lowQualScore : 1111111111111111111111111111111111111111111111111111111111111111111111111111111 222222222222222222222222222222222222222222222222222222222222222
lowQualScore : 1 222222 333333 111 111111 1 1111111 111111 11 11111 2222222222222222222222222222222222222222222222222222222222222222222222222222222 22222222 2222222222222 1 2 11 111111111 1 22222222222222 111111111111111111111111111111111111111111111111111111111111111 1 22 1 22 1 1 1 1 2222222222222222222222222 1111111 111 33333333333 111
lowQualScore : 3 666666 333333 0 55 222 000000 2 99999 555 4 5 88888 0000000 000000 44 1 11 8 4 00000 4 0000000000000000000000000000000000000000000000000000000000000000000000000000000 3 6 00000000 3 3 8888888888888 44 3 6 5 6 1 00 111111111 1 1 4 11111111111111 333333333333333333333333333333333333333333333333333333333333333 55 55 55 3 7777 88 44 3 5 4 11 1 5 4 1 00 555 0 5 4 999 2 66666 2222222222222222222222222 2 9999999 555 222 0 66666666666 555 0 999999
lowQualScore : . ...... ...... . .. ... ...... . ..... ... . . ..... ....... ...... .. . .. . . ..... . ............................................................................... . . ........ . . ............. .. . . . . . .. ......... . . . .............. ............................................................... .. .. .. . .... .. .. . . . .. . . . . .. ... . . . ... . ..... ......................... . ....... ... ... . ........... ... . ......
lowQualScore : 3 000000 000000 6 22 555 555555 5 11111 888 4 0 33333 8888888 555555 44 1 00 0 0 00000 0 6666666666666666666666666666666666666666666666666666666666666666666666666666666 3 7 22222222 3 3 8888888888888 66 3 8 0 0 8 33 444444444 4 4 2 44444444444444 888888888888888888888888888888888888888888888888888888888888888 00 00 00 3 7777 66 22 1 0 8 22 0 5 8 2 88 888 3 0 7 000 0 99999 9999999999999999999999999 7 4444444 000 666 8 88888888888 000 5 666666
consensus : NNNNNNNNNAGTGTAACATCAACATTTAGT----A-AAAAAA--C-AATTT-TAT--TATAAATTGCCATA------TGTGGTATGTCTCTTA-----AT---TTACTTGATA-----AAA------ATA------CAGTGTTACA--A-TAAA-T-----T-TGTNT--------A---AT-GA-C----ATCTC--TAC-A-AT--GNAACAATAAAGTTATATGATG---A-TC---TT---A-TTTATTG-TTAA----AGTT-C-TT-------G-AT--T--AACA-TATCGGTGCGGTTACTGCGAAGCACACCNACCTGCTTCCTT------GG-TTTTTCGTCTCTACATTCTATTCGCTTTGTGAGGCCCT--------------GAG--------------AAATAAATAG-GAAAC-------G---CT-----T----N---------TA--T--GAT--GTTCATGCCGTCT----ATT--GGCAAGCGCGATATATCAAGCGTT--TATATAT-AAAATCATGGGCGTTGTCATGACTTGCAAAGATTACAGTTATCTTTATTTGCATAATCAGAANTGATA---TTAGCACTGACCAAA--TANTTTTATCAAGTAA---A-TT-------AA-----GA----GACATACCACA-T-----ATGGCAAT---TTATA--ATAAACTC--GTTT--TTTTT---ACTAAATGTTGAT------GTTACGTG
Reference ( gi|2 ) : TCGAATTAAAGTGTTACATCAACATTTAGT----A-AAAATA--T-AATTT-TAT--TATAAATTGCCATA------TGTGGCATGTCTCTTA-----AT---TTATTTGCTA-----AAA------ATA------CAATGTTACA--A-TAAA-T-----T-TGTTT-------TA---AT-AG-C----ATCTT--T-C-A-AT--GTAAGACTATAGTTATATGATG---A-TC---TT---A-TTTATTG-TTAA----AATT-C-TT-------G-AC--T--AACA-TATCGGTGCGGTTATTGTTAGGCACACTGACCTGCTTCCTT------GG-TTTTTCGTCTCTACATTCTATTCGCGTTGTGAGGCCCT--------------GAG--------------A--------------C-------G---CG-----T----T---------TA--T--GAT--GTTTATGCCGTCT----ATT--GGCAAGCGCGATATATCAAGCGTT--TATATAT-AACATTATGGGCGTTGTCCCGACTTACAAAGATAACAGTTATCTTTATTTGCATAATCAGATCTGATA---TAAGCACTGCCCTAA--CATTTTTATCAAGTAA---A-TA-------AA-----GA----GTCGTGCCACA-A-----ATGGCAAT---TTATA--ATAAAATT--GTTTTGTTTTT---ACTAAATGTTGAT------GTTACGTG
gi|16 : AATGTAACATCAACATTTAGT----ATAAAAGA----AATATATAT--TATAAATTGCCGTA------TAAGGCATGTATCTTA-----AT---TTAATTGATA-----AA
gi|8 : tgGTGTTACATCAATATTTAAT----G-AAAAAA--CGAATTT-AAG--TATAAATTGCCATT------TGTGTTATGTCTCTTA-----AT---CTACTTGATA-----AAA------CTA------
gi|6 : tatgttacaacagatttgtatgagacatctctacggatggtacaataaagtatgtgttgttcttcttatttattgttatttcttttaatcacatatcggtgcggttagtgtgaagcaacccacctgcttcctttggttttcgactttacattttctttgctttgtgaggccctgagaaataaatagtgaaacgcttatatgatgttcatgccgtttattggcaagcgcgatacaacaagggtttatatataaaatcattggctttattaagattacagttctctttatttgcataatcagaagtgatataagcactgattaaaTGTAACAGCAACATTTAGTTGTAA-AAAAAA--C-GAGTT-TAAA-TATAAATTGCAATA------TATGGTATGTCTCTAA-----AG---TTGCTTGATA-----AAA------GTA------cagtacgcattaaaacttatatga
gi|5 : tatcccatgtagaactagtgtactgttacactactaaatttgtatataatatttcccaatgttacatgaatatttattgcttttcttccatttcgacggtgttttatcggtactgttactgcgaagcaaccaacctgcttccttggatttttcttctctacatcctattcgctttttgaggccatgagaaataaatatcgaaacgcttatatgatgttcatgccgtctattggcaagcgtgatatatcaagcgtttatatataaaatcatgggtgttatcataacctgcaaagattacagttctctttatttgcataatcagaagtgatattagcactgaccaaaTGTAACAGCAACATTTAGTTGTAA-AAAAAA--C-GAGTT-TAAA-TATAAATTGCAATA------TATGGTATGTCTCTAA-----AG---TTGCTTGATA-----AAA------GTA------gt
gi|1 : tatcccatgtagaactagtgtactgttacactactaaatttgtatataatatttcccaatgttacatgaatatttattgcttttcttccatttcgacggtgttttatcggtactgttactgcgaagcaaccaacctgcttccttggatttttcttctctacatcctattcgctttttgaggccatgagaaataaatatcgaaacgcttatatgatgttcatgccgtctattggcaagcgtgatatatcaagcgtttatatataaaatcatgggtgttatcataacctgcaaagattacagttctctttatttgcataatcagaagtgatattagcactgaccaaaTGTAACATCAACATTGAGT----G-AAAAC---C-GAGTT-TAT--TATAAATTGCCATA------TGTGGCATGTCTCTTT-----AT---TTACTTGATG-----AAA------CTATTTGGTCAGTGCT--G--A-T--A-T-----T-CGTCC-------TA---AT-gt
gi|3 : gtcacgactgctttgcatattataatttctgctatactatttactgatttctggacttcagcaacactaaagttttacatcgaatatttatcttcatcagtgtaacaataaagtttgtgttatctccattaatgaaacatgaagatttatggtaactctttcattttaacgataattacatcgatttcatcggtatcagtgcggtaactgtgaaacacaccggcctatcggctgttcgtccctacactatattcgctttgtgaggtcatgagaaataaattgacaaacgcttatatgacgtgcacgccgtctattttggcaagtgcgttttaccaagcgtttatatataaaaccatcggcgctgtcatgacttgcaaagattacagttatctttatatgcataGTAACAGCAAAATTTAGT----A-AAAAAAACG-AGTTT-AAA--TATAAATTGCCATT------TGTGGTATGTCTCTAA-----AT---TCACTTGATA-----AAA------ATA------
gi|15 : atcaattttcattgtatggcgattcatggttttatgttatggtgcatatcatatgttagcatgtgtttatactgttacaatataattatatatgacatctcccaatataacaatataattattatttattgtaaagtttttaattaacatatcggggccgttactgagaagtaacccacttgcttccttgcttttcttctctacattttatttgctttgtgaggccctgagaaataaatagttgaacgtttataggatgttcatgtcgtatattggcaagcgcgataaatcaagcgtttatatatgaaaatcatgggcgtcatcatgacttgcaaagattacagttctctttatttgcataatcagaagtgatattagcgctgaccaaaGTAACATTAACACTTAGT----G-AAAAGA--C-ATGTT-TAT--TATAAATTGTCATT------TGTGGTAAGTCTCCTATTTTTATAAATTACTTGATA-----GAA------ATA------
gi|9 : aatatgcgccatgaaatctaaatACATCAACATTTATT----A-AAAAAA--A-ATTTT-TATCATATAAATTGCCATA------TGTGGCATGTCTCTTA-----AT---TTACTTAATA-----AAA------ATA------
gi|7 : tgtaacaataactttatatgtgacatctctacggctggtacaattaagtaatgatgttattttaatttattgtttaagttcttgattaaactatttgtgcggttactgcgaagcaacccacctgcttctttggtttttcgtcgttacattcttttcgttttgtgaggcccttaaaaataaatagtgaaacgcttataattatgatgttcatgccgtctattggcaagcacgatacatcaagcgtttatatataaaatcattggagttatcatgacttgtaaatattacagttttctttatttgcataatcagaagtgacattagcactgaccaaaCATCAACATTAAGTT---A-AAAAAA--T-AATT---AT--TATCAATTGCCATAGGTGTATGTGGAATGTCTCTTT-----AT---TAATTTGATG-----AAATGTTTGGT-------CAGTGTTAAT--A-TCAA-T-----TCTGATCATGCAAATAAAGAT-AA-CTGTAATCTT--TGC-A-AG--GCATGACAATACCC-----ATG---A-TT---TT---A-TATAT------A----AACG-C-TT-------G---------ATA-TATCGt
gi|4 : aaatgacataataaagtatatgctgtttattctatttattgttattgttcttgattgacatatcagtgcggttactgtgaagcaacccacctgcttccttgcttttttgtctctacattttattcgctttgtgaggccctgagaaataaatagtgaaactcttataaaacaatatgatattcatgccgtccattggcaagcgAACATTTAGT----GCAAAACC--G-AGTTT-AAT--CA-AAAGTGTCATA------TATGGTATATCTCTTA-----AT---TTACTTGATA-----AAgtacagttacgtgtatatacatacatatattcacaacatttact
gi|12 : gaatgagatgtttttattcgatatccgtaaaatactatatataaatgtatattgtttcactcagttctgtaacaataaatttatatgatgttcttatttattgtttaagttcttgattaatatatcggtgcggttactatgaagcacaccgacgtgcttccttggttttacgtctctacattctattcactttgtgagaccctaagaaataaacggtgaaacgcttatatgatgttcatgccgtcttttggcaagcgtgatatatcaggcgtttatatataaaatcatgggcgctgtcatgccttgcaaagattacagttatctttatttgcataatcagaaatgatatttttagcactgaccaaataaAT--CACAAACGGCCATA------TGTGGTATGTTTCGTA-----AT---TTACCTGATA-----AAA------agtagtatatat
gi|4 : acaataaattatatgatgatccttttatttattgttgaagttcttggttaacatatcggtgcggatactgtgaagcacaccgaccaacttccttaaagttggtttttcgtctctacattctattcccattgttagtcgctgagaaataaatagtgaaacgcttataatatgtttatgctgtctattgacaatcgcgatatatcaagcgactgtatatggattataggcgttgtcatgccttgcaaaagttaaagatatctttatttgtataatcaaaactgatattagcactgaccaaataT---TTATTCGATATCCGTAAA------ATA------CTATAT------A-TAAA-TGTATAT-TGTTT-------CA---CTCAG----------T--T-C----T--GTAACAATAAATTTATATGATG---T-TC---TT---A-TTTATTG-TTTA----AGTT-C-TT-------G-AT--T--AATA-TATCGGTGCGGTTACTATGAAGCACACCGACGTGCTTCCTT------GG-TTTTACGTCTCTACATTCTATTCACTTTGTGAGACCCT--------------AAG--------------AAATAAACGGTGAAAC-------G---CT-----T----A---------TA--T--GAT--GTTCATGCCGTCT----TTT--GGCAAGCGTGATATATCAGGCGTT--TATATAT-AAAATCATGGGCGCTGTCATGCCTTGCAAAGATTACAGTTATCTTTATTTGCATAATCAGAAATGATATTTTTAGCACTGACCAAA--TA-ATTTATCAAGTAA---A-TT-------AA-----GA----GATATACCATA-T-----ATGACACT---TT-TG--ATTAAACTCGGTTTTG----C---ACTAAATGTT
gi|3 : gaatgagatgtt------ATA------C--TGTTACA--A-TATA-A-----T-TATAT------------AT-GA-C----ATCTC--C-C-A-AT--ATAACAATATAATTAT-----------------T---A-TTTATTG-T-AA----AGTT-T-TT-------A-AT--T--AACA-TATCGGGGCCGTTACTGAGAAGTA-ACCCACTTGCTTCCTT------G--CTTTTCTTCTCTACATTTTATTTGCTTTGTGAGGCCCT--------------GAG--------------AAATAAATAGT----T-------GAA-CG-----T----T---------TA--TAGGAT--GTTCATGTCGTAT----ATT--GGCAAGCGCGATAAATCAAGCGTT--TATATATGAAAATCATGGGCGTCATCATGACTTGCAAAGATTACAGTTCTCTTTATTTGCATAATCAGAAGTGATA---TTAGCGCTGACCAAA--TATTTTTATCAAGTGA---A-TT-------TA-----GA----GACATACCACA-A-----ATGGCAAT---TTATAT-TTAAACTC--GTTT--TTTTT---ACTAAATTTTGCT------GTTACagtagtatatat
gi|1 : atcaattttcattgtatggcgattcatggttttatgttatggtgcatatcatatgttagcatgtgttt------CAGTGTAACA--A-TAAAGT-----T-TGTGT-------TA---------------TCTCCAT-T-A-AT--GAAACATGA-AGATTTATGGTA---ACTC---TT------TCATT--TTAACGATAATTACATC-------G-AT--TTCATCGGTATCAGTGCGGTAACTGTGAAACACACCGGCCTA-----TC------GG-CTGTTCGTCCCTACACTATATTCGCTTTGTGAGGTCAT--------------GAG--------------AAATAAATTGACAAAC-------G---CT-----T----A---------TA--T--GAC--GTGCACGCCGTCT----ATTTTGGCAAGTGCGTTTTACCAAGCGTT--TATATAT-AAAACCATCGGCGCTGTCATGACTTGCAAAGATTACAGTTATCTTTATATGCATAATTAGGACGAATA---TCAGCACTGACCAAA--TAGTTTCATCAAGTAA---A-TA-------AA-----GA----GACATGCCACA-T-----ATGGCAAT---TTATA--ATAAACTC--G----GTTTTC---ACTCAATGTTGAT------GTTAC
gi|11 : gtcacgactgctttgcatattataatttctgctatactatttactgatttctggacttcagcaacactaaagttttacatcgaatatttatcttcatAATGTTACA--A-TACA-T-----T--AT--------------AT-GA-T----ATCTC--TACGA-AT--GGTACAATAAAGT-ATATGTTG---T-TT---TT---A-CTTATTG-TTAA----AGTT-C-TT-------G-AT--C--AACA-TATCGATGCAGTGACTGTGAAGCA-ACCCACCTGCTTCCTT------GG-GGTTTCGTCTCTACGTTCTGTTCGCTTTGTGAGGCCCT--------------GAGAAATAAATAGTGAAA--------------C-------G---CT-----T----A---------TA--T--GAT--GTTTATGCCGTCT----ACT--GGCAAGCGCGATACATCACGCGTT--TATATAT-AAAATCATAAGCATTATCa
gi|8 : acgttttacgctttctgttgtgctaaacatcaacatgtttgctaagtatgatatacttttccataatacataggcgtgatttacaacatcggtcaATGTTACA--A-CAGA-T-----T-TGT--------------ATGAGAC----ATCTC--TAC-GGAT--GGTACAATAAAGT-ATGTGTTG---T-TC---TTCTTA-TTTATTG-TTAT------TT-C-TT-------TTAA--T--CACA-TATCGGTGCGGTTAGTGTGAAGCA-ACCCACCTGCTTCCTT------TG-GTTTTCGACTTTACATTTTCTTTGCTTTGTGAGGCCCT--------------GAG--------------AAATAAATAGTGAAAC-------G---CT-----T----A---------TA--T--GAT--GTTCATGCCGTTT----ATT--GGCAAGCGCGATACAACAAGGGTT--TATATAT-AAAATCATTGGCTTTATT----------AAGATTACAGTTCTCTTTATTTGCATAATCAGAAGTGATA---TAAGCACTGATTAAA--TAGTTTTATCAAGTAG---A-TT-------AA-----GA----GACATAACACA-A-----ATGGCAAT---TTATA--CTTAAATTC-GTT---TTTTC---ATTAAATATTGAT------GTAACatg
gi|9 : tTGTAACA--A-TAAC-T-----T-TATAT------------GT-GA-C----ATCTC--TAC-G-GCTGGTACAATTA-AGT-A-ATGATGTT-A-TT---TT---AATTTATTG-TTTA----AGTT-C-TT-------G-AT--T--AAAC-TATTTGTGCGGTTACTGCGAAGCA-ACCCACCTGCTTCTTT------GG-TTTTTCGTCGTTACATTCTTTTCGTTTTGTGAGGCCCTTAAAAATAAATAGTGAA--------------A--------------C-------G---CT-----TATAAT---------TA--T--GAT--GTTCATGCCGTCT----ATT--GGCAAGCACGATACATCAAGCGTT--TATATAT-AAAATCATTGGAGTTATCATGACTTGTAAATATTACAGTTTTCTTTATTTGCATAATCAGAAGTGACA---TTAGCACTGACCAAA--TATTTTTATTAAGTAA---A-TT-------AA-----GA----GACATGCCACA-T-----ATGGCAAT---TTATATGATAAAA----ATTTT-TTTTT---AATAAATGTTGAT------GTTaccagtacgcattaaaacttatatga
gi|6 : TGTTACACTACTAAA-T-----T-TGTAT------------AT-AA-T----ATTTC--C-C-A-AT--GT-----------TACATGA-----A-T---------A-TTTATTGCTT--------TT-C-TTCCATTTCG-ACGGT--GTTT-TATCGGTACTGTTACTGCGAAGCA-ACCAACCTGCTTCCTT------GGATTTTTCTTCTCTACATCCTATTCGCTTTTTGAGGCCAT--------------GAG--------------AAATAAATATCGAAAC-------G---CT-----T----A---------TA--T--GAT--GTTCATGCCGTCT----ATT--GGCAAGCGTGATATATCAAGCGTT--TATATAT-AAAATCATGGGTGTTATCATAACCTGCAAAGATTACAGTTCTCTTTATTTGCATAATCAGAAGTGATA---TTAGCACTGACCAAA--TACTTTTATCAAGCAA---C-TT-------TA-----GA----GACATACCATA-T-----ATTGCAAT---TTATAT-TTAAACTC--GTTT--TTTTTACAACTAAATGTTGCT------GTTAC
gi|5 : tatcccatgtagaactagtgtacTGTTACACTACTAAA-T-----T-TGTAT------------AT-AA-T----ATTTC--C-C-A-AT--GT-----------TACATGA-----A-T---------A-TTTATTGCTT--------TT-C-TTCCATTTCG-ACGGT--GTTT-TATCGGTACTGTTACTGCGAAGCA-ACCAACCTGCTTCCTT------GGATTTTTCTTCTCTACATCCTATTCGCTTTTTGAGGCCAT--------------GAG--------------AAATAAATATCGAAAC-------G---CT-----T----A---------TA--T--GAT--GTTCATGCCGTCT----ATT--GGCAAGCGTGATATATCAAGCGTT--TATATAT-AAAATCATGGGTGTTATCATAACCTGCAAAGATTACAGTTCTCTTTATTTGCATAATCAGAAGTGATA---TTAGCACTGACCAAA--TACTTTTATCAAGCAA---C-TT-------TA-----GA----GACATACCATA-T-----ATTGCAAT---TTATAT-TTAAACTC--GTTT--TTTTTACAACTAAATGTTGCT------GTTACagt
gi|10 : tatcccatgtagaactagtgtac---AT-GA-C----ATCTC--TACGA-AT--GGTACAATAAAGT-ATATGATC---A-TC---TTCTTG-TTAATTG-TTAA----AGTT-C-TT-------G-AT--T--AACA-TATCGGTGCGGTTACTTCGAAGCACACCGACATGCTTCCTT------CT-TTTTTT-TCGTTATATTCT-----CCTTGTGAGTCTCT--------------GAG--------------A--------------AATAAATAG---TGAAAGAC----T---------TAAAT--GAC--GTTCATGCCGTCTTTTTATTT-GGCAAGCGCGATAAATCAAGCGTTAATATATGT-AAC--CATGGGCGTTGTCATGCCTGACAAAGATTACAGTTATCTTTATTTGTAT-ATGAAAACTGATA---TTAACACTGACCAAA--TATTTTTATCAAGTA----------------------------------CTACA-T-----ATGACAAT---CTATA--TTTAAG------CTCGTTTTTGC-ACTAAATGTTGAT------GTTACagt
gi|12 : atAATTATATGATG---A-TCCTTTT---A-TTTATTG-TTGA----AGTT-C-TT-------G-GT--T--AACA-TATCGGTGCGGATACTGTGAAGCACACCGACCAACTTCCTTAAAGTTGG-TTTTTCGTCTCTACATTCTATTCCCATTGTTAGTCGCT--------------GAG--------------AAATAAATAG-----T-------GAAACG-----C----T---------TA--T--AATATGTTTATGCTGTCT----ATT--GACAATCGCGATATATCAAGCGAC--TGTATAT-GG-ATTATAGGCGTTGTCATGCCTTGCAAAAGTTAAAGATATCTTTATTTGTATAATCAAAACTGATA---TTAGCACTGACCAAA--TA-TTTTATCAGGTAA---A-TT-------AC-----GA----AACATACCACA-T-----ATGGCCGT---TTGTG--ATa
gi|7 : acaataTATATGCTGTTTA-TT---CT---A-TTTATTG-TTAT----TGTT-C-TT-------G-AT--T--GACA-TATCAGTGCGGTTACTGTGAAGCA-ACCCACCTGCTTCCTT------GC-TTTTTTGTCTCTACATTTTATTCGCTTTGTGAGGCCCT--------------GAGAAATAAATAGTGAAA--------------C-------T---C------T----TATAAAACAATA--T--GAT--ATTCATGCCGTCC----ATT--GGCAAGCGCGATATATCAAGCGTT--TATATAT-AAAATCATGGGTATTGTCATGCCTTGCAAAGATTACAGTTATCTTTATTTGCATGATCAGAATTGATA---TTAACACTGACCAAA--CA-TTTCATCAAATTA---A-TA-------AA-----GA----GACATTCCACATACACCTATGGCAAT---TGATA--AT--AATT--ATTT--TTTTA---ACTTAATGTTGATGGTACAGTTACGTG
gi|14 : aaatgacataataaagCAAGCGTA---ACATAT-AAAAGCAAGGGCGTTGTCACGACTTGCAAAGATAGCAATTAT-TTTATCTGCATAAACACAACTAATA---TAAGCACTGGCCGAA--TAGTTTTATCAAGTAA---ATTAC------AA-----GACATTGTGGTATCACA-T-----ATGACAAG---TTATA--ATACACTC--GATTTACTCTT-----T--ATGTTGAT------tatatacatacatatattcacaacatttact
gi|13 : aatattaccaaacgctaaatataggatgttcttttggaCAAGCGTA---ACATAT-AAAAGCCAGGGCGTTGTCACGACTTGCAAAGATTACAAATAT-TTTATCTGCATAAACACAACTAATA---TAAGCACTGACTGAA--TAGTTTTATCAAGTAA---ATTACATGTACAA-----GAC---ATTGTGGT----------ATTGCAATAAGTTATA--ATAAACTC--GATTTACTCTT-------AATGTTGAT------GTT
gi|15 : atttatagttgcgctaccaatgtaacgataaataggcctgtattgttttcatcaaaataggtgcaattgtttctattccttagttcatctatataacatcacaatgctttatgaggccttaagaaaaaatattaccaaacgctaaatataggatgttcttttggaCTAAATTATTTCTATCAAGTAATTTA-TA-------AAAATAGGA----GACTTACCACA-A-----ATGACAAT---TTATA--ATAAACAT--GTC---TTTTC---ACTAAGTGTTAAT------GTTAC
gi|16 : aatatgcgccatgaaatTTTATCAATTAA---A-TT-------AA-----GA----TACATGCCTTA-T-----ACGGCAAT---TTATA--ATATA--T--ATTTCTTTTAT---ACTAAATGTTGAT------GTTACAT
Alignments
lowQualScore : 1 33333 111 22222 11 11 2 33333333333333 1 222222222222222222 111111 11 222222 1 33 11111111 2222 11 1111 111111
lowQualScore : 4 3 3 1 33333 777 4 55555 77 66 8 4 4 1 0 44444444444444 2 1 222222222222222222 3 333333 3 3 6 33 555 222222 1 9 1 888888 6 0 555 3 11 3 555 555 1 77777777 6666 77 3 2 0 0 1 555 0 7 3 77777 888888 888888 555 3333 3 22 99 3333 000000
lowQualScore : . . . . ..... ... . ..... .. .. . . . . . .............. . . .................. . ...... . . . .. ... ...... . . . ...... . . ... . .. . ... ... . ........ .... .. . . . . . ... . . . ..... ...... ...... ... .... . .. .. .... ......
lowQualScore : 7 7 3 0 33333 555 2 00000 00 77 9 4 4 0 5 77777777777777 6 4 888888888888888888 3 111111 3 3 7 88 888 555555 4 2 0 888888 2 8 444 1 99 1 444 444 0 77777777 5555 33 1 9 2 4 0 444 2 0 1 77777 888888 888888 444 5555 1 88 22 9999 555555
consensus : NNNNNNNNNAGTGTAACATCAACATTTAGTAAAAANANAATTT-TATTATAAATTGCCGTATGTGGCATGTCTCTTA-----AT---TTATTTGATA-----AAAATACAATGTTACA--A-TAAA-TTTG-TATA-TGACATCTCTAC-A-A-T---GGNACAATAAAGTTATATGATG---A-TC---TT---A-TTTATTGTTAA----AGTT-C-TTG-ATT--AA---CA------TATCGGTGCGGTTACTGCGAAGCACACCGACCTGCTTCCTT------GG-TTTTTCGTCTCTA---CATT-CTATTCGCTTTGTGAGGCCCTGAGAAATAAATAGT-G-A---AACGCT---TATA--------TGATGTTCATGCCGTCT----ATT--GG-CAAGCGCGATATATCAAGCGTTTATATAT-AAAATCATGGGCGTTGTCATGACTTGCAAAGATTACAGTTATCTTTATTTGCATAATCAGAANTGATA---TTAGCACTGACCAAATANTTTTATCAAGTAAATTA-A-----GAGACA------TACCACA------TATGGCAAT---TTATAT-A-T-AAACTCG-TTT--TTTTT---ACTAAATGTTGAT------GTTACGTG
Reference ( family-2965 ) : NNNNNNNNNAGTGTAACATCAACATTTAGTAAAAAAACAATTT-TATTATAAATTGCCATATGTGGTATGTCTCTTA-----AT---TTACTTGATA-----AAAATACAGTGTTACA--A-TAAA-TTTG-TNTAATGACATCTCTAC-A-A-T---GNAACAATAAAGTTATATGATG---A-TC---TT---A-TTTATTGTTAA----AGTT-C-TTG-ATT--AA---CA------TATCGGTGCGGTTACTGCGAAGCACACCNACCTGCTTCCTT------GG-TTTTTCGTCTCTA---CATT-CTATTCGCTTTGTGAGGCCCTGAGAAATAAATAG--G-A---AACGCT---TNTA--------TGATGTTCATGCCGTCT----ATT--GG-CAAGCGCGATATATCAAGCGTTTATATAT-AAAATCATGGGCGTTGTCATGACTTGCAAAGATTACAGTTATCTTTATTTGCATAATCAGAANTGATA---TTAGCACTGACCAAATANTTTTATCAAGTAAATTA-A-----GAGACA------TACCACA------TATGGCAAT---TTATA--A-T-AAACTCG-TTT--TTTTT---ACTAAATGTTGAT------GTTACGTG
gi|1 : CAGTGTAACA--A-TAAAGTTTG-TGT-----TATCTCCATTA-A-T---GAAACA-TGAAGATTTATGGTA---ACTC---TT------TCATT-TTAACGATAATTACATCG-ATTTCAT---CGG-----TATCAGTGCGGTAACTGTGAAACACACCGGCCTA-----TC------GG-CTGTTCGTCCCTA---CACT-ATATTCGCTTTGTGAGGTCATGAGAAATAAATTG--ACA---AACGCT---TATA--------TGACGTGCACGCCGTCT----ATTTTGG-CAAGTGCGTTTTACCAAGCGTTTATATAT-AAAACCATCGGCGCTGTCATGACTTGCAAAGATTACAGTTATCTTTATATGCATAATTAGGACGAATA---TCAGCACTGACCAAATAGTTTCATCAAGTAAATAA-A-----GAGACA------TGCCACA------TATGGCAAT---TTATA--A-T-AAACTCG---G--TTTTC---ACTCAATGTTGAT------GTTAC
gi|10 : gtcacgactgctttgcatattataatttctgctatactatttactgatttctggacttcagcaacactaaagttttacatcgaatatttatcttcatATGACATCTCTACGA-A-T---GGTACAATAAAGT-ATATGATC---A-TC---TTCTTG-TTAATTGTTAA----AGTT-C-TTG-ATT--AA---CA------TATCGGTGCGGTTACTTCGAAGCACACCGACATGCTTCCTT------CT-TTTTTT-TCGTTA---TATT-CT-----CCTTGTGAGTCTCTGAGAAATAAATAGT-G-A---AAGACT---TAAA--------TGACGTTCATGCCGTCTTTTTATTT-GG-CAAGCGCGATAAATCAAGCGTTAATATAT-GTAACCATGGGCGTTGTCATGCCTGACAAAGATTACAGTTATCTTTATTTGTAT-ATGAAAACTGATA---TTAACACTGACCAAATATTTTTATCAAG--------------------------TACTACA------TATGACAAT---CTATAT-T-T-AAGCTCG--TT--TTTGC---ACTAAATGTTGAT------GTTACa
gi|11 : atAATGTTACA--A-TACA-TT----ATA-TGATATCTCTACGA-A-T---GGTACAATAAAGT-ATATGTTG---T-TT---TT---A-CTTATTGTTAA----AGTT-C-TTG-ATC--AA---CA------TATCGATGCAGTGACTGTGAAGCA-ACCCACCTGCTTCCTT------GG-GGTTTCGTCTCTA---CGTT-CTGTTCGCTTTGTGAGGCCCTGAGAAATAAATAGT-G-A---AACGCT---TATA--------TGATGTTTATGCCGTCT----ACT--GG-CAAGCGCGATACATCACGCGTTTATATAT-AAAATCATAAGCATTATCATGa
gi|12 : acgttttacgctttctgttgtgctaaacatcaacatgtttgctaagtatgatatacttttccataatacataggcgtgatttacaacatcggtcaACAATAAA-TTATATGATG---A-TCCTTTT---A-TTTATTGTTGA----AGTT-C-TTG-GTT--AA---CA------TATCGGTGCGGATACTGTGAAGCACACCGACCAACTTCCTTAAAGTTGG-TTTTTCGTCTCTA---CATT-CTATTCCCATTGTTAGTCGCTGAGAAATAAATAGT-G-A---AACGCT---TATA--------ATATGTTTATGCTGTCT----ATT--GA-CAATCGCGATATATCAAGCGACTGTATAT-GGA-TTATAGGCGTTGTCATGCCTTGCAAAAGTTAAAGATATCTTTATTTGTATAATCAAAACTGATA---TTAGCACTGACCAAATA-TTTTATCAGGTAAATTA-C-----GAAACA------TACCACA------TATGGCCGT---TTGTG--A-T-
gi|13 : TTCCTT------AG-TT---CATCTATATAACATCACAAT--GCTTTATGAGGCCTTAAGAAA-AAATAT--T-ACCAAACGCTAAATATA--------GGATGTTCTT------------TT--GGACAAGCG-----TA----------ACATAT-AAAAGCCAGGGCGTTGTCACGACTTGCAAAGATTACAAATAT-TTTATCTGCATAAACACAACTAATA---TAAGCACTGACTGAATAGTTTTATCAAGTAAATTACATGTACAAGACA------TTGTG-G------TATTGCAATAAGTTATA--A-T-AAACTCG-ATT--TACT-----CTTAATGTTGAT------GTT
gi|14 : atttatagttgcgctaccaatgtaacgataaataggcctgtattgttttcatcaaaataggtgcaattgtttctaCAAGCGTA-ACATAT-AAAAGCAAGGGCGTTGTCACGACTTGCAAAGATAGCAATTAT-TTTATCTGCATAAACACAACTAATA---TAAGCACTGGCCGAATAGTTTTATCAAGTAAATTA-C-----AAGACATTGTGGTATCACA------TATGACAAG---TTATA--A-T-ACACTCGATTTACTCTTT--------ATGTTGAT------
gi|15 : aatattaccaaacgctaaatataggatgttcttttggaGTAACATTAACACTTAGTGAAAAGACATGTT-TATTATAAATTGTCATTTGTGGTAAGTCTCCTATTTTTATAAATTACTTGATA-----GAAATA
gi|16 : aatatgcgccatgaaatctaaatAATGTAACATCAACATTTAGTATAAAAGAAATATATATTATAAATTGCCGTATAAGGCATGTATCTTA-----AT---TTAATTGATA-----AA
gi|2 : tgAGTGTTACATCAACATTTAGTAAAAATATAATTT-TATTATAAATTGCCATATGTGGCATGTCTCTTA-----AT---TTATTTGCTA-----AAAATACAATGTTACA--A-TAAA-TTTGTTTTAATAGCATCTTT-C-A-A-T---GTAAGACTATAGTTATATGATG---A-TC---TT---A-TTTATTGTTAA----AATT-C-TTG-ACT--AA---CA------TATCGGTGCGGTTATTGTTAGGCACACTGACCTGCTTCCTT------GG-TTTTTCGTCTCTA---CATT-CTATTCGCGTTGTGAGGCCCTGAG-------------------ACGCG---TTTA--------TGATGTTTATGCCGTCT----ATT--GG-CAAGCGCGATATATCAAGCGTTTATATAT-AACATTATGGGCGTTGTCCCGACTTACAAAGATAACAGTTATCTTTATTTGCATAATCAGATCTGATA---TAAGCACTGCCCTAACATTTTTATCAAGTAAATAA-A-----GAGTCG------TGCCACA------AATGGCAAT---TTATA--A-T-AAAATTG-TTTTGTTTTT---ACTAAATGTTGAT------GTTACGTG
gi|3 : tcgaattaaATAC--TGTTACA--A-TATA-ATTA-TATA-TGACATCTCC-C-A-A-T---ATAACAATATAATTAT-----------------T---A-TTTATTGT-AA----AGTT-T-TTA-ATT--AA---CA------TATCGGGGCCGTTACTGAGAAGTA-ACCCACTTGCTTCCTT------G--CTTTTCTTCTCTA---CATT-TTATTTGCTTTGTGAGGCCCTGAGAAATAAATAGTTG-A---A-CGTT---TATA--------GGATGTTCATGTCGTAT----ATT--GG-CAAGCGCGATAAATCAAGCGTTTATATATGAAAATCATGGGCGTCATCATGACTTGCAAAGATTACAGTTCTCTTTATTTGCATAATCAGAAGTGATA---TTAGCGCTGACCAAATATTTTTATCAAGTGAATTT-A-----GAGACA------TACCACA------AATGGCAAT---TTATAT-T-T-AAACTCG-TTT--TTTTT---ACTAAATTTTGCT------GTTAC
gi|4 : atcaattttcattgtatggcgattcatggttttatgttatggtgcatatcatatgttagcatgtgtttT---TTATTCGATATCCGTAAAATAC-----TATAT-A-TAAA-T--G-TATATTGTT-TCACT-C-A-G-TTCTGTAACAATAAATTTATATGATG---T-TC---TT---A-TTTATTGTTTA----AGTT-C-TTG-ATT--AA---TA------TATCGGTGCGGTTACTATGAAGCACACCGACGTGCTTCCTT------GG-TTTTACGTCTCTA---CATT-CTATTCACTTTGTGAGACCCTAAGAAATAAACGGT-G-A---AACGCT---TATA--------TGATGTTCATGCCGTCT----TTT--GG-CAAGCGTGATATATCAGGCGTTTATATAT-AAAATCATGGGCGCTGTCATGCCTTGCAAAGATTACAGTTATCTTTATTTGCATAATCAGAAATGATATTTTTAGCACTGACCAAATAA-TTTATCAAGTAAATTA-A-----GAGATA------TACCATA------TATGACACT---TT-TG--ATT-AAACTCG--GT--TTTGC---ACTAAATGTT
gi|5 : gaatgagatgttTGTTACACTACTAAA-TTTG-TATA-TAATATTTCC---------------CAAT---GTTACATGA-----A-T---------A-TTTATTGCT-------TTT-C-TTCCATTTCGA---CGGTGTTTTATCGGTACTGTTACTGCGAAGCA-ACCAACCTGCTTCCTT------GGATTTTTCTTCTCTA---CATC-CTATTCGCTTTTTGAGGCCATGAGAAATAAATATC-G-A---AACGCT---TATA--------TGATGTTCATGCCGTCT----ATT--GG-CAAGCGTGATATATCAAGCGTTTATATAT-AAAATCATGGGTGTTATCATAACCTGCAAAGATTACAGTTCTCTTTATTTGCATAATCAGAAGTGATA---TTAGCACTGACCAAATACTTTTATCAAGCAACTTT-A-----GAGACA------TACCATA------TATTGCAAT---TTATAT-T-T-AAACTCG-TTT--TTTTTACAACTAAATGTTGCT------GTTACagtagtatatat
gi|6 : tatcccatgtagaactagtgtacTGTTACACTACTAAA-TTTG-TATA-TAATATTTCC---------------CAAT---GTTACATGA-----A-T---------A-TTTATTGCT-------TTT-C-TTCCATTTCGA---CGGTGTTTTATCGGTACTGTTACTGCGAAGCA-ACCAACCTGCTTCCTT------GGATTTTTCTTCTCTA---CATC-CTATTCGCTTTTTGAGGCCATGAGAAATAAATATC-G-A---AACGCT---TATA--------TGATGTTCATGCCGTCT----ATT--GG-CAAGCGTGATATATCAAGCGTTTATATAT-AAAATCATGGGTGTTATCATAACCTGCAAAGATTACAGTTCTCTTTATTTGCATAATCAGAAGTGATA---TTAGCACTGACCAAATACTTTTATCAAGCAACTTT-A-----GAGACA------TACCATA------TATTGCAAT---TTATAT-T-T-AAACTCG-TTT--TTTTTACAACTAAATGTTGCT------GTTACagt
gi|7 : tatcccatgtagaactagtgtac-A-A-T---GACATAATAAAGT-ATATGCTGTTTA-TT---CT---A-TTTATTGTTAT----TGTT-C-TTG-ATT--GA---CA------TATCAGTGCGGTTACTGTGAAGCA-ACCCACCTGCTTCCTT------GC-TTTTTTGTCTCTA---CATT-TTATTCGCTTTGTGAGGCCCTGAGAAATAAATAGT-G-A---AACTCT---TATAAAACAATATGATATTCATGCCGTCC----ATT--GG-CAAGCGCGATATATCAAGCGTTTATATAT-AAAATCATGGGTATTGTCATGCCTTGCAAAGATTACAGTTATCTTTATTTGCATGATCAGAATTGATA---TTAACACTGACCAAACA-TTTCATCAAATTAATAA-A-----GAGACA------TTCCACATACACCTATGGCAAT---TGATA--A-T-AA--TTA-TTT--TTTTA---ACTTAATGTTGATGGTACAGTTACGTGagt
gi|8 : aTGTTACA--A-CAGA-TTTG-TATGA-GACATCTCTAC-GGA-T---GGTACAATAAAGT-ATGTGTTG---T-TC---TTCTTA-TTTATTGTTA------TTT-C-TT---TT--AATCACA------TATCGGTGCGGTTAGTGTGAAGCA-ACCCACCTGCTTCCTT------TG-GTTTTCGACTTTA---CATT-TTCTTTGCTTTGTGAGGCCCTGAGAAATAAATAGT-G-A---AACGCT---TATA--------TGATGTTCATGCCGTTT----ATT--GG-CAAGCGCGATACAACAAGGGTTTATATAT-AAAATCATTGGCTTTATTA----------AGATTACAGTTCTCTTTATTTGCATAATCAGAAGTGATA---TAAGCACTGATTAAATAGTTTTATCAAGTAGATTA-A-----GAGACA------TAACACA------AATGGCAAT---TTATA--CTT-AAATTCG--TT--TTTTC---ATTAAATATTGAT------GTAACtatatacatacatatattcacaacatttact
gi|9 : taTGTAACA--A-TAAC-TTTA-TATG-TGACATCTCTAC-G-GCT---GGTACAATTAAGT-A-ATGATGTT-A-TT---TT---AATTTATTGTTTA----AGTT-C-TTG-ATT--AA---AC------TATTTGTGCGGTTACTGCGAAGCA-ACCCACCTGCTTCTTT------GG-TTTTTCGTCGTTA---CATT-CTTTTCGTTTTGTGAGGCCCTTAAAAATAAATAGT-G-A---AACGCT---TATAATTA----TGATGTTCATGCCGTCT----ATT--GG-CAAGCACGATACATCAAGCGTTTATATAT-AAAATCATTGGAGTTATCATGACTTGTAAATATTACAGTTTTCTTTATTTGCATAATCAGAAGTGACA---TTAGCACTGACCAAATATTTTTATTAAGTAAATTA-A-----GAGACA------TGCCACA------TATGGCAAT---TTATATGA-TAAAAAT---TTT--TTTTT---AATAAATGTTGAT------GTTaccagtacgcattaaaacttatatga
Alignments
lowQualScore : 1 33333 111 22222 11 33333333333333 1 222222222222222222 111111 11 222222 1 11111111 222 11 1111 111111
lowQualScore : 1 1 3 0 33333 777 1 55555 6 2 22 8 4 55 22222222222222 2 1 222222222222222222 3 333333 3 3 6 33 555 222222 1 9 3 888888 6 0 555 3 44 555 77777777 6666 77 3 2 0 0 1 555 0 7 3 77777 888888 888888 555 111 3 22 99 3333 000000
lowQualScore : . . . . ..... ... . ..... . . .. . . .. .............. . . .................. . ...... . . . .. ... ...... . . . ...... . . ... . .. ... ........ .... .. . . . . . ... . . . ..... ...... ...... ... ... . .. .. .... ......
lowQualScore : 0 0 3 7 33333 555 2 00000 0 2 22 9 4 55 00000000000000 6 4 888888888888888888 3 111111 3 3 7 88 888 555555 4 2 1 888888 2 8 444 1 22 444 77777777 5555 33 1 9 2 4 0 444 2 0 1 77777 888888 888888 444 999 3 88 22 9999 555555
consensus : NNNNNNNNNAGTGTAACATCAACATTTAGTAAAAANANAATTT-TATTATAAATTGCCGTATGTGGCATGTCTCTTA-----AT---TTATTTGATA-----AAAATACAATGTTACA--A-TAAA-TTTGTAT--ATGACATCTCTAC-A-A-T---GGNACAATAAAGTTATATGATG---A-TC---TT---A-TTTATTGTTAA----AGTT-C-TTG-ATT--AA---CA------TATCGGTGCGGTTACTGCGAAGCACACCGACCTGCTTCCTT------GG-TTTTTCGTCTCTA---CATT-CTATTCGCTTTGTGAGGCCCTGAGAAATAAATAGTG--AAACGCT---TATA--------TGATGTTCATGCCGTCT----ATT--GG-CAAGCGCGATATATCAAGCGTTTATATAT-AAAATCATGGGCGTTGTCATGACTTGCAAAGATTACAGTTATCTTTATTTGCATAATCAGAANTGATA---TTAGCACTGACCAAATANTTTTATCAAGTAAATTA-A-----GAGACA------TACCACA------TATGGCAAT---TTATAT-NT-AAACTCG-TTT--TTTTT---ACTAAATGTTGAT------GTTACGTG
Reference ( family-2965 ) : NNNNNNNNNAGTGTAACATCAACATTTAGTAAAAANANAATTT-TATTATAAATTGCCGTATGTGGCATGTCTCTTA-----AT---TTATTTGATA-----AAAATACAATGTTACA--A-TAAA-TTTGTAT--ATGACATCTCTAC-A-A-T---GGNACAATAAAGTTATATGATG---A-TC---TT---A-TTTATTGTTAA----AGTT-C-TTG-ATT--AA---CA------TATCGGTGCGGTTACTGCGAAGCACACCGACCTGCTTCCTT------GG-TTTTTCGTCTCTA---CATT-CTATTCGCTTTGTGAGGCCCTGAGAAATAAATAGTG--AAACGCT---TATA--------TGATGTTCATGCCGTCT----ATT--GG-CAAGCGCGATATATCAAGCGTTTATATAT-AAAATCATGGGCGTTGTCATGACTTGCAAAGATTACAGTTATCTTTATTTGCATAATCAGAANTGATA---TTAGCACTGACCAAATANTTTTATCAAGTAAATTA-A-----GAGACA------TACCACA------TATGGCAAT---TTATAT-AT-AAACTCG-TTT--TTTTT---ACTAAATGTTGAT------GTTACGTG
gi|1 : CAGTGTAACA--A-TAAAGTTTGTGT------TATCTCCATTA-A-T---GAAACA-TGAAGATTTATGGTA---ACTC---TT------TCATT-TTAACGATAATTACATCG-ATTTCAT---CGG-----TATCAGTGCGGTAACTGTGAAACACACCGGCCTA-----TC------GG-CTGTTCGTCCCTA---CACT-ATATTCGCTTTGTGAGGTCATGAGAAATAAATTGAC--AAACGCT---TATA--------TGACGTGCACGCCGTCT----ATTTTGG-CAAGTGCGTTTTACCAAGCGTTTATATAT-AAAACCATCGGCGCTGTCATGACTTGCAAAGATTACAGTTATCTTTATATGCATAATTAGGACGAATA---TCAGCACTGACCAAATAGTTTCATCAAGTAAATAA-A-----GAGACA------TGCCACA------TATGGCAAT---TTATA--AT-AAACTCG---G--TTTTC---ACTCAATGTTGAT------GTTAC
gi|10 : gtcacgactgctttgcatattataatttctgctatactatttactgatttctggacttcagcaacactaaagttttacatcgaatatttatcttcatAT--ATGACATCTCTACGA-A-T---GGTACAATAAAGT-ATATGATC---A-TC---TTCTTG-TTAATTGTTAA----AGTT-C-TTG-ATT--AA---CA------TATCGGTGCGGTTACTTCGAAGCACACCGACATGCTTCCTT------CT-TTTTTT-TCGTTA---TATT-CT-----CCTTGTGAGTCTCTGAGAAATAAATAGTG--AAAGACT---TAAA--------TGACGTTCATGCCGTCTTTTTATTT-GG-CAAGCGCGATAAATCAAGCGTTAATATAT-GTAACCATGGGCGTTGTCATGCCTGACAAAGATTACAGTTATCTTTATTTGTAT-ATGAAAACTGATA---TTAACACTGACCAAATATTTTTATCAAG--------------------------TACTACA------TATGACAAT---CTATAT-TT-AAGCTCG--TT--TTTGC---ACTAAATGTTGAT------GTTACa
gi|11 : AATGTTACA--A-TACA-TT---AT--ATGATATCTCTACGA-A-T---GGTACAATAAAGT-ATATGTTG---T-TT---TT---A-CTTATTGTTAA----AGTT-C-TTG-ATC--AA---CA------TATCGATGCAGTGACTGTGAAGCA-ACCCACCTGCTTCCTT------GG-GGTTTCGTCTCTA---CGTT-CTGTTCGCTTTGTGAGGCCCTGAGAAATAAATAGTG--AAACGCT---TATA--------TGATGTTTATGCCGTCT----ACT--GG-CAAGCGCGATACATCACGCGTTTATATAT-AAAATCATAAGCATTATCATGa
gi|12 : acgttttacgctttctgttgtgctaaacatcaacatgtttgctaagtatgatatacttttccataatacataggcgtgatttacaacatcggtcaACAATAAA-TTATATGATG---A-TCCTTTT---A-TTTATTGTTGA----AGTT-C-TTG-GTT--AA---CA------TATCGGTGCGGATACTGTGAAGCACACCGACCAACTTCCTTAAAGTTGG-TTTTTCGTCTCTA---CATT-CTATTCCCATTGTTAGTCGCTGAGAAATAAATAGTG--AAACGCT---TATA--------ATATGTTTATGCTGTCT----ATT--GA-CAATCGCGATATATCAAGCGACTGTATAT--GGATTATAGGCGTTGTCATGCCTTGCAAAAGTTAAAGATATCTTTATTTGTATAATCAAAACTGATA---TTAGCACTGACCAAATA-TTTTATCAGGTAAATTA-C-----GAAACA------TACCACA------TATGGCCGT---TTGT
gi|13 : TTCCTT------AG-TT---CATCTATATAACATCACAAT--GCTTTATGAGGCCTTAAGAAA-AAATATTACCAAACGCTAAATATA--------GGATGTTCTT------------TT--GGACAAGCG-----TA----------ACATAT-AAAAGCCAGGGCGTTGTCACGACTTGCAAAGATTACAAATAT-TTTATCTGCATAAACACAACTAATA---TAAGCACTGACTGAATAGTTTTATCAAGTAAATTACATGTACAAGACA------TTGTG-G------TATTGCAATAAGTTATA--AT-AAACTCG-ATT--TACT-----CTTAATGTTGAT------GTTgat
gi|14 : atttatagttgcgctaccaatgtaacgataaataggcctgtattgttttcatcaaaataggtgcaattgtttctaCAAGCGTA-ACATAT-AAAAGCAAGGGCGTTGTCACGACTTGCAAAGATAGCAATTAT-TTTATCTGCATAAACACAACTAATA---TAAGCACTGGCCGAATAGTTTTATCAAGTAAATTA-C-----AAGACATTGTGGTATCACA------TATGACAAG---TTATA--AT-ACACTCGATTTACTCTTT--------ATGTTGAT------
gi|15 : aatattaccaaacgctaaatataggatgttcttttggaGTAACATTAACACTTAGTGAAAAGACATGTT-TATTATAAATTGTCATTTGTGGTAAGTCTCCTATTTTTATAAATTACTTGATA-----GAAATA
gi|16 : aatatgcgccatgaaatctaaatAATGTAACATCAACATTTAGTATAAAAGAAATATATATTATAAATTGCCGTATAAGGCATGTATCTTA-----AT---TTAATTGATA-----AA
gi|2 : tgAGTGTTACATCAACATTTAGTAAAAATATAATTT-TATTATAAATTGCCATATGTGGCATGTCTCTTA-----AT---TTATTTGCTA-----AAAATACAATGTTACA--A-TAAA-TTTGTTTTAATAGCATCTTT-C-A-A-T---GTAAGACTATAGTTATATGATG---A-TC---TT---A-TTTATTGTTAA----AATT-C-TTG-ACT--AA---CA------TATCGGTGCGGTTATTGTTAGGCACACTGACCTGCTTCCTT------GG-TTTTTCGTCTCTA---CATT-CTATTCGCGTTGTGAGGCCCTGAG----------------ACGCG---TTTA--------TGATGTTTATGCCGTCT----ATT--GG-CAAGCGCGATATATCAAGCGTTTATATAT-AACATTATGGGCGTTGTCCCGACTTACAAAGATAACAGTTATCTTTATTTGCATAATCAGATCTGATA---TAAGCACTGCCCTAACATTTTTATCAAGTAAATAA-A-----GAGTCG------TGCCACA------AATGGCAAT---TTATA--AT-AAAATTG-TTTTGTTTTT---ACTAAATGTTGAT------GTTACGTG
gi|3 : tcgaattaaATAC--TGTTACA--A-TATA-ATTATAT--ATGACATCTCC-C-A-A-T---ATAACAATATAATTAT-----------------T---A-TTTATTGT-AA----AGTT-T-TTA-ATT--AA---CA------TATCGGGGCCGTTACTGAGAAGTA-ACCCACTTGCTTCCTT------G--CTTTTCTTCTCTA---CATT-TTATTTGCTTTGTGAGGCCCTGAGAAATAAATAGTT--GAACGTT---TATA--------GGATGTTCATGTCGTAT----ATT--GG-CAAGCGCGATAAATCAAGCGTTTATATATGAAAATCATGGGCGTCATCATGACTTGCAAAGATTACAGTTCTCTTTATTTGCATAATCAGAAGTGATA---TTAGCGCTGACCAAATATTTTTATCAAGTGAATTT-A-----GAGACA------TACCACA------AATGGCAAT---TTATAT-TT-AAACTCG-TTT--TTTTT---ACTAAATTTTGCT------GTTAC
gi|4 : atcaattttcattgtatggcgattcatggttttatgttatggtgcatatcatatgttagcatgtgtttT---TTATTCGATATCCGTAAAATACTATAT------A-TAAA-T--GTAT--ATTGTTTCACT-C-A-G-TTCTGTAACAATAAATTTATATGATG---T-TC---TT---A-TTTATTGTTTA----AGTT-C-TTG-ATT--AA---TA------TATCGGTGCGGTTACTATGAAGCACACCGACGTGCTTCCTT------GG-TTTTACGTCTCTA---CATT-CTATTCACTTTGTGAGACCCTAAGAAATAAACGGTG--AAACGCT---TATA--------TGATGTTCATGCCGTCT----TTT--GG-CAAGCGTGATATATCAGGCGTTTATATAT-AAAATCATGGGCGCTGTCATGCCTTGCAAAGATTACAGTTATCTTTATTTGCATAATCAGAAATGATATTTTTAGCACTGACCAAATAA-TTTATCAAGTAAATTA-A-----GAGATA------TACCATA------TATGACACT---TTTGAT--T-AAACTCG--GT--TTTGC---ACTAAATGTT
gi|5 : gaatgagatgttTGTTACACTACTAAA-TTTGTAT--ATAATATTTCC---------------CAAT---GTTACATGA-----A-T---------A-TTTATTGCT-------TTT-C-TTCCATTTCGA---CGGTGTTTTATCGGTACTGTTACTGCGAAGCA-ACCAACCTGCTTCCTT------GGATTTTTCTTCTCTA---CATC-CTATTCGCTTTTTGAGGCCATGAGAAATAAATATCG--AAACGCT---TATA--------TGATGTTCATGCCGTCT----ATT--GG-CAAGCGTGATATATCAAGCGTTTATATAT-AAAATCATGGGTGTTATCATAACCTGCAAAGATTACAGTTCTCTTTATTTGCATAATCAGAAGTGATA---TTAGCACTGACCAAATACTTTTATCAAGCAACTTT-A-----GAGACA------TACCATA------TATTGCAAT---TTATAT-TT-AAACTCG-TTT--TTTTTACAACTAAATGTTGCT------GTTACagtagtatatat
gi|6 : tatcccatgtagaactagtgtacTGTTACACTACTAAA-TTTGTAT--ATAATATTTCC---------------CAAT---GTTACATGA-----A-T---------A-TTTATTGCT-------TTT-C-TTCCATTTCGA---CGGTGTTTTATCGGTACTGTTACTGCGAAGCA-ACCAACCTGCTTCCTT------GGATTTTTCTTCTCTA---CATC-CTATTCGCTTTTTGAGGCCATGAGAAATAAATATCG--AAACGCT---TATA--------TGATGTTCATGCCGTCT----ATT--GG-CAAGCGTGATATATCAAGCGTTTATATAT-AAAATCATGGGTGTTATCATAACCTGCAAAGATTACAGTTCTCTTTATTTGCATAATCAGAAGTGATA---TTAGCACTGACCAAATACTTTTATCAAGCAACTTT-A-----GAGACA------TACCATA------TATTGCAAT---TTATAT-TT-AAACTCG-TTT--TTTTTACAACTAAATGTTGCT------GTTACagt
gi|7 : tatcccatgtagaactagtgtac-A-A-T---GACATAATAAAGT-ATATGCTGTTTA-TT---CT---A-TTTATTGTTAT----TGTT-C-TTG-ATT--GA---CA------TATCAGTGCGGTTACTGTGAAGCA-ACCCACCTGCTTCCTT------GC-TTTTTTGTCTCTA---CATT-TTATTCGCTTTGTGAGGCCCTGAGAAATAAATAGTG--AAACTCT---TATAAAACAATATGATATTCATGCCGTCC----ATT--GG-CAAGCGCGATATATCAAGCGTTTATATAT-AAAATCATGGGTATTGTCATGCCTTGCAAAGATTACAGTTATCTTTATTTGCATGATCAGAATTGATA---TTAACACTGACCAAACA-TTTCATCAAATTAATAA-A-----GAGACA------TTCCACATACACCTATGGCAAT---TGATA--AT-AA--TTA-TTT--TTTTA---ACTTAATGTTGATGGTACAGTTACGTGagt
gi|8 : aATGTTACA--A-CAGA-TTTGTAT--GAGACATCTCTAC-GGA-T---GGTACAATAAAGT-ATGTGTTG---T-TC---TTCTTA-TTTATTGTTA------TTT-C-TT---TT--AATCACA------TATCGGTGCGGTTAGTGTGAAGCA-ACCCACCTGCTTCCTT------TG-GTTTTCGACTTTA---CATT-TTCTTTGCTTTGTGAGGCCCTGAGAAATAAATAGTG--AAACGCT---TATA--------TGATGTTCATGCCGTTT----ATT--GG-CAAGCGCGATACAACAAGGGTTTATATAT-AAAATCATTGGCTTTATT----------AAGATTACAGTTCTCTTTATTTGCATAATCAGAAGTGATA---TAAGCACTGATTAAATAGTTTTATCAAGTAGATTA-A-----GAGACA------TAACACA------AATGGCAAT---TTATAC-TT-AAATTCG--TT--TTTTC---ATTAAATATTGAT------GTAACtatatacatacatatattcacaacatttact
gi|9 : tTGTAACA--A-TAAC-TTTATAT--GTGACATCTCTAC-G-GCT---GGTACAATTAAGT-A-ATGATGTT-A-TT---TT---AATTTATTGTTTA----AGTT-C-TTG-ATT--AA---AC------TATTTGTGCGGTTACTGCGAAGCA-ACCCACCTGCTTCTTT------GG-TTTTTCGTCGTTA---CATT-CTTTTCGTTTTGTGAGGCCCTTAAAAATAAATAGTG--AAACGCT---TATAATTA----TGATGTTCATGCCGTCT----ATT--GG-CAAGCACGATACATCAAGCGTTTATATAT-AAAATCATTGGAGTTATCATGACTTGTAAATATTACAGTTTTCTTTATTTGCATAATCAGAAGTGACA---TTAGCACTGACCAAATATTTTTATTAAGTAAATTA-A-----GAGACA------TGCCACA------TATGGCAAT---TTATATGATAAAAAT---TTT--TTTTT---AATAAATGTTGAT------GTTaccagtacgcattaaaacttatatga
Alignments
lowQualScore : 1 33333 111 22222 11 333333333333333 1 222222222222222222 111111 2222222222222222 1 11111111 222 11 1111 111111
lowQualScore : 1 1 3 0 33333 777 1 55555 6 2 22 8 4 55 222222222222222 2 1 666666666666666666 3 333333 3 3 6 0000000000000000 1 9 3 888888 6 0 555 3 44 555 77777777 6666 44 3 3 2 0 0 1 555 0 7 3 77777 888888 888888 555 000 3 22 99 3333 000000
lowQualScore : . . . . ..... ... . ..... . . .. . . .. ............... . . .................. . ...... . . . ................ . . . ...... . . ... . .. ... ........ .... .. . . . . . . ... . . . ..... ...... ...... ... ... . .. .. .... ......
lowQualScore : 0 0 3 7 33333 555 2 00000 0 2 22 9 4 55 444444444444444 6 4 999999999999999999 3 111111 3 3 7 2222222222222222 4 2 1 888888 2 8 444 1 22 444 77777777 5555 22 1 1 9 2 4 0 444 2 0 1 77777 888888 888888 444 222 3 88 22 9999 555555
consensus : NNNNNNNNNAGTGTAACATCAACATTTAGTAAAAANANAATTT-TATTATAAATTGCCGTATGTGGCATGTCTCTTA-----AT---TTATTTGATA-----AAAATACAATGTTACA--A-TAAA-TTTGTAT--ATGACATCTCTA-C-A-A-T---GGNACAATAAAGTTATATGATG---A-TC---TT---A-TTTATTGTTAA----AGTT-C-TTG-ATT--AA---C-A------TATCGGTGCGGTTACTGCGAAGCACACCGACCTGCTTCCTT------GG-TTTTTCGTCTCTA---CATT-CTATTCGCTTTGTGAGGCCCTGAGAAATAAATAGTG--AAACGCT---TATA--------TGATGTTCATGCCGTCT----A--TT-GG-CAAGCGCGATATATCAAGCGTTTATATAT-AAAATCATGGGCGTTGTCATGACTTGCAAAGATTACAGTTATCTTTATTTGCATAATCAGAANTGATA---TTAGCACTGACCAAATANTTTTATCAAGTAAATTA-A-----GAGACA------TACCACA------TATGGCAAT---TTATAT-NT-AAACTCG-TTT--TTTTT---ACTAAATGTTGAT------GTTACGTG
Reference ( family-2965 ) : NNNNNNNNNAGTGTAACATCAACATTTAGTAAAAANANAATTT-TATTATAAATTGCCGTATGTGGCATGTCTCTTA-----AT---TTATTTGATA-----AAAATACAATGTTACA--A-TAAA-TTTGTAT--ATGACATCTCTA-C-A-A-T---GGNACAATAAAGTTATATGATG---A-TC---TT---A-TTTATTGTTAA----AGTT-C-TTG-ATT--AA---C-A------TATCGGTGCGGTTACTGCGAAGCACACCGACCTGCTTCCTT------GG-TTTTTCGTCTCTA---CATT-CTATTCGCTTTGTGAGGCCCTGAGAAATAAATAGTG--AAACGCT---TATA--------TGATGTTCATGCCGTCT----A--TT-GG-CAAGCGCGATATATCAAGCGTTTATATAT-AAAATCATGGGCGTTGTCATGACTTGCAAAGATTACAGTTATCTTTATTTGCATAATCAGAANTGATA---TTAGCACTGACCAAATANTTTTATCAAGTAAATTA-A-----GAGACA------TACCACA------TATGGCAAT---TTATAT-NT-AAACTCG-TTT--TTTTT---ACTAAATGTTGAT------GTTACGTG
gi|1 : CAGTGTAACA--A-TAAAGTTTGTGT------TATCTCCATT-A-A-T---GAAAC-ATGAAGATTTATGGTA---ACTC---T------TTCATT-TTAACGATAATTACATCG-ATTTCAT---CGG------TATCAGTGCGGTAACTGTGAAACACACCGGCCTA-----TC------GG-CTGTTCGTCCCTA---CACT-ATATTCGCTTTGTGAGGTCATGAGAAATAAATTGAC--AAACGCT---TATA--------TGACGTGCACGCCGTCT----ATTTT-GG-CAAGTGCGTTTTACCAAGCGTTTATATAT-AAAACCATCGGCGCTGTCATGACTTGCAAAGATTACAGTTATCTTTATATGCATAATTAGGACGAATA---TCAGCACTGACCAAATAGTTTCATCAAGTAAATAA-A-----GAGACA------TGCCACA------TATGGCAAT---TTATA--AT-AAACTCG---G--TTTTC---ACTCAATGTTGAT------GTTAC
gi|10 : gtcacgactgctttgcatattataatttctgctatactatttactgatttctggacttcagcaacactaaagttttacatcgaatatttatcttcatAT--ATGACATCTCTA-CGA-A-T---GGTACAATAAAGT-ATATGATC---A-TC---TTCTTG-TTAATTGTTAA----AGTT-C-TTG-ATT--AA---C-A------TATCGGTGCGGTTACTTCGAAGCACACCGACATGCTTCCTT------CT-TTTTTT-TCGTTA---TATT-CT-----CCTTGTGAGTCTCTGAGAAATAAATAGTG--AAAGACT---TAAA--------TGACGTTCATGCCGTCTTTTTA--TTTGG-CAAGCGCGATAAATCAAGCGTTAATATAT-GTAACCATGGGCGTTGTCATGCCTGACAAAGATTACAGTTATCTTTATTTGTAT-ATGAAAACTGATA---TTAACACTGACCAAATATTTTTATCAAG--------------------------TACTACA------TATGACAAT---CTATAT-TT-AAGCTCG--TT--TTTGC---ACTAAATGTTGAT------GTTACa
gi|11 : AATGTTACA--A-TACA-TT---AT--ATGATATCTCTA-CGA-A-T---GGTACAATAAAGT-ATATGTTG---T-TT---TT---A-CTTATTGTTAA----AGTT-C-TTG-ATC--AA---C-A------TATCGATGCAGTGACTGTGAAGCA-ACCCACCTGCTTCCTT------GG-GGTTTCGTCTCTA---CGTT-CTGTTCGCTTTGTGAGGCCCTGAGAAATAAATAGTG--AAACGCT---TATA--------TGATGTTTATGCCGTCT----A--CT-GG-CAAGCGCGATACATCACGCGTTTATATAT-AAAATCATAAGCATTATCATGa
gi|12 : acgttttacgctttctgttgtgctaaacatcaacatgtttgctaagtatgatatacttttccataatacataggcgtgatttacaacatcggtcaACAATAAA-TTATATGATG---A-TCCTTTT---A-TTTATTGTTGA----AGTT-C-TTG-GTT--AA---C-A------TATCGGTGCGGATACTGTGAAGCACACCGACCAACTTCCTTAAAGTTGG-TTTTTCGTCTCTA---CATT-CTATTCCCATTGTTAGTCGCTGAGAAATAAATAGTG--AAACGCT---TATA--------ATATGTTTATGCTGTCT----A--TT-GA-CAATCGCGATATATCAAGCGACTGTATAT--GGATTATAGGCGTTGTCATGCCTTGCAAAAGTTAAAGATATCTTTATTTGTATAATCAAAACTGATA---TTAGCACTGACCAAATA-TTTTATCAGGTAAATTA-C-----GAAACA------TACCACA------TATGGCCGT---TTGT
gi|13 : TTCCTT------AG-TT---CATCTATATAACATCACAAT--GCTTTATGAGGCCTTAAGAAA-AAATATTACCAAACGCTAAATATA--------GGATGTTCTT--------------TT-GGACAAGCG-----TA----------ACATAT-AAAAGCCAGGGCGTTGTCACGACTTGCAAAGATTACAAATAT-TTTATCTGCATAAACACAACTAATA---TAAGCACTGACTGAATAGTTTTATCAAGTAAATTACATGTACAAGACA------TTGTG-G------TATTGCAATAAGTTATA--AT-AAACTCG-ATT--TACT-----CTTAATGTTGAT------GTTgat
gi|14 : atttatagttgcgctaccaatgtaacgataaataggcctgtattgttttcatcaaaataggtgcaattgtttctaCAAGCGTA-ACATAT-AAAAGCAAGGGCGTTGTCACGACTTGCAAAGATAGCAATTAT-TTTATCTGCATAAACACAACTAATA---TAAGCACTGGCCGAATAGTTTTATCAAGTAAATTA-C-----AAGACATTGTGGTATCACA------TATGACAAG---TTATA--AT-ACACTCGATTTACTCTTT--------ATGTTGAT------
gi|15 : aatattaccaaacgctaaatataggatgttcttttggaGTAACATTAACACTTAGTGAAAAGACATGTT-TATTATAAATTGTCATTTGTGGTAAGTCTCCTATTTTTATAAATTACTTGATA-----GAAATA
gi|16 : aatatgcgccatgaaatctaaatAATGTAACATCAACATTTAGTATAAAAGAAATATATATTATAAATTGCCGTATAAGGCATGTATCTTA-----AT---TTAATTGATA-----AA
gi|2 : tgAGTGTTACATCAACATTTAGTAAAAATATAATTT-TATTATAAATTGCCATATGTGGCATGTCTCTTA-----AT---TTATTTGCTA-----AAAATACAATGTTACA--A-TAAA-TTTGTTTTAATAGCATCTTT--C-A-A-T---GTAAGACTATAGTTATATGATG---A-TC---TT---A-TTTATTGTTAA----AATT-C-TTG-ACT--AA---C-A------TATCGGTGCGGTTATTGTTAGGCACACTGACCTGCTTCCTT------GG-TTTTTCGTCTCTA---CATT-CTATTCGCGTTGTGAGGCCCTGAG----------------ACGCG---TTTA--------TGATGTTTATGCCGTCT----A--TT-GG-CAAGCGCGATATATCAAGCGTTTATATAT-AACATTATGGGCGTTGTCCCGACTTACAAAGATAACAGTTATCTTTATTTGCATAATCAGATCTGATA---TAAGCACTGCCCTAACATTTTTATCAAGTAAATAA-A-----GAGTCG------TGCCACA------AATGGCAAT---TTATA--AT-AAAATTG-TTTTGTTTTT---ACTAAATGTTGAT------GTTACGTG
gi|3 : tcgaattaaATAC--TGTTACA--A-TATA-ATTATAT--ATGACATCTCC--C-A-A-T---ATAACAATATAATTAT-----------------T---A-TTTATTGT-AA----AGTT-T-TTA-ATT--AA---C-A------TATCGGGGCCGTTACTGAGAAGTA-ACCCACTTGCTTCCTT------G--CTTTTCTTCTCTA---CATT-TTATTTGCTTTGTGAGGCCCTGAGAAATAAATAGTT--GAACGTT---TATA--------GGATGTTCATGTCGTAT----A--TT-GG-CAAGCGCGATAAATCAAGCGTTTATATATGAAAATCATGGGCGTCATCATGACTTGCAAAGATTACAGTTCTCTTTATTTGCATAATCAGAAGTGATA---TTAGCGCTGACCAAATATTTTTATCAAGTGAATTT-A-----GAGACA------TACCACA------AATGGCAAT---TTATAT-TT-AAACTCG-TTT--TTTTT---ACTAAATTTTGCT------GTTAC
gi|4 : atcaattttcattgtatggcgattcatggttttatgttatggtgcatatcatatgttagcatgtgtttT---TTATTCGATATCCGTAAAATACTATAT------A-TAAA-T--GTAT--ATTGTTTCACT--C-A-G-TTCTGTAACAATAAATTTATATGATG---T-TC---TT---A-TTTATTGTTTA----AGTT-C-TTG-ATT--AA---T-A------TATCGGTGCGGTTACTATGAAGCACACCGACGTGCTTCCTT------GG-TTTTACGTCTCTA---CATT-CTATTCACTTTGTGAGACCCTAAGAAATAAACGGTG--AAACGCT---TATA--------TGATGTTCATGCCGTCT----T--TT-GG-CAAGCGTGATATATCAGGCGTTTATATAT-AAAATCATGGGCGCTGTCATGCCTTGCAAAGATTACAGTTATCTTTATTTGCATAATCAGAAATGATATTTTTAGCACTGACCAAATAA-TTTATCAAGTAAATTA-A-----GAGATA------TACCATA------TATGACACT---TTTGAT--T-AAACTCG--GT--TTTGC---ACTAAATGTT
gi|5 : gaatgagatgttTGTTACACTACTAAA-TTTGTAT--ATAATATTTCC----------------CAAT---GTTACATGA-----A-T---------A-TTTATTGCT-------TTT-C-TTCCATTTCGA---C-GGTGTTTTATCGGTACTGTTACTGCGAAGCA-ACCAACCTGCTTCCTT------GGATTTTTCTTCTCTA---CATC-CTATTCGCTTTTTGAGGCCATGAGAAATAAATATCG--AAACGCT---TATA--------TGATGTTCATGCCGTCT----A--TT-GG-CAAGCGTGATATATCAAGCGTTTATATAT-AAAATCATGGGTGTTATCATAACCTGCAAAGATTACAGTTCTCTTTATTTGCATAATCAGAAGTGATA---TTAGCACTGACCAAATACTTTTATCAAGCAACTTT-A-----GAGACA------TACCATA------TATTGCAAT---TTATAT-TT-AAACTCG-TTT--TTTTTACAACTAAATGTTGCT------GTTACagtagtatatat
gi|6 : tatcccatgtagaactagtgtacTGTTACACTACTAAA-TTTGTAT--ATAATATTTCC----------------CAAT---GTTACATGA-----A-T---------A-TTTATTGCT-------TTT-C-TTCCATTTCGA---C-GGTGTTTTATCGGTACTGTTACTGCGAAGCA-ACCAACCTGCTTCCTT------GGATTTTTCTTCTCTA---CATC-CTATTCGCTTTTTGAGGCCATGAGAAATAAATATCG--AAACGCT---TATA--------TGATGTTCATGCCGTCT----A--TT-GG-CAAGCGTGATATATCAAGCGTTTATATAT-AAAATCATGGGTGTTATCATAACCTGCAAAGATTACAGTTCTCTTTATTTGCATAATCAGAAGTGATA---TTAGCACTGACCAAATACTTTTATCAAGCAACTTT-A-----GAGACA------TACCATA------TATTGCAAT---TTATAT-TT-AAACTCG-TTT--TTTTTACAACTAAATGTTGCT------GTTACagt
gi|7 : tatcccatgtagaactagtgtac-A-A-T---GACATAATAAAGT-ATATGCTGTTTA-TT---CT---A-TTTATTGTTAT----TGTT-C-TTG-ATT--GA---C-A------TATCAGTGCGGTTACTGTGAAGCA-ACCCACCTGCTTCCTT------GC-TTTTTTGTCTCTA---CATT-TTATTCGCTTTGTGAGGCCCTGAGAAATAAATAGTG--AAACTCT---TATAAAACAATATGATATTCATGCCGTCC----A--TT-GG-CAAGCGCGATATATCAAGCGTTTATATAT-AAAATCATGGGTATTGTCATGCCTTGCAAAGATTACAGTTATCTTTATTTGCATGATCAGAATTGATA---TTAACACTGACCAAACA-TTTCATCAAATTAATAA-A-----GAGACA------TTCCACATACACCTATGGCAAT---TGATA--AT-AA--TTA-TTT--TTTTA---ACTTAATGTTGATGGTACAGTTACGTGagt
gi|8 : aATGTTACA--A-CAGA-TTTGTAT--GAGACATCTCTA-C-GGA-T---GGTACAATAAAGT-ATGTGTTG---T-TC---TTCTTA-TTTATTGTTA------TTT-C-TT---TT--AATCAC-A------TATCGGTGCGGTTAGTGTGAAGCA-ACCCACCTGCTTCCTT------TG-GTTTTCGACTTTA---CATT-TTCTTTGCTTTGTGAGGCCCTGAGAAATAAATAGTG--AAACGCT---TATA--------TGATGTTCATGCCGTTT----A--TT-GG-CAAGCGCGATACAACAAGGGTTTATATAT-AAAATCATTGGCTTTATT----------AAGATTACAGTTCTCTTTATTTGCATAATCAGAAGTGATA---TAAGCACTGATTAAATAGTTTTATCAAGTAGATTA-A-----GAGACA------TAACACA------AATGGCAAT---TTATAC-TT-AAATTCG--TT--TTTTC---ATTAAATATTGAT------GTAACtatatacatacatatattcacaacatttact
gi|9 : tTGTAACA--A-TAAC-TTTATAT--GTGACATCTCTA-C-G-GCT---GGTACAATTAAGT-A-ATGATGTT-A-TT---TT---AATTTATTGTTTA----AGTT-C-TTG-ATT--AA---A-C------TATTTGTGCGGTTACTGCGAAGCA-ACCCACCTGCTTCTTT------GG-TTTTTCGTCGTTA---CATT-CTTTTCGTTTTGTGAGGCCCTTAAAAATAAATAGTG--AAACGCT---TATAATTA----TGATGTTCATGCCGTCT----A--TT-GG-CAAGCACGATACATCAAGCGTTTATATAT-AAAATCATTGGAGTTATCATGACTTGTAAATATTACAGTTTTCTTTATTTGCATAATCAGAAGTGACA---TTAGCACTGACCAAATATTTTTATTAAGTAAATTA-A-----GAGACA------TGCCACA------TATGGCAAT---TTATATGATAAAAAT---TTT--TTTTT---AATAAATGTTGAT------GTTaccagtacgcattaaaacttatatga
Alignments
lowQualScore : 1 33333 111 22222 11 333333333333333 1 222222222222222222 111111 2222222222222222 1 11111111 222 11 1111 111111
lowQualScore : 1 1 3 0 33333 777 1 55555 6 2 22 8 4 55 222222222222222 2 1 666666666666666666 3 333333 3 3 6 0000000000000000 1 9 3 888888 6 0 555 3 44 555 77777777 6666 44 3 3 2 0 0 1 555 0 7 3 77777 888888 888888 555 000 3 22 99 3333 000000
lowQualScore : . . . . ..... ... . ..... . . .. . . .. ............... . . .................. . ...... . . . ................ . . . ...... . . ... . .. ... ........ .... .. . . . . . . ... . . . ..... ...... ...... ... ... . .. .. .... ......
lowQualScore : 0 0 3 7 33333 555 2 00000 0 2 22 9 4 55 444444444444444 6 4 999999999999999999 3 111111 3 3 7 2222222222222222 4 2 1 888888 2 8 444 1 22 444 77777777 5555 22 1 1 9 2 4 0 444 2 0 1 77777 888888 888888 444 222 3 88 22 9999 555555
consensus : NNNNNNNNNAGTGTAACATCAACATTTAGTAAAAANANAATTT-TATTATAAATTGCCGTATGTGGCATGTCTCTTA-----AT---TTATTTGATA-----AAAATACAATGTTACA--A-TAAA-TTTGTAT--ATGACATCTCTA-C-A-A-T---GGNACAATAAAGTTATATGATG---A-TC---TT---A-TTTATTGTTAA----AGTT-C-TTG-ATT--AA---C-A------TATCGGTGCGGTTACTGCGAAGCACACCGACCTGCTTCCTT------GG-TTTTTCGTCTCTA---CATT-CTATTCGCTTTGTGAGGCCCTGAGAAATAAATAGTG--AAACGCT---TATA--------TGATGTTCATGCCGTCT----A--TT-GG-CAAGCGCGATATATCAAGCGTTTATATAT-AAAATCATGGGCGTTGTCATGACTTGCAAAGATTACAGTTATCTTTATTTGCATAATCAGAANTGATA---TTAGCACTGACCAAATANTTTTATCAAGTAAATTA-A-----GAGACA------TACCACA------TATGGCAAT---TTATAT-NT-AAACTCG-TTT--TTTTT---ACTAAATGTTGAT------GTTACGTG
Reference ( family-2965 ) : NNNNNNNNNAGTGTAACATCAACATTTAGTAAAAANANAATTT-TATTATAAATTGCCGTATGTGGCATGTCTCTTA-----AT---TTATTTGATA-----AAAATACAATGTTACA--A-TAAA-TTTGTAT--ATGACATCTCTA-C-A-A-T---GGNACAATAAAGTTATATGATG---A-TC---TT---A-TTTATTGTTAA----AGTT-C-TTG-ATT--AA---C-A------TATCGGTGCGGTTACTGCGAAGCACACCGACCTGCTTCCTT------GG-TTTTTCGTCTCTA---CATT-CTATTCGCTTTGTGAGGCCCTGAGAAATAAATAGTG--AAACGCT---TATA--------TGATGTTCATGCCGTCT----A--TT-GG-CAAGCGCGATATATCAAGCGTTTATATAT-AAAATCATGGGCGTTGTCATGACTTGCAAAGATTACAGTTATCTTTATTTGCATAATCAGAANTGATA---TTAGCACTGACCAAATANTTTTATCAAGTAAATTA-A-----GAGACA------TACCACA------TATGGCAAT---TTATAT-NT-AAACTCG-TTT--TTTTT---ACTAAATGTTGAT------GTTACGTG
gi|1 : CAGTGTAACA--A-TAAAGTTTGTGT------TATCTCCATT-A-A-T---GAAAC-ATGAAGATTTATGGTA---ACTC---T------TTCATT-TTAACGATAATTACATCG-ATTTCAT---CGG------TATCAGTGCGGTAACTGTGAAACACACCGGCCTA-----TC------GG-CTGTTCGTCCCTA---CACT-ATATTCGCTTTGTGAGGTCATGAGAAATAAATTGAC--AAACGCT---TATA--------TGACGTGCACGCCGTCT----ATTTT-GG-CAAGTGCGTTTTACCAAGCGTTTATATAT-AAAACCATCGGCGCTGTCATGACTTGCAAAGATTACAGTTATCTTTATATGCATAATTAGGACGAATA---TCAGCACTGACCAAATAGTTTCATCAAGTAAATAA-A-----GAGACA------TGCCACA------TATGGCAAT---TTATA--AT-AAACTCG---G--TTTTC---ACTCAATGTTGAT------GTTAC
gi|10 : gtcacgactgctttgcatattataatttctgctatactatttactgatttctggacttcagcaacactaaagttttacatcgaatatttatcttcatAT--ATGACATCTCTA-CGA-A-T---GGTACAATAAAGT-ATATGATC---A-TC---TTCTTG-TTAATTGTTAA----AGTT-C-TTG-ATT--AA---C-A------TATCGGTGCGGTTACTTCGAAGCACACCGACATGCTTCCTT------CT-TTTTTT-TCGTTA---TATT-CT-----CCTTGTGAGTCTCTGAGAAATAAATAGTG--AAAGACT---TAAA--------TGACGTTCATGCCGTCTTTTTA--TTTGG-CAAGCGCGATAAATCAAGCGTTAATATAT-GTAACCATGGGCGTTGTCATGCCTGACAAAGATTACAGTTATCTTTATTTGTAT-ATGAAAACTGATA---TTAACACTGACCAAATATTTTTATCAAG--------------------------TACTACA------TATGACAAT---CTATAT-TT-AAGCTCG--TT--TTTGC---ACTAAATGTTGAT------GTTACa
gi|11 : AATGTTACA--A-TACA-TT---AT--ATGATATCTCTA-CGA-A-T---GGTACAATAAAGT-ATATGTTG---T-TT---TT---A-CTTATTGTTAA----AGTT-C-TTG-ATC--AA---C-A------TATCGATGCAGTGACTGTGAAGCA-ACCCACCTGCTTCCTT------GG-GGTTTCGTCTCTA---CGTT-CTGTTCGCTTTGTGAGGCCCTGAGAAATAAATAGTG--AAACGCT---TATA--------TGATGTTTATGCCGTCT----A--CT-GG-CAAGCGCGATACATCACGCGTTTATATAT-AAAATCATAAGCATTATCATGa
gi|12 : acgttttacgctttctgttgtgctaaacatcaacatgtttgctaagtatgatatacttttccataatacataggcgtgatttacaacatcggtcaACAATAAA-TTATATGATG---A-TCCTTTT---A-TTTATTGTTGA----AGTT-C-TTG-GTT--AA---C-A------TATCGGTGCGGATACTGTGAAGCACACCGACCAACTTCCTTAAAGTTGG-TTTTTCGTCTCTA---CATT-CTATTCCCATTGTTAGTCGCTGAGAAATAAATAGTG--AAACGCT---TATA--------ATATGTTTATGCTGTCT----A--TT-GA-CAATCGCGATATATCAAGCGACTGTATAT--GGATTATAGGCGTTGTCATGCCTTGCAAAAGTTAAAGATATCTTTATTTGTATAATCAAAACTGATA---TTAGCACTGACCAAATA-TTTTATCAGGTAAATTA-C-----GAAACA------TACCACA------TATGGCCGT---TTGT
gi|13 : TTCCTT------AG-TT---CATCTATATAACATCACAAT--GCTTTATGAGGCCTTAAGAAA-AAATATTACCAAACGCTAAATATA--------GGATGTTCTT--------------TT-GGACAAGCG-----TA----------ACATAT-AAAAGCCAGGGCGTTGTCACGACTTGCAAAGATTACAAATAT-TTTATCTGCATAAACACAACTAATA---TAAGCACTGACTGAATAGTTTTATCAAGTAAATTACATGTACAAGACA------TTGTG-G------TATTGCAATAAGTTATA--AT-AAACTCG-ATT--TACT-----CTTAATGTTGAT------GTTgat
gi|14 : atttatagttgcgctaccaatgtaacgataaataggcctgtattgttttcatcaaaataggtgcaattgtttctaCAAGCGTA-ACATAT-AAAAGCAAGGGCGTTGTCACGACTTGCAAAGATAGCAATTAT-TTTATCTGCATAAACACAACTAATA---TAAGCACTGGCCGAATAGTTTTATCAAGTAAATTA-C-----AAGACATTGTGGTATCACA------TATGACAAG---TTATA--AT-ACACTCGATTTACTCTTT--------ATGTTGAT------
gi|15 : aatattaccaaacgctaaatataggatgttcttttggaGTAACATTAACACTTAGTGAAAAGACATGTT-TATTATAAATTGTCATTTGTGGTAAGTCTCCTATTTTTATAAATTACTTGATA-----GAAATA
gi|16 : aatatgcgccatgaaatctaaatAATGTAACATCAACATTTAGTATAAAAGAAATATATATTATAAATTGCCGTATAAGGCATGTATCTTA-----AT---TTAATTGATA-----AA
gi|2 : tgAGTGTTACATCAACATTTAGTAAAAATATAATTT-TATTATAAATTGCCATATGTGGCATGTCTCTTA-----AT---TTATTTGCTA-----AAAATACAATGTTACA--A-TAAA-TTTGTTTTAATAGCATCTTT--C-A-A-T---GTAAGACTATAGTTATATGATG---A-TC---TT---A-TTTATTGTTAA----AATT-C-TTG-ACT--AA---C-A------TATCGGTGCGGTTATTGTTAGGCACACTGACCTGCTTCCTT------GG-TTTTTCGTCTCTA---CATT-CTATTCGCGTTGTGAGGCCCTGAG----------------ACGCG---TTTA--------TGATGTTTATGCCGTCT----A--TT-GG-CAAGCGCGATATATCAAGCGTTTATATAT-AACATTATGGGCGTTGTCCCGACTTACAAAGATAACAGTTATCTTTATTTGCATAATCAGATCTGATA---TAAGCACTGCCCTAACATTTTTATCAAGTAAATAA-A-----GAGTCG------TGCCACA------AATGGCAAT---TTATA--AT-AAAATTG-TTTTGTTTTT---ACTAAATGTTGAT------GTTACGTG
gi|3 : tcgaattaaATAC--TGTTACA--A-TATA-ATTATAT--ATGACATCTCC--C-A-A-T---ATAACAATATAATTAT-----------------T---A-TTTATTGT-AA----AGTT-T-TTA-ATT--AA---C-A------TATCGGGGCCGTTACTGAGAAGTA-ACCCACTTGCTTCCTT------G--CTTTTCTTCTCTA---CATT-TTATTTGCTTTGTGAGGCCCTGAGAAATAAATAGTT--GAACGTT---TATA--------GGATGTTCATGTCGTAT----A--TT-GG-CAAGCGCGATAAATCAAGCGTTTATATATGAAAATCATGGGCGTCATCATGACTTGCAAAGATTACAGTTCTCTTTATTTGCATAATCAGAAGTGATA---TTAGCGCTGACCAAATATTTTTATCAAGTGAATTT-A-----GAGACA------TACCACA------AATGGCAAT---TTATAT-TT-AAACTCG-TTT--TTTTT---ACTAAATTTTGCT------GTTAC
gi|4 : atcaattttcattgtatggcgattcatggttttatgttatggtgcatatcatatgttagcatgtgtttT---TTATTCGATATCCGTAAAATACTATAT------A-TAAA-T--GTAT--ATTGTTTCACT--C-A-G-TTCTGTAACAATAAATTTATATGATG---T-TC---TT---A-TTTATTGTTTA----AGTT-C-TTG-ATT--AA---T-A------TATCGGTGCGGTTACTATGAAGCACACCGACGTGCTTCCTT------GG-TTTTACGTCTCTA---CATT-CTATTCACTTTGTGAGACCCTAAGAAATAAACGGTG--AAACGCT---TATA--------TGATGTTCATGCCGTCT----T--TT-GG-CAAGCGTGATATATCAGGCGTTTATATAT-AAAATCATGGGCGCTGTCATGCCTTGCAAAGATTACAGTTATCTTTATTTGCATAATCAGAAATGATATTTTTAGCACTGACCAAATAA-TTTATCAAGTAAATTA-A-----GAGATA------TACCATA------TATGACACT---TTTGAT--T-AAACTCG--GT--TTTGC---ACTAAATGTT
gi|5 : gaatgagatgttTGTTACACTACTAAA-TTTGTAT--ATAATATTTCC----------------CAAT---GTTACATGA-----A-T---------A-TTTATTGCT-------TTT-C-TTCCATTTCGA---C-GGTGTTTTATCGGTACTGTTACTGCGAAGCA-ACCAACCTGCTTCCTT------GGATTTTTCTTCTCTA---CATC-CTATTCGCTTTTTGAGGCCATGAGAAATAAATATCG--AAACGCT---TATA--------TGATGTTCATGCCGTCT----A--TT-GG-CAAGCGTGATATATCAAGCGTTTATATAT-AAAATCATGGGTGTTATCATAACCTGCAAAGATTACAGTTCTCTTTATTTGCATAATCAGAAGTGATA---TTAGCACTGACCAAATACTTTTATCAAGCAACTTT-A-----GAGACA------TACCATA------TATTGCAAT---TTATAT-TT-AAACTCG-TTT--TTTTTACAACTAAATGTTGCT------GTTACagtagtatatat
gi|6 : tatcccatgtagaactagtgtacTGTTACACTACTAAA-TTTGTAT--ATAATATTTCC----------------CAAT---GTTACATGA-----A-T---------A-TTTATTGCT-------TTT-C-TTCCATTTCGA---C-GGTGTTTTATCGGTACTGTTACTGCGAAGCA-ACCAACCTGCTTCCTT------GGATTTTTCTTCTCTA---CATC-CTATTCGCTTTTTGAGGCCATGAGAAATAAATATCG--AAACGCT---TATA--------TGATGTTCATGCCGTCT----A--TT-GG-CAAGCGTGATATATCAAGCGTTTATATAT-AAAATCATGGGTGTTATCATAACCTGCAAAGATTACAGTTCTCTTTATTTGCATAATCAGAAGTGATA---TTAGCACTGACCAAATACTTTTATCAAGCAACTTT-A-----GAGACA------TACCATA------TATTGCAAT---TTATAT-TT-AAACTCG-TTT--TTTTTACAACTAAATGTTGCT------GTTACagt
gi|7 : tatcccatgtagaactagtgtac-A-A-T---GACATAATAAAGT-ATATGCTGTTTA-TT---CT---A-TTTATTGTTAT----TGTT-C-TTG-ATT--GA---C-A------TATCAGTGCGGTTACTGTGAAGCA-ACCCACCTGCTTCCTT------GC-TTTTTTGTCTCTA---CATT-TTATTCGCTTTGTGAGGCCCTGAGAAATAAATAGTG--AAACTCT---TATAAAACAATATGATATTCATGCCGTCC----A--TT-GG-CAAGCGCGATATATCAAGCGTTTATATAT-AAAATCATGGGTATTGTCATGCCTTGCAAAGATTACAGTTATCTTTATTTGCATGATCAGAATTGATA---TTAACACTGACCAAACA-TTTCATCAAATTAATAA-A-----GAGACA------TTCCACATACACCTATGGCAAT---TGATA--AT-AA--TTA-TTT--TTTTA---ACTTAATGTTGATGGTACAGTTACGTGagt
gi|8 : aATGTTACA--A-CAGA-TTTGTAT--GAGACATCTCTA-C-GGA-T---GGTACAATAAAGT-ATGTGTTG---T-TC---TTCTTA-TTTATTGTTA------TTT-C-TT---TT--AATCAC-A------TATCGGTGCGGTTAGTGTGAAGCA-ACCCACCTGCTTCCTT------TG-GTTTTCGACTTTA---CATT-TTCTTTGCTTTGTGAGGCCCTGAGAAATAAATAGTG--AAACGCT---TATA--------TGATGTTCATGCCGTTT----A--TT-GG-CAAGCGCGATACAACAAGGGTTTATATAT-AAAATCATTGGCTTTATT----------AAGATTACAGTTCTCTTTATTTGCATAATCAGAAGTGATA---TAAGCACTGATTAAATAGTTTTATCAAGTAGATTA-A-----GAGACA------TAACACA------AATGGCAAT---TTATAC-TT-AAATTCG--TT--TTTTC---ATTAAATATTGAT------GTAACtatatacatacatatattcacaacatttact
gi|9 : tTGTAACA--A-TAAC-TTTATAT--GTGACATCTCTA-C-G-GCT---GGTACAATTAAGT-A-ATGATGTT-A-TT---TT---AATTTATTGTTTA----AGTT-C-TTG-ATT--AA---A-C------TATTTGTGCGGTTACTGCGAAGCA-ACCCACCTGCTTCTTT------GG-TTTTTCGTCGTTA---CATT-CTTTTCGTTTTGTGAGGCCCTTAAAAATAAATAGTG--AAACGCT---TATAATTA----TGATGTTCATGCCGTCT----A--TT-GG-CAAGCACGATACATCAAGCGTTTATATAT-AAAATCATTGGAGTTATCATGACTTGTAAATATTACAGTTTTCTTTATTTGCATAATCAGAAGTGACA---TTAGCACTGACCAAATATTTTTATTAAGTAAATTA-A-----GAGACA------TGCCACA------TATGGCAAT---TTATATGATAAAAAT---TTT--TTTTT---AATAAATGTTGAT------GTTaccagtacgcattaaaacttatatga
blockSeqs : A A A . . A TCCGT A T CT C . TA CAGTTCTGTA A T ATCATCTTCTT A AA . . C TCGACGGTGTTT C C G AAAGTT A TAA A CC AAA AAACAATA TTTT . T A G C TTT T C TGTAC TTGTGG TACACC AAG TGA A AT AC TACA GGTACA
blockSeqs : T T . . . T . A T CT C . . ACGAATGGT A T ATGATCCTTTT . AA . . C TCGACGGTGTTT T C C . A . . . . ATTA . . . . . C . G . . . . . TT . A TG TACA .
blockSeqs : . T . T T . . . . ACGAATGGT A T CTGTTTATTCT . GA . . . AATCACA T C G . . . . . . . . . . . . C . G . . . . . TT . T . C .
blockSeqs : . T . . . . ACGGATGGT A T TTGTTCTTCTT . AA . . . AACA T C G . . . . . . . . . . . . C . T . . . . . TT . T . T .
blockSeqs : T . . . . ACGGCTGGT A T ATGTTATTTT . AA . . . AACA A . C . . . . . . . . . . . . C . T . . . . . TT . T . T .
blockSeqs : T . . . . CAATGTA A T TTGTTTTT . TA . . . AACA T . G . . . . . . . . . . . . G . A . . . . . CT . T . T .
blockSeqs : A . . . . CAATATA A . ATGATCTT . AT . . . AACA C . A . . . . . . . . . . . . A . C . . . . . A . T . C .
blockSeqs : . . . . . . A . ATGTTCTT . TA . . . AACA C . A . . . . . . . . . . . . G . C . . . . . A . T . A .
blockSeqs : . . T . AAT . A . . . AATA T . C . . . . . . . . . . . . G . G . . . . . A . . . C .
blockSeqs : . . AAT . . . . . GACA T . C . . . . . . . . . . . . T . T . . . . . T . . . T .
blockSeqs : . . T . . . . . AAAC C . C . . . . . . . . . . . . G . . . . . . . A . . . .
blockSeqs : . . . . . . . . . . . . G . . . . . . .
blockSeqs : .
blockSeqCons : ATGTTCTT********** AA**** AACA************ ** T*
originalCons : NNNNNNNNNAGTGTAACATCAACATTTAGTAAAAANANAATTT-TATTATAAATTGCCGTATGTGGCATGTCTCTTA-----AT---TTATTTGATA-----AAAATACAATGTTACA--A-TAAA-TTTGTAT--ATGACATCTCTA-C-A-A-T---GGNACAATAAAGTTATATGATG---A-TC---TT---A-TTTATTGTTAA----AGTT-C-TTG-ATT--AA---C-A------TATCGGTGCGGTTACTGCGAAGCACACCGACCTGCTTCCTT------GG-TTTTTCGTCTCTA---CATT-CTATTCGCTTTGTGAGGCCCTGAGAAATAAATAGTG--AAACGCT---TATA--------TGATGTTCATGCCGTCT----A--TT-GG-CAAGCGCGATATATCAAGCGTTTATATAT-AAAATCATGGGCGTTGTCATGACTTGCAAAGATTACAGTTATCTTTATTTGCATAATCAGAANTGATA---TTAGCACTGACCAAATANTTTTATCAAGTAAATTA-A-----GAGACA------TACCACA------TATGGCAAT---TTATAT-NT-AAACTCG-TTT--TTTTT---ACTAAATGTTGAT------GTTACGTG
finalCons : NNNNNNNNNAGTGTAACATCAACATTTAGTAAAAANANAATTT-TATTATAAATTGCCGTATGTGGCATGTCTCTTA-----AT---TTATTTGATA-----AAAATACAATGTTACA--A-TAAA-TTTGTAT--ATGACATCTCTA-C-A-A-T---GGNACAATAAAGTTATATGATGTTCTT----------A-TTTATTGTTAA----AGTT-C-TTG-ATTAACA------------TATCGGTGCGGTTACTGCGAAGCACACCGACCTGCTTCCTT------GG-TTTTTCGTCTCTA---CATT-CTATTCGCTTTGTGAGGCCCTGAGAAATAAATAGTG--AAACGCT---TATA--------TGATGTTCATGCCGTCT----A--TT-GG-CAAGCGCGATATATCAAGCGTTTATATAT-AAAATCATGGGCGTTGTCATGACTTGCAAAGATTACAGTTATCTTTATTTGCATAATCAGAANTGATA---TTAGCACTGACCAAATANTTTTATCAAGTAAATTA-A-----GAGACA------TACCACA------TATGGCAAT---TTATAT-NT-AAACTCGT-TT--TTTTT---ACTAAATGTTGAT------GTTACGTG
Alignments
lowQualScore : 1 33333 111 22222 11 11 1 22222222 1111111 1 11111111 222 11 1111 111111
lowQualScore : 1 1 3 0 33333 777 1 55555 6 2 22 8 4 55 99 7 3 3 666 55 6 1 1 4 4 88888 11111111 99 2222222 3 3 0 44 66666 1 9 3 888888 6 0 555 3 44 555 77777777 6666 44 3 3 2 0 0 1 555 0 7 3 77777 888888 888888 555 000 3 22 99 3333 000000
lowQualScore : . . . . ..... ... . ..... . . .. . . .. .. . . . ... .. . . . . . ..... ........ .. ....... . . . .. ..... . . . ...... . . ... . .. ... ........ .... .. . . . . . . ... . . . ..... ...... ...... ... ... . .. .. .... ......
lowQualScore : 0 0 3 7 33333 555 2 00000 0 2 22 9 4 55 55 3 6 6 444 33 7 8 4 5 6 88888 88888888 22 2222222 3 3 4 66 88888 4 2 1 888888 2 8 444 1 22 444 77777777 5555 22 1 1 9 2 4 0 444 2 0 1 77777 888888 888888 444 222 3 88 22 9999 555555
consensus : NNNNNNNNNAGTGTAACATCAACATTTAGTAAAAANANAATTT-TATTATAAATTGCCGTATGTGGCATGTCTCTTA-----AT---TTATTTGATA-----AAAATACAATGTTACA--A-TAAA-TTTGTAT--ATGACATCTCTA-C-A-A-T---GNNACAATAA-AGTTATATGNT-G---TTC---TT---ATTT--ATTGTTAA----AGTT-C-TTGATT--AA---C-ATATCGGTGCGGTTACTGCGAAGCACACCGACCTGCTTCCTT------GG-TTTTTCGTCTCTA---CATT-CTATTCGCTTTGTGAGGCCCTGAGAAATAAATAGTG--AAACGCT---TATA--------TGATGTTCATGCCGTCT----A--TT-GG-CAAGCGCGATATATCAAGCGTTTATATAT-AAAATCATGGGCGTTGTCATGACTTGCAAAGATTACAGTTATCTTTATTTGCATAATCAGAANTGATA---TTAGCACTGACCAAATANTTTTATCAAGTAAATTA-A-----GAGACA------TACCACA------TATGGCAAT---TTATAT-NT-AAACTCG-TTT--TTTTT---ACTAAATGTTGAT------GTTACGTG
Reference ( family-2965 ) : NNNNNNNNNAGTGTAACATCAACATTTAGTAAAAANANAATTT-TATTATAAATTGCCGTATGTGGCATGTCTCTTA-----AT---TTATTTGATA-----AAAATACAATGTTACA--A-TAAA-TTTGTAT--ATGACATCTCTA-C-A-A-T---GGNACAATAA-AGTTATATGAT-G---TTC---TT---ATTT--ATTGTTAA----AGTT-C-TTGATT--AA---C-ATATCGGTGCGGTTACTGCGAAGCACACCGACCTGCTTCCTT------GG-TTTTTCGTCTCTA---CATT-CTATTCGCTTTGTGAGGCCCTGAGAAATAAATAGTG--AAACGCT---TATA--------TGATGTTCATGCCGTCT----A--TT-GG-CAAGCGCGATATATCAAGCGTTTATATAT-AAAATCATGGGCGTTGTCATGACTTGCAAAGATTACAGTTATCTTTATTTGCATAATCAGAANTGATA---TTAGCACTGACCAAATANTTTTATCAAGTAAATTA-A-----GAGACA------TACCACA------TATGGCAAT---TTATAT-NT-AAACTCG-TTT--TTTTT---ACTAAATGTTGAT------GTTACGTG
gi|1 : CAGTGTAACA--A-TAAAGTTTGTGT------TATCTCCATT-A-A-T---GAAAC-ATGA-AGATTTATGGTAA---CTC---T-----TTC--ATT-TTAACGATAATTACATCGATTTCAT---CGGTATCAGTGCGGTAACTGTGAAACACACCGGCCTA-----TC------GG-CTGTTCGTCCCTA---CACT-ATATTCGCTTTGTGAGGTCATGAGAAATAAATTGAC--AAACGCT---TATA--------TGACGTGCACGCCGTCT----ATTTT-GG-CAAGTGCGTTTTACCAAGCGTTTATATAT-AAAACCATCGGCGCTGTCATGACTTGCAAAGATTACAGTTATCTTTATATGCATAATTAGGACGAATA---TCAGCACTGACCAAATAGTTTCATCAAGTAAATAA-A-----GAGACA------TGCCACA------TATGGCAAT---TTATA--AT-AAACTCG---G--TTTTC---ACTCAATGTTGAT------GTTAC
gi|10 : gtcacgactgctttgcatattataatttctgctatactatttactgatttctggacttcagcaacactaaagttttacatcgaatatttatcttcatAT--ATGACATCTCTA-CGA-A-T---GGTACAATAA-AGT-ATATGAT-CATCTTC---TT---GTTA--ATTGTTAA----AGTT-C-TTGATT--AA---C-ATATCGGTGCGGTTACTTCGAAGCACACCGACATGCTTCCTT------CT-TTTTTT-TCGTTA---TATT-CT-----CCTTGTGAGTCTCTGAGAAATAAATAGTG--AAAGACT---TAAA--------TGACGTTCATGCCGTCTTTTTA--TTTGG-CAAGCGCGATAAATCAAGCGTTAATATAT-GTAACCATGGGCGTTGTCATGCCTGACAAAGATTACAGTTATCTTTATTTGTAT-ATGAAAACTGATA---TTAACACTGACCAAATATTTTTATCAAG--------------------------TACTACA------TATGACAAT---CTATAT-TT-AAGCTCG--TT--TTTGC---ACTAAATGTTGAT------GTTACa
gi|11 : AATGTTACA--A-TACA-TT---AT--ATGATATCTCTA-CGA-A-T---GGTACAATAA-AGT-ATATGTT-G---TTT---TT---ACTT--ATTGTTAA----AGTT-C-TTGATC--AA---C-ATATCGATGCAGTGACTGTGAAGCA-ACCCACCTGCTTCCTT------GG-GGTTTCGTCTCTA---CGTT-CTGTTCGCTTTGTGAGGCCCTGAGAAATAAATAGTG--AAACGCT---TATA--------TGATGTTTATGCCGTCT----A--CT-GG-CAAGCGCGATACATCACGCGTTTATATAT-AAAATCATAAGCATTATCATGa
gi|12 : acgttttacgctttctgttgtgctaaacatcaacatgtttgctaagtatgatatacttttccataatacataggcgtgatttacaacatcggtcaACAATAA-A-TTATATGAT-G---ATCCTTTT---ATTT--ATTGTTGA----AGTT-C-TTGGTT--AA---C-ATATCGGTGCGGATACTGTGAAGCACACCGACCAACTTCCTTAAAGTTGG-TTTTTCGTCTCTA---CATT-CTATTCCCATTGTTAGTCGCTGAGAAATAAATAGTG--AAACGCT---TATA--------ATATGTTTATGCTGTCT----A--TT-GA-CAATCGCGATATATCAAGCGACTGTATAT--GGATTATAGGCGTTGTCATGCCTTGCAAAAGTTAAAGATATCTTTATTTGTATAATCAAAACTGATA---TTAGCACTGACCAAATA-TTTTATCAGGTAAATTA-C-----GAAACA------TACCACA------TATGGCCGT---TTGT
gi|13 : TTCCTT------AG-TT---CATCTATATAACATCACAAT--GCTTTATGAGGCCTTAAGAAA-AAATATTACCAAACGCTAAATATA--------GGATGTTCTT--------------TT-GGACAAGCG-----TA----------ACATAT-AAAAGCCAGGGCGTTGTCACGACTTGCAAAGATTACAAATAT-TTTATCTGCATAAACACAACTAATA---TAAGCACTGACTGAATAGTTTTATCAAGTAAATTACATGTACAAGACA------TTGTG-G------TATTGCAATAAGTTATA--AT-AAACTCG-ATT--TACT-----CTTAATGTTGAT------GTTgat
gi|14 : atttatagttgcgctaccaatgtaacgataaataggcctgtattgttttcatcaaaataggtgcaattgtttctaCAAGCGTA-ACATAT-AAAAGCAAGGGCGTTGTCACGACTTGCAAAGATAGCAATTAT-TTTATCTGCATAAACACAACTAATA---TAAGCACTGGCCGAATAGTTTTATCAAGTAAATTA-C-----AAGACATTGTGGTATCACA------TATGACAAG---TTATA--AT-ACACTCGATTTACTCTTT--------ATGTTGAT------
gi|15 : aatattaccaaacgctaaatataggatgttcttttggaGTAACATTAACACTTAGTGAAAAGACATGTT-TATTATAAATTGTCATTTGTGGTAAGTCTCCTATTTTTATAAATTACTTGATA-----GAAATA
gi|16 : aatatgcgccatgaaatctaaatAATGTAACATCAACATTTAGTATAAAAGAAATATATATTATAAATTGCCGTATAAGGCATGTATCTTA-----AT---TTAATTGATA-----AA
gi|2 : tgAGTGTTACATCAACATTTAGTAAAAATATAATTT-TATTATAAATTGCCATATGTGGCATGTCTCTTA-----AT---TTATTTGCTA-----AAAATACAATGTTACA--A-TAAA-TTTGTTTTAATAGCATCTTT--C-A-A-T---GTAAGACTAT-AGTTATATGAT-G---ATC---TT---ATTT--ATTGTTAA----AATT-C-TTGACT--AA---C-ATATCGGTGCGGTTATTGTTAGGCACACTGACCTGCTTCCTT------GG-TTTTTCGTCTCTA---CATT-CTATTCGCGTTGTGAGGCCCTGAG----------------ACGCG---TTTA--------TGATGTTTATGCCGTCT----A--TT-GG-CAAGCGCGATATATCAAGCGTTTATATAT-AACATTATGGGCGTTGTCCCGACTTACAAAGATAACAGTTATCTTTATTTGCATAATCAGATCTGATA---TAAGCACTGCCCTAACATTTTTATCAAGTAAATAA-A-----GAGTCG------TGCCACA------AATGGCAAT---TTATA--AT-AAAATTG-TTTTGTTTTT---ACTAAATGTTGAT------GTTACGTG
gi|3 : tcgaattaaATAC--TGTTACA--A-TATA-ATTATAT--ATGACATCTCC--C-A-A-T---ATAACAATAT-AATTAT-----------------T---ATTT--ATTGT-AA----AGTT-T-TTAATT--AA---C-ATATCGGGGCCGTTACTGAGAAGTA-ACCCACTTGCTTCCTT------G--CTTTTCTTCTCTA---CATT-TTATTTGCTTTGTGAGGCCCTGAGAAATAAATAGTT--GAACGTT---TATA--------GGATGTTCATGTCGTAT----A--TT-GG-CAAGCGCGATAAATCAAGCGTTTATATATGAAAATCATGGGCGTCATCATGACTTGCAAAGATTACAGTTCTCTTTATTTGCATAATCAGAAGTGATA---TTAGCGCTGACCAAATATTTTTATCAAGTGAATTT-A-----GAGACA------TACCACA------AATGGCAAT---TTATAT-TT-AAACTCG-TTT--TTTTT---ACTAAATTTTGCT------GTTAC
gi|4 : atcaattttcattgtatggcgattcatggttttatgttatggtgcatatcatatgttagcatgtgtttT---TTATTCGATATCCGTAAAATACTATAT------A-TAAA-T--GTAT--ATTGTTTCACT--C-A-G-TTCTGTAACAATAA-ATTTATATGAT-G---TTC---TT---ATTT--ATTGTTTA----AGTT-C-TTGATT--AA---T-ATATCGGTGCGGTTACTATGAAGCACACCGACGTGCTTCCTT------GG-TTTTACGTCTCTA---CATT-CTATTCACTTTGTGAGACCCTAAGAAATAAACGGTG--AAACGCT---TATA--------TGATGTTCATGCCGTCT----T--TT-GG-CAAGCGTGATATATCAGGCGTTTATATAT-AAAATCATGGGCGCTGTCATGCCTTGCAAAGATTACAGTTATCTTTATTTGCATAATCAGAAATGATATTTTTAGCACTGACCAAATAA-TTTATCAAGTAAATTA-A-----GAGATA------TACCATA------TATGACACT---TTTGAT--T-AAACTCG--GT--TTTGC---ACTAAATGTT
gi|5 : gaatgagatgttTGTTACACTACTAAA-TTTGTAT--ATAATATTTCC--C-A-A-T---GTTACATGAATATTTAT-TGCT-T---TTC---TTCC-ATTTCGACGGT--------GTT-T-T----------------ATCGGTACTGTTACTGCGAAGCA-ACCAACCTGCTTCCTT------GGATTTTTCTTCTCTA---CATC-CTATTCGCTTTTTGAGGCCATGAGAAATAAATATCG--AAACGCT---TATA--------TGATGTTCATGCCGTCT----A--TT-GG-CAAGCGTGATATATCAAGCGTTTATATAT-AAAATCATGGGTGTTATCATAACCTGCAAAGATTACAGTTCTCTTTATTTGCATAATCAGAAGTGATA---TTAGCACTGACCAAATACTTTTATCAAGCAACTTT-A-----GAGACA------TACCATA------TATTGCAAT---TTATAT-TT-AAACTCG-TTT--TTTTTACAACTAAATGTTGCT------GTTACagtagtatatat
gi|6 : tatcccatgtagaactagtgtacTGTTACACTACTAAA-TTTGTAT--ATAATATTTCC--C-A-A-T---GTTACATGAATATTTAT-TGCT-T---TTC---TTCC-ATTTCGACGGT--------GTT-T-T----------------ATCGGTACTGTTACTGCGAAGCA-ACCAACCTGCTTCCTT------GGATTTTTCTTCTCTA---CATC-CTATTCGCTTTTTGAGGCCATGAGAAATAAATATCG--AAACGCT---TATA--------TGATGTTCATGCCGTCT----A--TT-GG-CAAGCGTGATATATCAAGCGTTTATATAT-AAAATCATGGGTGTTATCATAACCTGCAAAGATTACAGTTCTCTTTATTTGCATAATCAGAAGTGATA---TTAGCACTGACCAAATACTTTTATCAAGCAACTTT-A-----GAGACA------TACCATA------TATTGCAAT---TTATAT-TT-AAACTCG-TTT--TTTTTACAACTAAATGTTGCT------GTTACagt
gi|7 : tatcccatgtagaactagtgtac-A-A-T---GACATAATAA-AGT-ATATGCT-G---TTTATTCT---ATTT--ATTGTTAT----TGTT-C-TTGATT--GA---C-ATATCAGTGCGGTTACTGTGAAGCA-ACCCACCTGCTTCCTT------GC-TTTTTTGTCTCTA---CATT-TTATTCGCTTTGTGAGGCCCTGAGAAATAAATAGTG--AAACTCT---TATAAAACAATATGATATTCATGCCGTCC----A--TT-GG-CAAGCGCGATATATCAAGCGTTTATATAT-AAAATCATGGGTATTGTCATGCCTTGCAAAGATTACAGTTATCTTTATTTGCATGATCAGAATTGATA---TTAACACTGACCAAACA-TTTCATCAAATTAATAA-A-----GAGACA------TTCCACATACACCTATGGCAAT---TGATA--AT-AA--TTA-TTT--TTTTA---ACTTAATGTTGATGGTACAGTTACGTGagt
gi|8 : aATGTTACA--A-CAGA-TTTGTAT--GAGACATCTCTA-C-GGA-T---GGTACAATAA-AGT-ATGTGTT-G---TTC---TTCTTATTT--ATTGTTA------TTT-C-TT--TT--AATCAC-ATATCGGTGCGGTTAGTGTGAAGCA-ACCCACCTGCTTCCTT------TG-GTTTTCGACTTTA---CATT-TTCTTTGCTTTGTGAGGCCCTGAGAAATAAATAGTG--AAACGCT---TATA--------TGATGTTCATGCCGTTT----A--TT-GG-CAAGCGCGATACAACAAGGGTTTATATAT-AAAATCATTGGCTTTATT----------AAGATTACAGTTCTCTTTATTTGCATAATCAGAAGTGATA---TAAGCACTGATTAAATAGTTTTATCAAGTAGATTA-A-----GAGACA------TAACACA------AATGGCAAT---TTATAC-TT-AAATTCG--TT--TTTTC---ATTAAATATTGAT------GTAACtatatacatacatatattcacaacatttact
gi|9 : tTGTAACA--A-TAAC-TTTATAT--GTGACATCTCTA-C-G-GCT---GGTACAATTA-AGT-A-ATGAT-G---TTA---TTTTAATTT--ATTGTTTA----AGTT-C-TTGATT--AA---A-CTATTTGTGCGGTTACTGCGAAGCA-ACCCACCTGCTTCTTT------GG-TTTTTCGTCGTTA---CATT-CTTTTCGTTTTGTGAGGCCCTTAAAAATAAATAGTG--AAACGCT---TATAATTA----TGATGTTCATGCCGTCT----A--TT-GG-CAAGCACGATACATCAAGCGTTTATATAT-AAAATCATTGGAGTTATCATGACTTGTAAATATTACAGTTTTCTTTATTTGCATAATCAGAAGTGACA---TTAGCACTGACCAAATATTTTTATTAAGTAAATTA-A-----GAGACA------TGCCACA------TATGGCAAT---TTATATGATAAAAAT---TTT--TTTTT---AATAAATGTTGAT------GTTaccagtacgcattaaaacttatatga