lowQualScore : 111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 2 1111 11 111 444444444444 11 111111 1111 333333333333333333333 3333333333333333333333333333333333 1 111 2222222222 1 444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444 11 1 2222 111 666666666666666666666 1 1 11 222222 1111 2222 5555555555 2 111 222222
lowQualScore : 6 0 99 7777 55 0 22 1 3 33 6 6666 5 111 555555555555 2 66 2 00 00 111111 6666 666666666666666666666 2 7777777777777777777777777777777777 1 33 8888 3 8 1 777 666 3 777 4444444444 0 999 2 000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 88 1 5 0 999 1 3 6666 5 0 3 000 444444444444444444444 99 2 1 6 9 6 6 3 9 3 00 6 22 666666 3333 7 4 1 0 1 3 6 1 7 3333 666 3333 2 7777777777 2 2 0 111 2 4 999999 3
lowQualScore : . . .. .... .. . .. . . .. . .... . ... ............ . .. . .. .. ...... .... ..................... . .................................. . .. .... . . . ... ... . ... .......... . ... . ........................................................................................................................ .. . . . ... . . .... . . . ... ..................... .. . . . . . . . . . .. . .. ...... .... . . . . . . . . . .... ... .... . .......... . . . ... . . ...... .
lowQualScore : 7 0 77 4444 55 1 77 6 3 99 1 1111 0 888 666666666666 9 88 9 55 99 777777 8888 111111111111111111111 9 8888888888888888888888888888888888 4 99 2222 3 2 0 777 444 2 000 1111111111 0 666 2 888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888 44 1 0 7 777 7 0 7777 1 9 7 000 222222222222222222222 22 7 0 7 0 3 7 5 0 7 77 7 66 222222 6666 0 0 0 7 0 7 7 0 3 0000 000 5555 5 5555555555 5 5 0 000 5 0 000000 0
consensus : AAGTAAGT-AAGTAAATCGTTTTATTNAA--GTGACACGT-GCATTGACAAA-TCAATAAAAAGCA--TATAAA----CAA---TA----A--G-G--A-A--TGAAGC-ACCCGGCCCG-ATGGG-C---CTATAA---GTCACTATCGACAATACAAAG-TA-----T--CA--------TATTT-AAAACA-----T-GAT-A---TAA-CAGTTATG---G---CGATATTAAATTCAAAT--AAAT-ATACAAA-ATGGTTATATT---ATA---TATAAATGTG---TTTT--ACAAAANNAAT-CTGA--ATCAT-T--TGAT-TTAT-----CTATTTATA-TATCTAA------AATTATTAT--T-AGTAAA-TG-------AAT-----------TT-CT-GTA-------------AACCGA--G-T--CTTCGTTTTAGGAACGCTTTGGTTAAAAACTTGGCAACTTTCCTTTGATCACTAAGTATGATGTG---TT---TC-AA------T--NT--CT--GTACAATCAAGAGTT-AAATAANCTNTG-TTATNAATATTTACACGAAATA-NAT-CACTCCTT---NTATCATCATAGGATGAATAAAA-TGCAGTTCGTTTTCAACGGAGCTTGTATCACANAATATGCAAAATCTTTGAATTGGGTTCTCGCGAACATGNCNATCCTGAGAANAATTATGAAATTTNCNGCAGCGAGATNNNGCNAGAGTNGAACGTTCACTCTTGTTAAGTGTCATNTGGACATACTCTTTAGTAATAA
Reference ( gi|1 ) : AAGTAAGT-AAG-AAATTGTTTTACTTTA--GTGACACGT-TCATTGACAAA-TCAATAAAAAGCA--TATACA----CGA---TA----A----G--A-A--TGAAGC-ACCCGATCCG-CTGGA-C---CTATAC---GTCACTATCGACAATACAAAG-AC-----T--CA--------TATTT-AAAACA-----T-AAT-A---TAATCAGTTATG---T---CGATATTAAATTGAAAT--AAAT-ATGCAAA-ATAGTTATACT---ATA---TATAAATGTG---TTTT--ACAAAAGAAAT-TTGA--ATCAT-T--TGAT-TTAT-----CTATTTATA-TATCTAA----CCAATTATTAT--T-AATAAA-TG-------AAT-----------TT-CT-GTA-------------AGCCGA--G-T--CTTAGTTTCAGGGACGCTTTGGCTAAAAACTTGGCAACAATCCTTTGGTCACTAAGTATGATACG---TT---TCCAA------T--AT--CT--GTTCAATCAAGAGTT-AAATAAACTGTG-TTATGAATATCTACACGAAATA-AAT-CACTTCTT---TTATCATCATAGAATGAATAAAAATGCAATTCATTTTCAACGGAGCTTATATCACAGAATCTACAAAATCTTTGAATTGGATTTTCGTGAACATGTCAATCCTGAGAAGAA----GAA---TGCCGCAG-GAGATTTTGCGAGAGTTGAACGTTCACTCTTGTTAAGTGTCATTTGGACATACTCTTTAGTAATAA
gi|3 : AAGTAAGT-AAGTAAATC-TTTTATTAAA--GTGACTTGT-GCATTAACAAA-TCAATAAAAAGCA--TAAAAA----CAA---TAAATGA----G--A-A--TGAAGC-ACCCGGCCCG-ATGGG-C---CTATAA---GTCACTATCGACAATACAAAGTACATGTAT--CATAAAAAATTATTT-AAAACA-----TGAGT-AGACTAA-CA-TAATA---TAAACGATATCAAATTCAAAT--GAAT-ATACAAA-ATGGTTAAACCATAATA---TATAAATGTG---TTTTTAACAAA--TAATACTGA--ATAA--A--TGA----AT-----GTAGTTATG--------------AGTTATT-------GTAAGCTA-------AAT-----------TT-CT---------------------------T--CTTTGT---AGGAACGCTTTGGTTAAAAACTTGGCAAATTTCCTTTGATCATT-AGTATGATATGAAATT---TC-------------T--TT--GTACAATCAAGAATT-AAATAAGCTTGG-TTATTAATAT-------AAATATAATATATTTCTTCCACTATCATCATAGAATG
gi|16 : ccttttctaagaaggctaaccattctccagctccgattgcctatgtcgtgtaagtaagtaAGTAAGT-GCGTAGATCGTTTATTTTTT--GTGACAAGT-ACATTGACAAA-TCAATAGAAAGCA--TATAAA----CAA---TA----A----ATTA-AGTTGGAGC-ACCTGGCCCGACTGG------CTATA------AAGTGTCG-----ATAAAG-A----------A--------TAC----AAAT---------AT-A---TAAT-GGCTATGCTAT---TAATATT-ATTTGAAAT--A
gi|9 : taatTAAGTGAAG-AAAT-GTTTCATTAAA--GTGGCATGT-GCATTGACAAA-GCATCAGAAAGAA--TATAAA----CAAC--TA----ATGG-A--A-A--CGAAGC-ATCCGACCGG-ATGAA-G---ATTTAA---GTCACTACCGACAATACAAAG-TA-----T--CA--------TATTT------------T-AA--A---T--TC-----------------CATTAA------AT--AAAC-AT----A-ATGGCTATAAT---ATA---TGTAAAGGTG---TTTT--AGAAAACTAATATTGATTATTAT-T--TTAT-T
gi|2 : aAAGT-AAG-AAATTGTTTTACTTTA--GTGACACGT-TCATTGACAAA-TCAATAAAAAGCA--TATACA----CGA---TA----A----G--A-A--TGAAGC-ACCCGATCCG-CTGGA-C---CTATAC---GTCACTATCGACAATACAAAG-AC-----T--CA--------TATTT-AAAACA-----T-AAT-A---TAATCAGTTATG---T---CGATATTAAATTGAAAT--AAAT-ATGCAAA-ATAGTTATACT---ATA---TATAAATGTG---TTTT--ACAAAAGAAAT-TTGA--ATCAT-T--TGAT-TTAT-----CTATTTATA-TATCTAA----CCAATTATTAT--T-AATAAA-TG-------AAT-----------TT-CT-GTA-------------AGCCGA--G-T--CTTAGTTTCAGGGACGCTTTGGCTAAAAACTTGGCAACAATCCTTTGGTCACTAAGTATGATACG---TT---TCCAA------T--AT--CT--GTTCAATCAAGAGTT-AAATAAACTGTG-TTATGAATATCTACACGAAATA-AAT-CACTTCTT---TTATCATCATAGAATGAATAAAAATGCAATTCATTTTCAACGGAGCTTATATCACAGAATCTACAAAATCTTTGAATTGGATTTTCGTGAACATGTCAATCCTGAGAAGAA----GAA---TGCCGCAG-GAGATTTTGCGAGAGTTGAACGTTCACTCTTGTTAAGTGTCATTTGGACATACTCTTTAGTAATAAaagttaacaaataatattaaataatcgtatacaactaggtatgaattattgtat
gi|5 : AAGC-AAG-TAAATATTTTACTGAA--ATGATATGT-ACATTGTCAAA-TCAATAAAATGCA--CATACAAAACCAA---T----------G--ACA--CGAACA-ACCCGACCCA-TTGGG-C---CTATAA---GTCACTATCGACAATACAACG-TA-----T--CG--------TTTTT-AAAACA-----T-GAT-A----------TTAAG---G---CGATATAAAATTCAAAT--TAAT-AAATAAA-ATTCTTATATTAA-ATA---TATAAATGTG---TTTT-----AAAAAAAT-CTAT--ATCAT-TCATTAT-TTTT-----ATGTGTGTA-AGTTTAA------AAATAATAC--TGAATAAA-TG-------AATACAGTAAAGAATTATT-GTA-------------AACCTA--A-TTCCTTCTTTT--GTTAGGTTTTGATTA---------CAACGTTCCTTTGATCTCTAACTATGATAa
gi|19 : ccgtatatttgtagctggtgatatttattattccaataattagtcgtacagtgagaaatcaatcT-AAGTAAATCTTTTTA--TCAATGTGGCATGT-GCATTAACAAG-TCAATAAAA-GCA--CATAAA----CAA---TA----AATGAG--A-A--TGAAGC-ACCCGAT------GGG-C---CTATAA---TTCACTATCGGCAATAt
gi|6 : AAGTATTTTATTCAA--GTGACATGT-TCATTATCAAA-TCAATAGAGAGCATGTATACA----CTAAT-TG----A----A--A-A--TGAAGA-AACCAGCCTG-ACGGG-C---CTAAAT---GATATCACAGTCAATACACAG-ATA----TAACA---------ATTTGAAAGTA-----T--AT-A---TAA----TTACG---G---CGATATAAAATTCAAAT--AAAT-AATCAAA-ATGACTGAATT---ACA---TATGAAT-TA---T--------GAATTAAT-TT-A--ATTATAG--TGATATTATCGTTACTATTAATGTTATTT----------TTATTAT--T-ACGATA-TT-------AGTCTG--------TT-CTGGTACTAGTATATTGTTAACCGAGTG-T--CTTGTTTTAATAAAAACCTT---TATAAACTTAGCAACTTTCCTTT
gi|11 : TTTTA-TTGA--GTGACACAT-GGATTTCCAAA-TCAATATAAAGCA--TATAAA----CAA---TA----AATAAG--A-A--TGGATC-ACCCGGCCCA-ATGGG-C---CTATAA---TTCACTATCGACAATACAAAG-TA-----T--CA--------TATTT-AAAACA-----T-GAT-A---TTGACAGTTATG---G---TAAACTTAAGTTCAAGC--AAAGAAAACAAA-ATGGCTATATA---ATA---TAatgactttaccattatagtttctgctatcaataataccttagatatatcaaactttgtatgtcattgtagaaagaa
gi|8 : TTTATTAAA--GTGACACGT-GCA-------A-TCAATAAAAATCA--TATAAA----CAA---TA----AATGAG--A-A--TGTAGC-ACTCAGCCCG-ATGGG-C---CTATAA---GTCACTATCGATAACACAAAG-TA-----T--CA--------CATTT-AAAACA-----T-GCT-A---TAATCAGTTATG---G---CGATATCAAATTCAAAT--AAAT-ATACAAA-ATGGATATACTTTAACA---TATAAATATGTCTTTTT--AGTAAATAATA-CTGA--ATAAA-T--GAAT-GTA------------ATA--A--TGA------AATT-TTGT--T-AGC----TG-------AGT-----------TT-CT---------------------------T--CT---TTTTAGGAACGCTTTGGTTAAAAACTT--------TCCTTTGATCACTAAGTATGATGTG---TT---Ta
gi|4 : A--GTGACACGT-GCATTAATAAA-TCAATAAAAAGCA--TATAAA----CAA---TA----AATGAG--A-A--TGGCGCGAACGGGTGCG-TTTG--C---CAATAA---GTAACTTTCGACAATACAAAG-TA-----T--CA--------TATTT-AAAACA-----T-TAT-A---TAA-AAGTTATG---G---CGTTATTGAATTCAAAT--AAAT-ATACAAA-ATGGTTATACT---ATA---TAT--ATATA---TT-------------AT-GTG----CTGT-T--T--T-TTAA-----CAAATAATA----CTGA----TAAATGAATGTAGT-TATAAG-TT-------AA----------------T-GTG-------------AGCTGA--GTT--CTTCGTTGTAGGAACGCTTTATTTAAAAACTTGGCATGTTTCCTTTGATCACTATGCATGAAATG---TT---T--AAATT---T--CT--CT--GTACAATAATGAGTT-AAATAAGTTATG-TTATCAATATTTACAAGAAATA-AAT-CAC-GCCT---ATATCATCATAaa
gi|7 : gttatgcaatagttatgtatataaaacagtaattaatttaacataaaGACACGTGTAAT--ACAAAATCAATGTAAAGTA--TATGCG----------TA----A----C--A-AC-TGACAT-ACCCGGTTCG-ATGGGGCTGACTATAC---CTCACTATCGACAATATAAAG-TA-----T--TA--------TA-TT-AAAACA-----T-GATCA---CAATCA--------------AATATTAAAT----ATTAAAAC-ACACAAA-AT-GTC-CATT----TAAGTTATACATTTG---TTTT--ACA
gi|20 : ataACATGT-GTACTGACAAA-TCAATAAAAA-CA--TATAAA----CAA---TAAAGGA----G--A-A--TGAAAC-ACCtatcattcttatttttatcacgaagcaagttagcaaacagtactgaataagatcaaatagttatgctttattataagaagaattcatacgttttagaaatacttgttccaaatacttgacaactttcctttgagcatcaacaatgctggttttatatttgtcta
gi|12 : atagtctatgctcgttaactgattagtagatacatattttataaaagatAAAAGAAAACT--TATAAA----CAA---TA----ATAGAA--A-A--TGAAGT-ACTCGGCCTA-ATGGA-C---CTTTATTTAGTCACTTTCGACATAACAAA-------------A--------TATT----------------AT-A---TAA-CAGTTGTG---G---CGATATTGAATCCAAAT--AAAT-t
gi|15 : AAACA--TGTACA----TGGACCTACC--A----A--A-G--TAAAGC-ATAAAATTTG-C---------CTATAA---GTCACTATCGACAATACAACG-TA-----T--AT--------TATTT-AAAAAAAATATT-GAT-G---TAAACAATTGAG---G---CGATTATAAATTCAAAG--AGAT-TAGTAAA-ATTGTTACGTT---ATA---TATAAATGTG---TTTT--ACATAATTAAT-Tttattttacataattaatgttaattattattattatgcaagttaacaaatgatactgattaaa
gi|22 : -C---CTATAA---GTCACTATCGCCAATAAAAAT-A------T--CA--------TATTT-AAAACAAAAA-G-AAT-A---TAAACAGTTATG---G---CGATATTGAATTCAAAT--GAAT-ATACAAATATA
gi|18 : TATAA---GTCACTGTCGACAATACAACG-TA-----T--TG--------TATTT-AAAACA-----T-GA-------------------------CGATAATAAATTCAAGT--AAAT--TA-AAA-ATGGCTGTATT---ATA---TATAAATTTG---TTTT--
gi|10 : aatgtgcaCAT-T--TA---TTAT------TATTTTTACTATACAAGTTACCAAATATTA-----AGTGAA-TGTAGTCAGAAT-----------TA-TT-GTA-------------AACTAA--G-TTTCTTC-TTTTAGAAAAGTTTTTATTGAAAATCTGGCACCTTTCCTTTGATCACTGAGTATGATGTG---TTTAATTCAAAGTTTTT--CT--CT--CTACTATCAAGAGTT-AAATCATCTATG-CTATAAATATTTATATGATATA-TGC-CACTCC-----CTGCCATCATAGGAttatgtgtctaacaataatgtaatggttacatttttt
gi|13 : acaaacgtaaTCTTTTTATCTCTAGGTATGATGTG---TT---T---A------T--ATTGCTCAGTACAATAAAGTGTT-AAATAATCTATGCTTAT-AATATTTACATGAAGTA-TAT-CACTCCTA---ATACCATCATAGG-----------------TCGTTTTCAATAGAGCTGGTATCACATAATATGTAACGTCTTTAAa
gi|14 : ggcttactaaaatgacactttcTCCTTTGCTCACGGA-CATGATGTG---TT---TG-AA------TTTGT--CT--ACACACTTAAGTGTTCAAATTATTTCTG-CTATTAATAATTACACGAAATA-TAT-CACgata
gi|17 : taacaaatactactgaaaaattgactgtagtaaatatatatttaagagcttgtcctttttagtaaagcattaattgaacgttttATAAAACTGCAGTTCGTTTTCAATGGAGTTTGTATCACAAAATATGC-AAATATT----TTGAGTTCTTGCAAACATAATTATC----GAATAATTATAAAATTTTCAGCAACGAAATAGAGCTAGAGTAGA------ACTCTTGTTAAGTATCATGTG
1 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|21 ): AAGCAAATATTTTATTGTATTACCTGTGCAATAAATATAACACACAATATAACAAAAATAAATGAAAATTAGATAGCATCCAGCACAATGGGCACATAATTGTCAT
Alignments
lowQualScore : 11 5555555 111111111111111111111 1 11111 222222 99999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999 11111 3333333333 111 2 1 5555555555 2
lowQualScore : 3 88 44 1 2 3 555 2 2 7777777 2 33 2 2 2 444 444 444 5555 88888888 33 99999999 2 999999999999999999999 33 55 0 2 66666 555 999 44 3 3 7777 555 3 666 8 555 7 66 0 22222 99 111111 66666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666 33333 55 66 1 11 55 33 0 2 0 55 777 9999 2222222222 2 66 66 5 1 1 5 6 1 0 1 444 0 0 0 4 1 3 3 33 0 0 0 1 1 6 1 9999999999 1 1 3 333 1 1 7 1
lowQualScore : . .. .. . . . ... . . ....... . .. . . . ... ... ... .... ........ .. ........ . ..................... .. .. . . ..... ... ... .. . . .... ... . ... . ... . .. . ..... .. ...... ............................................................................................ ..... .. .. . .. .. .. . . . .. ... .... .......... . .. .. . . . . . . . . ... . . . . . . . .. . . . . . . . .......... . . . ... . . . .
lowQualScore : 2 99 66 0 6 1 000 9 9 8888888 9 99 9 9 5 444 444 444 3333 11111111 77 77777777 9 333333333333333333333 99 66 1 9 88888 444 666 22 1 3 1111 888 6 111 9 444 8 99 9 22222 00 222222 22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222 66666 55 33 6 55 00 44 5 2 1 00 888 4444 0000000000 8 99 99 7 0 0 7 6 7 4 0 555 8 0 0 2 0 0 2 55 7 7 7 0 0 7 0 7777777777 0 0 3 000 0 0 3 0
consensus : AAGTAAGTAAGTAAATCGTTT--TATTNAAGTGACACGTGCATTGACAAA-TCAATAAAAAGCATATA---AACAA-T-AA---A---GA-A--TGAAGC-ACCCGGCCCGA-TGGG-C---CTATA---AGTCACTATC---GAC----AATACAAA------G-TAT--CA--------TATTTAAAA-CA-----TGA-TA---TAA-CAGT--TAT-GGCGATATTAAAT-TCAAATAAAT-ATA-CAAAATGGCTA---TATT---ATA--T-ATA-A----ATG---TGT-TTT--ACAA-AANTAATACTGA--ATCAT-T--TGAT-TTATN-----TATTTATA-T-ATCTAA------AATT-ATTATT-AGTAAA-TG-------AAT-----------TT-CT-GTA-------------AGCCGA--G-T--CTT---CGTT--TTAG-GAACGCTTTGGTT--AAAAACTTGGCAACTTTCC--TTTGATCACTAAGTATGATGTG---T----TT-CAA------TNT--CT--GTACAATCAAGAGTT-AAATAANCTNTG-TTATNAATATTTACACGAAATANATCACTCCTTNTATCATCATAGAATGAATAAAAA-TGCAATTCGTTTTCAACGGAGCTTGTATCACAGAATNTGCAAAATCTTTGAATTGGATTTTCGCGAACATGTCAATCCTGAGAAGAA----GAA---TGCCGCAG-GAGATTTTGCGAGAGTTGAACGTTCACTCTTGTTAAGTGTCATTTGGACATACTCTTTAGTAATAA
Reference ( family-3103 ) : AAGTAAGTAAGTAAATCGTTT--TATTNAAGTGACACGTGCATTGACAAA-TCAATAAAAAGCATATA---AACAA-T-AA---G---GA-A--TGAAGC-ACCCGGCCCGA-TGGG-C---CTATA---AGTCACTATC---GAC----AATACAAA------G-TAT--CA--------TATTTAAAA-CA-----TGA-TA---TAA-CAGT--TAT-GGCGATATTAAAT-TCAAATAAAT-ATA-CAAAATGGTTA---TATT---ATA--T-ATA-A----ATG---TGT-TTT--ACAA-AANNAAT-CTGA--ATCAT-T--TGAT-TTATC-----TATTTATA-T-ATCTAA------AATT-ATTATT-AGTAAA-TG-------AAT-----------TT-CT-GTA-------------AACCGA--G-T--CTT---CGTT--TTAG-GAACGCTTTGGTT--AAAAACTTGGCAACTTTCC--TTTGATCACTAAGTATGATGTG---T----TT-CAA------TNT--CT--GTACAATCAAGAGTT-AAATAANCTNTG-TTATNAATATTTACACGAAATANATCACTCCTTNTATCATCATAGGATGAAT-AAAA-TGCAGTTCGTTTTCAACGGAGCTTGTATCACANAATATGCAAAATCTTTGAATTGGGTTCTCGCGAACATGNCNATCCTGAGAANAATTATGAAATTTNCNGCAGCGAGATNNNGCNAGAGTNGAACGTTCACTCTTGTTAAGTGTCATNTGGACATACTCTTTAGTAATAA
gi|1 : AAGTAAGTAAG-AAATTGTTT--TACTTTAGTGACACGTTCATTGACAAA-TCAATAAAAAGCATATA---CACGA-T-AA-------GA-A--TGAAGC-ACCCGATCCGC-TGGA-C---CTATA---CGTCACTATC---GAC----AATACAAA------G-ACT--CA--------TATTTAAAA-CA-----TAA-TA---TAATCAGT--TAT-GTCGATATTAAAT-TGAAATAAAT-ATG-CAAAATAGTTA---TACT---ATA--T-ATA-A----ATG---TGT-TTT--ACAA-AAGAAAT-TTGA--ATCAT-T--TGAT-TTATC-----TATTTATA-T-ATCTAACC----AATT-ATTATT-AATAAA-TG-------AAT-----------TT-CT-GTA-------------AGCCGA--G-T--CTT---AGTT--TCAG-GGACGCTTTGGCT--AAAAACTTGGCAACAATCC--TTTGGTCACTAAGTATGATACG---T----TTCCAA------TAT--CT--GTTCAATCAAGAGTT-AAATAAACTGTG-TTATGAATATCTACACGAAATAAATCACTTCTTTTATCATCATAGAATGAATAAAAA-TGCAATTCATTTTCAACGGAGCTTATATCACAGAATCTACAAAATCTTTGAATTGGATTTTCGTGAACATGTCAATCCTGAGAAGAA----GAA---TGCCGCAG-GAGATTTTGCGAGAGTTGAACGTTCACTCTTGTTAAGTGTCATTTGGACATACTCTTTAGTAATAA
gi|10 : CAT-T--TA---TTAT------TATTTTTACT-ATACAAGTTACCAAAT-ATTA---AGTGAA-TGTAGTCAGAAT-----------TA-TT-GTA-------------AACTAA--G-TTTCTT---C-TT--TTAG-AAAAGTTTTTATT--GAAAATCTGGCACCTTTCC--TTTGATCACTGAGTATGATGTG---TTTAATT-CAAAGTTTTTCT--CT--CTACTATCAAGAGTT-AAATCATCTATG-CTATAAATATTTATATGATATATGCCACTCC--CTGCCATCATAGGA
gi|11 : acaaacgtaaTTT--TATTGA-GTGACACATGGATTTCCAAA-TCAATATAAAGCATATA---AACAA-T-AA---ATAAGA-A--TGGATC-ACCCGGCCCAA-TGGG-C---CTATA---ATTCACTATC---GAC----AATACAAA------G-TAT--CA--------TATTTAAAA-CA-----TGA-TAT--TGA-CAGT--TAT-GGTAAACTTAAGT-TCAAGCAAAGAAAA-CAAAATGGCTA---TATA---ATA--T-Aa
gi|12 : AAAAGAAAACTTATA---AACAA-T-AATAGA---AA-A--TGAAGT-ACTCGGCCTAA-TGGA-C---CTTTATTTAGTCACTTTC---GAC----ATAACAAA--------------A--------TATT---------------A-TA---TAA-CAGT--TGT-GGCGATATTGAAT-CCAAATAAAT-------------TTA---TTTT---ACA--TAATT-A----ATG---Ta
gi|13 : T--AAAA---TGACA-CTTTCTCTTTTTATCTCTAGGTATGATGTG---T----TT-ATA------TTG--CTCAGTACAATAAAGTGTT-AAATAATCTATGCTTAT-AATATTTACATGAAGTATATCACTCCTAATACCATCATAGG------------------TCGTTTTCAATAGAGCTGGTATCACATAATATGTAACGTCTTTAAtaattattattattatgcaagttaacaaatgatactgattaaa
gi|14 : ggcttacAA------AATTGACTGT--AGTAAA-T---------AT-----------AT-AT-TTA-------------A---GA--G----CTTGTCCTTT--TTAG-TAAAGCATTAATT--GAACGTTT-------TTCC--TTTGCTCACGGA-CATGATGTG---T----TT-GAA------TTTGTCT--ACACACTTAAGTGTTCAAATTATTTCTG-CTATTAATAATTACACGAAATATATCACgata
gi|15 : taacaaatactactgaG-C---CTATA---AGTCACTATC---GAC----AATACAAC------G-TAT--AT--------TATTTAAAA-AAAATATTGA-TG---TAAACAAT--TGA-GGCGATTATAAAT-TCAAAGAGAT--TAGTAAAATTGTTA---CGTT---ATA--T-ATA-A----ATG---TGT-TTT--ACAT-AATTAAT-
gi|16 : aaacatgtacatggacctaccaaagtaaagcataaaatttAGTAAGTGCGTAGATCGTTT--ATTTTTTGTGACAAGTACATTGACAAA-TCAATAGAAAGCATATA---AACAA-T-AA---AT--TA-AGTTGGAGC-ACCTGGCCCGACTGG------CTATA---A---AGTGTC---GATAAAGAATACAAA--------TAT---A--------TAt
gi|17 : taatAT-AAAACTGCAGTTCGTTTTCAATGGAGTTTGTATCACAAAATATGC-AAATATT----TTGAGTTCTTGCAAACATAATTATC----GAATAATTATAAAATTTTCAGCAACGAAATAGAGCTAGAGTAGA------ACTCTTGTTAAGTATCATGTGatggctatgctattaatattatttgaaata
gi|18 : A-TGTG-C---ATATA---AGTCACTGTC---GAC----AATACAAC------G-TAT--TG--------TATTTAAAA-CA-----TGA----------------------CGATAATAAAT-TCAAGTAAAT--TA--AAAATGGCTG---TATT---ATA--T-ATA-A----ATT---TGT-TTT--ttttttaaataa
gi|19 : aTAAGTAAATCTTTT--TATCAATGTGGCATGTGCATTAACAAG-TCAAT-AAAAGCACATA---AACAA-T-AAATGA---GA-A--TGAAGC-A-----CCCGA-TGGG-C---CTATA---ATTCACTATC---GGC----AATAttatgtgtctaacaataatgtaatggttacatttttt
gi|2 : AAGTAAG-AAATTGTTT--TACTTTAGTGACACGTTCATTGACAAA-TCAATAAAAAGCATATA---CACGA-T-AA-------GA-A--TGAAGC-ACCCGATCCGC-TGGA-C---CTATA---CGTCACTATC---GAC----AATACAAA------G-ACT--CA--------TATTTAAAA-CA-----TAA-TA---TAATCAGT--TAT-GTCGATATTAAAT-TGAAATAAAT-ATG-CAAAATAGTTA---TACT---ATA--T-ATA-A----ATG---TGT-TTT--ACAA-AAGAAAT-TTGA--ATCAT-T--TGAT-TTATC-----TATTTATA-T-ATCTAACC----AATT-ATTATT-AATAAA-TG-------AAT-----------TT-CT-GTA-------------AGCCGA--G-T--CTT---AGTT--TCAG-GGACGCTTTGGCT--AAAAACTTGGCAACAATCC--TTTGGTCACTAAGTATGATACG---T----TTCCAA------TAT--CT--GTTCAATCAAGAGTT-AAATAAACTGTG-TTATGAATATCTACACGAAATAAATCACTTCTTTTATCATCATAGAATGAATAAAAA-TGCAATTCATTTTCAACGGAGCTTATATCACAGAATCTACAAAATCTTTGAATTGGATTTTCGTGAACATGTCAATCCTGAGAAGAA----GAA---TGCCGCAG-GAGATTTTGCGAGAGTTGAACGTTCACTCTTGTTAAGTGTCATTTGGACATACTCTTTAGTAATAA
gi|20 : AGTAGATACAT-ATTT--TATAAAAGATACATGTGTACTGACAAA-TCAATAAAAA-CATATA---AACAA-T-AAAGGA---GA-A--TGAAAC-ACCa
gi|22 : atagtctatgctcgttaactgatt-C---CTATA---AGTCACTATC---GCC----AATA-AAA------A-TAT--CA--------TATTTAAAA-CAAAAA-GAA-TA---TAAACAGT--TAT-GGCGATATTGAAT-TCAAATGAAT-ATA-CAAAt
gi|3 : AAGTAAGTAAGTAAATC-TTT--TATTAAAGTGACTTGTGCATTAACAAA-TCAATAAAAAGCATAAA---AACAA-T-AA---ATGAGA-A--TGAAGC-ACCCGGCCCGA-TGGG-C---CTATA---AGTCACTATC---GAC----AATACAAAGTACATG-TAT--CATAAAAAATTATTTAAAA-CA-----TGAGTAGACTAA-CA-TAATATAAACGATATCAAAT-TCAAATGAAT-ATA-CAAAATGGTTAAACCATA---ATA--T-ATA-A----ATG---TGT-TTTTAACAA-A--TAATACTGA--ATAA--A--TGA----ATG-----TAGTTAT---------G------AGTT-ATT-----GTAAGCTA-------AAT-----------TT-CT---------------------------T--CTT---TG-----TAG-GAACGCTTTGGTT--AAAAACTTGGCAAATTTCC--TTTGATCATT-AGTATGATATGAAAT----TT-C----------T--TT--GTACAATCAAGAATT-AAATAAGCTTGG-TTATTAATA--TAAATATAATATATTTCTTCCACTATCATCATAGAATGtata
gi|4 : ccttttctaagaaggctaaccattctccagctccgattgcctatgtcgtgtaagtaagtaAGTAATTAA----TTTAACATAAAAGTGACACGTGCATTAATAAA-TCAATAAAAAGCATATA---AACAA-T-AA---ATGAGA-A--TGGCGCGAACGGGTGCG--TTTG-C---CAATA---AGTAACTTTC---GAC----AATACAAA------G-TAT--CA--------TATTTAAAA-CA-----TTA-TA---TAA-AAGT--TAT-GGCGTTATTGAAT-TCAAATAAAT-ATA-CAAAATGGTTA---TACT---ATA--T-ATATATATTATGTGCTGT-TTT--TTAACAAATAATACTGA----TAA-A--TGA----ATG-----TAGTTATA---------------------------AGTTAA-T----------------------------GTG-------------AGCTGA--GTT--CTT---CGTT--GTAG-GAACGCTTTATTT--AAAAACTTGGCATGTTTCC--TTTGATCACTATGCATGAAATG---T----TT-AAATT----TCT--CT--GTACAATAATGAGTT-AAATAAGTTATG-TTATCAATATTTACAAGAAATAAATCACGCC-TATATCATCATA
gi|5 : gttatgcaatagttatgtatataaaacAAGCAAGTAAAT-ATTT--TACTGAAATGATATGTACATTGTCAAA-TCAATAAAATGCACATA---CAAAA-CCAA---T---GACA--CGAACA-ACCCGACCCAT-TGGG-C---CTATA---AGTCACTATC---GAC----AATACAAC------G-TAT--CG--------TTTTTAAAA-CA-----TGA-TA----------T--TAA-GGCGATATAAAAT-TCAAATTAAT-AAA-TAAAATTCTTA---TATTAA-ATA--T-ATA-A----ATG---TGT-TTT-----A-AAAAAAT-CTAT--ATCAT-TCATTAT-TTTTA-----TGTGTGTA-A-GTTTAA------AAAT-AATACTGAATAAA-TG-------AATACAGTAAAGAATTATT-GTA-------------AACCTA--A-TTCCTT---CTTTTGTTAG-----GTTTTGATT--A---------CAACGTTCC--TTTGATCTCTAACTATGATAT
gi|6 : ccgtatatttgtagctggtgatatttattattccaataattagtcgtacagtgagaaatcaatcAAGTA-----TTT--TATTCAAGTGACATGTTCATTATCAAA-TCAATAGAGAGCATGTA---TACAC-T-AATTGA---AA-A--TGAAGA-AACCAGCCTGA-CGGG-C---CTA-----AATGA-TATCACAGTC----AATACACA------GATATAACA---------ATTTGAAAGTA-----T-A-TA---TAA----T--TAC-GGCGATATAAAAT-TCAAATAAAT-AAT-CAAAATGACTG---AATT---ACA--T-ATG-A----AT----------T--ATGA-A-TTAAT-TT-A--ATTATAG--TGATATTATCGTTACTATTAATG-TTATTT----------TT-ATTATT-ACGATA-TT-------AGTCTG--------TT-CTGGTACTAGTATATTGTTAACCGAGTG-T--CTT----GTT--TTAATAAAAACCT---TT--ATAAACTTAGCAACTTTCC--TTT-ATGACT
gi|7 : GACACGTGTAAT-ACAAAATCAATGTAAAGTATATGCGTAACAA-C----------------TGACAT-ACCCGGTTCGA-TGGGGCTGACTATA---CCTCACTATC---GAC----AATATAAA------G-TAT--TA--------TA-TTAAAA-CA-----TG---A---TCA-CAAT--CA-----AATATTAAATATTA---AAAC-ACA-CAAAATGTCCA---T-TT---A-AGTT-ATA-C----ATT---TGT-TTT--ACAttaccattatagtttctgctatcaataataccttagatatatcaaactttgtatgtcattgtagaaagaa
gi|7 : ata---CGTT--TTAG-AAATACTT--GTTCCAAATACTTGACAACTTTCC--TTTGAGCATCAACAATGCTG-G---T----TT-T-A------TAT--TT--GTtatcattcttatttttatcacgaagcaagttagcaaacagtactgaataagatcaaatagttatgctttattataagaagaattcatacgttttagaaatacttgttccaaatacttgacaactttcctttgagcatcaacaatgctggttttatatttgtcta
gi|8 : atagacacgtgtaatacaaaatcaatgtaaagtatatgcgtaacaactgacatacccggttcgatggggctgactatacctcactatcgacaatataaagtattatattaaaacatgatcacaatcaaatattaaatattaaaacacacaaaatgtccatttaagttatacatttgttttacatatcattcttatttttatcacgaagcaagttagcaaacagtactgaataagatcaaatagttatgctttattataagaagaattcataTT--TATTAAAGTGACACGTGCA-------A-TCAATAAAAATCATATA---AACAA-T-AA---ATGAGA-A--TGTAGC-ACTCAGCCCGA-TGGG-C---CTATA---AGTCACTATC---GAT----AACACAAA------G-TAT--CA--------CATTTAAAA-CA-----TGC-TA---TAATCAGT--TAT-GGCGATATCAAAT-TCAAATAAAT-ATA-CAAAATGGATA---TACTTTAACA--T-ATA-A----ATA---TGTCTTT--TTAGTAAATAATACTGA--ATAAA-T--GAAT-GTA------------ATA---A--TGA------AATT--TTGTT-AGC----TG-------AGT-----------TT-CT---------------------------T--CT------TT--TTAG-GAACGCTTTGGTT--AAA--------AACTTTCC--TTTGATCACTAAGTATGATGTG---T----TT-cta
gi|9 : TAAGTGAAGAAAT-GTTT--CATTAAAGTGGCATGTGCATTGACAAA-GCATCAGAAAGAATATA---AACAACT-AATG-G---AA-A--CGAAGC-ATCCGACCGGA-TGAA-G---ATTTA---AGTCACTACC---GAC----AATACAAA------G-TAT--CA--------TATTT---------------------TAA-----------------ATTCCAT-T-AAATAAAC-AT-----AATGGCTA---TAAT---ATA--T-GTA-A----AGG---TGT-TTT--AGAA-AACTAATATTGATTATTAT-T--TTAT-Taa
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|21 ): AAGCAAATATTTTATTGTATTACCTGTGCAATAAATATAACACACAATATAACAAAAATAAATGAAAATTAGATAGCATCCAGCACAATGGGCACATAATTGTCAT
Alignments
lowQualScore : 11 4444444 111111111111111111111 1 22222 11 22222222 8888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888 11 3333333333 111 2222222222 1
lowQualScore : 3 88 44 1 2 3 555 2 7777777 33 2 33 2 2 2 444 444 444 5555 88888888 33 99999999 2 999999999999999999999 33 55 0 2 33 55555 2 555 0 555 999 44 3 7777 6666 999 44 8 44 0 66 2 22222 11 00000000 3 8888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888 11 55 66 1 11 55 33 0 2 0 55 777 9999 3333333333 2 66 66 5 1 1 5 6 1 0 1 444 0 3 0 0 1 3 33 0 6 9999999999 3 7
lowQualScore : . .. .. . . . ... . ....... .. . .. . . . ... ... ... .... ........ .. ........ . ..................... .. .. . . .. ..... . ... . ... ... .. . .... .... ... .. . .. . .. . ..... .. ........ . ........................................................................................... .. .. .. . .. .. .. . . . .. ... .... .......... . .. .. . . . . . . . . ... . . . . . . .. . . .......... . .
lowQualScore : 2 99 66 0 6 1 000 9 3333333 99 9 99 9 9 5 444 444 444 3333 11111111 77 77777777 9 333333333333333333333 99 66 1 9 99 99999 9 444 5 444 666 22 3 1111 8888 222 66 0 66 0 11 2 11111 88 44444444 1 3333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333 66 55 33 6 55 00 44 5 2 1 00 888 4444 1111111111 8 99 99 7 0 0 7 6 7 4 0 555 8 0 8 2 0 2 55 7 7 0000000000 3 3
consensus : AAGTAAGTAAGTAAATCGTTT--TATTNAAGTGACACGTGCATTGACAAA-TCAATAAAAAGCATATA---AACAA-TAA---AT--G--A-A--TGAAGC-ACCCGGCCCGA-TGGG-C---CTATA---AGTCACTATC---GAC----AATACAAA------G-TAT--CA--------TATTTAAAA-CA-----TGA-TA---TAA-CAGT--TAT-GGCGATATTAAAT-TCAAATAAA--T-A---TA-CAAAAT---GGCTA---TATT---ATA--TATA-A----ATG---TGT---TTT--ACAA-AANTAATACTGA--ATCAT-N--TGAT-TTAT-----N--TATTTATA-TATCTAA------AATT-ATTATT-AGTAAA-TG-------AAT-----------TT-CT-GTA-------------AGCCGA--G-T--CTTCGTT--TTAG-GAACGCTTTGGTT--AAAAACTTGGCAACTTTCC--TTTGATCACTAAGTATGATGTG---T----TTC-AA------TNT--CT--GTACAATCAAGAGTT-AAATAANCTNTG-TTATNAATATTTACACGAAATANATCACTCCTTNTATCATCATAGAATGAATAAAAATGCAATTCGTTTTCAACGGAGCTTGTATCACAGAATNTGCAAAATCTTTGAATTGGATTTTCGCGAACATGTCAATCCTGAGAAGAA----GAA---TGCCGCAG-GAGATTTTGCGAGAGTTGAACGTTCACTCTTGTTAAGTGTCATTTGGACATACTCTTTAGTAATAA
Reference ( family-3103 ) : AAGTAAGTAAGTAAATCGTTT--TATTNAAGTGACACGTGCATTGACAAA-TCAATAAAAAGCATATA---AACAA-TAA---A---G--A-A--TGAAGC-ACCCGGCCCGA-TGGG-C---CTATA---AGTCACTATC---GAC----AATACAAA------G-TAT--CA--------TATTTAAAA-CA-----TGA-TA---TAA-CAGT--TAT-GGCGATATTAAAT-TCAAATAAA--T-A---TA-CAAAAT---GGCTA---TATT---ATA--TATA-A----ATG---TGT---TTT--ACAA-AANTAATACTGA--ATCAT-T--TGAT-TTAT-----N--TATTTATA-TATCTAA------AATT-ATTATT-AGTAAA-TG-------AAT-----------TT-CT-GTA-------------AGCCGA--G-T--CTTCGTT--TTAG-GAACGCTTTGGTT--AAAAACTTGGCAACTTTCC--TTTGATCACTAAGTATGATGTG---T----TTC-AA------TNT--CT--GTACAATCAAGAGTT-AAATAANCTNTG-TTATNAATATTTACACGAAATANATCACTCCTTNTATCATCATAGAATGAATAAAAATGCAATTCGTTTTCAACGGAGCTTGTATCACAGAATNTGCAAAATCTTTGAATTGGATTTTCGCGAACATGTCAATCCTGAGAAGAA----GAA---TGCCGCAG-GAGATTTTGCGAGAGTTGAACGTTCACTCTTGTTAAGTGTCATTTGGACATACTCTTTAGTAATAA
gi|1 : AAGTAAGTAAG-AAATTGTTT--TACTTTAGTGACACGTTCATTGACAAA-TCAATAAAAAGCATATA---CACGA-TAA-------G--A-A--TGAAGC-ACCCGATCCGC-TGGA-C---CTATA---CGTCACTATC---GAC----AATACAAA------G-ACT--CA--------TATTTAAAA-CA-----TAA-TA---TAATCAGT--TAT-GTCGATATTAAAT-TGAAATAAA--T-A---TG-CAAAAT---AGTTA---TACT---ATA--TATA-A----ATG---TGT---TTT--ACAA-AAGAAAT-TTGA--ATCAT-T--TGAT-TTAT-----C--TATTTATA-TATCTAACC----AATT-ATTATT-AATAAA-TG-------AAT-----------TT-CT-GTA-------------AGCCGA--G-T--CTTAGTT--TCAG-GGACGCTTTGGCT--AAAAACTTGGCAACAATCC--TTTGGTCACTAAGTATGATACG---T----TTCCAA------TAT--CT--GTTCAATCAAGAGTT-AAATAAACTGTG-TTATGAATATCTACACGAAATAAATCACTTCTTTTATCATCATAGAATGAATAAAAATGCAATTCATTTTCAACGGAGCTTATATCACAGAATCTACAAAATCTTTGAATTGGATTTTCGTGAACATGTCAATCCTGAGAAGAA----GAA---TGCCGCAG-GAGATTTTGCGAGAGTTGAACGTTCACTCTTGTTAAGTGTCATTTGGACATACTCTTTAGTAATAA
gi|10 : AT-TTAT-----TATTATTTTTACTATACAAGTTACCAAAT-ATTA---AGTGAA-TGTAGTCAGAAT-----------TA-TT-GTA-------------AACTAA--G-TTTCTTC-TT--TTAG-AAAAGTTTTTATT--GAAAATCTGGCACCTTTCC--TTTGATCACTGAGTATGATGTG---TTTAATTC-AAAGTTTTTCT--CT--CTACTATCAAGAGTT-AAATCATCTATG-CTATAAATATTTATATGATATATGCCACTCC--CTGCCATCATAGGA
gi|11 : acaaacgtaacTTT--TATTGA-GTGACACATGGATTTCCAAA-TCAATATAAAGCATATA---AACAA-TAA---ATAAG--A-A--TGGATC-ACCCGGCCCAA-TGGG-C---CTATA---ATTCACTATC---GAC----AATACAAA------G-TAT--CA--------TATTTAAAA-CA-----TGA-TAT--TGA-CAGT--TAT-GGTAAACTTAAGT-TCAAGCAAA--GAA---AA-CAAAAT---GGCTA---TATA---ATA--TAa
gi|12 : AAAAGAAAACTTATA---AACAA-TAATAGA---A--A-A--TGAAGT-ACTCGGCCTAA-TGGA-C---CTTTATTTAGTCACTTTC---GAC----ATAACAAA--------------A--------TATT---------------A-TA---TAA-CAGT--TGT-GGCGATATTGAAT-CCAAATAAATTT-ATTTTA-CATAATTAATGTTA----ATT---AT---TATT-A----TTA---TGCAAGTTA--ACAA-A--TGATACTGA--a
gi|13 : T--AAAA---TGACA-CTTTCTCTTTTTATCTCTAGGTATGATGTG---T----TTA-TA------TTG--CTCAGTACAATAAAGTGTT-AAATAATCTATGCTTAT-AATATTTACATGAAGTATATCACTCCTAATACCATCATAGG-----------------TCGTTTTCAATAGAGCTGGTATCACATAATATGTAACGTCTTTAAttaaa
gi|14 : ggcttacAA------AATTGACTGT--AGTAAA-TA-------TAT-----------AT-TT-AAG-------------AGCTT---G-T--CCT--TT--TTAG-TAAAGCATTAATT--GAACGTTT-------TTCC--TTTGCTCACGGA-CATGATGTG---T----TTG-AA------TTTGTCT--ACACACTTAAGTGTTCAAATTATTTCTG-CTATTAATAATTACACGAAATATATCACgata
gi|15 : taacaaatactactgaG-C---CTATA---AGTCACTATC---GAC----AATACAAC------G-TAT--AT--------TATTTAAAA-AAAATATTGA-TG---TAAACAAT--TGA-GGCGATTATAAAT-TCAAAGAGA--T-----TAGTAAAAT---TGTTA---CGTT---ATA--TATA-A----ATG---TGT---TTT--ACAT-AATTAAT
gi|16 : aaacatgtacatggacctaccaaagtaaagcataaaatttAGTAAGTGCGTAGATCGTTT--ATTTTTTGTGACAAGTACATTGACAAA-TCAATAGAAAGCATATA---AACAA-TAA---AT--T--A-AGTTGGAGC-ACCTGGCCCGACTGG------CTATA---A---AGTGTC---GATAAAGAATACAAA--------TAT---A--------TAt
gi|17 : taatATAAAACTGCAGTTCGTTTTCAATGGAGTTTGTATCACAAAATATGC-AAATATT----TTGAGTTCTTGCAAACATAATTATC----GAATAATTATAAAATTTTCAGCAACGAAATAGAGCTAGAGTAGA------ACTCTTGTTAAGTATCATGTGatggctatgctattaatattatttgaaata
gi|18 : A-TGTG-C---ATATA---AGTCACTGTC---GAC----AATACAAC------G-TAT--TG--------TATTTAAAA-CA-----TGA----------------------CGATAATAAAT-TCAAGTAAA--T-----TA--AAAAT---GGCTG---TATT---ATA--TATA-A----ATT---TGT---TTT--ttttttaaataa
gi|19 : aTAAGTAAATCTTTT--TATCAATGTGGCATGTGCATTAACAAG-TCAAT-AAAAGCACATA---AACAA-TAAATGA---G--A-A--TGAAGC-A-----CCCGA-TGGG-C---CTATA---ATTCACTATC---GGC----AATAttatgtgtctaacaataatgtaatggttacatttttt
gi|2 : AAGTAAG-AAATTGTTT--TACTTTAGTGACACGTTCATTGACAAA-TCAATAAAAAGCATATA---CACGA-TAA-------G--A-A--TGAAGC-ACCCGATCCGC-TGGA-C---CTATA---CGTCACTATC---GAC----AATACAAA------G-ACT--CA--------TATTTAAAA-CA-----TAA-TA---TAATCAGT--TAT-GTCGATATTAAAT-TGAAATAAA--T-A---TG-CAAAAT---AGTTA---TACT---ATA--TATA-A----ATG---TGT---TTT--ACAA-AAGAAAT-TTGA--ATCAT-T--TGAT-TTAT-----C--TATTTATA-TATCTAACC----AATT-ATTATT-AATAAA-TG-------AAT-----------TT-CT-GTA-------------AGCCGA--G-T--CTTAGTT--TCAG-GGACGCTTTGGCT--AAAAACTTGGCAACAATCC--TTTGGTCACTAAGTATGATACG---T----TTCCAA------TAT--CT--GTTCAATCAAGAGTT-AAATAAACTGTG-TTATGAATATCTACACGAAATAAATCACTTCTTTTATCATCATAGAATGAATAAAAATGCAATTCATTTTCAACGGAGCTTATATCACAGAATCTACAAAATCTTTGAATTGGATTTTCGTGAACATGTCAATCCTGAGAAGAA----GAA---TGCCGCAG-GAGATTTTGCGAGAGTTGAACGTTCACTCTTGTTAAGTGTCATTTGGACATACTCTTTAGTAATAA
gi|20 : AGTAGATACAT-ATTT--TATAAAAGATACATGTGTACTGACAAA-TCAATAAAAA-CATATA---AACAA-TAAAGGA---G--A-A--TGAAAC-ACCa
gi|22 : atagtctatgctcgttaactgatt-C---CTATA---AGTCACTATC---GCC----AATA-AAA------A-TAT--CA--------TATTTAAAA-CAAAAA-GAA-TA---TAAACAGT--TAT-GGCGATATTGAAT-TCAAATGAA--T-A---TA-CAAAt
gi|3 : AAGTAAGTAAGTAAATC-TTT--TATTAAAGTGACTTGTGCATTAACAAA-TCAATAAAAAGCATAAA---AACAA-TAA---ATGAG--A-A--TGAAGC-ACCCGGCCCGA-TGGG-C---CTATA---AGTCACTATC---GAC----AATACAAAGTACATG-TAT--CATAAAAAATTATTTAAAA-CA-----TGAGTAGACTAA-CA-TAATATAAACGATATCAAAT-TCAAATGAA--T-A---TA-CAAAAT---GGTTAAACCATA---ATA--TATA-A----ATG---TGT---TTTTAACAA-A--TAATACTGA--ATAA--A--TGA----AT-----G--TAGTTAT--------G------AGTT-ATT-----GTAAGCTA-------AAT-----------TT-CT---------------------------T--CTTTG-----TAG-GAACGCTTTGGTT--AAAAACTTGGCAAATTTCC--TTTGATCATT-AGTATGATATGAAAT----TTC-----------T--TT--GTACAATCAAGAATT-AAATAAGCTTGG-TTATTAATA--TAAATATAATATATTTCTTCCACTATCATCATAGAATGtata
gi|4 : ccttttctaagaaggctaaccattctccagctccgattgcctatgtcgtgtaagtaagtaAGTAATTAA----TTTAACATAAAAGTGACACGTGCATTAATAAA-TCAATAAAAAGCATATA---AACAA-TAA---ATGAG--A-A--TGGCGCGAACGGGTGCG--TTTG-C---CAATA---AGTAACTTTC---GAC----AATACAAA------G-TAT--CA--------TATTTAAAA-CA-----TTA-TA---TAA-AAGT--TAT-GGCGTTATTGAAT-TCAAATAAA--T-A---TA-CAAAAT---GGTTA---TACT---ATA--TATATATATTATGTGCTGT---TTT--TTAACAAATAATACTGA----TAA-A--TGA----AT-----G--TAGTTATA--------------------------AGTTAA----------------------------T-GTG-------------AGCTGA--GTT--CTTCGTT--GTAG-GAACGCTTTATTT--AAAAACTTGGCATGTTTCC--TTTGATCACTATGCATGAAATG---T----TTA-AATT----TCT--CT--GTACAATAATGAGTT-AAATAAGTTATG-TTATCAATATTTACAAGAAATAAATCACGCC-TATATCATCATA
gi|5 : gttatgcaatagttatgtatataaaacAAGCAAGTAAAT-ATTT--TACTGAAATGATATGTACATTGTCAAA-TCAATAAAATGCACATA---CAAAA-CCA---AT--G--ACA--CGAACA-ACCCGACCCAT-TGGG-C---CTATA---AGTCACTATC---GAC----AATACAAC------G-TAT--CG--------TTTTTAAAA-CA-----TGA-TA----------T--TAA-GGCGATATAAAAT-TCAAATTAA--T-A---AA-TAAAAT---TCTTA---TATTAA-ATA--TATA-A----ATG---TGT---TTT--AAAA-AAAT----CTAT--ATCAT-TCATTAT-TTTT-----A--TGTGTGTA-AGTTTAA------AAAT-AATACTGAATAAA-TG-------AATACAGTAAAGAATTATT-GTA-------------AACCTA--A-TTCCTTCTTTTGTTAG-----GTTTTGATT--A---------CAACGTTCC--TTTGATCTCTAACTATGATAT
gi|6 : ccgtatatttgtagctggtgatatttattattccaataattagtcgtacagtgagaaatcaatcAAGTA-----TTT--TATTCAAGTGACATGTTCATTATCAAA-TCAATAGAGAGCATGTA---TACAC-TAATTGA---A--A-A--TGAAGA-AACCAGCCTGA-CGGG-C---CTA-----AATGA-TATCACAGTC----AATACACA------GATATAACA---------ATTTGAAAGTA-----T-A-TA---TAA----T--TAC-GGCGATATAAAAT-TCAAATAAA--T-A---AT-CAAAAT---GACTG---AATT---ACA--TATG-A----AT----TAT-----------G-AATTAAT--TTA--ATTATAG--TGATATTATCGTTAC--TATTAATGTTATTT----------TT-ATTATT-ACGATA-TT-------AGTCTG--------TT-CTGGTACTAGTATATTGTTAACCGAGTG-T--CTT-GTT--TTAATAAAAACCT---TT--ATAAACTTAGCAACTTTCC--TTT-ATGACT
gi|7 : GACACGTGTAAT-ACAAAATCAATGTAAAGTATATGCGTAACAA-C-----------------TGACAT-ACCCGGTTCGA-TGGGGCTGACTATA---CCTCACTATC---GAC----AATATAAA------G-TAT--TA--------TA-TTAAAA-CA-----TG---A---TCA-CAAT--CA-----AATATTAAATATTA---AAA--C-A---CA-CAAAAT---GTCCA---T-TT---A-AGTTATA-C----ATT---TGT---TTT--ACAttaccattatagtttctgctatcaataataccttagatatatcaaactttgtatgtcattgtagaaagaa
gi|7 : ataCGTT--TTAG-AAATACTT--GTTCCAAATACTTGACAACTTTCC--TTTGAGCATCAACAATGCTG-G---T----TTT--A------TAT--TT--GTtatcattcttatttttatcacgaagcaagttagcaaacagtactgaataagatcaaatagttatgctttattataagaagaattcatacgttttagaaatacttgttccaaatacttgacaactttcctttgagcatcaacaatgctggttttatatttgtcta
gi|8 : atagacacgtgtaatacaaaatcaatgtaaagtatatgcgtaacaactgacatacccggttcgatggggctgactatacctcactatcgacaatataaagtattatattaaaacatgatcacaatcaaatattaaatattaaaacacacaaaatgtccatttaagttatacatttgttttacatatcattcttatttttatcacgaagcaagttagcaaacagtactgaataagatcaaatagttatgctttattataagaagaattcataTT--TATTAAAGTGACACGTGCA-------A-TCAATAAAAATCATATA---AACAA-TAA---ATGAG--A-A--TGTAGC-ACTCAGCCCGA-TGGG-C---CTATA---AGTCACTATC---GAT----AACACAAA------G-TAT--CA--------CATTTAAAA-CA-----TGC-TA---TAATCAGT--TAT-GGCGATATCAAAT-TCAAATAAA--T-A---TA-CAAAAT---GGATA---TACTTTAACA--TATA-A----ATA---TGTC--TTT--TTAGTAAATAATACTGA--ATAA--A--TGA----AT-----G--TA---ATA--A--TGA------AATT--TTGTT-AGC----TG-------AGT-----------TT-CT---------------------------T--CT---TT--TTAG-GAACGCTTTGGTT--AAA--------AACTTTCC--TTTGATCACTAAGTATGATGTG---T----TTcta
gi|9 : TAAGTGAAGAAAT-GTTT--CATTAAAGTGGCATGTGCATTGACAAA-GCATCAGAAAGAATATA---AACAACTAA---T---GGAA-A--CGAAGC-ATCCGACCGGA-TGAA-G---ATTTA---AGTCACTACC---GAC----AATACAAA------G-TAT--CA--------TATTT---------------------TAA-----------------ATTCCAT-T-AAATAAA--C-A---T-----AAT---GGCTA---TAAT---ATA--TGTA-A----AGG---TGT---TTT--AGAA-AACTAATATTGATTATTAT-T--TTAT-Taa
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|21 ): AAGCAAATATTTTATTGTATTACCTGTGCAATAAATATAACACACAATATAACAAAAATAAATGAAAATTAGATAGCATCCAGCACAATGGGCACATAATTGTCAT
Alignments
lowQualScore : 1111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 22 1111111111111 111111111111111111111 1 11111 11 222222 0000000000000000000000000000000000000000000000000000000000000000000000000000000 11111111 3333333333 111 2222222222 1
lowQualScore : 3 11 44 1 0 3 2 2 33 9999999999999 33 2 2 2 2 444 444 33 444 5555 88888888 33 99999999 2 999999999999999999999 33 55 0 2 33 55555 2 555 0 555 999 44 3 7777 6666 999 44 8 99 0 66 2 99999 11 000000 3 1111111111111111111111111111111111111111111111111111111111111111111111111111111 0 44444444 99 55 66 1 11 55 33 0 2 0 55 777 9999 3333333333 2 66 66 5 1 1 5 5 3 1 1 000 77 1 3 0 0 1 3 33 0 6 9999999999 3 7
lowQualScore : . .. .. . . . . . .. ............. .. . . . . ... ... .. ... .... ........ .. ........ . ..................... .. .. . . .. ..... . ... . ... ... .. . .... .... ... .. . .. . .. . ..... .. ...... . ............................................................................... . ........ .. .. .. . .. .. .. . . . .. ... .... .......... . .. .. . . . . . . . . ... .. . . . . . . .. . . .......... . .
lowQualScore : 5 44 22 0 9 5 9 7 77 5555555555555 77 7 7 7 4 111 111 22 444 3333 11111111 77 77777777 9 333333333333333333333 99 66 1 9 99 99999 9 444 5 444 666 22 3 1111 8888 222 66 0 55 0 11 2 44444 88 444444 1 0000000000000000000000000000000000000000000000000000000000000000000000000000000 1 44444444 11 55 33 6 55 00 44 5 2 1 00 888 4444 1111111111 8 99 99 7 0 0 0 9 6 1 0 000 99 0 0 8 2 0 2 55 7 7 0000000000 3 3
consensus : AAGTAAGTAAGTAAAT-GTTT--TATTNAAGTGACACGTGCATTGACAAA-TCAATAAAAAGCA-TATAA--ACAATAAAT--G--A--A--T--GA-AGC-ACCCGGCCCGA-TGGG-C---CTATA---A--GTCACTATC---GAC----AATACAAA------G-TAT--CA--------TATTTAAAA-CA-----TGA-TA---TAA-CAGT--TAT-GGCGATATTAAAT-TCAAATAAA--T-A---TA-CAAAAT---GGCTA---TATT---ATA--TATA-A----ATG---TGT---TTT--ACAA-AANTAATACTGA--ATCAT--A-TGAT-TTATN-----TATTTATA-T-ATCTAA------AATT-ATTATT-AGTAAA-TG-------AAT-----------TT-CT-GTA-------------AGCCGA--G--T--CTTCGTT--TTAG-GAACGCTTTGGTT--AAAAACTTGGCAACTTTCC--TTTGATCACTAAGTATGATGTG---T----TTC-AA------TNT--CT--GTACAATCAAGAGTT-AAATAANCTNTG-TTATNAATATTTACACGAAATATATCACTCCTTNTA--TCATCATAGAATGAATAAAAATGCAATTCGTTTTCAACGGAGCTTGTATCACAGAATNTGCAAAATCTTTGAATTGGATTTTCGCGAACATGTCAATCCTGAGAAGAA----GAA---TGCCGCAG-GAGATTTTGCGAGAGTTGAACGTTCACTCTTGTTAAGTGTCATTTGGACATACTCTTTAGTAATAA
Reference ( family-3103 ) : AAGTAAGTAAGTAAATCGTTT--TATTNAAGTGACACGTGCATTGACAAA-TCAATAAAAAGCA-TATAA--ACAATAAAT--G--A--A--T--GA-AGC-ACCCGGCCCGA-TGGG-C---CTATA---A--GTCACTATC---GAC----AATACAAA------G-TAT--CA--------TATTTAAAA-CA-----TGA-TA---TAA-CAGT--TAT-GGCGATATTAAAT-TCAAATAAA--T-A---TA-CAAAAT---GGCTA---TATT---ATA--TATA-A----ATG---TGT---TTT--ACAA-AANTAATACTGA--ATCAT--N-TGAT-TTATN-----TATTTATA-T-ATCTAA------AATT-ATTATT-AGTAAA-TG-------AAT-----------TT-CT-GTA-------------AGCCGA--G--T--CTTCGTT--TTAG-GAACGCTTTGGTT--AAAAACTTGGCAACTTTCC--TTTGATCACTAAGTATGATGTG---T----TTC-AA------TNT--CT--GTACAATCAAGAGTT-AAATAANCTNTG-TTATNAATATTTACACGAAATANATCACTCCTTNTA--TCATCATAGAATGAATAAAAATGCAATTCGTTTTCAACGGAGCTTGTATCACAGAATNTGCAAAATCTTTGAATTGGATTTTCGCGAACATGTCAATCCTGAGAAGAA----GAA---TGCCGCAG-GAGATTTTGCGAGAGTTGAACGTTCACTCTTGTTAAGTGTCATTTGGACATACTCTTTAGTAATAA
gi|1 : AAGTAAGTAAG-AAATTGTTT--TACTTTAGTGACACGTTCATTGACAAA-TCAATAAAAAGCA-TATAC--ACGATAA----G--A--A--T--GA-AGC-ACCCGATCCGC-TGGA-C---CTATA---C--GTCACTATC---GAC----AATACAAA------G-ACT--CA--------TATTTAAAA-CA-----TAA-TA---TAATCAGT--TAT-GTCGATATTAAAT-TGAAATAAA--T-A---TG-CAAAAT---AGTTA---TACT---ATA--TATA-A----ATG---TGT---TTT--ACAA-AAGAAAT-TTGA--ATCAT--T-TGAT-TTATC-----TATTTATA-T-ATCTAACC----AATT-ATTATT-AATAAA-TG-------AAT-----------TT-CT-GTA-------------AGCCGA--G--T--CTTAGTT--TCAG-GGACGCTTTGGCT--AAAAACTTGGCAACAATCC--TTTGGTCACTAAGTATGATACG---T----TTCCAA------TAT--CT--GTTCAATCAAGAGTT-AAATAAACTGTG-TTATGAATATCTACACGAAATAAATCACTTCTTTTA--TCATCATAGAATGAATAAAAATGCAATTCATTTTCAACGGAGCTTATATCACAGAATCTACAAAATCTTTGAATTGGATTTTCGTGAACATGTCAATCCTGAGAAGAA----GAA---TGCCGCAG-GAGATTTTGCGAGAGTTGAACGTTCACTCTTGTTAAGTGTCATTTGGACATACTCTTTAGTAATAA
gi|10 : AT-TTATTAT---TATTTTTACT-ATACAAGTTACCAAAT-ATTA---AGTGAA-TGTAGTCAGAAT-----------TA-TT-GTA-------------AACTAA--G--TTTCTTC-TT--TTAG-AAAAGTTTTTATT--GAAAATCTGGCACCTTTCC--TTTGATCACTGAGTATGATGTG---TTTAATTC-AAAGTTTTTCT--CT--CTACTATCAAGAGTT-AAATCATCTATG-CTATAAATATTTATATGATATATGCCACTCC--CTG--CCATCATAGGA
gi|11 : acaaacgtaacTTT--TATTGA-GTGACACATGGATTTCCAAA-TCAATATAAAGCA-TATAA--ACAATAAATAAG--A--A--T--GG-ATC-ACCCGGCCCAA-TGGG-C---CTATA---A--TTCACTATC---GAC----AATACAAA------G-TAT--CA--------TATTTAAAA-CA-----TGA-TAT--TGA-CAGT--TAT-GGTAAACTTAAGT-TCAAGCAAA--GAA---AA-CAAAAT---GGCTA---TATA---ATA--TAa
gi|12 : AAAAGAAAACT-TATAA--ACAATAATA--G--A--AAAT--GA-AGT-ACTCGGCCTAA-TGGA-C---CTTTATTTA--GTCACTTTC---GAC----ATAACAAA--------------A--------TATT---------------A-TA---TAA-CAGT--TGT-GGCGATATTGAAT-CCAAATAAATTT-ATTTTA-CATAATTAATGTTA----ATT---AT---TATT-A----TTA---TGCAAGTTA--ACAA-A--TGATACTGA--a
gi|13 : T--AAAA---TGACA-CTTTCTCTTTTTATCTCTAGGTATGATGTG---T----TTA-TA------TTG--CTCAGTACAATAAAGTGTT-AAATAATCTATGCTTAT-AATATTTACATGAAGTATATCACTCCTAATA--CCATCATAGG-----------------TCGTTTTCAATAGAGCTGGTATCACATAATATGTAACGTCTTTAAttaaa
gi|14 : ggcttacAA------AATTGACTGT--AGTAAA-TA-------TAT-----------AT-TT-AAG-------------AGCTT---G--T--CCT--TT--TTAG-TAAAGCATTAATT--GAACGTTT-------TTCC--TTTGCTCACGGA-CATGATGTG---T----TTG-AA------TTTGTCT--ACACACTTAAGTGTTCAAATTATTTCTG-CTATTAATAATTACACGAAATATATCACgata
gi|15 : taacaaatactactgaG-C---CTATA---A--GTCACTATC---GAC----AATACAAC------G-TAT--AT--------TATTTAAAA-AAAATATTGA-TG---TAAACAAT--TGA-GGCGATTATAAAT-TCAAAGAGA--T-----TAGTAAAAT---TGTTA---CGTT---ATA--TATA-A----ATG---TGT---TTT--ACAT-AATTAAT
gi|16 : aaacatgtacatggacctaccaaagtaaagcataaaatttAGTAAGTGCGTAGATCGTTT--ATTTTTTGTGACAAGTACATTGACAAA-TCAATAGAAAGCA-TATAA--ACAATAAAT--T--A--AGTT--GG-AGC-ACCTGGCCCGACTGG------CTATA---A-----AGTGTC---GATAAAGAATACAAA--------TAT---A--------TAt
gi|17 : taatATAAAACTGCAGTTCGTTTTCAATGGAGTTTGTATCACAAAATATGC-AAATATT----TTGAGTTCTTGCAAACATAATTATC----GAATAATTATAAAATTTTCAGCAACGAAATAGAGCTAGAGTAGA------ACTCTTGTTAAGTATCATGTGatggctatgctattaatattatttgaaata
gi|18 : A-TGTG-C---ATATA---A--GTCACTGTC---GAC----AATACAAC------G-TAT--TG--------TATTTAAAA-CA-----TGA----------------------CGATAATAAAT-TCAAGTAAA--T-----TA--AAAAT---GGCTG---TATT---ATA--TATA-A----ATT---TGT---TTT--ttttttaaataa
gi|19 : aTAAGTAAATCTTTT--TATCAATGTGGCATGTGCATTAACAAG-TCAAT-AAAAGCA-CATAA--ACAATAAATGAG--A--A--T--GA-AGC-A-----CCCGA-TGGG-C---CTATA---A--TTCACTATC---GGC----AATAttatgtgtctaacaataatgtaatggttacatttttt
gi|2 : AAGTAAG-AAATTGTTT--TACTTTAGTGACACGTTCATTGACAAA-TCAATAAAAAGCA-TATAC--ACGATAA----G--A--A--T--GA-AGC-ACCCGATCCGC-TGGA-C---CTATA---C--GTCACTATC---GAC----AATACAAA------G-ACT--CA--------TATTTAAAA-CA-----TAA-TA---TAATCAGT--TAT-GTCGATATTAAAT-TGAAATAAA--T-A---TG-CAAAAT---AGTTA---TACT---ATA--TATA-A----ATG---TGT---TTT--ACAA-AAGAAAT-TTGA--ATCAT--T-TGAT-TTATC-----TATTTATA-T-ATCTAACC----AATT-ATTATT-AATAAA-TG-------AAT-----------TT-CT-GTA-------------AGCCGA--G--T--CTTAGTT--TCAG-GGACGCTTTGGCT--AAAAACTTGGCAACAATCC--TTTGGTCACTAAGTATGATACG---T----TTCCAA------TAT--CT--GTTCAATCAAGAGTT-AAATAAACTGTG-TTATGAATATCTACACGAAATAAATCACTTCTTTTA--TCATCATAGAATGAATAAAAATGCAATTCATTTTCAACGGAGCTTATATCACAGAATCTACAAAATCTTTGAATTGGATTTTCGTGAACATGTCAATCCTGAGAAGAA----GAA---TGCCGCAG-GAGATTTTGCGAGAGTTGAACGTTCACTCTTGTTAAGTGTCATTTGGACATACTCTTTAGTAATAA
gi|20 : AGTAGATACAT-ATTT--TATAAAAGATACATGTGTACTGACAAA-TCAATAAAAA-CA-TATAA--ACAATAAAGGAG--A--A--T--GA-AAC-ACCa
gi|21 : atagtctatgctcgttaactgattAAGCAAAT-ATTT--TATTGTATT-ACCTGTGCA---ATAAA-T--ATAACACACAATATAACAAAAATAAAT--GAAA--A--TTAGATAGC-ATCCAGCACAA-TGGG-C---ACATA---ATTGTCAt
gi|22 : -C---CTATA---A--GTCACTATC---GCC----AATA-AAA------A-TAT--CA--------TATTTAAAA-CAAAAA-GAA-TA---TAAACAGT--TAT-GGCGATATTGAAT-TCAAATGAA--T-A---TA-CAAAt
gi|3 : AAGTAAGTAAGTAAATC-TTT--TATTAAAGTGACTTGTGCATTAACAAA-TCAATAAAAAGCA-TAAAA--ACAATAAAT--G--AGAA--T--GA-AGC-ACCCGGCCCGA-TGGG-C---CTATA---A--GTCACTATC---GAC----AATACAAAGTACATG-TAT--CATAAAAAATTATTTAAAA-CA-----TGAGTAGACTAA-CA-TAATATAAACGATATCAAAT-TCAAATGAA--T-A---TA-CAAAAT---GGTTAAACCATA---ATA--TATA-A----ATG---TGT---TTTTAACAA-A--TAATACTGA--ATAA---A-TGA----ATG-----TAGTTAT---------G------AGTT-ATT-----GTAAGCTA-------AAT-----------TT-CT----------------------------T--CTTTG-----TAG-GAACGCTTTGGTT--AAAAACTTGGCAAATTTCC--TTTGATCATT-AGTATGATATGAAAT----TTC-----------T--TT--GTACAATCAAGAATT-AAATAAGCTTGG-TTATTAATA--TAAATATAATATATTTCTTCCACTA--TCATCATAGAATGtata
gi|4 : ccttttctaagaaggctaaccattctccagctccgattgcctatgtcgtgtaagtaagtaAGTAATTAA----TTTAACATAAAAGTGACACGTGCATTAATAAA-TCAATAAAAAGCA-TATAA--ACAATAAAT--G--AGAA--T--GG-CGCGAACGGGTGCG--TTTG-C---CAATA---A--GTAACTTTC---GAC----AATACAAA------G-TAT--CA--------TATTTAAAA-CA-----TTA-TA---TAA-AAGT--TAT-GGCGTTATTGAAT-TCAAATAAA--T-A---TA-CAAAAT---GGTTA---TACT---ATA--TATATATATTATGTGCTGT---TTT--TTAACAAATAATACTGA----TAA--A-TGA----ATG-----TAGTTATA---------------------------AGTTAA----------------------------T-GTG-------------AGCTGA--GT-T--CTTCGTT--GTAG-GAACGCTTTATTT--AAAAACTTGGCATGTTTCC--TTTGATCACTATGCATGAAATG---T----TTA-AATT----TCT--CT--GTACAATAATGAGTT-AAATAAGTTATG-TTATCAATATTTACAAGAAATAAATCACGCC-TATA--TCATCATA
gi|5 : gttatgcaatagttatgtatataaaacAAGCAAGTAAAT-ATTT--TACTGAAATGATATGTACATTGTCAAA-TCAATAAAATGCA-CATAC--AAAACCAAT--G--AC-A--C--GA-ACA-ACCCGACCCAT-TGGG-C---CTATA---A--GTCACTATC---GAC----AATACAAC------G-TAT--CG--------TTTTTAAAA-CA-----TGA-TA----------T--TAA-GGCGATATAAAAT-TCAAATTAA--T-A---AA-TAAAAT---TCTTA---TATTAA-ATA--TATA-A----ATG---TGT---TTT--AAAA-AAAT----CTAT--ATCATTCA-TTAT-TTTTA-----TGTGTGTA-A-GTTTAA------AAAT-AATACTGAATAAA-TG-------AATACAGTAAAGAATTATT-GTA-------------AACCTA--A--TTCCTTCTTTTGTTAG-----GTTTTGATT--A---------CAACGTTCC--TTTGATCTCTAACTATGATAT
gi|6 : ccgtatatttgtagctggtgatatttattattccaataattagtcgtacagtgagaaatcaatcAAGTA-----TTT--TATTCAAGTGACATGTTCATTATCAAA-TCAATAGAGAGCA-TGTAT--ACACTAATT--G--A--AAAT--GA-AGA-AACCAGCCTGA-CGGG-C---CTA-----A--ATGA-TATCACAGTC----AATACACA------GATATAACA---------ATTTGAAAGTA-----T-A-TA---TAA----T--TAC-GGCGATATAAAAT-TCAAATAAA--T-A---AT-CAAAAT---GACTG---AATT---ACA--TATG-A----AT------------T--ATGA-A-TTAAT--TTA--ATTAT--AGTGATATTATCGTTACTATTAATG-TTATTT----------TT-ATTATT-ACGATA-TT-------AGTCTG--------TT-CTGGTACTAGTATATTGTTAACCGAGTG--T--CTT-GTT--TTAATAAAAACCT---TT--ATAAACTTAGCAACTTTCC--TTT-ATGACT
gi|6 : ATAGTTTCTG-CTATCAATAAT-ACCTTAGATATATCAAACTTTGTATGTCATTGTAGAAAGAAttaccattatagtttctgctatcaataataccttagatatatcaaactttgtatgtcattgtagaaagaa
gi|7 : aagtattttattcaagtgacatgttcattatcaaatcaatagagagcatgtatacactaattgaaaatgaagaaaccagcctgacgggcctaaatgatatcacagtcaatacacagatataacaatttgaaagtatatataattacggcgatataaaattcaaataaataatcaaaatgactgaattacatatgaattatgaattaatttaattatagtgatattatcgttactattaatgttatttttattattacgatattagtctgttctggtactagtatattgttaaccgagtgtcttgttttaataaaaacctttataaacttagcaactttcctttatgactttaccattGACACGTGTAAT-ACAAAATCAATGTAAAGTA-TATGC--GTAACAACT--G--AC-A--T---------ACCCGGTTCGA-TGGGGCTGACTATA---C--CTCACTATC---GAC----AATATAAA------G-TAT--TA--------TA-TTAAAA-CA-----TG---A---TCA-CAAT--CA-----AATATTAAATATTA---AAA--C-A---CA-CAAAAT---GTCCA---T-TT---A-AGTTATA-C----ATT---TGT---TTT--ACA
gi|7 : ataCGTT--TTAG-AAATACTT--GTTCCAAATACTTGACAACTTTCC--TTTGAGCATCAACAATGCTG-G---T----TTT--A------TAT--TT--GTtatcattcttatttttatcacgaagcaagttagcaaacagtactgaataagatcaaatagttatgctttattataagaagaattcatacgttttagaaatacttgttccaaatacttgacaactttcctttgagcatcaacaatgctggttttatatttgtcta
gi|8 : atagacacgtgtaatacaaaatcaatgtaaagtatatgcgtaacaactgacatacccggttcgatggggctgactatacctcactatcgacaatataaagtattatattaaaacatgatcacaatcaaatattaaatattaaaacacacaaaatgtccatttaagttatacatttgttttacatatcattcttatttttatcacgaagcaagttagcaaacagtactgaataagatcaaatagttatgctttattataagaagaattcataTT--TATTAAAGTGACACGTGCA-------A-TCAATAAAAATCA-TATAA--ACAATAAAT--G--AGAA--T--GT-AGC-ACTCAGCCCGA-TGGG-C---CTATA---A--GTCACTATC---GAT----AACACAAA------G-TAT--CA--------CATTTAAAA-CA-----TGC-TA---TAATCAGT--TAT-GGCGATATCAAAT-TCAAATAAA--T-A---TA-CAAAAT---GGATA---TACTTTAACA--TATA-A----ATA---TGTC--TTT--TTAGTAAATAATACTGA--ATAA---A-TGA----ATG-----TA---ATA--------------------------------A-TG-------AAA-----------TT-TT-GTT-------------AGCTGA--GTTT--CTTCTTT--TTAG-GAACGCTTTGGTT--AAA--------AACTTTCC--TTTGATCACTAAGTATGATGTG---T----TTcta
gi|9 : TAAGTGAAGAAAT-GTTT--CATTAAAGTGGCATGTGCATTGACAAA-GCATCAGAAAGAA-TATAA--ACAACTAAT--GGAA--A--C--GA-AGC-ATCCGACCGGA-TGAA-G---ATTTA---A--GTCACTACC---GAC----AATACAAA------G-TAT--CA--------TATTT---------------------TAA-----------------ATTCCAT-T-AAATAAA--C-A---T-----AAT---GGCTA---TAAT---ATA--TGTA-A----AGG---TGT---TTT--AGAA-AACTAATATTGATTATTAT--T-TTAT-Taa
Alignments
lowQualScore : 2222222222 111111111111111111111 1 22222 11 11111111 9999999999999999999999999999999999999999999999999999999999999999999999999999999 11111111 3333333333 111 2222222222 1
lowQualScore : 0 1 4 44 3 1 3 0 3 2 2 33 1111111111 77 33 2 2 2 2 444 444 33 444 5555 88888888 33 99999999 2 999999999999999999999 33 55 0 2 33 55555 2 555 0 555 999 44 3 7777 6666 999 44 8 44 0 66 2 22222 11 88888888 4 1111111111111111111111111111111111111111111111111111111111111111111111111111111 0 44444444 99 55 66 1 11 55 33 0 2 0 55 777 9999 3333333333 2 66 66 5 1 1 5 5 3 1 0 000 77 1 3 0 0 1 3 33 0 6 9999999999 3 7
lowQualScore : . . . .. . . . . . . . .. .......... .. .. . . . . ... ... .. ... .... ........ .. ........ . ..................... .. .. . . .. ..... . ... . ... ... .. . .... .... ... .. . .. . .. . ..... .. ........ . ............................................................................... . ........ .. .. .. . .. .. .. . . . .. ... .... .......... . .. .. . . . . . . . . ... .. . . . . . . .. . . .......... . .
lowQualScore : 1 5 9 22 1 0 1 9 5 9 7 77 1111111111 33 77 7 7 7 4 111 111 22 444 3333 11111111 77 77777777 9 333333333333333333333 99 66 1 9 99 99999 9 444 5 444 666 22 3 1111 8888 222 66 0 66 0 11 2 00000 88 22222222 4 4444444444444444444444444444444444444444444444444444444444444444444444444444444 1 44444444 11 55 33 6 55 00 44 5 2 1 00 888 4444 1111111111 8 99 99 7 0 0 0 9 6 1 8 000 99 0 0 8 2 0 2 55 7 7 0000000000 3 3
consensus : AAGTAAGTAAGTAAATNTTT--T-ATTNAA-GTGACACGTGCATTGACAAA-TCAATAAAAAGC-ATATA--AACAATAAAT--G--A--A--T--GA-AGC-ACCCGGCCCGA-TGGG-C---CTATA---A--GTCACTATC---GAC----AATACAAA------G-TAT--CA--------TATTT-AAAACA-----TGA-TA---TAA-CAGT--TAT-GGCGATATTAAAT-TCAAATAAA--T-A---TA-CAAAAT---GGCTA---TATT---ATA--TATA-A----ATG---TGT---TTT--ACAA-AANTAATACTGA--ATCAT--A-TGAT-TTAT-----N--TATTTATA-TAT-TAA------AATT-ATTATT-AGTAAA-TG-------AAT-----------TT-CT-GTA-------------AGCCGA--G--T--CTTCGTT--TTAG-GAACGCTTTGGTT--AAAAACTTGGCAACTTTCC--TTTGATCACTAAGTATGATGTG---T----TTC-AA------TNT--CT--GTACAATCAAGAGTT-AAATAANCTNTG-TTATNAATATTTACACGAAATATATCACTCCTTNTA--TCATCATAGAATGAATAAAAATGCAATTCGTTTTCAACGGAGCTTGTATCACAGAATNTGCAAAATCTTTGAATTGGATTTTCGCGAACATGTCAATCCTGAGAAGAA----GAA---TGCCGCAG-GAGATTTTGCGAGAGTTGAACGTTCACTCTTGTTAAGTGTCATTTGGACATACTCTTTAGTAATAA
Reference ( family-3103 ) : AAGTAAGTAAGTAAATGTTT--T-ATTNAA-GTGACACGTGCATTGACAAA-TCAATAAAAAGC-ATATA--AACAATAAAT--G--A--A--T--GA-AGC-ACCCGGCCCGA-TGGG-C---CTATA---A--GTCACTATC---GAC----AATACAAA------G-TAT--CA--------TATTT-AAAACA-----TGA-TA---TAA-CAGT--TAT-GGCGATATTAAAT-TCAAATAAA--T-A---TA-CAAAAT---GGCTA---TATT---ATA--TATA-A----ATG---TGT---TTT--ACAA-AANTAATACTGA--ATCAT--A-TGAT-TTAT-----N--TATTTATA-TATCTAA------AATT-ATTATT-AGTAAA-TG-------AAT-----------TT-CT-GTA-------------AGCCGA--G--T--CTTCGTT--TTAG-GAACGCTTTGGTT--AAAAACTTGGCAACTTTCC--TTTGATCACTAAGTATGATGTG---T----TTC-AA------TNT--CT--GTACAATCAAGAGTT-AAATAANCTNTG-TTATNAATATTTACACGAAATATATCACTCCTTNTA--TCATCATAGAATGAATAAAAATGCAATTCGTTTTCAACGGAGCTTGTATCACAGAATNTGCAAAATCTTTGAATTGGATTTTCGCGAACATGTCAATCCTGAGAAGAA----GAA---TGCCGCAG-GAGATTTTGCGAGAGTTGAACGTTCACTCTTGTTAAGTGTCATTTGGACATACTCTTTAGTAATAA
gi|1 : AAGTAAGTAAGAAATTGTTT--T-ACTTTA-GTGACACGTTCATTGACAAA-TCAATAAAAAGC-ATATA--CACGATAA----G--A--A--T--GA-AGC-ACCCGATCCGC-TGGA-C---CTATA---C--GTCACTATC---GAC----AATACAAA------G-ACT--CA--------TATTT-AAAACA-----TAA-TA---TAATCAGT--TAT-GTCGATATTAAAT-TGAAATAAA--T-A---TG-CAAAAT---AGTTA---TACT---ATA--TATA-A----ATG---TGT---TTT--ACAA-AAGAAAT-TTGA--ATCAT--T-TGAT-TTAT-----C--TATTTATA-TATCTAACC----AATT-ATTATT-AATAAA-TG-------AAT-----------TT-CT-GTA-------------AGCCGA--G--T--CTTAGTT--TCAG-GGACGCTTTGGCT--AAAAACTTGGCAACAATCC--TTTGGTCACTAAGTATGATACG---T----TTCCAA------TAT--CT--GTTCAATCAAGAGTT-AAATAAACTGTG-TTATGAATATCTACACGAAATAAATCACTTCTTTTA--TCATCATAGAATGAATAAAAATGCAATTCATTTTCAACGGAGCTTATATCACAGAATCTACAAAATCTTTGAATTGGATTTTCGTGAACATGTCAATCCTGAGAAGAA----GAA---TGCCGCAG-GAGATTTTGCGAGAGTTGAACGTTCACTCTTGTTAAGTGTCATTTGGACATACTCTTTAGTAATAA
gi|10 : AT-TTAT-----TATTATTTTTACTATACAAGTTACCAAAT-ATTA---AGTGAA-TGTAGTCAGAAT-----------TA-TT-GTA-------------AACTAA--G--TTTCTTC-TT--TTAG-AAAAGTTTTTATT--GAAAATCTGGCACCTTTCC--TTTGATCACTGAGTATGATGTG---TTTAATTC-AAAGTTTTTCT--CT--CTACTATCAAGAGTT-AAATCATCTATG-CTATAAATATTTATATGATATATGCCACTCC--CTG--CCATCATAGGA
gi|11 : acaaacgtaacTTT--T-ATTGA--GTGACACATGGATTTCCAAA-TCAATATAAAGC-ATATA--AACAATAAATAAG--A--A--T--GG-ATC-ACCCGGCCCAA-TGGG-C---CTATA---A--TTCACTATC---GAC----AATACAAA------G-TAT--CA--------TATTT-AAAACA-----TGA-TAT--TGA-CAGT--TAT-GGTAAACTTAAGT-TCAAGCAAA--GAA---AA-CAAAAT---GGCTA---TATA---ATA--TAa
gi|12 : AAAAGAAAAC-TTATA--AACAATAATA--G--A--AAAT--GA-AGT-ACTCGGCCTAA-TGGA-C---CTTTATTTA--GTCACTTTC---GAC----ATAACAAA--------------A--------TATT---------------A-TA---TAA-CAGT--TGT-GGCGATATTGAAT-CCAAATAAATTT-ATTTTA-CATAATTAATGTTA----ATT---AT---TATT-A----TTA---TGCAAGTTA--ACAA-A--TGATACTGA--a
gi|13 : T--AAAA---TGACA-CTTTCTCTTTTTATCTCTAGGTATGATGTG---T----TTA-TA------TTG--CTCAGTACAATAAAGTGTT-AAATAATCTATGCTTAT-AATATTTACATGAAGTATATCACTCCTAATA--CCATCATAGG-----------------TCGTTTTCAATAGAGCTGGTATCACATAATATGTAACGTCTTTAAttaaa
gi|14 : ggcttacAA------AATTGACTGT--AGTAAA-TA-------TAT-----------AT-TT-AAG-------------AGCTT---G--T--CCT--TT--TTAG-TAAAGCATTAATT--GAACGTTT-------TTCC--TTTGCTCACGGA-CATGATGTG---T----TTG-AA------TTTGTCT--ACACACTTAAGTGTTCAAATTATTTCTG-CTATTAATAATTACACGAAATATATCACgata
gi|15 : taacaaatactactgaG-C---CTATA---A--GTCACTATC---GAC----AATACAAC------G-TAT--AT--------TATTT-AAAAAAAATATTGA-TG---TAAACAAT--TGA-GGCGATTATAAAT-TCAAAGAGA--T-----TAGTAAAAT---TGTTA---CGTT---ATA--TATA-A----ATG---TGT---TTT--ACAT-AATTAAT
gi|16 : aaacatgtacatggacctaccaaagtaaagcataaaatttAGTAAGTGCGTAGATCGTT--T-ATTTTTTGTGACAAGTACATTGACAAA-TCAATAGAAAGC-ATATA--AACAATAAAT--T--A--AGTT--GG-AGC-ACCTGGCCCGACTGG------CTATA---A-----AGTGTC---GATAAAGAATACAAA--------TAT---A--------TAt
gi|17 : taatATAAAACTGCAGTTCGTTTTCAATGGAGTTTGTATCACAAAATATGC-AAATATT----TTGAGTTCTTGCAAACATAATTATC----GAATAATTATAAAATTTTCAGCAACGAAATAGAGCTAGAGTAGA------ACTCTTGTTAAGTATCATGTGatggctatgctattaatattatttgaaata
gi|18 : A-TGTG-C---ATATA---A--GTCACTGTC---GAC----AATACAAC------G-TAT--TG--------TATTT-AAAACA-----TGA----------------------CGATAATAAAT-TCAAGTAAA--T-----TA--AAAAT---GGCTG---TATT---ATA--TATA-A----ATT---TGT---TTT--ttttttaaataa
gi|19 : aTAAGTAAATCTTT--TTATCAAT-GTGGCATGTGCATTAACAAG-TCAATAAAA-GC-ACATA--AACAATAAAT--G--AGAA--T--GA-AGC-ACCCG-----A-TGGG-C---CTATA---A--TTCACTATC---GGC----AATAttatgtgtctaacaataatgtaatggttacatttttt
gi|2 : AAGTAAGAAATTGTTT--T-ACTTTA-GTGACACGTTCATTGACAAA-TCAATAAAAAGC-ATATA--CACGATAA----G--A--A--T--GA-AGC-ACCCGATCCGC-TGGA-C---CTATA---C--GTCACTATC---GAC----AATACAAA------G-ACT--CA--------TATTT-AAAACA-----TAA-TA---TAATCAGT--TAT-GTCGATATTAAAT-TGAAATAAA--T-A---TG-CAAAAT---AGTTA---TACT---ATA--TATA-A----ATG---TGT---TTT--ACAA-AAGAAAT-TTGA--ATCAT--T-TGAT-TTAT-----C--TATTTATA-TATCTAACC----AATT-ATTATT-AATAAA-TG-------AAT-----------TT-CT-GTA-------------AGCCGA--G--T--CTTAGTT--TCAG-GGACGCTTTGGCT--AAAAACTTGGCAACAATCC--TTTGGTCACTAAGTATGATACG---T----TTCCAA------TAT--CT--GTTCAATCAAGAGTT-AAATAAACTGTG-TTATGAATATCTACACGAAATAAATCACTTCTTTTA--TCATCATAGAATGAATAAAAATGCAATTCATTTTCAACGGAGCTTATATCACAGAATCTACAAAATCTTTGAATTGGATTTTCGTGAACATGTCAATCCTGAGAAGAA----GAA---TGCCGCAG-GAGATTTTGCGAGAGTTGAACGTTCACTCTTGTTAAGTGTCATTTGGACATACTCTTTAGTAATAA
gi|20 : AGTAGATACATATTT--T-ATAAAA-GATACATGTGTACTGACAAA-TCAATAAAAA-C-ATATA--AACAATAAAGGAG--A--A--T--GA-AAC-ACCa
gi|21 : atagtctatgctcgttaactgattAAGCAAATATTT--T-ATTGTA--TTACCTGTGCA---ATAAA-T--ATAACACACAATATAACAAAAATAAAT--GAAA--A--TTAGATAGC-ATCCAGCACAA-TGGG-C---ACATA---ATTGTCAt
gi|22 : -C---CTATA---A--GTCACTATC---GCC----AATA-AAA------A-TAT--CA--------TATTT-AAAACAAAAA-GAA-TA---TAAACAGT--TAT-GGCGATATTGAAT-TCAAATGAA--T-A---TA-CAAAt
gi|3 : AAGTAAGTAAGTAAATCTTT--T-ATTAAA-GTGACTTGTGCATTAACAAA-TCAATAAAAAGC-ATAAA--AACAATAAATGAG--A--A--T--GA-AGC-ACCCGGCCCGA-TGGG-C---CTATA---A--GTCACTATC---GAC----AATACAAAGTACATG-TAT--CATAAAAAATTATTT-AAAACA-----TGAGTAGACTAA-CA-TAATATAAACGATATCAAAT-TCAAATGAA--T-A---TA-CAAAAT---GGTTAAACCATA---ATA--TATA-A----ATG---TGT---TTTTAACAA-A--TAATACTGA--ATAA---A-TGA----AT-----G--TAGTTAT--------G------AGTT-ATT-----GTAAGCTA-------AAT-----------TT-CT----------------------------T--CTTTG-----TAG-GAACGCTTTGGTT--AAAAACTTGGCAAATTTCC--TTTGATCATT-AGTATGATATGAAAT----TTC-----------T--TT--GTACAATCAAGAATT-AAATAAGCTTGG-TTATTAATA--TAAATATAATATATTTCTTCCACTA--TCATCATAGAATGtata
gi|4 : ccttttctaagaaggctaaccattctccagctccgattgcctatgtcgtgtaagtaagtaAGTAATTAA---TTTAAC-ATAAAA-GTGACACGTGCATTAATAAA-TCAATAAAAAGC-ATATA--AACAATAAAT--G--AGAA--T--GG-CGCGAACGGGTGCG--TTTG-C---CAATA---A--GTAACTTTC---GAC----AATACAAA------G-TAT--CA--------TATTT-AAAACA-----TTA-TA---TAA-AAGT--TAT-GGCGTTATTGAAT-TCAAATAAA--T-A---TA-CAAAAT---GGTTA---TACT---ATA--TATATATATTATGTGCTGT---TTT--TTAACAAATAATACTGA----TAA--A-TGA----AT-----G--TAGTTATA--------------------------AGTTAA----------------------------T-GTG-------------AGCTGA--GT-T--CTTCGTT--GTAG-GAACGCTTTATTT--AAAAACTTGGCATGTTTCC--TTTGATCACTATGCATGAAATG---T----TTA-AATT----TCT--CT--GTACAATAATGAGTT-AAATAAGTTATG-TTATCAATATTTACAAGAAATAAATCACGCC-TATA--TCATCATA
gi|5 : gttatgcaatagttatgtatataaaacAAGCAAGTAAATATTT--T-ACTGAA-ATGATATGTACATTGTCAAA-TCAATAAAATGC-ACATA--CAAAACCAAT--G--AC-A--C--GA-ACA-ACCCGACCCAT-TGGG-C---CTATA---A--GTCACTATC---GAC----AATACAAC------G-TAT--CG--------TTTTT-AAAACA-----TGA-TA----------T--TAA-GGCGATATAAAAT-TCAAATTAA--T-A---AA-TAAAAT---TCTTA---TATTAA-ATA--TATA-A----ATG---TGT---TTT--AAAA-AAAT----CTAT--ATCATTCA-TTAT-TTTT-----A--TGTGTGTA-AGTTTAA------AAAT-AATACTGAATAAA-TG-------AATACAGTAAAGAATTATT-GTA-------------AACCTA--A--TTCCTTCTTTTGTTAG-----GTTTTGATT--A---------CAACGTTCC--TTTGATCTCTAACTATGATAT
gi|6 : ccgtatatttgtagctggtgatatttattattccaataattagtcgtacagtgagaaatcaatcAAGTATTT--T-ATTCAA-GTGACATGTTCATTATCAAA-TCAATAGAGAGC-ATGTA--TACACTAATT--GAAA--A--T--GA-AGA-AACCAGCCTGA-CGGG-C---C--TA---A--ATGA-TATCACAGTC----AATACACA------GATATAACA---------ATTTGAAAGTA-----T-A-TA---TAA----T--TAC-GGCGATATAAAAT-TCAAATAAA--T-A---AT-CAAAAT---GACTG---AATT---ACA--TATG-A----AT----TAT-----------G-AATTAAT--TTA--ATTAT--AGTGATATTATCGTTAC--TATTAATGTTATTT----------TT-ATTATT-ACGATA-TT-------AGTCTG--------TT-CTGGTACTAGTATATTGTTAACCGAGTG--T--CTT-GTT--TTAATAAAAACCT---TT--ATAAACTTAGCAACTTTCC--TTT-ATGACT
gi|6 : ATAGTTTCTG-CTATCAATAAT-ACCTTAGATATATCAAACTTTGTATGTCATTGTAGAAAGAAttaccattatagtttctgctatcaataataccttagatatatcaaactttgtatgtcattgtagaaagaa
gi|7 : aagtattttattcaagtgacatgttcattatcaaatcaatagagagcatgtatacactaattgaaaatgaagaaaccagcctgacgggcctaaatgatatcacagtcaatacacagatataacaatttgaaagtatatataattacggcgatataaaattcaaataaataatcaaaatgactgaattacatatgaattatgaattaatttaattatagtgatattatcgttactattaatgttatttttattattacgatattagtctgttctggtactagtatattgttaaccgagtgtcttgttttaataaaaacctttataaacttagcaactttcctttatgactttaccattGACACGTGTAAT-ACAAAATCAATGTAAAGT-ATATG--CGTAACAACT--G--AC-A--T---------ACCCGGTTCGA-TGGGGCTGACTATA---C--CTCACTATC---GAC----AATATAAA------G-TAT--TA--------TA-TT-AAAACA-----TG---A---TCA-CAAT--CA-----AATATTAAATATTA---AAA--C-A---CA-CAAAAT---GTCCA---T-TT---A-AGTTATA-C----ATT---TGT---TTT--ACA
gi|7 : ataCGTT--TTAG-AAATACTT--GTTCCAAATACTTGACAACTTTCC--TTTGAGCATCAACAATGCTG-G---T----TTT--A------TAT--TT--GTtatcattcttatttttatcacgaagcaagttagcaaacagtactgaataagatcaaatagttatgctttattataagaagaattcatacgttttagaaatacttgttccaaatacttgacaactttcctttgagcatcaacaatgctggttttatatttgtcta
gi|8 : atagacacgtgtaatacaaaatcaatgtaaagtatatgcgtaacaactgacatacccggttcgatggggctgactatacctcactatcgacaatataaagtattatattaaaacatgatcacaatcaaatattaaatattaaaacacacaaaatgtccatttaagttatacatttgttttacatatcattcttatttttatcacgaagcaagttagcaaacagtactgaataagatcaaatagttatgctttattataagaagaattcataTT--T-ATTAAA-GTGACACGTGCA-------A-TCAATAAAAATC-ATATA--AACAATAAAT--G--AGAA--T--GT-AGC-ACTCAGCCCGA-TGGG-C---CTATA---A--GTCACTATC---GAT----AACACAAA------G-TAT--CA--------CATTT-AAAACA-----TGC-TA---TAATCAGT--TAT-GGCGATATCAAAT-TCAAATAAA--T-A---TA-CAAAAT---GGATA---TACTTTAACA--TATA-A----ATA---TGTC--TTT--TTAGTAAATAATACTGA--ATAA---A-TGA----AT-----G--TA---AT-------------------------------AA-TG-------AAA-----------TT-TT-GTT-------------AGCTGA--GTTT--CTTCTTT--TTAG-GAACGCTTTGGTT--AAA--------AACTTTCC--TTTGATCACTAAGTATGATGTG---T----TTcta
gi|9 : TAAGTGAAGAAATGTTT--C-ATTAAA-GTGGCATGTGCATTGACAAA-GCATCAGAAAGA-ATATA--AACAACTAAT--GGAA--A--C--GA-AGC-ATCCGACCGGA-TGAA-G---ATTTA---A--GTCACTACC---GAC----AATACAAA------G-TAT--CA--------TATTT---------------------TAA-----------------ATTCCAT-T-AAATAAA--C-A---T-----AAT---GGCTA---TAAT---ATA--TGTA-A----AGG---TGT---TTT--AGAA-AACTAATATTGATTATTAT-------T-TTAT-----T--AAGTTA-A-CAAATAA------TATT-Aaa
Alignments
lowQualScore : 2222222222 111111111111111111111 1 8888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888 11 3333333333 111 2222222222 1
lowQualScore : 0 1 2 44 3 1 3 0 3 2 2 33 1111111111 77 33 2 2 2 2 444 444 33 444 5555 88888888 33 99999999 2 999999999999999999999 33 55 0 2 33 55555 2 555 0 555 999 44 3 7777 6666 999 44 8 44 0 66 2 7777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777 11 55 66 1 11 55 33 0 2 0 55 777 9999 3333333333 2 66 66 5 1 1 5 5 3 1 0 000 77 1 3 0 0 1 3 33 0 6 9999999999 3 7
lowQualScore : . . . .. . . . . . . . .. .......... .. .. . . . . ... ... .. ... .... ........ .. ........ . ..................... .. .. . . .. ..... . ... . ... ... .. . .... .... ... .. . .. . .. . ..................................................................................................................................... .. .. .. . .. .. .. . . . .. ... .... .......... . .. .. . . . . . . . . ... .. . . . . . . .. . . .......... . .
lowQualScore : 1 5 3 22 1 0 1 9 5 9 7 77 1111111111 33 77 7 7 7 4 111 111 22 444 3333 11111111 77 77777777 9 333333333333333333333 99 66 1 9 99 99999 9 444 5 444 666 22 3 1111 8888 222 66 0 66 0 11 2 0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 66 55 33 6 55 00 44 5 2 1 00 888 4444 1111111111 8 99 99 7 0 0 0 9 6 1 8 000 99 0 0 8 2 0 2 55 7 7 0000000000 3 3
consensus : AAGTAAGTAAGTAAATNTTT--T-ATTNAA-GTGACACGTGCATTGACAAA-TCAATAAAAAGC-ATATA--AACAATAAAT--G--A--A--T--GA-AGC-ACCCGGCCCGA-TGGG-C---CTATA---A--GTCACTATC---GAC----AATACAAA------G-TAT--CA--------TATTT-AAAACA-----TGA-TA---TAA-CAGT--TAT-GGCGATATTAAAT-TCAAATAAA--T-A---TA-CAAAAT---GGCTA---TATT---ATA--TATA-A----ATG---TGT---TTT--ACAA-AANTAATACTGA--ATCAT--A-TGAT-TTAT-----N--TATTT-----AT-A-TA---T-TAA--AATT-AT----TATT-A-GTAA--A-TG-------AAT-----------TT-CT-GTA-------------AGCCGA--G-T--CTTCGTT--TTAG-GAACGCTTTGGTT--AAAAACTTGGCAACTTTCC--TTTGATCACTAAGTATGATGTG---T----TTC-AA------TNT--CT--GTACAATCAAGAGTT-AAATAANCTNTG-TTATNAATATTTACACGAAATATATCACTCCTTNTA--TCATCATAGAATGAATAAAAATGCAATTCGTTTTCAACGGAGCTTGTATCACAGAATNTGCAAAATCTTTGAATTGGATTTTCGCGAACATGTCAATCCTGAGAAGAA----GAA---TGCCGCAG-GAGATTTTGCGAGAGTTGAACGTTCACTCTTGTTAAGTGTCATTTGGACATACTCTTTAGTAATAA
Reference ( family-3103 ) : AAGTAAGTAAGTAAATNTTT--T-ATTNAA-GTGACACGTGCATTGACAAA-TCAATAAAAAGC-ATATA--AACAATAAAT--G--A--A--T--GA-AGC-ACCCGGCCCGA-TGGG-C---CTATA---A--GTCACTATC---GAC----AATACAAA------G-TAT--CA--------TATTT-AAAACA-----TGA-TA---TAA-CAGT--TAT-GGCGATATTAAAT-TCAAATAAA--T-A---TA-CAAAAT---GGCTA---TATT---ATA--TATA-A----ATG---TGT---TTT--ACAA-AANTAATACTGA--ATCAT--A-TGAT-TTAT-----N--TATTT-----AT-A-TA---T-TAA--AATT-AT----TATT-A-GTAA--A-TG-------AAT-----------TT-CT-GTA-------------AGCCGA--G-T--CTTCGTT--TTAG-GAACGCTTTGGTT--AAAAACTTGGCAACTTTCC--TTTGATCACTAAGTATGATGTG---T----TTC-AA------TNT--CT--GTACAATCAAGAGTT-AAATAANCTNTG-TTATNAATATTTACACGAAATATATCACTCCTTNTA--TCATCATAGAATGAATAAAAATGCAATTCGTTTTCAACGGAGCTTGTATCACAGAATNTGCAAAATCTTTGAATTGGATTTTCGCGAACATGTCAATCCTGAGAAGAA----GAA---TGCCGCAG-GAGATTTTGCGAGAGTTGAACGTTCACTCTTGTTAAGTGTCATTTGGACATACTCTTTAGTAATAA
gi|1 : AAGTAAGTAAGAAATTGTTT--T-ACTTTA-GTGACACGTTCATTGACAAA-TCAATAAAAAGC-ATATA--CACGATAA----G--A--A--T--GA-AGC-ACCCGATCCGC-TGGA-C---CTATA---C--GTCACTATC---GAC----AATACAAA------G-ACT--CA--------TATTT-AAAACA-----TAA-TA---TAATCAGT--TAT-GTCGATATTAAAT-TGAAATAAA--T-A---TG-CAAAAT---AGTTA---TACT---ATA--TATA-A----ATG---TGT---TTT--ACAA-AAGAAAT-TTGA--ATCAT--T-TGAT-TTAT-----C--TATTT-----AT-A-TA---TCTAACCAATT-AT----TATT-A-ATAA--A-TG-------AAT-----------TT-CT-GTA-------------AGCCGA--G-T--CTTAGTT--TCAG-GGACGCTTTGGCT--AAAAACTTGGCAACAATCC--TTTGGTCACTAAGTATGATACG---T----TTCCAA------TAT--CT--GTTCAATCAAGAGTT-AAATAAACTGTG-TTATGAATATCTACACGAAATAAATCACTTCTTTTA--TCATCATAGAATGAATAAAAATGCAATTCATTTTCAACGGAGCTTATATCACAGAATCTACAAAATCTTTGAATTGGATTTTCGTGAACATGTCAATCCTGAGAAGAA----GAA---TGCCGCAG-GAGATTTTGCGAGAGTTGAACGTTCACTCTTGTTAAGTGTCATTTGGACATACTCTTTAGTAATAA
gi|10 : AT-TTAT-----TATTATTT-----TT-ACTA---T-ACA--AGTT-ACCAAATATT-AAGTGA--A-TGTAGTCAGAAT-----------TA-TT-GTA-------------AACTAA--G-TTTCTTC-TT--TTAG-AAAAGTTTTTATT--GAAAATCTGGCACCTTTCC--TTTGATCACTGAGTATGATGTG---TTTAATTC-AAAGTTTTTCT--CT--CTACTATCAAGAGTT-AAATCATCTATG-CTATAAATATTTATATGATATATGCCACTCC--CTG--CCATCATAGGA
gi|11 : acaaacgtaacTTT--T-ATTGA--GTGACACATGGATTTCCAAA-TCAATATAAAGC-ATATA--AACAATAAATAAG--A--A--T--GG-ATC-ACCCGGCCCAA-TGGG-C---CTATA---A--TTCACTATC---GAC----AATACAAA------G-TAT--CA--------TATTT-AAAACA-----TGA-TAT--TGA-CAGT--TAT-GGTAAACTTAAGT-TCAAGCAAA--GAA---AA-CAAAAT---GGCTA---TATA---ATA--TAa
gi|12 : AAAAGAAAAC-TTATA--AACAATAATA--G--A--AAAT--GA-AGT-ACTCGGCCTAA-TGGA-C---CTTTATTTA--GTCACTTTC---GAC----ATAACAAA--------------A--------TATT---------------A-TA---TAA-CAGT--TGT-GGCGATATTGAAT-CCAAATAAATTT-ATTTTA-CATAATTAATGTTA----ATT---AT---TATT-A----TTA---TGCAAGTTA--ACAA-A--TGATACTGA--a
gi|13 : T--AAAA---TGACA-CTTTCTCTTTTTATCTCTAGGTATGATGTG---T----TTA-TA------TTG--CTCAGTACAATAAAGTGTT-AAATAATCTATGCTTAT-AATATTTACATGAAGTATATCACTCCTAATA--CCATCATAGG-----------------TCGTTTTCAATAGAGCTGGTATCACATAATATGTAACGTCTTTAAttaaa
gi|14 : ggcttacAA--AATTGAC----TGT--A-GTAA--A-TA-------TAT-----------AT-TT-AAG-------------AGCTT---G-T--CCT--TT--TTAG-TAAAGCATTAATT--GAACGTTT-------TTCC--TTTGCTCACGGA-CATGATGTG---T----TTG-AA------TTTGTCT--ACACACTTAAGTGTTCAAATTATTTCTG-CTATTAATAATTACACGAAATATATCACgata
gi|15 : taacaaatactactgaG-C---CTATA---A--GTCACTATC---GAC----AATACAAC------G-TAT--AT--------TATTT-AAAAAAAATATTGA-TG---TAAACAAT--TGA-GGCGATTATAAAT-TCAAAGAGA--T-----TAGTAAAAT---TGTTA---CGTT---ATA--TATA-A----ATG---TGT---TTT--ACAT-AATTAAT
gi|16 : aaacatgtacatggacctaccaaagtaaagcataaaatttAGTAAGTGCGTAGATCGTT--T-ATTTTTTGTGACAAGTACATTGACAAA-TCAATAGAAAGC-ATATA--AACAATAAAT--T--A--AGTT--GG-AGC-ACCTGGCCCGACTGG------CTATA---A-----AGTGTC---GATAAAGAATACAAA--------TAT---A--------TAt
gi|17 : taatATAAAACTGCAGTTCGTTTTCAATGGAGTTTGTATCACAAAATATGC-AAATATT----TTGAGTTCTTGCAAACATAATTATC----GAATAATTATAAAATTTTCAGCAACGAAATAGAGCTAGAGTAGA------ACTCTTGTTAAGTATCATGTGatggctatgctattaatattatttgaaata
gi|18 : A-TGTG-C---ATATA---A--GTCACTGTC---GAC----AATACAAC------G-TAT--TG--------TATTT-AAAACA-----TGA----------------------CGATAATAAAT-TCAAGTAAA--T-----TA--AAAAT---GGCTG---TATT---ATA--TATA-A----ATT---TGT---TTT--ttttttaaataa
gi|19 : aTAAGTAAATCTTT--TTATCAAT-GTGGCATGTGCATTAACAAG-TCAATAAAA-GC-ACATA--AACAATAAAT--G--AGAA--T--GA-AGC-ACCCG-----A-TGGG-C---CTATA---A--TTCACTATC---GGC----AATAttatgtgtctaacaataatgtaatggttacatttttt
gi|2 : AAGTAAGAAATTGTTT--T-ACTTTA-GTGACACGTTCATTGACAAA-TCAATAAAAAGC-ATATA--CACGATAA----G--A--A--T--GA-AGC-ACCCGATCCGC-TGGA-C---CTATA---C--GTCACTATC---GAC----AATACAAA------G-ACT--CA--------TATTT-AAAACA-----TAA-TA---TAATCAGT--TAT-GTCGATATTAAAT-TGAAATAAA--T-A---TG-CAAAAT---AGTTA---TACT---ATA--TATA-A----ATG---TGT---TTT--ACAA-AAGAAAT-TTGA--ATCAT--T-TGAT-TTAT-----C--TATTT-----AT-A-TA---TCTAACCAATT-AT----TATT-A-ATAA--A-TG-------AAT-----------TT-CT-GTA-------------AGCCGA--G-T--CTTAGTT--TCAG-GGACGCTTTGGCT--AAAAACTTGGCAACAATCC--TTTGGTCACTAAGTATGATACG---T----TTCCAA------TAT--CT--GTTCAATCAAGAGTT-AAATAAACTGTG-TTATGAATATCTACACGAAATAAATCACTTCTTTTA--TCATCATAGAATGAATAAAAATGCAATTCATTTTCAACGGAGCTTATATCACAGAATCTACAAAATCTTTGAATTGGATTTTCGTGAACATGTCAATCCTGAGAAGAA----GAA---TGCCGCAG-GAGATTTTGCGAGAGTTGAACGTTCACTCTTGTTAAGTGTCATTTGGACATACTCTTTAGTAATAA
gi|20 : AGTAGATACATATTT--T-ATAAAA-GATACATGTGTACTGACAAA-TCAATAAAAA-C-ATATA--AACAATAAAGGAG--A--A--T--GA-AAC-ACCa
gi|21 : atagtctatgctcgttaactgattAAGCAAATATTT--T-ATTGTA--TTACCTGTGCA---ATAAA-T--ATAACACACAATATAACAAAAATAAAT--GAAA--A--TTAGATAGC-ATCCAGCACAA-TGGG-C---ACATA---ATTGTCAt
gi|22 : -C---CTATA---A--GTCACTATC---GCC----AATA-AAA------A-TAT--CA--------TATTT-AAAACAAAAA-GAA-TA---TAAACAGT--TAT-GGCGATATTGAAT-TCAAATGAA--T-A---TA-CAAAt
gi|3 : AAGTAAGTAAGTAAATCTTT--T-ATTAAA-GTGACTTGTGCATTAACAAA-TCAATAAAAAGC-ATAAA--AACAATAAATGAG--A--A--T--GA-AGC-ACCCGGCCCGA-TGGG-C---CTATA---A--GTCACTATC---GAC----AATACAAAGTACATG-TAT--CATAAAAAATTATTT-AAAACA-----TGAGTAGACTAA-CA-TAATATAAACGATATCAAAT-TCAAATGAA--T-A---TA-CAAAAT---GGTTAAACCATA---ATA--TATA-A----ATG---TGT---TTTTAACAA-A--TAATACTGA--ATAA---A-TGA----AT-----G--TAGTT-----AT------------G--AGTT-AT----T------GTAA--GCTA-------AAT-----------TT-CT---------------------------T--CTTTG-----TAG-GAACGCTTTGGTT--AAAAACTTGGCAAATTTCC--TTTGATCATT-AGTATGATATGAAAT----TTC-----------T--TT--GTACAATCAAGAATT-AAATAAGCTTGG-TTATTAATA--TAAATATAATATATTTCTTCCACTA--TCATCATAGAATGtata
gi|4 : ccttttctaagaaggctaaccattctccagctccgattgcctatgtcgtgtaagtaagtaAGTAATTAA---TTTAAC-ATAAAA-GTGACACGTGCATTAATAAA-TCAATAAAAAGC-ATATA--AACAATAAAT--G--AGAA--T--GG-CGCGAACGGGTGCG--TTTG-C---CAATA---A--GTAACTTTC---GAC----AATACAAA------G-TAT--CA--------TATTT-AAAACA-----TTA-TA---TAA-AAGT--TAT-GGCGTTATTGAAT-TCAAATAAA--T-A---TA-CAAAAT---GGTTA---TACT---ATA--TATATATATTATGTGCTGT---TTT--TTAACAAATAATACTGA----TAA--A-TGA----AT-----G--TAGTT-----AT-A-AG---T-TAA-------------------------------------------------------T-GTG-------------AGCTGA--GTT--CTTCGTT--GTAG-GAACGCTTTATTT--AAAAACTTGGCATGTTTCC--TTTGATCACTATGCATGAAATG---T----TTA-AATT----TCT--CT--GTACAATAATGAGTT-AAATAAGTTATG-TTATCAATATTTACAAGAAATAAATCACGCC-TATA--TCATCATA
gi|5 : gttatgcaatagttatgtatataaaacAAGCAAGTAAATATTT--T-ACTGAA-ATGATATGTACATTGTCAAA-TCAATAAAATGC-ACATA--CAAAACCAAT--G--AC-A--C--GA-ACA-ACCCGACCCAT-TGGG-C---CTATA---A--GTCACTATC---GAC----AATACAAC------G-TAT--CG--------TTTTT-AAAACA-----TGA-TA----------T--TAA-GGCGATATAAAAT-TCAAATTAA--T-A---AA-TAAAAT---TCTTA---TATTAA-ATA--TATA-A----ATG---TGT---TTT--AAAA-AAAT----CTAT--ATCATTCA-TTAT-T--T-----T--TATGT-----GT-G-TAAGTT-TAA--AAAT-AA----TACTGA-ATAA--A-TG-------AATACAGTAAAGAATTATT-GTA-------------AACCTA--A-TTCCTTCTTTTGTTAG-----GTTTTGATT--A---------CAACGTTCC--TTTGATCTCTAACTATGATAT
gi|6 : ccgtatatttgtagctggtgatatttattattccaataattagtcgtacagtgagaaatcaatcAAGTATTT--T-ATTCAA-GTGACATGTTCATTATCAAA-TCAATAGAGAGC-ATGTA--TACACTAATT--GAAA--A--T--GA-AGA-AACCAGCCTGA-CGGG-C---C--TA---A--ATGA-TATCACAGTC----AATACACA------GATATAACA---------ATTTGAAAGTA-----T-A-TA---TAA----T--TAC-GGCGATATAAAAT-TCAAATAAA--T-A---AT-CAAAAT---GACTG---AATT---ACA--TATG-A----AT----TAT-----------G-AATTAAT--TTA--ATTAT--AGTGATATTATCGTTAC--TATTA-----AT-GTTA---T-T-----TTT-AT----TATT-A-CGAT--A-TT-------AGTCTG--------TT-CTGGTACTAGTATATTGTTAACCGAGTG-T--CTT-GTT--TTAATAAAAACCT---TT--ATAAACTTAGCAACTTTCC--TTT-ATGACT
gi|6 : ATAGTTTCTG-CTATCAATAAT-ACCTTAGATATATCAAACTTTGTATGTCATTGTAGAAAGAAttaccattatagtttctgctatcaataataccttagatatatcaaactttgtatgtcattgtagaaagaa
gi|7 : aagtattttattcaagtgacatgttcattatcaaatcaatagagagcatgtatacactaattgaaaatgaagaaaccagcctgacgggcctaaatgatatcacagtcaatacacagatataacaatttgaaagtatatataattacggcgatataaaattcaaataaataatcaaaatgactgaattacatatgaattatgaattaatttaattatagtgatattatcgttactattaatgttatttttattattacgatattagtctgttctggtactagtatattgttaaccgagtgtcttgttttaataaaaacctttataaacttagcaactttcctttatgactttaccattGACACGTGTAAT-ACAAAATCAATGTAAAGT-ATATG--CGTAACAACT--G--AC-A--T---------ACCCGGTTCGA-TGGGGCTGACTATA---C--CTCACTATC---GAC----AATATAAA------G-TAT--TA--------TA-TT-AAAACA-----TG---A---TCA-CAAT--CA-----AATATTAAATATTA---AAA--C-A---CA-CAAAAT---GTCCA---T-TT---A-AGTTATA-C----ATT---TGT---TTT--ACA
gi|7 : ataCGTT--TTAG-AAATACTT--GTTCCAAATACTTGACAACTTTCC--TTTGAGCATCAACAATGCTG-G---T----TTT--A------TAT--TT--GTtatcattcttatttttatcacgaagcaagttagcaaacagtactgaataagatcaaatagttatgctttattataagaagaattcatacgttttagaaatacttgttccaaatacttgacaactttcctttgagcatcaacaatgctggttttatatttgtcta
gi|8 : atagacacgtgtaatacaaaatcaatgtaaagtatatgcgtaacaactgacatacccggttcgatggggctgactatacctcactatcgacaatataaagtattatattaaaacatgatcacaatcaaatattaaatattaaaacacacaaaatgtccatttaagttatacatttgttttacatatcattcttatttttatcacgaagcaagttagcaaacagtactgaataagatcaaatagttatgctttattataagaagaattcataTT--T-ATTAAA-GTGACACGTGCA-------A-TCAATAAAAATC-ATATA--AACAATAAAT--G--AGAA--T--GT-AGC-ACTCAGCCCGA-TGGG-C---CTATA---A--GTCACTATC---GAT----AACACAAA------G-TAT--CA--------CATTT-AAAACA-----TGC-TA---TAATCAGT--TAT-GGCGATATCAAAT-TCAAATAAA--T-A---TA-CAAAAT---GGATA---TACTTTAACA--TATA-A----ATA---TGTC--TTT--TTAGTAAATAATACTGA--ATAA---A-TGA----AT-----G--TA-----------A-TA---A-TGA--AATT--T----TGTT-A-GC------TG-------AGT-----------TT-CT---------------------------T--CT---TT--TTAG-GAACGCTTTGGTT--AAA--------AACTTTCC--TTTGATCACTAAGTATGATGTG---T----TTcta
gi|9 : TAAGTGAAGAAATGTTT--C-ATTAAA-GTGGCATGTGCATTGACAAA-GCATCAGAAAGA-ATATA--AACAACTAAT--GGAA--A--C--GA-AGC-ATCCGACCGGA-TGAA-G---ATTTA---A--GTCACTACC---GAC----AATACAAA------G-TAT--CA--------TATTT---------------------TAA-----------------ATTCCAT-T-AAATAAA--C-A---T-----AAT---GGCTA---TAAT---ATA--TGTA-A----AGG---TGT---TTT--AGAA-AACTAATATTGATTATTAT-------T-TTAT-----T--AAGTTAACAAATAA-TA---T-TAAATAATC-GTA---TACA-A-CTAGGTA-TG-------AAT-----------TA-TT-GTA-------------aa
Alignments
lowQualScore : 2222222222 111111111111111111111 1 8888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888 11 3333333333 111 2222222222 1
lowQualScore : 0 1 2 44 3 1 3 0 3 2 2 33 1111111111 77 33 2 2 2 2 444 444 33 444 5555 88888888 33 99999999 2 999999999999999999999 33 55 0 2 33 55555 2 555 0 555 999 44 3 7777 6666 999 44 8 44 0 66 2 7777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777 11 55 66 1 11 55 33 0 2 0 55 777 9999 3333333333 2 66 66 5 1 1 5 5 3 1 0 000 77 1 3 0 0 1 3 33 0 6 9999999999 3 7
lowQualScore : . . . .. . . . . . . . .. .......... .. .. . . . . ... ... .. ... .... ........ .. ........ . ..................... .. .. . . .. ..... . ... . ... ... .. . .... .... ... .. . .. . .. . ..................................................................................................................................... .. .. .. . .. .. .. . . . .. ... .... .......... . .. .. . . . . . . . . ... .. . . . . . . .. . . .......... . .
lowQualScore : 1 5 3 22 1 0 1 9 5 9 7 77 1111111111 33 77 7 7 7 4 111 111 22 444 3333 11111111 77 77777777 9 333333333333333333333 99 66 1 9 99 99999 9 444 5 444 666 22 3 1111 8888 222 66 0 66 0 11 2 0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 66 55 33 6 55 00 44 5 2 1 00 888 4444 1111111111 8 99 99 7 0 0 0 9 6 1 8 000 99 0 0 8 2 0 2 55 7 7 0000000000 3 3
consensus : AAGTAAGTAAGTAAATNTTT--T-ATTNAA-GTGACACGTGCATTGACAAA-TCAATAAAAAGC-ATATA--AACAATAAAT--G--A--A--T--GA-AGC-ACCCGGCCCGA-TGGG-C---CTATA---A--GTCACTATC---GAC----AATACAAA------G-TAT--CA--------TATTT-AAAACA-----TGA-TA---TAA-CAGT--TAT-GGCGATATTAAAT-TCAAATAAA--T-A---TA-CAAAAT---GGCTA---TATT---ATA--TATA-A----ATG---TGT---TTT--ACAA-AANTAATACTGA--ATCAT--A-TGAT-TTAT-----N--TATTT-----AT-A-TA---T-TAA--AATT-AT----TATT-A-GTAA--A-TG-------AAT-----------TT-CT-GTA-------------AGCCGA--G-T--CTTCGTT--TTAG-GAACGCTTTGGTT--AAAAACTTGGCAACTTTCC--TTTGATCACTAAGTATGATGTG---T----TTC-AA------TNT--CT--GTACAATCAAGAGTT-AAATAANCTNTG-TTATNAATATTTACACGAAATATATCACTCCTTNTA--TCATCATAGAATGAATAAAAATGCAATTCGTTTTCAACGGAGCTTGTATCACAGAATNTGCAAAATCTTTGAATTGGATTTTCGCGAACATGTCAATCCTGAGAAGAA----GAA---TGCCGCAG-GAGATTTTGCGAGAGTTGAACGTTCACTCTTGTTAAGTGTCATTTGGACATACTCTTTAGTAATAA
Reference ( family-3103 ) : AAGTAAGTAAGTAAATNTTT--T-ATTNAA-GTGACACGTGCATTGACAAA-TCAATAAAAAGC-ATATA--AACAATAAAT--G--A--A--T--GA-AGC-ACCCGGCCCGA-TGGG-C---CTATA---A--GTCACTATC---GAC----AATACAAA------G-TAT--CA--------TATTT-AAAACA-----TGA-TA---TAA-CAGT--TAT-GGCGATATTAAAT-TCAAATAAA--T-A---TA-CAAAAT---GGCTA---TATT---ATA--TATA-A----ATG---TGT---TTT--ACAA-AANTAATACTGA--ATCAT--A-TGAT-TTAT-----N--TATTT-----AT-A-TA---T-TAA--AATT-AT----TATT-A-GTAA--A-TG-------AAT-----------TT-CT-GTA-------------AGCCGA--G-T--CTTCGTT--TTAG-GAACGCTTTGGTT--AAAAACTTGGCAACTTTCC--TTTGATCACTAAGTATGATGTG---T----TTC-AA------TNT--CT--GTACAATCAAGAGTT-AAATAANCTNTG-TTATNAATATTTACACGAAATATATCACTCCTTNTA--TCATCATAGAATGAATAAAAATGCAATTCGTTTTCAACGGAGCTTGTATCACAGAATNTGCAAAATCTTTGAATTGGATTTTCGCGAACATGTCAATCCTGAGAAGAA----GAA---TGCCGCAG-GAGATTTTGCGAGAGTTGAACGTTCACTCTTGTTAAGTGTCATTTGGACATACTCTTTAGTAATAA
gi|1 : AAGTAAGTAAGAAATTGTTT--T-ACTTTA-GTGACACGTTCATTGACAAA-TCAATAAAAAGC-ATATA--CACGATAA----G--A--A--T--GA-AGC-ACCCGATCCGC-TGGA-C---CTATA---C--GTCACTATC---GAC----AATACAAA------G-ACT--CA--------TATTT-AAAACA-----TAA-TA---TAATCAGT--TAT-GTCGATATTAAAT-TGAAATAAA--T-A---TG-CAAAAT---AGTTA---TACT---ATA--TATA-A----ATG---TGT---TTT--ACAA-AAGAAAT-TTGA--ATCAT--T-TGAT-TTAT-----C--TATTT-----AT-A-TA---TCTAACCAATT-AT----TATT-A-ATAA--A-TG-------AAT-----------TT-CT-GTA-------------AGCCGA--G-T--CTTAGTT--TCAG-GGACGCTTTGGCT--AAAAACTTGGCAACAATCC--TTTGGTCACTAAGTATGATACG---T----TTCCAA------TAT--CT--GTTCAATCAAGAGTT-AAATAAACTGTG-TTATGAATATCTACACGAAATAAATCACTTCTTTTA--TCATCATAGAATGAATAAAAATGCAATTCATTTTCAACGGAGCTTATATCACAGAATCTACAAAATCTTTGAATTGGATTTTCGTGAACATGTCAATCCTGAGAAGAA----GAA---TGCCGCAG-GAGATTTTGCGAGAGTTGAACGTTCACTCTTGTTAAGTGTCATTTGGACATACTCTTTAGTAATAA
gi|10 : AT-TTAT-----TATTATTT-----TT-ACTA---T-ACA--AGTT-ACCAAATATT-AAGTGA--A-TGTAGTCAGAAT-----------TA-TT-GTA-------------AACTAA--G-TTTCTTC-TT--TTAG-AAAAGTTTTTATT--GAAAATCTGGCACCTTTCC--TTTGATCACTGAGTATGATGTG---TTTAATTC-AAAGTTTTTCT--CT--CTACTATCAAGAGTT-AAATCATCTATG-CTATAAATATTTATATGATATATGCCACTCC--CTG--CCATCATAGGA
gi|11 : acaaacgtaacTTT--T-ATTGA--GTGACACATGGATTTCCAAA-TCAATATAAAGC-ATATA--AACAATAAATAAG--A--A--T--GG-ATC-ACCCGGCCCAA-TGGG-C---CTATA---A--TTCACTATC---GAC----AATACAAA------G-TAT--CA--------TATTT-AAAACA-----TGA-TAT--TGA-CAGT--TAT-GGTAAACTTAAGT-TCAAGCAAA--GAA---AA-CAAAAT---GGCTA---TATA---ATA--TAa
gi|12 : AAAAGAAAAC-TTATA--AACAATAATA--G--A--AAAT--GA-AGT-ACTCGGCCTAA-TGGA-C---CTTTATTTA--GTCACTTTC---GAC----ATAACAAA--------------A--------TATT---------------A-TA---TAA-CAGT--TGT-GGCGATATTGAAT-CCAAATAAATTT-ATTTTA-CATAATTAATGTTA----ATT---AT---TATT-A----TTA---TGCAAGTTA--ACAA-A--TGATACTGA--a
gi|13 : T--AAAA---TGACA-CTTTCTCTTTTTATCTCTAGGTATGATGTG---T----TTA-TA------TTG--CTCAGTACAATAAAGTGTT-AAATAATCTATGCTTAT-AATATTTACATGAAGTATATCACTCCTAATA--CCATCATAGG-----------------TCGTTTTCAATAGAGCTGGTATCACATAATATGTAACGTCTTTAAttaaa
gi|14 : ggcttacAA--AATTGAC----TGT--A-GTAA--A-TA-------TAT-----------AT-TT-AAG-------------AGCTT---G-T--CCT--TT--TTAG-TAAAGCATTAATT--GAACGTTT-------TTCC--TTTGCTCACGGA-CATGATGTG---T----TTG-AA------TTTGTCT--ACACACTTAAGTGTTCAAATTATTTCTG-CTATTAATAATTACACGAAATATATCACgata
gi|15 : taacaaatactactgaG-C---CTATA---A--GTCACTATC---GAC----AATACAAC------G-TAT--AT--------TATTT-AAAAAAAATATTGA-TG---TAAACAAT--TGA-GGCGATTATAAAT-TCAAAGAGA--T-----TAGTAAAAT---TGTTA---CGTT---ATA--TATA-A----ATG---TGT---TTT--ACAT-AATTAAT
gi|16 : aaacatgtacatggacctaccaaagtaaagcataaaatttAGTAAGTGCGTAGATCGTT--T-ATTTTTTGTGACAAGTACATTGACAAA-TCAATAGAAAGC-ATATA--AACAATAAAT--T--A--AGTT--GG-AGC-ACCTGGCCCGACTGG------CTATA---A-----AGTGTC---GATAAAGAATACAAA--------TAT---A--------TAt
gi|17 : taatATAAAACTGCAGTTCGTTTTCAATGGAGTTTGTATCACAAAATATGC-AAATATT----TTGAGTTCTTGCAAACATAATTATC----GAATAATTATAAAATTTTCAGCAACGAAATAGAGCTAGAGTAGA------ACTCTTGTTAAGTATCATGTGatggctatgctattaatattatttgaaata
gi|18 : A-TGTG-C---ATATA---A--GTCACTGTC---GAC----AATACAAC------G-TAT--TG--------TATTT-AAAACA-----TGA----------------------CGATAATAAAT-TCAAGTAAA--T-----TA--AAAAT---GGCTG---TATT---ATA--TATA-A----ATT---TGT---TTT--ttttttaaataa
gi|19 : aTAAGTAAATCTTT--TTATCAAT-GTGGCATGTGCATTAACAAG-TCAATAAAA-GC-ACATA--AACAATAAAT--G--AGAA--T--GA-AGC-ACCCG-----A-TGGG-C---CTATA---A--TTCACTATC---GGC----AATAttatgtgtctaacaataatgtaatggttacatttttt
gi|2 : AAGTAAGAAATTGTTT--T-ACTTTA-GTGACACGTTCATTGACAAA-TCAATAAAAAGC-ATATA--CACGATAA----G--A--A--T--GA-AGC-ACCCGATCCGC-TGGA-C---CTATA---C--GTCACTATC---GAC----AATACAAA------G-ACT--CA--------TATTT-AAAACA-----TAA-TA---TAATCAGT--TAT-GTCGATATTAAAT-TGAAATAAA--T-A---TG-CAAAAT---AGTTA---TACT---ATA--TATA-A----ATG---TGT---TTT--ACAA-AAGAAAT-TTGA--ATCAT--T-TGAT-TTAT-----C--TATTT-----AT-A-TA---TCTAACCAATT-AT----TATT-A-ATAA--A-TG-------AAT-----------TT-CT-GTA-------------AGCCGA--G-T--CTTAGTT--TCAG-GGACGCTTTGGCT--AAAAACTTGGCAACAATCC--TTTGGTCACTAAGTATGATACG---T----TTCCAA------TAT--CT--GTTCAATCAAGAGTT-AAATAAACTGTG-TTATGAATATCTACACGAAATAAATCACTTCTTTTA--TCATCATAGAATGAATAAAAATGCAATTCATTTTCAACGGAGCTTATATCACAGAATCTACAAAATCTTTGAATTGGATTTTCGTGAACATGTCAATCCTGAGAAGAA----GAA---TGCCGCAG-GAGATTTTGCGAGAGTTGAACGTTCACTCTTGTTAAGTGTCATTTGGACATACTCTTTAGTAATAA
gi|20 : AGTAGATACATATTT--T-ATAAAA-GATACATGTGTACTGACAAA-TCAATAAAAA-C-ATATA--AACAATAAAGGAG--A--A--T--GA-AAC-ACCa
gi|21 : atagtctatgctcgttaactgattAAGCAAATATTT--T-ATTGTA--TTACCTGTGCA---ATAAA-T--ATAACACACAATATAACAAAAATAAAT--GAAA--A--TTAGATAGC-ATCCAGCACAA-TGGG-C---ACATA---ATTGTCAt
gi|22 : -C---CTATA---A--GTCACTATC---GCC----AATA-AAA------A-TAT--CA--------TATTT-AAAACAAAAA-GAA-TA---TAAACAGT--TAT-GGCGATATTGAAT-TCAAATGAA--T-A---TA-CAAAt
gi|3 : AAGTAAGTAAGTAAATCTTT--T-ATTAAA-GTGACTTGTGCATTAACAAA-TCAATAAAAAGC-ATAAA--AACAATAAATGAG--A--A--T--GA-AGC-ACCCGGCCCGA-TGGG-C---CTATA---A--GTCACTATC---GAC----AATACAAAGTACATG-TAT--CATAAAAAATTATTT-AAAACA-----TGAGTAGACTAA-CA-TAATATAAACGATATCAAAT-TCAAATGAA--T-A---TA-CAAAAT---GGTTAAACCATA---ATA--TATA-A----ATG---TGT---TTTTAACAA-A--TAATACTGA--ATAA---A-TGA----AT-----G--TAGTT-----AT------------G--AGTT-AT----T------GTAA--GCTA-------AAT-----------TT-CT---------------------------T--CTTTG-----TAG-GAACGCTTTGGTT--AAAAACTTGGCAAATTTCC--TTTGATCATT-AGTATGATATGAAAT----TTC-----------T--TT--GTACAATCAAGAATT-AAATAAGCTTGG-TTATTAATA--TAAATATAATATATTTCTTCCACTA--TCATCATAGAATGtata
gi|4 : ccttttctaagaaggctaaccattctccagctccgattgcctatgtcgtgtaagtaagtaAGTAATTAA---TTTAAC-ATAAAA-GTGACACGTGCATTAATAAA-TCAATAAAAAGC-ATATA--AACAATAAAT--G--AGAA--T--GG-CGCGAACGGGTGCG--TTTG-C---CAATA---A--GTAACTTTC---GAC----AATACAAA------G-TAT--CA--------TATTT-AAAACA-----TTA-TA---TAA-AAGT--TAT-GGCGTTATTGAAT-TCAAATAAA--T-A---TA-CAAAAT---GGTTA---TACT---ATA--TATATATATTATGTGCTGT---TTT--TTAACAAATAATACTGA----TAA--A-TGA----AT-----G--TAGTT-----AT-A-AG---T-TAA-------------------------------------------------------T-GTG-------------AGCTGA--GTT--CTTCGTT--GTAG-GAACGCTTTATTT--AAAAACTTGGCATGTTTCC--TTTGATCACTATGCATGAAATG---T----TTA-AATT----TCT--CT--GTACAATAATGAGTT-AAATAAGTTATG-TTATCAATATTTACAAGAAATAAATCACGCC-TATA--TCATCATA
gi|5 : gttatgcaatagttatgtatataaaacAAGCAAGTAAATATTT--T-ACTGAA-ATGATATGTACATTGTCAAA-TCAATAAAATGC-ACATA--CAAAACCAAT--G--AC-A--C--GA-ACA-ACCCGACCCAT-TGGG-C---CTATA---A--GTCACTATC---GAC----AATACAAC------G-TAT--CG--------TTTTT-AAAACA-----TGA-TA----------T--TAA-GGCGATATAAAAT-TCAAATTAA--T-A---AA-TAAAAT---TCTTA---TATTAA-ATA--TATA-A----ATG---TGT---TTT--AAAA-AAAT----CTAT--ATCATTCA-TTAT-T--T-----T--TATGT-----GT-G-TAAGTT-TAA--AAAT-AA----TACTGA-ATAA--A-TG-------AATACAGTAAAGAATTATT-GTA-------------AACCTA--A-TTCCTTCTTTTGTTAG-----GTTTTGATT--A---------CAACGTTCC--TTTGATCTCTAACTATGATAT
gi|6 : ccgtatatttgtagctggtgatatttattattccaataattagtcgtacagtgagaaatcaatcAAGTATTT--T-ATTCAA-GTGACATGTTCATTATCAAA-TCAATAGAGAGC-ATGTA--TACACTAATT--GAAA--A--T--GA-AGA-AACCAGCCTGA-CGGG-C---C--TA---A--ATGA-TATCACAGTC----AATACACA------GATATAACA---------ATTTGAAAGTA-----T-A-TA---TAA----T--TAC-GGCGATATAAAAT-TCAAATAAA--T-A---AT-CAAAAT---GACTG---AATT---ACA--TATG-A----AT----TAT-----------G-AATTAAT--TTA--ATTAT--AGTGATATTATCGTTAC--TATTA-----AT-GTTA---T-T-----TTT-AT----TATT-A-CGAT--A-TT-------AGTCTG--------TT-CTGGTACTAGTATATTGTTAACCGAGTG-T--CTT-GTT--TTAATAAAAACCT---TT--ATAAACTTAGCAACTTTCC--TTT-ATGACT
gi|6 : ATAGTTTCTG-CTATCAATAAT-ACCTTAGATATATCAAACTTTGTATGTCATTGTAGAAAGAAttaccattatagtttctgctatcaataataccttagatatatcaaactttgtatgtcattgtagaaagaa
gi|7 : aagtattttattcaagtgacatgttcattatcaaatcaatagagagcatgtatacactaattgaaaatgaagaaaccagcctgacgggcctaaatgatatcacagtcaatacacagatataacaatttgaaagtatatataattacggcgatataaaattcaaataaataatcaaaatgactgaattacatatgaattatgaattaatttaattatagtgatattatcgttactattaatgttatttttattattacgatattagtctgttctggtactagtatattgttaaccgagtgtcttgttttaataaaaacctttataaacttagcaactttcctttatgactttaccattGACACGTGTAAT-ACAAAATCAATGTAAAGT-ATATG--CGTAACAACT--G--AC-A--T---------ACCCGGTTCGA-TGGGGCTGACTATA---C--CTCACTATC---GAC----AATATAAA------G-TAT--TA--------TA-TT-AAAACA-----TG---A---TCA-CAAT--CA-----AATATTAAATATTA---AAA--C-A---CA-CAAAAT---GTCCA---T-TT---A-AGTTATA-C----ATT---TGT---TTT--ACA
gi|7 : ataCGTT--TTAG-AAATACTT--GTTCCAAATACTTGACAACTTTCC--TTTGAGCATCAACAATGCTG-G---T----TTT--A------TAT--TT--GTtatcattcttatttttatcacgaagcaagttagcaaacagtactgaataagatcaaatagttatgctttattataagaagaattcatacgttttagaaatacttgttccaaatacttgacaactttcctttgagcatcaacaatgctggttttatatttgtcta
gi|8 : atagacacgtgtaatacaaaatcaatgtaaagtatatgcgtaacaactgacatacccggttcgatggggctgactatacctcactatcgacaatataaagtattatattaaaacatgatcacaatcaaatattaaatattaaaacacacaaaatgtccatttaagttatacatttgttttacatatcattcttatttttatcacgaagcaagttagcaaacagtactgaataagatcaaatagttatgctttattataagaagaattcataTT--T-ATTAAA-GTGACACGTGCA-------A-TCAATAAAAATC-ATATA--AACAATAAAT--G--AGAA--T--GT-AGC-ACTCAGCCCGA-TGGG-C---CTATA---A--GTCACTATC---GAT----AACACAAA------G-TAT--CA--------CATTT-AAAACA-----TGC-TA---TAATCAGT--TAT-GGCGATATCAAAT-TCAAATAAA--T-A---TA-CAAAAT---GGATA---TACTTTAACA--TATA-A----ATA---TGTC--TTT--TTAGTAAATAATACTGA--ATAA---A-TGA----AT-----G--TA-----------A-TA---A-TGA--AATT--T----TGTT-A-GC------TG-------AGT-----------TT-CT---------------------------T--CT---TT--TTAG-GAACGCTTTGGTT--AAA--------AACTTTCC--TTTGATCACTAAGTATGATGTG---T----TTcta
gi|9 : TAAGTGAAGAAATGTTT--C-ATTAAA-GTGGCATGTGCATTGACAAA-GCATCAGAAAGA-ATATA--AACAACTAAT--GGAA--A--C--GA-AGC-ATCCGACCGGA-TGAA-G---ATTTA---A--GTCACTACC---GAC----AATACAAA------G-TAT--CA--------TATTT---------------------TAA-----------------ATTCCAT-T-AAATAAA--C-A---T-----AAT---GGCTA---TAAT---ATA--TGTA-A----AGG---TGT---TTT--AGAA-AACTAATATTGATTATTAT-------T-TTAT-----T--AAGTTAACAAATAA-TA---T-TAAATAATC-GTA---TACA-A-CTAGGTA-TG-------AAT-----------TA-TT-GTA-------------aa
blockSeqs : A C AA T G T T A A AC ATAAGA AA TA T G C G TGA TTT TT ACA AAAG GTACATG AA TAAAAAAT G AATATTGATGTAAACAA AA TA A TT ATTT G TAA AAC TTA GT T TATT GTGC AAG TA C AT A TT C TAGTGATATTATCGTTACTATTAATGTTATTTTTATTATTACGATATTAGTCTGTTCTGGTACTAGTATATTGTTAACCGAGTGT AG TG TA A TT CC AA C CT AAA TTAA CAAAGTTTT C GT CA C T A C A T T TAA TG T C A A TA C TTATAAAATT C A
blockSeqs : A C . . T . G . . . ATGAGA GT . . . . . . . . . . GA . . . AAAAGAATATAAACAG . T . . AA . . . AA . . . A C . T AG A . A TTCATTATTTTTATGTGTGTAAGTTTAAAAATAATACTGAATAAATGAATACAGTAAAGAATTATTGTAAACCTAATTC TG . A A TA . CG A . . . AAATT T . . . T A . T T T TTT . T A A A TG . GAA . .
blockSeqs : T G . . A . A . . . AGGAGA . . . . . . . . . . . G . . . TGAGTAGACTAACA . T . . A . . . . . . . G . . . AA A . T TTTGATTTATCTATTTATATATCTAACCAATTATTATTAATAAATGAATTTCTGTAAGCCGAGT CG . T C TG . AA A . . . CCAA T . . . T C . G A C CAC . A . C . .
blockSeqs : A A . . T . G . . . ATGAAA . . . . . . . . . . . G . . . TGATATTGACAG . A . . A . . . . . . . T . . . AA A . C ATGAATGTAGTTATGAGTTATTGTAAGCTAAATTTCTT CT . G C TG . AA T . . . ATA A . . . A G . T T C TTG . .
blockSeqs : A A . . A . G . . . ATGAGA . . . . . . . . . . . G . . . TAATATAATCAG . T . . A . . . . . . . G . . . AT A . T ATGAATGTAATAATGAAATTTTGTTAGCTGAGTTTCTT CG . G C TA . AA A . . . GAA C . . . G T . C T T TA .
blockSeqs : A C . . G . A . . . ATGAGA . . . . . . . . . . . G . . . TGCTATAATCAG . T . . A . . . . . . . G . . . AA . . A AATGAATGTAGTTATAAGTTAATGTGAGCTGAGTT C . G A TG . AA A . . . TA A . . . G A . C A A C .
blockSeqs : A A . . A . A . . . TTGAAA . . . . . . . . . . . A . . . TTATATAAAAG . T . . A . . . . . . . G . . . AC . . T G . A T TG . TA A . . . C . . . T C . . . T
blockSeqs : G A . . A . G . . . ATGAGA . . . . . . . . . . . G . . . ATATAACAG . A . . A . . . . . . . T . . . . . . . . G C . . A A . . .
blockSeqs : A G . . G . A . . . ATGGAA . . . . . . . . . . . G . . . TGATCACAA . C . . A . . . . . . . A . . . . . . . . . . . . .
blockSeqs : . . . . C . G . . . ATGAC . . . . . . . . . . . G . . . TATATAA . T . . A . . . . . . . G . . . . . .
blockSeqs : . . A . . . . . CTGAC . . . . . . . . . . . G . . . TGATA . . . . A . . . . . . . . . .
blockSeqs : . . A . . . . . TAGA . . . . . . . . . . . G . . . TGA . . . . . . . . . .
blockSeqs : . . . . ATTA . . . . . . . . . . . . . . . TAA . . . . . .
blockSeqs : . . GA . . . . . . . . . . . . . .
blockSeqs : . . . . . .
blockSeqs : . . . .
blockSeqCons : ATGAGA**** CAA*******
originalCons : AAGTAAGTAAGTAAATNTTT--T-ATTNAA-GTGACACGTGCATTGACAAA-TCAATAAAAAGC-ATATA--AACAATAAAT--G--A--A--T--GA-AGC-ACCCGGCCCGA-TGGG-C---CTATA---A--GTCACTATC---GAC----AATACAAA------G-TAT--CA--------TATTT-AAAACA-----TGA-TA---TAA-CAGT--TAT-GGCGATATTAAAT-TCAAATAAA--T-A---TA-CAAAAT---GGCTA---TATT---ATA--TATA-A----ATG---TGT---TTT--ACAA-AANTAATACTGA--ATCAT--A-TGAT-TTAT-----N--TATTT-----AT-A-TA---T-TAA--AATT-AT----TATT-A-GTAA--A-TG-------AAT-----------TT-CT-GTA-------------AGCCGA--G-T--CTTCGTT--TTAG-GAACGCTTTGGTT--AAAAACTTGGCAACTTTCC--TTTGATCACTAAGTATGATGTG---T----TTC-AA------TNT--CT--GTACAATCAAGAGTT-AAATAANCTNTG-TTATNAATATTTACACGAAATATATCACTCCTTNTA--TCATCATAGAATGAATAAAAATGCAATTCGTTTTCAACGGAGCTTGTATCACAGAATNTGCAAAATCTTTGAATTGGATTTTCGCGAACATGTCAATCCTGAGAAGAA----GAA---TGCCGCAG-GAGATTTTGCGAGAGTTGAACGTTCACTCTTGTTAAGTGTCATTTGGACATACTCTTTAGTAATAA
finalCons : AAGTAAGTAAGTAAATNTTT--T-ATTNAA-GTGACACGTGCATTGACAAA-TCAATAAAAAGC-ATATA--AACAATAAATGAGA----A--T--GA-AGC-ACCCGGCCCGA-TGGG-C---CTATA---A--GTCACTATC---GAC----AATACAAA------G-TAT--CA--------TATTT-AAAACA-----TGA-TA---TAA-CAGT--TAT-GGCGATATTAAAT-TCAAATAAA--T-A---TA-CAAAAT---GGCTA---TATT---ATA--TATA-A----ATG---TGT---TTT--ACAA-AANTAATACTGA--ATCAT--A-TGAT-TTAT-----N--TATTT-----AT-A-TA---T-TAA--AATT-AT----TATT-A-GTAA--A-TG-------AAT-----------TT-CT-GTA-------------AGCCGA--G-T--CTTCGTT--TTAG-GAACGCTTTGGTT--AAAAACTTGGCAACTTTCC--TTTGATCACTAAGTATGATGTG---T----TTCAA-------TNT--CT--GTACAATCAAGAGTT-AAATAANCTNTG-TTATNAATATTTACACGAAATATATCACTCCTTNTA--TCATCATAGAATGAATAAAAATGCAATTCGTTTTCAACGGAGCTTGTATCACAGAATNTGCAAAATCTTTGAATTGGATTTTCGCGAACATGTCAATCCTGAGAAGAA----GAA---TGCCGCAG-GAGATTTTGCGAGAGTTGAACGTTCACTCTTGTTAAGTGTCATTTGGACATACTCTTTAGTAATAA
Alignments
lowQualScore : 111111111111111111111 1 8888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888 11 3333333333 111 2222222222 1
lowQualScore : 0 1 2 44 3 1 3 0 3 2 2 33 33 2 2 2 2 444 444 33 444 5555 88888888 33 99999999 2 999999999999999999999 33 55 0 2 33 55555 2 555 0 555 999 44 3 7777 6666 999 44 8 44 0 66 2 7777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777 11 55 66 1 11 55 33 0 2 0 55 777 9999 2222222222 2 66 66 5 1 1 5 6 1 0 2 444 0 3 0 0 1 3 33 0 6 9999999999 3 7
lowQualScore : . . . .. . . . . . . . .. .. . . . . ... ... .. ... .... ........ .. ........ . ..................... .. .. . . .. ..... . ... . ... ... .. . .... .... ... .. . .. . .. . ..................................................................................................................................... .. .. .. . .. .. .. . . . .. ... .... .......... . .. .. . . . . . . . . ... . . . . . . .. . . .......... . .
lowQualScore : 1 5 3 22 1 0 1 9 5 9 7 77 77 7 7 7 4 111 111 22 444 3333 11111111 77 77777777 9 333333333333333333333 99 66 1 9 99 99999 9 444 5 444 666 22 3 1111 8888 222 66 0 66 0 11 2 0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 66 55 33 6 55 00 44 5 2 1 00 888 4444 0000000000 8 99 99 7 0 0 7 6 7 4 1 555 8 0 8 2 0 2 55 7 7 0000000000 3 3
consensus : AAGTAAGTAAGTAAATNTTT--T-ATTNAA-GTGACACGTGCATTGACAAA-TCAATAAAAAGC-ATATA--AACAATAAATGAGAAT--GA-AGC-ACCCGGCCCGA-TGGG-C---CTATA---A--GTCACTATC---GAC----AATACAAA------G-TAT--CA--------TATTT-AAAACA-----TGA-TA---TAA-CAGT--TAT-GGCGATATTAAAT-TCAAATAAA--T-A---TA-CAAAAT---GGCTA---TATT---ATA--TATA-A----ATG---TGT---TTT--ACAA-AANTAATACTGA--ATCAT--A-TGAT-TTAT-----N--TATTT-----AT-A-TA---T-TAA--AATT-AT----TATT-A-GTAA--A-TG-------AAT-----------TT-CT-GTA-------------AGCCGA--G-T--CTTCGTT--TTAG-GAACGCTTTGGTT--AAAAACTTGGCAACTTTCC--TTTGATCACTAAGTATGATGTG---T----TT-CAA------TNT--CT--GTACAATCAAGAGTT-AAATAANCTNTG-TTATNAATATTTACACGAAATANATCACTCCTTNTATCATCATAGAATGAATAAAAATGCAATTCGTTTTCAACGGAGCTTGTATCACAGAATNTGCAAAATCTTTGAATTGGATTTTCGCGAACATGTCAATCCTGAGAAGAA----GAA---TGCCGCAG-GAGATTTTGCGAGAGTTGAACGTTCACTCTTGTTAAGTGTCATTTGGACATACTCTTTAGTAATAA
Reference ( family-3103 ) : AAGTAAGTAAGTAAATNTTT--T-ATTNAA-GTGACACGTGCATTGACAAA-TCAATAAAAAGC-ATATA--AACAATAAATGAGAAT--GA-AGC-ACCCGGCCCGA-TGGG-C---CTATA---A--GTCACTATC---GAC----AATACAAA------G-TAT--CA--------TATTT-AAAACA-----TGA-TA---TAA-CAGT--TAT-GGCGATATTAAAT-TCAAATAAA--T-A---TA-CAAAAT---GGCTA---TATT---ATA--TATA-A----ATG---TGT---TTT--ACAA-AANTAATACTGA--ATCAT--A-TGAT-TTAT-----N--TATTT-----AT-A-TA---T-TAA--AATT-AT----TATT-A-GTAA--A-TG-------AAT-----------TT-CT-GTA-------------AGCCGA--G-T--CTTCGTT--TTAG-GAACGCTTTGGTT--AAAAACTTGGCAACTTTCC--TTTGATCACTAAGTATGATGTG---T----TT-CAA------TNT--CT--GTACAATCAAGAGTT-AAATAANCTNTG-TTATNAATATTTACACGAAATATATCACTCCTTNTATCATCATAGAATGAATAAAAATGCAATTCGTTTTCAACGGAGCTTGTATCACAGAATNTGCAAAATCTTTGAATTGGATTTTCGCGAACATGTCAATCCTGAGAAGAA----GAA---TGCCGCAG-GAGATTTTGCGAGAGTTGAACGTTCACTCTTGTTAAGTGTCATTTGGACATACTCTTTAGTAATAA
gi|1 : AAGTAAGTAAGAAATTGTTT--T-ACTTTA-GTGACACGTTCATTGACAAA-TCAATAAAAAGC-ATATA--CACGATA----AGAAT--GA-AGC-ACCCGATCCGC-TGGA-C---CTATA---C--GTCACTATC---GAC----AATACAAA------G-ACT--CA--------TATTT-AAAACA-----TAA-TA---TAATCAGT--TAT-GTCGATATTAAAT-TGAAATAAA--T-A---TG-CAAAAT---AGTTA---TACT---ATA--TATA-A----ATG---TGT---TTT--ACAA-AAGAAAT-TTGA--ATCAT--T-TGAT-TTAT-----C--TATTT-----AT-A-TA---TCTAACCAATT-AT----TATT-A-ATAA--A-TG-------AAT-----------TT-CT-GTA-------------AGCCGA--G-T--CTTAGTT--TCAG-GGACGCTTTGGCT--AAAAACTTGGCAACAATCC--TTTGGTCACTAAGTATGATACG---T----TTCCAA------TAT--CT--GTTCAATCAAGAGTT-AAATAAACTGTG-TTATGAATATCTACACGAAATAAATCACTTCTTTTATCATCATAGAATGAATAAAAATGCAATTCATTTTCAACGGAGCTTATATCACAGAATCTACAAAATCTTTGAATTGGATTTTCGTGAACATGTCAATCCTGAGAAGAA----GAA---TGCCGCAG-GAGATTTTGCGAGAGTTGAACGTTCACTCTTGTTAAGTGTCATTTGGACATACTCTTTAGTAATAA
gi|10 : AT-TTAT-----TATTATTT-----TT-ACTA---T-ACA--AGTT-ACCAAATATT-AAGTGA--A-TGTAGTCAGAAT-----------TA-TT-GTA-------------AACTAA--G-TTTCTTC-TT--TTAG-AAAAGTTTTTATT--GAAAATCTGGCACCTTTCC--TTTGATCACTGAGTATGATGTG---TTTAATT-CAAAGTTTTTCT--CT--CTACTATCAAGAGTT-AAATCATCTATG-CTATAAATATTTATATGATATATGCCACTCC--CTGCCATCATAGGA
gi|11 : acaaacgtaacTTT--T-ATTGA--GTGACACATGGATTTCCAAA-TCAATATAAAGC-ATATA--AACAATAAATAAGAAT--GG-ATC-ACCCGGCCCAA-TGGG-C---CTATA---A--TTCACTATC---GAC----AATACAAA------G-TAT--CA--------TATTT-AAAACA-----TGA-TAT--TGA-CAGT--TAT-GGTAAACTTAAGT-TCAAGCAAA--GAA---AA-CAAAAT---GGCTA---TATA---ATA--TAa
gi|12 : AAAAGAAAAC-TTATA--AACAATAATAGAAAAT--GA-AGT-ACTCGGCCTAA-TGGA-C---CTTTATTTA--GTCACTTTC---GAC----ATAACAAA--------------A--------TATT---------------A-TA---TAA-CAGT--TGT-GGCGATATTGAAT-CCAAATAAATTT-ATTTTA-CATAATTAATGTTA----ATT---AT---TATT-A----TTA---TGCAAGTTA--ACAA-A--TGATACTGA--a
gi|13 : T--AAAA---TGACA-CTTTCTCTTTTTATCTCTAGGTATGATGTG---T----TT-ATA------TTG--CTCAGTACAATAAAGTGTT-AAATAATCTATGCTTAT-AATATTTACATGAAGTATATCACTCCTAATACCATCATAGG-----------------TCGTTTTCAATAGAGCTGGTATCACATAATATGTAACGTCTTTAAttaaa
gi|14 : ggcttacAA--AATTGAC----TGT--A-GTAA--A-TA-------TAT-----------AT-TT-AAG-------------AGCTT---G-T--CCT--TT--TTAG-TAAAGCATTAATT--GAACGTTT-------TTCC--TTTGCTCACGGA-CATGATGTG---T----TT-GAA------TTTGTCT--ACACACTTAAGTGTTCAAATTATTTCTG-CTATTAATAATTACACGAAATATATCACgata
gi|15 : taacaaatactactgaG-C---CTATA---A--GTCACTATC---GAC----AATACAAC------G-TAT--AT--------TATTT-AAAAAAAATATTGA-TG---TAAACAAT--TGA-GGCGATTATAAAT-TCAAAGAGA--T-----TAGTAAAAT---TGTTA---CGTT---ATA--TATA-A----ATG---TGT---TTT--ACAT-AATTAAT
gi|16 : aaacatgtacatggacctaccaaagtaaagcataaaatttAGTAAGTGCGTAGATCGTT--T-ATTTTTTGTGACAAGTACATTGACAAA-TCAATAGAAAGC-ATATA--AACAATAAATTAAGTT--GG-AGC-ACCTGGCCCGACTGG------CTATA---A-----AGTGTC---GATAAAGAATACAAA--------TAT---A--------TAt
gi|17 : taatATAAAACTGCAGTTCGTTTTCAATGGAGTTTGTATCACAAAATATGC-AAATATT----TTGAGTTCTTGCAAACATAATTATC----GAATAATTATAAAATTTTCAGCAACGAAATAGAGCTAGAGTAGA------ACTCTTGTTAAGTATCATGTGatggctatgctattaatattatttgaaata
gi|18 : A-TGTG-C---ATATA---A--GTCACTGTC---GAC----AATACAAC------G-TAT--TG--------TATTT-AAAACA-----TGA----------------------CGATAATAAAT-TCAAGTAAA--T-----TA--AAAAT---GGCTG---TATT---ATA--TATA-A----ATT---TGT---TTT--ttttttaaataa
gi|19 : aTAAGTAAATCTTT--TTATCAAT-GTGGCATGTGCATTAACAAG-TCAATAAAA-GC-ACATA--AACAATAAATGAGAAT--GA-AGC-ACCCG-----A-TGGG-C---CTATA---A--TTCACTATC---GGC----AATAttatgtgtctaacaataatgtaatggttacatttttt
gi|2 : AAGTAAGAAATTGTTT--T-ACTTTA-GTGACACGTTCATTGACAAA-TCAATAAAAAGC-ATATA--CACGATA----AGAAT--GA-AGC-ACCCGATCCGC-TGGA-C---CTATA---C--GTCACTATC---GAC----AATACAAA------G-ACT--CA--------TATTT-AAAACA-----TAA-TA---TAATCAGT--TAT-GTCGATATTAAAT-TGAAATAAA--T-A---TG-CAAAAT---AGTTA---TACT---ATA--TATA-A----ATG---TGT---TTT--ACAA-AAGAAAT-TTGA--ATCAT--T-TGAT-TTAT-----C--TATTT-----AT-A-TA---TCTAACCAATT-AT----TATT-A-ATAA--A-TG-------AAT-----------TT-CT-GTA-------------AGCCGA--G-T--CTTAGTT--TCAG-GGACGCTTTGGCT--AAAAACTTGGCAACAATCC--TTTGGTCACTAAGTATGATACG---T----TTCCAA------TAT--CT--GTTCAATCAAGAGTT-AAATAAACTGTG-TTATGAATATCTACACGAAATAAATCACTTCTTTTATCATCATAGAATGAATAAAAATGCAATTCATTTTCAACGGAGCTTATATCACAGAATCTACAAAATCTTTGAATTGGATTTTCGTGAACATGTCAATCCTGAGAAGAA----GAA---TGCCGCAG-GAGATTTTGCGAGAGTTGAACGTTCACTCTTGTTAAGTGTCATTTGGACATACTCTTTAGTAATAA
gi|20 : AGTAGATACATATTT--T-ATAAAA-GATACATGTGTACTGACAAA-TCAATAAAAA-C-ATATA--AACAATAAAGGAGAAT--GA-AAC-ACCa
gi|21 : atagtctatgctcgttaactgattAAGCAAATATTT--T-ATTGTA--TTACCTGTGCA---ATAAA-T--ATAACACACAATATAACAAAAATAAATGAAAATTAGATAGC-ATCCAGCACAA-TGGG-C---ACATA---ATTGTCAt
gi|22 : -C---CTATA---A--GTCACTATC---GCC----AATA-AAA------A-TAT--CA--------TATTT-AAAACAAAAA-GAA-TA---TAAACAGT--TAT-GGCGATATTGAAT-TCAAATGAA--T-A---TA-CAAAt
gi|3 : AAGTAAGTAAGTAAATCTTT--T-ATTAAA-GTGACTTGTGCATTAACAAA-TCAATAAAAAGC-ATAAA--AACAATAAATGAGAAT--GA-AGC-ACCCGGCCCGA-TGGG-C---CTATA---A--GTCACTATC---GAC----AATACAAAGTACATG-TAT--CATAAAAAATTATTT-AAAACA-----TGAGTAGACTAA-CA-TAATATAAACGATATCAAAT-TCAAATGAA--T-A---TA-CAAAAT---GGTTAAACCATA---ATA--TATA-A----ATG---TGT---TTTTAACAA-A--TAATACTGA--ATAA---A-TGA----AT-----G--TAGTT-----AT------------G--AGTT-AT----T------GTAA--GCTA-------AAT-----------TT-CT---------------------------T--CTTTG-----TAG-GAACGCTTTGGTT--AAAAACTTGGCAAATTTCC--TTTGATCATT-AGTATGATATGAAAT----TT-C----------T--TT--GTACAATCAAGAATT-AAATAAGCTTGG-TTATTAATA--TAAATATAATATATTTCTTCCACTATCATCATAGAATGtata
gi|4 : ccttttctaagaaggctaaccattctccagctccgattgcctatgtcgtgtaagtaagtaAGTAATTAA---TTTAAC-ATAAAA-GTGACACGTGCATTAATAAA-TCAATAAAAAGC-ATATA--AACAATAAATGAGAAT--GG-CGCGAACGGGTGCG--TTTG-C---CAATA---A--GTAACTTTC---GAC----AATACAAA------G-TAT--CA--------TATTT-AAAACA-----TTA-TA---TAA-AAGT--TAT-GGCGTTATTGAAT-TCAAATAAA--T-A---TA-CAAAAT---GGTTA---TACT---ATA--TATATATATTATGTGCTGT---TTT--TTAACAAATAATACTGA----TAA--A-TGA----AT-----G--TAGTT-----AT-A-AG---T-TAA-------------------------------------------------------T-GTG-------------AGCTGA--GTT--CTTCGTT--GTAG-GAACGCTTTATTT--AAAAACTTGGCATGTTTCC--TTTGATCACTATGCATGAAATG---T----TT-AAATT----TCT--CT--GTACAATAATGAGTT-AAATAAGTTATG-TTATCAATATTTACAAGAAATAAATCACGCC-TATATCATCATA
gi|5 : gttatgcaatagttatgtatataaaacAAGCAAGTAAATATTT--T-ACTGAA-ATGATATGTACATTGTCAAA-TCAATAAAATGC-ACATA--CAAAACCAATGACA-C--GA-ACA-ACCCGACCCAT-TGGG-C---CTATA---A--GTCACTATC---GAC----AATACAAC------G-TAT--CG--------TTTTT-AAAACA-----TGA-TA----------T--TAA-GGCGATATAAAAT-TCAAATTAA--T-A---AA-TAAAAT---TCTTA---TATTAA-ATA--TATA-A----ATG---TGT---TTT--AAAA-AAAT----CTAT--ATCATTCA-TTAT-T--T-----T--TATGT-----GT-G-TAAGTT-TAA--AAAT-AA----TACTGA-ATAA--A-TG-------AATACAGTAAAGAATTATT-GTA-------------AACCTA--A-TTCCTTCTTTTGTTAG-----GTTTTGATT--A---------CAACGTTCC--TTTGATCTCTAACTATGATAT
gi|6 : ccgtatatttgtagctggtgatatttattattccaataattagtcgtacagtgagaaatcaatcAAGTATTT--T-ATTCAA-GTGACATGTTCATTATCAAA-TCAATAGAGAGC-ATGTA--TACACTAATTGAAAAT--GA-AGA-AACCAGCCTGA-CGGG-C---C--TA---A--ATGA-TATCACAGTC----AATACACA------GATATAACA---------ATTTGAAAGTA-----T-A-TA---TAA----T--TAC-GGCGATATAAAAT-TCAAATAAA--T-A---AT-CAAAAT---GACTG---AATT---ACA--TATG-A----AT----TAT-----------G-AATTAAT--TTA--ATTAT--AGTGATATTATCGTTAC--TATTA-----AT-GTTA---T-T-----TTT-AT----TATT-A-CGAT--A-TT-------AGTCTG--------TT-CTGGTACTAGTATATTGTTAACCGAGTG-T--CTT-GTT--TTAATAAAAACCT---TT--ATAAACTTAGCAACTTTCC--TTT-ATGACT
gi|7 : GACACGTGTAAT-ACAAAATCAATGTAAAGT-ATATG--CGTAACAACTGACA---------T-ACCCGGTTCGA-TGGGGCTGACTATA---C--CTCACTATC---GAC----AATATAAA------G-TAT--TA--------TA-TT-AAAACA-----TG---A---TCA-CAAT--CA-----AATATTAAATATTA---AAA--C-A---CA-CAAAAT---GTCCA---T-TT---A-AGTTATA-C----ATT---TGT---TTT--ACAttaccattatagtttctgctatcaataataccttagatatatcaaactttgtatgtcattgtagaaagaa
gi|7 : ataCGTT--TTAG-AAATACTT--GTTCCAAATACTTGACAACTTTCC--TTTGAGCATCAACAATGCTG-G---T----TT-T-A------TAT--TT--GTtatcattcttatttttatcacgaagcaagttagcaaacagtactgaataagatcaaatagttatgctttattataagaagaattcatacgttttagaaatacttgttccaaatacttgacaactttcctttgagcatcaacaatgctggttttatatttgtcta
gi|8 : atagacacgtgtaatacaaaatcaatgtaaagtatatgcgtaacaactgacatacccggttcgatggggctgactatacctcactatcgacaatataaagtattatattaaaacatgatcacaatcaaatattaaatattaaaacacacaaaatgtccatttaagttatacatttgttttacatatcattcttatttttatcacgaagcaagttagcaaacagtactgaataagatcaaatagttatgctttattataagaagaattcataTT--T-ATTAAA-GTGACACGTGCA-------A-TCAATAAAAATC-ATATA--AACAATAAATGAGAAT--GT-AGC-ACTCAGCCCGA-TGGG-C---CTATA---A--GTCACTATC---GAT----AACACAAA------G-TAT--CA--------CATTT-AAAACA-----TGC-TA---TAATCAGT--TAT-GGCGATATCAAAT-TCAAATAAA--T-A---TA-CAAAAT---GGATA---TACTTTAACA--TATA-A----ATA---TGTC--TTT--TTAGTAAATAATACTGA--ATAA---A-TGA----AT-----G--TA-----------A-TA---A-TGA--AATT--T----TGTT-A-GC------TG-------AGT-----------TT-CT---------------------------T--CT---TT--TTAG-GAACGCTTTGGTT--AAA--------AACTTTCC--TTTGATCACTAAGTATGATGTG---T----TT-cta
gi|9 : TAAGTGAAGAAATGTTT--C-ATTAAA-GTGGCATGTGCATTGACAAA-GCATCAGAAAGA-ATATA--AACAACTAATGGAAAC--GA-AGC-ATCCGACCGGA-TGAA-G---ATTTA---A--GTCACTACC---GAC----AATACAAA------G-TAT--CA--------TATTT---------------------TAA-----------------ATTCCAT-T-AAATAAA--C-A---T-----AAT---GGCTA---TAAT---ATA--TGTA-A----AGG---TGT---TTT--AGAA-AACTAATATTGATTATTAT-------T-TTAT-----T--AAGTTAACAAATAA-TA---T-TAAATAATC-GTA---TACA-A-CTAGGTA-TG-------AAT-----------TA-TT-GTA-------------aa