lowQualScore : 111111111111111111111111111111111111111
lowQualScore : 111 22222 1 11111111111 1 11 1111111 111 1 333333333333333333333333333 11111 1 777777777777777777777777777777777777777 22222 11111111111 1111111 5555555555555555 22222 1 11 222 1 11 3333333333333333333333333333333333333333333333333333 11111111 22222 1111111 1 3333333333 1111111 1 33333
lowQualScore : 000 2 1 1 22 5 333333 1 333333 3 22222 111 1 222 2222 2 1 7 44 11 1 1 1 11 555 11 55555555555 111 2 88888888888 4 1 1 1 2222 44 2 8888888 888 1 555 3333 44444 2 77777 2 555555555555555555555555555 44 4 11111 0 4 9 333333333333333333333333333333333333333 00000 11111111111 0 99 11 3333333 66 7777 99999 0000000000000000 2 2 8 7 3 1 2 11111 55 5 4 33 444 8 2 00 3 88888 44 9999999999999999999999999999999999999999999999999999 2 88888888 22222 3 6666666 1 1 1 1 3333333 55555555555 2 4444444444 4444444444 11 333 999 1 1 1 11 1 1 3 88 7 11 3 4444444444 22222 6666666 333333 44444 6 11111 333 2
lowQualScore : ... . . . .. . ...... . ...... . ..... ... . ... .... . . . .. .. . . . .. ... .. ........... ... . ........... . . . . .... .. . ....... ... . ... .... ..... . ..... . ........................... .. . ..... . . . ....................................... ..... ........... . .. .. ....... .. .... ..... ................ . . . . . . . ..... .. . . .. ... . . .. . ..... .. .................................................... . ........ ..... . ....... . . . . ....... ........... . .......... .......... .. ... ... . . . .. . . . .. . .. . .......... ..... ....... ...... ..... . ..... ... .
lowQualScore : 000 2 4 4 99 7 222222 1 222222 2 88888 999 1 000 4444 9 1 7 33 55 1 1 1 44 555 44 11111111111 888 1 33333333333 8 1 1 1 6666 66 6 7777777 222 5 666 3333 00000 1 00000 4 333333333333333333333333333 66 4 11111 9 4 8 000000000000000000000000000000000000000 00000 66666666666 9 33 55 2222222 99 7777 11111 6666666666666666 3 2 2 3 6 2 8 66666 55 3 0 55 888 0 8 66 3 33333 00 4444444444444444444444444444444444444444444444444444 1 11111111 55555 5 0000000 3 1 1 1 5555555 11111111111 2 6666666666 7777777777 55 888 444 1 1 1 55 1 1 5 44 9 66 5 6666666666 99999 4444444 555555 77777 7 88888 222 8
consensus : TCGATTT--NTTTGA-A-ATTT--ATTTTATTTGATAATA------T-AACA------TCTT--TC-T---ACCTTT-C---CT----GGA-AANTT--TC--AT-CAAA-A-TC--TAT---T--GCGATT----------ATCA---C-TT--C--------TTTTT-ATTGA-TTTGAAAC-ATACAACC----C-CC-GT----TACCTAA--AT-TCAC---A----AAA-----T-CAGTAT----CTTGTATAG----C--C---T-----T---G-CGCATTGATGCACGCACGACAGCG--ACTTCTCATTGAAT-GGA-----TAATAT-TTGAAATCCGGGC----------TTGTGGTATGTCGTTCCGC----------TCT-----TGAACAA-----G-----CGCTTG-ACGAAGT--AT--TTGAACGTT----GAT-----TT-----------CNAT-AATTTTATTGCGAAATTG-ANAGAACA----TAC--CATAGAAA-CAAAN-TCTGAATATCAAAA-TACAGATAAACCAATT-C-TAA-----ACGAAA--T-----ATACA----AACAA-----TA-AA--------A--------G-TGT-TGC---G---TTTTT---GTGAATTTAGGT--AAC--GG-GGGTTGTAT-GTTTCAAA-TCAAT-AA-------AAAG-----------AA-GTGATA----------ATCG----------C--A---AT--AGA-T-TTT-GAT--G-A-A-AN-TTTCC--A-GG-AAAN-G--TA-----GAAAGATGTT------A------TATT-----ATCAAATAAAATA---AATTTC---AAATAA
Reference ( gi|6 ) : TCGATTT--ATTTGA-A-ATTT--ATTTTATTTAATAATA------T-AACA------TTTT--GT-T---ACCTTT-C---CT----GTA-AAATT--TC--AT-CAAA-A-TC--TAT---T--GCGATC----------ATCA---C-TT--T--------TTTGT-ATTGA-TTTGAAAC-ATACAACC----C-GC-GT----CAGCTAA--TT-TCAC---A----AAA-----T-CAGTAT----CTTTTATAG----C--C---T-----T---G-CACTTTGATGCACGCACGACAGCG--ACTTCTCATTGAAT-GGA-----TAATAT-TTGAAATCCTGGC----------TTG--------------AC----------TCT-----TGAACAA-----G-----CGTTTG-GCGAAGT--GT--TTGGACGTT----GAT-----TT-----------ATAC-AATTTTATTGCGAGATTG-AAAGAACA----TAC--CATATAAA-CAAAT-TCTGAATAATTAAA-TACAGATAAACAAATG-C-TAA-----ACGGAA--T-----ATACT----AGCAA-----TA-AA--------A--------T-TGT-TGC---G---TTTAT---GTGAATTTAAGT--TAA--GG-GGGTTGTAT-GTTTCAAA-TCAAT-AA-------AAAG-----------AA-GTGATA----------ATCG----------C--A---AT--GGA-T-TTT-GAT--G-A-A-AC-TTACC--A-GA-ACAT-A--TA-----GAAAGATGTG------A------TATT-----ATCAAATACAATA--TACTTTT---AAATGA
gi|13 : TTGATTG--TTCTGA-A-ATTT--ATTTTATTTGAAAAAA------A-AACA------TCTT--TC-T---ACTTCT-C---CT----GGA-AATTT--TC--AT-CAAA-A-TCTGTAT---A--GCGATT----------ATTA---C-AT--T--------TT--T-ATTGA-TTTGAAAC-ACACAACC----C-CC-GT----TACCTAA--AT-TCACAAAA----AAA-----A-CAGTAT----TATGTATAG----C--CTCTT-----T---G-TGCATTGATGCATGCACGACAGCG--ACTTCACATTGAAT-AAA-----TAATAT-CTGAAATCCGGGC----------TTGTGGTATGTCGTTCCAC----------TCT-----TTAATTA-----G-----CGTTTG-ACGAAAT--AT--TTGAACGTC----GAT-----TT-----------CAAT-AATTTTATTGCGAAATTGTACAAAACA----
gi|11 : taTCGATTT--ATATGA-A-ATTG--ATGGTATTTGATAATA------T-TTAA------TCTT--TC-T---ACCTTT-C------------------------AT-CAAA-A-TC--TAT---T--GAAATT----------ATCA---C-TT--C--------TTTGT-ATTGA-TTTTAAAC-ATACAACC----T-CC-AT----TATCTAA--AT-TAAC---A----AAA-----T-CAGTAC----CTTATACAG----C--C---T-----T---G-TGCATTGATGCATGCATGACAGCA--ACTTCTCAGTGAAT-AGA-----TACTAT-TTGAAATTCGGGC----------TTGTGGTATTTCGTTCCAC----------TCT-----TGAACAA-----G-----TGCTTG-GCAAAGT--AC--TTGAACACT----AAT-----TT-----------CAAT-AATTTTAATGCAAGataaaagtgttgcgttttttttgtgaatttaggtaacgggggttatttgaatagtagatagatattgttttatgaaatgaaataaattttaaaaaca
gi|1 : actaagaaataagcacagagaatcaattagtcatttttttggtattcaaatctaatgaagaaatacacctgaccaaaaaacttttaaaaacgtaacactccgacaaacagcaattaaacatctttaTTGATGT--TTTTGA-A-ATTT--ATTTTATTTGATGATA------A-AGCA------TCTT--TC-T---TCCTTT-C---CT----GGA-AATTT--TC--TTCCAAA-A-TT--TAT---T--GCGATT----------TTCA---T-TT--C--------TTTTT-ATTGATTTTGAAAC-ATAAAATC----C-tgtatttaagaatcagagtctcatttcccacaaataaaagcttcgcaatattta
gi|18 : tnnnnnnnnnnaaacattaccctcagataaacacaataaaacatcaagttctttaTTGACTT--ATC-AA-A-ATTT--ATTTTATTTCATAATG------TTAACC------TTTT--------------T-C---TT----GAA-ATATT--T---AT-CAAA----T--TAT---TATGCGGTT----------ATCA---A-TT--C--------TTTTT-ATTGA-TTTGAACA-ATACATCC----C-CC-GT----TACTTAA--cnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnctcttgaataaggtgcccatttttacgattcagtgatttcaataattttattgcaaaattatacaaaactaaccatagaaacaaaatctgaatatcaaaatacagataaaccaatacttaacaaaattatacaaacaatagaagtgttgcatttttttgtgaactaagttaatgggggttgtaagttttaaatcaacagaaagaagtgataatcacaatagattttaatgaaagtttccaggaaagataaaagattctattttattgaataaataaatttc
gi|23 : gatttcaataattctattgcaaaaacgaaataaaataccatagaacagacatcttaatatcaaagtacagataaaccaataactaaacagatttatatagtgtcgtttgggggattTTGATTT--TTTTGA-A-ATTT--ATTTTATTTGATTATA------T-AACAGTTACATCTT--TC-T---ACTATT-C---CT----GGA-AATTT--TC--AT-TAAA-A-TC--TAG---T--GTGATT----------ATCG---C-TT--C--------TTTTT-ATTGA-TT---AACTATATAATC----taaag
gi|17 : aTCGATTTTTATTT-------TT--AATTTATTTGATAATA------A-AAAA------ATTT--TC-T---ATAGTT-T---TT----GTA-AAGTT--TC--AT-CAAT-A-TC--T------------------------ATCA---C-TT--C--------TTTTTAATTTT-TTTGAAAC-ATACAACC----C-CC-GT----TA-CCAATGTT-TTAT---GAATCAAA-----T-CAATA
gi|35 : catttttaaaaaataaatattgtatttcataaagtaacatcttttaaccatgtctgtaaattttcttcaaaatcaattgcgatctatgacgattatcacttcttttTCGATTT--CTTTGA-A-ATTT--ATTTTATTTGATAATA------T-TACA-------TCT--GTCT---ACCTT
gi|20 : taCGATTT--TTTTTA-ACATTT--ACTTTATTTGAAAATA------T-AACA------TCTT--TC-T---ACTTTT-C---CT----GGA-AAGTT--TC--CA-CACA-A-TC--TAT---T--GCCAGC----------ATCA---C-GA--T--------TTT-T-ATTGA-TTTGAAAC-ATACAACC----A-CT-GT----TACCTAA--AT-TCAT---A----AAA-----T-CAGTAA----CTTGTATAGCAT-C--C---T-----T---G-TGCATTGGTGCACCCACGACAGCG--AATTCTCAT
gi|19 : CGATTT--TTTTAACA-AAAT--ATTT-ATTTCATAAAA------T-AACA------TCTT--TC-A---ACCATT-T---CT----GTT-AATTTG-TT--AT-CAAA-A-TC--TAT---T--GCAATT----------ATCA---C-TT--C--------TTTTC-ATTTA-TTTCAAAC-AAACAACC----C-CC-GT----TACCTAA--AT-TCACA--A----AAA-----T-CAGTAT----TTTGTATAGCTA-C--C---T-----T---G-CGCATTGATGCACGCGCGACAGCG--
gi|14 : CGATTC--TTTT---A-ATTTTCCTTTTATTTGATGATA------T-AACA------T------------A--TTC-C---CT----GGA-AATTT--TC--AT-CCAA-A-TC--TAT---T--GCAGTT----------TTGA---C-TT--C--------TTTTT-GTTGA-TTTAAACT-ATACAAAT----C-AC-GT----TACCTAA--AT-TCAC---A----AAA-----T-CAGTAT----CTTGTATAGCCA-C--C---T-----T---G-CGAGTTGATGCACGgatgtatatgtgaatttaggtaattggggttgtacgttgcttttcttaaat
gi|3 : GATTT--ATTTGA-A-ATTC--GTTTTATTTGGTAATA------T-AACA------TCTT--TC-T---ACCTTT-C---AT----GAA-AATTT--TC--AT-CGAA-A-TC--TATAATT--GTGATT----------ATCT---C-GT--C--------TTTTT-ATTGT-GTTGAAAC-ATACTACC----C-CC-TT----TACCTAA--AT-TCAC---A----AAA-----C-CAATAG----CTTGTATAG----C--C---TCCT--T---A-CGCATTGATGCACGCACGACAGCG--ACTTATCATTGAAT-GGA-----TAATAT-TTGAAATCA-GGC----------TTT--------------GCGGTATGTTGTTCTACAAGTGAACAG-----G-----CGCTTG-ACGAAGG--AC--TTGAACGTT----GAT-----TT------------CACTAATTGTATTTGGAAATTG-ATAGAACATAGTTAC--CATAGAAA-CAAAT-TCTGAATATTTAAA-TACAGATAGGTCAATG-C-TAA-----ACAAA------------------AGTAAAATTCTA-AA--------A--------G-TGT-TGC---GTTTTTTTT---GTGAATTTAGGA--AAC--GG-GGGTTGTAT-GTTTCAAA-TCAAT-AA-------ACAG-----------AA-ATGATA----------GTCG----------C--A---AT--AGA-T-CTT-GAT--G-A-ACAA-TT-CC--A-GG-GAAG-A--AA-----GAAACATATatggctgtatgtttcaatcaataaaaagaagcgttaatcgtaaaagatattgatgaaaatttgcacgaaaagtaaaaggatgttatattatcaaataaaagaaagtttaaaaaaatattgataaagaactcaatgtcttatttatcgccgttt
gi|2 : GATTT--ATTTGA-A-ATTC--GTTTTATTTGGTAATA------T-AACA------TCTT--TC-T---ACCTTT-C---AT----GAA-AATTT--TC--AT-CGAA-A-TC--TATAATT--GTGATT----------ATCT---C-GT--C--------TTTTT-ATTGT-GTTGAAAC-ATACTACC----C-CC-TT----TACCTAA--AT-TCAC---A----AAA-----C-CAATAG----CTTGTATAG----C--C---TCCT--T---A-CGCATTGATGCACGCACGACAGCG--ACTTATCATTGAAT-GGA-----TAATAT-TTGAAATCA-GGC----------TTT--------------GCGGTATGTTGTTCTACAAGTGAACAG-----G-----CGCTTG-ACGAAGG--AC--TTGAACGTT----GAT-----TT------------CACTAATTGTATTTGGAAATTG-ATAGAACATAGTTAC--CATAGAAA-CAAAT-TCTGAATATTTAAA-TACAGATAGGTCAATG-C-TAA-----ACAAA------------------AGTAAAATTCTA-AA--------A--------G-TGT-TGC---GTTTTTTTT---GTGAATTTAGGA--AAC--GG-GGGTTGTAT-GTTTCAAA-TCAAT-AA-------ACAG-----------AA-ATGATA----------GTCG----------C--A---AT--AGA-T-CTT-GAT--G-A-ACAA-TT-CC--A-GG-GAAG-A--AA-----GAAACATATttttaaaaaaatggtatgaaacgcgatgatttattgctgtttatctgcttttctaaagtatgtcggt
gi|7 : GATTT--TTTTTA-T-ATTT--ATTTGATTTAGTAATA------T-TACA------TTTT---C-T---ATCTTT-A---CT----G---GAATT--TCCCAT-TAAA-AATA--TGT---T--GTGATT----------ATCA---T-TT--A--------TTTTT-ATTGA-TTTGAAAC-ATTCAATC----C-CC-AT----AACCTAA--AA-TCAC---A----AAA-----ttttaaaaaaatggtatgaaacgcgatgatttattgctgtttatctgcttttctaaagtatgtcggtg
gi|14 : tttaatcgatatcttaaccttcattttatttaataatatcacgcatctatagcgattaccacttctttttattgatttgaattatacaagcccattacctaacttcacacagtcagtatcttgtatagtcttcttgcgcattgatacacgcatgacagcaactcctcgttaattggttgatatatggaatccgggcgcgtggtattttgttccactcttcaacaagcggttaacggttttcagtaaaattattgctaaattgaaagaaaaactatcatggaaagaatatctgaatattaaaatacagataaatcaactctaaatgaaattatacaaacaataaaagtgtttcgttATTT--TTTTAA-A-CTTT--CTTTTATTTGATAATA------T-AACA------TCCT--TT-T---ACTTTT-C---GT----GCA-AATTT--TC--AT-CAAT-A-TC--TTT---T--ACGATT----------AACG---C-TT--C--------TTTTT-ATTGA--TTGAAAC-ATACAGCCATCGT-GC-AT----CAACT
gi|9 : cgattcttttaattttccttttatttgatgatataacatattccctggaaattttcatccaaatctattgcagttttgacttctttttgttgatttaaactatacaaatcacgttacctaaattcacaaaatcagtatcttgtatagccaccttgcgATTT--ATTTAA-A-ATGT--ATTTTATTGGATAATA------T-ATCA------TCTC--TC-T---ATCATT-C---CT----GGA-AATTT--TC--AT-CAGA-A-TC--TAT---T--GTGATT----------ATCA---C-CT--C--------TTTTT-ATTAA-TTTTAAAC-ATACGACC----C-CC-GT----attgataaagaactcaatgtcttatttatcgccgttt
gi|8 : acctccttacgtaggtgcatgcatgtaacatcctggtatcccgttacgtaggtacatgtcggtaacatcctggtatcccgttacgtaggtacatgtcggtaatatcctggtatttccttacataggtgtcgtatgtctttataagtagctgccttcaaagacctgttcaatcctcacatacaccgaacgactttaaaaacgatattctcagagaaacagcaataaaactttaagatctttatcgttttgttgtttttttttgtttgtttttttgataatataacattgacattttctggaaattttcatcaaaatatattgctatactcactttttttttattaatttgaaaccaccttgcgcattgatgcATTT--ATTTAA-A-ATGT--ATTTTATTGGATAATA------T-ATCA------TCTC--TC-T---ATCATT-C---CT----GGA-AATTT--TC--AT-CAGA-A-TC--TAT---T--GTGATT----------ATCA---C-CT--C--------TTTTT-ATTAA-TTTTAAAC-ATACGACC----C-CC-GT----
gi|5 : acctccttacgtaggtgcatgcatgtaacatcctggtatcccgttacgtaggtacatgtcggtaacatcctggtatcccgttacgtaggtacatgtcggtaatatcctggtatttccttacataggtgtcgtatgtctttataagtagctgccttcaaagacctgttcaatcctcacatacaccgaacgactttaaaaacgatattctcagagaaacagcaataaaactttaagatctttatcgttttgttgtttttttttgtttgtttttttgataatataacattgacattttctggaaattttcatcaaaatatattgctatactcactttttttttattaatttgaaaccaccttgcgcattgatgcTTT--TTTTAA-A-ATTC--ATTTTATTTGATTAAA------T-ATCA------TCTT--TC-T---ATCATT-C---CT----GGA-TAGTT--TC--AC-CAAA-A-TC--TAA---T--GCGATT----------ATCA---C-TT--C--------TTGTT-ATTGG-TTTGAAAC-ATACAACC----C-TT-GT----GACCTAG-----TCAT---A----AAA-----T-CAGTAT----CTTGAATAG----C--C---TCCTTGT---G-CAC--TGATGCATGCATGACAGCA--ACTTCTCACTGAAT-GGA-----TATTAT-TTGAAATCTGGGC----------GTGTGGTATGTTATTCCAT----------TCT-----TGAACAA-----G-----CACTTA-ACAAAGT--AC--TTGAACGTTCCCAGGTGGCAGTTGGCGTATGTAAACAT-AATTT----------TTC-AGAAAATA------C--CATAGAAA-CAAAT-TCTGAAT-ATCAAACTACGGATAAACCAATT-C-TTA-----ACGAAAT-T-----ATACA----AACAA-----TA-AA--------A--------G-TGT-TACATTG---TTT-T---GTGAATTTAGGT--AAA--GT-GGGTTTTAT-GTTTCAAA-TCAAT-AA-------AAAG-----------AT-GTGATA----------ATCG----------C--A---AT--ATA-T-TTT-GAT--G-A-A-AC-TTTCC--A-GG-AAAG-G--TA-----GGAAGATGTT------ATAATAGTATT-----ATCAAA
gi|9 : gattTTT--TTTTG-----TTT--GTTTT-TTTGATAATA------T-AACA------TT----G------ACATTT-T---CT----GGA-AATTT--TC--AT-CAAA-A-TA--TAT---T--GCTATA----------CTCA---CTTT--T--------TTTTT-ATTAA-TTTGAAAC-aaaaa
gi|8 : acctccttacgtaggtgcatgcatgtaacatcctggtatcccgttacgtaggtacatgtcggtaacatcctggtatcccgttacgtaggtacatgtcggtaatatcctggtatttccttacataggtgtcgtatgtctttataagtagctgccttcaaagacctgttcaatcctcacatacaccgaacgactttaaaaacgatattctcagagaaacagcaataaaactttaagatctttatcgttttgttgttTTT--TTTTG-----TTT--GTTTT-TTTGATAATA------T-AACA------TT----G------ACATTT-T---CT----GGA-AATTT--TC--AT-CAAA-A-TA--TAT---T--GCTATA----------CTCA---CTTT--T--------TTTTT-ATTAA-TTTGAAAC-caccttgcgcattgatgcacgggggtcgtatgtttaaaattaataaaaagaggtgataatcacaatagattctgatgaaaatttccaggaatgatagagagatgatatattatccaataaaatacattttaaataaat
gi|4 : acctccttacgtaggtgcatgcatgtaacatcctggtatcccgttacgtaggtacatgtcggtaacatcctggtatcccgttacgtaggtacatgtcggtaatatcctggtatttccttacataggtgtcgtatgtctttataagtagctgccttcaaagacctgttcaatcctcacatacaccgaacgactttaaaaacgatattctcagagaaacagcaataaaactttaagatctttatcgttttgttgttT--GTTTTA-A-ATTTC-ATTTTCTTTGATAATA------T-AATA------TCTT--TC-T---ACCATC-T---CT----GAA-AAGTT--TC--GT-CAAA-A-CC--TAT---T--GCAATG----------ATTA---C-TA--C--------TTTTT-ATTGA-TTTGAAAC-ATACAGCA----C-TC-GT----AACATAA--AT-TCAC---C----AAcaccttgcgcattgatgcacgggggtcgtatgtttaaaattaataaaaagaggtgataatcacaatagattctgatgaaaatttccaggaatgatagagagatgatatattatccaataaaatacattttaaataaat
gi|12 : ttgaaatttattttatttgagaatatagcatcttcctacctttccgggaaagtttcatcaaaattggttgcgattattatttctttattactactttttattgatttgaaacacacaaaatcattatcttatagcctccttgtgcatcgatgcacgcacggtagcgacttctcattgaatcaacactatttgaaatccgggcttgttttaagttgttccgctctttaacaagcgtttgacgaaatatttgaacgttgatttcaataattttcctgcgaaattgaaataacataccactgaatcaaaatctgaatatcaaaatacagataaaccaattctaaacaaaattatacaaacaataacagtgttgcatttaTTTTA-G-ATTT--ATTTTATTTGATAGTA------T-AAAA------TCTTTCGT-TTTTACATTT-C---CT----GGA-AATTT--TC--AT-CAAC-A-TC--TGT---T--GCGATT----------ATCA---C-TT--C--------TTTTT-ATTAT-TTTGAAAC-ATACAACC----C-CC-AT----TACCTAA--AT-TCACA--A----AAA-----TGCAACA-----CTTTTATtgataatgaactcaatcttttattgcagtttaccggatggttgcgtttcta
gi|16 : aaatttatatatgtatttatctttttatctttccttgaaattgtcaccttgttgtcaaattgtcacaaaatcattatcttgtatagcatcctgacaaattgatgcacacacaacatttacttctcattgaatggttaatatttgaaatccagacttgtggtatgttgttgcactctttaactatatccactttcacggtttggtgatttcattaattttattacaaaattgaaagaaaataccaaagaaacaatatctgaatatcaaaacacagataaacaaattctaaacgaaattgataatacaaacaTTTGA-A-ATTT--ATTTCACTTGATACTA------T-AACA------TCT----------ATCTTT-CTTTCT----ATGGAAATT--TC--AT-TAAA-T-AC--TAT---T--GCAATT----------ATTA---C-AT--C--------TTTTT-ATTGA-TTTGAAAC-ATACAACT----C-TC-GC----TACCTAA--AT-T-AC---A----AAA-----
gi|21 : actattttattgcaaaattgaaagaaaaaaaaacataaaaacaaaatttgaatatcaaaatacatataaacccattctaaacaaaagtataaaaacaaaaatagtgttacgtTTTAA-A-ATTT--ATTTTATTTGATAATA------T-AATA------TCAT--TC-T---ACTATA-T---CT----GGA-AAGTT--TC--AT-CAAA-A-TC--TAT---T--GCAATG----------AACA---C-TG--T--------TTT-T-ATCGA-ATTGAAAT-ATACAACC----C-CC-AT----TATCTAA--AC-TGAC---A----AAA-----atatt
gi|22 : ataaaccaattctaagttttacaaaaaatatacttgtgaacaataaaagtgttgcgatttTTTGG-A-ATTT--ATTTTATTTGAAAATA------T-AACA------TCT---GTCT---AACTTT-C---CT----GGA-AAATT--TC--AT-CAAA-A-TC--TGT---T--GCGATT----------ATCA---C-CT--C--------TTTTT-ATTGaa
gi|25 : TTTGA-A-GTTT--ATTTTATTTTATTATA------A-AATA------TCTT--TC-T---ATTTTT-T---CT----GAG-AAGTT--TT--AT-CAAA-T-TT--TAT---T--GTGAAT----------ATTG---C-TT--C--------TTTTT-ATTGA-ATTGAAAC-ATACAAattatcgatacagtccgtaatgtttctatgctgtttatctgagttatatgtttctaaagtagta
gi|4 : tTTGA-A-ATTT--ATTTTATTTGAGAATA------T-AGCA------TCTT--CC-T---ACCTTT-C---CG----GGA-AAGTT--TC--AT-CAAA-A-TT--GGT---T--GCGATT----------ATTATTTC-TT--TATTACTACTTTTT-ATTGA-TTTGAAAC-A-----------------------------------CAC---A----AAA-----T-CATTAT----CTT--ATAG----C--C---TCCT--T---G-TGCATCGATGCACGCACGGTAGCG--ACTTCTCATTGAAT-CAA-----CACTAT-TTGAAATCCGGGC----------TTGTTTTAAGTTGTTCCGC----------TCT-----TTAACAA-----G-----CGTTTG-ACGAAAT--AT--TTGAACGTT----GAT-----TT-----------CAAT-AATTTTCCTGCGAAATTG-AAATAACA----TAC--CAC-TGAATCAAAA-TCTGAATATCAAAA-TACAGATAAACCAATT-C-TAA-----ACAAAAT-T-----ATACA----AACAA-----TA-AC--------A--------G-TGT-TGC---A---TTTATTG-GTGAATTTATGT--TAC--GA-GTGCTGTAT-GTTTCAAA-TCAAT-AA-------AAAG-----------TA-GTAATC----------ATTG----------C--A---AT--AGG-T-TTT-GAC--G-A-A-AC-TTTTC--A-GA-G-ATGG--TA-----GAAAGATATT------A------TATT-----ATCAAAGAAAATG--AAATTTA---AAAattatt
gi|10 : TTTA-A-ATCT--ATTT-ATTTGATTATA------T-GACA------TCTT--TT-T---AAATTT-A---TT-----TG-AAATA--TC--AT-TAAATA-TC--TAT---A--GCGTTA----------ATCA---C-TT--T--------TTT-T-----A-TTTGAAAC-ACACAATC----T-CC-GT----AATTTAA--AT-AAAC---G----AAA-----T-catgataatgaactcaatcttttattgcagtttaccggatggttgcgtttcta
gi|15 : aatttaacgttttccttttcctagaagaaaaaatcataaaaatctactgcaaatatcgcttctttgattacttagaaacatacaaaccccagttacctaaattcacaaaatcagtatcttgtataaacctccttgcgcattgatgtgcgcacgacggcgatattttttacaatccgaccttgtggtatgttgttccgcttttgactaagcgcttgccaaagtacgtacttgaacgttaatttcaaaaactgtattgtaaatatcatagaaacaaaatcagaatatcaaaatgcagataaaccaattcaaacgaaattatacaaacaataagtgttttttatgatttttttgtgtgtttttTTAA-A-ATTA--ACTTTATTTGATAATA------T-AACA------TCTT--TC-T---ACCTTT-C---CT----GCA-AAATG--TC--AT-CAAA-C-TC--TAT---T--CTGACT----------ATCA---C-TTCTT--------TTTGT-A--GA-TTTGAAAC-ATACAGCC----C-AT-GT----CACCTTA---T-TCAC---A----AAA-----T-CACTAT----CTTGTATAGTCT-C--C---T-----T---G-CTCACTGATGCCCACACAACAACA--A
gi|1 : tcaatattcGA-A-ATTT--ATTT-ATTCAATAAAA------T-AGAA------TCTT---T-T---ATCTTT-C---CT----GGA-AACTT--TC--AT-TAAA-A-TC--TAT---T--GTGATT----------ATCA---C-TT--C--------TTTCT-GTTGA-TTTAAAAC-TTACAACC----C-CC-AT----TAACTTA--GT-TCAC---A----AAA-----agttacaagtgaatttaggtatcaaacgggggttgtatgattcaaatcaataaaaatagatgatactgaacagtctactgaagagcaaactttc
gi|17 : tnnnnnnnnnnaaacattaccctcagataaacacaataaaacatcaagttctttattgatgtttttgaaatttattttatttgatgataaagcatctttcttcctttcctggaaattttcttccaaaatttattgcgattttcatttctttttattgattttgaaacataaaatcccnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnctcttgaataaggtgcccatttttacgattcagtgatttcaataattttattgcaaaattatacaaaactaaccatagaaacaaaatctgaatatcaaaatacagataaaccaatacttaacaaaattatacaaacaatagaagtgttgcatttT--ATTGTATTTCATAAAG------T-AACA------TCTT--TT-A---ACCATG-T---CT----GTA-AATTT--TC--TT-CAAA-A-TC--AAT---T--GCGATCTATGACGATTATCA---C-TT--C--------TTTTT-ATTGA-TTTGATTC-ATAAAAC
gi|24 : catttttaaaaaataaaT--ATTGTATTTTATTAAG------T-AACA------TCTT--TT-A---ACCATG-T---CT----GTA-AATTT--GC--TT-CAAA-A-TC--AAT---T--GCGATCTATGACGATTATCA---C-TT--C--------TTTattggtaacgggggttgtatgtttcaaaaaaattaaaaagaagtgatagatattgatgaaactttacaaaaactatagaaaatttttttattatcaaataaattaaaaataaaaatcga
gi|3 : taaaaaaaa--ATTTT-TTTAAAAATA------T-G----------TTT--CT-T----TCTTC-C---CT----G---GAATTGTTC--AT-CAAG-A-TC--TAT---T--GCGACT----------ATCA---T-TT--C--------TGTTT-ATTGA-TTTGAAAC-ATACAACC----C-CC-GT----TTCCTAA--AT-TCAC---A----AAA-----cggtgaatcattgatgtaa
gi|2 : gatttatttgaaattcgttttatttggtaatataacatctttctacctttcatgaaaattttcatcgaaatctataattgtgattatctcgtctttttattgtgttgaaacatactaccccctttacctaaattcacaaaaccaatagcttgtatagcctccttacgcattgatgcacgcacgacagcgacttatcattgaatggataatatttgaaatcaggctttgcggtatgttgttctacaagtgaacaggcgcttgacgaaggacttgaacgttgatttcactaattgtatttggaaattgatagaacatagttaccatagaaacaaattctgaatatttaaatacagataggtcaatgctaaacaaaagtaaaattctaaaagtgttgcgtttt--ATTTT-TTTAAAAATA------T-G----------TTT--CT-T----TCTTC-C---CT----G---GAATTGTTC--AT-CAAG-A-TC--TAT---T--GCGACT----------ATCA---T-TT--C--------TGTTT-ATTGA-TTTGAAAC-ATACAACC----C-CC-GT----TTCCTAA--AT-TCAC---A----AAA-----ggtatgaaacgcgatgatttattgctgtttatctgcttttctaaagtatgtcggt
gi|5 : gatttatttgaaattcgttttatttggtaatataacatctttctacctttcatgaaaattttcatcgaaatctataattgtgattatctcgtctttttattgtgttgaaacatactaccccctttacctaaattcacaaaaccaatagcttgtatagcctccttacgcattgatgcacgcacgacagcgacttatcattgaatggataatatttgaaatcaggctttgcggtatgttgttctacaagtgaacaggcgcttgacgaaggacttgaacgttgatttcactaattgtatttggaaattgatagaacatagttaccatagaaacaaattctgaatatttaaatacagataggtcaatgctaaacaaaagtaaaattctaaaagtgttgcgttttTTTTTTTTGATAATACTATTAT-AACA------TCTT--CC-T---ACCTTT-C---CT----GGA-AAGTT--TC--AT-CAAA-A-TA--TAT---T--GCGATT----------ATCA---C-AT--C--------TTTTT-ATTGA-TTTGAAAC-ATAAAACC----C-AC-TT----TACCTAA--AT-TCAC---A----AAA-------CAATGTAACACTTTTATggtatgaaacgcgatgatttattgctgtttatctgcttttctaaagtatgtcggtg
gi|30 : gatttttttttaaaattcattttatttgattaaatatcatctttctatcattcctggatagtttcaccaaaatctaatgcgattatcacttcttgttattggtttgaaacatacaacccttgtgacctagtcataaaatcagtatcttgaatagcctccttgtgcactgatgcatgcatgacagcaacttctcactgaatggatattatttgaaatctgggcgtgtggtatgttattccattcttgaacaagcacttaacaaagtacttgaacgttcccaggtggcagttggcgtatgtaaacataatttttcagaaaataccatagaaacaaattctgaatatcaaactacggataaaccaattcttaacgaaattatacaaacaTGATGATA------T-AATA------TCTT--TC-T---ACCTTT-C---CT----GGA-TATTC--TT--AT-CAGA-T-TA--TAT---T--GTGATT----------A
gi|10 : AATT------T-AACG------TTTT----------CCTTTTC---CTAGAAGAA-AAAAT---C--AT-AAAA-A-TC--TAC---T--GCAAAT----------ATCG---C-TT--C--------TTTG--ATTAC-TTAGAAAC-ATACAAAC----C-CCAGT----TACCTAA--AT-TCAC---A----AAA-----T-CAGTAT----CTTGTATAAACCTC--C---T-----T---G-CGCATTGATGTGCGCACGACGGCGATATTTTTTAC--AATCCGACCTTGTGGTATGTTG---TTCCG------------------------------C----------TTT-----TGACTAA-----G-----CGCTTG-CCAAAGTACGTACTTGAACGTT----AAT-----TT-----------CAAA-AACTGTATTGTAA-------------A----TAT--CATAGAAA-CAAAA-TCAGAATATCAAAA-TGCAGATAAACCAATT-C--AA-----ACGAAAT-T-----ATACA----AACAA-----TA-AGTGTTTTTTATGATTTTTT-TGTGTGT---T---TTTATTTCGTTTATTTAAAT--TAC--GG-AGATTGTGT-GTTTCAAA-T------A-------AAAA-----------AA-GTGATT----------AACG----------C--T---AT--AGA-TATTT-AAT--G-A-T-AT-TT--C--A-AATAAAT-T--TA-----AAAAGATGTC------A------TATA-----ATCAAATA-AATA--GA--TTT---AAA
gi|26 : --AT-CCAA-A-TC--TAT---T--GCGATT----------ATCG---C-TT--C--------TTTTA-ATTGG-TTTGAAAC-ATACAGTC----C-TA-GT----GACCTAA--AT-TCAT---A----AAA-----T-CAGTAT----ATTGTAT
gi|12 : AA-A-TT--TATATAT--GTATTT----------ATC-------T--T--------TTTAT-CTTTC-CTTGAAAT--TGTCACC----TTGTTGT----CA---AA--TTGTCAC---A----AAA-----T-CATTAT----CTTGTATAG----CATC---C-----T---GACAAATTGATGCACACACAACATTT--ACTTCTCATTGAAT-GGT-----TAATAT-TTGAAATCCAGAC----------TTGTGGTATGTTGTTGCAC----------TCT-----TTAACTATATCCA-----C-TTTC-ACG------GT--TTGG----T----GAT-----TTC----------AT-T-AATTTTATTACAAAATTG-AAAGAAAA----TAC--CAAAGAAA-CAATA-TCTGAATATCAAAA-CACAGATAAACAAATT-C-TAA-----ACGAAA--TTGATAATACA----AACAA-----TA-AA--------A--------G-TGT-TGC---A---TTTTT---GTGAATTTAGGT--AAT--GG-GGGTTGTAT-GTTTCAAA-ATAAT-AA-------AAAG-----------AA-GTGATA----------ATCG----------C--A---AC--AGA-T-GTT-GAT--G-A-A-AA-TTTCC--A-GG-AAAT-G--TAAAAACGAAAGATTTT------A------TACT-----ATCAAATAAAATA--AA--TCT---AAAtgagatacacgg
gi|7 : -A-TC--TAT---A--GCGATT----------ACCA---C-TT--C--------TTTTT-ATTGA-TTTGAATT-ATACAAGC----C--C-AT----TACCTAA--CT-TCAC---A----CAG-----T-CAGTAT----CTTGTATAG----T--C---T-----TCTTG-CGCATTGATACACGCATGACAGCA--ACTCCTCGTTAATT-GGT-----TGATAT-ATGGAATCCGGGCGCGTGGTATTTTGTTCC----------AC----------TCT-----TCAACAA-----G-----CGGTTA-ACG--GT--TT--TCAG-------------------------------TAA-AATT--ATTGCTAAATTG-AAAGAAAAAC--TAT--CATGGAAA--GAATATCTGAATATTAAAA-TACAGATAAATCAACT-C-TAA-----ATGAAA--TT----ATACA----AACAA-----TA-AA--------A--------G-TGT-TTC---G---TTTTTT--GTGATTTTAGGT--TAT--GG-GGATTGAAT-GTTTCAAA-TCAAT-AA-------AAAT-----------AA-ATGATA----------ATCA----------C--A---AC--ATATT-TTT-AATGGG-A-A-AT-T--CC--A-GT-AAAG-A--TA-----GAAA-ATGTA------A------TATTACTAAATCAAATA-AATA--TAa
gi|15 : tttaatcgatatcttaaccttcattttatttaataatatcacgc----------ATCA---T-CT--A--------TTTTT-ATTGA-TTTGAATC-ATACAACC----C-CC-GTTTGATACCTAA--AT-TCAC---aaaaaaatc
gi|13 : tcaatattcttaaaattaactttatttgataatataacatctttctacctttcctgcaaaatgtcatcaaactctattctgactatcacttctttttgtagatttgaaacatacagcccatgtcaccttattcacaaaatcactatcttgtatagtctccttgctcactgatgcccacacaacaacaaagttacaaC-AAATAACC----C-CC-GT----TACCTAA--AT-TCAC---A----AAAAAAACG-CAACA-----CTTTTATTG----T--T---T-----T---G-TACactgaacagtctactgaagagcaaactttc
gi|1 : tattgattgttctgaaatttattttatttgaaaaaaaaacatctttctacttctcctggaaattttcatcaaaatctgtatagcgattattacatttttattgatttgaaacacacaacccccgttacctaaattcacaaaaaaaacagtattatgtatagcctctttgtgcattgatgcatgcacgacagcgacttcacattgaataaataatatctgaaatccgggcttgtggtatgtcgttccactctttaattagcgtttgacgaaatatttgaacgtcgatttcaataattttattgcgaaattC----------TCT-----TGAATAA-----GGTGCCCATTTTTACGA------T--TCAG----T----GAT-----TT-----------CAAT-AATTTTATTGCAAAATTATACAAAACT----AAC--CATAGAAA-CAAAA-TCTGAATATCAAAA-TACAGATAAACCAATA-C-TTA-----ACAAAA--TT----ATACA----AACAA-----TA-GA--------A--------G-TGT-TGC---A---TTTTTTT-GTGAACT-AAGT--TAAT-GG-GGGTTGTAA-GTTTTAAA-TCAAC-AG-------AAAG-----------AA-GTGATA----------ATCA----------C--A---AT--AGA-T-TTT-AAT--G-A-A-AG-TTTCC--A-GG-AAAG-A--TA------AAAGATTCT------A------TTTT-----ATTGAATA-AATA--AATTTaatagtagatagatattgttttatgaaatgaaataaattttaaaaaca
gi|18 : tnnnnnnnnnnaaacattaccctcagataaacacaataaaacatcaagttctttattgatgtttttgaaatttattttatttgatgataaagcatctttcttcctttcctggaaattttcttccaaaatttattgcgattttcatttctttttattgattttgaaacataaaatcccnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn----GAT-----TT-----------CAAT-AATTCTATTGCAAAAACG-AAATAAAA----TAC--CATA-GAA-CAGACATCTTAATA-TCAAAGTACAGATAAACCAATAAC-TAA-----ACAGAT--TT----ATA-T----AG--------------------------------TGT---C---G---TTTGG---GGGATTTTAAGT--AAC--GG-GGGATGTAT-TGTTCAAA-TCAAT-AA-------AAAG-----------AA-TTGATA----------ACCG----------CATA---AT----A-A-TTT-GAT--A-A-ATAT-TT-CA--A-GA-A---------------AAAGGT-TA------A------CATT-----ATGAAATAAAATA--AATTTTc
gi|16 : AC-TATTTTATTGCAAAATTG-AAAGAAAA----AAAAACATAAAAA-CAAAA-TTTGAATATCAAAA-TACATATAAACCCATT-C-TAA-----ACAAAAG-T-----ATAAA----AACAA-----AA-AT--------A--------G-TGT-TAC---G---TTTTT---GT-AATTTAGGT--AGC--GA-GAGTTGTAT-GTTTCAAA-TCAAT-AA-------AAAG-----------AT-GTAATA----------ATTG----------C--A---AT--AGT-A-TTT-AAT--G-A-A-AT-TT-CCATA-GA-A-AG-A--AA-----GATAGATGTT------A------TAGT-----ATCAAGTGAAATA---AATTTC---AAAgataagtcaataaag
gi|21 : ATAAACCAATT-C-TAAGTTTTACAAAAAAT-----ATACTTGTGAACAA-----TA-AA--------A--------G-TGT-TGC---GATTTTTTT---GTCAGTTTAGAT--AAT--GG-GGGTTGTAT-ATTTCAAT-TCGAT-AA-------AAAC-----------A--GTGTTC----------ATTG----------C--A---AT--AGA-T-TTT-GAT--G-A-A-AC-TTTCC--A-G--ATAT-AG-TA-----GAATGATATT------A------TATT-----ATCAAATAAAATA---AATTTT---AAAatatt
gi|13 : AATG-CACAA-----AGAGGC--T-----ATAC---------A-----TA-AT--------A--------C-TGT-TT--------TTTTT---GTGAATTTAGGT--AAC--GG-GGGTTGTGT-GTTTCAAA-TCAAT-AA-------AAAT--------------GTAATA----------ATCG----------C--T---ATACAGA-T-TTT-GAT--G-A-A-AA-TTTCC--A-GG-AGAA-G--TA-----GAAAGATGTT------T------TTTT-----TTCAAATAAAATA--AATTTaa
gi|19 : tattgattgttctgT----AGCTA-----TACAA--------A--------A-TAC-TG----A---TTTTT---GTGAATTTAGGT--AAC--GG-GGGTTGTTT-GTTTGAAA-TAAAT-GA-------AAAG-----------AA-GTGATA----------ATTG----------C--A---AT--AGA-T-TTT-GAT--A-ACA-AA-TTAAC--A-GA-A-ATGG--TT-----GAAAGATGTT------A------TTTT-----ATGAAATA-AATA--TTTTGTT---AAAgatgcatgcacgacagcgacttcacattgaataaataatatctgaaatccgggcttgtggtatgtcgttccactctttaattagcgtttgacgaaatatttgaacgtcgatttcaataattttattgcgaaattgtacaaaacaataaaagtgttgcgttttttttgtgaatttaggtaacgggggttatttgaatagtagatagatattgttttatgaaatgaaataaattttaaaaaca
gi|13 : cgatttt----AACAA-----TA-AA--------A--------G-TGT-TGC---G---TTTTTTTTGTGAATTTAGGT--AAC--GG-GGGTTATTT-Gccttgcgcattgatgcacgcgcgacagcggatgtatatgtgaatttaggtaattggggttgtacgttgcttttcttaaat
gi|15 : tattgattgttctgaaatttattttatttgaaaaaaaaacatctttctacttctcctggaaattttcatcaaaatctgtatagcgattattacatttttattgatttgaaacacacaacccccgttacctaaattcacaaaaaaaacagtattatgtatagcctctttgtgcattgatgcatgcacgacagcgacttcacattgaataaataatatctgaaatccgggcttgtggtatgtcgttccactctttaattagcgtttgacgaaatatttgaacgtcgatttcaataattttattgcgaaattgtacaa----AACAA-----CA-AA--------------------GT-TAC----------AA---GTGAATTTAGGTATCAAACGG-GGGTTGTAT-GATTCAAA-TCAAT-AA-------AAAT-----------AG-ATGATA----------aatagtagatagatattgttttatgaaatgaaataaattttaaaaaca
gi|3 : tcaatattcttaaaattaactttatttgataatataacatctttctacctttcctgcaaaatgtcatcaaactctattctgactatcacttctttttgtagatttgaaacatacagcccatgtcaccttattcacaaaatcactatcttgtatagtctccttgctcactgatgcccacacGCTA-----TACAA--------G--------C-TAT-TG----G---TTT-T---GTGAATTTAGGT--AAA--GG-GGGTAGTAT-GTTTCAAC-ACAAT-AA-------AAAG-----------AC-GAGATA----------ATCA----------C--AATTAT--AGA-T-TTC-GAT--G-A-A-AA-TTTTC--ATGA-A-AG-G--TA-----GAAAGATGTT------A------TATT-----ACCAAATAAAACG---AATTTC---AAATActgaacagtctactgaagagcaaactttc
gi|2 : gatGCTA-----TACAA--------G--------C-TAT-TG----G---TTT-T---GTGAATTTAGGT--AAA--GG-GGGTAGTAT-GTTTCAAC-ACAAT-AA-------AAAG-----------AC-GAGATA----------ATCA----------C--AATTAT--AGA-T-TTC-GAT--G-A-A-AA-TTTTC--ATGA-A-AG-G--TA-----GAAAGATGTT------A------TATT-----ACCAAATAAAACG---AATTTC---AAATActccttacgcattgatgcacgcacgacagcgacttatcattgaatggataatatttgaaatcaggctttgcggtatgttgttctacaagtgaacaggcgcttgacgaaggacttgaacgttgatttcactaattgtatttggaaattgatagaacatagttaccatagaaacaaattctgaatatttaaatacagataggtcaatgctaaacaaaagtaaaattctaaaagtgttgcgttttttttgtgaatttaggaaacgggggttgtatgtttcaaatcaataaacagaaatgatagtcgcaatagatcttgatgaacaattccagggaagaaagaaacatatttttaaaaaaatggtatgaaacgcgatgatttattgctgtttatctgcttttctaaagtatgtcggt
gi|20 : gatGCTA-----TACAA--------G--------T-TAC-TGA---T---TTTAT---G--AATTTAGGT--AAC--AG-TGGTTGTAT-GTTTCAAA-TCAAT-AA-------AAAT-----------C--GTGATG----------CTGG----------C--A---AT--AGA-T-TGT-GTG--G-A-A-AC-TTTCC--A-GG-AAAA-G--TA-----GAAAGATGTT------A------TATT-----TTCAAATAAAGTA---AATGTT---AAActccttacgcattgatgcacgcacgacagcgacttatcattgaatggataatatttgaaatcaggctttgcggtatgttgttctacaagtgaacaggcgcttgacgaaggacttgaacgttgatttcactaattgtatttggaaattgatagaacatagttaccatagaaacaaattctgaatatttaaatacagataggtcaatgctaaacaaaagtaaaattctaaaagtgttgcgttttttttgtgaatttaggaaacgggggttgtatgtttcaaatcaataaacagaaatgatagtcgcaatagatcttgatgaacaattccagggaagaaagaaacatatttttaaaaaaatggtatgaaacgcgatgatttattgctgtttatctgcttttctaaagtatgtcggtg
gi|26 : cgatttttCAA-----TA-CA--------A--------TATAC-TGA---T---TTTAT---G--AATTTAGGT--CAC--TA-GGACTGTAT-GTTTCAAA-CCAAT-TA-------AAAG-----------AA-GCGATA----------ATCG----------C--A---AT--AGA-T-TTG-GAT--atccttgtgcattggtgcacccacgacagcgaattctcat
gi|11 : ---TTT-T---GTTAATTTAGAT--AAT--GG-AGGTTGTAT-GTTTAAAA-TCAAT-AC-------AAAG-----------AA-GTGATA----------ATTT----------C--A---AT--AGA-T-TTT-GAT--G-A-A-----------A-G-------G--TA-----GAAAGATTAA------A------TATT-----ATCAAATACCATagatacacgg
gi|10 : actaagaaataagcacagagaatcaattagtcatttttttggtattcaaatctaatgaagaaatacacctgaccaaaaaacttttaaaaacgtaacactccgacaaacagcaattaaacatctttatcgatttatatgaaattg---TTT-T---GTGAATTTAGG---TAACTGG-GGTTTGTAT-GTTTCTAA-GTAAT--C-------AAAG-----------AA-GCGATA----------TTTG----------C--A---GT--AGA-T-TTT-TAT--G-A-tcagtaccttatacagccttgtgcattgatgcatgcatgacagcaacttctcagtgaatagatactatttgaaattcgggcttgtggtatttcgttccactcttgaacaagtgcttggcaaagtacttgaacactaatttcaataattttaatgcaagtgtatttaagaatcagagtctcatttcccacaaataaaagcttcgcaatattta
gi|15 : aatttaacgttttccttttcctagaagaaaaaa---TTT-T---GTGAAT--AAGG--TGA--CATGGGCTGTAT-GTTTCAAA-TCTAC-AA-------AAAG-----------AA-GTGATA----------GTCA----------G--A---AT--AGA-G-TTT-GAT--G-A-C-AT-TTTGC--A-GG-AAAG-G--TA-----GAAAGATGTT------A------TATT-----ATCAAATAAAGT---TAATTTT---AAtcagtatcttgtataaacctccttgcgcattgatgtgcgcacgacggcgatattttttacaatccgaccttgtggtatgttgttccgcttttgactaagcgcttgccaaagtacgtacttgaacgttaatttcaaaaactgtattgtaaatatcatagaaacaaaatcagaatatcaaaatgcagataaaccaattcaaacgaaattatacaaacaataagtgttttttatgatttttttgtgtgtttttatttcgtttatttaaattacggagattgtgtgtttcaaataaaaaaagtgattaacgctatagatatttaatgatatttcaaataaatttaaaaagatgtcatataatcaaataaatagatttaaa
gi|14 : tcaatattc---TTT-T---GTGAATTTAGGT--AAC--GT-GATTTGTAT-AGTTTAAA-TCAAC-AA-------AAAG-----------AA-GTCAAA----------ACTG----------C--A---AT--AGA-T-TTG-GAT--G-A-A-AA-TTTCC--A-G-----------------GGAATATGTT------A------TATC-----ATCAAATAAAAtcactatcttgtatagtctccttgctcactgatgcccacacaacaacaaagttacaagtgaatttaggtatcaaacgggggttgtatgattcaaatcaataaaaatagatgatactgaacagtctactgaagagcaaactttc
gi|7 : cgattcttttaattttccTGT---GTGAAGTTAGGT---AA--TG-GGCTTGTAT-AATTCAAA-TCAAT-AA-------AAAG-----------AA-GTGGTA----------ATCG----------C--T---AT--AGA-T-tcagtatcttgtatagccaccttgcgagttgatgcacgatggctgtatgtttcaatcaataaaaagaagcgttaatcgtaaaagatattgatgaaaatttgcacgaaaagtaaaaggatgttatattatcaaataaaagaaagtttaaaaaaatattgataaagaactcaatgtcttatttatcgccgttt
gi|4 : tttaatcgatatcttaaccttcattttatttaataatatcacgcTAAGA--TAA--TG-ATTTTGTGT-GTTTCAAA-TCAAT-AA-------AAAGTAGTAATAAAGAA-ATAATA----------ATCG----------C--A---AC--CAA-T-TTT-GAT--G-A-A-AC-TTTCC--C-GG-AAAG-G--TA-----GGAAGATGCT------A------TATT-----CTCAAATAAAATA---AATTTC---AAgtcagtatcttgtatagtcttcttgcgcattgatacacgcatgacagcaactcctcgttaattggttgatatatggaatccgggcgcgtggtattttgttccactcttcaacaagcggttaacggttttcagtaaaattattgctaaattgaaagaaaaactatcatggaaagaatatctgaatattaaaatacagataaatcaactctaaatgaaattatacaaacaataaaagtgtttcgttttttgtgattttaggttatggggattgaatgtttcaaatcaataaaaataaatgataatcacaacatatttttaatgggaaattccagtaaagatagaaaatgtaatattactaaatcaaataaatataaaaaaaatc
gi|5 : TAGGT--CAC--AA-GGGTTGTAT-GTTTCAAA-CCAAT-AA-------CAAG-----------AA-GTGATA----------ATCG----------C--A---TT--AGA-T-TTT-GGT--G-A-A-AC-TATCC--A-GG-A-ATGA--TA-----GAAAGA--TG------A------TATTTA---ATCAAATAAAATG---AATTTT---AAAtagcctccttgtgcatcgatgcacgcacggtagcgacttctcattgaatcaacactatttgaaatccgggcttgttttaagttgttccgctctttaacaagcgtttgacgaaatatttgaacgttgatttcaataattttcctgcgaaattgaaataacataccactgaatcaaaatctgaatatcaaaatacagataaaccaattctaaacaaaattatacaaacaataacagtgttgcatttattggtgaatttatgttacgagtgctgtatgtttcaaatcaataaaaagtagtaatcattgcaataggttttgacgaaacttttcagagatggtagaaagatattatattatcaaagaaaatgaaatttaaaacatgataatgaactcaatcttttattgcagtttaccggatggttgcgtttcta
gi|17 : gatttttt--TAAC-GG-GGGTTGTAT-GTTTCAAA-AAAATTAA-------AAAG-----------AA-GTGATA------------------------------------GA-T-ATT-GAT--G-A-A-ACTTTACA--A-AA-AC-T-A--TA-----GAAAATTTTT------T------TATT-----ATCAAATA-AATgtcataaaatcagtatcttgaatagcctccttgtgcactgatgcatgcatgacagcaacttctcactgaatggatattatttgaaatctgggcgtgtggtatgttattccattcttgaacaagcacttaacaaagtacttgaacgttcccaggtggcagttggcgtatgtaaacataatttttcagaaaataccatagaaacaaattctgaatatcaaactacggataaaccaattcttaacgaaattatacaaacaataaaagtgttacattgttttgtgaatttaggtaaagtgggttttatgtttcaaatcaataaaaagatgtgataatcgcaatatattttgatgaaactttccaggaaaggtaggaagatgttataatagtattatcaaaaaaaa
gi|9 : catttttaaaaaataaatattgtatttcataaagtaacatcttttaaccatgtctgtaaattttcttcaaaatcaattgcgatctatgacgattatcacttctttttattgatttgattcataaaacattgg--GG-GGGTCGTAT-GTTTAAAA-TTAAT-AA-------AAAG-----------AG-GTGATA----------ATCA----------C--A---AT--AGA-T-TCT-GAT--G-A-A-AA-TTTCC--A-GG-A-ATGA--TA-----GAGAGATGAT------A------TATT-----ATCCAATAAAATA--CA-TTTT---AAATAtaaaaataaaaatcga
gi|8 : acctccttacgtaggtgcatgcatgtaacatcctggtatcccgttacgtaggtacatgtcggtaacatcctggtatcccgttacgtaggtacatgtcggtaatatcctggtatttccttacataggtgtcgtatgtctttataagtagctgccttcaaagacctgttcaatcctcacatacaccgaacgactttaaaaacgatattctcagagaaacagcaataaaactttaagatctttatcgttttgttgtttttttttgtttgtttttttgataatataacattgacattttctggaaattttcatcaaaatatattgctatactcactttttttttattaatttgaaaccaccttgcgcattgatgcac--GG-GGGTCGTAT-GTTTAAAA-TTAAT-AA-------AAAG-----------AG-GTGATA----------ATCA----------C--A---AT--AGA-T-TCT-GAT--G-A-A-AA-TTTCC--A-GG-A-ATGA--TA-----GAGAGATGAT------A------TATT-----ATCCAATAAAATA--CA-TTTT---AAATAat
gi|1 : acctccttacgtaggtgcatgcatgtaacatcctggtatcccgttacgtaggtacatgtcggtaacatcctggtatcccgttacgtaggtacatgtcggtaatatcctggtatttccttacataggtgtcgtatgtctttataagtagctgccttcaaagacctgttcaatcctcacatacaccgaacgactttaaaaacgatattctcagagaaacagcaataaaactttaagatctttatcgttttgttgtttttttttgtttgtttttttgataatataacattgacattttctggaaattttcatcaaaatatattgctatactcactttttttttattaatttgaaaccaccttgcgcattgatgcacG-GGATTTTAT-GTTTCAAAATCAAT-AA-------AAAG-----------AA-ATGAAA----------ATCG----------C--A---AT--AAA-T-TTTGGAA--G-A-A-AA-TTTCC--A-GG-AAAG-G--AA-----GAAAGATGCT------T------TATC-----ATCAAATAAAATA---AATTTC---AAAat
gi|14 : tnnnnnnnnnnaaacattaccctcagataaacacaataaaacatcaagttctttattgatgttGGCTGTAT-GTTTCAA--TCAAT-AA-------AAAG-----------AA-GCGTTA----------ATCG----------T--A---AA--AGA-T-ATT-GAT--G-A-A-AA-TTTGC--ACGA-AAA--G--TA-----AAAGGATGTT------A------TATT-----ATCAAATAAAAGA--AAGTTTA---AAAnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnctcttgaataaggtgcccatttttacgattcagtgatttcaataattttattgcaaaattatacaaaactaaccatagaaacaaaatctgaatatcaaaatacagataaaccaatacttaacaaaattatacaaacaatagaagtgttgcatttttttgtgaactaagttaatgggggttgtaagttttaaatcaacagaaagaagtgataatcacaatagattttaatgaaagtttccaggaaagataaaagattctattttattgaataaataaatttc
gi|23 : cgattcttttaattttccttttatttgatgatataacatattccctggaaattttcatccaaatctattgcagttttgacttctttttgttgatttaaactatacaaatcacgttacctaaattcacaaaatcagtatcttgtatagccaccttgcgagttgatgcacgatGATTATATAGTT---AA-TCAAT-AA-------AAAG-----------AA-GCGATA----------ATCA----------C--A---CT--AGA-T-TTT-AAT--G-A-A-AA-TTTCC--A-GG-A-AT-AG-TA-----GAAAGATGTAACTGTTA------TATA-----ATCAAATAAAATA---AATTTC---AAAaaatattgataaagaactcaatgtcttatttatcgccgttt
gi|17 : attgattttGTTTTAT-GAATCAAA-TCAAT-AA-------AAAG-----------AA-GTGATAATCGTCATAGATCG----------C--A---AT--TGA-T-TTT-GAA--G-A-A-AA-TTTAC--A-G--ACAT-GGTTA------AAAGATGTT------A------CTTT-----ATGAAATACAATATTTATTTTTTAAAAATG
gi|25 : TTGTAT-GTTTCAAT-TCAAT-AA-------AAAG-----------AA-GCAATA----------TTCA----------C--A---AT--AAA-A-TTT-GAT--A-A-A-AC-TTCTC--A-GA-AAAA-A--TA-----GAAAGATATT------T------TATA-----ATAAAATAAAATA--AACTTCA---AAATattggtaacgggggttgtatgtttcaaaaaaattaaaaagaagtgatagatattgatgaaactttacaaaaactatagaaaatttttttattatcaaataaattaaaaataaaaatcga
gi|9 : t-GTTTCAAA-TTAAT-AA-------AAAA-----------AAAGTGAGT----------ATAG----------C--A---AT--ATA-T-TTT-GAT--G-A-A-AA-TTTCC--A-GA-AAAT-G--T---------CAATGTT------A------TATT-----ATCAAAtatt
gi|8 : acctccttacgtaggtgcatgcatgtaacatcctggtatcccgttacgtaggtacatgtcggtaacatcctggtatcccgttacgtaggtacatgtcggtaatatcctggtatttccttacataggtgtcgtatgtctttataagtagctgccttcaaagacctgttcaatcctcacatacaccgaacgactttaaaaacgatattctcagagaaacagcaataaaactttaagatctttatcgttttgttgtttttttttgtttgtttt-GTTTCAAA-TTAAT-AA-------AAAA-----------AAAGTGAGT----------ATAG----------C--A---AT--ATA-T-TTT-GAT--G-A-A-AA-TTTCC--A-GA-AAAT-G--T---------CAATGTT------A------TATT-----ATCAAAcaccttgcgcattgatgcacgggggtcgtatgtttaaaattaataaaaagaggtgataatcacaatagattctgatgaaaatttccaggaatgatagagagatgatatattatccaataaaatacattttaaataaat
gi|24 : acctccttacgtaggtgcatgcatgtaacatcctggtatcccgttacgtaggtacatgtcggtaacatcctggtatcccgttacgtaggtacatgtcggtaatatcctggtatttccttacataggtgtcgtatgtctttataagtagctgccttcaaagacctgttcaatcctcacatacaccgaacgactttaaaaacgatattctcagagaaacagcaataaaactttaagatctttatcgttttgttgtttttttttgtttgttttA-TCAAT-GATTCACCGAAAG-----------AA-GTGATA----------ATCGTCATAGATCGC--A---AT--TGA-T-TTT-GAA--GCA-A-AT-TTAC---A-GA--CAT-GGTTA------AAAGATGTT------A------CTTA-----ATAAAATACAATA--TTTTTTT---caccttgcgcattgatgcacgggggtcgtatgtttaaaattaataaaaagaggtgataatcacaatagattctgatgaaaatttccaggaatgatagagagatgatatattatccaataaaatacattttaaataaat
gi|22 : taCAAT-AA-------AAAG-----------AG-GTGATA----------ATCG----------C--A---AC--AGA-T-TTT-GAT--G-A-A-AT-TTTCC--A-GG-AAAG-T--TA-----GACAGATGTT------A------TATT-----TTCAAATAAAATA---AATTCC---AAAgtaa
gi|30 : TA----------ATCA----------C--A---AT--ATA-A-TCT-GAT--A-A-G-AA-TATCC--A-GG-AAAG-G--TA-----GAAAGATATT------A------TATC-----ATCAattatcgatacagtccgtaatgtttctatgctgtttatctgagttatatgtttctaaagtagta
gi|35 : --TA-----GACAGATGTA------A------TATT-----ATCAAATAAAATA---AATTTC---AAA
8 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|27 ): CCCAATCTGATGACCATACACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTTT
Unaligned ( gi|28 ): ATTAGGTGTTTATATAGAATATTAGCCAAATTAAACTAAAAGATAGCCATCCTTAAAAGAATATC
Unaligned ( gi|29 ): AAAGAACTTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTGTATGT
Unaligned ( gi|31 ): ATACACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
Unaligned ( gi|32 ): AAGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGT
Unaligned ( gi|33 ): TGAAAGACTAGAAACATTACCCTCAGATAAACACAATAAAACATCAAGTTCTTTATTG
Unaligned ( gi|34 ): ACACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
Unaligned ( gi|36 ): AAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
Alignments
lowQualScore : 1111111111 11111111111 222222222222 111 111111 1111111111 222222 33333333 22222222222222222 111 11111
lowQualScore : 1 2 2 22 444444 333 1 1 1 22 555 4444444444 3 22222222222 22 1 3 1 1 4444 22 1 444 666666666666 444 2 1 3 777 000 99999 3 2 111111 7777 88888 44 4444444444 1 6 2 0 000000 55 44 44 88888 1 22222222 66666 2 2 00000000000000000 777 33 2 555 33333 5555 2 2 5555 33 33 2 2 6 2 0 222 77777 3 2 2 888888 22 3 3 4 4
lowQualScore : . . . .. ...... ... . . . .. ... .......... . ........... .. . . . . .... .. . ... ............ ... . . . ... ... ..... . . ...... .... ..... .. .......... . . . . ...... .. .. .. ..... . ........ ..... . . ................. ... .. . ... ..... .... . . .... .. .. . . . . . ... ..... . . . ...... .. . . . .
lowQualScore : 0 0 0 55 888888 000 6 7 7 22 666 0000000000 2 33333333333 11 7 2 7 9 0000 66 9 444 555555555555 777 7 0 5 666 000 11111 6 1 111111 1111 33333 66 3333333333 2 7 2 2 555555 00 66 77 33333 2 00000000 11111 9 9 00000000000000000 999 99 9 000 99999 7777 5 5 3333 44 77 7 7 6 9 4 000 11111 6 4 9 222222 44 1 6 7 7
consensus : TCGATTTTTTTGA-A-ATTT--ATTTTATTTGATAATATAACA------TCTTTCTACCTTTCCTGGAA---ATTT-TCATC-AAAATCT--AT---TG----------CGATTATCAC-TTCTTT-----------TTAT--TGATTT-GAAAC-ATACAA-CCCCC-GT----TACCTAAATT--CAC-AAAAT---CAGTATCTTGTATAG----C--CT---T---G-CGCATTGATGCACGCACGACAGCGACTTCTCATTGAATGGATAATATTTGAAATCCGGGCTTGTGGTATGTTGTTCCA--CTCTTGAACAAG---CGC-----TTG-ACGAAGTAC----TTGAACGTT----GAT-----TT--C---------AATAATTTTATTGCGAAATTG-AAAGAACA----TAC--CATAGAAACAAAN-TCTGAATATCAAAATACAGATAAACCAATT-CTAA-----ACGAAA--T-----ATAC----A-AA-CAATAAAAGTGT-----------------TGCG---T--TT-T---T-----GTGAATTTAGGTA----ACGGGGGTTGTATGTTTCAAATCAAT-AAAAAGA-AGTG----AT--AATCGC--AATAGA-T-TTTGATGAAANTTTCCA-GGAAAGATA-----GAAAGATGTT-A------TATTATCAAATAAAAT-A-AATTTNAAACGA
Reference ( family-3390 ) : TCGATTTNTTTGA-A-ATTT--ATTTTATTTGATAATATAACA------TCTTTCTACCTTTCCTGGAA---ANTT-TCATC-AAAATCT--AT---TG----------CGATTATCAC-TTCTTT-----------TTAT--TGATTT-GAAAC-ATACAA-CCCCC-GT----TACCTAAATT--CAC-AAAAT---CAGTATCTTGTATAG----C--CT---T---G-CGCATTGATGCACGCACGACAGCGACTTCTCATTGAATGGATAATATTTGAAATCCGGGCTTGTGGTATGTCGTTCCG--CTCTTGAACAAG---CGC-----TTG-ACGAAGTAT----TTGAACGTT----GAT-----TT--C---------NATAATTTTATTGCGAAATTG-ANAGAACA----TAC--CATAGAAACAAAN-TCTGAATATCAAAATACAGATAAACCAATT-CTAA-----ACGAAA--T-----ATAC----A-AA-CAATAAAAGTGT-----------------TGCG---T--TT-T---T-----GTGAATTTAGGTA----ACGGGGGTTGTATGTTTCAAATCAAT-AAAAAGA-AGTG----AT--AATCGC--AATAGA-T-TTTGATGAAANTTTCCA-GGAAANGTA-----GAAAGATGTT-A------TATTATCAAATAAAAT-A-AATTTCAAATAA
gi|1 : TTGATGTTTTTGA-A-ATTT--ATTTTATTTGATGATAAAGCA------TCTTTCTTCCTTTCCTGGAA---ATTT-TCTTCCAAAATTT--AT---TG----------CGATTTTCAT-TTCTTT-----------TTAT--TGATTTTGAAAC-ATAAAATCCCNN-NN----NNNNNNNNNN--NNN-NNNNN---NNNNNNNNNNNNNNN----N--NN---N---N-NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTCTTGAATAAGG--TGCCCATTTTT-ACGA---------TT---CAGT----GAT-----TT--C---------AATAATTTTATTGCAAAATTATACAAAACT----AAC--CATAGAAACAAAA-TCTGAATATCAAAATACAGATAAACCAATA-CTTA-----ACAAAA--TT----ATAC----A-AA-CAATAGAAGTGT-----------------TGCA---T--TT-T---TTT---GTGAACTAAGTTA----ATGGGGGTTGTAAGTTTTAAATCAAC-AGAAAGA-AGTG----AT--AATCAC--AATAGA-T-TTTAATGAAAGTTTCCA-GGAAAGATA------AAAGATTCT-A------TTTTATTGAAT-AAAT-A-AATTTC
gi|10 : tnnnnnnnnnnaaacattaccctcagataaacacaataaaacatcaagttctttaAATTTAACG------TTTTCCT---TTTCCTAGAAGAAAAAA-TCATA-AAAATCT--AC---TG----------CAAATATCGC-TTCTTT-----------G-AT--TACTTA-GAAAC-ATACAA-ACCCCAGT----TACCTAAATT--CAC-AAAAT---CAGTATCTTGTATAAACCTC--CT---T---G-CGCATTGATGTGCGCACGACGGCGA----------------TATTTTTTACAATCCGACCTTGTGGTATGTTGTTCCG--CTTTTGACTAAG---CGC-----TTG-CCAAAGTACGTACTTGAACGTT----AAT-----TT--C---------AAAAACTGTATTGTAAA-----------------TAT--CATAGAAACAAAA-TCAGAATATCAAAATGCAGATAAACCAATT-C-AA-----ACGAAAT-T-----ATAC----A-AA-CAAT--AAGTGTTTTTTATGATTTTTTTGTGTG---T--TT-T---TATTTCGTTTATTTAAATT----ACGGAGATTGTGTGTTTCAAAT------AAAAAA-AGTG----AT--TAACGC--TATAGA-TATTTAATGATA-TTTCAA-ATAAATTTA-----AAAAGATGTC-A------TATAATCAAAT-AAAT-A-GATTTAAA
gi|11 : TCGATTTATATGA-A-ATTG--ATGGTATTTGATAATATTTAA------TCTTTCTACCTTTC----------------ATC-AAAATCT--AT---TG----------AAATTATCAC-TTCTTT-----------GTAT--TGATTT-TAAAC-ATACAA-CCTCC-AT----TATCTAAATT--AAC-AAAAT---CAGTACCTTATACAG----C--CT---T---G-TGCATTGATGCATGCATGACAGCAACTTCTCAGTGAATAGATACTATTTGAAATTCGGGCTTGTGGTATTTCGTTCCA--CTCTTGAACAAG---TGC-----TTG-GCAAAGTAC----TTGAACACT----AAT-----TT--C---------AATAATTTTAATGCAA
gi|12 : actaagaaataagcacagagaatcaattagtcatttttttggtattcaaatctaatgaagaaatacacctgaccaaaaaacttttaaaaacgtaacactccgacaaacagcaattaaacatctttaTCTTT-----------TTATCTTTCCTT-GAAATTGT-CA---CCTT-GT----TGTC-AAATTGTCAC-AAAAT---CATTATCTTGTATAG----CATCC---T---GACAAATTGATGCACACACAACATTTACTTCTCATTGAATGGTTAATATTTGAAATCCAGACTTGTGGTATGTTGTTGCA--CTCTTTAACTATATCCAC-----TTTCACGG----T----TTGG----T----GAT-----TT--C---------ATTAATTTTATTACAAAATTG-AAAGAAAA----TAC--CAAAGAAACAATA-TCTGAATATCAAAACACAGATAAACAAATT-CTAA-----ACGAAA--TTGATAATAC----A-AA-CAATAAAAGTGT-----------------TGCA---T--TT-T---T-----GTGAATTTAGGTA----ATGGGGGTTGTATGTTTCAAAATAAT-AAAAAGA-AGTG----AT--AATCGC--AACAGA-T-GTTGATGAAAATTTCCA-GGAAATGTAAAAACGAAAGATTTT-A------TACTATCAAATAAAAT-A-AATCTAAAAgtgtatttaagaatcagagtctcatttcccacaaataaaagcttcgcaatattta
gi|13 : aaatttatatatgtatttaTTGATTGTTCTGA-A-ATTT--ATTTTATTTGAAAAAAAAACA------TCTTTCTACTTCTCCTGGAA---ATTT-TCATC-AAAATCTGTAT---AG----------CGATTATTAC---ATTT-----------TTAT--TGATTT-GAAAC-ACACAA-CCCCC-GT----TACCTAAATT--CAC-AAAAAAAACAGTATTATGTATAG----C--CTCTTT---G-TGCATTGATGCATGCACGACAGCGACTTCACATTGAATAAATAATATCTGAAATCCGGGCTTGTGGTATGTCGTTCCA--CTCTTTAATTAG---CGT-----TTG-ACGAAATAT----TTGAACGTC----GAT-----TT--C---------AATAATTTTATTGCGAAATTGTACAAAACA----
gi|13 : taCGAAA--TT----GTAC----A-AAACAATAAAAGTGT-----------------TGCG---T--TT-TTTTT-----GTGAATTTAGGTA----ACGGGGGTTATTTG-----AAT-AGT-AGATAGATATTGTTTTATGAAAT-GA--AATAAA-T-TTTAAataaaagtgttgcgttttttttgtgaatttaggtaacgggggttatttgaatagtagatagatattgttttatgaaatgaaataaattttaaaaaca
gi|14 : tattgattgttctgaaatttattttatttgaaaaaaaaacatctttctacttctcctggaaattttcatcaaaatctgtatagcgattattacatttttattgatttgaaacacacaacccccgttacctaaattcacaaaaaaaacagtattatgtatagcctctttgtgcattgatgcatgcacgacagcgacttcacattgaataaataatatctgaaatccgggcttgtggtatgtcgttccactctttaattagcgtttgacgaaatatttgaacgtcgatttcaataattttattgCGATTCTTTT---A-ATTTTCCTTTTATTTGATGATATAACA------T------A--TTCCCTGGAA---ATTT-TCATC-CAAATCT--AT---TG----------CAGTTTTGAC-TTCTTT-----------TTGT--TGATTT-AAACT-ATACAA-ATCAC-GT----TACCTAAATT--CAC-AAAAT---CAGTATCTTGTATAGCCA-C--CT---T---G-CGAGTTGATGCACGaaaca
gi|14 : ATTTTTTTAA-A-CTTT--CTTTTATTTGATAATATAACA------TCCTTTTACTTTTCGTGCAA---ATTT-TCATC-AATATCT--TT---TA----------CGATTAACGC-TTCTTT-----------TTAT--TGA-TT-GAAAC-ATACAG-CCATC-G-----TGCATCAACT--CGC-AAatggctgtatgtttcaatcaataaaaagaagcgttaatcgtaaaagatattgatgaaaatttgcacgaaaagtaaaaggatgttatattatcaaataaaagaaagtttaaaaaaatattgataaagaactcaatgtcttatttatcgccgttt
gi|15 : cgattcttttaattttccttttatttgatgatataacatattccctggaaattttcatccaaatctattgcagttttgacttctttttgttgatttaaactatacaaatcacgttacctaaattcacaaaatcagtatcttgtatagccaccTCAATATTCTTAA-A-ATTA--ACTTTATTTGATAATATAACA------TCTTTCTACCTTTCCTGCAA---AATG-TCATC-AAACTCT--AT---TC----------TGACTATCAC-TTCTTT-----------TTGT--AGATTT-GAAAC-ATACAG-CCCAT-GT----CACCT-TATT--CAC-AAAAT---CACTATCTTGTATAGTCT-C--CT---T---G-CTCACTGATGCCCACACAACAACAAattgataaagaactcaatgtcttatttatcgccgttt
gi|15 : AC----ACAA-CAACAAA---GT-----------------TACA---A---------------GTGAATTTAGGTATCAAACGGGGGTTGTATGATTCAAATCAAT-AAAAATA-GATG----AT--Aagttacaagtgaatttaggtatcaaacgggggttgtatgattcaaatcaataaaaatagatgatactgaacagtctactgaagagcaaactttc
gi|15 : tcaatattcttaaaattaactttatttgataatataacatctttctacctttcctgcaaaatgtcatcaaactctattctgactatcacttctttttgtagatttgaaacatacagcccatgtcaccttattcacaaaatcactatcttgtatagtctccttgctcactgatgcccTATCAT-CTATTT-----------TTAT--TGATTT-GAATC-ATACAA-CCCCC-GTTTGATACCTAAATT--CAC-ctgaacagtctactgaagagcaaactttc
gi|16 : tcaatattcttaaaattaactttatttgataatataacatctttctacctttcctgcaaaatgtcatcaaactctattctgactatcacttctttttgtagatttgaaacatacagcccatgtcaccttattcacaaaatcactatcttgtatagtctccttgctcactgatgcccacacaacaacaaagttacaaATTTTATTGCAAAATTG-AAAGAAAA----AAAAACATAAAAACAAAA-TTTGAATATCAAAATACATATAAACCCATT-CTAA-----ACAAAAG-T-----ATAA----A-AA-CAAAAATAGTGT-----------------TACG---T--TT-T---T-----GT-AATTTAGGTA----GCGAGAGTTGTATGTTTCAAATCAAT-AAAAAGA-TGTA----AT--AATTGC--AATAGT-A-TTTAATGAAA-TTTCCATAGAAAGAAA-----GATAGATGTT-A------TAGTATCAAGTGAAAT-A-AATTTCAAActgaacagtctactgaagagcaaactttc
gi|17 : actT--ATTGTATTTCATAAAGTAACA------TCTTTTAACCATGTCTGTAA---ATTT-TCTTC-AAAATCA--AT---TGCGATCTATGACGATTATCAC-TTCTTT-----------TTAT--TGATTT-GATTC-ATAAAA-Catatt
gi|17 : catttttaaaaaataaaGGTA----ACGGGGGTTGTATGTTTCAAAAAAATTAAAAAGA-AGTG----AT--A-----------GA-T-ATTGATGAAACTTTACA-AAAACTATA-----GAAAATTTTT-T------TATTATCAAATAAATT-A-AAattggtaacgggggttgtatgtttcaaaaaaattaaaaagaagtgatagatattgatgaaactttacaaaaactatagaaaatttttttattatcaaataaattaaaaataaaaatcga
gi|18 : catttttaaaaaataaatattgtatttcataaagtaacatcttttaaccatgtctgtaaattttcttcaaaatcaattgcgatctatgacgattatcacttctttttattgatttgattcataaaacatt----GAT-----TT--C---------AATAATTCTATTGCAAAAACG-AAATAAAA----TAC--CATAGAA-CAGACATCTTAATATCAAAGTACAGATAAACCAATAACTAA-----AC-AGA--T-----TTAT----A-------TA---GTGT-------------------CG---T--TT-G---G-----GGGATTTTAAGTA----ACGGGGGATGTATTGTTCAAATCAAT-AAAAAGA-ATTG----AT--AACCGCATAATAA----TTTGATAAATATTTCAA-GAAAAAG--------------GTTAA------CATTATGAAATAAAAT-A-AATTTaataaaaatcga
gi|19 : CGATTTTTTTAACA-AAAT--ATTT-ATTTCATAAAATAACA------TCTTTCAACCATTTCTGTTA---ATTTGTTATC-AAAATCT--AT---TG----------CAATTATCAC-TTCTTT-----------TCAT--TTATTT-CAAAC-AAACAA-CCCCC-GT----TACCTAAATT--CACAAAAAT---CAGTATTTTGTATAGCTA-C--CT---T---G-CGCATTGATGCACGCGCGACAGCGtgataagtcaataaag
gi|19 : AAC-GTACAA-CCCCA-AT----TACCTAAATT--CAC-Agatgtatatgtgaatttaggtaattggggttgtacgttgcttttcttaaat
gi|2 : cgatttttttaacaaaatatttatttcataaaataacatctttcaaccatttctgttaatttgttatcaaaatctattgcaattatcacttcttttcatttatttcaaacaaacaacccccgttacctaaattcacaaaaatcagtattttgtatagctaccttgcgcattgatgcacgcgcgacagcggatgtataGATTTATTTGA-A-ATTC--GTTTTATTTGGTAATATAACA------TCTTTCTACCTTTCATGAAA---ATTT-TCATC-GAAATCT--ATAATTG----------TGATTATCTC-GTCTTT-----------TTAT--TGTGTT-GAAAC-ATACTA-CCCCC-TT----TACCTAAATT--CAC-AAAAC---CAATAGCTTGTATAG----C--CTCCTT---A-CGCATTGATGCACGCACGACAGCGACTTATCATTGAATGGATAATATTTGAAATCAGGCTTTGCGGTATGTTGTTCTA--CAAGTGAACAGG---CGC-----TTG-ACGAAGGAC----TTGAACGTT----GAT-----TT--C---------ACTAATTGTATTTGGAAATTG-ATAGAACATAGTTAC--CATAGAAACAAAT-TCTGAATATTTAAATACAGATAGGTCAATG-CTAA-----ACAAAA--------GTA-----A-AA-TTCTAAAAGTGT-----------------TGCGTTTT--TT-T---T-----GTGAATTTAGGAA----ACGGGGGTTGTATGTTTCAAATCAAT-AAACAGA-AATG----AT--AGTCGC--AATAGA-T-CTTGATGAACAATTCCA-GGGAAGAAA-----GAAA-----C-A------TATTTTTAAA-AAAAT-gcttttcttaaat
gi|20 : CGATTTTTTTTA-ACATTT--ACTTTATTTGAAAATATAACA------TCTTTCTACTTTTCCTGGAA---AGTT-TCCAC-ACAATCT--AT---TG----------CCAGCATCAC--GATTT-----------TTAT--TGATTT-GAAAC-ATACAA-CCACT-GT----TACCTAAATT--CAT-AAAAT---CAGTAACTTGTATAGCAT-C--CT---T---G-TGCATTGGTGCACCCACGACAGCGAATTCTCATggtatgaaacgcgatgatttattgctgtttatctgcttttctaaagtatgtcggtg
gi|21 : ATAAACCAATT-CTAAGTTTTACAAAAAAT-----ATACTTGTG-AA-CAATAAAAGTGT-----------------TGCGATTT--TT-T---T-----GTCAGTTTAGATA----ATGGGGGTTGTATATTTCAATTCGAT-AAAAACA--GTG----TT--CATTGC--AATAGA-T-TTTGATGAAACTTTCCA-GATATAGTA-----GAATGATATT-A------TATTATCAAATAAAAT-A-AATTTTAAA
gi|22 : TCGATAATTTTGG-A-ATTT--ATTTTATTTGAAAATATAACA------TCTGTCTAACTTTCCTGGAA---AATT-TCATC-AAAATCT--GT---TG----------CGATTATCAC-CTCTTT-----------TTAT--TGaa
gi|23 : TTGATTTTTTTGA-A-ATTT--ATTTTATTTGATTATATAACAGTTACATCTTTCTACTATTCCTGGAA---ATTT-TCATT-AAAATCT--AG---TG----------TGATTATCGC-TTCTTT-----------TTAT--TGATT----AACTATATAA-TCtacagtccgtaatgtttctatgctgtttatctgagttatatgtttctaaagtagta
gi|24 : aT--ATTGTATTTTATTAAGTAACA------TCTTTTAACCATGTCTGTAA---ATTT-GCTTC-AAAATCA--AT---TGCGATCTATGACGATTATCAC-TTCTTTCGGTGAA----TCAT--TGAT
gi|25 : taaaaaaaaTTGTATGTTTCAATTCAAT-AAAAAGA-AGCA----AT--ATTCAC--AATAAA-A-TTTGATAAAACTTCTCA-GAAAAAATA-----GAAAGATATT-T------TATAATAAAATAAAAT-A-AACTTCAAAgtaa
gi|26 : tATC-CAAATCT--AT---TG----------CGATTATCGC-TTCTTT-----------TAAT--TGGTTT-GAAAC-ATACAG-TCCTA-GT----GACCTAAATT--CAT-AAAAT---CAGTATATTGTATattatt
gi|3 : GATTTATTTGA-A-ATTC--GTTTTATTTGGTAATATAACA------TCTTTCTACCTTTCATGAAA---ATTT-TCATC-GAAATCT--ATAATTG----------TGATTATCTC-GTCTTT-----------TTAT--TGTGTT-GAAAC-ATACTA-CCCCC-TT----TACCTAAATT--CAC-AAAAC---CAATAGCTTGTATAG----C--CTCCTT---A-CGCATTGATGCACGCACGACAGCGACTTATCATTGAATGGATAATATTTGAAATCAGGCTTTGCGGTATGTTGTTCTA--CAAGTGAACAGG---CGC-----TTG-ACGAAGGAC----TTGAACGTT----GAT-----TT--C---------ACTAATTGTATTTGGAAATTG-ATAGAACATAGTTAC--CATAGAAACAAAT-TCTGAATATTTAAATACAGATAGGTCAATG-CTAA-----ACAAAA--------GTA-----A-AA-TTCTAAAAGTGT-----------------TGCGTTTT--TT-T---T-----GTGAATTTAGGAA----ACGGGGGTTGTATGTTTCAAATCAAT-AAACAGA-AATG----AT--AGTCGC--AATAGA-T-CTTGATGAACAATTCCA-GGGAAGAAA-----GAAA-----C-A------TATTTTTAAA-AAAAT-tgagatacacgg
gi|30 : TGATGATATAATA------TCTTTCTACCTTTCCTGGAT---ATTC-TTATC-AGATTAT--AT---TG----------TGATTAggtatgaaacgcgatgatttattgctgtttatctgcttttctaaagtatgtcggt
gi|35 : TCGATTTCTTTGA-A-ATTT--ATTTTATTTGATAATATTACA------TCTGTCTACCTT
gi|4 : taTTGA-A-ATTT--ATTTTATTTGAGAATATAGCA------TCTTCCTACCTTTCCGGGAA---AGTT-TCATC-AAAATTG--GT---TG----------CGATTATTAT-TTCTTTATTACTACTTTTTAT--TGATTT-GAAAC-A------------------------------CAC-AAAAT---CATTATCTT--ATAG----C--CTCCTT---G-TGCATCGATGCACGCACGGTAGCGACTTCTCATTGAATCAACACTATTTGAAATCCGGGCTTGTTTTAAGTTGTTCCG--CTCTTTAACAAG---CGT-----TTG-ACGAAATAT----TTGAACGTT----GAT-----TT--C---------AATAATTTTCCTGCGAAATTG-AAATAACA----TAC--CACTGAATCAAAA-TCTGAATATCAAAATACAGATAAACCAATT-CTAA-----ACAAAAT-T-----ATAC----A-AA-CAATAACAGTGT-----------------TGCA---T--TTAT---TG----GTGAATTTATGTT----ACGAGTGCTGTATGTTTCAAATCAAT-AAAAAGT-AGTA----AT--CATTGC--AATAGG-T-TTTGACGAAACTTTTCA-GAGATGGTA-----GAAAGATATT-A------TATTATCAAAGAAAATGA-AATTTAAAAC
gi|5 : TTTTTTTAA-A-ATTC--ATTTTATTTGATTAAATATCA------TCTTTCTATCATTCCTGGAT---AGTT-TCACC-AAAATCT--AA---TG----------CGATTATCAC-TTCTTG-----------TTAT--TGGTTT-GAAAC-ATACAA-CCCTT-GT----GACCTAG--T--CAT-AAAAT---CAGTATCTTGAATAG----C--CTCCTT---G-TGCACTGATGCATGCATGACAGCAACTTCTCACTGAATGGATATTATTTGAAATCTGGGCGTGTGGTATGTTATTCCA--TTCTTGAACAAG---CAC-----TTA-ACAAAGTAC----TTGAACGTTCCCAGGTGGCAGTTGGCGTATGTAAACATAATTT----------TTC-AGAAAA------TAC--CATAGAAACAAAT-TCTGAATATCAAACTACGGATAAACCAATT-CTTA-----ACGAAAT-T-----ATAC----A-AA-CAATAAAAGTGT-----------------TACA---TTGTT-T---T-----GTGAATTTAGGTA----AAGTGGGTTTTATGTTTCAAATCAAT-AAAAAGA-TGTG----AT--AATCGC--AATATA-T-TTTGATGAAACTTTCCA-GGAAAGGTA-----GGAAGATGTT-ATAATAGTATTATCAAAAAAAAtgataatgaactcaatcttttattgcagtttaccggatggttgcgtttcta
gi|6 : gattTCGATTTATTTGA-A-ATTT--ATTTTATTTAATAATATAACA------TTTTGTTACCTTTCCTGTAA---AATT-TCATC-AAAATCT--AT---TG----------CGATCATCAC-TTTTTT-----------GTAT--TGATTT-GAAAC-ATACAA-CCCGC-GT----CAGCTAATTT--CAC-AAAAT---CAGTATCTTTTATAG----C--CT---T---G-CACTTTGATGCACGCACGACAGCGACTTCTCATTGAATGGATAATATTTGAAATCCTGGCTTG--------------A--CTCTTGAACAAG---CGT-----TTG-GCGAAGTGT----TTGGACGTT----GAT-----TT--A---------TACAATTTTATTGCGAGATTG-AAAGAACA----TAC--CATATAAACAAAT-TCTGAATAATTAAATACAGATAAACAAATG-CTAA-----ACGGAA--T-----ATAC----T-AG-CAATAAAATTGT-----------------TGCG---T--TT-A---T-----GTGAATTTAAGTT----AAGGGGGTTGTATGTTTCAAATCAAT-AAAAAGA-AGTG----AT--AATCGC--AATGGA-T-TTTGATGAAACTTACCA-GAACATATA-----GAAAGATGTG-A------TATTATCAAATACAAT-ATACTTTTAAATGA
gi|7 : ATCT--AT---AG----------CGATTACCAC-TTCTTT-----------TTAT--TGATTT-GAATT-ATACAA-GCCC--AT----TACCTAACTT--CAC-ACAGT---CAGTATCTTGTATAG----T--CT---TCTTG-CGCATTGATACACGCATGACAGCAACTCCTCGTTAATTGGTTGATATATGGAATCCGGGCGCGTGGTATTTTGTTCCA--CTCTTCAACAAG---CGG-----TTA-ACG--GT---------------------T-----TT--C---------AGTAAAATTATTGCTAAATTG-AAAGAAAAAC--TAT--CATGGAAAGAATA-TCTGAATATTAAAATACAGATAAATCAACT-CTAA-----ATGAAAT-T-----ATAC----A-AA-CAATAAAAGTGT-----------------TTCGT--T--TT-T---T-----GTGATTTTAGGTT----ATGGGGATTGAATGTTTCAAATCAAT-AAAAATA-AATG----AT--AATCAC--AACATATT-TTTAATGGGAAATTCCA-GTAAAGATA-----GAAA-ATGTA-A------TATTACTAAATCAAAT-A-AATATAAAAAAA
gi|8 : tttaatcgatatcttaaccttcattttatttaataatatcacgcTTTTTTTG-----TTT--GTTTT-TTTGATAATATAACA------TTG----ACATTTTCTGGAA---ATTT-TCATC-AAAATAT--AT---TG----------CTATACTCACTTTTTTT-----------TTAT--TAATTT-GAAAC-atc
gi|8 : acctccttacgtaggtgcatgcatgtaacatcctggtatcccgttacgtaggtacatgtcggtaacatcctggtatcccgttacgtaggtacatgtcggtaatatcctggtatttccttacataggtgtcgtatgtctttataagtagctgccttcaaagacctgttcaatcctcacatacaccgaacgactttaaaaacgatattctcagagaaacagcaataaaactttaagatctttatcgttttgttgttATTTATTTAA-A-ATGT--ATTTTATTGGATAATATATCA------TCTCTCTATCATTCCTGGAA---ATTT-TCATC-AGAATCT--AT---TG----------TGATTATCAC-CTCTTT-----------TTAT--TAATTT-TAAAC-ATACGA-CCCCC-G-----TGCATCAATG--CGC-AAcaccttgcgcattgatgcacgggggtcgtatgtttaaaattaataaaaagaggtgataatcacaatagattctgatgaaaatttccaggaatgatagagagatgatatattatccaataaaatacattttaaataaat
gi|9 : acctccttacgtaggtgcatgcatgtaacatcctggtatcccgttacgtaggtacatgtcggtaacatcctggtatcccgttacgtaggtacatgtcggtaatatcctggtatttccttacataggtgtcgtatgtctttataagtagctgccttcaaagacctgttcaatcctcacatacaccgaacgactttaaaaacgatattctcagagaaacagcaataaaactttaagatctttatcgttttgttgtttttttttgtttgtttttttgataatataacattgacattttctggaaattttcatcaaaatatattgctatactcactttttttttattaatttgaaaccaccTTTTTTTG-----TTT--GTTTT-TTTGATAATATAACA------TTG----ACATTTTCTGGAA---ATTT-TCATC-AAAATAT--AT---TG----------CTATACTCACTTTTTTT-----------TTAT--TAATTT-GAAAC-
gi|9 : acctccttacgtaggtgcatgcatgtaacatcctggtatcccgttacgtaggtacatgtcggtaacatcctggtatcccgttacgtaggtacatgtcggtaatatcctggtatttccttacataggtgtcgtatgtctttataagtagctgccttcaaagacctgttcaatcctcacatacaccgaacgactttaaaaacgatattctcagagaaacagcaataaaactttaagatctttatcgttttgttgttATTTATTTAA-A-ATGT--ATTTTATTGGATAATATATCA------TCTCTCTATCATTCCTGGAA---ATTT-TCATC-AGAATCT--AT---TG----------TGATTATCAC-CTCTTT-----------TTAT--TAATTT-TAAAC-ATACGA-CCCCC-G-----TGCATCAATG--CGC-AAcaccttgcgcattgatgcacgggggtcgtatgtttaaaattaataaaaagaggtgataatcacaatagattctgatgaaaatttccaggaatgatagagagatgatatattatccaataaaatacattttaaataaat
8 sequences could not be aligned to this reference sequence:
Unaligned ( gi|27 ): CCCAATCTGATGACCATACACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTTT
Unaligned ( gi|28 ): ATTAGGTGTTTATATAGAATATTAGCCAAATTAAACTAAAAGATAGCCATCCTTAAAAGAATATC
Unaligned ( gi|29 ): AAAGAACTTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTGTATGT
Unaligned ( gi|31 ): ATACACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
Unaligned ( gi|32 ): AAGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGT
Unaligned ( gi|33 ): TGAAAGACTAGAAACATTACCCTCAGATAAACACAATAAAACATCAAGTTCTTTATTG
Unaligned ( gi|34 ): ACACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
Unaligned ( gi|36 ): AAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
Alignments
lowQualScore : 11111111111 222222222222 111 111111 1111111 1111 33333333 22222222222222222 111 11111
lowQualScore : 2 2 2 22 555555 555555 0 1 1 22 666 7777777777 3 33333333333 1 22 1 3 1 2 4444 22 2 444 666666666666 444 2 1 55 000 99999 3 000000 7777 0 3 6 0000000 2 8888 55 44 44 88888 1 22222222 6666666 2 00000000000000000 555 33 2 444 44444 5555 2 4444 33 9999999999 33 2 2 5 2 0 66666 2 777777 0 222 1
lowQualScore : . . . .. ...... ...... . . . .. ... .......... . ........... . .. . . . . .... .. . ... ............ ... . . .. ... ..... . ...... .... . . . ....... . .... .. .. .. ..... . ........ ....... . ................. ... .. . ... ..... .... . .... .. .......... .. . . . . . ..... . ...... . ... .
lowQualScore : 1 1 1 88 222222 555555 4 9 8 44 111 6666666666 5 33333333333 7 33 8 5 9 0 2222 99 1 444 555555555555 777 7 0 00 000 11111 6 111111 1111 5 3 7 9999999 5 8888 00 66 77 33333 2 00000000 4444444 9 00000000000000000 000 99 5 444 77777 3333 2 7777 11 7777777777 22 4 4 9 5 4 22222 5 222222 2 999 0
consensus : TCGATTTTT-TTGA-A-ATTT--ATTTTATTTGATAATATAACA------TCTTTCTACCTTTCCTGGAA------ATTT-TCATC-AAAATCT--AT---TG----------CGATTATCAC-TTCTTT-----------TT-AT--TGATTT-GAAAC-ATACAA-CCCCC-GT----TACCTAAATT--CAC-AAAAT---CAGTATCTTGTATAG----C--CT---T---G-CGCATTGATGCACGCACGACAGCGACTTCTCATTGAATGGATAATATTTGAAATCCGGGCTTGTGGTATGTTGTTCCA--CTCTTGAACAAG---CGC-----TTG-ACGAAGTAC----TTGAACGTT----GATTTCAATAATTTTATTGCGAA-ATTG-AA------AGAACA----TAC--CATAGAAACAAA-ATCTGAATATCAAAATACAGATAAACCAAT-TCTAA-----ACGAAA--T-----ATAC----A-AA-CAATAAAAGTGT-----------------TGCG---T--TT-T---T-----GTGAATTTAGGTA----ACGGGGGTTGTATGTTTCAAATCAATAAAAAGA-AGTG----AT--A----------ATCGC--AATAGA-T-TTTGATGAAAATTTCCA-GGAAAGATA-----GAAAGATGTT-A------TATTATCAAATAAAAT-A-AATTTNAAACGA
Reference ( family-3390 ) : TCGATTTTT-TTGA-A-ATTT--ATTTTATTTGATAATATAACA------TCTTTCTACCTTTCCTGGAA------ATTT-TCATC-AAAATCT--AT---TG----------CGATTATCAC-TTCTTT-----------TT-AT--TGATTT-GAAAC-ATACAA-CCCCC-GT----TACCTAAATT--CAC-AAAAT---CAGTATCTTGTATAG----C--CT---T---G-CGCATTGATGCACGCACGACAGCGACTTCTCATTGAATGGATAATATTTGAAATCCGGGCTTGTGGTATGTTGTTCCA--CTCTTGAACAAG---CGC-----TTG-ACGAAGTAC----TTGAACGTT----GATTTCAATAATTTTATTGCGAA-ATTG-AA------AGAACA----TAC--CATAGAAACAAA-NTCTGAATATCAAAATACAGATAAACCAAT-TCTAA-----ACGAAA--T-----ATAC----A-AA-CAATAAAAGTGT-----------------TGCG---T--TT-T---T-----GTGAATTTAGGTA----ACGGGGGTTGTATGTTTCAAATCAATAAAAAGA-AGTG----AT--A----------ATCGC--AATAGA-T-TTTGATGAAANTTTCCA-GGAAAGATA-----GAAAGATGTT-A------TATTATCAAATAAAAT-A-AATTTNAAACGA
gi|1 : TTGATGTTT-TTGA-A-ATTT--ATTTTATTTGATGATAAAGCA------TCTTTCTTCCTTTCCTGGAA------ATTT-TCTTCCAAAATTT--AT---TG----------CGATTTTCAT-TTCTTT-----------TT-AT--TGATTTTGAAAC-ATAAAATCCCNN-NN----NNNNNNNNNN--NNN-NNNNN---NNNNNNNNNNNNNNN----N--NN---N---N-NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTCTTGAATAAGG--TGCCCATTTTT-ACGA---------TT---CAGT----GATTTCAATAATTTTATTGCAAA-ATTATAC------AAAACT----AAC--CATAGAAACAAA-ATCTGAATATCAAAATACAGATAAACCAAT-ACTTA-----ACAAAA--TT----ATAC----A-AA-CAATAGAAGTGT-----------------TGCA---T--TT-T---TTT---GTGAACTAAGTTA----ATGGGGGTTGTAAGTTTTAAATCAACAGAAAGA-AGTG----AT--A----------ATCAC--AATAGA-T-TTTAATGAAAGTTTCCA-GGAAAGATA------AAAGATTCT-A------TTTTATTGAAT-AAAT-A-AATTT
gi|10 : tnnnnnnnnnnaaacattaccctcagataaacacaataaaacatcaagttctttaAATTTAACG------TTTTCCT---TTTCCTAGAAGAAAAAAT----CATA-AAAATCT--AC---TG----------CAAATATCGC-TTCTTT-----------G--AT--TACTTA-GAAAC-ATACAA-ACCCCAGT----TACCTAAATT--CAC-AAAAT---CAGTATCTTGTATAAACCTC--CT---T---G-CGCATTGATGTGCGCACGACGGCGA----------------TATTTTTTACAATCCGACCTTGTGGTATGTTGTTCCG--CTTTTGACTAAG---CGC-----TTG-CCAAAGTACGTACTTGAACGTT----AATTTCAAAAACTGTATTGTAAA------------------------TAT--CATAGAAACAAA-ATCAGAATATCAAAATGCAGATAAACCAAT-TC-AA-----ACGAAAT-T-----ATAC----A-AA-CAAT--AAGTGTTTTTTATGATTTTTTTGTGTG---T--TT-T---TATTTCGTTTATTTAAATT----ACGGAGATTGTGTGTTTCAAAT-----AAAAAA-AGTG----AT--T----------AACGC--TATAGA-TATTTAATGATA-TTTCAA-ATAAATTTA-----AAAAGATGTC-A------TATAATCAAAT-AAAT-A-GATTTAAAc
gi|11 : TCGATTTAT-ATGA-A-ATTG--ATGGTATTTGATAATATTTAA------TCTTTCTACCTTTC-------------------ATC-AAAATCT--AT---TG----------AAATTATCAC-TTCTTT-----------GT-AT--TGATTT-TAAAC-ATACAA-CCTCC-AT----TATCTAAATT--AAC-AAAAT---CAGTACCTTATACAG----C--CT---T---G-TGCATTGATGCATGCATGACAGCAACTTCTCAGTGAATAGATACTATTTGAAATTCGGGCTTGTGGTATTTCGTTCCA--CTCTTGAACAAG---TGC-----TTG-GCAAAGTAC----TTGAACACT----AATTTCAATAATTTTAATGCAA
gi|12 : actaagaaataagcacagagaatcaattagtcatttttttggtattcaaatctaatgaagaaatacacctgaccaaaaaacttttaaaaacgtaacactccgacaaacagcaattaaacatctttaTCTTT-----------TT-ATCTTTCCTT-GAAATTGT-CA---CCTT-GT----TGTC-AAATTGTCAC-AAAAT---CATTATCTTGTATAG----CATCC---T---GACAAATTGATGCACACACAACATTTACTTCTCATTGAATGGTTAATATTTGAAATCCAGACTTGTGGTATGTTGTTGCA--CTCTTTAACTATATCCAC-----TTTCACG--GT------TTGG----T----GATTTCATTAATTTTATTACAAA-ATTG-AA------AGAAAA----TAC--CAAAGAAACAAT-ATCTGAATATCAAAACACAGATAAACAAAT-TCTAA-----ACGAAA--TTGATAATAC----A-AA-CAATAAAAGTGT-----------------TGCA---T--TT-T---T-----GTGAATTTAGGTA----ATGGGGGTTGTATGTTTCAAAATAATAAAAAGA-AGTG----AT--A----------ATCGC--AACAGA-T-GTTGATGAAAATTTCCA-GGAAATGTAAAAACGAAAGATTTT-A------TACTATCAAATAAAAT-A-AATCTAAAAgtgtatttaagaatcagagtctcatttcccacaaataaaagcttcgcaatattta
gi|13 : aaatttatatatgtatttaTTGATTGTT-CTGA-A-ATTT--ATTTTATTTGAAAAAAAAACA------TCTTTCTACTTCTCCTGGAA------ATTT-TCATC-AAAATCTGTAT---AG----------CGATTATTAC---ATTT-----------TT-AT--TGATTT-GAAAC-ACACAA-CCCCC-GT----TACCTAAATT--CAC-AAAAAAAACAGTATTATGTATAG----C--CTCTTT---G-TGCATTGATGCATGCACGACAGCGACTTCACATTGAATAAATAATATCTGAAATCCGGGCTTGTGGTATGTCGTTCCA--CTCTTTAATTAG---CGT-----TTG-ACGAAATAT----TTGAACGTC----GATTTCAATAATTTTATTGCGAA-ATTGTAC------AAAACA----
gi|13 : taCGAAA--TT----GTAC----A-AAACAATAAAAGTGT-----------------TGCG---T--TT-TTTTT-----GTGAATTTAGGTA----ACGGGGGTTATTTG-----AAT-AGTAGATAGATATTGTTTTATGAA----------AT-GA--AATAAA-T-TTTAAataaaagtgttgcgttttttttgtgaatttaggtaacgggggttatttgaatagtagatagatattgttttatgaaatgaaataaattttaaaaaca
gi|14 : tattgattgttctgaaatttattttatttgaaaaaaaaacatctttctacttctcctggaaattttcatcaaaatctgtatagcgattattacatttttattgatttgaaacacacaacccccgttacctaaattcacaaaaaaaacagtattatgtatagcctctttgtgcattgatgcatgcacgacagcgacttcacattgaataaataatatctgaaatccgggcttgtggtatgtcgttccactctttaattagcgtttgacgaaatatttgaacgtcgatttcaataattttattgCGATTCTT-TT---A-ATTTTCCTTTTATTTGATGATATAACA------T------A--TTCCCTGGAA------ATTT-TCATC-CAAATCT--AT---TG----------CAGTTTTGAC-TTCTTT-----------TT-GT--TGATTT-AAACT-ATACAA-ATCAC-GT----TACCTAAATT--CAC-AAAAT---CAGTATCTTGTATAGCCA-C--CT---T---G-CGAGTTGATGCACGaaaca
gi|14 : ATTTTT-TTAA-A-CTTT--CTTTTATTTGATAATATAACA------TCCTTTTACTTTTCGTGCAA------ATTT-TCATC-AATATCT--TT---TA----------CGATTAACGC-TTCTTT-----------TT-AT--TGA-TT-GAAAC-ATACAG-CCATC-G-----TGCATCAACT--CGC-AAatggctgtatgtttcaatcaataaaaagaagcgttaatcgtaaaagatattgatgaaaatttgcacgaaaagtaaaaggatgttatattatcaaataaaagaaagtttaaaaaaatattgataaagaactcaatgtcttatttatcgccgttt
gi|15 : cgattcttttaattttccttttatttgatgatataacatattccctggaaattttcatccaaatctattgcagttttgacttctttttgttgatttaaactatacaaatcacgttacctaaattcacaaaatcagtatcttgtatagccaccTCAATATTC-TTAA-A-ATTA--ACTTTATTTGATAATATAACA------TCTTTCTACCTTTCCTGCAA------AATG-TCATC-AAACTCT--AT---TC----------TGACTATCAC-TTCTTT-----------TT-GT--AGATTT-GAAAC-ATACAG-CCCAT-GT----CACCT-TATT--CAC-AAAAT---CACTATCTTGTATAGTCT-C--CT---T---G-CTCACTGATGCCCACACAACAACAAattgataaagaactcaatgtcttatttatcgccgttt
gi|15 : AC----ACAA-CAACAAA---GT-----------------TACA---A---------------GTGAATTTAGGTATCAAACGGGGGTTGTATGATTCAAATCAATAAAAATA-GATG----AT--A----------agttacaagtgaatttaggtatcaaacgggggttgtatgattcaaatcaataaaaatagatgatactgaacagtctactgaagagcaaactttc
gi|15 : tcaatattcttaaaattaactttatttgataatataacatctttctacctttcctgcaaaatgtcatcaaactctattctgactatcacttctttttgtagatttgaaacatacagcccatgtcaccttattcacaaaatcactatcttgtatagtctccttgctcactgatgcccTATCAT-CTATTT-----------TT-AT--TGATTT-GAATC-ATACAA-CCCCC-GTTTGATACCTAAATT--CAC-ctgaacagtctactgaagagcaaactttc
gi|16 : tcaatattcttaaaattaactttatttgataatataacatctttctacctttcctgcaaaatgtcatcaaactctattctgactatcacttctttttgtagatttgaaacatacagcccatgtcaccttattcacaaaatcactatcttgtatagtctccttgctcactgatgcccacacaacaacaaagttacaaATTTTATTGCAAA-ATTG-AA------AGAAAA----AAAAACATAAAAACAAA-ATTTGAATATCAAAATACATATAAACCCAT-TCTAA-----ACAAAAG-T-----ATAA----A-AA-CAAAAATAGTGT-----------------TACG---T--TT-T---T-----GT-AATTTAGGTA----GCGAGAGTTGTATGTTTCAAATCAATAAAAAGA-TGTA----AT--A----------ATTGC--AATAGT-A-TTTAATGAAA-TTTCCATAGAAAGAAA-----GATAGATGTT-A------TAGTATCAAGTGAAAT-A-AATTTCAAActgaacagtctactgaagagcaaactttc
gi|17 : actGTTTTATGAATCAAATCAATAAAAAGA-AGTG----AT--AATCGTCATAGATCGC--AATTGA-T-TTTGAAGAAAATTTACA-GACATGGTT-----AAAAGATGTT-A------CTTTATGAAATACAAT-A-atatt
gi|17 : catttttaaaaaataaaTCGATTTTTATT------TTT--AATTTATTTGATAATAAAAAA------ATTTTCTATAGTTTTTGTAA------AGTT-TCATC-AATATC------------------------TATCAC-TTCTTT-----------TTAAT--TTTTTT-GAAAC-ATACAA-CCCCC-GT----TACCattggtaacgggggttgtatgtttcaaaaaaattaaaaagaagtgatagatattgatgaaactttacaaaaactatagaaaatttttttattatcaaataaattaaaaataaaaatcga
gi|18 : catttttaaaaaataaatattgtatttcataaagtaacatcttttaaccatgtctgtaaattttcttcaaaatcaattgcgatctatgacgattatcacttctttttattgatttgattcataaaacatt----GATTTCAATAATTCTATTGCAAA-AACG-AA------ATAAAA----TAC--CATAG-AACAGACATCTTAATATCAAAGTACAGATAAACCAATAACTAA-----AC-AGA--T-----TTAT-----------AT---AGTGT-------------------CG---T--TT-G---G-----GGGATTTTAAGTA----ACGGGGGATGTATTGTTCAAATCAATAAAAAGA-ATTG----AT--A----------ACCGCATAATAA----TTTGATAAATATTTC------AAG--A-----AAAAG--GTTAA------CATTATGAAATAAAAT-A-AATTTTGA
gi|19 : CGATTTTT-TTAACA-AAAT--ATTT-ATTTCATAAAATAACA------TCTTTCAACCATTTCTGTTA------ATTTGTTATC-AAAATCT--AT---TG----------CAATTATCAC-TTCTTT-----------TC-AT--TTATTT-CAAAC-AAACAA-CCCCC-GT----TACCTAAATT--CACAAAAAT---CAGTATTTTGTATAGCTA-C--CT---T---G-CGCATTGATGCACGCGCGACAGCGtaagtcaataaag
gi|19 : AAC-GTACAA-CCCCA-AT----TACCTAAATT--CAC-Agatgtatatgtgaatttaggtaattggggttgtacgttgcttttcttaaat
gi|2 : cgatttttttaacaaaatatttatttcataaaataacatctttcaaccatttctgttaatttgttatcaaaatctattgcaattatcacttcttttcatttatttcaaacaaacaacccccgttacctaaattcacaaaaatcagtattttgtatagctaccttgcgcattgatgcacgcgcgacagcggatgtataGATTTAT-TTGA-A-ATTC--GTTTTATTTGGTAATATAACA------TCTTTCTACCTTTCATGAAA------ATTT-TCATC-GAAATCT--ATAATTG----------TGATTATCTC-GTCTTT-----------TT-AT--TGTGTT-GAAAC-ATACTA-CCCCC-TT----TACCTAAATT--CAC-AAAAC---CAATAGCTTGTATAG----C--CTCCTT---A-CGCATTGATGCACGCACGACAGCGACTTATCATTGAATGGATAATATTTGAAATCAGGCTTTGCGGTATGTTGTTCTA--CAAGTGAACAGG---CGC-----TTG-ACGAAGGAC----TTGAACGTT----GATTTCACTAATTGTATTTGGAA-ATTG-AT------AGAACATAGTTAC--CATAGAAACAAA-TTCTGAATATTTAAATACAGATAGGTCAAT-GCTAA-----ACAAAA--------GTA-----A-AA-TTCTAAAAGTGT-----------------TGCGTTTT--TT-T---T-----GTGAATTTAGGAA----ACGGGGGTTGTATGTTTCAAATCAATAAACAGA-AATG----AT--A----------GTCGC--AATAGA-T-CTTGATGAACAATTCCA-GGGAAGAAA-----GAAA-----C-A------TATTTTTAAA-AAAAT---GGTATGAAACGgcttttcttaaat
gi|20 : CGATTTTT-TTTA-ACATTT--ACTTTATTTGAAAATATAACA------TCTTTCTACTTTTCCTGGAA------AGTT-TCCAC-ACAATCT--AT---TG----------CCAGCATCAC--GATTT-----------TT-AT--TGATTT-GAAAC-ATACAA-CCACT-GT----TACCTAAATT--CAT-AAAAT---CAGTAACTTGTATAGCAT-C--CT---T---G-TGCATTGGTGCACCCACGACAGCGAATTCTCATcgatgatttattgctgtttatctgcttttctaaagtatgtcggtg
gi|21 : ATAAACCAAT-TCTAAGTTTTACAAAAAAT-----ATACTTGTG-AA-CAATAAAAGTGT-----------------TGCGATTT--TT-T---T-----GTCAGTTTAGATA----ATGGGGGTTGTATATTTCAATTCGATAAAAACA--GTG----TT--C----------ATTGC--AATAGA-T-TTTGATGAAACTTTCCA-GATATAGTA-----GAATGATATT-A------TATTATCAAATAAAAT-A-AATTTTAAA
gi|22 : TCGATAATT-TTGG-A-ATTT--ATTTTATTTGAAAATATAACA------TCTGTCTAACTTTCCTGGAA------AATT-TCATC-AAAATCT--GT---TG----------CGATTATCAC-CTCTTT-----------TT-AT--TGaa
gi|23 : TTGATTTTT-TTGA-A-ATTT--ATTTTATTTGATTATATAACAGTTACATCTTTCTACTATTCCTGGAA------ATTT-TCATT-AAAATCT--AG---TG----------TGATTATCGC-TTCTTT-----------TT-AT--TGATT----AACTATATAA-TCtacagtccgtaatgtttctatgctgtttatctgagttatatgtttctaaagtagta
gi|24 : aT--ATTGTATTTTATTAAGTAACA------TCTTTTAACCATGTCTGTAA------ATTT-GCTTC-AAAATCA--AT---TGCGATCTATGACGATTATCAC-TTCTTTCGGTGAA----TC-AT--TGAT
gi|25 : taaaaaaaaTTGTATGTTTCAATTCAATAAAAAGA-AGCA----AT--A----------TTCAC--AATAAA-A-TTTGATAAAACTTCTCA-GAAAAAATA-----GAAAGATATT-T------TATAATAAAATAAAAT-A-AACTTCAAAgtaa
gi|26 : tATC-CAAATCT--AT---TG----------CGATTATCGC-TTCTTT-----------TA-AT--TGGTTT-GAAAC-ATACAG-TCCTA-GT----GACCTAAATT--CAT-AAAAT---CAGTATATTGTATattatt
gi|3 : GATTTAT-TTGA-A-ATTC--GTTTTATTTGGTAATATAACA------TCTTTCTACCTTTCATGAAA------ATTT-TCATC-GAAATCT--ATAATTG----------TGATTATCTC-GTCTTT-----------TT-AT--TGTGTT-GAAAC-ATACTA-CCCCC-TT----TACCTAAATT--CAC-AAAAC---CAATAGCTTGTATAG----C--CTCCTT---A-CGCATTGATGCACGCACGACAGCGACTTATCATTGAATGGATAATATTTGAAATCAGGCTTTGCGGTATGTTGTTCTA--CAAGTGAACAGG---CGC-----TTG-ACGAAGGAC----TTGAACGTT----GATTTCACTAATTGTATTTGGAA-ATTG-AT------AGAACATAGTTAC--CATAGAAACAAA-TTCTGAATATTTAAATACAGATAGGTCAAT-GCTAA-----ACAAAA--------GTA-----A-AA-TTCTAAAAGTGT-----------------TGCGTTTT--TT-T---T-----GTGAATTTAGGAA----ACGGGGGTTGTATGTTTCAAATCAATAAACAGA-AATG----AT--A----------GTCGC--AATAGA-T-CTTGATGAACAATTCCA-GGGAAGAAA-----GAAA-----C-A------TATTTTTAAA-AAAAT---GGTATGAAACGtgagatacacgg
gi|30 : TGATGATATAATA------TCTTTCTACCTTTCCTGGAT------ATTC-TTATC-AGATTAT--AT---TG----------TGATTAcgatgatttattgctgtttatctgcttttctaaagtatgtcggt
gi|35 : TCGATTTCT-TTGA-A-ATTT--ATTTTATTTGATAATATTACA------TCTGTCTACCTT
gi|4 : ta-TTGA-A-ATTT--ATTTTATTTGAGAATATAGCA------TCTTCCTACCTTTCCGGGAA------AGTT-TCATC-AAAATTG--GT---TG----------CGATTATTAT-TTCTTTATTACTACTTTTT-AT--TGATTT-GAAAC-A------------------------------CAC-AAAAT---CATTATCTT--ATAG----C--CTCCTT---G-TGCATCGATGCACGCACGGTAGCGACTTCTCATTGAATCAACACTATTTGAAATCCGGGCTTGTTTTAAGTTGTTCCG--CTCTTTAACAAG---CGT-----TTG-ACGAAATAT----TTGAACGTT----GATTTCAATAATTTTCCTGCGAA-ATTG-AA------ATAACA----TAC--CACTGAATCAAA-ATCTGAATATCAAAATACAGATAAACCAAT-TCTAA-----ACAAAAT-T-----ATAC----A-AA-CAATAACAGTGT-----------------TGCA---T--TTAT---TG----GTGAATTTATGTT----ACGAGTGCTGTATGTTTCAAATCAATAAAAAGT-AGTA----AT--C----------ATTGC--AATAGG-T-TTTGACGAAACTTTTCA-GAGATGGTA-----GAAAGATATT-A------TATTATCAAAGAAAATGA-AATTTAAAAC
gi|5 : TTTTT-TTAA-A-ATTC--ATTTTATTTGATTAAATATCA------TCTTTCTATCATTCCTGGAT------AGTT-TCACC-AAAATCT--AA---TG----------CGATTATCAC-TTCTTG-----------TT-AT--TGGTTT-GAAAC-ATACAA-CCCTT-GT----GACCTAG--T--CAT-AAAAT---CAGTATCTTGAATAG----C--CTCCTT---G-TGCACTGATGCATGCATGACAGCAACTTCTCACTGAATGGATATTATTTGAAATCTGGGCGTGTGGTATGTTATTCCA--TTCTTGAACAAG---CAC-----TTA-ACAAAGTAC----TTGAACGTTCCCAGGTGGCAGTTGGCGTA-TGTAAACAT---AATTTTTCAGAAAA----TAC--CATAGAAACAAA-TTCTGAATATCAAACTACGGATAAACCAAT-TCTTA-----ACGAAAT-T-----ATAC----A-AA-CAATAAAAGTGT-----------------TACA---TTGTT-T---T-----GTGAATTTAGGTA----AAGTGGGTTTTATGTTTCAAATCAATAAAAAGA-TGTG----AT--A----------ATCGC--AATATA-T-TTTGATGAAACTTTCCA-GGAAAGGTA-----GGAAGATGTT-ATAATAGTATTATCAAAAAAAAatgataatgaactcaatcttttattgcagtttaccggatggttgcgtttcta
gi|6 : gattTCGATTTAT-TTGA-A-ATTT--ATTTTATTTAATAATATAACA------TTTTGTTACCTTTCCTGTAA------AATT-TCATC-AAAATCT--AT---TG----------CGATCATCAC-TTTTTT-----------GT-AT--TGATTT-GAAAC-ATACAA-CCCGC-GT----CAGCTAATTT--CAC-AAAAT---CAGTATCTTTTATAG----C--CT---T---G-CACTTTGATGCACGCACGACAGCGACTTCTCATTGAATGGATAATATTTGAAATCCTGGCTTG--------------A--CTCTTGAACAAG---CGT-----TTG-GCGAAGTGT----TTGGACGTT----GATTTATACAATTTTATTGCGAG-ATTG-AA------AGAACA----TAC--CATATAAACAAA-TTCTGAATAATTAAATACAGATAAACAAAT-GCTAA-----ACGGAA--T-----ATAC----T-AG-CAATAAAATTGT-----------------TGCG---T--TT-A---T-----GTGAATTTAAGTT----AAGGGGGTTGTATGTTTCAAATCAATAAAAAGA-AGTG----AT--A----------ATCGC--AATGGA-T-TTTGATGAAACTTACCA-GAACATATA-----GAAAGATGTG-A------TATTATCAAATACAAT-ATACTTTTAAATGA
gi|7 : ATCT--AT---AG----------CGATTACCAC-TTCTTT-----------TT-AT--TGATTT-GAATT-ATACAA-GCCC--AT----TACCTAACTT--CAC-ACAGT---CAGTATCTTGTATAG----T--CT---TCTTG-CGCATTGATACACGCATGACAGCAACTCCTCGTTAATTGGTTGATATATGGAATCCGGGCGCGTGGTATTTTGTTCCA--CTCTTCAACAAG---CGG-----TTA-ACG----------------GTT-------TTCAGTAAAATTATTGCTAA-ATTG-AA------AGAAAAAC--TAT--CATGGAAAGAAT-ATCTGAATATTAAAATACAGATAAATCAAC-TCTAA-----ATGAAA--TT----ATAC----A-AA-CAATAAAAGTGT-----------------TTCG---T--TT-T---TT----GTGATTTTAGGTT----ATGGGGATTGAATGTTTCAAATCAATAAAAATA-AATG----AT--A----------ATCAC--AACATATT-TTTAATGGGAAATTCCA-GTAAAGATA-----GAAA-ATGTA-A------TATTACTAAATCAAAT-A-AATATAAAA
gi|8 : tttaatcgatatcttaaccttcattttatttaataatatcacgcTTTTT-TTG-----TTT--GTTTT-TTTGATAATATAACA------TTG----ACATTTTCTGGAA------ATTT-TCATC-AAAATAT--AT---TG----------CTATACTCACTTTTTTT-----------TT-AT--TAATTT-GAAAC-aaaatc
gi|8 : acctccttacgtaggtgcatgcatgtaacatcctggtatcccgttacgtaggtacatgtcggtaacatcctggtatcccgttacgtaggtacatgtcggtaatatcctggtatttccttacataggtgtcgtatgtctttataagtagctgccttcaaagacctgttcaatcctcacatacaccgaacgactttaaaaacgatattctcagagaaacagcaataaaactttaagatctttatcgttttgttgtt-T---T-----GCGCATTGATGCA-----CGGGGGTCGTATGTTTAAAATTAATAAAAAGA-GGTG----AT--A----------ATCAC--AATAGA-T-TCTGATGAAAATTTCCA-GGAATGATA-----GAGAGATGAT-A------TATTATCCAATAAAAT-A-CATTTTAAAcaccttgcgcattgatgcacgggggtcgtatgtttaaaattaataaaaagaggtgataatcacaatagattctgatgaaaatttccaggaatgatagagagatgatatattatccaataaaatacattttaaataaat
gi|9 : acctccttacgtaggtgcatgcatgtaacatcctggtatcccgttacgtaggtacatgtcggtaacatcctggtatcccgttacgtaggtacatgtcggtaatatcctggtatttccttacataggtgtcgtatgtctttataagtagctgccttcaaagacctgttcaatcctcacatacaccgaacgactttaaaaacgatattctcagagaaacagcaataaaactttaagatctttatcgttttgttgtttttttttgtttgtttttttgataatataacattgacattttctggaaattttcatcaaaatatattgctatactcactttttttttattaatttgaaaccaccTTTTT-TTG-----TTT--GTTTT-TTTGATAATATAACA------TTG----ACATTTTCTGGAA------ATTT-TCATC-AAAATAT--AT---TG----------CTATACTCACTTTTTTT-----------TT-AT--TAATTT-GAAAC-taaat
gi|9 : acctccttacgtaggtgcatgcatgtaacatcctggtatcccgttacgtaggtacatgtcggtaacatcctggtatcccgttacgtaggtacatgtcggtaatatcctggtatttccttacataggtgtcgtatgtctttataagtagctgccttcaaagacctgttcaatcctcacatacaccgaacgactttaaaaacgatattctcagagaaacagcaataaaactttaagatctttatcgttttgttgtt-T---T-----GCGCATTGATGCA-----CGGGGGTCGTATGTTTAAAATTAATAAAAAGA-GGTG----AT--A----------ATCAC--AATAGA-T-TCTGATGAAAATTTCCA-GGAATGATA-----GAGAGATGAT-A------TATTATCCAATAAAAT-A-CATTTTAAAcaccttgcgcattgatgcacgggggtcgtatgtttaaaattaataaaaagaggtgataatcacaatagattctgatgaaaatttccaggaatgatagagagatgatatattatccaataaaatacattttaaataaat
8 sequences could not be aligned to this reference sequence:
Unaligned ( gi|27 ): CCCAATCTGATGACCATACACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTTT
Unaligned ( gi|28 ): ATTAGGTGTTTATATAGAATATTAGCCAAATTAAACTAAAAGATAGCCATCCTTAAAAGAATATC
Unaligned ( gi|29 ): AAAGAACTTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTGTATGT
Unaligned ( gi|31 ): ATACACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
Unaligned ( gi|32 ): AAGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGT
Unaligned ( gi|33 ): TGAAAGACTAGAAACATTACCCTCAGATAAACACAATAAAACATCAAGTTCTTTATTG
Unaligned ( gi|34 ): ACACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
Unaligned ( gi|36 ): AAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
Alignments
lowQualScore : 11111111111 222222222222 111 111111 1111111 1111 33333333 22222222222222222 111 11111 1111111111
lowQualScore : 2 2 2 22 555555 555555 0 1 1 22 666 7777777777 3 33333333333 1 22 1 3 1 2 4444 22 2 444 666666666666 444 2 1 55 000 99999 3 000000 7777 0 3 6 0000000 2 8888 55 44 44 88888 1 22222222 6666666 2 00000000000000000 555 33 2 444 44444 5555 2 4444 33 0000000000 33 2 2 2 0 66666 2 777777 0 222 1
lowQualScore : . . . .. ...... ...... . . . .. ... .......... . ........... . .. . . . . .... .. . ... ............ ... . . .. ... ..... . ...... .... . . . ....... . .... .. .. .. ..... . ........ ....... . ................. ... .. . ... ..... .... . .... .. .......... .. . . . . ..... . ...... . ... .
lowQualScore : 1 1 1 88 222222 555555 4 9 8 44 111 6666666666 5 33333333333 7 33 8 5 9 0 2222 99 1 444 555555555555 777 7 0 00 000 11111 6 111111 1111 5 3 7 9999999 5 8888 00 11 77 33333 2 00000000 4444444 9 00000000000000000 000 99 5 444 77777 3333 2 7777 11 3333333333 22 4 4 5 4 22222 5 222222 2 999 0
consensus : TCGATTTTT-TTGA-A-ATTT--ATTTTATTTGATAATATAACA------TCTTTCTACCTTTCCTGGAA------ATTT-TCATC-AAAATCT--AT---TG----------CGATTATCAC-TTCTTT-----------TT-AT--TGATTT-GAAAC-ATACAA-CCCCC-GT----TACCTAAATT--CAC-AAAAT---CAGTATCTTGTATAG----C--CT---T---G-CGCATTGATGCACGCACGACAGCGACTTCTCATTGAATGGATAATATTTGAAATCCGGGCTTGTGGTATGTTGTTCCA--CTCTTGAACAAG---CGC-----TTG-ACGAAGTAC----TTGAACGTT----GATTTCAATAATTTTATTGCGAA-ATTG-AA------AGAACA----TAC--CATAGAAACAAA-ATCTGAATATCAAAATACAGATAAACCAAT-TCTAA-----ACGAAA--T-----ATAC----A-AA-CAATAAAAGTGT-----------------TGCG---T--TT-T---T-----GTGAATTTAGGTA----ACGGGGGTTGTATGTTTCAAATCAATAAAAAGA-AGTG----AT--AATCG----------C--AATAGA-T-TTTGATGAAAATTTCCA-GGAAAGATA-----GAAAGATGTT-A------TATTATCAAATAAAAT-A-AATTTNAAACGA
Reference ( family-3390 ) : TCGATTTTT-TTGA-A-ATTT--ATTTTATTTGATAATATAACA------TCTTTCTACCTTTCCTGGAA------ATTT-TCATC-AAAATCT--AT---TG----------CGATTATCAC-TTCTTT-----------TT-AT--TGATTT-GAAAC-ATACAA-CCCCC-GT----TACCTAAATT--CAC-AAAAT---CAGTATCTTGTATAG----C--CT---T---G-CGCATTGATGCACGCACGACAGCGACTTCTCATTGAATGGATAATATTTGAAATCCGGGCTTGTGGTATGTTGTTCCA--CTCTTGAACAAG---CGC-----TTG-ACGAAGTAC----TTGAACGTT----GATTTCAATAATTTTATTGCGAA-ATTG-AA------AGAACA----TAC--CATAGAAACAAA-ATCTGAATATCAAAATACAGATAAACCAAT-TCTAA-----ACGAAA--T-----ATAC----A-AA-CAATAAAAGTGT-----------------TGCG---T--TT-T---T-----GTGAATTTAGGTA----ACGGGGGTTGTATGTTTCAAATCAATAAAAAGA-AGTG----AT--AATCG----------C--AATAGA-T-TTTGATGAAAATTTCCA-GGAAAGATA-----GAAAGATGTT-A------TATTATCAAATAAAAT-A-AATTTNAAACGA
gi|1 : TTGATGTTT-TTGA-A-ATTT--ATTTTATTTGATGATAAAGCA------TCTTTCTTCCTTTCCTGGAA------ATTT-TCTTCCAAAATTT--AT---TG----------CGATTTTCAT-TTCTTT-----------TT-AT--TGATTTTGAAAC-ATAAAATCCCNN-NN----NNNNNNNNNN--NNN-NNNNN---NNNNNNNNNNNNNNN----N--NN---N---N-NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTCTTGAATAAGG--TGCCCATTTTT-ACGA---------TT---CAGT----GATTTCAATAATTTTATTGCAAA-ATTATAC------AAAACT----AAC--CATAGAAACAAA-ATCTGAATATCAAAATACAGATAAACCAAT-ACTTA-----ACAAAA--TT----ATAC----A-AA-CAATAGAAGTGT-----------------TGCA---T--TT-T---TTT---GTGAACTAAGTTA----ATGGGGGTTGTAAGTTTTAAATCAACAGAAAGA-AGTG----AT--AATCA----------C--AATAGA-T-TTTAATGAAAGTTTCCA-GGAAAGATA------AAAGATTCT-A------TTTTATTGAAT-AAAT-A-AATTT
gi|10 : tnnnnnnnnnnaaacattaccctcagataaacacaataaaacatcaagttctttaAATTTAACG------TTTTCCT---TTTCCTAGAAGAAAAAAT----CATA-AAAATCT--AC---TG----------CAAATATCGC-TTCTTT-----------G--AT--TACTTA-GAAAC-ATACAA-ACCCCAGT----TACCTAAATT--CAC-AAAAT---CAGTATCTTGTATAAACCTC--CT---T---G-CGCATTGATGTGCGCACGACGGCGA----------------TATTTTTTACAATCCGACCTTGTGGTATGTTGTTCCG--CTTTTGACTAAG---CGC-----TTG-CCAAAGTACGTACTTGAACGTT----AATTTCAAAAACTGTATTGTAAA------------------------TAT--CATAGAAACAAA-ATCAGAATATCAAAATGCAGATAAACCAAT-TC-AA-----ACGAAAT-T-----ATAC----A-AA-CAAT--AAGTGTTTTTTATGATTTTTTTGTGTG---T--TT-T---TATTTCGTTTATTTAAATT----ACGGAGATTGTGTGTTTCAAAT-----AAAAAA-AGTG----AT--TAACG----------C--TATAGA-TATTTAATG-ATATTTCAA-ATAAATTTA-----AAAAGATGTC-A------TATAATCAAAT-AAAT-A-GATTTAAAc
gi|11 : TCGATTTAT-ATGA-A-ATTG--ATGGTATTTGATAATATTTAA------TCTTTCTACCTTTC-------------------ATC-AAAATCT--AT---TG----------AAATTATCAC-TTCTTT-----------GT-AT--TGATTT-TAAAC-ATACAA-CCTCC-AT----TATCTAAATT--AAC-AAAAT---CAGTACCTTATACAG----C--CT---T---G-TGCATTGATGCATGCATGACAGCAACTTCTCAGTGAATAGATACTATTTGAAATTCGGGCTTGTGGTATTTCGTTCCA--CTCTTGAACAAG---TGC-----TTG-GCAAAGTAC----TTGAACACT----AATTTCAATAATTTTAATGCAA
gi|12 : actaagaaataagcacagagaatcaattagtcatttttttggtattcaaatctaatgaagaaatacacctgaccaaaaaacttttaaaaacgtaacactccgacaaacagcaattaaacatctttaTCTTT-----------TT-ATCTTTCCTT-GAAATTGT-CA---CCTT-GT----TGTC-AAATTGTCAC-AAAAT---CATTATCTTGTATAG----CATCC---T---GACAAATTGATGCACACACAACATTTACTTCTCATTGAATGGTTAATATTTGAAATCCAGACTTGTGGTATGTTGTTGCA--CTCTTTAACTATATCCAC-----TTTCACG--GT------TTGG----T----GATTTCATTAATTTTATTACAAA-ATTG-AA------AGAAAA----TAC--CAAAGAAACAAT-ATCTGAATATCAAAACACAGATAAACAAAT-TCTAA-----ACGAAA--TTGATAATAC----A-AA-CAATAAAAGTGT-----------------TGCA---T--TT-T---T-----GTGAATTTAGGTA----ATGGGGGTTGTATGTTTCAAAATAATAAAAAGA-AGTG----AT--AATCG----------C--AACAGA-T-GTTGATGAAAATTTCCA-GGAAATGTAAAAACGAAAGATTTT-A------TACTATCAAATAAAAT-A-AATCTAAAAgtgtatttaagaatcagagtctcatttcccacaaataaaagcttcgcaatattta
gi|13 : aaatttatatatgtatttaTTGATTGTT-CTGA-A-ATTT--ATTTTATTTGAAAAAAAAACA------TCTTTCTACTTCTCCTGGAA------ATTT-TCATC-AAAATCTGTAT---AG----------CGATTATTAC---ATTT-----------TT-AT--TGATTT-GAAAC-ACACAA-CCCCC-GT----TACCTAAATT--CAC-AAAAAAAACAGTATTATGTATAG----C--CTCTTT---G-TGCATTGATGCATGCACGACAGCGACTTCACATTGAATAAATAATATCTGAAATCCGGGCTTGTGGTATGTCGTTCCA--CTCTTTAATTAG---CGT-----TTG-ACGAAATAT----TTGAACGTC----GATTTCAATAATTTTATTGCGAA-ATTGTAC------AAAACA----
gi|13 : taCGAAA--TT----GTAC----A-AAACAATAAAAGTGT-----------------TGCG---T--TT-TTTTT-----GTGAATTTAGGTA----ACGGGGGTTATTTG-----AAT-AGTAGATAGATATTGTTTTATGAAAT-G----------A--AATAAA-T-TTTAAataaaagtgttgcgttttttttgtgaatttaggtaacgggggttatttgaatagtagatagatattgttttatgaaatgaaataaattttaaaaaca
gi|14 : tattgattgttctgaaatttattttatttgaaaaaaaaacatctttctacttctcctggaaattttcatcaaaatctgtatagcgattattacatttttattgatttgaaacacacaacccccgttacctaaattcacaaaaaaaacagtattatgtatagcctctttgtgcattgatgcatgcacgacagcgacttcacattgaataaataatatctgaaatccgggcttgtggtatgtcgttccactctttaattagcgtttgacgaaatatttgaacgtcgatttcaataattttattgCGATTCTT-TT---A-ATTTTCCTTTTATTTGATGATATAACA------T------A--TTCCCTGGAA------ATTT-TCATC-CAAATCT--AT---TG----------CAGTTTTGAC-TTCTTT-----------TT-GT--TGATTT-AAACT-ATACAA-ATCAC-GT----TACCTAAATT--CAC-AAAAT---CAGTATCTTGTATAGCCA-C--CT---T---G-CGAGTTGATGCACGaaaca
gi|14 : ATTTTT-TTAA-A-CTTT--CTTTTATTTGATAATATAACA------TCCTTTTACTTTTCGTGCAA------ATTT-TCATC-AATATCT--TT---TA----------CGATTAACGC-TTCTTT-----------TT-AT--TGA-TT-GAAAC-ATACAG-CCATC-G-----TGCATCAACT--CGC-AAatggctgtatgtttcaatcaataaaaagaagcgttaatcgtaaaagatattgatgaaaatttgcacgaaaagtaaaaggatgttatattatcaaataaaagaaagtttaaaaaaatattgataaagaactcaatgtcttatttatcgccgttt
gi|15 : cgattcttttaattttccttttatttgatgatataacatattccctggaaattttcatccaaatctattgcagttttgacttctttttgttgatttaaactatacaaatcacgttacctaaattcacaaaatcagtatcttgtatagccaccTCAATATTC-TTAA-A-ATTA--ACTTTATTTGATAATATAACA------TCTTTCTACCTTTCCTGCAA------AATG-TCATC-AAACTCT--AT---TC----------TGACTATCAC-TTCTTT-----------TT-GT--AGATTT-GAAAC-ATACAG-CCCAT-GT----CACCT-TATT--CAC-AAAAT---CACTATCTTGTATAGTCT-C--CT---T---G-CTCACTGATGCCCACACAACAACAAattgataaagaactcaatgtcttatttatcgccgttt
gi|15 : AC----ACAA-CAACAAA---GT-----------------TACA---A---------------GTGAATTTAGGTATCAAACGGGGGTTGTATGATTCAAATCAATAAAAATA-GATG----AT--Aagttacaagtgaatttaggtatcaaacgggggttgtatgattcaaatcaataaaaatagatgatactgaacagtctactgaagagcaaactttc
gi|15 : tcaatattcttaaaattaactttatttgataatataacatctttctacctttcctgcaaaatgtcatcaaactctattctgactatcacttctttttgtagatttgaaacatacagcccatgtcaccttattcacaaaatcactatcttgtatagtctccttgctcactgatgcccTATCAT-CTATTT-----------TT-AT--TGATTT-GAATC-ATACAA-CCCCC-GTTTGATACCTAAATT--CAC-ctgaacagtctactgaagagcaaactttc
gi|16 : tcaatattcttaaaattaactttatttgataatataacatctttctacctttcctgcaaaatgtcatcaaactctattctgactatcacttctttttgtagatttgaaacatacagcccatgtcaccttattcacaaaatcactatcttgtatagtctccttgctcactgatgcccacacaacaacaaagttacaaATTTTATTGCAAA-ATTG-AA------AGAAAA----AAAAACATAAAAACAAA-ATTTGAATATCAAAATACATATAAACCCAT-TCTAA-----ACAAAAG-T-----ATAA----A-AA-CAAAAATAGTGT-----------------TACG---T--TT-T---T-----GT-AATTTAGGTA----GCGAGAGTTGTATGTTTCAAATCAATAAAAAGA-TGTA----AT--AATTG----------C--AATAGT-A-TTTAATG-AAATTTCCATAGAAAGAAA-----GATAGATGTT-A------TAGTATCAAGTGAAAT-A-AATTTCAAActgaacagtctactgaagagcaaactttc
gi|17 : actGTTTTATGAATCAAATCAATAAAAAGA-AGTG----AT--AATCGTCATAGATCGC--AATTGA-T-TTTGAAGAAAATTTACA-GACATGGTT-----AAAAGATGTT-A------CTTTATGAAATACAAT-A-atatt
gi|17 : catttttaaaaaataaaTCGATTTTTATT------TTT--AATTTATTTGATAATAAAAAA------ATTTTCTATAGTTTTTGTAA------AGTT-TCATC-AATATC------------------------TATCAC-TTCTTT-----------TTAAT--TTTTTT-GAAAC-ATACAA-CCCCC-GT----TACCattggtaacgggggttgtatgtttcaaaaaaattaaaaagaagtgatagatattgatgaaactttacaaaaactatagaaaatttttttattatcaaataaattaaaaataaaaatcga
gi|18 : catttttaaaaaataaatattgtatttcataaagtaacatcttttaaccatgtctgtaaattttcttcaaaatcaattgcgatctatgacgattatcacttctttttattgatttgattcataaaacatt----GATTTCAATAATTCTATTGCAAA-AACG-AA------ATAAAA----TAC--CATAG-AACAGACATCTTAATATCAAAGTACAGATAAACCAATAACTAA-----AC-AGA--T-----TTAT-----------AT---AGTGT-------------------CG---T--TT-G---G-----GGGATTTTAAGTA----ACGGGGGATGTATTGTTCAAATCAATAAAAAGA-ATTG----AT--AACCG----------CATAATAA----TTTGATAAATATTTC------AAG--A-----AAAAG--GTTAA------CATTATGAAATAAAAT-A-AATTTTGA
gi|19 : CGATTTTT-TTAACA-AAAT--ATTT-ATTTCATAAAATAACA------TCTTTCAACCATTTCTGTTA------ATTTGTTATC-AAAATCT--AT---TG----------CAATTATCAC-TTCTTT-----------TC-AT--TTATTT-CAAAC-AAACAA-CCCCC-GT----TACCTAAATT--CACAAAAAT---CAGTATTTTGTATAGCTA-C--CT---T---G-CGCATTGATGCACGCGCGACAGCGtaagtcaataaag
gi|19 : AAC-GTACAA-CCCCA-AT----TACCTAAATT--CAC-Agatgtatatgtgaatttaggtaattggggttgtacgttgcttttcttaaat
gi|2 : cgatttttttaacaaaatatttatttcataaaataacatctttcaaccatttctgttaatttgttatcaaaatctattgcaattatcacttcttttcatttatttcaaacaaacaacccccgttacctaaattcacaaaaatcagtattttgtatagctaccttgcgcattgatgcacgcgcgacagcggatgtataGATTTAT-TTGA-A-ATTC--GTTTTATTTGGTAATATAACA------TCTTTCTACCTTTCATGAAA------ATTT-TCATC-GAAATCT--ATAATTG----------TGATTATCTC-GTCTTT-----------TT-AT--TGTGTT-GAAAC-ATACTA-CCCCC-TT----TACCTAAATT--CAC-AAAAC---CAATAGCTTGTATAG----C--CTCCTT---A-CGCATTGATGCACGCACGACAGCGACTTATCATTGAATGGATAATATTTGAAATCAGGCTTTGCGGTATGTTGTTCTA--CAAGTGAACAGG---CGC-----TTG-ACGAAGGAC----TTGAACGTT----GATTTCACTAATTGTATTTGGAA-ATTG-AT------AGAACATAGTTAC--CATAGAAACAAA-TTCTGAATATTTAAATACAGATAGGTCAAT-GCTAA-----ACAAAA--------GTA-----A-AA-TTCTAAAAGTGT-----------------TGCGTTTT--TT-T---T-----GTGAATTTAGGAA----ACGGGGGTTGTATGTTTCAAATCAATAAACAGA-AATG----AT--AGTCG----------C--AATAGA-T-CTTGATGAACAATTCCA-GGGAAGAAA-----GAAA-----C-A------TATTTTTAAA-AAAAT---GGTATGAAACGgcttttcttaaat
gi|20 : CGATTTTT-TTTA-ACATTT--ACTTTATTTGAAAATATAACA------TCTTTCTACTTTTCCTGGAA------AGTT-TCCAC-ACAATCT--AT---TG----------CCAGCATCAC--GATTT-----------TT-AT--TGATTT-GAAAC-ATACAA-CCACT-GT----TACCTAAATT--CAT-AAAAT---CAGTAACTTGTATAGCAT-C--CT---T---G-TGCATTGGTGCACCCACGACAGCGAATTCTCATcgatgatttattgctgtttatctgcttttctaaagtatgtcggtg
gi|21 : ATAAACCAAT-TCTAAGTTTTACAAAAAAT-----ATACTTGTG-AA-CAATAAAAGTGT-----------------TGCGATTT--TT-T---T-----GTCAGTTTAGATA----ATGGGGGTTGTATATTTCAATTCGATAAAAACA--GTG----TT--CATTG----------C--AATAGA-T-TTTGATGAAACTTTCCA-GATATAGTA-----GAATGATATT-A------TATTATCAAATAAAAT-A-AATTTTAAA
gi|22 : TCGATAATT-TTGG-A-ATTT--ATTTTATTTGAAAATATAACA------TCTGTCTAACTTTCCTGGAA------AATT-TCATC-AAAATCT--GT---TG----------CGATTATCAC-CTCTTT-----------TT-AT--TGaa
gi|23 : TTGATTTTT-TTGA-A-ATTT--ATTTTATTTGATTATATAACAGTTACATCTTTCTACTATTCCTGGAA------ATTT-TCATT-AAAATCT--AG---TG----------TGATTATCGC-TTCTTT-----------TT-AT--TGATT----AACTATATAA-TCtacagtccgtaatgtttctatgctgtttatctgagttatatgtttctaaagtagta
gi|24 : aT--ATTGTATTTTATTAAGTAACA------TCTTTTAACCATGTCTGTAA------ATTT-GCTTC-AAAATCA--AT---TGCGATCTATGACGATTATCAC-TTCTTTCGGTGAA----TC-AT--TGAT
gi|25 : taaaaaaaaTTGTATGTTTCAATTCAATAAAAAGA-AGCA----AT--ATTCA----------C--AATAAA-A-TTTGATAAAACTTCTCA-GAAAAAATA-----GAAAGATATT-T------TATAATAAAATAAAAT-A-AACTTCAAAgtaa
gi|26 : tATC-CAAATCT--AT---TG----------CGATTATCGC-TTCTTT-----------TA-AT--TGGTTT-GAAAC-ATACAG-TCCTA-GT----GACCTAAATT--CAT-AAAAT---CAGTATATTGTATattatt
gi|3 : GATTTAT-TTGA-A-ATTC--GTTTTATTTGGTAATATAACA------TCTTTCTACCTTTCATGAAA------ATTT-TCATC-GAAATCT--ATAATTG----------TGATTATCTC-GTCTTT-----------TT-AT--TGTGTT-GAAAC-ATACTA-CCCCC-TT----TACCTAAATT--CAC-AAAAC---CAATAGCTTGTATAG----C--CTCCTT---A-CGCATTGATGCACGCACGACAGCGACTTATCATTGAATGGATAATATTTGAAATCAGGCTTTGCGGTATGTTGTTCTA--CAAGTGAACAGG---CGC-----TTG-ACGAAGGAC----TTGAACGTT----GATTTCACTAATTGTATTTGGAA-ATTG-AT------AGAACATAGTTAC--CATAGAAACAAA-TTCTGAATATTTAAATACAGATAGGTCAAT-GCTAA-----ACAAAA--------GTA-----A-AA-TTCTAAAAGTGT-----------------TGCGTTTT--TT-T---T-----GTGAATTTAGGAA----ACGGGGGTTGTATGTTTCAAATCAATAAACAGA-AATG----AT--AGTCG----------C--AATAGA-T-CTTGATGAACAATTCCA-GGGAAGAAA-----GAAA-----C-A------TATTTTTAAA-AAAAT---GGTATGAAACGtgagatacacgg
gi|30 : TGATGATATAATA------TCTTTCTACCTTTCCTGGAT------ATTC-TTATC-AGATTAT--AT---TG----------TGATTAcgatgatttattgctgtttatctgcttttctaaagtatgtcggt
gi|35 : TCGATTTCT-TTGA-A-ATTT--ATTTTATTTGATAATATTACA------TCTGTCTACCTT
gi|4 : ta-TTGA-A-ATTT--ATTTTATTTGAGAATATAGCA------TCTTCCTACCTTTCCGGGAA------AGTT-TCATC-AAAATTG--GT---TG----------CGATTATTAT-TTCTTTATTACTACTTTTT-AT--TGATTT-GAAAC-A------------------------------CAC-AAAAT---CATTATCTT--ATAG----C--CTCCTT---G-TGCATCGATGCACGCACGGTAGCGACTTCTCATTGAATCAACACTATTTGAAATCCGGGCTTGTTTTAAGTTGTTCCG--CTCTTTAACAAG---CGT-----TTG-ACGAAATAT----TTGAACGTT----GATTTCAATAATTTTCCTGCGAA-ATTG-AA------ATAACA----TAC--CACTGAATCAAA-ATCTGAATATCAAAATACAGATAAACCAAT-TCTAA-----ACAAAAT-T-----ATAC----A-AA-CAATAACAGTGT-----------------TGCA---T--TTAT---TG----GTGAATTTATGTT----ACGAGTGCTGTATGTTTCAAATCAATAAAAAGT-AGTA----AT--CATTG----------C--AATAGG-T-TTTGACGAAACTTTTCA-GAGATGGTA-----GAAAGATATT-A------TATTATCAAAGAAAATGA-AATTTAAAAC
gi|5 : TTTTT-TTAA-A-ATTC--ATTTTATTTGATTAAATATCA------TCTTTCTATCATTCCTGGAT------AGTT-TCACC-AAAATCT--AA---TG----------CGATTATCAC-TTCTTG-----------TT-AT--TGGTTT-GAAAC-ATACAA-CCCTT-GT----GACCTAG--T--CAT-AAAAT---CAGTATCTTGAATAG----C--CTCCTT---G-TGCACTGATGCATGCATGACAGCAACTTCTCACTGAATGGATATTATTTGAAATCTGGGCGTGTGGTATGTTATTCCA--TTCTTGAACAAG---CAC-----TTA-ACAAAGTAC----TTGAACGTTCCCAGGTGGCAGTTGGCGTA-TGTAAACAT---AATTTTTCAGAAAA----TAC--CATAGAAACAAA-TTCTGAATATCAAACTACGGATAAACCAAT-TCTTA-----ACGAAAT-T-----ATAC----A-AA-CAATAAAAGTGT-----------------TACA---TTGTT-T---T-----GTGAATTTAGGTA----AAGTGGGTTTTATGTTTCAAATCAATAAAAAGA-TGTG----AT--AATCG----------C--AATATA-T-TTTGATGAAACTTTCCA-GGAAAGGTA-----GGAAGATGTT-ATAATAGTATTATCAAAAAAAAatgataatgaactcaatcttttattgcagtttaccggatggttgcgtttcta
gi|6 : gattTCGATTTAT-TTGA-A-ATTT--ATTTTATTTAATAATATAACA------TTTTGTTACCTTTCCTGTAA------AATT-TCATC-AAAATCT--AT---TG----------CGATCATCAC-TTTTTT-----------GT-AT--TGATTT-GAAAC-ATACAA-CCCGC-GT----CAGCTAATTT--CAC-AAAAT---CAGTATCTTTTATAG----C--CT---T---G-CACTTTGATGCACGCACGACAGCGACTTCTCATTGAATGGATAATATTTGAAATCCTGGCTTG--------------A--CTCTTGAACAAG---CGT-----TTG-GCGAAGTGT----TTGGACGTT----GATTTATACAATTTTATTGCGAG-ATTG-AA------AGAACA----TAC--CATATAAACAAA-TTCTGAATAATTAAATACAGATAAACAAAT-GCTAA-----ACGGAA--T-----ATAC----T-AG-CAATAAAATTGT-----------------TGCG---T--TT-A---T-----GTGAATTTAAGTT----AAGGGGGTTGTATGTTTCAAATCAATAAAAAGA-AGTG----AT--AATCG----------C--AATGGA-T-TTTGATGAAACTTACCA-GAACATATA-----GAAAGATGTG-A------TATTATCAAATACAAT-ATACTTTTAAATGA
gi|7 : ATCT--AT---AG----------CGATTACCAC-TTCTTT-----------TT-AT--TGATTT-GAATT-ATACAA-GCCC--AT----TACCTAACTT--CAC-ACAGT---CAGTATCTTGTATAG----T--CT---TCTTG-CGCATTGATACACGCATGACAGCAACTCCTCGTTAATTGGTTGATATATGGAATCCGGGCGCGTGGTATTTTGTTCCA--CTCTTCAACAAG---CGG-----TTA-ACG----------------GTT-------TTCAGTAAAATTATTGCTAA-ATTG-AA------AGAAAAAC--TAT--CATGGAAAGAAT-ATCTGAATATTAAAATACAGATAAATCAAC-TCTAA-----ATGAAA--TT----ATAC----A-AA-CAATAAAAGTGT-----------------TTCG---T--TT-T---TT----GTGATTTTAGGTT----ATGGGGATTGAATGTTTCAAATCAATAAAAATA-AATG----AT--AATCA----------C--AACATATT-TTTAATGGGAAATTCCA-GTAAAGATA-----GAAA-ATGTA-A------TATTACTAAATCAAAT-A-AATATAAAA
gi|8 : tttaatcgatatcttaaccttcattttatttaataatatcacgcTTTTT-TTG-----TTT--GTTTT-TTTGATAATATAACA------TTG----ACATTTTCTGGAA------ATTT-TCATC-AAAATAT--AT---TG----------CTATACTCACTTTTTTT-----------TT-AT--TAATTT-GAAAC-aaaatc
gi|8 : acctccttacgtaggtgcatgcatgtaacatcctggtatcccgttacgtaggtacatgtcggtaacatcctggtatcccgttacgtaggtacatgtcggtaatatcctggtatttccttacataggtgtcgtatgtctttataagtagctgccttcaaagacctgttcaatcctcacatacaccgaacgactttaaaaacgatattctcagagaaacagcaataaaactttaagatctttatcgttttgttgtt-T---T-----GCGCATTGATGCA-----CGGGGGTCGTATGTTTAAAATTAATAAAAAGA-GGTG----AT--AATCA----------C--AATAGA-T-TCTGATGAAAATTTCCA-GGAATGATA-----GAGAGATGAT-A------TATTATCCAATAAAAT-A-CATTTTAAAcaccttgcgcattgatgcacgggggtcgtatgtttaaaattaataaaaagaggtgataatcacaatagattctgatgaaaatttccaggaatgatagagagatgatatattatccaataaaatacattttaaataaat
gi|9 : acctccttacgtaggtgcatgcatgtaacatcctggtatcccgttacgtaggtacatgtcggtaacatcctggtatcccgttacgtaggtacatgtcggtaatatcctggtatttccttacataggtgtcgtatgtctttataagtagctgccttcaaagacctgttcaatcctcacatacaccgaacgactttaaaaacgatattctcagagaaacagcaataaaactttaagatctttatcgttttgttgtttttttttgtttgtttttttgataatataacattgacattttctggaaattttcatcaaaatatattgctatactcactttttttttattaatttgaaaccaccTTTTT-TTG-----TTT--GTTTT-TTTGATAATATAACA------TTG----ACATTTTCTGGAA------ATTT-TCATC-AAAATAT--AT---TG----------CTATACTCACTTTTTTT-----------TT-AT--TAATTT-GAAAC-taaat
gi|9 : acctccttacgtaggtgcatgcatgtaacatcctggtatcccgttacgtaggtacatgtcggtaacatcctggtatcccgttacgtaggtacatgtcggtaatatcctggtatttccttacataggtgtcgtatgtctttataagtagctgccttcaaagacctgttcaatcctcacatacaccgaacgactttaaaaacgatattctcagagaaacagcaataaaactttaagatctttatcgttttgttgtt-T---T-----GCGCATTGATGCA-----CGGGGGTCGTATGTTTAAAATTAATAAAAAGA-GGTG----AT--AATCA----------C--AATAGA-T-TCTGATGAAAATTTCCA-GGAATGATA-----GAGAGATGAT-A------TATTATCCAATAAAAT-A-CATTTTAAAcaccttgcgcattgatgcacgggggtcgtatgtttaaaattaataaaaagaggtgataatcacaatagattctgatgaaaatttccaggaatgatagagagatgatatattatccaataaaatacattttaaataaat
8 sequences could not be aligned to this reference sequence:
Unaligned ( gi|27 ): CCCAATCTGATGACCATACACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTTT
Unaligned ( gi|28 ): ATTAGGTGTTTATATAGAATATTAGCCAAATTAAACTAAAAGATAGCCATCCTTAAAAGAATATC
Unaligned ( gi|29 ): AAAGAACTTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTGTATGT
Unaligned ( gi|31 ): ATACACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
Unaligned ( gi|32 ): AAGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGT
Unaligned ( gi|33 ): TGAAAGACTAGAAACATTACCCTCAGATAAACACAATAAAACATCAAGTTCTTTATTG
Unaligned ( gi|34 ): ACACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
Unaligned ( gi|36 ): AAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
Alignments
lowQualScore : 11111111111 222222222222 111 111111 1111111 1111 33333333 22222222222222222 111 11111 1111111111
lowQualScore : 2 2 2 22 555555 555555 0 1 1 22 666 7777777777 3 33333333333 1 22 1 3 1 2 4444 22 2 444 666666666666 444 2 1 55 000 99999 3 000000 7777 0 3 6 0000000 2 8888 55 44 44 88888 1 22222222 6666666 2 00000000000000000 555 33 2 444 44444 5555 2 4444 33 0000000000 33 2 2 2 0 66666 2 777777 0 222 1
lowQualScore : . . . .. ...... ...... . . . .. ... .......... . ........... . .. . . . . .... .. . ... ............ ... . . .. ... ..... . ...... .... . . . ....... . .... .. .. .. ..... . ........ ....... . ................. ... .. . ... ..... .... . .... .. .......... .. . . . . ..... . ...... . ... .
lowQualScore : 1 1 1 88 222222 555555 4 9 8 44 111 6666666666 5 33333333333 7 33 8 5 9 0 2222 99 1 444 555555555555 777 7 0 00 000 11111 6 111111 1111 5 3 7 9999999 5 8888 00 11 77 33333 2 00000000 4444444 9 00000000000000000 000 99 5 444 77777 3333 2 7777 11 3333333333 22 4 4 5 4 22222 5 222222 2 999 0
consensus : TCGATTTTT-TTGA-A-ATTT--ATTTTATTTGATAATATAACA------TCTTTCTACCTTTCCTGGAA------ATTT-TCATC-AAAATCT--AT---TG----------CGATTATCAC-TTCTTT-----------TT-AT--TGATTT-GAAAC-ATACAA-CCCCC-GT----TACCTAAATT--CAC-AAAAT---CAGTATCTTGTATAG----C--CT---T---G-CGCATTGATGCACGCACGACAGCGACTTCTCATTGAATGGATAATATTTGAAATCCGGGCTTGTGGTATGTTGTTCCA--CTCTTGAACAAG---CGC-----TTG-ACGAAGTAC----TTGAACGTT----GATTTCAATAATTTTATTGCGAA-ATTG-AA------AGAACA----TAC--CATAGAAACAAA-ATCTGAATATCAAAATACAGATAAACCAAT-TCTAA-----ACGAAA--T-----ATAC----A-AA-CAATAAAAGTGT-----------------TGCG---T--TT-T---T-----GTGAATTTAGGTA----ACGGGGGTTGTATGTTTCAAATCAATAAAAAGA-AGTG----AT--AATCG----------C--AATAGA-T-TTTGATGAAAATTTCCA-GGAAAGATA-----GAAAGATGTT-A------TATTATCAAATAAAAT-A-AATTTNAAACGA
Reference ( family-3390 ) : TCGATTTTT-TTGA-A-ATTT--ATTTTATTTGATAATATAACA------TCTTTCTACCTTTCCTGGAA------ATTT-TCATC-AAAATCT--AT---TG----------CGATTATCAC-TTCTTT-----------TT-AT--TGATTT-GAAAC-ATACAA-CCCCC-GT----TACCTAAATT--CAC-AAAAT---CAGTATCTTGTATAG----C--CT---T---G-CGCATTGATGCACGCACGACAGCGACTTCTCATTGAATGGATAATATTTGAAATCCGGGCTTGTGGTATGTTGTTCCA--CTCTTGAACAAG---CGC-----TTG-ACGAAGTAC----TTGAACGTT----GATTTCAATAATTTTATTGCGAA-ATTG-AA------AGAACA----TAC--CATAGAAACAAA-ATCTGAATATCAAAATACAGATAAACCAAT-TCTAA-----ACGAAA--T-----ATAC----A-AA-CAATAAAAGTGT-----------------TGCG---T--TT-T---T-----GTGAATTTAGGTA----ACGGGGGTTGTATGTTTCAAATCAATAAAAAGA-AGTG----AT--AATCG----------C--AATAGA-T-TTTGATGAAAATTTCCA-GGAAAGATA-----GAAAGATGTT-A------TATTATCAAATAAAAT-A-AATTTNAAACGA
gi|1 : TTGATGTTT-TTGA-A-ATTT--ATTTTATTTGATGATAAAGCA------TCTTTCTTCCTTTCCTGGAA------ATTT-TCTTCCAAAATTT--AT---TG----------CGATTTTCAT-TTCTTT-----------TT-AT--TGATTTTGAAAC-ATAAAATCCCNN-NN----NNNNNNNNNN--NNN-NNNNN---NNNNNNNNNNNNNNN----N--NN---N---N-NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTCTTGAATAAGG--TGCCCATTTTT-ACGA---------TT---CAGT----GATTTCAATAATTTTATTGCAAA-ATTATAC------AAAACT----AAC--CATAGAAACAAA-ATCTGAATATCAAAATACAGATAAACCAAT-ACTTA-----ACAAAA--TT----ATAC----A-AA-CAATAGAAGTGT-----------------TGCA---T--TT-T---TTT---GTGAACTAAGTTA----ATGGGGGTTGTAAGTTTTAAATCAACAGAAAGA-AGTG----AT--AATCA----------C--AATAGA-T-TTTAATGAAAGTTTCCA-GGAAAGATA------AAAGATTCT-A------TTTTATTGAAT-AAAT-A-AATTT
gi|10 : tnnnnnnnnnnaaacattaccctcagataaacacaataaaacatcaagttctttaAATTTAACG------TTTTCCT---TTTCCTAGAAGAAAAAAT----CATA-AAAATCT--AC---TG----------CAAATATCGC-TTCTTT-----------G--AT--TACTTA-GAAAC-ATACAA-ACCCCAGT----TACCTAAATT--CAC-AAAAT---CAGTATCTTGTATAAACCTC--CT---T---G-CGCATTGATGTGCGCACGACGGCGA----------------TATTTTTTACAATCCGACCTTGTGGTATGTTGTTCCG--CTTTTGACTAAG---CGC-----TTG-CCAAAGTACGTACTTGAACGTT----AATTTCAAAAACTGTATTGTAAA------------------------TAT--CATAGAAACAAA-ATCAGAATATCAAAATGCAGATAAACCAAT-TC-AA-----ACGAAAT-T-----ATAC----A-AA-CAAT--AAGTGTTTTTTATGATTTTTTTGTGTG---T--TT-T---TATTTCGTTTATTTAAATT----ACGGAGATTGTGTGTTTCAAAT-----AAAAAA-AGTG----AT--TAACG----------C--TATAGA-TATTTAATG-ATATTTCAA-ATAAATTTA-----AAAAGATGTC-A------TATAATCAAAT-AAAT-A-GATTTAAAc
gi|11 : TCGATTTAT-ATGA-A-ATTG--ATGGTATTTGATAATATTTAA------TCTTTCTACCTTTC-------------------ATC-AAAATCT--AT---TG----------AAATTATCAC-TTCTTT-----------GT-AT--TGATTT-TAAAC-ATACAA-CCTCC-AT----TATCTAAATT--AAC-AAAAT---CAGTACCTTATACAG----C--CT---T---G-TGCATTGATGCATGCATGACAGCAACTTCTCAGTGAATAGATACTATTTGAAATTCGGGCTTGTGGTATTTCGTTCCA--CTCTTGAACAAG---TGC-----TTG-GCAAAGTAC----TTGAACACT----AATTTCAATAATTTTAATGCAA
gi|12 : actaagaaataagcacagagaatcaattagtcatttttttggtattcaaatctaatgaagaaatacacctgaccaaaaaacttttaaaaacgtaacactccgacaaacagcaattaaacatctttaTCTTT-----------TT-ATCTTTCCTT-GAAATTGT-CA---CCTT-GT----TGTC-AAATTGTCAC-AAAAT---CATTATCTTGTATAG----CATCC---T---GACAAATTGATGCACACACAACATTTACTTCTCATTGAATGGTTAATATTTGAAATCCAGACTTGTGGTATGTTGTTGCA--CTCTTTAACTATATCCAC-----TTTCACG--GT------TTGG----T----GATTTCATTAATTTTATTACAAA-ATTG-AA------AGAAAA----TAC--CAAAGAAACAAT-ATCTGAATATCAAAACACAGATAAACAAAT-TCTAA-----ACGAAA--TTGATAATAC----A-AA-CAATAAAAGTGT-----------------TGCA---T--TT-T---T-----GTGAATTTAGGTA----ATGGGGGTTGTATGTTTCAAAATAATAAAAAGA-AGTG----AT--AATCG----------C--AACAGA-T-GTTGATGAAAATTTCCA-GGAAATGTAAAAACGAAAGATTTT-A------TACTATCAAATAAAAT-A-AATCTAAAAgtgtatttaagaatcagagtctcatttcccacaaataaaagcttcgcaatattta
gi|13 : aaatttatatatgtatttaTTGATTGTT-CTGA-A-ATTT--ATTTTATTTGAAAAAAAAACA------TCTTTCTACTTCTCCTGGAA------ATTT-TCATC-AAAATCTGTAT---AG----------CGATTATTAC---ATTT-----------TT-AT--TGATTT-GAAAC-ACACAA-CCCCC-GT----TACCTAAATT--CAC-AAAAAAAACAGTATTATGTATAG----C--CTCTTT---G-TGCATTGATGCATGCACGACAGCGACTTCACATTGAATAAATAATATCTGAAATCCGGGCTTGTGGTATGTCGTTCCA--CTCTTTAATTAG---CGT-----TTG-ACGAAATAT----TTGAACGTC----GATTTCAATAATTTTATTGCGAA-ATTGTAC------AAAACA----
gi|13 : taCGAAA--TT----GTAC----A-AAACAATAAAAGTGT-----------------TGCG---T--TT-TTTTT-----GTGAATTTAGGTA----ACGGGGGTTATTTG-----AAT-AGTAGATAGATATTGTTTTATGAAAT-G----------A--AATAAA-T-TTTAAataaaagtgttgcgttttttttgtgaatttaggtaacgggggttatttgaatagtagatagatattgttttatgaaatgaaataaattttaaaaaca
gi|14 : tattgattgttctgaaatttattttatttgaaaaaaaaacatctttctacttctcctggaaattttcatcaaaatctgtatagcgattattacatttttattgatttgaaacacacaacccccgttacctaaattcacaaaaaaaacagtattatgtatagcctctttgtgcattgatgcatgcacgacagcgacttcacattgaataaataatatctgaaatccgggcttgtggtatgtcgttccactctttaattagcgtttgacgaaatatttgaacgtcgatttcaataattttattgCGATTCTT-TT---A-ATTTTCCTTTTATTTGATGATATAACA------T------A--TTCCCTGGAA------ATTT-TCATC-CAAATCT--AT---TG----------CAGTTTTGAC-TTCTTT-----------TT-GT--TGATTT-AAACT-ATACAA-ATCAC-GT----TACCTAAATT--CAC-AAAAT---CAGTATCTTGTATAGCCA-C--CT---T---G-CGAGTTGATGCACGaaaca
gi|14 : ATTTTT-TTAA-A-CTTT--CTTTTATTTGATAATATAACA------TCCTTTTACTTTTCGTGCAA------ATTT-TCATC-AATATCT--TT---TA----------CGATTAACGC-TTCTTT-----------TT-AT--TGA-TT-GAAAC-ATACAG-CCATC-G-----TGCATCAACT--CGC-AAatggctgtatgtttcaatcaataaaaagaagcgttaatcgtaaaagatattgatgaaaatttgcacgaaaagtaaaaggatgttatattatcaaataaaagaaagtttaaaaaaatattgataaagaactcaatgtcttatttatcgccgttt
gi|15 : cgattcttttaattttccttttatttgatgatataacatattccctggaaattttcatccaaatctattgcagttttgacttctttttgttgatttaaactatacaaatcacgttacctaaattcacaaaatcagtatcttgtatagccaccTCAATATTC-TTAA-A-ATTA--ACTTTATTTGATAATATAACA------TCTTTCTACCTTTCCTGCAA------AATG-TCATC-AAACTCT--AT---TC----------TGACTATCAC-TTCTTT-----------TT-GT--AGATTT-GAAAC-ATACAG-CCCAT-GT----CACCT-TATT--CAC-AAAAT---CACTATCTTGTATAGTCT-C--CT---T---G-CTCACTGATGCCCACACAACAACAAattgataaagaactcaatgtcttatttatcgccgttt
gi|15 : AC----ACAA-CAACAAA---GT-----------------TACA---A---------------GTGAATTTAGGTATCAAACGGGGGTTGTATGATTCAAATCAATAAAAATA-GATG----AT--Aagttacaagtgaatttaggtatcaaacgggggttgtatgattcaaatcaataaaaatagatgatactgaacagtctactgaagagcaaactttc
gi|15 : tcaatattcttaaaattaactttatttgataatataacatctttctacctttcctgcaaaatgtcatcaaactctattctgactatcacttctttttgtagatttgaaacatacagcccatgtcaccttattcacaaaatcactatcttgtatagtctccttgctcactgatgcccTATCAT-CTATTT-----------TT-AT--TGATTT-GAATC-ATACAA-CCCCC-GTTTGATACCTAAATT--CAC-ctgaacagtctactgaagagcaaactttc
gi|16 : tcaatattcttaaaattaactttatttgataatataacatctttctacctttcctgcaaaatgtcatcaaactctattctgactatcacttctttttgtagatttgaaacatacagcccatgtcaccttattcacaaaatcactatcttgtatagtctccttgctcactgatgcccacacaacaacaaagttacaaATTTTATTGCAAA-ATTG-AA------AGAAAA----AAAAACATAAAAACAAA-ATTTGAATATCAAAATACATATAAACCCAT-TCTAA-----ACAAAAG-T-----ATAA----A-AA-CAAAAATAGTGT-----------------TACG---T--TT-T---T-----GT-AATTTAGGTA----GCGAGAGTTGTATGTTTCAAATCAATAAAAAGA-TGTA----AT--AATTG----------C--AATAGT-A-TTTAATG-AAATTTCCATAGAAAGAAA-----GATAGATGTT-A------TAGTATCAAGTGAAAT-A-AATTTCAAActgaacagtctactgaagagcaaactttc
gi|17 : actGTTTTATGAATCAAATCAATAAAAAGA-AGTG----AT--AATCGTCATAGATCGC--AATTGA-T-TTTGAAGAAAATTTACA-GACATGGTT-----AAAAGATGTT-A------CTTTATGAAATACAAT-A-atatt
gi|17 : catttttaaaaaataaaTCGATTTTTATT------TTT--AATTTATTTGATAATAAAAAA------ATTTTCTATAGTTTTTGTAA------AGTT-TCATC-AATATC------------------------TATCAC-TTCTTT-----------TTAAT--TTTTTT-GAAAC-ATACAA-CCCCC-GT----TACCattggtaacgggggttgtatgtttcaaaaaaattaaaaagaagtgatagatattgatgaaactttacaaaaactatagaaaatttttttattatcaaataaattaaaaataaaaatcga
gi|18 : catttttaaaaaataaatattgtatttcataaagtaacatcttttaaccatgtctgtaaattttcttcaaaatcaattgcgatctatgacgattatcacttctttttattgatttgattcataaaacatt----GATTTCAATAATTCTATTGCAAA-AACG-AA------ATAAAA----TAC--CATAG-AACAGACATCTTAATATCAAAGTACAGATAAACCAATAACTAA-----AC-AGA--T-----TTAT-----------AT---AGTGT-------------------CG---T--TT-G---G-----GGGATTTTAAGTA----ACGGGGGATGTATTGTTCAAATCAATAAAAAGA-ATTG----AT--AACCG----------CATAATAA----TTTGATAAATATTTC------AAG--A-----AAAAG--GTTAA------CATTATGAAATAAAAT-A-AATTTTGA
gi|19 : CGATTTTT-TTAACA-AAAT--ATTT-ATTTCATAAAATAACA------TCTTTCAACCATTTCTGTTA------ATTTGTTATC-AAAATCT--AT---TG----------CAATTATCAC-TTCTTT-----------TC-AT--TTATTT-CAAAC-AAACAA-CCCCC-GT----TACCTAAATT--CACAAAAAT---CAGTATTTTGTATAGCTA-C--CT---T---G-CGCATTGATGCACGCGCGACAGCGtaagtcaataaag
gi|19 : AAC-GTACAA-CCCCA-AT----TACCTAAATT--CAC-Agatgtatatgtgaatttaggtaattggggttgtacgttgcttttcttaaat
gi|2 : cgatttttttaacaaaatatttatttcataaaataacatctttcaaccatttctgttaatttgttatcaaaatctattgcaattatcacttcttttcatttatttcaaacaaacaacccccgttacctaaattcacaaaaatcagtattttgtatagctaccttgcgcattgatgcacgcgcgacagcggatgtataGATTTAT-TTGA-A-ATTC--GTTTTATTTGGTAATATAACA------TCTTTCTACCTTTCATGAAA------ATTT-TCATC-GAAATCT--ATAATTG----------TGATTATCTC-GTCTTT-----------TT-AT--TGTGTT-GAAAC-ATACTA-CCCCC-TT----TACCTAAATT--CAC-AAAAC---CAATAGCTTGTATAG----C--CTCCTT---A-CGCATTGATGCACGCACGACAGCGACTTATCATTGAATGGATAATATTTGAAATCAGGCTTTGCGGTATGTTGTTCTA--CAAGTGAACAGG---CGC-----TTG-ACGAAGGAC----TTGAACGTT----GATTTCACTAATTGTATTTGGAA-ATTG-AT------AGAACATAGTTAC--CATAGAAACAAA-TTCTGAATATTTAAATACAGATAGGTCAAT-GCTAA-----ACAAAA--------GTA-----A-AA-TTCTAAAAGTGT-----------------TGCGTTTT--TT-T---T-----GTGAATTTAGGAA----ACGGGGGTTGTATGTTTCAAATCAATAAACAGA-AATG----AT--AGTCG----------C--AATAGA-T-CTTGATGAACAATTCCA-GGGAAGAAA-----GAAA-----C-A------TATTTTTAAA-AAAAT---GGTATGAAACGgcttttcttaaat
gi|20 : CGATTTTT-TTTA-ACATTT--ACTTTATTTGAAAATATAACA------TCTTTCTACTTTTCCTGGAA------AGTT-TCCAC-ACAATCT--AT---TG----------CCAGCATCAC--GATTT-----------TT-AT--TGATTT-GAAAC-ATACAA-CCACT-GT----TACCTAAATT--CAT-AAAAT---CAGTAACTTGTATAGCAT-C--CT---T---G-TGCATTGGTGCACCCACGACAGCGAATTCTCATcgatgatttattgctgtttatctgcttttctaaagtatgtcggtg
gi|21 : ATAAACCAAT-TCTAAGTTTTACAAAAAAT-----ATACTTGTG-AA-CAATAAAAGTGT-----------------TGCGATTT--TT-T---T-----GTCAGTTTAGATA----ATGGGGGTTGTATATTTCAATTCGATAAAAACA--GTG----TT--CATTG----------C--AATAGA-T-TTTGATGAAACTTTCCA-GATATAGTA-----GAATGATATT-A------TATTATCAAATAAAAT-A-AATTTTAAA
gi|22 : TCGATAATT-TTGG-A-ATTT--ATTTTATTTGAAAATATAACA------TCTGTCTAACTTTCCTGGAA------AATT-TCATC-AAAATCT--GT---TG----------CGATTATCAC-CTCTTT-----------TT-AT--TGaa
gi|23 : TTGATTTTT-TTGA-A-ATTT--ATTTTATTTGATTATATAACAGTTACATCTTTCTACTATTCCTGGAA------ATTT-TCATT-AAAATCT--AG---TG----------TGATTATCGC-TTCTTT-----------TT-AT--TGATT----AACTATATAA-TCtacagtccgtaatgtttctatgctgtttatctgagttatatgtttctaaagtagta
gi|24 : aT--ATTGTATTTTATTAAGTAACA------TCTTTTAACCATGTCTGTAA------ATTT-GCTTC-AAAATCA--AT---TGCGATCTATGACGATTATCAC-TTCTTTCGGTGAA----TC-AT--TGAT
gi|25 : taaaaaaaaTTGTATGTTTCAATTCAATAAAAAGA-AGCA----AT--ATTCA----------C--AATAAA-A-TTTGATAAAACTTCTCA-GAAAAAATA-----GAAAGATATT-T------TATAATAAAATAAAAT-A-AACTTCAAAgtaa
gi|26 : tATC-CAAATCT--AT---TG----------CGATTATCGC-TTCTTT-----------TA-AT--TGGTTT-GAAAC-ATACAG-TCCTA-GT----GACCTAAATT--CAT-AAAAT---CAGTATATTGTATattatt
gi|3 : GATTTAT-TTGA-A-ATTC--GTTTTATTTGGTAATATAACA------TCTTTCTACCTTTCATGAAA------ATTT-TCATC-GAAATCT--ATAATTG----------TGATTATCTC-GTCTTT-----------TT-AT--TGTGTT-GAAAC-ATACTA-CCCCC-TT----TACCTAAATT--CAC-AAAAC---CAATAGCTTGTATAG----C--CTCCTT---A-CGCATTGATGCACGCACGACAGCGACTTATCATTGAATGGATAATATTTGAAATCAGGCTTTGCGGTATGTTGTTCTA--CAAGTGAACAGG---CGC-----TTG-ACGAAGGAC----TTGAACGTT----GATTTCACTAATTGTATTTGGAA-ATTG-AT------AGAACATAGTTAC--CATAGAAACAAA-TTCTGAATATTTAAATACAGATAGGTCAAT-GCTAA-----ACAAAA--------GTA-----A-AA-TTCTAAAAGTGT-----------------TGCGTTTT--TT-T---T-----GTGAATTTAGGAA----ACGGGGGTTGTATGTTTCAAATCAATAAACAGA-AATG----AT--AGTCG----------C--AATAGA-T-CTTGATGAACAATTCCA-GGGAAGAAA-----GAAA-----C-A------TATTTTTAAA-AAAAT---GGTATGAAACGtgagatacacgg
gi|30 : TGATGATATAATA------TCTTTCTACCTTTCCTGGAT------ATTC-TTATC-AGATTAT--AT---TG----------TGATTAcgatgatttattgctgtttatctgcttttctaaagtatgtcggt
gi|35 : TCGATTTCT-TTGA-A-ATTT--ATTTTATTTGATAATATTACA------TCTGTCTACCTT
gi|4 : ta-TTGA-A-ATTT--ATTTTATTTGAGAATATAGCA------TCTTCCTACCTTTCCGGGAA------AGTT-TCATC-AAAATTG--GT---TG----------CGATTATTAT-TTCTTTATTACTACTTTTT-AT--TGATTT-GAAAC-A------------------------------CAC-AAAAT---CATTATCTT--ATAG----C--CTCCTT---G-TGCATCGATGCACGCACGGTAGCGACTTCTCATTGAATCAACACTATTTGAAATCCGGGCTTGTTTTAAGTTGTTCCG--CTCTTTAACAAG---CGT-----TTG-ACGAAATAT----TTGAACGTT----GATTTCAATAATTTTCCTGCGAA-ATTG-AA------ATAACA----TAC--CACTGAATCAAA-ATCTGAATATCAAAATACAGATAAACCAAT-TCTAA-----ACAAAAT-T-----ATAC----A-AA-CAATAACAGTGT-----------------TGCA---T--TTAT---TG----GTGAATTTATGTT----ACGAGTGCTGTATGTTTCAAATCAATAAAAAGT-AGTA----AT--CATTG----------C--AATAGG-T-TTTGACGAAACTTTTCA-GAGATGGTA-----GAAAGATATT-A------TATTATCAAAGAAAATGA-AATTTAAAAC
gi|5 : TTTTT-TTAA-A-ATTC--ATTTTATTTGATTAAATATCA------TCTTTCTATCATTCCTGGAT------AGTT-TCACC-AAAATCT--AA---TG----------CGATTATCAC-TTCTTG-----------TT-AT--TGGTTT-GAAAC-ATACAA-CCCTT-GT----GACCTAG--T--CAT-AAAAT---CAGTATCTTGAATAG----C--CTCCTT---G-TGCACTGATGCATGCATGACAGCAACTTCTCACTGAATGGATATTATTTGAAATCTGGGCGTGTGGTATGTTATTCCA--TTCTTGAACAAG---CAC-----TTA-ACAAAGTAC----TTGAACGTTCCCAGGTGGCAGTTGGCGTA-TGTAAACAT---AATTTTTCAGAAAA----TAC--CATAGAAACAAA-TTCTGAATATCAAACTACGGATAAACCAAT-TCTTA-----ACGAAAT-T-----ATAC----A-AA-CAATAAAAGTGT-----------------TACA---TTGTT-T---T-----GTGAATTTAGGTA----AAGTGGGTTTTATGTTTCAAATCAATAAAAAGA-TGTG----AT--AATCG----------C--AATATA-T-TTTGATGAAACTTTCCA-GGAAAGGTA-----GGAAGATGTT-ATAATAGTATTATCAAAAAAAAatgataatgaactcaatcttttattgcagtttaccggatggttgcgtttcta
gi|6 : gattTCGATTTAT-TTGA-A-ATTT--ATTTTATTTAATAATATAACA------TTTTGTTACCTTTCCTGTAA------AATT-TCATC-AAAATCT--AT---TG----------CGATCATCAC-TTTTTT-----------GT-AT--TGATTT-GAAAC-ATACAA-CCCGC-GT----CAGCTAATTT--CAC-AAAAT---CAGTATCTTTTATAG----C--CT---T---G-CACTTTGATGCACGCACGACAGCGACTTCTCATTGAATGGATAATATTTGAAATCCTGGCTTG--------------A--CTCTTGAACAAG---CGT-----TTG-GCGAAGTGT----TTGGACGTT----GATTTATACAATTTTATTGCGAG-ATTG-AA------AGAACA----TAC--CATATAAACAAA-TTCTGAATAATTAAATACAGATAAACAAAT-GCTAA-----ACGGAA--T-----ATAC----T-AG-CAATAAAATTGT-----------------TGCG---T--TT-A---T-----GTGAATTTAAGTT----AAGGGGGTTGTATGTTTCAAATCAATAAAAAGA-AGTG----AT--AATCG----------C--AATGGA-T-TTTGATGAAACTTACCA-GAACATATA-----GAAAGATGTG-A------TATTATCAAATACAAT-ATACTTTTAAATGA
gi|7 : ATCT--AT---AG----------CGATTACCAC-TTCTTT-----------TT-AT--TGATTT-GAATT-ATACAA-GCCC--AT----TACCTAACTT--CAC-ACAGT---CAGTATCTTGTATAG----T--CT---TCTTG-CGCATTGATACACGCATGACAGCAACTCCTCGTTAATTGGTTGATATATGGAATCCGGGCGCGTGGTATTTTGTTCCA--CTCTTCAACAAG---CGG-----TTA-ACG----------------GTT-------TTCAGTAAAATTATTGCTAA-ATTG-AA------AGAAAAAC--TAT--CATGGAAAGAAT-ATCTGAATATTAAAATACAGATAAATCAAC-TCTAA-----ATGAAA--TT----ATAC----A-AA-CAATAAAAGTGT-----------------TTCG---T--TT-T---TT----GTGATTTTAGGTT----ATGGGGATTGAATGTTTCAAATCAATAAAAATA-AATG----AT--AATCA----------C--AACATATT-TTTAATGGGAAATTCCA-GTAAAGATA-----GAAA-ATGTA-A------TATTACTAAATCAAAT-A-AATATAAAA
gi|8 : tttaatcgatatcttaaccttcattttatttaataatatcacgcTTTTT-TTG-----TTT--GTTTT-TTTGATAATATAACA------TTG----ACATTTTCTGGAA------ATTT-TCATC-AAAATAT--AT---TG----------CTATACTCACTTTTTTT-----------TT-AT--TAATTT-GAAAC-aaaatc
gi|8 : acctccttacgtaggtgcatgcatgtaacatcctggtatcccgttacgtaggtacatgtcggtaacatcctggtatcccgttacgtaggtacatgtcggtaatatcctggtatttccttacataggtgtcgtatgtctttataagtagctgccttcaaagacctgttcaatcctcacatacaccgaacgactttaaaaacgatattctcagagaaacagcaataaaactttaagatctttatcgttttgttgtt-T---T-----GCGCATTGATGCA-----CGGGGGTCGTATGTTTAAAATTAATAAAAAGA-GGTG----AT--AATCA----------C--AATAGA-T-TCTGATGAAAATTTCCA-GGAATGATA-----GAGAGATGAT-A------TATTATCCAATAAAAT-A-CATTTTAAAcaccttgcgcattgatgcacgggggtcgtatgtttaaaattaataaaaagaggtgataatcacaatagattctgatgaaaatttccaggaatgatagagagatgatatattatccaataaaatacattttaaataaat
gi|9 : acctccttacgtaggtgcatgcatgtaacatcctggtatcccgttacgtaggtacatgtcggtaacatcctggtatcccgttacgtaggtacatgtcggtaatatcctggtatttccttacataggtgtcgtatgtctttataagtagctgccttcaaagacctgttcaatcctcacatacaccgaacgactttaaaaacgatattctcagagaaacagcaataaaactttaagatctttatcgttttgttgtttttttttgtttgtttttttgataatataacattgacattttctggaaattttcatcaaaatatattgctatactcactttttttttattaatttgaaaccaccTTTTT-TTG-----TTT--GTTTT-TTTGATAATATAACA------TTG----ACATTTTCTGGAA------ATTT-TCATC-AAAATAT--AT---TG----------CTATACTCACTTTTTTT-----------TT-AT--TAATTT-GAAAC-taaat
gi|9 : acctccttacgtaggtgcatgcatgtaacatcctggtatcccgttacgtaggtacatgtcggtaacatcctggtatcccgttacgtaggtacatgtcggtaatatcctggtatttccttacataggtgtcgtatgtctttataagtagctgccttcaaagacctgttcaatcctcacatacaccgaacgactttaaaaacgatattctcagagaaacagcaataaaactttaagatctttatcgttttgttgtt-T---T-----GCGCATTGATGCA-----CGGGGGTCGTATGTTTAAAATTAATAAAAAGA-GGTG----AT--AATCA----------C--AATAGA-T-TCTGATGAAAATTTCCA-GGAATGATA-----GAGAGATGAT-A------TATTATCCAATAAAAT-A-CATTTTAAAcaccttgcgcattgatgcacgggggtcgtatgtttaaaattaataaaaagaggtgataatcacaatagattctgatgaaaatttccaggaatgatagagagatgatatattatccaataaaatacattttaaataaat
blockSeqs : A C C TC GTTACA GAAAAA G . GT AAT CGATCTATGA T ATTACTACTTT A CT . T . A TTGA GT A AAA ACCTCCT CTT A T . ATC . C ACGTAC CCCA C T ATTTTTC A TAGT AA CA AA GTTTT G TTGATA CTTGTG A TTTTTATGATTTTTTTG TTT TG A TTT ATTTC TCAA T TTTT GA TCATAGATCG AT T A T AAAAC A TAATAG GA A
blockSeqs : . . . . . . . . . AAT . T CGGTGAA . . . T . . . . . . CCTCTT . . C . . . . AC . . . A C TAGT . A T . G AAT CAC . . ATT . . . G . . . . . . . . . . . . AT C
blockSeqs : . . . . . . . . . . . . . . . . . . . . . . . CCACCT . . A . . . . AT . . . C A AC . A T . G TT CA . . TTT . . . T . . . . . . . . . . . . A T
blockSeqs : . . . . . . . . . . . . . . . . . . . . . . . TCTCCT . . A . . . . AC . . . A A . . A T . A TT CA . . . . . . . . . . . . . . . . . . . A G
blockSeqs : . . . . . . . . . . . . . . . . . . . . . . . CTACCT . . A . . . . AC . . . A C . . T G . A GT CA . . . . . . . . . . . . . . . . . . . A T
blockSeqs : . . . . . . . . . . . . . . . . . . . . . . . CCTCCT . . A . . . . AT . . . T C . . T T . A TT AA . . . . . . . . . . . . . . . . . . . A C
blockSeqs : . . . . . . . . . . . . . . . . . . . . . . . CATCCT . . C . . . . AC . . . T C . . A G . A TT CA . . . . . . . . . . . . . . . . . . . A G
blockSeqs : . . . . . . . . . . . . . . . . . . . . . . . CCTCCT . . T . . . . GT . . . A A . . T T . A TT CA . . . . . . . . . . . . . . . . . . . A A
blockSeqs : . . . . . . . . . . . . . . . . . . . . . . . CCTCCT . . A . . . . . . . . A C . . T T . G T CT . . . . . . . . . . . . . . . . . . . A T
blockSeqs : . . . . . . . . . . . . . . . . . . . . . . . CCTCCT . . A . . . . . . . . A A . . A G . G T CA . . . . . . . . . . . . . . . . . . . A A
blockSeqs : . . . . . . . . . . . . . . . . . . . . . . . CATCC . . . . . . . . T . G . T . . . . . . . . . . . . . . . . . . . A T
blockSeqs : . . . . . . . . . . . . . . . . . . . . . . . CCT . . . . A . . . . . . . . . . . . . . . . . . . A T
blockSeqs : . . . . . . . . . . . . . . . . . . . . . . . CCT . . A . . . . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . . . . . . . . . TCT . . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . .
blockSeqs : . . . . . . . .
blockSeqs : . . .
blockSeqCons : CCTCCT****** ** *** ***** AC**** *****
originalCons : TCGATTTTT-TTGA-A-ATTT--ATTTTATTTGATAATATAACA------TCTTTCTACCTTTCCTGGAA------ATTT-TCATC-AAAATCT--AT---TG----------CGATTATCAC-TTCTTT-----------TT-AT--TGATTT-GAAAC-ATACAA-CCCCC-GT----TACCTAAATT--CAC-AAAAT---CAGTATCTTGTATAG----C--CT---T---G-CGCATTGATGCACGCACGACAGCGACTTCTCATTGAATGGATAATATTTGAAATCCGGGCTTGTGGTATGTTGTTCCA--CTCTTGAACAAG---CGC-----TTG-ACGAAGTAC----TTGAACGTT----GATTTCAATAATTTTATTGCGAA-ATTG-AA------AGAACA----TAC--CATAGAAACAAA-ATCTGAATATCAAAATACAGATAAACCAAT-TCTAA-----ACGAAA--T-----ATAC----A-AA-CAATAAAAGTGT-----------------TGCG---T--TT-T---T-----GTGAATTTAGGTA----ACGGGGGTTGTATGTTTCAAATCAATAAAAAGA-AGTG----AT--AATCG----------C--AATAGA-T-TTTGATGAAAATTTCCA-GGAAAGATA-----GAAAGATGTT-A------TATTATCAAATAAAAT-A-AATTTNAAACGA
finalCons : TCGATTTTT-TTGA-A-ATTT--ATTTTATTTGATAATATAACA------TCTTTCTACCTTTCCTGGAA------ATTT-TCATC-AAAATCT--AT---TG----------CGATTATCAC-TTCTTT-----------TT-AT--TGATTT-GAAAC-ATACAA-CCCCC-GT----TACCTAAATT--CAC-AAAAT---CAGTATCTTGTATAGCCTCCT------T---G-CGCATTGATGCACGCACGACAGCGACTTCTCATTGAATGGATAATATTTGAAATCCGGGCTTGTGGTATGTTGTTCCA--CTCTTGAACAAG---CGC-----TTG-ACGAAGTAC----TTGAACGTT----GATTTCAATAATTTTATTGCGAA-ATTG-AA------AGAACA----TAC--CATAGAAACAAA-ATCTGAATATCAAAATACAGATAAACCAAT-TCTAA-----ACGAAA--T-----ATAC----A-AA-CAATAAAAGTGT-----------------TGCG---T--TT-T---T-----GTGAATTTAGGTA----ACGGGGGTTGTATGTTTCAAATCAATAAAAAGA-AGTG----AT--AATCG----------C--AATAGA-T-TTTGATGAAAATTTCCA-GGAAAGATA-----GAAAGATGTT-A------TATTATCAAATAAAAT-A-AATTTNAAACGA
8 sequences could not be aligned to this reference sequence:
Unaligned ( gi|27 ): CCCAATCTGATGACCATACACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTTT
Unaligned ( gi|28 ): ATTAGGTGTTTATATAGAATATTAGCCAAATTAAACTAAAAGATAGCCATCCTTAAAAGAATATC
Unaligned ( gi|29 ): AAAGAACTTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTGTATGT
Unaligned ( gi|31 ): ATACACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
Unaligned ( gi|32 ): AAGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGT
Unaligned ( gi|33 ): TGAAAGACTAGAAACATTACCCTCAGATAAACACAATAAAACATCAAGTTCTTTATTG
Unaligned ( gi|34 ): ACACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
Unaligned ( gi|36 ): AAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
Alignments
lowQualScore : 11111111111 111 111111 1111111 1111 33333333 22222222222222222 111 11111 1111111111
lowQualScore : 2 2 2 22 555555 555555 0 1 1 22 666 7777777777 3 33333333333 1 22 1 3 2 4444 22 2 444 2 1 000 99999 3 000000 7777 0 3 6 0000000 2 8888 55 44 44 88888 1 22222222 6666666 2 00000000000000000 555 33 2 444 44444 5555 2 4444 33 0000000000 33 2 2 2 0 66666 2 777777 0 222 1
lowQualScore : . . . .. ...... ...... . . . .. ... .......... . ........... . .. . . . .... .. . ... . . ... ..... . ...... .... . . . ....... . .... .. .. .. ..... . ........ ....... . ................. ... .. . ... ..... .... . .... .. .......... .. . . . . ..... . ...... . ... .
lowQualScore : 1 1 1 88 222222 555555 4 9 8 44 111 6666666666 5 33333333333 7 33 8 5 0 2222 99 1 444 4 0 000 11111 6 111111 1111 5 3 7 9999999 5 8888 00 11 77 33333 2 00000000 4444444 9 00000000000000000 000 99 5 444 77777 3333 2 7777 11 3333333333 22 4 4 5 4 22222 5 222222 2 999 0
consensus : TCGATTTTT-TTGA-A-ATTT--ATTTTATTTGATAATATAACA------TCTTTCTACCTTTCCTGGAA------ATTT-TCATC-AAAATCT--AT---TG----------CGATTATCAC-TTCTTT-----------TT-AT--TGATTT-GAAAC-ATACAACCCCC-GT----TACCTAAATT--CAC-AAAAT---CAGTATCTTGTATAG-CCTCCTTGCGCATTGATGCACGCACGACAGCGACTTCTCATTGAATGGATAATATTTGAAATCCGGGCTTGTGGTATGTTGTTCCACTCTTGAACAAG---CGC-----TTG-ACGAAGTAC----TTGAACGTT----GATTTCAATAATTTTATTGCGAA-ATTG-AA------AGAACA----TAC--CATAGAAACAAA-ATCTGAATATCAAAATACAGATAAACCAAT-TCTAA-----ACGAAA--T-----ATAC----A-AA-CAATAAAAGTGT-----------------TGCG---T--TT-T---T-----GTGAATTTAGGTA----ACGGGGGTTGTATGTTTCAAATCAATAAAAAGA-AGTG----AT--AATCG----------C--AATAGA-T-TTTGATGAAAATTTCCA-GGAAAGATA-----GAAAGATGTT-A------TATTATCAAATAAAAT-A-AATTTNAAACGA
Reference ( family-3390 ) : TCGATTTTT-TTGA-A-ATTT--ATTTTATTTGATAATATAACA------TCTTTCTACCTTTCCTGGAA------ATTT-TCATC-AAAATCT--AT---TG----------CGATTATCAC-TTCTTT-----------TT-AT--TGATTT-GAAAC-ATACAACCCCC-GT----TACCTAAATT--CAC-AAAAT---CAGTATCTTGTATAG-CCTCCTTGCGCATTGATGCACGCACGACAGCGACTTCTCATTGAATGGATAATATTTGAAATCCGGGCTTGTGGTATGTTGTTCCACTCTTGAACAAG---CGC-----TTG-ACGAAGTAC----TTGAACGTT----GATTTCAATAATTTTATTGCGAA-ATTG-AA------AGAACA----TAC--CATAGAAACAAA-ATCTGAATATCAAAATACAGATAAACCAAT-TCTAA-----ACGAAA--T-----ATAC----A-AA-CAATAAAAGTGT-----------------TGCG---T--TT-T---T-----GTGAATTTAGGTA----ACGGGGGTTGTATGTTTCAAATCAATAAAAAGA-AGTG----AT--AATCG----------C--AATAGA-T-TTTGATGAAAATTTCCA-GGAAAGATA-----GAAAGATGTT-A------TATTATCAAATAAAAT-A-AATTTNAAACGA
gi|1 : TTGATGTTT-TTGA-A-ATTT--ATTTTATTTGATGATAAAGCA------TCTTTCTTCCTTTCCTGGAA------ATTT-TCTTCCAAAATTT--AT---TG----------CGATTTTCAT-TTCTTT-----------TT-AT--TGATTTTGAAAC-ATAAAATCCCN-NN----NNNNNNNNNN--NNN-NNNNN---NNNNNNNNNNNNNNN-NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTCTTGAATAAGG--TGCCCATTTTT-ACGA---------TT---CAGT----GATTTCAATAATTTTATTGCAAA-ATTATAC------AAAACT----AAC--CATAGAAACAAA-ATCTGAATATCAAAATACAGATAAACCAAT-ACTTA-----ACAAAA--TT----ATAC----A-AA-CAATAGAAGTGT-----------------TGCA---T--TT-T---TTT---GTGAACTAAGTTA----ATGGGGGTTGTAAGTTTTAAATCAACAGAAAGA-AGTG----AT--AATCA----------C--AATAGA-T-TTTAATGAAAGTTTCCA-GGAAAGATA------AAAGATTCT-A------TTTTATTGAAT-AAAT-A-AATTT
gi|10 : tnnnnnnnnnnaaacattaccctcagataaacacaataaaacatcaagttctttaAATTTAACG------TTTTCCT---TTTCCTAGAAGAAAAAAT----CATA-AAAATCT--AC---TG----------CAAATATCGC-TTCTTT-----------G--AT--TACTTA-GAAAC-ATACAAACCCCAGT----TACCTAAATT--CAC-AAAAT---CAGTATCTTGTATAAACCTCCTTGCGCATTGATGTGCGCACGACGGCGA----------------TATTTTTTACAATCCGACCTTGTGGTATGTTGTTCCGCTTTTGACTAAG---CGC-----TTG-CCAAAGTACGTACTTGAACGTT----AATTTCAAAAACTGTATTGTAAA------------------------TAT--CATAGAAACAAA-ATCAGAATATCAAAATGCAGATAAACCAAT-TC-AA-----ACGAAAT-T-----ATAC----A-AA-CAAT--AAGTGTTTTTTATGATTTTTTTGTGTG---T--TT-T---TATTTCGTTTATTTAAATT----ACGGAGATTGTGTGTTTCAAAT-----AAAAAA-AGTG----AT--TAACG----------C--TATAGA-TATTTAATG-ATATTTCAA-ATAAATTTA-----AAAAGATGTC-A------TATAATCAAAT-AAAT-A-GATTTAAAc
gi|11 : TCGATTTAT-ATGA-A-ATTG--ATGGTATTTGATAATATTTAA------TCTTTCTACCTTTC-------------------ATC-AAAATCT--AT---TG----------AAATTATCAC-TTCTTT-----------GT-AT--TGATTT-TAAAC-ATACAACCTCC-AT----TATCTAAATT--AAC-AAAAT---CAGTACCTTATACAG-CCT---TGTGCATTGATGCATGCATGACAGCAACTTCTCAGTGAATAGATACTATTTGAAATTCGGGCTTGTGGTATTTCGTTCCACTCTTGAACAAG---TGC-----TTG-GCAAAGTAC----TTGAACACT----AATTTCAATAATTTTAATGCAA
gi|12 : actaagaaataagcacagagaatcaattagtcatttttttggtattcaaatctaatgaagaaatacacctgaccaaaaaacttttaaaaacgtaacactccgacaaacagcaattaaacatctttaTCTTT-----------TT-ATCTTTCCTT-GAAATTGT-CA--CCTT-GT----TGTC-AAATTGTCAC-AAAAT---CATTATCTTGTATAG-CATCCTGACAAATTGATGCACACACAACATTTACTTCTCATTGAATGGTTAATATTTGAAATCCAGACTTGTGGTATGTTGTTGCACTCTTTAACTATATCCAC-----TTTCACG--GT------TTGG----T----GATTTCATTAATTTTATTACAAA-ATTG-AA------AGAAAA----TAC--CAAAGAAACAAT-ATCTGAATATCAAAACACAGATAAACAAAT-TCTAA-----ACGAAA--TTGATAATAC----A-AA-CAATAAAAGTGT-----------------TGCA---T--TT-T---T-----GTGAATTTAGGTA----ATGGGGGTTGTATGTTTCAAAATAATAAAAAGA-AGTG----AT--AATCG----------C--AACAGA-T-GTTGATGAAAATTTCCA-GGAAATGTAAAAACGAAAGATTTT-A------TACTATCAAATAAAAT-A-AATCTAAAAgtgtatttaagaatcagagtctcatttcccacaaataaaagcttcgcaatattta
gi|13 : aaatttatatatgtatttaTTGATTGTT-CTGA-A-ATTT--ATTTTATTTGAAAAAAAAACA------TCTTTCTACTTCTCCTGGAA------ATTT-TCATC-AAAATCTGTAT---AG----------CGATTATTAC---ATTT-----------TT-AT--TGATTT-GAAAC-ACACAACCCCC-GT----TACCTAAATT--CAC-AAAAAAAACAGTATTATGTATAG-CCTCTTTGTGCATTGATGCATGCACGACAGCGACTTCACATTGAATAAATAATATCTGAAATCCGGGCTTGTGGTATGTCGTTCCACTCTTTAATTAG---CGT-----TTG-ACGAAATAT----TTGAACGTC----GATTTCAATAATTTTATTGCGAA-ATTGTAC------AAAACA----
gi|13 : taCGAAA--TT----GTAC----A-AAACAATAAAAGTGT-----------------TGCG---T--TT-TTTTT-----GTGAATTTAGGTA----ACGGGGGTTATTTG-----AAT-AGTAGATAGATATTGTTTTATGAAAT-G----------A--AATAAA-T-TTTAAataaaagtgttgcgttttttttgtgaatttaggtaacgggggttatttgaatagtagatagatattgttttatgaaatgaaataaattttaaaaaca
gi|14 : tattgattgttctgaaatttattttatttgaaaaaaaaacatctttctacttctcctggaaattttcatcaaaatctgtatagcgattattacatttttattgatttgaaacacacaacccccgttacctaaattcacaaaaaaaacagtattatgtatagcctctttgtgcattgatgcatgcacgacagcgacttcacattgaataaataatatctgaaatccgggcttgtggtatgtcgttccactctttaattagcgtttgacgaaatatttgaacgtcgatttcaataattttattgCGATTCTT-TT---A-ATTTTCCTTTTATTTGATGATATAACA------T------A--TTCCCTGGAA------ATTT-TCATC-CAAATCT--AT---TG----------CAGTTTTGAC-TTCTTT-----------TT-GT--TGATTT-AAACT-ATACAAATCAC-GT----TACCTAAATT--CAC-AAAAT---CAGTATCTTGTATAG-CCACCTTGCGAGTTGATGCACGaaaca
gi|14 : ATTTTT-TTAA-A-CTTT--CTTTTATTTGATAATATAACA------TCCTTTTACTTTTCGTGCAA------ATTT-TCATC-AATATCT--TT---TA----------CGATTAACGC-TTCTTT-----------TT-AT--TGA-TT-GAAAC-ATACAGCCATC-G-----TGCATCAACT--CGC-AAatggctgtatgtttcaatcaataaaaagaagcgttaatcgtaaaagatattgatgaaaatttgcacgaaaagtaaaaggatgttatattatcaaataaaagaaagtttaaaaaaatattgataaagaactcaatgtcttatttatcgccgttt
gi|15 : cgattcttttaattttccttttatttgatgatataacatattccctggaaattttcatccaaatctattgcagttttgacttctttttgttgatttaaactatacaaatcacgttacctaaattcacaaaatcagtatcttgtatagccaccTCAATATTC-TTAA-A-ATTA--ACTTTATTTGATAATATAACA------TCTTTCTACCTTTCCTGCAA------AATG-TCATC-AAACTCT--AT---TC----------TGACTATCAC-TTCTTT-----------TT-GT--AGATTT-GAAAC-ATACAGCCCAT-GT----CACCT-TATT--CAC-AAAAT---CACTATCTTGTATAG-TCTCCTTGCTCACTGATGCCCACACAACAACAAattgataaagaactcaatgtcttatttatcgccgttt
gi|15 : AC----ACAA-CAACAAA---GT-----------------TACA---A---------------GTGAATTTAGGTATCAAACGGGGGTTGTATGATTCAAATCAATAAAAATA-GATG----AT--Aagttacaagtgaatttaggtatcaaacgggggttgtatgattcaaatcaataaaaatagatgatactgaacagtctactgaagagcaaactttc
gi|15 : tcaatattcttaaaattaactttatttgataatataacatctttctacctttcctgcaaaatgtcatcaaactctattctgactatcacttctttttgtagatttgaaacatacagcccatgtcaccttattcacaaaatcactatcttgtatagtctccttgctcactgatgcccTATCAT-CTATTT-----------TT-AT--TGATTT-GAATC-ATACAACCCCC-GTTTGATACCTAAATT--CAC-ctgaacagtctactgaagagcaaactttc
gi|16 : tcaatattcttaaaattaactttatttgataatataacatctttctacctttcctgcaaaatgtcatcaaactctattctgactatcacttctttttgtagatttgaaacatacagcccatgtcaccttattcacaaaatcactatcttgtatagtctccttgctcactgatgcccacacaacaacaaagttacaaATTTTATTGCAAA-ATTG-AA------AGAAAA----AAAAACATAAAAACAAA-ATTTGAATATCAAAATACATATAAACCCAT-TCTAA-----ACAAAAG-T-----ATAA----A-AA-CAAAAATAGTGT-----------------TACG---T--TT-T---T-----GT-AATTTAGGTA----GCGAGAGTTGTATGTTTCAAATCAATAAAAAGA-TGTA----AT--AATTG----------C--AATAGT-A-TTTAATG-AAATTTCCATAGAAAGAAA-----GATAGATGTT-A------TAGTATCAAGTGAAAT-A-AATTTCAAActgaacagtctactgaagagcaaactttc
gi|17 : actGTTTTATGAATCAAATCAATAAAAAGA-AGTG----AT--AATCGTCATAGATCGC--AATTGA-T-TTTGAAGAAAATTTACA-GACATGGTT-----AAAAGATGTT-A------CTTTATGAAATACAAT-A-atatt
gi|17 : catttttaaaaaataaaTCGATTTTTATT------TTT--AATTTATTTGATAATAAAAAA------ATTTTCTATAGTTTTTGTAA------AGTT-TCATC-AATATC------------------------TATCAC-TTCTTT-----------TTAAT--TTTTTT-GAAAC-ATACAACCCCC-GT----TACCattggtaacgggggttgtatgtttcaaaaaaattaaaaagaagtgatagatattgatgaaactttacaaaaactatagaaaatttttttattatcaaataaattaaaaataaaaatcga
gi|18 : catttttaaaaaataaatattgtatttcataaagtaacatcttttaaccatgtctgtaaattttcttcaaaatcaattgcgatctatgacgattatcacttctttttattgatttgattcataaaacatt----GATTTCAATAATTCTATTGCAAA-AACG-AA------ATAAAA----TAC--CATAG-AACAGACATCTTAATATCAAAGTACAGATAAACCAATAACTAA-----AC-AGA--T-----TTAT-----------AT---AGTGT-------------------CG---T--TT-G---G-----GGGATTTTAAGTA----ACGGGGGATGTATTGTTCAAATCAATAAAAAGA-ATTG----AT--AACCG----------CATAATAA----TTTGATAAATATTTC------AAG--A-----AAAAG--GTTAA------CATTATGAAATAAAAT-A-AATTTTGA
gi|19 : CGATTTTT-TTAACA-AAAT--ATTT-ATTTCATAAAATAACA------TCTTTCAACCATTTCTGTTA------ATTTGTTATC-AAAATCT--AT---TG----------CAATTATCAC-TTCTTT-----------TC-AT--TTATTT-CAAAC-AAACAACCCCC-GT----TACCTAAATT--CACAAAAAT---CAGTATTTTGTATAG-CTACCTTGCGCATTGATGCACGCGCGACAGCGtaagtcaataaag
gi|19 : AAC-GTACAACCCCA-AT----TACCTAAATT--CAC-Agatgtatatgtgaatttaggtaattggggttgtacgttgcttttcttaaat
gi|2 : cgatttttttaacaaaatatttatttcataaaataacatctttcaaccatttctgttaatttgttatcaaaatctattgcaattatcacttcttttcatttatttcaaacaaacaacccccgttacctaaattcacaaaaatcagtattttgtatagctaccttgcgcattgatgcacgcgcgacagcggatgtataGATTTAT-TTGA-A-ATTC--GTTTTATTTGGTAATATAACA------TCTTTCTACCTTTCATGAAA------ATTT-TCATC-GAAATCT--ATAATTG----------TGATTATCTC-GTCTTT-----------TT-AT--TGTGTT-GAAAC-ATACTACCCCC-TT----TACCTAAATT--CAC-AAAAC---CAATAGCTTGTATAG-CCTCCTTACGCATTGATGCACGCACGACAGCGACTTATCATTGAATGGATAATATTTGAAATCAGGCTTTGCGGTATGTTGTTCTACAAGTGAACAGG---CGC-----TTG-ACGAAGGAC----TTGAACGTT----GATTTCACTAATTGTATTTGGAA-ATTG-AT------AGAACATAGTTAC--CATAGAAACAAA-TTCTGAATATTTAAATACAGATAGGTCAAT-GCTAA-----ACAAAA--------GTA-----A-AA-TTCTAAAAGTGT-----------------TGCGTTTT--TT-T---T-----GTGAATTTAGGAA----ACGGGGGTTGTATGTTTCAAATCAATAAACAGA-AATG----AT--AGTCG----------C--AATAGA-T-CTTGATGAACAATTCCA-GGGAAGAAA-----GAAA-----C-A------TATTTTTAAA-AAAAT---GGTATGAAACGgcttttcttaaat
gi|20 : CGATTTTT-TTTA-ACATTT--ACTTTATTTGAAAATATAACA------TCTTTCTACTTTTCCTGGAA------AGTT-TCCAC-ACAATCT--AT---TG----------CCAGCATCAC-G-ATTT-----------TT-AT--TGATTT-GAAAC-ATACAACCACT-GT----TACCTAAATT--CAT-AAAAT---CAGTAACTTGTATAG-CATCCTTGTGCATTGGTGCACCCACGACAGCGAATTCTCATcgatgatttattgctgtttatctgcttttctaaagtatgtcggtg
gi|21 : ATAAACCAAT-TCTAAGTTTTACAAAAAAT-----ATACTTGTG-AA-CAATAAAAGTGT-----------------TGCGATTT--TT-T---T-----GTCAGTTTAGATA----ATGGGGGTTGTATATTTCAATTCGATAAAAACA--GTG----TT--CATTG----------C--AATAGA-T-TTTGATGAAACTTTCCA-GATATAGTA-----GAATGATATT-A------TATTATCAAATAAAAT-A-AATTTTAAA
gi|22 : TCGATAATT-TTGG-A-ATTT--ATTTTATTTGAAAATATAACA------TCTGTCTAACTTTCCTGGAA------AATT-TCATC-AAAATCT--GT---TG----------CGATTATCAC-CTCTTT-----------TT-AT--TGaa
gi|23 : TTGATTTTT-TTGA-A-ATTT--ATTTTATTTGATTATATAACAGTTACATCTTTCTACTATTCCTGGAA------ATTT-TCATT-AAAATCT--AG---TG----------TGATTATCGC-TTCTTT-----------TT-AT--TGATT----AACTATATAATCtacagtccgtaatgtttctatgctgtttatctgagttatatgtttctaaagtagta
gi|24 : aT--ATTGTATTTTATTAAGTAACA------TCTTTTAACCATGTCTGTAA------ATTT-GCTTC-AAAATCA--AT---TGCGATCTATGACGATTATCAC-TTCTTTCGGTGAA----TC-AT--TGAT
gi|25 : taaaaaaaaTTGTATGTTTCAATTCAATAAAAAGA-AGCA----AT--ATTCA----------C--AATAAA-A-TTTGATAAAACTTCTCA-GAAAAAATA-----GAAAGATATT-T------TATAATAAAATAAAAT-A-AACTTCAAAgtaa
gi|26 : tATC-CAAATCT--AT---TG----------CGATTATCGC-TTCTTT-----------TA-AT--TGGTTT-GAAAC-ATACAGTCCTA-GT----GACCTAAATT--CAT-AAAAT---CAGTATATTGTATattatt
gi|3 : GATTTAT-TTGA-A-ATTC--GTTTTATTTGGTAATATAACA------TCTTTCTACCTTTCATGAAA------ATTT-TCATC-GAAATCT--ATAATTG----------TGATTATCTC-GTCTTT-----------TT-AT--TGTGTT-GAAAC-ATACTACCCCC-TT----TACCTAAATT--CAC-AAAAC---CAATAGCTTGTATAG-CCTCCTTACGCATTGATGCACGCACGACAGCGACTTATCATTGAATGGATAATATTTGAAATCAGGCTTTGCGGTATGTTGTTCTACAAGTGAACAGG---CGC-----TTG-ACGAAGGAC----TTGAACGTT----GATTTCACTAATTGTATTTGGAA-ATTG-AT------AGAACATAGTTAC--CATAGAAACAAA-TTCTGAATATTTAAATACAGATAGGTCAAT-GCTAA-----ACAAAA--------GTA-----A-AA-TTCTAAAAGTGT-----------------TGCGTTTT--TT-T---T-----GTGAATTTAGGAA----ACGGGGGTTGTATGTTTCAAATCAATAAACAGA-AATG----AT--AGTCG----------C--AATAGA-T-CTTGATGAACAATTCCA-GGGAAGAAA-----GAAA-----C-A------TATTTTTAAA-AAAAT---GGTATGAAACGtgagatacacgg
gi|30 : TGATGATATAATA------TCTTTCTACCTTTCCTGGAT------ATTC-TTATC-AGATTAT--AT---TG----------TGATTAcgatgatttattgctgtttatctgcttttctaaagtatgtcggt
gi|35 : TCGATTTCT-TTGA-A-ATTT--ATTTTATTTGATAATATTACA------TCTGTCTACCTT
gi|4 : ta-TTGA-A-ATTT--ATTTTATTTGAGAATATAGCA------TCTTCCTACCTTTCCGGGAA------AGTT-TCATC-AAAATTG--GT---TG----------CGATTATTAT-TTCTTTATTACTACTTTTT-AT--TGATTT-GAAAC-A-----------------------------CAC-AAAAT---CATTATCTT--ATAG-CCTCCTTGTGCATCGATGCACGCACGGTAGCGACTTCTCATTGAATCAACACTATTTGAAATCCGGGCTTGTTTTAAGTTGTTCCGCTCTTTAACAAG---CGT-----TTG-ACGAAATAT----TTGAACGTT----GATTTCAATAATTTTCCTGCGAA-ATTG-AA------ATAACA----TAC--CACTGAATCAAA-ATCTGAATATCAAAATACAGATAAACCAAT-TCTAA-----ACAAAAT-T-----ATAC----A-AA-CAATAACAGTGT-----------------TGCA---T--TTAT---TG----GTGAATTTATGTT----ACGAGTGCTGTATGTTTCAAATCAATAAAAAGT-AGTA----AT--CATTG----------C--AATAGG-T-TTTGACGAAACTTTTCA-GAGATGGTA-----GAAAGATATT-A------TATTATCAAAGAAAATGA-AATTTAAAAC
gi|5 : TTTTT-TTAA-A-ATTC--ATTTTATTTGATTAAATATCA------TCTTTCTATCATTCCTGGAT------AGTT-TCACC-AAAATCT--AA---TG----------CGATTATCAC-TTCTTG-----------TT-AT--TGGTTT-GAAAC-ATACAACCCTT-GT----GACCTAG--T--CAT-AAAAT---CAGTATCTTGAATAG-CCTCCTTGTGCACTGATGCATGCATGACAGCAACTTCTCACTGAATGGATATTATTTGAAATCTGGGCGTGTGGTATGTTATTCCATTCTTGAACAAG---CAC-----TTA-ACAAAGTAC----TTGAACGTTCCCAGGTGGCAGTTGGCGTA-TGTAAACAT---AATTTTTCAGAAAA----TAC--CATAGAAACAAA-TTCTGAATATCAAACTACGGATAAACCAAT-TCTTA-----ACGAAAT-T-----ATAC----A-AA-CAATAAAAGTGT-----------------TACA---TTGTT-T---T-----GTGAATTTAGGTA----AAGTGGGTTTTATGTTTCAAATCAATAAAAAGA-TGTG----AT--AATCG----------C--AATATA-T-TTTGATGAAACTTTCCA-GGAAAGGTA-----GGAAGATGTT-ATAATAGTATTATCAAAAAAAAatgataatgaactcaatcttttattgcagtttaccggatggttgcgtttcta
gi|6 : gattTCGATTTAT-TTGA-A-ATTT--ATTTTATTTAATAATATAACA------TTTTGTTACCTTTCCTGTAA------AATT-TCATC-AAAATCT--AT---TG----------CGATCATCAC-TTTTTT-----------GT-AT--TGATTT-GAAAC-ATACAACCCGC-GT----CAGCTAATTT--CAC-AAAAT---CAGTATCTTTTATAG-CCT---TGCACTTTGATGCACGCACGACAGCGACTTCTCATTGAATGGATAATATTTGAAATCCTGGCTTG--------------ACTCTTGAACAAG---CGT-----TTG-GCGAAGTGT----TTGGACGTT----GATTTATACAATTTTATTGCGAG-ATTG-AA------AGAACA----TAC--CATATAAACAAA-TTCTGAATAATTAAATACAGATAAACAAAT-GCTAA-----ACGGAA--T-----ATAC----T-AG-CAATAAAATTGT-----------------TGCG---T--TT-A---T-----GTGAATTTAAGTT----AAGGGGGTTGTATGTTTCAAATCAATAAAAAGA-AGTG----AT--AATCG----------C--AATGGA-T-TTTGATGAAACTTACCA-GAACATATA-----GAAAGATGTG-A------TATTATCAAATACAAT-ATACTTTTAAATGA
gi|7 : ATCT--AT---AG----------CGATTACCAC-TTCTTT-----------TT-AT--TGATTT-GAATT-ATACAAGCCC--AT----TACCTAACTT--CAC-ACAGT---CAGTATCTTGTATAG-TCTTCTTGCGCATTGATACACGCATGACAGCAACTCCTCGTTAATTGGTTGATATATGGAATCCGGGCGCGTGGTATTTTGTTCCACTCTTCAACAAG---CGG-----TTA-ACG----------------GTT-------TTCAGTAAAATTATTGCTAA-ATTG-AA------AGAAAAAC--TAT--CATGGAAAGAAT-ATCTGAATATTAAAATACAGATAAATCAAC-TCTAA-----ATGAAA--TT----ATAC----A-AA-CAATAAAAGTGT-----------------TTCG---T--TT-T---TT----GTGATTTTAGGTT----ATGGGGATTGAATGTTTCAAATCAATAAAAATA-AATG----AT--AATCA----------C--AACATATT-TTTAATGGGAAATTCCA-GTAAAGATA-----GAAA-ATGTA-A------TATTACTAAATCAAAT-A-AATATAAAA
gi|8 : tttaatcgatatcttaaccttcattttatttaataatatcacgcTTTTT-TTG-----TTT--GTTTT-TTTGATAATATAACA------TTG----ACATTTTCTGGAA------ATTT-TCATC-AAAATAT--AT---TG----------CTATACTCACTTTTTTT-----------TT-AT--TAATTT-GAAAC-aaaatc
gi|8 : acctccttacgtaggtgcatgcatgtaacatcctggtatcccgttacgtaggtacatgtcggtaacatcctggtatcccgttacgtaggtacatgtcggtaatatcctggtatttccttacataggtgtcgtatgtctttataagtagctgccttcaaagacctgttcaatcctcacatacaccgaacgactttaaaaacgatattctcagagaaacagcaataaaactttaagatctttatcgttttgttgttAA-CCACCTTGCGCATTGATGCACGcaccttgcgcattgatgcacgggggtcgtatgtttaaaattaataaaaagaggtgataatcacaatagattctgatgaaaatttccaggaatgatagagagatgatatattatccaataaaatacattttaaataaat
gi|8 : acctccttacgtaggtgcatgcatgtaacatcctggtatcccgttacgtaggtacatgtcggtaacatcctggtatcccgttacgtaggtacatgtcggtaatatcctggtatttccttacataggtgtcgtatgtctttataagtagctgccttcaaagacctgttcaatcctcacatacaccgaacgactttaaaaacgatattctcagagaaacagcaataaaactttaagatctttatcgttttgttgtttttttttgtttgtttttttgataatataacattgacattttctggaaattttcatcaaaatatattgctatactcactttttttttattaatttga-T---T-----GCGCATTGATGCA-----CGGGGGTCGTATGTTTAAAATTAATAAAAAGA-GGTG----AT--AATCA----------C--AATAGA-T-TCTGATGAAAATTTCCA-GGAATGATA-----GAGAGATGAT-A------TATTATCCAATAAAAT-A-CATTTTAAAggggtcgtatgtttaaaattaataaaaagaggtgataatcacaatagattctgatgaaaatttccaggaatgatagagagatgatatattatccaataaaatacattttaaataaat
gi|9 : acctccttacgtaggtgcatgcatgtaacatcctggtatcccgttacgtaggtacatgtcggtaacatcctggtatcccgttacgtaggtacatgtcggtaatatcctggtatttccttacataggtgtcgtatgtctttataagtagctgccttcaaagacctgttcaatcctcacatacaccgaacgactttaaaaacgatattctcagagaaacagcaataaaactttaagatctttatcgttttgttgtttttttttgtttgtttttttgataatataacattgacattttctggaaattttcatcaaaatatattgctatactcactttttttttattaatttgaaaccaccTTTTT-TTG-----TTT--GTTTT-TTTGATAATATAACA------TTG----ACATTTTCTGGAA------ATTT-TCATC-AAAATAT--AT---TG----------CTATACTCACTTTTTTT-----------TT-AT--TAATTT-GAAAC-taaat
gi|9 : acctccttacgtaggtgcatgcatgtaacatcctggtatcccgttacgtaggtacatgtcggtaacatcctggtatcccgttacgtaggtacatgtcggtaatatcctggtatttccttacataggtgtcgtatgtctttataagtagctgccttcaaagacctgttcaatcctcacatacaccgaacgactttaaaaacgatattctcagagaaacagcaataaaactttaagatctttatcgttttgttgttAA-CCACCTTGCGCATTGATGCACGcaccttgcgcattgatgcacgggggtcgtatgtttaaaattaataaaaagaggtgataatcacaatagattctgatgaaaatttccaggaatgatagagagatgatatattatccaataaaatacattttaaataaat
gi|9 : acctccttacgtaggtgcatgcatgtaacatcctggtatcccgttacgtaggtacatgtcggtaacatcctggtatcccgttacgtaggtacatgtcggtaatatcctggtatttccttacataggtgtcgtatgtctttataagtagctgccttcaaagacctgttcaatcctcacatacaccgaacgactttaaaaacgatattctcagagaaacagcaataaaactttaagatctttatcgttttgttgtttttttttgtttgtttttttgataatataacattgacattttctggaaattttcatcaaaatatattgctatactcactttttttttattaatttga-T---T-----GCGCATTGATGCA-----CGGGGGTCGTATGTTTAAAATTAATAAAAAGA-GGTG----AT--AATCA----------C--AATAGA-T-TCTGATGAAAATTTCCA-GGAATGATA-----GAGAGATGAT-A------TATTATCCAATAAAAT-A-CATTTTAAAggggtcgtatgtttaaaattaataaaaagaggtgataatcacaatagattctgatgaaaatttccaggaatgatagagagatgatatattatccaataaaatacattttaaataaat
8 sequences could not be aligned to this reference sequence:
Unaligned ( gi|27 ): CCCAATCTGATGACCATACACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTTT
Unaligned ( gi|28 ): ATTAGGTGTTTATATAGAATATTAGCCAAATTAAACTAAAAGATAGCCATCCTTAAAAGAATATC
Unaligned ( gi|29 ): AAAGAACTTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTGTATGT
Unaligned ( gi|31 ): ATACACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
Unaligned ( gi|32 ): AAGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGT
Unaligned ( gi|33 ): TGAAAGACTAGAAACATTACCCTCAGATAAACACAATAAAACATCAAGTTCTTTATTG
Unaligned ( gi|34 ): ACACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
Unaligned ( gi|36 ): AAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN