTTATTAAATACTTCAAAAATAAATTTAC-ATAGTGTTTTAAATTTGTGTTCATTTG----TTATACTCATTAATCTGTAAAATGAATTTAAATT-TATGTTTGTAACATTCAAAATATTG-GAAA-GATATTCACT-GAG-TAAAGC-TTCATAATAAGAACATTCCATGCATAC------------ATGGTATTCATCTTCAACTTCTCCAGCTGCACAAAGTATACAAATTCTATCTATCTTCGT---CAAC
gi|30                         : ttatctttgacttttacgtacaacttttatacagtttaataaatgcccagatatatgacaatgacacGGACACAGGGG-TA-GT--GATGATGTAATTCTTCTCATATTCCTTTTTTTCTTT----C----TTT----TTCGTTTTCTTCA
gi|33                         :                                                                                                                                                                                                                                                                                                                                                                                                                                                                            gggcaagggtggcgatggtaggaaccagatagTACA-T--TTATATC--ATATA-----TAGTGAAA-AGTG---ACAA----CAGTGTTACAAAT---ATAAAACGTATATCA-AT---------AT--------AATTGATTTGg
gi|34                         :                                                                                                                                                                                                                                                                                                                                                                                                                           AT-GGCAATGACA--------TT---TCA--TT-AAGCAATTTATATCTATAGGCCTCTGGCC--CATAATTCATT-A-ATTGCA-T--T
gi|36                         :                                                                                                                                                                                                                                                                                                                                                                                                                     -TTA-AGT-GATAATGACAAAT----GTT---TTA---T-AAGCAGTCAA--------GGCATACAGTC--CATAA
gi|4                          :                                                  caaaaaacGTTGGGCCGA-AACGCCAGGGGTA-GT--GATGATGTTATCCTTCTCATTTTC----TTTTTTAT----CTATATTC----TTCGCATTGTTCTATTTGAAGTATTTATCTATTTA---------TTTGTTTTTCCTC--
gi|4                          :                                                                                                                                                                             tcactctaaattaatatgtatatctcctttgagatgttgacgtttgaggcaaaggttatggacagggatggtatgaacctggcagtgacgttgggtcgggaaggcaggggttgcaagggtaggaaccaggcagtgacCA-C--T-GTT---------TAT--ATA----TATATGTTTGTGTGTGT--ATTGTA----TGATGAAGCT--TGTAA-----TAA-AATA-TTA-TTG-AAccacacaacaccannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntgccactgtttatatatatatgtttgtgtgtgtattgtatgatgaagcttgtaataaaatattattgaac
gi|5                          :                                                      tcactctaaattaatatgtatatctcctttgagatgttgacgtttgaggcaaaggttatggacagggatggtatgaacctggcagtgacgttgggtcgggaaggcaggggttgcaagggtaggaaccaggcagtgacgttgggccgaaacgccaggggtagtgatgatgttatccttctcattttcttttttatctatattcttcgcattgttctatttgaagtatttatctatttatttgtttttcctcccacacaacaccannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntgcTGACAAAT----GTT---TTA--TT-AAACAATCTA--------GGCTTCCGGAC--CATAATACA-T-A-ATTACA-T--TTATATC--ATATA-----TAGTGAAA-AGTG---ACAA----CAGTGTTACAAAT---ATAAAACATATATTA-ATAGATTGATAAC--------AACTAATTTACA--TG--TACATGTTAAGTGACTGGAAAAATAA-A-TT-TCTTTT-TTAAAAGCTTTAAAAACAAATTTACTTTAGTATTTTTAATTTTTGTTCATTTG----TTATACTGATTAATCTGAAAAATAAATTT--ATT-TAT-----TAACTTTCAAAATATTATAAAG-G-TATTTGCT-GTG-TAAATC-TTCCTAATAAGAACATTCCTTGCATAT------------ATGGTATTTATCTTCAACTTCTCCAGCTCAACAAAGTATACAAAT----TCTATCTTCGTAAGCAACATTATTGTTTCTTCCAGTc
gi|6                          :                                                                                                                                                                                                                                                                                                                                                                    aaatgtTTGTT----TAGTGAATCT--GGCAAGTCGTTAA-------TA-TGACAAT-GACAAAGACAAAT----GTT---TTA--TT-AAGCAATCTA--------GACATACGGTC--CATTATACA-T-A-ATTACA-T--ATATATC--ATATA-----TTGTGAAA-AGTG---ACAA----CAGTGTTACAAAT---ATAAAACGTATATTA-CTAGATAGATAAC--------AAATGATTTACATTTATATACATGTTAAGTGATTGGAAAAAT-ACA-TT-TCTTTTATTAGATACTTCAAAAATAAATTTAC-ATTGTGTTTTTAATATTTGTTCATTTG----TTATATTCATTAATCTGTAAAATGAATTTGAATT-AATGTTAGT-ACATTCAAAATATTGAAAAA-G-TATTCATT-GCG-TAAA-TATTCATGAAAGGAACATTCCATG
gi|7                          :                                                                                                                                                                                                                                                                                                                                                                                                          AA-AATAGTTA-TGACAAT-GACAATGACAAAT----GTT---TTA--TT-AAGCAATTTA--------GGCCTCCG-CC--TATAATACA-T-A-ATTACA-T--TTATATC--ATATA-----TAGTGAAA-AGTG---ACAA----CAGTGTTACAAAT---ATAAAACGTTTATTA-ATAGATAAATAAC--------AATTGCTTTGCATTTGTTTACATGTTTAGTGATTGGAAAAATAA-A-TT-TCTTTTATTAAA---TTCAAAAATAAATTTGC-ATAGTGTTTTTAGTTTTTGTTCATTTG----TTATACTCATTAATCTGTAAAATGAATTTGAATT-TATGTTAGTAACATTCAAAATATTG-A
gi|8                          : ttatccttgaaaacacatgacattttcattatttcactatatctacaatatttctataTTGGGTCG-GAACGGCAGGG-TTAGT--GATGATGTTATTTTTCTCATATTC----TTTTTTCTTCCTC----TTT----TTCGCTTTCTTCAATTTGAAGTATTCATATGTT-----------------TCCCCTC--GCTGTTTTAGTTTAATAAACGTAACATGTAACGCTGTGGGGAGAACTGTAACTAATGTTGGAAAAA-----AG--CAATTGTTT--TT-T---TT-TT-CATGATTAT--TATG-C--CAGTT---------TAT--ATA----T----------GTGTGT--ATTGTA----TAATGAAACT--TGCAA-----TAA-AATA-TTA-TTA-AAta
gi|9                          :                                                                                                                                                                                                                                                                                                                                                                                                  actctaaatcaatatgtacatgtcccctgagatgatgacgttcgaggttcaggttatgggaaggggtggcgacgataggaaccatgcaggggtaATGCA-T-A-ATTGCA-T--GTGTCTT--ATATA-----TAGTGAAA-AGTG---ATAA----ATGTGTTACAAAT---ATAAAACACATGTTA-ATAGATAAAAAAC--------AATTAATGTGCATTTGTTTACATATTAAGTGGTTGGA----------TTGTTTTTTATTAAATACTT---AAATAA-TTTGC-AATTTATTTTTAATTTTTGTTCATGTAATAATTCTGCTCATTGCTCTGTACAATGTGTTTAAATT-TATATAAGTAGCATTCAAAATATTG-AAAA-G--AT-CGTT-G-GATAAA-TGTTTATAACAGGAACAGTTCATACATACTATTTATATTATATGGTATTCATCTTCActatt