lowQualScore : 11111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 1 1111111111111111111 1 111111111 11 1 1 222222 22222 11111111 11111 55555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555 1 1 33333 11 111111111111 1 1 1 222222222222222222 111111111111111111 4444444444444444444444444444444444444444444 1111111
lowQualScore : 0 999 5 5 9999999999999999999 2 8 4 2 6 5 5 0 3 3 999 7 777777777 33 5 2 5 2 333333 22222 1 4 777 66666666 22222 99999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999 5 7 5 0 66 00000 3 88 2 2 99999 77 1 222222222222 1 6 2 5555 5 22 8888888888 3 999999999999999999 444444444444444444 22 0000000000000000000000000000000000000000000 0 5555555 6
lowQualScore : . ... . . ................... . . . . . . . . . . ... . ......... .. . . . . ...... ..... . . ... ........ ..... ............................................................................................... . . . . .. ..... . .. . . ..... .. . ............ . . . .... . .. .......... . .................. .................. .. ........................................... . ....... .
lowQualScore : 3 666 0 0 4444444444444444444 5 8 5 1 2 6 0 9 5 9 333 4 888888888 22 0 4 0 1 444444 55555 1 4 888 11111111 55555 11111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 0 0 0 8 99 44444 2 55 1 5 11111 00 0 222222222222 2 6 9 0000 0 99 8888888888 8 555555555555555555 888888888888888888 88 1111111111111111111111111111111111111111111 4 2222222 0
consensus : TCTTTCATTCTG--G-AGTGTGCTT-A-------------------CTCATG-TTCTATATACTTGCTCCGATACAAA-ACCGTCCATATTTCTTACCTTTCGCTTGTTTTCGGTACAGTACCCTGTACCACAGGTGACCAATATAGTGACCCNTT---TAATGTTAAAATT---------AAACTGTATCTTTGCA-AACATTTAAAGAACGAATGAATGTCGAC----ACATACCGT----AAAACACCGTTTACATT-AAAACAAACATTTACAAAGAA---AGAAAAAGCTGCATTCA------ACATAC-----AA------AT--------------------AATT------C------TC---------------GT------C--GC--ACGGG-------------ACATTATTAGTATTGTTT-AAATAAACAC--TACAAATTTCAATG-AACAATTACGATACTGTT--TATATACGCAAGCTGATGAGCGCAATA---------ATGAATATATGATCACAATGAATACAAAAACAATGAGTGTTGTATTAAACAAGCACTGTTGCTAGGGT----AGATCACTCTGTGG--TAA----------CGT------------------TA------------------AATGT--CG------------------C-----A------------------ACCGACGCTA-----NATGTCGCAACGCTGACA
Reference ( gi|6 ) : TCTTTCAGTCTT--G-AGTGTGCTT-A-------------------CTCATG-TTCTATATACTTGCTCCTATACACA-ATCGTCCATGTTTATTACCTTTCGCTTGTTTTCGGTACAGTACCCTGTACCACAGGTGACCAATATAGTGACCCTTT---TAATGTTAAAATT---------AAACTGTACATTTGCA-ATCATTTCAAGAATGAATGAATGTCGAA----ACATACCGT----CAAACACCATTTACATT-AAAACAAACATTTACAAAGAA---AGAAAAAGCTGCATTCA------AAATAC-----AA------AT--------------------AA---------------TC---------------GT------C--GC--ACCGG-------------ACATTATGAGTATTGTAT-AAATAAACAC--TACAAATTTCAGTA-AACAATTATGATACTGTT--TATATACGCAAGCGAATGAGTGCAATA---------ATAAATATATGATCACAATGAATACAAAAACACTGAGTGTTGTATTAAACAAGCACTTTTGCTAGGGT----AGCTCACTCTGTGG--TAA----------CAT------------------TA------------------AATGT--CG------------------C-----A------------------ACCGACGTTG-----TATATCGCAACGCTGACA
gi|2 : TCTTTCAGTCTT--G-AGTGCGCTT-A-------------------CTCCTG-CTCTATATACTTGCTCTGATACACA-ACCGTCTATATTTCGTAC-TTTCACTTCTTTTCTGTACAATCTCCTGTACCACAGATGATCAATATAGTAATCCAAT---TAATGTTAAAATT---------AAGCTTTATCTTTGCA-AACATTTAAAGTATGAATGAATGTCGAC----ACATACCGT----AAAACACCATTTACATT-AAAACAAACATTTACAAAGAA---AGAAAAAGCTGCATTTA------ACACAC-----AA------AC--------------------AA---------------TC---------------AT------A--ATTTACCGGCTCGTTGCATGCTACATCATTAGTGTTGTTT-AAATGTACAC--TGCGCATTTCA-TAGAACAATTACGAAACTGTT--AA-ATACGCAAGCTGATGAGCGCAATA---------ATACATACATGGTCACAATGAATACAAAAACAATGAGTGATGTATTAAACAAGCACTGTTGCTAGGGT----AGATCACTC--TGG--TAA----------CAT------------------TA------------------AATGT--CGCATCGACGCTAAATGTCAC-----A------------------ACCGACGTTA-----TATGTCGCAACGCTGACA
gi|3 : TCTTTCACTCTG--G-AGTCTGCTA-A-------------------CACATG-TTCTATATACTTGCTTCTATACACA-ACCGTCCATATTTCTTACATTTCGCTTGTTTT------AGT------TA-CAC----------TATAGTGACCATTT---TAATGTTAAAATT---------ATATTGTGCCTTTACA-AACATTTAAAGAATGAATGAATGTCAAC----ACATACCGT----AAAACACCGTTTACATT-AAAACAAACACTTACAAAGAA---AGAAAAAGCTCCATTAA------ACATAC-----AA------AT--------------------AATCATATTTTTCGGACTC---------------GT------C--GC--ACGGG-------------ACTTTATTAGTACTGTTTAAAATAAACAC--TTCAAACTTCGTTG-AACAATTACGATACTGTT--TATATACGCAAGCTGATGAGTGCAATACTATTTAATATATATATATGATCACAATGAATACAAAAATAATGAGTGTTGTATTAAACAAGCACTGTTGCTAGGGT----AAATCACTC--TGG--TAA----------CGTTAAATGTCTCATCGACGCTA------------------AATGT--CA------------------C-----A------------------ACCGACATTA-----TATGCGGCAACGCTGACActaacgct
gi|10 : TCTTTCATTCTG--G-AGTGTGCTT-ACACATGCTCTATATTCTTACTCATG-TTCTATATACTTGCTCCGATACAAA-ACCGTCCAAATTTCTTACCTTTAGCTAGTTTTCGTTACAGTACTCTGTACCACAGGTGACCGATATAGTGACCCGTT---TAccaacgct
gi|11 : TCTTTCATTCTA--G-ATTGTGCTT-A-------------------CTCGTG-TTCTATATACTTGCTCCGATACAAA-ACCGTCCATAATTCTTACCTTTCGCTTGTTTTCGGTACAGTACTTTGAACCACAGGTGACCAnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnccccccccccgacccccctaaaattaaaacgctcctacacccatgagtatatgatcacaatgaatgaaaaaacaatgagtactgtattaaacaagcactgttgctagggtaggtcactctgtggtaacgttaaatgtcgcatcgacgctaaatgtcgcatccgacgttatatacgcacgttatatacgctgacacca
gi|23 : TCTTTCATTCTG--G-AGTGTGCTT-A-------------------CTCATG-TTCTATATACTTGCTCCGATACAAA-ACCGTCCATATGTCTTA-CTTTCGCTTGTTTT------------CTGTACCACTGGTGACCAATATAATGACCCGTT---TAATGTTtttatacccgttcatacatacacgtttannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnatctccccctcaataattaaaatgttcctacatccatgaatatatgattacaatgaatacagaaaaaattaatattgtattaagctagcattattgctaggttggatcactttgtagtaacgttaaatgttgcaccgacgctcaatgtcgcaaccgacgttatatgtcgcaacgttgacaccaacgct
gi|22 : TCTTTCATTCTG--G-AGTGTGCTT-A-------------------CTCATG-TTCTATATACTTGTTGCGAAACAAACAT-GTACATGTTTCTTACC----------TTTCGGTACATTACCCTGTACCATAGGTGACCAATATAGTGACCCGTT---TAATGTc
gi|12 : TCTTTCATTCTG--G-ATTGTGCTTTG-------------------CTCATG-TTCTATATACTTCCTCCGATACAAA-ACCGT------------CCTCTCGCTTGTTTTCAGT--AG----------CACAGGTGACCAATATAGTGAACCGTT---c
gi|14 : TCTTTCATTCTG--G-AGTGTGCTT-A-------------------TTCATG-TTCTGTATACTTTCTCCGATACAAA-ACCATCCATATTTCTTACCTTGCGTTaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntgcccccaattattaaaacacccatgaatatatgatcacaatgaatacaaaaccaatgagtcttatattaaaaaagtactcttgctagggtagaaagatcactctgtgttaacgtttattgtcgcacccaagctaaatgtcgcaaccgacgatatatgtcgcaactctgacactaacgca
gi|15 : TCTTTC-----T--GCAGTGTGCTT-A-------------------CTCATGATTCTATATACTTGTTCCGATACAAA-ACCGACAATATTTCTTACCTTTCGCTTGTTTTCGGTACAGTAAACTGTnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnccccccccctcccccatccccaattaattaaaaagctcacacatccatgaatatattatcacaatgaatacaaacaagcactcttgctagggtagatcactctgtggtaacattaaatgtcgcatcgaaaccgatattatatg
gi|28 : ttTCTTTC-GTTTT--GGAGTGTGTTT-A-------------------CTCATG-TTTTATATACTTGCTCCAATACACA-ACCGTCCATAATTCTTACATTTCGCTTGTTTCCAATATAtactcacgttgccaccatccccaataacttaaacgctcctgcacccatgaatatatgatcacaacgaattcaaaaacaatcagtgtactcttgctacggtagacgactctgtggtaacgttaattgtcgcatctatggtaaatgtcgcaaccgacatca
gi|19 : CTCTAATTCTG--G-AGTGTGATT-T-------------------CTCATA-TTCTATATACATGCTCCTATACAAA-ACCGTCCATATTTCTTACCTTTCACTTGTTTTCGGCACAGTACACT-TACAACAGGTGACCAATATAGTGACCCGTC---TAATGTTacga
gi|13 : CTCTTATTCTG--G-AGTGTGTTT-A-------------------CTCATG-TTCTATAAACTTGCTCAGATACAAA-ACCGTCCATATTTCTTGCCTTTCACTTGTATTCAGAACA-----------------------ATATAGTTACCCGTT---TAATGTTCAGATT---------Aca
gi|20 : CTTTCA-TCTTTGG-AGAATGCAT-A-------------------ATCATC-TTCTATATACTTTCTCCGATACAAA-ACCGTCCATATTTCTTATCTTTCGCTTGTTTTCGGCACAGTACTCTGTTCCAAAGGTGACCAATATCGTGATCCTTT---Tnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnagttcccctcataatttaaacgctcctttacccaagagtatgtgatcacaatgaatacaaaaacagtgagtgttgtattaaacaagcatcgctgctagggtacatcgctctgtggtaacgttaaatgtcgcaccgacgcttaatgtcgcaacgt
gi|4 : TTTCAGTCTT--G-AGTGTGTTA-A-------------------CTCCTG-TTCTATAAACTTGCTCCTAAACTCA-ACTGTACATAGTTCTTACATTTCGCTTGTTTTCGTTGCAGTACCCTGTACCACAGCTGACCAATATAGTGAATCTTT---TAATGTTAGATTT---------AAACTGTATCTTTGCA-AACATTTAAAGAAAGAATGGATGCTGAC----ATTTACTGT----AAAACACCATTTACATTAAAAAAAAACACTTACAAAGAA---AGAAAAAGCTGCATTCAGTTTACAAATG------AA------AT--------------------AATTATAATTCACGGGCTC---------------GT------C--CC--ACGGG-------------ACATTGTTATCATTGTTT-AAATAA-------ACAAATTTCAATG-AATAATTACGATACTGTTTATATATACGCAAGCGCATGAGCACAATA---------ATAAATATATGACCATAATGAATACAGAACCAATGAGTGATGTATTAAACAA--------GCTAGAGT----AGATCACTCTGTGT--TAATGATAAATGTCGC------------------TA------------------AATGT--TG------------------C-----A------------------ACTGAATTTA-----TATGTCGCAACGCTGACA
gi|21 : TTTCATTCTG--G-AGTGTGCTT-A-------------------CTCATG-TTTTATATACTTTCTCCGATACAAA-A-CGTCAATATTTCTTACCGTTCGCTTGTTTTCAGTACAGTACTCTGTACCACAGGTGACCAATACAGTGACCCGTT---Tcaaacgct
gi|9 : aTTCAGTCTT--G-ATTGTGCTTTA-------------------CACATG-TTCTATATATTTGCTCCTATACACA-ACCGTCCATATCTCTTAACTTTCGCTTGTTTTCGGTACTGTCCTCTGTACCGCAGGTGATTAATATAGTGACCATTT----AATGATAAAGTT---------AAACTGTATCTTTGCATGTC-TTAAAAGAATGAATGAATGTAGAC----ACATACCGT----AAAACACCGTTTACATT-AAAACAAACATTTACAAAGAA---AGAAAAAACTGCATTCA------ACATAC-----AA------ATGAAATAATCATAATTTACCGGA---------------TC---------------GT------T--GC--AGGGG-------------ACATTATTAGTATTGTTT-AAATATACAC--AACACGTGTCAATG-AACAATTACGATAATGTC--TATATACGCAAGCTGATGAGTGCAATA---------ATAAATATATTATAACAATGAATATAAAAATAATGAGTGTTGTA
gi|5 : TATATACTTGTTGCTATACACT-ATCGTCCATATTTCTTACCTTTCGCTTGCTTTCGGTACAGTACCCTGTACCACAGTTGACCAATTTAGTGACTCTTT---TAATGTTTAAATT---------AAACTGTATCTTTTCA-ACCATTTAAAGAATGAACCAATATCGAC----ACATACCGTAGAACAAACACCATTTACATT-AAATCAAACATGTACAAAGAA---ATAAAAAGGTGTATTCA------ACATACAAATGAA------AT--------------------AA---------------TC---------------ATAATTTACGGGC--TCATG-------------GCATTTTTAGCATTGTTT-AAATATATATCATACAA--TTCAAAG-AACAATTTCGATACTG-T--TATATACGTAAGCGGGTGAGCGCAATA---------GTAAATATATGATCACAATGAATACAAAAACAACGAGTGTTGTATTAAACAAGCACTCTTGCTAGGGT----CGATCACTCTGTGG--TAA----------TGT------------------TA------------------AATGT--CG------------------C-----ACCGGCGCGAAATGTCGCTACCGACGTTAGAGTTTATGTCGTAACGCTGACA
gi|8 : TATATACTTACTCCGTTATACA-ACGGTCCATATTTCTTAACTTTCGCTTGTTTTCGGTACAGTACCCTGTACCACAGGTGATCAATATAGTGACGCTTTAAATAACGTT-AAATT---------AAACTGTATATTTGCA-AACATTTAAAGAAGAAATGAACGTCGTC----ACATACCGT----AGAACAC------CATT-AAAACAAACATTTAGAAAGAA---AGAAAAAACTGCATTCA------ACATAC-----AAAAAATCAT--------------------AATTTACGGGC------TC---------------GT------C--GC--ACGGG-------------ACATTATTAGTATTGTTT-AAATAAACAC--TACAAATTTC-----AAC------------------ATATACGCACGCTGATGAGCGTA----------------------GATCACAATGAATACAAAAACAATGAGTGTTGTATTAAACAAGCACTGTTGCTAGGGT----AGATCATTCCATGG--TAA----------TGT------------------TA------------------AATAT--TG------------------C------------------------ACCAAAGCTA-----AATGTCACAACccaacgcta
gi|7 : TATATACTTACTCCGTTATACA-ACGGTCCATATTTCTTAACTTTCGCTTGTTTTCGGTACAGTACCCTGTACCACAGGTGATCAATATAGTGACGCTTTAAATAACGTT-AAATT---------AAACTGTATATTTGCA-AACATTTAAAGAAGAAATGAACGTCGTC----ACATACCGT----AGAACAC------CATT-AAAACAAACATTTAGAAAGAA---AGAAAAAACTGCATTCA------ACATAC-----AAAAAATCAT--------------------AATTTACGGGC------TC---------------GT------C--GC--ACGGG-------------ACATTATTAGTATTGTTT-AAATAAACAC--TACAAATTTC-----AAC------------------ATATACGCACGCTGATGAGCGTA----------------------GATCACAATGAATACAAAAACAATGAGTGTTGTATTAAACAAGCACTGTTGCTAGGGT----AGATCATTCCATGG--TAA----------TGT------------------TA------------------AATAT--TG------------------C------------------------ACCAAAGCTA-----AATGTCACAACcgacgtaatatgtc
gi|18 : AAGGTTAAAACTGACCTTTTAAAACTGTATTGTTGCA-AACATTTAATGAACGAATGGGTG--GTATTTTACATACCGT----AAAACACCATTTACATT-AAAACAGACATTTGCAAACAAAGTAGAAAAAGCTGCTTTCA------ACATcgacgtaatatgtc
gi|16 : ACACCATTTACATT-AAAACAAACATA-ACAAAGAA---AGAAAAAGCTGCATTCA------ACATAC-----AA------AT--------------------AA---------------TCATAATTTACGGGCTCGT------T--GC--ACGGG-------------ACATTATTAGTACTGTTT-AAATAAACAC--TACACATTTCAATG-AATAATTACGACAATGTT--TATATACGCAAGCTCATGAGCGCAATA---------ATAAATATATGA
gi|15 : taatgaattcgacTGCACCC---------ATGAATATATGATCACAACGAATTCAAAAACAATCAGTGT--------------ACTCTTGCTACGGT----AGACGACTCTGTGG--TAA----------CGT------------------TA------------------ATTGT--CG------------------C------------------------ATCTATGGTA-----AATGTCGCAA--CCGACA
gi|10 : tttctttctgcagtgtgcttactcatgattctatatacttgttccgatacaaaaccgacaatatttcttacctttcgcttgttttcggtacagtaaactgttactcacgttgccaccatccccaataacttaaacgctcc---------ATGAGTATATGATCACAATGAATGAAAAAACAATGAGTACTGTATTAAACAAGCACTGTTGCTAGGGT----AGGTCACTCTGTGG--TAA----------CGT------------------TA------------------AATGT--CG------------------C------------------------ATCGACGCTA-----AATGTCGCAtca
gi|11 : tctttcattctggagtgtgcttacacatgctctatattcttactcatgttctatatacttgctccgatacaaaaccgtccaaatttcttacctttagctagttttcgttacagtactctgtaccacaggtgaccgatatagtgacccgtttannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnccccccccccgacccccctaaaattaaaacgctcctacaccc---------ATGAATATATGATTACAATGAATACAGAAAAAATTAATATTGTATTAAGCTAGCATTATTGCTAGGTT----GGATCACTTTGTAG--TAA----------CGT------------------TAAATGTTGCACCGACGCTCAATGT--CG------------------C-----A------------------ACCGACGTTA-----TATGTCGCAACGTTGACAtccgacgttatatacgcacgttatatacgctgacacca
gi|12 : tctttcattctagattgtgcttactcgtgttctatatacttgctccgatacaaaaccgtccataattcttacctttcgcttgttttcggtacagtactttgaaccacaggtgaccatttatacccgttcatacatacacgtttannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnatctccccctcaataattaaaatgttcctacatcc---------ATGAATATATGATCACAATGAATACAAAACCAATGAGTCTTATATTAAAAAAGTACTCTTGCTAGGGTAGAAAGATCACTCTGTGT--TAA----------CGTTTATTGTCGCACCCAAGCTA------------------AATGT--CG------------------C-----A------------------ACCGACGATA-----TATGTCGCAACTCTGACAccaacgct
gi|17 : tctttcattctggattgtgctttgctcatgttctatatacttcctccgatacaaaaccgtcctctcgcttgttttcagtagcacaggtgaccaatatagtgaaccgttaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntgcccccaattattaaaacaccc---------ATGAATATGTGATCACAATGAATACAAAAACAGTGAGTGTTGTATTAAACA--------------GAT----AGATCGCTCTGTGGTTTAA----------CGT------------------AA------------------AATGT--CG------------------C------------------------ACCGACGCTA-----AATGTCGCAACGCTGACActaacgca
gi|14 : acattaataaaatcatttaaaggaggtatacttgatgacgaattatttattgaaacgctcctacaccc---------ATGAATATATTATCACAATGAATACAA---------------------ACAAGCACTCTTGCTAGGGT----AGATCACTCTGTGG--TAA----------CAT------------------TA------------------AATGT--CG------------------CATCGAA------------------ACCGATATTA-----TATcttacgcta
gi|30 : tctttcattctggagtgtgcttattcatgttctgtatactttctccgatacaaaaccatccatatttcttaccttgcgttnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnccccccccctcccccatccccaattaattaaaaagctcacacatcc---------ATGAATATATGTTTACAATGAATACATAAACAATA-----TCTATTAAACAAGg
gi|13 : ccacatgaaaagttccttcatccAGTATGTGATCACAATGAATACAAAAACAGTGAGTGTTGTATTAAACAAGCATCGCTGCTAGGGT----ACATCGCTCTGTGG--TAA----------CGT------------------TA------------------AATGT--CG------------------C------------------------ACCGACGCTT-----AATGTCGCAACG
gi|25 : ctcttattctggagtgtgtttactcatgttctataaacttgctcagatacaaaaccgtccatatttcttgcctttcacttgtattcagaacaatatagttacccgtttaatgttcagattannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnagttcccctcataatttaaacgctcctttacccaagATGAATACAAAAAAA-TGAGTGTTGTATTAAACAAGCACTGTTGCTAGGGT----AGATCCCTCTGTGC--TAA----------CAT------------------TA------------------AATGT--CG------------------C-----A------------------ACt
gi|27 : cctccccttccccccagtaattataacactcatacatccTGAGTTTTGTATTAAACAAGCACTGTTACTATGGT----AAATCACTCTGTGG--TAA----------CGT------------------TA------------------AAAGT--CG------------------C------------------------ACAGACGCTA-----AATGTCACAAGGCTGACAgct
gi|1 : aCACTGTTGCTAGGAT----ATATCAATCTG--G--TAA----------CGT------------------TA------------------AATGT--TG------------------C-----A------------------ACTGACGTTA-----TATGTCGTAACGCTGACActaacg
gi|24 : ----AGATTACTCTGTGG--TAA----------CGT------------------TA------------------AATGT--CG------------------CGTCGAA------------------ACCGATGccaacgctaaatgtcacacctttaacgcgtcatgtcgaaagatttgtacaaccggtatatgtcgcgactgtggggaccgctggttgaaatgccttatattcgatgtgctgattcacttattttgctgagcgcatggccaacaaattggttacaggtacatatgtttattgctaacatacctacggcatattcaacagaagttgtgtttatatttgtttacccatttaaatcaaggcatatcataagaaggcttcctaaagaaaatagctaaataccggacagacggactgtcagagacagacataccgcatcagacaagacgagacttcgccacagcagatgtgcaaattaaaaaatgacaaatcatttatcttctccattttatcattgctggtacgtccataataatcgatgcaatgtaactatatgtttgtgccgatgaaccaatgcgacatctagagttggaatcgcgatatataccagtggtacgaatcttgcgatatatagtgttgtataaagcggcatattgttttgcgacaatttagcgttagttgcgacattgaacgcaagtcttgtgacatataccattgattgtgccattcagcgccgatgtgtcatttaacgttgccacacactcaaatattaa
gi|1 : annnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnTGTGG--CAA----------CGT------------------TA------------------AATGA--CA------------------C------------------------ATCGGCGCTG-----AATGGCACAAataactattagg
gi|32 : cactgttgctaggatatatcaatctggtaacgttaaatgttgcaactgacgttatatgtcgtaacgctgacaccaacgctaaatgtcacacctttaacgcgtcatgtcgaaagatttgtacaaccggtatatgtcgcgactgtggggaccgctggttgaaatgccttatattcgatgtgctgattcacttattttgctgagcgcatggccaacaaattggttacaggtacatatgtttattgctaacatacctacggcatattcaacagaagttgtgtttatatttgtttacccatttaaatcaaggcatatcataagaaggcttcctaaagaaaatagctaaataccggacagacggactgtcagagacagacataccgcatcagacaagacgagacttcgccacagcagatgtgcaaattaaaaaatgacaaatcatttatcttctccattttatcattgctggtacgtccataataatcgatgcaatgtaactatatgtttgtgccgatgaaccaatgcgacatctagagttggaatcgcgatatataccagtggtacgaatcttgcgatatatagtgttgtataaagcggcatattgttttgcgacaatttagcgttagttgcgacattgaacgcaagtcttgtgacatataccattga--TAA----------CGT------------------TA------------------A-TGT--CG------------------C-----A-------------------CTGACGCTA-----AATGTCGCAACcactcaaatattaa
gi|26 : tggttttgcgacacttA----------CGC------------------TA------------------AATGTTTCG------------------C-----A------------------ACTGACGTTA-----TATGTCGCAAGACTGAC
2 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|29 ): ANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCCACTTCACCCATAATTGAAAAGTTCCAATATCC
Unaligned ( gi|31 ): TTATGTCGCAAGCTTTGTACAGCCGGTATATGTTGCGACTGTGGGGATCGCTGATTGAAA
Alignments
lowQualScore : 11111111111111111111111111111111111111111
lowQualScore : 2222222222222222222 111111111 11111 55555555555555555555555555555555555555555 111111 111 111111111 11111111111 111111111111111111 222222222222222222 11111111
lowQualScore : 2 2222222222222222222 2 1 0 2 2 1 888 4 666666666 0 7 8888 8888 9 4 777 11111 11111111111111111111111111111111111111111 66 222222 4 66 33 0 1 000 1 000000000 1 4444 00000000000 22 22 333 7777777777 222222222222222222 555555555555555555 22 99999999 1 1
lowQualScore : . ................... . . . . . . ... . ......... . . .... .... . . ... ..... ......................................... .. ...... . .. .. . . ... . ......... . .... ........... .. .. ... .......... .................. .................. .. ........ . .
lowQualScore : 4 9999999999999999999 4 8 4 8 4 0 222 9 000000000 1 2 5555 5555 6 0 000 11111 77777777777777777777777777777777777777777 11 888888 4 11 00 9 1 888 9 000000000 2 7777 00000000000 99 66 222 6666666666 888888888888888888 777777777777777777 44 11111111 0 9
consensus : TCTTTCAT-TCTGGAGTGTGCTT-------------------ACTCATG-TTCTATATACTTGCTCCGATACAAAACCGTCCATATTTCTTACCTTTCGCTTGTTTTCGGTACAGTACCCTGTACCACAGGTGACCA-ATATAGTGACCCGTT---TAATGTTAAAATT---------AAACTGTATCTTTGCAAACATTTAAAGAATGAATGAATG----TCGACACATACCGTA----AAACACCATTTACATT-AAAACAAACATTTACAAAGAA---AGAAAAAGCTGCATTCAACATAC-----AAA------T-----------AATT------------C------TCGTCGC--ACGGG------ACATTATTAGTATTGTTT-AAATAAACAC--TACAAATTTCAACGAACAATTACGATACTGTT--TATATACGCAAGCTGATGAGCGCAATA---------ATGAATATATGATCACAATGAATACAAAAACAATGAGTGTTGTATTAAACAAGCACTGTTGCTAGGGTAGA----TCACTCTG-----------TG--GT--A---A----------CGTT------------------AA------------------ATGT--CGC-----A--ACCGACGCTANA-TGTCGCAACGCTGACA
Reference ( family-2969 ) : TCTTTCAT-TCTGGAGTGTGCTT-------------------ACTCATG-TTCTATATACTTGCTCCGATACAAAACCGTCCATATTTCTTACCTTTCGCTTGTTTTCGGTACAGTACCCTGTACCACAGGTGACCA-ATATAGTGACCCNTT---TAATGTTAAAATT---------AAACTGTATCTTTGCAAACATTTAAAGAACGAATGAATG----TCGACACATACCGTA----AAACACCGTTTACATT-AAAACAAACATTTACAAAGAA---AGAAAAAGCTGCATTCAACATAC-----AAA------T-----------AATT------------C------TCGTCGC--ACGGG------ACATTATTAGTATTGTTT-AAATAAACAC--TACAAATTTCAATGAACAATTACGATACTGTT--TATATACGCAAGCTGATGAGCGCAATA---------ATGAATATATGATCACAATGAATACAAAAACAATGAGTGTTGTATTAAACAAGCACTGTTGCTAGGGTAGA----TCACTCTG-----------TG--GT--A---A----------CGTT------------------AA------------------ATGT--CGC-----A--ACCGACGCTANA-TGTCGCAACGCTGACA
gi|1 : CACTGTTGCTAGGATATA----TCAATCTG---------------GT--A---A----------CGTT------------------AA------------------ATGT--TGC-----A--ACTGACGTTATA-TGTCGTAACGCTGACA
gi|1 : ----------CGTT------------------CA------------------ATGT--CGC-----A--ACTAACGCTAAATTGTCGCAAccaacgctaaatgtcacacctttaacgcgtcatgtcgaaagatttgtacaaccggtatatgtcgcgactgtggggaccgctggttgaaatgccttatattcgatgtgctgattcacttattttgctgagcgcatggccaacaaattggttacaggtacatatgtttattgctaacatacctacggcatattcaacagaagttgtgtttatatttgtttacccatttaaatcaaggcatatcataagaaggcttcctaaagaaaatagctaaataccggacagacggactgtcagagacagacataccgcatcagacaagacgagacttcgccacagcagatgtgcaaattaaaaaatgacaaatcatttatcttctccattttatcattgctggtacgtccataataatcgatgcaatgtaactatatgtttgtgccgatgaaccaatgcgacatctagagttggaatcgcgatatataccagtggtacgaatcttgcgatatatagtgttgtataaagcggcatattgttttgcgacaatttagcgttagttgcgacattgaacgcaagtcttgtgacatataccattgattgtgccattcagcgccgatgtgtcatttaacgttgccacacactcaaatattaa
gi|1 : cactgttgctaggatatatcaatctggtaacgttaaatgttgcaactgacgttatatgtcgtaacgctgacaccaacgctaaatgtcacacctttaacgcgtcatgtcgaaagatttgtacaaccggtatatgtcgcgactgtggggaccgctggttgaaatgccttatattcgatgtgctgattcacttattttgctgagcgcatggccaacaaattggttacaggtacatatgtttattgctaacatacctacggcatattcaacagaagttgtgtttatatttgtttacccatttaaatcaaggcatatcataagaaggcttcctaaagaaaatagctaaataccggacagacggactgtcagagacagacataccgcatcagacaagacgagacttcgccacagcagatgtgcaaattaaaaaatgacaaatcatttatcttctccattttatcattgctggtacgtccataataatcgatgcaatgtaactatatgtttgtgccgatgaaccaatgcgacatctagagttggaatcgcgatatataccagtggtacgaatcttgcgatatatagtgttgtataaagcggcatattgttTG-----------TG--GC--A---A----------CGTT------------------AA------------------ATGA--CAC--------ATCGGCGCTGAA-TGGCACAAcaagtcttgtgacatataccattgattgtgccattcagcgccgatgtgtcatttaacgttgccacacactcaaatattaa
gi|10 : cactgttgctaggatatatcaatctggtaacgttaaatgttgcaactgacgttatatgtcgtaacgctgacaccaacgctaaatgtcacacctttaacgcgtcatgtcgaaagatttgtacaaccggtatatgtcgcgactgtggggaccgctggttgaaatgccttatattcgatgtgctgattcacttattttgctgagcgcatggccaacaaattggttacaggtacatatgtttattgctaacatacctacggcatattcaacagaagttgtgtttatatttgtttacccatttaaatcaaggcatatcataagaaggcttcctaaagaaaatagctaaataccggacagacggactgtcagagacagacataccgcatcagacaagacgagacttcgccacagcagatgtgcaaattaaaaaatgacaaatcatttatcttctccattttatcattgctggtacgtccataataatcgatgcaatgtaactatatgtttgtgccgatgaaccaatgcgacatctagagttggaatcgcgatatataccagtggtacgaatcttgcgatatatagtgttgtataaagcggcatattgttttgcgacaatttagcgttagttgcgacattgaacgcaagtcttgtgacatataccattgaTCTTTCAT-TCTGGAGTGTGCTTACACATGCTCTATATTCTTACTCATG-TTCTATATACTTGCTCCGATACAAAACCGTCCAAATTTCTTACCTTTAGCTAGTTTTCGTTACAGTACTCTGTACCACAGGTGACCG-ATATAGTGACCCGTT---TAcactcaaatattaa
gi|10 : ---------ATGAGTATATGATCACAATGAATGAAAAAACAATGAGTACTGTATTAAACAAGCACTGTTGCTAGGGTAGG----TCACTCTG-----------TG--GT--A---A----------CGTT------------------AA------------------ATGT--CGC--------ATCGACGCTAAA-TGTCGCAnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnccccccccccgacccccctaaaattaaaacgctcctacacccatgagtatatgatcacaatgaatgaaaaaacaatgagtactgtattaaacaagcactgttgctagggtaggtcactctgtggtaacgttaaatgtcgcatcgacgctaaatgtcgcatccgacgttatatacgcacgttatatacgctgacacca
gi|11 : tctttcattctggagtgtgcttacacatgctctatattcttactcatgttctatatacttgctccgatacaaaaccgtccaaatttcttacctttagctagttttcgttacagtactctgtaccacaggtgaccgatatagtgacccgtttannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnccccccccccgacccccctaaaattaaaacgctcctacacccTCTTTCAT-TCTAGATTGTGCTT-------------------ACTCGTG-TTCTATATACTTGCTCCGATACAAAACCGTCCATAATTCTTACCTTTCGCTTGTTTTCGGTACAGTACTTTGAACCACAGGTGACCATTTAT----ACCCGTT---CAtccgacgttatatacgcacgttatatacgctgacacca
gi|11 : ---------ATGAATATATGATTACAATGAATACAGAAAAAATTAATATTGTATTAAGCTAGCATTATTGCTAGGTTGGA----TCACTTTG-----------TA--GT--A---A----------CGTT------------------AA------------------ATGT--TGC--------ACCGACGCTCAA-TGTCGCAACtacatacacgtttannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnatctccccctcaataattaaaatgttcctacatccatgaatatatgattacaatgaatacagaaaaaattaatattgtattaagctagcattattgctaggttggatcactttgtagtaacgttaaatgttgcaccgacgctcaatgtcgcaaccgacgttatatgtcgcaacgttgacaccaacgct
gi|12 : tctttcattctagattgtgcttactcgtgttctatatacttgctccgatacaaaaccgtccataattcttacctttcgcttgttttcggtacagtactttgaaccacaggtgaccatttatacccgttcatacatacacgtttannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnatctccccctcaataattaaaatgttcctacatccTCTTTCAT-TCTGGATTGTGCTTT------------------GCTCATG-TTCTATATACTTCCTCCGATACAAAACCGT------------CCTCTCGCTTGTTTTCAGT--AG----------CACAGGTGACCA-ATATAGTGAACCGTT---cgacgttatatgtcgcaacgttgacaccaacgct
gi|12 : ---------ATGAATATATGATCACAATGAATACAAAACCAATGAGTCTTATATTAAAAAAGTACTCTTGCTAGGGTAGAAAGATCACTCTG-----------TG--TT--A---A----------CGTTTATTGTCGCACCCAAGCTAA------------------ATGT--CGC-----A--ACCGACGATATA-TGTCGCAACTCTGACAaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntgcccccaattattaaaacacccatgaatatatgatcacaatgaatacaaaaccaatgagtcttatattaaaaaagtactcttgctagggtagaaagatcactctgtgttaacgtttattgtcgcacccaagctaaatgtcgcaaccgacgatatatgtcgcaactctgacactaacgca
gi|13 : tctttcattctggattgtgctttgctcatgttctatatacttcctccgatacaaaaccgtcctctcgcttgttttcagtagcacaggtgaccaatatagtgaaccgttaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntgcccccaattattaaaacacccCTCTTAT-TCTGGAGTGTGTTT-------------------ACTCATG-TTCTATAAACTTGCTCAGATACAAAACCGTCCATATTTCTTGCCTTTCACTTGTATTCA-----------------------GAACA-ATATAGTTACCCGTT---TAATGTTCAGATT---------Actaacgca
gi|13 : GAGTATGTGATCACAATGAATACAAAAACAGTGAGTGTTGTATTAAACAAGCATCGCTGCTAGGGTACA----TCGCTCTG-----------TG--GT--A---A----------CGTT------------------AA------------------ATGT--CGC--------ACCGACGCTTAA-TGTCGCAACGnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnagttcccctcataatttaaacgctcctttacccaagagtatgtgatcacaatgaatacaaaaacagtgagtgttgtattaaacaagcatcgctgctagggtacatcgctctgtggtaacgttaaatgtcgcaccgacgcttaatgtcgcaacgt
gi|14 : ctcttattctggagtgtgtttactcatgttctataaacttgctcagatacaaaaccgtccatatttcttgcctttcacttgtattcagaacaatatagttacccgtttaatgttcagattannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnagttcccctcataatttaaacgctcctttacccaaTCTTTCAT-TCTGGAGTGTGCTT-------------------ATTCATG-TTCTGTATACTTTCTCCGATACAAAACCATCCATATTTCTTACCTTGCGTTt
gi|14 : ---------ATGAATATATTATCACAATGAATACAAA---------------------CAAGCACTCTTGCTAGGGTAGA----TCACTCTG-----------TG--GT--A---A----------CATT------------------AA------------------ATGT--CGCATCGAA--ACCGATATTATA-TGnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnccccccccctcccccatccccaattaattaaaaagctcacacatccatgaatatattatcacaatgaatacaaacaagcactcttgctagggtagatcactctgtggtaacattaaatgtcgcatcgaaaccgatattatatg
gi|15 : tctttcattctggagtgtgcttattcatgttctgtatactttctccgatacaaaaccatccatatttcttaccttgcgttnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnccccccccctcccccatccccaattaattaaaaagctcacacatccTTTCTT-TCTGCAGTGTGCTT-------------------ACTCATGATTCTATATACTTGTTCCGATACAAAACCGACAATATTTCTTACCTTTCGCTTGTTTTCGGTACAGTAAACTGT
gi|15 : ---------ATGAATATATGATCACAACGAATTCAAAAACAATCAGTGT--------------ACTCTTGCTACGGTAGA----CGACTCTG-----------TG--GT--A---A----------CGTT------------------AA------------------TTGT--CGC--------ATCTATGGTAAA-TGTCGCAA--CCGACAtactcacgttgccaccatccccaataacttaaacgctcctgcacccatgaatatatgatcacaacgaattcaaaaacaatcagtgtactcttgctacggtagacgactctgtggtaacgttaattgtcgcatctatggtaaatgtcgcaaccgacatca
gi|16 : tttctttctgcagtgtgcttactcatgattctatatacttgttccgatacaaaaccgacaatatttcttacctttcgcttgttttcggtacagtaaactgttactcacgttgccaccatccccaataacttaaacgctcctgcacccAATGAAT-----TCGACACA----------------CCATTTACATT-AAAACAAACATA-ACAAAGAA---AGAAAAAGCTGCATTCAACATAC-----AAA------T-----------AATCATAATTTACGGGC------TCGTTGC--ACGGG------ACATTATTAGTACTGTTT-AAATAAACAC--TACACATTTCAATGAATAATTACGACAATGTT--TATATACGCAAGCTCATGAGCGCAATA---------ATAAATATATGAtca
gi|17 : t---------ATGAATATGTGATCACAATGAATACAAAAACAGTGAGTGTTGTATTAAACA--------------GATAGA----TCGCTCTG-----------TG--GTTTA---A----------CGTA------------------AA------------------ATGT--CGC-----A---CCGACGCTAAA-TGTCGCAACGCTGACA
gi|18 : acattaataaaatcatttaaaggaggtatacttgatgacgaattatttattgaaacgctcctacacccAAGGTTAAAACTGACCTTTTAAAACTGTATTGTTGCAAACATTTAATGAACGAATGGGTGGTATTT--TACATACCGTA----AAACACCATTTACATT-AAAACAGACATTTGCAAACAAAGTAGAAAAAGCTGCTTTCAACATcttacgcta
gi|19 : CTCTAAT-TCTGGAGTGTGATT-------------------TCTCATA-TTCTATATACATGCTCCTATACAAAACCGTCCATATTTCTTACCTTTCACTTGTTTTCGGCACAGTACACT-TACAACAGGTGACCA-ATATAGTGACCCGTC---TAATGTT
gi|2 : TCTTTCAG-TCTTGAGTGCGCTT-------------------ACTCCTG-CTCTATATACTTGCTCTGATACACAACCGTCTATATTTCGTAC-TTTCACTTCTTTTCTGTACAATCTCCTGTACCACAGATGATCA-ATATAGTAATCCAAT---TAATGTTAAAATT---------AAGCTTTATCTTTGCAAACATTTAAAGTATGAATGAATG----TCGACACATACCGTA----AAACACCATTTACATT-AAAACAAACATTTACAAAGAA---AGAAAAAGCTGCATTTAACACAC-----AAACAATCAT-----------AATTTACCGG------C------TCGTTGC--ATGCT------ACATCATTAGTGTTGTTT-AAATGTACAC--TGCGCATTTCATAGAACAATTACGAAACTGTT--AA-ATACGCAAGCTGATGAGCGCAATA---------ATACATACATGGTCACAATGAATACAAAAACAATGAGTGATGTATTAAACAAGCACTGTTGCTAGGGTAGA----TCACTCTGGTAACATTAAATGTCGC--ATCGA----------CGCT------------------AA------------------ATGT--CAC-----A--ACCGACGTTATA-TGTCGCAACGCTGACAca
gi|20 : CTTTCATCTTTGGAGAATGCAT-------------------AATCATC-TTCTATATACTTTCTCCGATACAAAACCGTCCATATTTCTTATCTTTCGCTTGTTTTCGGCACAGTACTCTGTTCCAAAGGTGACCA-ATATCGTGATCCTTT---Tctaacgct
gi|21 : TTTCAT-TCTGGAGTGTGCTT-------------------ACTCATG-TTTTATATACTTTCTCCGATACAAAAC-GTCAATATTTCTTACCGTTCGCTTGTTTTCAGTACAGTACTCTGTACCACAGGTGACCA-ATACAGTGACCCGTT---T
gi|22 : aTCTTTCAT-TCTGGAGTGTGCTT-------------------ACTCATG-TTCTATATACTTGTTGCGAAACAAACATGTACATGTTTCTTACC----------TTTCGGTACATTACCCTGTACCATAGGTGACCA-ATATAGTGACCCGTT---TAATGT
gi|23 : TCTTTCAT-TCTGGAGTGTGCTT-------------------ACTCATG-TTCTATATACTTGCTCCGATACAAAACCGTCCATATGTCTTA-CTTTCGCTTGTTTT------------CTGTACCACTGGTGACCA-ATATAATGACCCGTT---TAATGTTc
gi|24 : AGA----TTACTCTG-----------TG--GT--A---A----------CGTT------------------AA------------------ATGT--CGCGTCGAA--ACCGATGATAc
gi|25 : annnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnATGAATACAAAAA-AATGAGTGTTGTATTAAACAAGCACTGTTGCTAGGGTAGA----TCCCTCTG-----------TG--CT--A---A----------CATT------------------AA------------------ATGT--CGC-----A--ACactattagg
gi|26 : cctccccttccccccagtaattataacactcatacatcc---A----------CGCT------------------AA------------------ATGTTTCGC-----A--ACTGACGTTATA-TGTCGCAAGACTGACgct
gi|26 : ataacgcactgagT--G---A----------CGTT------------------AT------------------ATGT--CGC-----AAGACTGACGTTAAA-AGTCGCAACgttaaaagtcgcaaccaatagcgaaacaaacgttttcattcaaatcacgcttttataca
gi|27 : ataacgcactgagacgctaaatgtttcgcaacATGAGTTTTGTATTAAACAAGCACTGTTACTATGGTAAA----TCACTCTG-----------TG--GT--A---A----------CGTT------------------AA------------------AAGT--CGC--------ACAGACGCTAAA-TGTCACAAGGCTGACAcaatagcgaaacaaacgttttcattcaaatcacgcttttataca
gi|28 : TCTTTCGT-TTTGGAGTGTGTTT-------------------ACTCATG-TTTTATATACTTGCTCCAATACACAACCGTCCATAATTCTTACATTTCGCTTGTTTCCAATATActaacg
gi|3 : TCTTTCAC-TCTGGAGTCTGCTA-------------------ACACATG-TTCTATATACTTGCTTCTATACACAACCGTCCATATTTCTTACATTTCGCTTGTTTT------AGT------TA-CAC-----------TATAGTGACCATTT---TAATGTTAAAATT---------ATATTGTGCCTTTACAAACATTTAAAGAATGAATGAATG----TCAACACATACCGTA----AAACACCGTTTACATT-AAAACAAACACTTACAAAGAA---AGAAAAAGCTCCATTAAACATAC-----AAA------T-----------AATCATATTTTTCGGAC------TCGTCGC--ACGGG------ACTTTATTAGTACTGTTTAAAATAAACAC--TTCAAACTTCGTTGAACAATTACGATACTGTT--TATATACGCAAGCTGATGAGTGCAATACTATTTAATATATATATATGATCACAATGAATACAAAAATAATGAGTGTTGTATTAAACAAGCACTGTTGCTAGGGTAAA----TCACTC-------------TG--GT--A---A----------CGTT------------------AA------------------ATGT--CTC--------ATCGACGCTAAA-TGTCACAA--CCGACAacga
gi|30 : ---------ATGAATATATGTTTACAATGAATACATAAACAATA-----TCTATTAAACAAGttatatgcggcaacgctgacaccaacgct
gi|32 : ccacatgaaaagttccttcatccT--A---A----------CGTT------------------AA-------------------TGT--CGC-----A---CTGACGCTAAA-TGTCGCAAC
gi|4 : tggttttgcgacacttTTTCAG-TCTTGAGTGTGTTA-------------------ACTCCTG-TTCTATAAACTTGCTCCTAAACTCAACTGTACATAGTTCTTACATTTCGCTTGTTTTCGTTGCAGTACCCTGTACCACAGCTGACCA-ATATAGTGAATCTTT---TAATGTTAGATTT---------AAACTGTATCTTTGCAAACATTTAAAGAAAGAATGGATG----CTGACATTTACTGTA----AAACACCATTTACATTAAAAAAAAACACTTACAAAGAA---AGAAAAAGCTGCATTCAGTTTACAAATGAAA------T-----------AATTATAATTCACGGGC------TCGTCCC--ACGGG------ACATTGTTATCATTGTTT-AAATAA-------ACAAATTTCAATGAATAATTACGATACTGTTTATATATACGCAAGCGCATGAGCACAATA---------ATAAATATATGACCATAATGAATACAGAACCAATGAGTGATGTATTAAACAA--------GCTAGAGTAGA----TCACTCTG-----------TG--TT--A---ATGATAAATGTCGCT------------------AA------------------ATGT--TGC-----A--ACTGAATTTATA-TGTCGCAACGCTGACA
gi|5 : TATATACTTGTTGCTATACACTATCGTCCATATTTCTTACCTTTCGCTTGCTTTCGGTACAGTACCCTGTACCACAGTTGACCA-ATTTAGTGACTCTTT---TAATGTTTAAATT---------AAACTGTATCTTTTCAACCATTTAAAGAATGAACCAATA----TCGACACATACCGTAGAACAAACACCATTTACATT-AAATCAAACATGTACAAAGAA---ATAAAAAGGTGTATTCAACATAC-----AAA------TGA---------AATA------------A------TCATAATTTACGGGCTCATGGCATTTTTAGCATTGTTT-AAATATATATCATACAA--TTCAAAGAACAATTTCGATACTGTT---ATATACGTAAGCGGGTGAGCGCAATA---------GTAAATATATGATCACAATGAATACAAAAACAACGAGTGTTGTATTAAACAAGCACTCTTGCTAGGGTCGA----TCACTCTG-----------TG--GT--A---A----------TGTT------------------AA------------------ATGT--CGC--------ACCGGCGCGAAA-TGTCGCTACcaaacgct
gi|6 : TCTTTCAG-TCTTGAGTGTGCTT-------------------ACTCATG-TTCTATATACTTGCTCCTATACACAATCGTCCATGTTTATTACCTTTCGCTTGTTTTCGGTACAGTACCCTGTACCACAGGTGACCA-ATATAGTGACCCTTT---TAATGTTAAAATT---------AAACTGTACATTTGCAATCATTTCAAGAATGAATGAATG----TCGAAACATACCGTC----AAACACCATTTACATT-AAAACAAACATTTACAAAGAA---AGAAAAAGCTGCATTCAAAATAC-----AAA------T-----------AA---------------------TCGTCGC--ACCGG------ACATTATGAGTATTGTAT-AAATAAACAC--TACAAATTTCAGTAAACAATTATGATACTGTT--TATATACGCAAGCGAATGAGTGCAATA---------ATAAATATATGATCACAATGAATACAAAAACACTGAGTGTTGTATTAAACAAGCACTTTTGCTAGGGTAGC----TCACTCTG-----------TG--GT--A---A----------CATT------------------AA------------------ATGT--CGC-----A--ACCGACGTTGTA-TATCGCAACGCTGACAcgacgttagagtttatgtcgtaacgctgacaccaacgcta
gi|7 : TATATACTTACTCCGTTATACAACGGTCCATATTTCTTAACTTTCGCTTGTTTTCGGTACAGTACCCTGTACCACAGGTGATCA-ATATAGTGACGCTTTAAATAACGTTAAA-TT---------AAACTGTATATTTGCAAACATTTAAAGAAGAAATGAACG----TCGTCACATACCGTA----GAACACC------ATT-AAAACAAACATTTAGAAAGAA---AGAAAAAACTGCATTCAACATAC-----AAAAAATCAT-----------AATTTACGGG------C------TCGTCGC--ACGGG------ACATTATTAGTATTGTTT-AAATAAACAC--TACAAATTTCAAC----------------------ATATACGCACGCTGATGAGCGTA----------------------GATCACAATGAATACAAAAACAATGAGTGTTGTATTAAACAAGCACTGTTGCTAGGGTAGA----TCATTCCA-----------TG--GT--A---A----------TGTT------------------AAATATTGCACCAAAGCTAAATGT--CAC-----A--ACCGACGTAATA-TGTC
gi|8 : TATATACTTACTCCGTTATACAACGGTCCATATTTCTTAACTTTCGCTTGTTTTCGGTACAGTACCCTGTACCACAGGTGATCA-ATATAGTGACGCTTTAAATAACGTTAAA-TT---------AAACTGTATATTTGCAAACATTTAAAGAAGAAATGAACG----TCGTCACATACCGTA----GAACACC------ATT-AAAACAAACATTTAGAAAGAA---AGAAAAAACTGCATTCAACATAC-----AAAAAATCAT-----------AATTTACGGG------C------TCGTCGC--ACGGG------ACATTATTAGTATTGTTT-AAATAAACAC--TACAAATTTCAAC----------------------ATATACGCACGCTGATGAGCGTA----------------------GATCACAATGAATACAAAAACAATGAGTGTTGTATTAAACAAGCACTGTTGCTAGGGTAGA----TCATTCCA-----------TG--GT--A---A----------TGTT------------------AAATATTGCACCAAAGCTAAATGT--CAC-----A--ACCGACGTAATA-TGTC
gi|9 : TTCAG-TCTTGATTGTGCTTT------------------ACACATG-TTCTATATATTTGCTCCTATACACAACCGTCCATATCTCTTAACTTTCGCTTGTTTTCGGTACTGTCCTCTGTACCGCAGGTGATTA-ATATAGTGACC-ATT---TAATGATAAAGTT---------AAACTGTATCTTTGCATGTCTTAAAAGAATGAATGAATG----TAGACACATACCGTA----AAACACCGTTTACATT-AAAACAAACATTTACAAAGAA---AGAAAAAACTGCATTCAACATAC-----AAA------TGAAATAATCATAATT------------TACCGGATCGTTGC--AGGGG------ACATTATTAGTATTGTTT-AAATATACAC--AACACGTGTCAATGAACAATTACGATAATGTC--TATATACGCAAGCTGATGAGTGCAATA---------ATAAATATATTATAACAATGAATATAAAAATAATGAGTGTTGTA
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|29 ): ANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCCACTTCACCCATAATTGAAAAGTTCCAATATCC
Unaligned ( gi|31 ): TTATGTCGCAAGCTTTGTACAGCCGGTATATGTTGCGACTGTGGGGATCGCTGATTGAAA
Alignments
lowQualScore : 11111111111111111111111111111111111111111
lowQualScore : 2222222222222222222 111111111 11111 55555555555555555555555555555555555555555 111111 111 111111111 11111111111 111111111111111111 222222222222222222 111111
lowQualScore : 2 2222222222222222222 2 1 0 2 2 2 888 4 666666666 0 0 8888 8888 0 4 777 11111 11111111111111111111111111111111111111111 66 222222 4 66 77 0 1 000 1 000000000 1 4444 00000000000 22 22 333 7777777777 222222222222222222 555555555555555555 22 666666 22 1 1
lowQualScore : . ................... . . . . . . ... . ......... . . .... .... . . ... ..... ......................................... .. ...... . .. .. . . ... . ......... . .... ........... .. .. ... .......... .................. .................. .. ...... .. . .
lowQualScore : 4 9999999999999999999 4 8 4 8 4 2 222 9 000000000 1 9 5555 5555 8 0 000 11111 77777777777777777777777777777777777777777 11 888888 4 11 33 9 1 888 9 000000000 2 7777 00000000000 99 66 222 6666666666 888888888888888888 777777777777777777 44 777777 44 0 9
consensus : TCTTTCAT-TCTGGAGTGTGCTT-------------------ACTCATG-TTCTATATACTTGCTCCGATACAAAACCGTCCATATTTCTTACCTTTCGCTTGTTTTCGGTACAGTACCCTGTACCACAGGTGACCA-ATATAGTGACCCGTT---TAATGTTAAAATT---------AAACTGTATCTTTGCAAACATTTAAAGAATGAATGAATG----TCGACACATACCGTA----AAACACCATTTACATT-AAAACAAACATTTACAAAGAA---AGAAAAAGCTGCATTCAACATAC-----AAA------T-----------AATT------------C------TCGTCGC--ACGGG------ACATTATTAGTATTGTTT-AAATAAACAC--TACAAATTTCAACGAACAATTACGATACTGTT--TATATACGCAAGCTGATGAGCGCAATA---------ATGAATATATGATCACAATGAATACAAAAACAATGAGTGTTGTATTAAACAAGCACTGTTGCTAGGGTAGA----TCACTCTG-----------TG--GT--A---A----------CGTT------------------AA------------------ATGT--CGC-----AA--CCGACGCTANA-TGTCGCAACGCTGACA
Reference ( family-2969 ) : TCTTTCAT-TCTGGAGTGTGCTT-------------------ACTCATG-TTCTATATACTTGCTCCGATACAAAACCGTCCATATTTCTTACCTTTCGCTTGTTTTCGGTACAGTACCCTGTACCACAGGTGACCA-ATATAGTGACCCGTT---TAATGTTAAAATT---------AAACTGTATCTTTGCAAACATTTAAAGAATGAATGAATG----TCGACACATACCGTA----AAACACCATTTACATT-AAAACAAACATTTACAAAGAA---AGAAAAAGCTGCATTCAACATAC-----AAA------T-----------AATT------------C------TCGTCGC--ACGGG------ACATTATTAGTATTGTTT-AAATAAACAC--TACAAATTTCAACGAACAATTACGATACTGTT--TATATACGCAAGCTGATGAGCGCAATA---------ATGAATATATGATCACAATGAATACAAAAACAATGAGTGTTGTATTAAACAAGCACTGTTGCTAGGGTAGA----TCACTCTG-----------TG--GT--A---A----------CGTT------------------AA------------------ATGT--CGC-----AA--CCGACGCTANA-TGTCGCAACGCTGACA
gi|1 : CACTGTTGCTAGGATATA----TCAATCTG---------------GT--A---A----------CGTT------------------AA------------------ATGT--TGC-----AA--CTGACGTTATA-TGTCGTAACGCTGACA
gi|1 : ----------CGTT------------------CA------------------ATGT--CGC-----AA--CTAACGCTAAATTGTCGCAAccaacgctaaatgtcacacctttaacgcgtcatgtcgaaagatttgtacaaccggtatatgtcgcgactgtggggaccgctggttgaaatgccttatattcgatgtgctgattcacttattttgctgagcgcatggccaacaaattggttacaggtacatatgtttattgctaacatacctacggcatattcaacagaagttgtgtttatatttgtttacccatttaaatcaaggcatatcataagaaggcttcctaaagaaaatagctaaataccggacagacggactgtcagagacagacataccgcatcagacaagacgagacttcgccacagcagatgtgcaaattaaaaaatgacaaatcatttatcttctccattttatcattgctggtacgtccataataatcgatgcaatgtaactatatgtttgtgccgatgaaccaatgcgacatctagagttggaatcgcgatatataccagtggtacgaatcttgcgatatatagtgttgtataaagcggcatattgttttgcgacaatttagcgttagttgcgacattgaacgcaagtcttgtgacatataccattgattgtgccattcagcgccgatgtgtcatttaacgttgccacacactcaaatattaa
gi|1 : cactgttgctaggatatatcaatctggtaacgttaaatgttgcaactgacgttatatgtcgtaacgctgacaccaacgctaaatgtcacacctttaacgcgtcatgtcgaaagatttgtacaaccggtatatgtcgcgactgtggggaccgctggttgaaatgccttatattcgatgtgctgattcacttattttgctgagcgcatggccaacaaattggttacaggtacatatgtttattgctaacatacctacggcatattcaacagaagttgtgtttatatttgtttacccatttaaatcaaggcatatcataagaaggcttcctaaagaaaatagctaaataccggacagacggactgtcagagacagacataccgcatcagacaagacgagacttcgccacagcagatgtgcaaattaaaaaatgacaaatcatttatcttctccattttatcattgctggtacgtccataataatcgatgcaatgtaactatatgtttgtgccgatgaaccaatgcgacatctagagttggaatcgcgatatataccagtggtacgaatcttgcgatatatagtgttgtataaagcggcatattgttTG-----------TG--GC--A---A----------CGTT------------------AA------------------ATGA--CAC------A--TCGGCGCTGAA-TGGCACAAcaagtcttgtgacatataccattgattgtgccattcagcgccgatgtgtcatttaacgttgccacacactcaaatattaa
gi|10 : cactgttgctaggatatatcaatctggtaacgttaaatgttgcaactgacgttatatgtcgtaacgctgacaccaacgctaaatgtcacacctttaacgcgtcatgtcgaaagatttgtacaaccggtatatgtcgcgactgtggggaccgctggttgaaatgccttatattcgatgtgctgattcacttattttgctgagcgcatggccaacaaattggttacaggtacatatgtttattgctaacatacctacggcatattcaacagaagttgtgtttatatttgtttacccatttaaatcaaggcatatcataagaaggcttcctaaagaaaatagctaaataccggacagacggactgtcagagacagacataccgcatcagacaagacgagacttcgccacagcagatgtgcaaattaaaaaatgacaaatcatttatcttctccattttatcattgctggtacgtccataataatcgatgcaatgtaactatatgtttgtgccgatgaaccaatgcgacatctagagttggaatcgcgatatataccagtggtacgaatcttgcgatatatagtgttgtataaagcggcatattgttttgcgacaatttagcgttagttgcgacattgaacgcaagtcttgtgacatataccattgaTCTTTCAT-TCTGGAGTGTGCTTACACATGCTCTATATTCTTACTCATG-TTCTATATACTTGCTCCGATACAAAACCGTCCAAATTTCTTACCTTTAGCTAGTTTTCGTTACAGTACTCTGTACCACAGGTGACCG-ATATAGTGACCCGTT---TAcactcaaatattaa
gi|10 : ---------ATGAGTATATGATCACAATGAATGAAAAAACAATGAGTACTGTATTAAACAAGCACTGTTGCTAGGGTAGG----TCACTCTG-----------TG--GT--A---A----------CGTT------------------AA------------------ATGT--CGC------A--TCGACGCTAAA-TGTCGCAnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnccccccccccgacccccctaaaattaaaacgctcctacacccatgagtatatgatcacaatgaatgaaaaaacaatgagtactgtattaaacaagcactgttgctagggtaggtcactctgtggtaacgttaaatgtcgcatcgacgctaaatgtcgcatccgacgttatatacgcacgttatatacgctgacacca
gi|11 : tctttcattctggagtgtgcttacacatgctctatattcttactcatgttctatatacttgctccgatacaaaaccgtccaaatttcttacctttagctagttttcgttacagtactctgtaccacaggtgaccgatatagtgacccgtttannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnccccccccccgacccccctaaaattaaaacgctcctacacccTCTTTCAT-TCTAGATTGTGCTT-------------------ACTCGTG-TTCTATATACTTGCTCCGATACAAAACCGTCCATAATTCTTACCTTTCGCTTGTTTTCGGTACAGTACTTTGAACCACAGGTGACCATTTAT----ACCCGTT---CAtccgacgttatatacgcacgttatatacgctgacacca
gi|11 : ---------ATGAATATATGATTACAATGAATACAGAAAAAATTAATATTGTATTAAGCTAGCATTATTGCTAGGTTGGA----TCACTTTG-----------TA--GT--A---A----------CGTT------------------AA------------------ATGT--TGC------A--CCGACGCTCAA-TGTCGCAACtacatacacgtttannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnatctccccctcaataattaaaatgttcctacatccatgaatatatgattacaatgaatacagaaaaaattaatattgtattaagctagcattattgctaggttggatcactttgtagtaacgttaaatgttgcaccgacgctcaatgtcgcaaccgacgttatatgtcgcaacgttgacaccaacgct
gi|12 : tctttcattctagattgtgcttactcgtgttctatatacttgctccgatacaaaaccgtccataattcttacctttcgcttgttttcggtacagtactttgaaccacaggtgaccatttatacccgttcatacatacacgtttannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnatctccccctcaataattaaaatgttcctacatccTCTTTCAT-TCTGGATTGTGCTTT------------------GCTCATG-TTCTATATACTTCCTCCGATACAAAACCGT------------CCTCTCGCTTGTTTTCAGT--AG----------CACAGGTGACCA-ATATAGTGAACCGTT---cgacgttatatgtcgcaacgttgacaccaacgct
gi|12 : ---------ATGAATATATGATCACAATGAATACAAAACCAATGAGTCTTATATTAAAAAAGTACTCTTGCTAGGGTAGAAAGATCACTCTG-----------TG--TT--A---A----------CGTTTATTGTCGCACCCAAGCTAA------------------ATGT--CGC-----AA--CCGACGATATA-TGTCGCAACTCTGACAaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntgcccccaattattaaaacacccatgaatatatgatcacaatgaatacaaaaccaatgagtcttatattaaaaaagtactcttgctagggtagaaagatcactctgtgttaacgtttattgtcgcacccaagctaaatgtcgcaaccgacgatatatgtcgcaactctgacactaacgca
gi|13 : tctttcattctggattgtgctttgctcatgttctatatacttcctccgatacaaaaccgtcctctcgcttgttttcagtagcacaggtgaccaatatagtgaaccgttaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntgcccccaattattaaaacacccCTCTTAT-TCTGGAGTGTGTTT-------------------ACTCATG-TTCTATAAACTTGCTCAGATACAAAACCGTCCATATTTCTTGCCTTTCACTTGTATTCA-----------------------GAACA-ATATAGTTACCCGTT---TAATGTTCAGATT---------Actaacgca
gi|13 : GAGTATGTGATCACAATGAATACAAAAACAGTGAGTGTTGTATTAAACAAGCATCGCTGCTAGGGTACA----TCGCTCTG-----------TG--GT--A---A----------CGTT------------------AA------------------ATGT--CGC------A--CCGACGCTTAA-TGTCGCAACGnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnagttcccctcataatttaaacgctcctttacccaagagtatgtgatcacaatgaatacaaaaacagtgagtgttgtattaaacaagcatcgctgctagggtacatcgctctgtggtaacgttaaatgtcgcaccgacgcttaatgtcgcaacgt
gi|14 : ctcttattctggagtgtgtttactcatgttctataaacttgctcagatacaaaaccgtccatatttcttgcctttcacttgtattcagaacaatatagttacccgtttaatgttcagattannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnagttcccctcataatttaaacgctcctttacccaaTCTTTCAT-TCTGGAGTGTGCTT-------------------ATTCATG-TTCTGTATACTTTCTCCGATACAAAACCATCCATATTTCTTACCTTGCGTTt
gi|14 : ---------ATGAATATATTATCACAATGAATACAAA---------------------CAAGCACTCTTGCTAGGGTAGA----TCACTCTG-----------TG--GT--A---A----------CATT------------------AA------------------ATGT--CGCATCGAAA--CCGATATTATA-TGnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnccccccccctcccccatccccaattaattaaaaagctcacacatccatgaatatattatcacaatgaatacaaacaagcactcttgctagggtagatcactctgtggtaacattaaatgtcgcatcgaaaccgatattatatg
gi|15 : tctttcattctggagtgtgcttattcatgttctgtatactttctccgatacaaaaccatccatatttcttaccttgcgttnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnccccccccctcccccatccccaattaattaaaaagctcacacatccTTTCTT-TCTGCAGTGTGCTT-------------------ACTCATGATTCTATATACTTGTTCCGATACAAAACCGACAATATTTCTTACCTTTCGCTTGTTTTCGGTACAGTAAACTGT
gi|15 : ---------ATGAATATATGATCACAACGAATTCAAAAACAATCAGTGT--------------ACTCTTGCTACGGTAGA----CGACTCTG-----------TG--GT--A---A----------CGTT------------------AA------------------TTGT--CGC------A--TCTATGGTAAA-TGTCGCAA--CCGACAtactcacgttgccaccatccccaataacttaaacgctcctgcacccatgaatatatgatcacaacgaattcaaaaacaatcagtgtactcttgctacggtagacgactctgtggtaacgttaattgtcgcatctatggtaaatgtcgcaaccgacatca
gi|16 : tttctttctgcagtgtgcttactcatgattctatatacttgttccgatacaaaaccgacaatatttcttacctttcgcttgttttcggtacagtaaactgttactcacgttgccaccatccccaataacttaaacgctcctgcacccAATGAAT-----TCGACACA----------------CCATTTACATT-AAAACAAACATA-ACAAAGAA---AGAAAAAGCTGCATTCAACATAC-----AAA------T-----------AATCATAATTTACGGGC------TCGTTGC--ACGGG------ACATTATTAGTACTGTTT-AAATAAACAC--TACACATTTCAATGAATAATTACGACAATGTT--TATATACGCAAGCTCATGAGCGCAATA---------ATAAATATATGAtca
gi|17 : t---------ATGAATATGTGATCACAATGAATACAAAAACAGTGAGTGTTGTATTAAACA--------------GATAGA----TCGCTCTG-----------TG--GTTTA---A----------CGTA------------------AA------------------ATGT--CGC-----A---CCGACGCTAAA-TGTCGCAACGCTGACA
gi|18 : acattaataaaatcatttaaaggaggtatacttgatgacgaattatttattgaaacgctcctacacccAAGGTTAAAACTGACCTTTTAAAACTGTATTGTTGCAAACATTTAATGAACGAATGGGTGGTATTT--TACATACCGTA----AAACACCATTTACATT-AAAACAGACATTTGCAAACAAAGTAGAAAAAGCTGCTTTCAACATcttacgcta
gi|19 : CTCTAAT-TCTGGAGTGTGATT-------------------TCTCATA-TTCTATATACATGCTCCTATACAAAACCGTCCATATTTCTTACCTTTCACTTGTTTTCGGCACAGTACACT-TACAACAGGTGACCA-ATATAGTGACCCGTC---TAATGTT
gi|2 : TCTTTCAG-TCTTGAGTGCGCTT-------------------ACTCCTG-CTCTATATACTTGCTCTGATACACAACCGTCTATATTTCGTAC-TTTCACTTCTTTTCTGTACAATCTCCTGTACCACAGATGATCA-ATATAGTAATCCAAT---TAATGTTAAAATT---------AAGCTTTATCTTTGCAAACATTTAAAGTATGAATGAATG----TCGACACATACCGTA----AAACACCATTTACATT-AAAACAAACATTTACAAAGAA---AGAAAAAGCTGCATTTAACACAC-----AAACAATCAT-----------AATTTACCGG------C------TCGTTGC--ATGCT------ACATCATTAGTGTTGTTT-AAATGTACAC--TGCGCATTTCATAGAACAATTACGAAACTGTT--AA-ATACGCAAGCTGATGAGCGCAATA---------ATACATACATGGTCACAATGAATACAAAAACAATGAGTGATGTATTAAACAAGCACTGTTGCTAGGGTAGA----TCACTCTGGTAACATTAAATGTCGC--ATCGA----------CGCT------------------AA------------------ATGT--CAC-----AA--CCGACGTTATA-TGTCGCAACGCTGACAca
gi|20 : CTTTCATCTTTGGAGAATGCAT-------------------AATCATC-TTCTATATACTTTCTCCGATACAAAACCGTCCATATTTCTTATCTTTCGCTTGTTTTCGGCACAGTACTCTGTTCCAAAGGTGACCA-ATATCGTGATCCTTT---Tctaacgct
gi|21 : TTTCAT-TCTGGAGTGTGCTT-------------------ACTCATG-TTTTATATACTTTCTCCGATACAAAAC-GTCAATATTTCTTACCGTTCGCTTGTTTTCAGTACAGTACTCTGTACCACAGGTGACCA-ATACAGTGACCCGTT---T
gi|22 : aTCTTTCAT-TCTGGAGTGTGCTT-------------------ACTCATG-TTCTATATACTTGTTGCGAAACAAACATGTACATGTTTCTTACC----------TTTCGGTACATTACCCTGTACCATAGGTGACCA-ATATAGTGACCCGTT---TAATGT
gi|23 : TCTTTCAT-TCTGGAGTGTGCTT-------------------ACTCATG-TTCTATATACTTGCTCCGATACAAAACCGTCCATATGTCTTA-CTTTCGCTTGTTTT------------CTGTACCACTGGTGACCA-ATATAATGACCCGTT---TAATGTTc
gi|24 : AGA----TTACTCTG-----------TG--GT--A---A----------CGTT------------------AA------------------ATGT--CGCGTCGAAA--CCGATGATAc
gi|25 : annnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnATGAATACAAAAA-AATGAGTGTTGTATTAAACAAGCACTGTTGCTAGGGTAGA----TCCCTCTG-----------TG--CT--A---A----------CATT------------------AA------------------ATGT--CGC-----AA--Cactattagg
gi|26 : cctccccttccccccagtaattataacactcatacatcc---A----------CGCT------------------AA------------------ATGTTTCGC-----AA--CTGACGTTATA-TGTCGCAAGACTGACgct
gi|26 : ataacgcactgagT--G---A----------CGTT------------------AT------------------ATGT--CGC-----AAGACTGACGTTAAA-AGTCGCAACgttaaaagtcgcaaccaatagcgaaacaaacgttttcattcaaatcacgcttttataca
gi|27 : ataacgcactgagacgctaaatgtttcgcaacATGAGTTTTGTATTAAACAAGCACTGTTACTATGGTAAA----TCACTCTG-----------TG--GT--A---A----------CGTT------------------AA------------------AAGT--CGC------A--CAGACGCTAAA-TGTCACAAGGCTGACAcaatagcgaaacaaacgttttcattcaaatcacgcttttataca
gi|28 : TCTTTCGT-TTTGGAGTGTGTTT-------------------ACTCATG-TTTTATATACTTGCTCCAATACACAACCGTCCATAATTCTTACATTTCGCTTGTTTCCAATATActaacg
gi|3 : TCTTTCAC-TCTGGAGTCTGCTA-------------------ACACATG-TTCTATATACTTGCTTCTATACACAACCGTCCATATTTCTTACATTTCGCTTGTTTT------AGT------TA-CAC-----------TATAGTGACCATTT---TAATGTTAAAATT---------ATATTGTGCCTTTACAAACATTTAAAGAATGAATGAATG----TCAACACATACCGTA----AAACACCGTTTACATT-AAAACAAACACTTACAAAGAA---AGAAAAAGCTCCATTAAACATAC-----AAA------T-----------AATCATATTTTTCGGAC------TCGTCGC--ACGGG------ACTTTATTAGTACTGTTTAAAATAAACAC--TTCAAACTTCGTTGAACAATTACGATACTGTT--TATATACGCAAGCTGATGAGTGCAATACTATTTAATATATATATATGATCACAATGAATACAAAAATAATGAGTGTTGTATTAAACAAGCACTGTTGCTAGGGTAAA----TCACTC-------------TG--GT--A---A----------CGTT------------------AA------------------ATGT--CTC------A--TCGACGCTAAA-TGTCACAA--CCGACAacga
gi|30 : ---------ATGAATATATGTTTACAATGAATACATAAACAATA-----TCTATTAAACAAGttatatgcggcaacgctgacaccaacgct
gi|32 : ccacatgaaaagttccttcatccT--A---A----------CGTT------------------AA-------------------TGT--CGC-----A---CTGACGCTAAA-TGTCGCAAC
gi|4 : tggttttgcgacacttTTTCAG-TCTTGAGTGTGTTA-------------------ACTCCTG-TTCTATAAACTTGCTCCTAAACTCAACTGTACATAGTTCTTACATTTCGCTTGTTTTCGTTGCAGTACCCTGTACCACAGCTGACCA-ATATAGTGAATCTTT---TAATGTTAGATTT---------AAACTGTATCTTTGCAAACATTTAAAGAAAGAATGGATG----CTGACATTTACTGTA----AAACACCATTTACATTAAAAAAAAACACTTACAAAGAA---AGAAAAAGCTGCATTCAGTTTACAAATGAAA------T-----------AATTATAATTCACGGGC------TCGTCCC--ACGGG------ACATTGTTATCATTGTTT-AAATAA-------ACAAATTTCAATGAATAATTACGATACTGTTTATATATACGCAAGCGCATGAGCACAATA---------ATAAATATATGACCATAATGAATACAGAACCAATGAGTGATGTATTAAACAA--------GCTAGAGTAGA----TCACTCTG-----------TG--TT--A---ATGATAAATGTCGCT------------------AA------------------ATGT--TGC-----AA--CTGAATTTATA-TGTCGCAACGCTGACA
gi|5 : TATATACTTGTTGCTATACACTATCGTCCATATTTCTTACCTTTCGCTTGCTTTCGGTACAGTACCCTGTACCACAGTTGACCA-ATTTAGTGACTCTTT---TAATGTTTAAATT---------AAACTGTATCTTTTCAACCATTTAAAGAATGAACCAATA----TCGACACATACCGTAGAACAAACACCATTTACATT-AAATCAAACATGTACAAAGAA---ATAAAAAGGTGTATTCAACATAC-----AAA------TGA---------AATA------------A------TCATAATTTACGGGCTCATGGCATTTTTAGCATTGTTT-AAATATATATCATACAA--TTCAAAGAACAATTTCGATACTGTT---ATATACGTAAGCGGGTGAGCGCAATA---------GTAAATATATGATCACAATGAATACAAAAACAACGAGTGTTGTATTAAACAAGCACTCTTGCTAGGGTCGA----TCACTCTG-----------TG--GT--A---A----------TGTT------------------AA------------------ATGT--CGC------A--CCGGCGCGAAA-TGTCGCTACcaaacgct
gi|6 : TCTTTCAG-TCTTGAGTGTGCTT-------------------ACTCATG-TTCTATATACTTGCTCCTATACACAATCGTCCATGTTTATTACCTTTCGCTTGTTTTCGGTACAGTACCCTGTACCACAGGTGACCA-ATATAGTGACCCTTT---TAATGTTAAAATT---------AAACTGTACATTTGCAATCATTTCAAGAATGAATGAATG----TCGAAACATACCGTC----AAACACCATTTACATT-AAAACAAACATTTACAAAGAA---AGAAAAAGCTGCATTCAAAATAC-----AAA------T-----------AA---------------------TCGTCGC--ACCGG------ACATTATGAGTATTGTAT-AAATAAACAC--TACAAATTTCAGTAAACAATTATGATACTGTT--TATATACGCAAGCGAATGAGTGCAATA---------ATAAATATATGATCACAATGAATACAAAAACACTGAGTGTTGTATTAAACAAGCACTTTTGCTAGGGTAGC----TCACTCTG-----------TG--GT--A---A----------CATT------------------AA------------------ATGT--CGC-----AA--CCGACGTTGTA-TATCGCAACGCTGACAcgacgttagagtttatgtcgtaacgctgacaccaacgcta
gi|7 : TATATACTTACTCCGTTATACAACGGTCCATATTTCTTAACTTTCGCTTGTTTTCGGTACAGTACCCTGTACCACAGGTGATCA-ATATAGTGACGCTTTAAATAACGTTAAA-TT---------AAACTGTATATTTGCAAACATTTAAAGAAGAAATGAACG----TCGTCACATACCGTA----GAACACCATT-------AAAACAAACATTTAGAAAGAA---AGAAAAAACTGCATTCAACATAC-----AAAAAATCAT-----------AATTTACGGG------C------TCGTCGC--ACGGG------ACATTATTAGTATTGTTT-AAATAAACAC--TACAAATTTCAAC----------------------ATATACGCACGCTGATGAGCGTA----------------------GATCACAATGAATACAAAAACAATGAGTGTTGTATTAAACAAGCACTGTTGCTAGGGTAGA----TCATTCCA-----------TG--GT--A---A----------TGTT------------------AAATATTGCACCAAAGCTAAATGT--CAC-----AA--CCGACGTAATA-TGTC
gi|8 : TATATACTTACTCCGTTATACAACGGTCCATATTTCTTAACTTTCGCTTGTTTTCGGTACAGTACCCTGTACCACAGGTGATCA-ATATAGTGACGCTTTAAATAACGTTAAA-TT---------AAACTGTATATTTGCAAACATTTAAAGAAGAAATGAACG----TCGTCACATACCGTA----GAACACCATT-------AAAACAAACATTTAGAAAGAA---AGAAAAAACTGCATTCAACATAC-----AAAAAATCAT-----------AATTTACGGG------C------TCGTCGC--ACGGG------ACATTATTAGTATTGTTT-AAATAAACAC--TACAAATTTCAAC----------------------ATATACGCACGCTGATGAGCGTA----------------------GATCACAATGAATACAAAAACAATGAGTGTTGTATTAAACAAGCACTGTTGCTAGGGTAGA----TCATTCCA-----------TG--GT--A---A----------TGTT------------------AAATATTGCACCAAAGCTAAATGT--CAC-----AA--CCGACGTAATA-TGTC
gi|9 : TTCAG-TCTTGATTGTGCTTT------------------ACACATG-TTCTATATATTTGCTCCTATACACAACCGTCCATATCTCTTAACTTTCGCTTGTTTTCGGTACTGTCCTCTGTACCGCAGGTGATTA-ATATAGTGACC-ATT---TAATGATAAAGTT---------AAACTGTATCTTTGCATGTCTTAAAAGAATGAATGAATG----TAGACACATACCGTA----AAACACCGTTTACATT-AAAACAAACATTTACAAAGAA---AGAAAAAACTGCATTCAACATAC-----AAA------TGAAATAATCATAATT------------TACCGGATCGTTGC--AGGGG------ACATTATTAGTATTGTTT-AAATATACAC--AACACGTGTCAATGAACAATTACGATAATGTC--TATATACGCAAGCTGATGAGTGCAATA---------ATAAATATATTATAACAATGAATATAAAAATAATGAGTGTTGTA
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|29 ): ANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCCACTTCACCCATAATTGAAAAGTTCCAATATCC
Unaligned ( gi|31 ): TTATGTCGCAAGCTTTGTACAGCCGGTATATGTTGCGACTGTGGGGATCGCTGATTGAAA
Alignments
lowQualScore : 11111111111111111111111111111111111111111
lowQualScore : 2222222222222222222 111111111 11111 55555555555555555555555555555555555555555 111111 111 111111111 11111111111 111111111111111111 222222222222222222 111111
lowQualScore : 2 2222222222222222222 2 1 0 2 2 2 888 4 666666666 0 0 8888 8888 0 4 777 11111 11111111111111111111111111111111111111111 66 222222 4 66 77 0 1 000 1 000000000 1 4444 00000000000 22 22 333 7777777777 222222222222222222 555555555555555555 22 666666 22 1 1
lowQualScore : . ................... . . . . . . ... . ......... . . .... .... . . ... ..... ......................................... .. ...... . .. .. . . ... . ......... . .... ........... .. .. ... .......... .................. .................. .. ...... .. . .
lowQualScore : 4 9999999999999999999 4 8 4 8 4 2 222 9 000000000 1 9 5555 5555 8 0 000 11111 77777777777777777777777777777777777777777 11 888888 4 11 33 9 1 888 9 000000000 2 7777 00000000000 99 66 222 6666666666 888888888888888888 777777777777777777 44 777777 44 0 9
consensus : TCTTTCAT-TCTGGAGTGTGCTT-------------------ACTCATG-TTCTATATACTTGCTCCGATACAAAACCGTCCATATTTCTTACCTTTCGCTTGTTTTCGGTACAGTACCCTGTACCACAGGTGACCA-ATATAGTGACCCGTT---TAATGTTAAAATT---------AAACTGTATCTTTGCAAACATTTAAAGAATGAATGAATG----TCGACACATACCGTA----AAACACCATTTACATT-AAAACAAACATTTACAAAGAA---AGAAAAAGCTGCATTCAACATAC-----AAA------T-----------AATT------------C------TCGTCGC--ACGGG------ACATTATTAGTATTGTTT-AAATAAACAC--TACAAATTTCAACGAACAATTACGATACTGTT--TATATACGCAAGCTGATGAGCGCAATA---------ATGAATATATGATCACAATGAATACAAAAACAATGAGTGTTGTATTAAACAAGCACTGTTGCTAGGGTAGA----TCACTCTG-----------TG--GT--A---A----------CGTT------------------AA------------------ATGT--CGC-----AA--CCGACGCTANA-TGTCGCAACGCTGACA
Reference ( family-2969 ) : TCTTTCAT-TCTGGAGTGTGCTT-------------------ACTCATG-TTCTATATACTTGCTCCGATACAAAACCGTCCATATTTCTTACCTTTCGCTTGTTTTCGGTACAGTACCCTGTACCACAGGTGACCA-ATATAGTGACCCGTT---TAATGTTAAAATT---------AAACTGTATCTTTGCAAACATTTAAAGAATGAATGAATG----TCGACACATACCGTA----AAACACCATTTACATT-AAAACAAACATTTACAAAGAA---AGAAAAAGCTGCATTCAACATAC-----AAA------T-----------AATT------------C------TCGTCGC--ACGGG------ACATTATTAGTATTGTTT-AAATAAACAC--TACAAATTTCAACGAACAATTACGATACTGTT--TATATACGCAAGCTGATGAGCGCAATA---------ATGAATATATGATCACAATGAATACAAAAACAATGAGTGTTGTATTAAACAAGCACTGTTGCTAGGGTAGA----TCACTCTG-----------TG--GT--A---A----------CGTT------------------AA------------------ATGT--CGC-----AA--CCGACGCTANA-TGTCGCAACGCTGACA
gi|1 : CACTGTTGCTAGGATATA----TCAATCTG---------------GT--A---A----------CGTT------------------AA------------------ATGT--TGC-----AA--CTGACGTTATA-TGTCGTAACGCTGACA
gi|1 : ----------CGTT------------------CA------------------ATGT--CGC-----AA--CTAACGCTAAATTGTCGCAAccaacgctaaatgtcacacctttaacgcgtcatgtcgaaagatttgtacaaccggtatatgtcgcgactgtggggaccgctggttgaaatgccttatattcgatgtgctgattcacttattttgctgagcgcatggccaacaaattggttacaggtacatatgtttattgctaacatacctacggcatattcaacagaagttgtgtttatatttgtttacccatttaaatcaaggcatatcataagaaggcttcctaaagaaaatagctaaataccggacagacggactgtcagagacagacataccgcatcagacaagacgagacttcgccacagcagatgtgcaaattaaaaaatgacaaatcatttatcttctccattttatcattgctggtacgtccataataatcgatgcaatgtaactatatgtttgtgccgatgaaccaatgcgacatctagagttggaatcgcgatatataccagtggtacgaatcttgcgatatatagtgttgtataaagcggcatattgttttgcgacaatttagcgttagttgcgacattgaacgcaagtcttgtgacatataccattgattgtgccattcagcgccgatgtgtcatttaacgttgccacacactcaaatattaa
gi|1 : cactgttgctaggatatatcaatctggtaacgttaaatgttgcaactgacgttatatgtcgtaacgctgacaccaacgctaaatgtcacacctttaacgcgtcatgtcgaaagatttgtacaaccggtatatgtcgcgactgtggggaccgctggttgaaatgccttatattcgatgtgctgattcacttattttgctgagcgcatggccaacaaattggttacaggtacatatgtttattgctaacatacctacggcatattcaacagaagttgtgtttatatttgtttacccatttaaatcaaggcatatcataagaaggcttcctaaagaaaatagctaaataccggacagacggactgtcagagacagacataccgcatcagacaagacgagacttcgccacagcagatgtgcaaattaaaaaatgacaaatcatttatcttctccattttatcattgctggtacgtccataataatcgatgcaatgtaactatatgtttgtgccgatgaaccaatgcgacatctagagttggaatcgcgatatataccagtggtacgaatcttgcgatatatagtgttgtataaagcggcatattgttTG-----------TG--GC--A---A----------CGTT------------------AA------------------ATGA--CAC------A--TCGGCGCTGAA-TGGCACAAcaagtcttgtgacatataccattgattgtgccattcagcgccgatgtgtcatttaacgttgccacacactcaaatattaa
gi|10 : cactgttgctaggatatatcaatctggtaacgttaaatgttgcaactgacgttatatgtcgtaacgctgacaccaacgctaaatgtcacacctttaacgcgtcatgtcgaaagatttgtacaaccggtatatgtcgcgactgtggggaccgctggttgaaatgccttatattcgatgtgctgattcacttattttgctgagcgcatggccaacaaattggttacaggtacatatgtttattgctaacatacctacggcatattcaacagaagttgtgtttatatttgtttacccatttaaatcaaggcatatcataagaaggcttcctaaagaaaatagctaaataccggacagacggactgtcagagacagacataccgcatcagacaagacgagacttcgccacagcagatgtgcaaattaaaaaatgacaaatcatttatcttctccattttatcattgctggtacgtccataataatcgatgcaatgtaactatatgtttgtgccgatgaaccaatgcgacatctagagttggaatcgcgatatataccagtggtacgaatcttgcgatatatagtgttgtataaagcggcatattgttttgcgacaatttagcgttagttgcgacattgaacgcaagtcttgtgacatataccattgaTCTTTCAT-TCTGGAGTGTGCTTACACATGCTCTATATTCTTACTCATG-TTCTATATACTTGCTCCGATACAAAACCGTCCAAATTTCTTACCTTTAGCTAGTTTTCGTTACAGTACTCTGTACCACAGGTGACCG-ATATAGTGACCCGTT---TAcactcaaatattaa
gi|10 : ---------ATGAGTATATGATCACAATGAATGAAAAAACAATGAGTACTGTATTAAACAAGCACTGTTGCTAGGGTAGG----TCACTCTG-----------TG--GT--A---A----------CGTT------------------AA------------------ATGT--CGC------A--TCGACGCTAAA-TGTCGCAnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnccccccccccgacccccctaaaattaaaacgctcctacacccatgagtatatgatcacaatgaatgaaaaaacaatgagtactgtattaaacaagcactgttgctagggtaggtcactctgtggtaacgttaaatgtcgcatcgacgctaaatgtcgcatccgacgttatatacgcacgttatatacgctgacacca
gi|11 : tctttcattctggagtgtgcttacacatgctctatattcttactcatgttctatatacttgctccgatacaaaaccgtccaaatttcttacctttagctagttttcgttacagtactctgtaccacaggtgaccgatatagtgacccgtttannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnccccccccccgacccccctaaaattaaaacgctcctacacccTCTTTCAT-TCTAGATTGTGCTT-------------------ACTCGTG-TTCTATATACTTGCTCCGATACAAAACCGTCCATAATTCTTACCTTTCGCTTGTTTTCGGTACAGTACTTTGAACCACAGGTGACCATTTAT----ACCCGTT---CAtccgacgttatatacgcacgttatatacgctgacacca
gi|11 : ---------ATGAATATATGATTACAATGAATACAGAAAAAATTAATATTGTATTAAGCTAGCATTATTGCTAGGTTGGA----TCACTTTG-----------TA--GT--A---A----------CGTT------------------AA------------------ATGT--TGC------A--CCGACGCTCAA-TGTCGCAACtacatacacgtttannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnatctccccctcaataattaaaatgttcctacatccatgaatatatgattacaatgaatacagaaaaaattaatattgtattaagctagcattattgctaggttggatcactttgtagtaacgttaaatgttgcaccgacgctcaatgtcgcaaccgacgttatatgtcgcaacgttgacaccaacgct
gi|12 : tctttcattctagattgtgcttactcgtgttctatatacttgctccgatacaaaaccgtccataattcttacctttcgcttgttttcggtacagtactttgaaccacaggtgaccatttatacccgttcatacatacacgtttannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnatctccccctcaataattaaaatgttcctacatccTCTTTCAT-TCTGGATTGTGCTTT------------------GCTCATG-TTCTATATACTTCCTCCGATACAAAACCGT------------CCTCTCGCTTGTTTTCAGT--AG----------CACAGGTGACCA-ATATAGTGAACCGTT---cgacgttatatgtcgcaacgttgacaccaacgct
gi|12 : ---------ATGAATATATGATCACAATGAATACAAAACCAATGAGTCTTATATTAAAAAAGTACTCTTGCTAGGGTAGAAAGATCACTCTG-----------TG--TT--A---A----------CGTTTATTGTCGCACCCAAGCTAA------------------ATGT--CGC-----AA--CCGACGATATA-TGTCGCAACTCTGACAaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntgcccccaattattaaaacacccatgaatatatgatcacaatgaatacaaaaccaatgagtcttatattaaaaaagtactcttgctagggtagaaagatcactctgtgttaacgtttattgtcgcacccaagctaaatgtcgcaaccgacgatatatgtcgcaactctgacactaacgca
gi|13 : tctttcattctggattgtgctttgctcatgttctatatacttcctccgatacaaaaccgtcctctcgcttgttttcagtagcacaggtgaccaatatagtgaaccgttaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntgcccccaattattaaaacacccCTCTTAT-TCTGGAGTGTGTTT-------------------ACTCATG-TTCTATAAACTTGCTCAGATACAAAACCGTCCATATTTCTTGCCTTTCACTTGTATTCA-----------------------GAACA-ATATAGTTACCCGTT---TAATGTTCAGATT---------Actaacgca
gi|13 : GAGTATGTGATCACAATGAATACAAAAACAGTGAGTGTTGTATTAAACAAGCATCGCTGCTAGGGTACA----TCGCTCTG-----------TG--GT--A---A----------CGTT------------------AA------------------ATGT--CGC------A--CCGACGCTTAA-TGTCGCAACGnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnagttcccctcataatttaaacgctcctttacccaagagtatgtgatcacaatgaatacaaaaacagtgagtgttgtattaaacaagcatcgctgctagggtacatcgctctgtggtaacgttaaatgtcgcaccgacgcttaatgtcgcaacgt
gi|14 : ctcttattctggagtgtgtttactcatgttctataaacttgctcagatacaaaaccgtccatatttcttgcctttcacttgtattcagaacaatatagttacccgtttaatgttcagattannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnagttcccctcataatttaaacgctcctttacccaaTCTTTCAT-TCTGGAGTGTGCTT-------------------ATTCATG-TTCTGTATACTTTCTCCGATACAAAACCATCCATATTTCTTACCTTGCGTTt
gi|14 : ---------ATGAATATATTATCACAATGAATACAAA---------------------CAAGCACTCTTGCTAGGGTAGA----TCACTCTG-----------TG--GT--A---A----------CATT------------------AA------------------ATGT--CGCATCGAAA--CCGATATTATA-TGnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnccccccccctcccccatccccaattaattaaaaagctcacacatccatgaatatattatcacaatgaatacaaacaagcactcttgctagggtagatcactctgtggtaacattaaatgtcgcatcgaaaccgatattatatg
gi|15 : tctttcattctggagtgtgcttattcatgttctgtatactttctccgatacaaaaccatccatatttcttaccttgcgttnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnccccccccctcccccatccccaattaattaaaaagctcacacatccTTTCTT-TCTGCAGTGTGCTT-------------------ACTCATGATTCTATATACTTGTTCCGATACAAAACCGACAATATTTCTTACCTTTCGCTTGTTTTCGGTACAGTAAACTGT
gi|15 : ---------ATGAATATATGATCACAACGAATTCAAAAACAATCAGTGT--------------ACTCTTGCTACGGTAGA----CGACTCTG-----------TG--GT--A---A----------CGTT------------------AA------------------TTGT--CGC------A--TCTATGGTAAA-TGTCGCAA--CCGACAtactcacgttgccaccatccccaataacttaaacgctcctgcacccatgaatatatgatcacaacgaattcaaaaacaatcagtgtactcttgctacggtagacgactctgtggtaacgttaattgtcgcatctatggtaaatgtcgcaaccgacatca
gi|16 : tttctttctgcagtgtgcttactcatgattctatatacttgttccgatacaaaaccgacaatatttcttacctttcgcttgttttcggtacagtaaactgttactcacgttgccaccatccccaataacttaaacgctcctgcacccAATGAAT-----TCGACACA----------------CCATTTACATT-AAAACAAACATA-ACAAAGAA---AGAAAAAGCTGCATTCAACATAC-----AAA------T-----------AATCATAATTTACGGGC------TCGTTGC--ACGGG------ACATTATTAGTACTGTTT-AAATAAACAC--TACACATTTCAATGAATAATTACGACAATGTT--TATATACGCAAGCTCATGAGCGCAATA---------ATAAATATATGAtca
gi|17 : t---------ATGAATATGTGATCACAATGAATACAAAAACAGTGAGTGTTGTATTAAACA--------------GATAGA----TCGCTCTG-----------TG--GTTTA---A----------CGTA------------------AA------------------ATGT--CGC-----A---CCGACGCTAAA-TGTCGCAACGCTGACA
gi|18 : acattaataaaatcatttaaaggaggtatacttgatgacgaattatttattgaaacgctcctacacccAAGGTTAAAACTGACCTTTTAAAACTGTATTGTTGCAAACATTTAATGAACGAATGGGTGGTATTT--TACATACCGTA----AAACACCATTTACATT-AAAACAGACATTTGCAAACAAAGTAGAAAAAGCTGCTTTCAACATcttacgcta
gi|19 : CTCTAAT-TCTGGAGTGTGATT-------------------TCTCATA-TTCTATATACATGCTCCTATACAAAACCGTCCATATTTCTTACCTTTCACTTGTTTTCGGCACAGTACACT-TACAACAGGTGACCA-ATATAGTGACCCGTC---TAATGTT
gi|2 : TCTTTCAG-TCTTGAGTGCGCTT-------------------ACTCCTG-CTCTATATACTTGCTCTGATACACAACCGTCTATATTTCGTAC-TTTCACTTCTTTTCTGTACAATCTCCTGTACCACAGATGATCA-ATATAGTAATCCAAT---TAATGTTAAAATT---------AAGCTTTATCTTTGCAAACATTTAAAGTATGAATGAATG----TCGACACATACCGTA----AAACACCATTTACATT-AAAACAAACATTTACAAAGAA---AGAAAAAGCTGCATTTAACACAC-----AAACAATCAT-----------AATTTACCGG------C------TCGTTGC--ATGCT------ACATCATTAGTGTTGTTT-AAATGTACAC--TGCGCATTTCATAGAACAATTACGAAACTGTT--AA-ATACGCAAGCTGATGAGCGCAATA---------ATACATACATGGTCACAATGAATACAAAAACAATGAGTGATGTATTAAACAAGCACTGTTGCTAGGGTAGA----TCACTCTGGTAACATTAAATGTCGC--ATCGA----------CGCT------------------AA------------------ATGT--CAC-----AA--CCGACGTTATA-TGTCGCAACGCTGACAca
gi|20 : CTTTCATCTTTGGAGAATGCAT-------------------AATCATC-TTCTATATACTTTCTCCGATACAAAACCGTCCATATTTCTTATCTTTCGCTTGTTTTCGGCACAGTACTCTGTTCCAAAGGTGACCA-ATATCGTGATCCTTT---Tctaacgct
gi|21 : TTTCAT-TCTGGAGTGTGCTT-------------------ACTCATG-TTTTATATACTTTCTCCGATACAAAAC-GTCAATATTTCTTACCGTTCGCTTGTTTTCAGTACAGTACTCTGTACCACAGGTGACCA-ATACAGTGACCCGTT---T
gi|22 : aTCTTTCAT-TCTGGAGTGTGCTT-------------------ACTCATG-TTCTATATACTTGTTGCGAAACAAACATGTACATGTTTCTTACC----------TTTCGGTACATTACCCTGTACCATAGGTGACCA-ATATAGTGACCCGTT---TAATGT
gi|23 : TCTTTCAT-TCTGGAGTGTGCTT-------------------ACTCATG-TTCTATATACTTGCTCCGATACAAAACCGTCCATATGTCTTA-CTTTCGCTTGTTTT------------CTGTACCACTGGTGACCA-ATATAATGACCCGTT---TAATGTTc
gi|24 : AGA----TTACTCTG-----------TG--GT--A---A----------CGTT------------------AA------------------ATGT--CGCGTCGAAA--CCGATGATAc
gi|25 : annnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnATGAATACAAAAA-AATGAGTGTTGTATTAAACAAGCACTGTTGCTAGGGTAGA----TCCCTCTG-----------TG--CT--A---A----------CATT------------------AA------------------ATGT--CGC-----AA--Cactattagg
gi|26 : cctccccttccccccagtaattataacactcatacatcc---A----------CGCT------------------AA------------------ATGTTTCGC-----AA--CTGACGTTATA-TGTCGCAAGACTGACgct
gi|26 : ataacgcactgagT--G---A----------CGTT------------------AT------------------ATGT--CGC-----AAGACTGACGTTAAA-AGTCGCAACgttaaaagtcgcaaccaatagcgaaacaaacgttttcattcaaatcacgcttttataca
gi|27 : ataacgcactgagacgctaaatgtttcgcaacATGAGTTTTGTATTAAACAAGCACTGTTACTATGGTAAA----TCACTCTG-----------TG--GT--A---A----------CGTT------------------AA------------------AAGT--CGC------A--CAGACGCTAAA-TGTCACAAGGCTGACAcaatagcgaaacaaacgttttcattcaaatcacgcttttataca
gi|28 : TCTTTCGT-TTTGGAGTGTGTTT-------------------ACTCATG-TTTTATATACTTGCTCCAATACACAACCGTCCATAATTCTTACATTTCGCTTGTTTCCAATATActaacg
gi|3 : TCTTTCAC-TCTGGAGTCTGCTA-------------------ACACATG-TTCTATATACTTGCTTCTATACACAACCGTCCATATTTCTTACATTTCGCTTGTTTT------AGT------TA-CAC-----------TATAGTGACCATTT---TAATGTTAAAATT---------ATATTGTGCCTTTACAAACATTTAAAGAATGAATGAATG----TCAACACATACCGTA----AAACACCGTTTACATT-AAAACAAACACTTACAAAGAA---AGAAAAAGCTCCATTAAACATAC-----AAA------T-----------AATCATATTTTTCGGAC------TCGTCGC--ACGGG------ACTTTATTAGTACTGTTTAAAATAAACAC--TTCAAACTTCGTTGAACAATTACGATACTGTT--TATATACGCAAGCTGATGAGTGCAATACTATTTAATATATATATATGATCACAATGAATACAAAAATAATGAGTGTTGTATTAAACAAGCACTGTTGCTAGGGTAAA----TCACTC-------------TG--GT--A---A----------CGTT------------------AA------------------ATGT--CTC------A--TCGACGCTAAA-TGTCACAA--CCGACAacga
gi|30 : ---------ATGAATATATGTTTACAATGAATACATAAACAATA-----TCTATTAAACAAGttatatgcggcaacgctgacaccaacgct
gi|32 : ccacatgaaaagttccttcatccT--A---A----------CGTT------------------AA-------------------TGT--CGC-----A---CTGACGCTAAA-TGTCGCAAC
gi|4 : tggttttgcgacacttTTTCAG-TCTTGAGTGTGTTA-------------------ACTCCTG-TTCTATAAACTTGCTCCTAAACTCAACTGTACATAGTTCTTACATTTCGCTTGTTTTCGTTGCAGTACCCTGTACCACAGCTGACCA-ATATAGTGAATCTTT---TAATGTTAGATTT---------AAACTGTATCTTTGCAAACATTTAAAGAAAGAATGGATG----CTGACATTTACTGTA----AAACACCATTTACATTAAAAAAAAACACTTACAAAGAA---AGAAAAAGCTGCATTCAGTTTACAAATGAAA------T-----------AATTATAATTCACGGGC------TCGTCCC--ACGGG------ACATTGTTATCATTGTTT-AAATAA-------ACAAATTTCAATGAATAATTACGATACTGTTTATATATACGCAAGCGCATGAGCACAATA---------ATAAATATATGACCATAATGAATACAGAACCAATGAGTGATGTATTAAACAA--------GCTAGAGTAGA----TCACTCTG-----------TG--TT--A---ATGATAAATGTCGCT------------------AA------------------ATGT--TGC-----AA--CTGAATTTATA-TGTCGCAACGCTGACA
gi|5 : TATATACTTGTTGCTATACACTATCGTCCATATTTCTTACCTTTCGCTTGCTTTCGGTACAGTACCCTGTACCACAGTTGACCA-ATTTAGTGACTCTTT---TAATGTTTAAATT---------AAACTGTATCTTTTCAACCATTTAAAGAATGAACCAATA----TCGACACATACCGTAGAACAAACACCATTTACATT-AAATCAAACATGTACAAAGAA---ATAAAAAGGTGTATTCAACATAC-----AAA------TGA---------AATA------------A------TCATAATTTACGGGCTCATGGCATTTTTAGCATTGTTT-AAATATATATCATACAA--TTCAAAGAACAATTTCGATACTGTT---ATATACGTAAGCGGGTGAGCGCAATA---------GTAAATATATGATCACAATGAATACAAAAACAACGAGTGTTGTATTAAACAAGCACTCTTGCTAGGGTCGA----TCACTCTG-----------TG--GT--A---A----------TGTT------------------AA------------------ATGT--CGC------A--CCGGCGCGAAA-TGTCGCTACcaaacgct
gi|6 : TCTTTCAG-TCTTGAGTGTGCTT-------------------ACTCATG-TTCTATATACTTGCTCCTATACACAATCGTCCATGTTTATTACCTTTCGCTTGTTTTCGGTACAGTACCCTGTACCACAGGTGACCA-ATATAGTGACCCTTT---TAATGTTAAAATT---------AAACTGTACATTTGCAATCATTTCAAGAATGAATGAATG----TCGAAACATACCGTC----AAACACCATTTACATT-AAAACAAACATTTACAAAGAA---AGAAAAAGCTGCATTCAAAATAC-----AAA------T-----------AA---------------------TCGTCGC--ACCGG------ACATTATGAGTATTGTAT-AAATAAACAC--TACAAATTTCAGTAAACAATTATGATACTGTT--TATATACGCAAGCGAATGAGTGCAATA---------ATAAATATATGATCACAATGAATACAAAAACACTGAGTGTTGTATTAAACAAGCACTTTTGCTAGGGTAGC----TCACTCTG-----------TG--GT--A---A----------CATT------------------AA------------------ATGT--CGC-----AA--CCGACGTTGTA-TATCGCAACGCTGACAcgacgttagagtttatgtcgtaacgctgacaccaacgcta
gi|7 : TATATACTTACTCCGTTATACAACGGTCCATATTTCTTAACTTTCGCTTGTTTTCGGTACAGTACCCTGTACCACAGGTGATCA-ATATAGTGACGCTTTAAATAACGTTAAA-TT---------AAACTGTATATTTGCAAACATTTAAAGAAGAAATGAACG----TCGTCACATACCGTA----GAACACCATT-------AAAACAAACATTTAGAAAGAA---AGAAAAAACTGCATTCAACATAC-----AAAAAATCAT-----------AATTTACGGG------C------TCGTCGC--ACGGG------ACATTATTAGTATTGTTT-AAATAAACAC--TACAAATTTCAAC----------------------ATATACGCACGCTGATGAGCGTA----------------------GATCACAATGAATACAAAAACAATGAGTGTTGTATTAAACAAGCACTGTTGCTAGGGTAGA----TCATTCCA-----------TG--GT--A---A----------TGTT------------------AAATATTGCACCAAAGCTAAATGT--CAC-----AA--CCGACGTAATA-TGTC
gi|8 : TATATACTTACTCCGTTATACAACGGTCCATATTTCTTAACTTTCGCTTGTTTTCGGTACAGTACCCTGTACCACAGGTGATCA-ATATAGTGACGCTTTAAATAACGTTAAA-TT---------AAACTGTATATTTGCAAACATTTAAAGAAGAAATGAACG----TCGTCACATACCGTA----GAACACCATT-------AAAACAAACATTTAGAAAGAA---AGAAAAAACTGCATTCAACATAC-----AAAAAATCAT-----------AATTTACGGG------C------TCGTCGC--ACGGG------ACATTATTAGTATTGTTT-AAATAAACAC--TACAAATTTCAAC----------------------ATATACGCACGCTGATGAGCGTA----------------------GATCACAATGAATACAAAAACAATGAGTGTTGTATTAAACAAGCACTGTTGCTAGGGTAGA----TCATTCCA-----------TG--GT--A---A----------TGTT------------------AAATATTGCACCAAAGCTAAATGT--CAC-----AA--CCGACGTAATA-TGTC
gi|9 : TTCAG-TCTTGATTGTGCTTT------------------ACACATG-TTCTATATATTTGCTCCTATACACAACCGTCCATATCTCTTAACTTTCGCTTGTTTTCGGTACTGTCCTCTGTACCGCAGGTGATTA-ATATAGTGACC-ATT---TAATGATAAAGTT---------AAACTGTATCTTTGCATGTCTTAAAAGAATGAATGAATG----TAGACACATACCGTA----AAACACCGTTTACATT-AAAACAAACATTTACAAAGAA---AGAAAAAACTGCATTCAACATAC-----AAA------TGAAATAATCATAATT------------TACCGGATCGTTGC--AGGGG------ACATTATTAGTATTGTTT-AAATATACAC--AACACGTGTCAATGAACAATTACGATAATGTC--TATATACGCAAGCTGATGAGTGCAATA---------ATAAATATATTATAACAATGAATATAAAAATAATGAGTGTTGTA
blockSeqs : C T A A T T G AAA A GACCTTTTA GTAT GAAC A AGT AAATG TGAAATAATCATAATTTACCGGA TT CTCATG A CA AG C TAT A CTATTTAAT G AAGA GTAACATTAAA TC TT TCG TGATAAATGT TATTGTCGCACCCAAGCT ATATTGCACCAAAGCTAA TT ATCGAA GA A T
blockSeqs : . T . A A . G AAA A . . . . . . CAATCATAATTTACCGGC . . . . TG C A A . A . . . . . . . ATATTGCACCAAAGCTAA . GTCGAA . A .
blockSeqs : . . . A A . G . A . . . . . . TAATCATATTTTTCGGAC . . . . TG C T A . C . . . . . . . . . A . A .
blockSeqs : . . . A C . G . T . . . . . . TAATTATAATTCACGGGC . . . . AG C T A . G . . . . . . . . . A . A .
blockSeqs : . . . A T . A . A . . . . . . AAATCATAATTTACGGGC . . . . TA C T A . C . . . . . . . . . A . T .
blockSeqs : . . . A T . T . A . . . . . . AAATCATAATTTACGGGC . . . . TG A . A . C . . . . . . . . . A . A .
blockSeqs : . . . C C . G . G . . . . . . TGAAATAA . . . . C . . . . G . . . . . . . . . A . T .
blockSeqs : . . . A C . G . . . . . . . . TAA . . . . C . . . . G . . . . . . . . . A . A .
blockSeqs : . . . A C . G . . . . . . . . G . . . . . . . . . A . A .
blockSeqs : . . . A C . T . . G . . . . . . . . . A . T .
blockSeqs : . . . A C . T . . C . . . . . . . . . A . T .
blockSeqs : . . . C C . T . . T . . . . . . . . . A . A .
blockSeqs : . . . C T . T . . G . . . . . . . . . A . A .
blockSeqs : . . . C . . T . . G . . . . . . . . . A . A .
blockSeqs : . . . C . . T . . . . . . . . . . . . . . A .
blockSeqs : . . . C . . A . . . . . . . . . . . . . T .
blockSeqs : C . . . . . . . . . . . . A .
blockSeqs : C . . . . . . . . . . T .
blockSeqs : C . . . . . . . . T .
blockSeqs : . . . . . . . . T .
blockSeqs : . . . . . . .
blockSeqs : . . . . . .
blockSeqCons : *******************
originalCons : TCTTTCAT-TCTGGAGTGTGCTT-------------------ACTCATG-TTCTATATACTTGCTCCGATACAAAACCGTCCATATTTCTTACCTTTCGCTTGTTTTCGGTACAGTACCCTGTACCACAGGTGACCA-ATATAGTGACCCGTT---TAATGTTAAAATT---------AAACTGTATCTTTGCAAACATTTAAAGAATGAATGAATG----TCGACACATACCGTA----AAACACCATTTACATT-AAAACAAACATTTACAAAGAA---AGAAAAAGCTGCATTCAACATAC-----AAA------T-----------AATT------------C------TCGTCGC--ACGGG------ACATTATTAGTATTGTTT-AAATAAACAC--TACAAATTTCAACGAACAATTACGATACTGTT--TATATACGCAAGCTGATGAGCGCAATA---------ATGAATATATGATCACAATGAATACAAAAACAATGAGTGTTGTATTAAACAAGCACTGTTGCTAGGGTAGA----TCACTCTG-----------TG--GT--A---A----------CGTT------------------AA------------------ATGT--CGC-----AA--CCGACGCTANA-TGTCGCAACGCTGACA
finalCons : TCTTTCAT-TCTGGAGTGTGCTT-------------------ACTCATG-TTCTATATACTTGCTCCGATACAAAACCGTCCATATTTCTTACCTTTCGCTTGTTTTCGGTACAGTACCCTGTACCACAGGTGACCA-ATATAGTGACCCGTT---TAATGTTAAAATT---------AAACTGTATCTTTGCAAACATTTAAAGAATGAATGAATG----TCGACACATACCGTA----AAACACCATTTACATT-AAAACAAACATTTACAAAGAA---AGAAAAAGCTGCATTCAACATAC-----AAA------T-----------AATT------------C------TCGTCGC--ACGGG------ACATTATTAGTATTGTTT-AAATAAACAC--TACAAATTTCAACGAACAATTACGATACTGTT--TATATACGCAAGCTGATGAGCGCAATA---------ATGAATATATGATCACAATGAATACAAAAACAATGAGTGTTGTATTAAACAAGCACTGTTGCTAGGGTAGA----TCACTCTG-----------TG--GT--A---A----------CGTT------------------AA------------------ATGT--CGC-----AA--CCGACGCTANA-TGTCGCAACGCTGACA
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|29 ): ANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCCACTTCACCCATAATTGAAAAGTTCCAATATCC
Unaligned ( gi|31 ): TTATGTCGCAAGCTTTGTACAGCCGGTATATGTTGCGACTGTGGGGATCGCTGATTGAAA
Alignments
lowQualScore : 11111111111111111111111111111111111111111
lowQualScore : 2222222222222222222 111111111 11111 55555555555555555555555555555555555555555 111111 111 111111111 11111111111 111111111111111111 222222222222222222 111111
lowQualScore : 2 2222222222222222222 2 1 0 2 2 2 888 4 666666666 0 0 8888 8888 0 4 777 11111 11111111111111111111111111111111111111111 66 222222 4 66 77 0 1 000 1 000000000 1 4444 00000000000 22 22 333 7777777777 222222222222222222 555555555555555555 22 666666 22 1 1
lowQualScore : . ................... . . . . . . ... . ......... . . .... .... . . ... ..... ......................................... .. ...... . .. .. . . ... . ......... . .... ........... .. .. ... .......... .................. .................. .. ...... .. . .
lowQualScore : 4 9999999999999999999 4 8 4 8 4 2 222 9 000000000 1 9 5555 5555 8 0 000 11111 77777777777777777777777777777777777777777 11 888888 4 11 33 9 1 888 9 000000000 2 7777 00000000000 99 66 222 6666666666 888888888888888888 777777777777777777 44 777777 44 0 9
consensus : TCTTTCAT-TCTGGAGTGTGCTT-------------------ACTCATG-TTCTATATACTTGCTCCGATACAAAACCGTCCATATTTCTTACCTTTCGCTTGTTTTCGGTACAGTACCCTGTACCACAGGTGACCA-ATATAGTGACCCGTT---TAATGTTAAAATT---------AAACTGTATCTTTGCAAACATTTAAAGAATGAATGAATG----TCGACACATACCGTA----AAACACCATTTACATT-AAAACAAACATTTACAAAGAA---AGAAAAAGCTGCATTCAACATAC-----AAA------T-----------AATT------------C------TCGTCGC--ACGGG------ACATTATTAGTATTGTTT-AAATAAACAC--TACAAATTTCAACGAACAATTACGATACTGTT--TATATACGCAAGCTGATGAGCGCAATA---------ATGAATATATGATCACAATGAATACAAAAACAATGAGTGTTGTATTAAACAAGCACTGTTGCTAGGGTAGA----TCACTCTG-----------TG--GT--A---A----------CGTT------------------AA------------------ATGT--CGC-----AA--CCGACGCTANA-TGTCGCAACGCTGACA
Reference ( family-2969 ) : TCTTTCAT-TCTGGAGTGTGCTT-------------------ACTCATG-TTCTATATACTTGCTCCGATACAAAACCGTCCATATTTCTTACCTTTCGCTTGTTTTCGGTACAGTACCCTGTACCACAGGTGACCA-ATATAGTGACCCGTT---TAATGTTAAAATT---------AAACTGTATCTTTGCAAACATTTAAAGAATGAATGAATG----TCGACACATACCGTA----AAACACCATTTACATT-AAAACAAACATTTACAAAGAA---AGAAAAAGCTGCATTCAACATAC-----AAA------T-----------AATT------------C------TCGTCGC--ACGGG------ACATTATTAGTATTGTTT-AAATAAACAC--TACAAATTTCAACGAACAATTACGATACTGTT--TATATACGCAAGCTGATGAGCGCAATA---------ATGAATATATGATCACAATGAATACAAAAACAATGAGTGTTGTATTAAACAAGCACTGTTGCTAGGGTAGA----TCACTCTG-----------TG--GT--A---A----------CGTT------------------AA------------------ATGT--CGC-----AA--CCGACGCTANA-TGTCGCAACGCTGACA
gi|1 : CACTGTTGCTAGGATATA----TCAATCTG---------------GT--A---A----------CGTT------------------AA------------------ATGT--TGC-----AA--CTGACGTTATA-TGTCGTAACGCTGACA
gi|1 : ----------CGTT------------------CA------------------ATGT--CGC-----AA--CTAACGCTAAATTGTCGCAAccaacgctaaatgtcacacctttaacgcgtcatgtcgaaagatttgtacaaccggtatatgtcgcgactgtggggaccgctggttgaaatgccttatattcgatgtgctgattcacttattttgctgagcgcatggccaacaaattggttacaggtacatatgtttattgctaacatacctacggcatattcaacagaagttgtgtttatatttgtttacccatttaaatcaaggcatatcataagaaggcttcctaaagaaaatagctaaataccggacagacggactgtcagagacagacataccgcatcagacaagacgagacttcgccacagcagatgtgcaaattaaaaaatgacaaatcatttatcttctccattttatcattgctggtacgtccataataatcgatgcaatgtaactatatgtttgtgccgatgaaccaatgcgacatctagagttggaatcgcgatatataccagtggtacgaatcttgcgatatatagtgttgtataaagcggcatattgttttgcgacaatttagcgttagttgcgacattgaacgcaagtcttgtgacatataccattgattgtgccattcagcgccgatgtgtcatttaacgttgccacacactcaaatattaa
gi|1 : cactgttgctaggatatatcaatctggtaacgttaaatgttgcaactgacgttatatgtcgtaacgctgacaccaacgctaaatgtcacacctttaacgcgtcatgtcgaaagatttgtacaaccggtatatgtcgcgactgtggggaccgctggttgaaatgccttatattcgatgtgctgattcacttattttgctgagcgcatggccaacaaattggttacaggtacatatgtttattgctaacatacctacggcatattcaacagaagttgtgtttatatttgtttacccatttaaatcaaggcatatcataagaaggcttcctaaagaaaatagctaaataccggacagacggactgtcagagacagacataccgcatcagacaagacgagacttcgccacagcagatgtgcaaattaaaaaatgacaaatcatttatcttctccattttatcattgctggtacgtccataataatcgatgcaatgtaactatatgtttgtgccgatgaaccaatgcgacatctagagttggaatcgcgatatataccagtggtacgaatcttgcgatatatagtgttgtataaagcggcatattgttTG-----------TG--GC--A---A----------CGTT------------------AA------------------ATGA--CAC------A--TCGGCGCTGAA-TGGCACAAcaagtcttgtgacatataccattgattgtgccattcagcgccgatgtgtcatttaacgttgccacacactcaaatattaa
gi|10 : cactgttgctaggatatatcaatctggtaacgttaaatgttgcaactgacgttatatgtcgtaacgctgacaccaacgctaaatgtcacacctttaacgcgtcatgtcgaaagatttgtacaaccggtatatgtcgcgactgtggggaccgctggttgaaatgccttatattcgatgtgctgattcacttattttgctgagcgcatggccaacaaattggttacaggtacatatgtttattgctaacatacctacggcatattcaacagaagttgtgtttatatttgtttacccatttaaatcaaggcatatcataagaaggcttcctaaagaaaatagctaaataccggacagacggactgtcagagacagacataccgcatcagacaagacgagacttcgccacagcagatgtgcaaattaaaaaatgacaaatcatttatcttctccattttatcattgctggtacgtccataataatcgatgcaatgtaactatatgtttgtgccgatgaaccaatgcgacatctagagttggaatcgcgatatataccagtggtacgaatcttgcgatatatagtgttgtataaagcggcatattgttttgcgacaatttagcgttagttgcgacattgaacgcaagtcttgtgacatataccattgaTCTTTCAT-TCTGGAGTGTGCTTACACATGCTCTATATTCTTACTCATG-TTCTATATACTTGCTCCGATACAAAACCGTCCAAATTTCTTACCTTTAGCTAGTTTTCGTTACAGTACTCTGTACCACAGGTGACCG-ATATAGTGACCCGTT---TAcactcaaatattaa
gi|10 : ---------ATGAGTATATGATCACAATGAATGAAAAAACAATGAGTACTGTATTAAACAAGCACTGTTGCTAGGGTAGG----TCACTCTG-----------TG--GT--A---A----------CGTT------------------AA------------------ATGT--CGC------A--TCGACGCTAAA-TGTCGCAnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnccccccccccgacccccctaaaattaaaacgctcctacacccatgagtatatgatcacaatgaatgaaaaaacaatgagtactgtattaaacaagcactgttgctagggtaggtcactctgtggtaacgttaaatgtcgcatcgacgctaaatgtcgcatccgacgttatatacgcacgttatatacgctgacacca
gi|11 : tctttcattctggagtgtgcttacacatgctctatattcttactcatgttctatatacttgctccgatacaaaaccgtccaaatttcttacctttagctagttttcgttacagtactctgtaccacaggtgaccgatatagtgacccgtttannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnccccccccccgacccccctaaaattaaaacgctcctacacccTCTTTCAT-TCTAGATTGTGCTT-------------------ACTCGTG-TTCTATATACTTGCTCCGATACAAAACCGTCCATAATTCTTACCTTTCGCTTGTTTTCGGTACAGTACTTTGAACCACAGGTGACCATTTAT----ACCCGTT---CAtccgacgttatatacgcacgttatatacgctgacacca
gi|11 : ---------ATGAATATATGATTACAATGAATACAGAAAAAATTAATATTGTATTAAGCTAGCATTATTGCTAGGTTGGA----TCACTTTG-----------TA--GT--A---A----------CGTT------------------AA------------------ATGT--TGC------A--CCGACGCTCAA-TGTCGCAACtacatacacgtttannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnatctccccctcaataattaaaatgttcctacatccatgaatatatgattacaatgaatacagaaaaaattaatattgtattaagctagcattattgctaggttggatcactttgtagtaacgttaaatgttgcaccgacgctcaatgtcgcaaccgacgttatatgtcgcaacgttgacaccaacgct
gi|12 : tctttcattctagattgtgcttactcgtgttctatatacttgctccgatacaaaaccgtccataattcttacctttcgcttgttttcggtacagtactttgaaccacaggtgaccatttatacccgttcatacatacacgtttannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnatctccccctcaataattaaaatgttcctacatccTCTTTCAT-TCTGGATTGTGCTTT------------------GCTCATG-TTCTATATACTTCCTCCGATACAAAACCGT------------CCTCTCGCTTGTTTTCAGT--AG----------CACAGGTGACCA-ATATAGTGAACCGTT---cgacgttatatgtcgcaacgttgacaccaacgct
gi|12 : ---------ATGAATATATGATCACAATGAATACAAAACCAATGAGTCTTATATTAAAAAAGTACTCTTGCTAGGGTAGAAAGATCACTCTG-----------TG--TT--A---A----------CGTTTATTGTCGCACCCAAGCTAA------------------ATGT--CGC-----AA--CCGACGATATA-TGTCGCAACTCTGACAaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntgcccccaattattaaaacacccatgaatatatgatcacaatgaatacaaaaccaatgagtcttatattaaaaaagtactcttgctagggtagaaagatcactctgtgttaacgtttattgtcgcacccaagctaaatgtcgcaaccgacgatatatgtcgcaactctgacactaacgca
gi|13 : tctttcattctggattgtgctttgctcatgttctatatacttcctccgatacaaaaccgtcctctcgcttgttttcagtagcacaggtgaccaatatagtgaaccgttaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntgcccccaattattaaaacacccCTCTTAT-TCTGGAGTGTGTTT-------------------ACTCATG-TTCTATAAACTTGCTCAGATACAAAACCGTCCATATTTCTTGCCTTTCACTTGTATTCA-----------------------GAACA-ATATAGTTACCCGTT---TAATGTTCAGATT---------Actaacgca
gi|13 : GAGTATGTGATCACAATGAATACAAAAACAGTGAGTGTTGTATTAAACAAGCATCGCTGCTAGGGTACA----TCGCTCTG-----------TG--GT--A---A----------CGTT------------------AA------------------ATGT--CGC------A--CCGACGCTTAA-TGTCGCAACGnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnagttcccctcataatttaaacgctcctttacccaagagtatgtgatcacaatgaatacaaaaacagtgagtgttgtattaaacaagcatcgctgctagggtacatcgctctgtggtaacgttaaatgtcgcaccgacgcttaatgtcgcaacgt
gi|14 : ctcttattctggagtgtgtttactcatgttctataaacttgctcagatacaaaaccgtccatatttcttgcctttcacttgtattcagaacaatatagttacccgtttaatgttcagattannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnagttcccctcataatttaaacgctcctttacccaaTCTTTCAT-TCTGGAGTGTGCTT-------------------ATTCATG-TTCTGTATACTTTCTCCGATACAAAACCATCCATATTTCTTACCTTGCGTTt
gi|14 : ---------ATGAATATATTATCACAATGAATACAAA---------------------CAAGCACTCTTGCTAGGGTAGA----TCACTCTG-----------TG--GT--A---A----------CATT------------------AA------------------ATGT--CGCATCGAAA--CCGATATTATA-TGnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnccccccccctcccccatccccaattaattaaaaagctcacacatccatgaatatattatcacaatgaatacaaacaagcactcttgctagggtagatcactctgtggtaacattaaatgtcgcatcgaaaccgatattatatg
gi|15 : tctttcattctggagtgtgcttattcatgttctgtatactttctccgatacaaaaccatccatatttcttaccttgcgttnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnccccccccctcccccatccccaattaattaaaaagctcacacatccTTTCTT-TCTGCAGTGTGCTT-------------------ACTCATGATTCTATATACTTGTTCCGATACAAAACCGACAATATTTCTTACCTTTCGCTTGTTTTCGGTACAGTAAACTGT
gi|15 : ---------ATGAATATATGATCACAACGAATTCAAAAACAATCAGTGT--------------ACTCTTGCTACGGTAGA----CGACTCTG-----------TG--GT--A---A----------CGTT------------------AA------------------TTGT--CGC------A--TCTATGGTAAA-TGTCGCAA--CCGACAtactcacgttgccaccatccccaataacttaaacgctcctgcacccatgaatatatgatcacaacgaattcaaaaacaatcagtgtactcttgctacggtagacgactctgtggtaacgttaattgtcgcatctatggtaaatgtcgcaaccgacatca
gi|16 : tttctttctgcagtgtgcttactcatgattctatatacttgttccgatacaaaaccgacaatatttcttacctttcgcttgttttcggtacagtaaactgttactcacgttgccaccatccccaataacttaaacgctcctgcacccAATGAAT-----TCGACACA----------------CCATTTACATT-AAAACAAACATA-ACAAAGAA---AGAAAAAGCTGCATTCAACATAC-----AAA------T-----------AATCATAATTTACGGGC------TCGTTGC--ACGGG------ACATTATTAGTACTGTTT-AAATAAACAC--TACACATTTCAATGAATAATTACGACAATGTT--TATATACGCAAGCTCATGAGCGCAATA---------ATAAATATATGAtca
gi|17 : t---------ATGAATATGTGATCACAATGAATACAAAAACAGTGAGTGTTGTATTAAACA--------------GATAGA----TCGCTCTG-----------TG--GTTTA---A----------CGTA------------------AA------------------ATGT--CGC-----A---CCGACGCTAAA-TGTCGCAACGCTGACA
gi|18 : acattaataaaatcatttaaaggaggtatacttgatgacgaattatttattgaaacgctcctacacccAAGGTTAAAACTGACCTTTTAAAACTGTATTGTTGCAAACATTTAATGAACGAATGGGTGGTATTT--TACATACCGTA----AAACACCATTTACATT-AAAACAGACATTTGCAAACAAAGTAGAAAAAGCTGCTTTCAACATcttacgcta
gi|19 : CTCTAAT-TCTGGAGTGTGATT-------------------TCTCATA-TTCTATATACATGCTCCTATACAAAACCGTCCATATTTCTTACCTTTCACTTGTTTTCGGCACAGTACACT-TACAACAGGTGACCA-ATATAGTGACCCGTC---TAATGTT
gi|2 : TCTTTCAG-TCTTGAGTGCGCTT-------------------ACTCCTG-CTCTATATACTTGCTCTGATACACAACCGTCTATATTTCGTAC-TTTCACTTCTTTTCTGTACAATCTCCTGTACCACAGATGATCA-ATATAGTAATCCAAT---TAATGTTAAAATT---------AAGCTTTATCTTTGCAAACATTTAAAGTATGAATGAATG----TCGACACATACCGTA----AAACACCATTTACATT-AAAACAAACATTTACAAAGAA---AGAAAAAGCTGCATTTAACACAC-----AAACAATCAT-----------AATTTACCGG------C------TCGTTGC--ATGCT------ACATCATTAGTGTTGTTT-AAATGTACAC--TGCGCATTTCATAGAACAATTACGAAACTGTT--AA-ATACGCAAGCTGATGAGCGCAATA---------ATACATACATGGTCACAATGAATACAAAAACAATGAGTGATGTATTAAACAAGCACTGTTGCTAGGGTAGA----TCACTCTGGTAACATTAAATGTCGC--ATCGA----------CGCT------------------AA------------------ATGT--CAC-----AA--CCGACGTTATA-TGTCGCAACGCTGACAca
gi|20 : CTTTCATCTTTGGAGAATGCAT-------------------AATCATC-TTCTATATACTTTCTCCGATACAAAACCGTCCATATTTCTTATCTTTCGCTTGTTTTCGGCACAGTACTCTGTTCCAAAGGTGACCA-ATATCGTGATCCTTT---Tctaacgct
gi|21 : TTTCAT-TCTGGAGTGTGCTT-------------------ACTCATG-TTTTATATACTTTCTCCGATACAAAAC-GTCAATATTTCTTACCGTTCGCTTGTTTTCAGTACAGTACTCTGTACCACAGGTGACCA-ATACAGTGACCCGTT---T
gi|22 : aTCTTTCAT-TCTGGAGTGTGCTT-------------------ACTCATG-TTCTATATACTTGTTGCGAAACAAACATGTACATGTTTCTTACC----------TTTCGGTACATTACCCTGTACCATAGGTGACCA-ATATAGTGACCCGTT---TAATGT
gi|23 : TCTTTCAT-TCTGGAGTGTGCTT-------------------ACTCATG-TTCTATATACTTGCTCCGATACAAAACCGTCCATATGTCTTA-CTTTCGCTTGTTTT------------CTGTACCACTGGTGACCA-ATATAATGACCCGTT---TAATGTTc
gi|24 : AGA----TTACTCTG-----------TG--GT--A---A----------CGTT------------------AA------------------ATGT--CGCGTCGAAA--CCGATGATAc
gi|25 : annnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnATGAATACAAAAA-AATGAGTGTTGTATTAAACAAGCACTGTTGCTAGGGTAGA----TCCCTCTG-----------TG--CT--A---A----------CATT------------------AA------------------ATGT--CGC-----AA--Cactattagg
gi|26 : cctccccttccccccagtaattataacactcatacatcc---A----------CGCT------------------AA------------------ATGTTTCGC-----AA--CTGACGTTATA-TGTCGCAAGACTGACgct
gi|26 : ataacgcactgagT--G---A----------CGTT------------------AT------------------ATGT--CGC-----AAGACTGACGTTAAA-AGTCGCAACgttaaaagtcgcaaccaatagcgaaacaaacgttttcattcaaatcacgcttttataca
gi|27 : ataacgcactgagacgctaaatgtttcgcaacATGAGTTTTGTATTAAACAAGCACTGTTACTATGGTAAA----TCACTCTG-----------TG--GT--A---A----------CGTT------------------AA------------------AAGT--CGC------A--CAGACGCTAAA-TGTCACAAGGCTGACAcaatagcgaaacaaacgttttcattcaaatcacgcttttataca
gi|28 : TCTTTCGT-TTTGGAGTGTGTTT-------------------ACTCATG-TTTTATATACTTGCTCCAATACACAACCGTCCATAATTCTTACATTTCGCTTGTTTCCAATATActaacg
gi|3 : TCTTTCAC-TCTGGAGTCTGCTA-------------------ACACATG-TTCTATATACTTGCTTCTATACACAACCGTCCATATTTCTTACATTTCGCTTGTTTT------AGT------TA-CAC-----------TATAGTGACCATTT---TAATGTTAAAATT---------ATATTGTGCCTTTACAAACATTTAAAGAATGAATGAATG----TCAACACATACCGTA----AAACACCGTTTACATT-AAAACAAACACTTACAAAGAA---AGAAAAAGCTCCATTAAACATAC-----AAA------T-----------AATCATATTTTTCGGAC------TCGTCGC--ACGGG------ACTTTATTAGTACTGTTTAAAATAAACAC--TTCAAACTTCGTTGAACAATTACGATACTGTT--TATATACGCAAGCTGATGAGTGCAATACTATTTAATATATATATATGATCACAATGAATACAAAAATAATGAGTGTTGTATTAAACAAGCACTGTTGCTAGGGTAAA----TCACTC-------------TG--GT--A---A----------CGTT------------------AA------------------ATGT--CTC------A--TCGACGCTAAA-TGTCACAA--CCGACAacga
gi|30 : ---------ATGAATATATGTTTACAATGAATACATAAACAATA-----TCTATTAAACAAGttatatgcggcaacgctgacaccaacgct
gi|32 : ccacatgaaaagttccttcatccT--A---A----------CGTT------------------AA-------------------TGT--CGC-----A---CTGACGCTAAA-TGTCGCAAC
gi|4 : tggttttgcgacacttTTTCAG-TCTTGAGTGTGTTA-------------------ACTCCTG-TTCTATAAACTTGCTCCTAAACTCAACTGTACATAGTTCTTACATTTCGCTTGTTTTCGTTGCAGTACCCTGTACCACAGCTGACCA-ATATAGTGAATCTTT---TAATGTTAGATTT---------AAACTGTATCTTTGCAAACATTTAAAGAAAGAATGGATG----CTGACATTTACTGTA----AAACACCATTTACATTAAAAAAAAACACTTACAAAGAA---AGAAAAAGCTGCATTCAGTTTACAAATGAAA------T-----------AATTATAATTCACGGGC------TCGTCCC--ACGGG------ACATTGTTATCATTGTTT-AAATAA-------ACAAATTTCAATGAATAATTACGATACTGTTTATATATACGCAAGCGCATGAGCACAATA---------ATAAATATATGACCATAATGAATACAGAACCAATGAGTGATGTATTAAACAA--------GCTAGAGTAGA----TCACTCTG-----------TG--TT--A---ATGATAAATGTCGCT------------------AA------------------ATGT--TGC-----AA--CTGAATTTATA-TGTCGCAACGCTGACA
gi|5 : TATATACTTGTTGCTATACACTATCGTCCATATTTCTTACCTTTCGCTTGCTTTCGGTACAGTACCCTGTACCACAGTTGACCA-ATTTAGTGACTCTTT---TAATGTTTAAATT---------AAACTGTATCTTTTCAACCATTTAAAGAATGAACCAATA----TCGACACATACCGTAGAACAAACACCATTTACATT-AAATCAAACATGTACAAAGAA---ATAAAAAGGTGTATTCAACATAC-----AAA------TGA---------AATA------------A------TCATAATTTACGGGCTCATGGCATTTTTAGCATTGTTT-AAATATATATCATACAA--TTCAAAGAACAATTTCGATACTGTT---ATATACGTAAGCGGGTGAGCGCAATA---------GTAAATATATGATCACAATGAATACAAAAACAACGAGTGTTGTATTAAACAAGCACTCTTGCTAGGGTCGA----TCACTCTG-----------TG--GT--A---A----------TGTT------------------AA------------------ATGT--CGC------A--CCGGCGCGAAA-TGTCGCTACcaaacgct
gi|6 : TCTTTCAG-TCTTGAGTGTGCTT-------------------ACTCATG-TTCTATATACTTGCTCCTATACACAATCGTCCATGTTTATTACCTTTCGCTTGTTTTCGGTACAGTACCCTGTACCACAGGTGACCA-ATATAGTGACCCTTT---TAATGTTAAAATT---------AAACTGTACATTTGCAATCATTTCAAGAATGAATGAATG----TCGAAACATACCGTC----AAACACCATTTACATT-AAAACAAACATTTACAAAGAA---AGAAAAAGCTGCATTCAAAATAC-----AAA------T-----------AA---------------------TCGTCGC--ACCGG------ACATTATGAGTATTGTAT-AAATAAACAC--TACAAATTTCAGTAAACAATTATGATACTGTT--TATATACGCAAGCGAATGAGTGCAATA---------ATAAATATATGATCACAATGAATACAAAAACACTGAGTGTTGTATTAAACAAGCACTTTTGCTAGGGTAGC----TCACTCTG-----------TG--GT--A---A----------CATT------------------AA------------------ATGT--CGC-----AA--CCGACGTTGTA-TATCGCAACGCTGACAcgacgttagagtttatgtcgtaacgctgacaccaacgcta
gi|7 : TATATACTTACTCCGTTATACAACGGTCCATATTTCTTAACTTTCGCTTGTTTTCGGTACAGTACCCTGTACCACAGGTGATCA-ATATAGTGACGCTTTAAATAACGTTAAA-TT---------AAACTGTATATTTGCAAACATTTAAAGAAGAAATGAACG----TCGTCACATACCGTA----GAACACCATT-------AAAACAAACATTTAGAAAGAA---AGAAAAAACTGCATTCAACATAC-----AAAAAATCAT-----------AATTTACGGG------C------TCGTCGC--ACGGG------ACATTATTAGTATTGTTT-AAATAAACAC--TACAAATTTCAAC----------------------ATATACGCACGCTGATGAGCGTA----------------------GATCACAATGAATACAAAAACAATGAGTGTTGTATTAAACAAGCACTGTTGCTAGGGTAGA----TCATTCCA-----------TG--GT--A---A----------TGTT------------------AAATATTGCACCAAAGCTAAATGT--CAC-----AA--CCGACGTAATA-TGTC
gi|8 : TATATACTTACTCCGTTATACAACGGTCCATATTTCTTAACTTTCGCTTGTTTTCGGTACAGTACCCTGTACCACAGGTGATCA-ATATAGTGACGCTTTAAATAACGTTAAA-TT---------AAACTGTATATTTGCAAACATTTAAAGAAGAAATGAACG----TCGTCACATACCGTA----GAACACCATT-------AAAACAAACATTTAGAAAGAA---AGAAAAAACTGCATTCAACATAC-----AAAAAATCAT-----------AATTTACGGG------C------TCGTCGC--ACGGG------ACATTATTAGTATTGTTT-AAATAAACAC--TACAAATTTCAAC----------------------ATATACGCACGCTGATGAGCGTA----------------------GATCACAATGAATACAAAAACAATGAGTGTTGTATTAAACAAGCACTGTTGCTAGGGTAGA----TCATTCCA-----------TG--GT--A---A----------TGTT------------------AAATATTGCACCAAAGCTAAATGT--CAC-----AA--CCGACGTAATA-TGTC
gi|9 : TTCAG-TCTTGATTGTGCTTT------------------ACACATG-TTCTATATATTTGCTCCTATACACAACCGTCCATATCTCTTAACTTTCGCTTGTTTTCGGTACTGTCCTCTGTACCGCAGGTGATTA-ATATAGTGACC-ATT---TAATGATAAAGTT---------AAACTGTATCTTTGCATGTCTTAAAAGAATGAATGAATG----TAGACACATACCGTA----AAACACCGTTTACATT-AAAACAAACATTTACAAAGAA---AGAAAAAACTGCATTCAACATAC-----AAA------TGAAATAATCATAATT------------TACCGGATCGTTGC--AGGGG------ACATTATTAGTATTGTTT-AAATATACAC--AACACGTGTCAATGAACAATTACGATAATGTC--TATATACGCAAGCTGATGAGTGCAATA---------ATAAATATATTATAACAATGAATATAAAAATAATGAGTGTTGTA
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|29 ): ANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCCACTTCACCCATAATTGAAAAGTTCCAATATCC
Unaligned ( gi|31 ): TTATGTCGCAAGCTTTGTACAGCCGGTATATGTTGCGACTGTGGGGATCGCTGATTGAAA