lowQualScore : 1 11 2 11 222222222222222 2222222222 1111111111 1111111111 3333333333333333333333333333333333333333333333
lowQualScore : 4 1 6 3333 1 44 333 6 1 222 00 7777777777 3333 000000000000000 3333 1111111111 3333333333 5555555555 6666666666 1 1 8888888888888 5555555555555555555555555555555555555555555555 1
lowQualScore : . . . .... . .. ... . . ... .. .......... .... ............... .... .......... .......... .......... .......... . . ............. .............................................. .
lowQualScore : 4 6 5 4444 7 66 000 6 6 888 88 0000000000 4444 000000000000000 4444 0000000000 5555555555 0000000000 7777777777 2 5 5555555555555 5555555555555555555555555555555555555555555555 7
consensus : ACCACTAAATAAAAGATATTACTTCACTTGAAACTTGTGTTTTAGTTTTCTTTGTACGCGCGCA----TACTGTCCTTTTACA-ATGTTTTAC-ACTTT---T-TTT-ACAATGTTT---ACCGTAG----------GCCTA----T---------------A----CGTCACAT----------TG----------TTTC----------A----------ACTCGATAGCATTTTGCTGCAAGGTGACGGTCTATTTTTAGCAACTC-TGACATTTGATT-------------GA-----------A-----------GTA-------------GG-----G-TAAATTATAACACATCTCGCTACACACACACA
Reference ( gi|12 ) : ACCACTCAATAAAAGATATTACTTCACTTGAAACTTGTGTTTTAGTTTTCTCTGTACGCACGCA----TACTGTCCTTTTACA-ATGTTTTAC-CCTTT---TGTTT-ACAATGTTT---ACTATAG----------GCCTA----T---------------A----CGTCACAT----------TG----------TTTC----------A----------ACTCGATAGCATTTTGCTGCAAGGTGACGGTCTATTTTTAGCAACTC-TGACATTTGATT-------------GA-----------A-----------GTA-------------GA-----G-TAAATTATAACACATCTCGCTACACACACACA
gi|10 : ACCATTAAATAAAAGATATTACTTCACTTGAAACTTGTGTTTTAGACGTCTTTGTACGCATGCA----TACTGTCCTTTTACA-ATGTTTTAC-ACTTT---TTTTT-ACAATGTTT---ACCGTAG----------GCCTA----T---------------A----CGTCAAAT----------TG----------TTTC----------A----------ACTTGATAGCATTTTGCTTCAAGGTGACGGTCTATTTTTAGCAACTC-TGACATTTGATT-------------AA-----------A-----------GTA-------------GG-----G-TAAATTATAACACATTTCGCGACACACACACA
gi|11 : taatACCACTAAATAAAAGATATTACTTCACTTGAAACTTGTGTTTTAGTCTTTTTTGTATGCATGCA----TATTGTTCTTTTACA-ATGTTTTAC-ACTTT---T--TT-ACAATGTTT---ACCGTAG----------GCCTA----T---------------A----CGTCACAT----------TG----------TTTC----------A----------ACTTGATAGCATTTTGCTGCAAGGTGACAATCTATTTTTAGCAACTC-TGACATTTGATT-------------AA-----------A-----------GTA-------------GG-----G-TCAATTATAACACATCTAGCTACACACACA
gi|5 : tgatACCATTAAATAAAAGATATTACTTCAATTGAAACTTATGTTGTAGTTTTCTTTGTACGCACGCA----TATTGTCCTTTTACA-AAGTTATAC-ACTTT---T-TTT-AAAATGTTT---ACCATAG----------GCCTA----T---------------A----CATCACAT----------TG----------TTTT----------A----------ACTCGATAGCATTTTGCTTCAAGGTGACGGTCTTTTTTTAGCAACTC-TGACATTTCATT-------------GA-----------T-----------ATA-------------CA-----A-TAAATTATAACACATCTCGCTACACACACACtg
gi|8 : aaatACCACTAAATAAAAGATATTACTTCACTTGAAACTTGTGTTTTAGTTTTCTTTGGGCGCACGCA----TACTGTCCTTTTACA-ATG-TTTAC-ACTTT-----TTT-AAAATGTTT---ACTGTAG----------GCCTA----T---------------G----CGTCACAT----------TG----------TTTC----------A----------ACTCGATAGAATTTTGCTGCAAGGTGA-GGCATATTTTTAGCAACTC-AGATATTTGATT-------------GA-----------AATACACGC---GCA-------------GG-----G-TAAATTACAACACATCTCGCTACACACACAgtctatgagcggatg
gi|20 : aaatACCACTAAATAAAAGATATTACTTCACTTGAAACTTGTGTTTTAGTTTTCTTTGTACGCACGCA----TACTGTACTTTTACA-AGGTTTTAC-ACTTT---TTTTT-ACAATATTT---ACCGTAG----------GCCTA----T---------------T----CGTCACAT----------TG----------TTTC----------A----------ACTCGATAGCATTTTGCTGCAAGGTGACGGTCTATTTTTAGCAACTC-TGACATTTGATT-------------GA-----------A-----------GTA-------------GA-----
gi|14 : aaatACCACTAAATAAAAGATATTACTTCACTTGAAACTTGTGTTTTAGTTTTCTTTGTACGCGTGCA----TACTTTCCCTTTACA-ATGTTTTAC-ACTTTCTTTTTTT-ACAATGGAT---ACCGTAG----------GCCTA----T---------------A----CATTACAT----------TG----------TTTC----------A----------ACTCGATAGCATTTTGCTGCAAGGTGACGGTCTATTTTTAGCAACTC-TGACATTTGATT-------------GA-----------A-----------ATA--------------------------------CACATCTCGCTACACAAACACA
gi|13 : aaatACCACTATATAAAAGATATTACATCACTTGAAACTTGTGTTTTAGTTTTCTGTGTACGCACGCA----TACTGTCCCTTTACA-ATGTTTTAC-ACTTT---T---------TGTTT---ACCGTAG----------GCCTA----T---------------AGACATGTCACAT----------TG----------TTTC----------A----------ACTTGATAGCATTTTGCTGCAAGGTGACGGTCTATTTTTAGCAACTC-TGACATTTGATT-------------GA-----------A-----------ATA--------------------------------CACATCTCGCTAAACACACACAcg
gi|15 : aaaaaatACCACTAAATAAAAGATATTACTTCACTAGAAACTTATGTTGTAGTTTTCTTTGTACGCATGCA----TACTGTCCTTTTACA-ATGTTTTAC-AGTTT---TTTTT-ACAATGTTT---ACCGTAA----------GCCTG----T---------------A----CGCCACAT----------TG----------TTTC----------A----------ACTCAATAGCATTTTGCTGCAAGGTG-----------------ACTT-CGACATTTGATC-------------GA-----------A-----------ATA-------------CA-----A-TAAATTATAATACATCTCGCTACACACACACcacacg
gi|3 : aaaaatACCACTATATAAACGAAATTACTTCACTAGAAACTTTTGTTTTAGTTTTCTTTGTACGCGTGCA----TACTGTCCCTTTACA-ATGTTTTACACTTTT---TTTTT-ACAATGTTT---ACCGTAG----------GTCTA----T---------------A----CATTACAT----------TG----------TTTCAAACTGTTTTA----------ACTCGATAGCATTTAGCTACAAGGTGACAGTCTATTTTTAATACCTC-TGACATTTAATT-------------G----------------------------------------------------------ACACATACAGCTACACACACACAggagc
gi|1 : ACCACTAAATAAAAGATATTACCTCACTAGAAACTTGTGTTTTAGTTTTCTTTGTATGCGCACA----TACTGTCC-CTTACA-ATGTTTTAC-ACATT---T-TTT-ACAATGTTG---AGCATAG----------CTCTA----T---------------A----TGTCACATTGTTTCAAACTG----------TTTC----------A----------ACTTGATAGCATTTAGCTAGAAGGTGA--GTC------TAGTACCTC-TGACATTTGATTGAAATATACACGCGA-----------A-----------GTG-------------GG-----G-TAAATTATAACACATCTTACTTCACACACACcacacacacatctatcagcggatggacat
gi|21 : aaatACCACTAAATAAATGATATAACTTCACTTGAAACTTGTGTTTTAGT---------ACACACGCA----TACAGTCCTTCT----------------------------ACAATGTTT-----------------------------T---------------A----CGTCACAT----------TG----------TTTC----------A----------ACTCGATAGCATTTTGCTGCAAGGTGACAGTCTATTTTCAGCAACTA-TGACATTTGAT--------------GA-----------A-----------GTA-------------GA-----G-TAAATTAAAACACATCTCAATACACCCACACgtctatcagcggatggacg
gi|2 : aaaatACTACTAAATTAAAGATACTACTTGACTAGAAATGCGTGTCTTAATTTTCTTTGTACACGCACA----TACTGTCCCTTTACA------------CTTT---T-TT---CAATGTTT---ACCGTAG----------GTCTA----T---------------A----CGTGACAT----------TGTTTCAAACATTTTC----------A----------ACTCGATAGCGTTTAGGTACAAGGTGCCTG-CTATTTTTAGCA--CC-TGACATTTGCTT-------------GAAATACACACGCA-----------GTG-------------GT-----G-TAAATTATAATACATCTCGCTACACACACACAgt
gi|9 : CACTAAATAAAAGATATTACTTCACTTGAAACTTGTGTTTTAGTTTTCTTTGCACGCGCGCA----TACTGTCCTTTTACA-ATGTTTTAC-CCTTT---TTTTT-ACAATTTTT---ACCGTAA----------GACGA----T---------------A----CGTCACAT----------TG----------TTTC----------A----------ACTCGATAGCATTTTGCTGCAAGGTGAAGGTCTATTGTTTGTAACTC-TGACATTGGATT-------------GA-----------A-----------GTA-------------GA-----G-TAAATTATAACACATCTTGCTACACACACAtgtctatatgagcggatggacgt
gi|28 : aaaataaCACTAAATAAAA--TATTACTTCACTAGAAACTTGTTTTTTCGTTTTCCTTGTACACACTCT----TACTGTCCTTtg
gi|4 : aaaacaaTTAATAAAATATATTACTTCACTAGAAACTTGTGTTTTAGTTTTCTTCGTACGCGCGCG----TTATGTCCCTTTACA-ATGTTTTAC-ACTTT---T-TTA-ACAATTTTT---ACCGTAG----------GTCTA----T---------------A----CGTCACATTATTTCTACCTG----------TTTC----------A----------ACTCGATAGCATTTAGCTATAAGGTGACGGTCTA-TTTTAGTACCTCTTGACATTT------------------A-----------A-----------GTG-------------GG-----G-TAAATTATAACACATATCGCTACACACACaatca
gi|23 : accgAATATAAGTTATTACTTCACTAGAAACTTGTGTTGTAGTTTTCTTTGTATGCACGCA----TACTGTCCTTTTACA-ATGTTTTAC-ACTTA---T-TTT-ACAATGTTA---ACCATAG----------A--TA----T---------------A----CGTCACAT----------TG----------TTTC----------A----------ACTCGATAGCATATTGCTGCAAGGTGACATTCTATTTTTAGCAACTC-TGACATTTGATT-------------tctattatcagcggatggacgt
gi|29 : taAGATATTACTTCACTAGAAACTTGTGTTTTAGTTTTCTTTGTATGCGCGGA----AACTGT
gi|22 : ATATTAATTCACTTGAAACTTGTGTTTTAGTTTTCTTTGAACGCACGCA----TACTGTCCTTTTACA-ATGTTTTAC-ACTTT---T-TTT-ACAATGTTT---ACCATAG----------GCCGA----T---------------A----CGTCACAT----------TG----------TTTC----------A----------AATCAATAGCAGTTTGCTGCAA------GGTCTATTTTTAGCAACTC-TGACATTTG---------------------------------------------------------------------ATTATAACACGTCTCGCTACACACACA
gi|17 : TATTACTTCACTTGAAACTTGTGTTTTAGTTTTCTTTGTACGCACACA----TACTGTCCTTTTACA-ATGTTTTAC-ACTTT---TTTTT-ACAATGTTT---ACCGTAG----------GCCTA----T---------------A----CGTCACAT----------TG----------TTTC----------A----------ACTCGATAGCATTTTGCTGCAAGGTGACGGTCTATTTTTAGCAACTC-TGACATTTGATT-------------GA-----------A-----------GTA-------------GA-----G-TAAATTATAACACATATCGCTACACACACAC
gi|19 : TATTACTTCACTTGAAACTTGTGTTTTAGTTTTCTTTGTACGCACACA----TACTGTCCTTTTACA-ATGTTTTAC-ACTTT---T-TTT-ACAATGTTT---ACCGTAG----------GCCTA----T---------------A----CGTCACAT----------TG----------TTTC----------A----------ACTCGATAGCATTTTGCTGCAAGGTGACGGTCTATTTTTAGCAACTC-TGACATTTGATT-------------GA-----------A-----------GTA-------------GA-----G-TAAATTATAACACATATCGCTACACACACACg
gi|24 : ACTTCACTTGAAACTTGTGTTTTAGTTTTC--------------------------TTTTACA-ATGCTTTAC-ACTTA---T-TTT-ACAATGTTT---ACCGTAG----------GCCTA----C---------------A----TGTCACAT----------TG----------TTAC----------A----------ACTCGATAGCATTTTGCTGCAAGGTGACGGTCTATTTTTAGCAACTG-TGACGTTTG---------------------------------------------------------------------ATTATAACACATCTCGCTGCACACACACAg
gi|7 : CTAGAAACATGTGTTTTAGTTTTCTTTGTATGCATGCA----TACTGTCTTTTTACA-ATGTTTTAC-ACTTT---T-TTT-ACAATGTTT---ACCGTAT----------GCCTA----T---------------A----CGTCATATTGTTTCAAACTG----------TTTC----------A----------ACTCGATAGCATTTTGCTACAAGGTGACAGTCTATTTTTAGCA--CC-TGACATTTGACT-------------GA-----------A-----------ATACACGCGCAGT---GG-----GTTAAATTATAACACATCTCGCTACACAAACGCAcgt
gi|16 : TTGTGTTTTAGTTTTCTTTGTACGCGCGCA----TACTGTCCCTTTACA-GTGTTTTAC-ACTTG---TAATC-ACATTGTTT---G--------------------------------------------------AAAC----------TG----------TTTC----------A----------ACTCAATAGCAATTAGTTACAAGGTGACGGTCTATTTTTAGTACCTC-TAATATTTGACT-------------GA-----------A-----------GTATACACGTACAGTGGG-----G-TAAATTACAACACACCTCGCTGCACACACACAcctctaggagcagatgaaca
gi|6 : TTCAGTTTTCTCTGTATACACACAATCATACTGTCCTTTCATA--TGTTTAAC-A---T---AGTTTTACAATGTTTGTAACCGTAGCCTGTTCTTGGCATAAAATT---------------A----CGTCGCAT----------TG----------TTTC----------AAACTGTTTGTACTCGATGACATTTTGCTACAAGTAAACGGTCTATTTTTAGCACCTC-TGACATTTGATA-------------GA-----------A-------------A-------------GACATACG-CAGATTATAACACATTTCCTTACACACATATAcacgtctatcagcggatggacgt
gi|18 : GCGCGCA----TACTGTCCGT--ACACATGTAT-AC-ACTTT---T-TTT-ACAATGTGT---ACCGTAG----------GCCTA----TTTTTAGCGTAAAAACA----CGTCACAT----------TGGTTTAAACTGTTTC----------C----------ACTCGATAACATATTGCTACAAGGTAACGGTCT----------------GACATTTGATT-------------GA-----------AATACACACACAGTA-------------GG-----G-TAAATTATAACACATCTTGCTACACACATACAcatgtttatgagcggaatgacg
gi|26 : tTTT-ACAATGTTT---ACCCTAG----------GTCTA----TTCTTAGCGTAAAAATA----TGTTGCAT----------TG----------TTTCA---------A----------ACTTGATA----------ACAAGGTGATTATCTACTTTAAACACCTC-TGACATTTGATT-------------GA-----------A-----------ATA-------------agtttatgagcggatggccgt
gi|25 : gt-ACAATATAT---ACCGTAC----------GCGTA----T---------------A----CATCACAT----------GG----------TTTCAAACTTTTTCA----------ACTCAATAGCATTTTGCTGCAAGGTTACGATCTATTTTTAGCAACTC-GGACATTTGATT-------------GAAATACACACACA-----------GTA-------------GG-----G-TAAATTATTACACATCTCACTAcacaggcagaatgcagaaat
gi|27 : G----------TTTC----------A----------ACTCGATAGCATTTTGCTGCAAGGTGATGGTCTATTTTTAGCAACTC-TGACATTTGATT-------------GA-----------A-----------GTA-------------GA-----G-TAAATTATAGCACATCTCGCTACACACACAC
Alignments
lowQualScore : 2222222222 1111111111 1111111111 3333333333333333333333333333333333333333333333
lowQualScore : 1 0 3333 1 1 22 3333 9 222 6666666666 3333 999999999999999 3333 0000000000 3333333333 8888888888 3333333333 0 1 8888888888888 2222222222222222222222222222222222222222222222 1
lowQualScore : . . .... . . .. .... . ... .......... .... ............... .... .......... .......... .......... .......... . . ............. .............................................. .
lowQualScore : 2 8 3333 6 6 22 4444 6 777 7777777777 3333 666666666666666 3333 2222222222 0000000000 0000000000 0000000000 9 5 1111111111111 2222222222222222222222222222222222222222222222 7
consensus : ACCACTAAATAAAAGATATTACTTCACTTGAAACTTGTGTTTTAGTTTTCTTTGTACGCGCGCA----TACTGTCCTTTTACA-ATGTTTTACA-C--TTT----T-TTTACAATGTTT---ACCGTAG----------GCCTA----T---------------A----CGTCACAT----------TG----------TTTC----------AA----------CTCGATAGCATTTTGCTGCAAGGTGACGGTCTATTTTTAGCAACTC-TGACATTTGATT-------------GA-----------A-----------GTA-------------GG-----G-TAAATTATAACACATCTCGCTACACACACACA
Reference ( family-293 ) : ACCACTAAATAAAAGATATTACTTCACTTGAAACTTGTGTTTTAGTTTTCTTTGTACGCGCGCA----TACTGTCCTTTTACA-ATGTTTTACA-C--TTT----T-TTTACAATGTTT---ACCGTAG----------GCCTA----T---------------A----CGTCACAT----------TG----------TTTC----------AA----------CTCGATAGCATTTTGCTGCAAGGTGACGGTCTATTTTTAGCAACTC-TGACATTTGATT-------------GA-----------A-----------GTA-------------GG-----G-TAAATTATAACACATCTCGCTACACACACACA
gi|1 : ACCACTAAATAAAAGATATTACCTCACTAGAAACTTGTGTTTTAGTTTTCTTTGTATGCGCACA----TACTGTCC-CTTACA-ATGTTTTACA-C--ATT----T-TTTACAATGTTG---AGCATAG----------CTCTA----T---------------A----TGTCACATTGTTTCAAACTG----------TTTC----------AA----------CTTGATAGCATTTAGCTAGAAGGTGA--GTC------TAGTACCTC-TGACATTTGATTGAAATATACACGCGA-----------A-----------GTG-------------GG-----G-TAAATTATAACACATCTTACTTCACACACAC
gi|10 : aaatACCATTAAATAAAAGATATTACTTCACTTGAAACTTGTGTTTTAGACGTCTTTGTACGCATGCA----TACTGTCCTTTTACA-ATGTTTTACA-C--TTT----TTTTTACAATGTTT---ACCGTAG----------GCCTA----T---------------A----CGTCAAAT----------TG----------TTTC----------AA----------CTTGATAGCATTTTGCTTCAAGGTGACGGTCTATTTTTAGCAACTC-TGACATTTGATT-------------AA-----------A-----------GTA-------------GG-----G-TAAATTATAACACATTTCGCGACACACACACAgtctatcagcggatggacg
gi|11 : taatACCACTAAATAAAAGATATTACTTCACTTGAAACTTGTGTTTTAGTCTTTTTTGTATGCATGCA----TATTGTTCTTTTACA-ATGTTTTACA-C--TTT----T--TTACAATGTTT---ACCGTAG----------GCCTA----T---------------A----CGTCACAT----------TG----------TTTC----------AA----------CTTGATAGCATTTTGCTGCAAGGTGACAATCTATTTTTAGCAACTC-TGACATTTGATT-------------AA-----------A-----------GTA-------------GG-----G-TCAATTATAACACATCTAGCTACACACACA
gi|12 : tgatACCACTCAATAAAAGATATTACTTCACTTGAAACTTGTGTTTTAGTTTTCTCTGTACGCACGCA----TACTGTCCTTTTACA-ATGTTTTACC-C--TTT----TGTTTACAATGTTT---ACTATAG----------GCCTA----T---------------A----CGTCACAT----------TG----------TTTC----------AA----------CTCGATAGCATTTTGCTGCAAGGTGACGGTCTATTTTTAGCAACTC-TGACATTTGATT-------------GA-----------A-----------GTA-------------GA-----G-TAAATTATAACACATCTCGCTACACACACACAtg
gi|13 : ACCACTATATAAAAGATATTACATCACTTGAAACTTGTGTTTTAGTTTTCTGTGTACGCACGCA----TACTGTCCCTTTACA-ATGTTTTACA-C--TTT----T-T-------GTTT---ACCGTAG----------GCCTA----T---------------AGACATGTCACAT----------TG----------TTTC----------AA----------CTTGATAGCATTTTGCTGCAAGGTGACGGTCTATTTTTAGCAACTC-TGACATTTGATT-------------GA-----------A-----------ATA--------------------------------CACATCTCGCTAAACACACACA
gi|14 : aaaaaatACCACTAAATAAAAGATATTACTTCACTTGAAACTTGTGTTTTAGTTTTCTTTGTACGCGTGCA----TACTTTCCCTTTACA-ATGTTTTACA-C--TTTCTTTT-TTTACAATGGAT---ACCGTAG----------GCCTA----T---------------A----CATTACAT----------TG----------TTTC----------AA----------CTCGATAGCATTTTGCTGCAAGGTGACGGTCTATTTTTAGCAACTC-TGACATTTGATT-------------GA-----------A-----------ATA--------------------------------CACATCTCGCTACACAAACACAcacacg
gi|15 : aaatACCACTAAATAAAAGATATTACTTCACTAGAAACTTATGTTGTAGTTTTCTTTGTACGCATGCA----TACTGTCCTTTTACA-ATGTTTTACAGT--TTT----T-TTTACAATGTTT---ACCGTAA----------GCCTG----T---------------A----CGCCACAT----------TG----------TTTC----------AA----------CTCAATAGCATTTTGCTGCAAGGTG-----------------ACTT-CGACATTTGATC-------------GA-----------A-----------ATA-------------CA-----A-TAAATTATAATACATCTCGCTACACACACACcg
gi|16 : aaaaatTTGTGTTTTAGTTTTCTTTGTACGCGCGCA----TACTGTCCCTTTACA-GTGTTTTACA-C--TTG----TAATCACATTGTTT---G--------------------------------------------------AAAC----------TG----------TTTC----------AA----------CTCAATAGCAATTAGTTACAAGGTGACGGTCTATTTTTAGTACCTC-TAATATTTGACT-------------GA-----------A-----------GTATACACGTACAGTGGG-----G-TAAATTACAACACACCTCGCTGCACACACACAggagc
gi|17 : TATTACTTCACTTGAAACTTGTGTTTTAGTTTTCTTTGTACGCACACA----TACTGTCCTTTTACA-ATGTTTTACA-C--TTT----TTTTTACAATGTTT---ACCGTAG----------GCCTA----T---------------A----CGTCACAT----------TG----------TTTC----------AA----------CTCGATAGCATTTTGCTGCAAGGTGACGGTCTATTTTTAGCAACTC-TGACATTTGATT-------------GA-----------A-----------GTA-------------GA-----G-TAAATTATAACACATATCGCTACACACACACcacgtctatcagcggatggacgt
gi|18 : GCGCGCA----TACTGTCCGT--ACACATGTAT-ACA-C--TTT----T-TTTACAATGTGT---ACCGTAG----------GCCTA----TTTTTAGCGTAAAAACA----CGTCACAT----------TGGTTTAAACTGTTTC----------CA----------CTCGATAACATATTGCTACAAGGTAACGGTCT----------------GACATTTGATT-------------GA-----------AATACACACACAGTA-------------GG-----G-TAAATTATAACACATCTTGCTACACACATACAg
gi|19 : tTATTACTTCACTTGAAACTTGTGTTTTAGTTTTCTTTGTACGCACACA----TACTGTCCTTTTACA-ATGTTTTACA-C--TTT----T-TTTACAATGTTT---ACCGTAG----------GCCTA----T---------------A----CGTCACAT----------TG----------TTTC----------AA----------CTCGATAGCATTTTGCTGCAAGGTGACGGTCTATTTTTAGCAACTC-TGACATTTGATT-------------GA-----------A-----------GTA-------------GA-----G-TAAATTATAACACATATCGCTACACACACACagtttatgagcggatggccgt
gi|2 : ACTACTAAATTAAAGATACTACTTGACTAGAAATGCGTGTCTTAATTTTCTTTGTACACGCACA----TACTGTCC-----------CTTTACA-C--TTT----T-TT--CAATGTTT---ACCGTAG----------GTCTA----T---------------A----CGTGACAT----------TGTTTCAAACATTTTC----------AA----------CTCGATAGCGTTTAGGTACAAGGTGCCTG-CTATTTTTAGCA--CC-TGACATTTGCTT-------------GA-----------A-----------ATACACACGCAGT---GGT----G-TAAATTATAATACATCTCGCTACACACACACAg
gi|20 : ACCACTAAATAAAAGATATTACTTCACTTGAAACTTGTGTTTTAGTTTTCTTTGTACGCACGCA----TACTGTACTTTTACA-AGGTTTTACA-C--TTT----TTTTTACAATATTT---ACCGTAG----------GCCTA----T---------------T----CGTCACAT----------TG----------TTTC----------AA----------CTCGATAGCATTTTGCTGCAAGGTGACGGTCTATTTTTAGCAACTC-TGACATTTGATT-------------GA-----------A-----------GTA-------------Gtgtctatatgagcggatggacgt
gi|21 : aaatACCACTAAATAAATGATATAACTTCACTTGAAACTTGTGTTTTAGT---------ACACACGCA----TACAGTCCTTCTACA------------------------------ATGTTT-----------------------------T---------------A----CGTCACAT----------TG----------TTTC----------AA----------CTCGATAGCATTTTGCTGCAAGGTGACAGTCTATTTTCAGCAACTA-TGACATTTGA-T-------------GA-----------A-----------GTA-------------GA-----G-TAAATTAAAACACATCTCAATACACCCACACa
gi|22 : aaaatATATTAATTCACTTGAAACTTGTGTTTTAGTTTTCTTTGAACGCACGCA----TACTGTCCTTTTACA-ATGTTTTACA-C--TTT----T-TTTACAATGTTT---ACCATAG----------GCCGA----T---------------A----CGTCACAT----------TG----------TTTC----------AA----------ATCAATAGCAGTTTGCTGCAA------GGTCTATTTTTAGCAACTC-TGACATTTG---------------------------------------------------------------------ATTATAACACGTCTCGCTACACACACAgt
gi|23 : TAAATATAAGTTATTACTTCACTAGAAACTTGTGTTGTAGTTTTCTTTGTATGCACGCA----TACTGTCCTTTTACA-ATGTTTTACA-C--TTA----T-TTTACAATGTTA---ACCATAG----------A--TA----T---------------A----CGTCACAT----------TG----------TTTC----------AA----------CTCGATAGCATATTGCTGCAAGGTGACATTCTATTTTTAGCAACTC-TGACATTTGATT-------------
gi|24 : ACTTCACTTGAAACTTGTGTTTTAGTTTTCTTT--------------------------TACA-ATGCTTTACA-C--TTA----T-TTTACAATGTTT---ACCGTAG----------GCCTA----C---------------A----TGTCACAT----------TG----------TTAC----------AA----------CTCGATAGCATTTTGCTGCAAGGTGACGGTCTATTTTTAGCAACTG-TGACGTTTG---------------------------------------------------------------------ATTATAACACATCTCGCTGCACACACACA
gi|25 : ACAATATAT---ACCGTAC----------GCGTA----T---------------A----CATCACAT----------GG----------TTTC----------AAACTTTTTCAACTCAATAGCATTTTGCTGCAAGGTTACGATCTATTTTTAGCAACTC-GGACATTTGATT-------------GAAATACACACACA-----------GTA-------------GG-----G-TAAATTATTACACATCTCACTAcgt
gi|26 : TTTTACA-ATG-TTTACC-C--TAG----G-TCT---ATTCTT---AGCGTAA----------AA--A----T---------------A----TGTTGCAT----------TG----------TTTCA---------AA----------CTTGATA----------ACAAGGTGATTATCTACTTTAAACACCTC-TGACATTTGATT-------------GA-----------A-----------ATA-------------
gi|27 : gG----------TTTC----------AA----------CTCGATAGCATTTTGCTGCAAGGTGATGGTCTATTTTTAGCAACTC-TGACATTTGATT-------------GA-----------A-----------GTA-------------GA-----G-TAAATTATAGCACATCTCGCTACACACACACcacaggcagaatgcagaaat
gi|28 : CACTAAATAAAA--TATTACTTCACTAGAAACTTGTTTTTTCGTTTTCCTTGTACACACTCT----TACTGTCCTTgt
gi|29 : aaaacaaAGATATTACTTCACTAGAAACTTGTGTTTTAGTTTTCTTTGTATGCGCGGA----AACTGTaatca
gi|3 : ACCACTATATAAACGAAATTACTTCACTAGAAACTTTTGTTTTAGTTTTCTTTGTACGCGTGCA----TACTGTCCCTTTACA-ATGTTTTACA-CTTTTT----T-TTTACAATGTTT---ACCGTAG----------GTCTA----T---------------A----CATTACAT----------TG----------TTTCAAACTGTTTTAA----------CTCGATAGCATTTAGCTACAAGGTGACAGTCTATTTTTAATACCTC-TGACATTTAATT-------------G----------------------------------------------------------ACACATACAGCTACACACACACA
gi|4 : ACCGTTAA-TAAAATATATTACTTCACTAGAAACTTGTGTTTTAGTTTTCTTCGTACGCGCGCG----TTATGTCCCTTTACA-ATGTTTTACA-C--TTT----T-TTAACAATTTTT---ACCGTAG----------GTCTA----T---------------A----CGTCACATTATTTCTACCTG----------TTTC----------AA----------CTCGATAGCATTTAGCTATAAGGTGACGGTCTA-TTTTAGTACCTCTTGACATTT------------------A-----------A-----------GTG-------------GG-----G-TAAATTATAACACATATCGCTACACACACcacacacacatctatcagcggatggacat
gi|5 : ACCATTAAATAAAAGATATTACTTCAATTGAAACTTATGTTGTAGTTTTCTTTGTACGCACGCA----TATTGTCCTTTTACA-AAGTTATACA-C--TTT----T-TTTAAAATGTTT---ACCATAG----------GCCTA----T---------------A----CATCACAT----------TG----------TTTT----------AA----------CTCGATAGCATTTTGCTTCAAGGTGACGGTCTTTTTTTAGCAACTC-TGACATTTCATT-------------GA-----------T-----------ATA-------------CA-----A-TAAATTATAACACATCTCGCTACACACACACtctattatcagcggatggacgt
gi|6 : aaatTTCAGTTTTCTCTGTATACACACAATCATACTGTCCTTTCATA--TGTTTAACA----TAG----T-TTTACAATGTTTGTAACCGTAGCCTGTTCTTGGCATAAAATT---------------A----CGTCGCAT----------TG----------TTTC----------AAACTGTTTGTACTCGATGACATTTTGCTACAAGTAAACGGTCTATTTTTAGCACCTC-TGACATTTGATA-------------GA-----------A-------------A-------------GACATACG-CAGATTATAACACATTTCCTTACACACATATAgtctatgagcggatg
gi|7 : CTAGAAACATGTGTTTTAGTTTTCTTTGTATGCATGCA----TACTGTCTTTTTACA-ATGTTTTACA-C--TTT----T-TTTACAATGTTT---ACCGTAT----------GCCTA----T---------------A----CGTCATATTGTTTCAAACTG----------TTTC----------AA----------CTCGATAGCATTTTGCTACAAGGTGACAGTCTATTTTTAGCA--CC-TGACATTTGACT-------------GA-----------A-----------ATACACGCGCAGT---GG-----GTTAAATTATAACACATCTCGCTACACAAACGCAcatgtttatgagcggaatgacg
gi|8 : ACCACTAAATAAAAGATATTACTTCACTTGAAACTTGTGTTTTAGTTTTCTTTGGGCGCACGCA----TACTGTCCTTTTACA-ATG-TTTACA-C---TT----T-TTTAAAATGTTT---ACTGTAG----------GCCTA----T---------------G----CGTCACAT----------TG----------TTTC----------AA----------CTCGATAGAATTTTGCTGCAAGGTGA-GGCATATTTTTAGCAACTC-AGATATTTGATT-------------GA-----------AATACACGC---GCA-------------GG-----G-TAAATTACAACACATCTCGCTACACACACAcctctaggagcagatgaaca
gi|9 : aaatCACTAAATAAAAGATATTACTTCACTTGAAACTTGTGTTTTAGTTTTCTTTGCACGCGCGCA----TACTGTCCTTTTACA-ATGTTTTACC-C--TTT----TTTTTACAATTTTT---ACCGTAA----------GACGA----T---------------A----CGTCACAT----------TG----------TTTC----------AA----------CTCGATAGCATTTTGCTGCAAGGTGAAGGTCTATTGTTTGTAACTC-TGACATTGGATT-------------GA-----------A-----------GTA-------------GA-----G-TAAATTATAACACATCTTGCTACACACACA
Alignments
lowQualScore : 2222222222 1111111111 1111111111 3333333333333333333333333333333333333333333333
lowQualScore : 1 0 3333 1 1 22 3333 9 222 6666666666 3333 999999999999999 3333 0000000000 3333333333 8888888888 3333333333 0 1 8888888888888 2222222222222222222222222222222222222222222222 1
lowQualScore : . . .... . . .. .... . ... .......... .... ............... .... .......... .......... .......... .......... . . ............. .............................................. .
lowQualScore : 2 8 3333 6 6 22 4444 6 777 7777777777 3333 666666666666666 3333 2222222222 0000000000 0000000000 0000000000 9 5 1111111111111 2222222222222222222222222222222222222222222222 7
consensus : ACCACTAAATAAAAGATATTACTTCACTTGAAACTTGTGTTTTAGTTTTCTTTGTACGCGCGCA----TACTGTCCTTTTACA-ATGTTTTACA-C--TTT----T-TTTACAATGTTT---ACCGTAG----------GCCTA----T---------------A----CGTCACAT----------TG----------TTTC----------AA----------CTCGATAGCATTTTGCTGCAAGGTGACGGTCTATTTTTAGCAACTC-TGACATTTGATT-------------GA-----------A-----------GTA-------------GG-----G-TAAATTATAACACATCTCGCTACACACACACA
Reference ( family-293 ) : ACCACTAAATAAAAGATATTACTTCACTTGAAACTTGTGTTTTAGTTTTCTTTGTACGCGCGCA----TACTGTCCTTTTACA-ATGTTTTACA-C--TTT----T-TTTACAATGTTT---ACCGTAG----------GCCTA----T---------------A----CGTCACAT----------TG----------TTTC----------AA----------CTCGATAGCATTTTGCTGCAAGGTGACGGTCTATTTTTAGCAACTC-TGACATTTGATT-------------GA-----------A-----------GTA-------------GG-----G-TAAATTATAACACATCTCGCTACACACACACA
gi|1 : ACCACTAAATAAAAGATATTACCTCACTAGAAACTTGTGTTTTAGTTTTCTTTGTATGCGCACA----TACTGTCC-CTTACA-ATGTTTTACA-C--ATT----T-TTTACAATGTTG---AGCATAG----------CTCTA----T---------------A----TGTCACATTGTTTCAAACTG----------TTTC----------AA----------CTTGATAGCATTTAGCTAGAAGGTGA--GTC------TAGTACCTC-TGACATTTGATTGAAATATACACGCGA-----------A-----------GTG-------------GG-----G-TAAATTATAACACATCTTACTTCACACACAC
gi|10 : aaatACCATTAAATAAAAGATATTACTTCACTTGAAACTTGTGTTTTAGACGTCTTTGTACGCATGCA----TACTGTCCTTTTACA-ATGTTTTACA-C--TTT----TTTTTACAATGTTT---ACCGTAG----------GCCTA----T---------------A----CGTCAAAT----------TG----------TTTC----------AA----------CTTGATAGCATTTTGCTTCAAGGTGACGGTCTATTTTTAGCAACTC-TGACATTTGATT-------------AA-----------A-----------GTA-------------GG-----G-TAAATTATAACACATTTCGCGACACACACACAgtctatcagcggatggacg
gi|11 : taatACCACTAAATAAAAGATATTACTTCACTTGAAACTTGTGTTTTAGTCTTTTTTGTATGCATGCA----TATTGTTCTTTTACA-ATGTTTTACA-C--TTT----T--TTACAATGTTT---ACCGTAG----------GCCTA----T---------------A----CGTCACAT----------TG----------TTTC----------AA----------CTTGATAGCATTTTGCTGCAAGGTGACAATCTATTTTTAGCAACTC-TGACATTTGATT-------------AA-----------A-----------GTA-------------GG-----G-TCAATTATAACACATCTAGCTACACACACA
gi|12 : tgatACCACTCAATAAAAGATATTACTTCACTTGAAACTTGTGTTTTAGTTTTCTCTGTACGCACGCA----TACTGTCCTTTTACA-ATGTTTTACC-C--TTT----TGTTTACAATGTTT---ACTATAG----------GCCTA----T---------------A----CGTCACAT----------TG----------TTTC----------AA----------CTCGATAGCATTTTGCTGCAAGGTGACGGTCTATTTTTAGCAACTC-TGACATTTGATT-------------GA-----------A-----------GTA-------------GA-----G-TAAATTATAACACATCTCGCTACACACACACAtg
gi|13 : ACCACTATATAAAAGATATTACATCACTTGAAACTTGTGTTTTAGTTTTCTGTGTACGCACGCA----TACTGTCCCTTTACA-ATGTTTTACA-C--TTT----T-T-------GTTT---ACCGTAG----------GCCTA----T---------------AGACATGTCACAT----------TG----------TTTC----------AA----------CTTGATAGCATTTTGCTGCAAGGTGACGGTCTATTTTTAGCAACTC-TGACATTTGATT-------------GA-----------A-----------ATA--------------------------------CACATCTCGCTAAACACACACA
gi|14 : aaaaaatACCACTAAATAAAAGATATTACTTCACTTGAAACTTGTGTTTTAGTTTTCTTTGTACGCGTGCA----TACTTTCCCTTTACA-ATGTTTTACA-C--TTTCTTTT-TTTACAATGGAT---ACCGTAG----------GCCTA----T---------------A----CATTACAT----------TG----------TTTC----------AA----------CTCGATAGCATTTTGCTGCAAGGTGACGGTCTATTTTTAGCAACTC-TGACATTTGATT-------------GA-----------A-----------ATA--------------------------------CACATCTCGCTACACAAACACAcacacg
gi|15 : aaatACCACTAAATAAAAGATATTACTTCACTAGAAACTTATGTTGTAGTTTTCTTTGTACGCATGCA----TACTGTCCTTTTACA-ATGTTTTACAGT--TTT----T-TTTACAATGTTT---ACCGTAA----------GCCTG----T---------------A----CGCCACAT----------TG----------TTTC----------AA----------CTCAATAGCATTTTGCTGCAAGGTG-----------------ACTT-CGACATTTGATC-------------GA-----------A-----------ATA-------------CA-----A-TAAATTATAATACATCTCGCTACACACACACcg
gi|16 : aaaaatTTGTGTTTTAGTTTTCTTTGTACGCGCGCA----TACTGTCCCTTTACA-GTGTTTTACA-C--TTG----TAATCACATTGTTT---G--------------------------------------------------AAAC----------TG----------TTTC----------AA----------CTCAATAGCAATTAGTTACAAGGTGACGGTCTATTTTTAGTACCTC-TAATATTTGACT-------------GA-----------A-----------GTATACACGTACAGTGGG-----G-TAAATTACAACACACCTCGCTGCACACACACAggagc
gi|17 : TATTACTTCACTTGAAACTTGTGTTTTAGTTTTCTTTGTACGCACACA----TACTGTCCTTTTACA-ATGTTTTACA-C--TTT----TTTTTACAATGTTT---ACCGTAG----------GCCTA----T---------------A----CGTCACAT----------TG----------TTTC----------AA----------CTCGATAGCATTTTGCTGCAAGGTGACGGTCTATTTTTAGCAACTC-TGACATTTGATT-------------GA-----------A-----------GTA-------------GA-----G-TAAATTATAACACATATCGCTACACACACACcacgtctatcagcggatggacgt
gi|18 : GCGCGCA----TACTGTCCGT--ACACATGTAT-ACA-C--TTT----T-TTTACAATGTGT---ACCGTAG----------GCCTA----TTTTTAGCGTAAAAACA----CGTCACAT----------TGGTTTAAACTGTTTC----------CA----------CTCGATAACATATTGCTACAAGGTAACGGTCT----------------GACATTTGATT-------------GA-----------AATACACACACAGTA-------------GG-----G-TAAATTATAACACATCTTGCTACACACATACAg
gi|19 : tTATTACTTCACTTGAAACTTGTGTTTTAGTTTTCTTTGTACGCACACA----TACTGTCCTTTTACA-ATGTTTTACA-C--TTT----T-TTTACAATGTTT---ACCGTAG----------GCCTA----T---------------A----CGTCACAT----------TG----------TTTC----------AA----------CTCGATAGCATTTTGCTGCAAGGTGACGGTCTATTTTTAGCAACTC-TGACATTTGATT-------------GA-----------A-----------GTA-------------GA-----G-TAAATTATAACACATATCGCTACACACACACagtttatgagcggatggccgt
gi|2 : ACTACTAAATTAAAGATACTACTTGACTAGAAATGCGTGTCTTAATTTTCTTTGTACACGCACA----TACTGTCC-----------CTTTACA-C--TTT----T-TT--CAATGTTT---ACCGTAG----------GTCTA----T---------------A----CGTGACAT----------TGTTTCAAACATTTTC----------AA----------CTCGATAGCGTTTAGGTACAAGGTGCCTG-CTATTTTTAGCA--CC-TGACATTTGCTT-------------GA-----------A-----------ATACACACGCAGT---GGT----G-TAAATTATAATACATCTCGCTACACACACACAg
gi|20 : ACCACTAAATAAAAGATATTACTTCACTTGAAACTTGTGTTTTAGTTTTCTTTGTACGCACGCA----TACTGTACTTTTACA-AGGTTTTACA-C--TTT----TTTTTACAATATTT---ACCGTAG----------GCCTA----T---------------T----CGTCACAT----------TG----------TTTC----------AA----------CTCGATAGCATTTTGCTGCAAGGTGACGGTCTATTTTTAGCAACTC-TGACATTTGATT-------------GA-----------A-----------GTA-------------Gtgtctatatgagcggatggacgt
gi|21 : aaatACCACTAAATAAATGATATAACTTCACTTGAAACTTGTGTTTTAGT---------ACACACGCA----TACAGTCCTTCTACA------------------------------ATGTTT-----------------------------T---------------A----CGTCACAT----------TG----------TTTC----------AA----------CTCGATAGCATTTTGCTGCAAGGTGACAGTCTATTTTCAGCAACTA-TGACATTTGA-T-------------GA-----------A-----------GTA-------------GA-----G-TAAATTAAAACACATCTCAATACACCCACACa
gi|22 : aaaatATATTAATTCACTTGAAACTTGTGTTTTAGTTTTCTTTGAACGCACGCA----TACTGTCCTTTTACA-ATGTTTTACA-C--TTT----T-TTTACAATGTTT---ACCATAG----------GCCGA----T---------------A----CGTCACAT----------TG----------TTTC----------AA----------ATCAATAGCAGTTTGCTGCAA------GGTCTATTTTTAGCAACTC-TGACATTTG---------------------------------------------------------------------ATTATAACACGTCTCGCTACACACACAgt
gi|23 : TAAATATAAGTTATTACTTCACTAGAAACTTGTGTTGTAGTTTTCTTTGTATGCACGCA----TACTGTCCTTTTACA-ATGTTTTACA-C--TTA----T-TTTACAATGTTA---ACCATAG----------A--TA----T---------------A----CGTCACAT----------TG----------TTTC----------AA----------CTCGATAGCATATTGCTGCAAGGTGACATTCTATTTTTAGCAACTC-TGACATTTGATT-------------
gi|24 : ACTTCACTTGAAACTTGTGTTTTAGTTTTCTTT--------------------------TACA-ATGCTTTACA-C--TTA----T-TTTACAATGTTT---ACCGTAG----------GCCTA----C---------------A----TGTCACAT----------TG----------TTAC----------AA----------CTCGATAGCATTTTGCTGCAAGGTGACGGTCTATTTTTAGCAACTG-TGACGTTTG---------------------------------------------------------------------ATTATAACACATCTCGCTGCACACACACA
gi|25 : ACAATATAT---ACCGTAC----------GCGTA----T---------------A----CATCACAT----------GG----------TTTC----------AAACTTTTTCAACTCAATAGCATTTTGCTGCAAGGTTACGATCTATTTTTAGCAACTC-GGACATTTGATT-------------GAAATACACACACA-----------GTA-------------GG-----G-TAAATTATTACACATCTCACTAcgt
gi|26 : TTTTACA-ATG-TTTACC-C--TAG----G-TCT---ATTCTT---AGCGTAA----------AA--A----T---------------A----TGTTGCAT----------TG----------TTTCA---------AA----------CTTGATA----------ACAAGGTGATTATCTACTTTAAACACCTC-TGACATTTGATT-------------GA-----------A-----------ATA-------------
gi|27 : gG----------TTTC----------AA----------CTCGATAGCATTTTGCTGCAAGGTGATGGTCTATTTTTAGCAACTC-TGACATTTGATT-------------GA-----------A-----------GTA-------------GA-----G-TAAATTATAGCACATCTCGCTACACACACACcacaggcagaatgcagaaat
gi|28 : CACTAAATAAAA--TATTACTTCACTAGAAACTTGTTTTTTCGTTTTCCTTGTACACACTCT----TACTGTCCTTgt
gi|29 : aaaacaaAGATATTACTTCACTAGAAACTTGTGTTTTAGTTTTCTTTGTATGCGCGGA----AACTGTaatca
gi|3 : ACCACTATATAAACGAAATTACTTCACTAGAAACTTTTGTTTTAGTTTTCTTTGTACGCGTGCA----TACTGTCCCTTTACA-ATGTTTTACA-CTTTTT----T-TTTACAATGTTT---ACCGTAG----------GTCTA----T---------------A----CATTACAT----------TG----------TTTCAAACTGTTTTAA----------CTCGATAGCATTTAGCTACAAGGTGACAGTCTATTTTTAATACCTC-TGACATTTAATT-------------G----------------------------------------------------------ACACATACAGCTACACACACACA
gi|4 : ACCGTTAA-TAAAATATATTACTTCACTAGAAACTTGTGTTTTAGTTTTCTTCGTACGCGCGCG----TTATGTCCCTTTACA-ATGTTTTACA-C--TTT----T-TTAACAATTTTT---ACCGTAG----------GTCTA----T---------------A----CGTCACATTATTTCTACCTG----------TTTC----------AA----------CTCGATAGCATTTAGCTATAAGGTGACGGTCTA-TTTTAGTACCTCTTGACATTT------------------A-----------A-----------GTG-------------GG-----G-TAAATTATAACACATATCGCTACACACACcacacacacatctatcagcggatggacat
gi|5 : ACCATTAAATAAAAGATATTACTTCAATTGAAACTTATGTTGTAGTTTTCTTTGTACGCACGCA----TATTGTCCTTTTACA-AAGTTATACA-C--TTT----T-TTTAAAATGTTT---ACCATAG----------GCCTA----T---------------A----CATCACAT----------TG----------TTTT----------AA----------CTCGATAGCATTTTGCTTCAAGGTGACGGTCTTTTTTTAGCAACTC-TGACATTTCATT-------------GA-----------T-----------ATA-------------CA-----A-TAAATTATAACACATCTCGCTACACACACACtctattatcagcggatggacgt
gi|6 : aaatTTCAGTTTTCTCTGTATACACACAATCATACTGTCCTTTCATA--TGTTTAACA----TAG----T-TTTACAATGTTTGTAACCGTAGCCTGTTCTTGGCATAAAATT---------------A----CGTCGCAT----------TG----------TTTC----------AAACTGTTTGTACTCGATGACATTTTGCTACAAGTAAACGGTCTATTTTTAGCACCTC-TGACATTTGATA-------------GA-----------A-------------A-------------GACATACG-CAGATTATAACACATTTCCTTACACACATATAgtctatgagcggatg
gi|7 : CTAGAAACATGTGTTTTAGTTTTCTTTGTATGCATGCA----TACTGTCTTTTTACA-ATGTTTTACA-C--TTT----T-TTTACAATGTTT---ACCGTAT----------GCCTA----T---------------A----CGTCATATTGTTTCAAACTG----------TTTC----------AA----------CTCGATAGCATTTTGCTACAAGGTGACAGTCTATTTTTAGCA--CC-TGACATTTGACT-------------GA-----------A-----------ATACACGCGCAGT---GG-----GTTAAATTATAACACATCTCGCTACACAAACGCAcatgtttatgagcggaatgacg
gi|8 : ACCACTAAATAAAAGATATTACTTCACTTGAAACTTGTGTTTTAGTTTTCTTTGGGCGCACGCA----TACTGTCCTTTTACA-ATG-TTTACA-C---TT----T-TTTAAAATGTTT---ACTGTAG----------GCCTA----T---------------G----CGTCACAT----------TG----------TTTC----------AA----------CTCGATAGAATTTTGCTGCAAGGTGA-GGCATATTTTTAGCAACTC-AGATATTTGATT-------------GA-----------AATACACGC---GCA-------------GG-----G-TAAATTACAACACATCTCGCTACACACACAcctctaggagcagatgaaca
gi|9 : aaatCACTAAATAAAAGATATTACTTCACTTGAAACTTGTGTTTTAGTTTTCTTTGCACGCGCGCA----TACTGTCCTTTTACA-ATGTTTTACC-C--TTT----TTTTTACAATTTTT---ACCGTAA----------GACGA----T---------------A----CGTCACAT----------TG----------TTTC----------AA----------CTCGATAGCATTTTGCTGCAAGGTGAAGGTCTATTGTTTGTAACTC-TGACATTGGATT-------------GA-----------A-----------GTA-------------GA-----G-TAAATTATAACACATCTTGCTACACACACA
blockSeqs : T ATCA C G TT CTTT T GTA CCTGTTCTTG AAAT TTTTAGCGTAAAAAC GACA TATTTCTACC GTTTAAACTG AAACTGTTTT ACTTTTTCAA T . AGTATACACGTACAGTGGG T
blockSeqs : T . . . . . G . . . . . TGTTTCAAAC TTTCAAACAT A ACTGTTTGTA . . AATACACACACAGTAGG .
blockSeqs : T . . . . . A . . . . . . . . . . . AATACACACGCAGTGGT .
blockSeqs : T . . . . . T . . . . . . . . . . . AATACACACACAGTAGG .
blockSeqs : T . . . . . T . . . . . . . . . . . AATACACGCGCAGTGG .
blockSeqs : A . . . . . T . . . . . . . . . . . AATACACGCGCAGG .
blockSeqs : T . . . . . . . . . . . . . . . . . AAGACATAC .
blockSeqs : T . . . . . . . . . . . . . . . . . AGTAGG .
blockSeqs : A . . . . . . . . . . . . . . . . . AGTAGG .
blockSeqs : T . . . . . . . . . . . . . . . . . AGTAGA .
blockSeqs : T . . . . . . . . . . . . . . . . . AATACA .
blockSeqs : T . . . . . . . . . . . . . . . . . AGTAGA .
blockSeqs : A . . . . . . . . . . . . . . . . . AGTAGA .
blockSeqs : T . . . . . . . . . . . . . . . . . AGTAGA .
blockSeqs : A . . . . . . . . . . . . . . . . . AGTAGA .
blockSeqs : A . . . . . . . . . . . . . . . . . AGTGGG .
blockSeqs : A . . . . . . . . . . . . . . . . . TATACA .
blockSeqs : A . . . . . . . . . . . . . . . . . AGTAGA .
blockSeqs : T . . . . . . . . . . . . . . . . . AATA .
blockSeqs : A . . . . . . . . . . . . . . . . . AATA .
blockSeqs : T . . . . . . . . . . . . . . . . . . .
blockSeqs : T . . . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . .
blockSeqs : . . . . .
blockSeqCons : ********** *************
originalCons : ACCACTAAATAAAAGATATTACTTCACTTGAAACTTGTGTTTTAGTTTTCTTTGTACGCGCGCA----TACTGTCCTTTTACA-ATGTTTTACA-C--TTT----T-TTTACAATGTTT---ACCGTAG----------GCCTA----T---------------A----CGTCACAT----------TG----------TTTC----------AA----------CTCGATAGCATTTTGCTGCAAGGTGACGGTCTATTTTTAGCAACTC-TGACATTTGATT-------------GA-----------A-----------GTA-------------GG-----G-TAAATTATAACACATCTCGCTACACACACACA
finalCons : ACCACTAAATAAAAGATATTACTTCACTTGAAACTTGTGTTTTAGTTTTCTTTGTACGCGCGCA----TACTGTCCTTTTACA-ATGTTTTACA-C--TTT----T-TTTACAATGTTT---ACCGTAG----------GCCTA----T---------------A----CGTCACAT----------TG----------TTTC----------AA----------CTCGATAGCATTTTGCTGCAAGGTGACGGTCTATTTTTAGCAACTC-TGACATTTGATT-------------GA-----------A-----------GTA-------------GG-----G-TAAATTATAACACATCTCGCTACACACACACA
Alignments
lowQualScore : 2222222222 1111111111 1111111111 3333333333333333333333333333333333333333333333
lowQualScore : 1 0 3333 1 1 22 3333 9 222 6666666666 3333 999999999999999 3333 0000000000 3333333333 8888888888 3333333333 0 1 8888888888888 2222222222222222222222222222222222222222222222 1
lowQualScore : . . .... . . .. .... . ... .......... .... ............... .... .......... .......... .......... .......... . . ............. .............................................. .
lowQualScore : 2 8 3333 6 6 22 4444 6 777 7777777777 3333 666666666666666 3333 2222222222 0000000000 0000000000 0000000000 9 5 1111111111111 2222222222222222222222222222222222222222222222 7
consensus : ACCACTAAATAAAAGATATTACTTCACTTGAAACTTGTGTTTTAGTTTTCTTTGTACGCGCGCA----TACTGTCCTTTTACA-ATGTTTTACA-C--TTT----T-TTTACAATGTTT---ACCGTAG----------GCCTA----T---------------A----CGTCACAT----------TG----------TTTC----------AA----------CTCGATAGCATTTTGCTGCAAGGTGACGGTCTATTTTTAGCAACTC-TGACATTTGATT-------------GA-----------A-----------GTA-------------GG-----G-TAAATTATAACACATCTCGCTACACACACACA
Reference ( family-293 ) : ACCACTAAATAAAAGATATTACTTCACTTGAAACTTGTGTTTTAGTTTTCTTTGTACGCGCGCA----TACTGTCCTTTTACA-ATGTTTTACA-C--TTT----T-TTTACAATGTTT---ACCGTAG----------GCCTA----T---------------A----CGTCACAT----------TG----------TTTC----------AA----------CTCGATAGCATTTTGCTGCAAGGTGACGGTCTATTTTTAGCAACTC-TGACATTTGATT-------------GA-----------A-----------GTA-------------GG-----G-TAAATTATAACACATCTCGCTACACACACACA
gi|1 : ACCACTAAATAAAAGATATTACCTCACTAGAAACTTGTGTTTTAGTTTTCTTTGTATGCGCACA----TACTGTCC-CTTACA-ATGTTTTACA-C--ATT----T-TTTACAATGTTG---AGCATAG----------CTCTA----T---------------A----TGTCACATTGTTTCAAACTG----------TTTC----------AA----------CTTGATAGCATTTAGCTAGAAGGTGA--GTC------TAGTACCTC-TGACATTTGATTGAAATATACACGCGA-----------A-----------GTG-------------GG-----G-TAAATTATAACACATCTTACTTCACACACAC
gi|10 : aaatACCATTAAATAAAAGATATTACTTCACTTGAAACTTGTGTTTTAGACGTCTTTGTACGCATGCA----TACTGTCCTTTTACA-ATGTTTTACA-C--TTT----TTTTTACAATGTTT---ACCGTAG----------GCCTA----T---------------A----CGTCAAAT----------TG----------TTTC----------AA----------CTTGATAGCATTTTGCTTCAAGGTGACGGTCTATTTTTAGCAACTC-TGACATTTGATT-------------AA-----------A-----------GTA-------------GG-----G-TAAATTATAACACATTTCGCGACACACACACAgtctatcagcggatggacg
gi|11 : taatACCACTAAATAAAAGATATTACTTCACTTGAAACTTGTGTTTTAGTCTTTTTTGTATGCATGCA----TATTGTTCTTTTACA-ATGTTTTACA-C--TTT----T--TTACAATGTTT---ACCGTAG----------GCCTA----T---------------A----CGTCACAT----------TG----------TTTC----------AA----------CTTGATAGCATTTTGCTGCAAGGTGACAATCTATTTTTAGCAACTC-TGACATTTGATT-------------AA-----------A-----------GTA-------------GG-----G-TCAATTATAACACATCTAGCTACACACACA
gi|12 : tgatACCACTCAATAAAAGATATTACTTCACTTGAAACTTGTGTTTTAGTTTTCTCTGTACGCACGCA----TACTGTCCTTTTACA-ATGTTTTACC-C--TTT----TGTTTACAATGTTT---ACTATAG----------GCCTA----T---------------A----CGTCACAT----------TG----------TTTC----------AA----------CTCGATAGCATTTTGCTGCAAGGTGACGGTCTATTTTTAGCAACTC-TGACATTTGATT-------------GA-----------A-----------GTA-------------GA-----G-TAAATTATAACACATCTCGCTACACACACACAtg
gi|13 : ACCACTATATAAAAGATATTACATCACTTGAAACTTGTGTTTTAGTTTTCTGTGTACGCACGCA----TACTGTCCCTTTACA-ATGTTTTACA-C--TTT----T-T-------GTTT---ACCGTAG----------GCCTA----T---------------AGACATGTCACAT----------TG----------TTTC----------AA----------CTTGATAGCATTTTGCTGCAAGGTGACGGTCTATTTTTAGCAACTC-TGACATTTGATT-------------GA-----------A-----------ATA--------------------------------CACATCTCGCTAAACACACACA
gi|14 : aaaaaatACCACTAAATAAAAGATATTACTTCACTTGAAACTTGTGTTTTAGTTTTCTTTGTACGCGTGCA----TACTTTCCCTTTACA-ATGTTTTACA-C--TTTCTTTT-TTTACAATGGAT---ACCGTAG----------GCCTA----T---------------A----CATTACAT----------TG----------TTTC----------AA----------CTCGATAGCATTTTGCTGCAAGGTGACGGTCTATTTTTAGCAACTC-TGACATTTGATT-------------GA-----------A-----------ATA--------------------------------CACATCTCGCTACACAAACACAcacacg
gi|15 : aaatACCACTAAATAAAAGATATTACTTCACTAGAAACTTATGTTGTAGTTTTCTTTGTACGCATGCA----TACTGTCCTTTTACA-ATGTTTTACAGT--TTT----T-TTTACAATGTTT---ACCGTAA----------GCCTG----T---------------A----CGCCACAT----------TG----------TTTC----------AA----------CTCAATAGCATTTTGCTGCAAGGTG-----------------ACTT-CGACATTTGATC-------------GA-----------A-----------ATA-------------CA-----A-TAAATTATAATACATCTCGCTACACACACACcg
gi|16 : aaaaatTTGTGTTTTAGTTTTCTTTGTACGCGCGCA----TACTGTCCCTTTACA-GTGTTTTACA-C--TTG----TAATCACATTGTTT---G--------------------------------------------------AAAC----------TG----------TTTC----------AA----------CTCAATAGCAATTAGTTACAAGGTGACGGTCTATTTTTAGTACCTC-TAATATTTGACT-------------GA-----------A-----------GTATACACGTACAGTGGG-----G-TAAATTACAACACACCTCGCTGCACACACACAggagc
gi|17 : TATTACTTCACTTGAAACTTGTGTTTTAGTTTTCTTTGTACGCACACA----TACTGTCCTTTTACA-ATGTTTTACA-C--TTT----TTTTTACAATGTTT---ACCGTAG----------GCCTA----T---------------A----CGTCACAT----------TG----------TTTC----------AA----------CTCGATAGCATTTTGCTGCAAGGTGACGGTCTATTTTTAGCAACTC-TGACATTTGATT-------------GA-----------A-----------GTA-------------GA-----G-TAAATTATAACACATATCGCTACACACACACcacgtctatcagcggatggacgt
gi|18 : GCGCGCA----TACTGTCCGT--ACACATGTAT-ACA-C--TTT----T-TTTACAATGTGT---ACCGTAG----------GCCTA----TTTTTAGCGTAAAAACA----CGTCACAT----------TGGTTTAAACTGTTTC----------CA----------CTCGATAACATATTGCTACAAGGTAACGGTCT----------------GACATTTGATT-------------GA-----------AATACACACACAGTA-------------GG-----G-TAAATTATAACACATCTTGCTACACACATACAg
gi|19 : tTATTACTTCACTTGAAACTTGTGTTTTAGTTTTCTTTGTACGCACACA----TACTGTCCTTTTACA-ATGTTTTACA-C--TTT----T-TTTACAATGTTT---ACCGTAG----------GCCTA----T---------------A----CGTCACAT----------TG----------TTTC----------AA----------CTCGATAGCATTTTGCTGCAAGGTGACGGTCTATTTTTAGCAACTC-TGACATTTGATT-------------GA-----------A-----------GTA-------------GA-----G-TAAATTATAACACATATCGCTACACACACACagtttatgagcggatggccgt
gi|2 : ACTACTAAATTAAAGATACTACTTGACTAGAAATGCGTGTCTTAATTTTCTTTGTACACGCACA----TACTGTCC-----------CTTTACA-C--TTT----T-TT--CAATGTTT---ACCGTAG----------GTCTA----T---------------A----CGTGACAT----------TGTTTCAAACATTTTC----------AA----------CTCGATAGCGTTTAGGTACAAGGTGCCTG-CTATTTTTAGCA--CC-TGACATTTGCTT-------------GA-----------A-----------ATACACACGCAGT---GGT----G-TAAATTATAATACATCTCGCTACACACACACAg
gi|20 : ACCACTAAATAAAAGATATTACTTCACTTGAAACTTGTGTTTTAGTTTTCTTTGTACGCACGCA----TACTGTACTTTTACA-AGGTTTTACA-C--TTT----TTTTTACAATATTT---ACCGTAG----------GCCTA----T---------------T----CGTCACAT----------TG----------TTTC----------AA----------CTCGATAGCATTTTGCTGCAAGGTGACGGTCTATTTTTAGCAACTC-TGACATTTGATT-------------GA-----------A-----------GTA-------------Gtgtctatatgagcggatggacgt
gi|21 : aaatACCACTAAATAAATGATATAACTTCACTTGAAACTTGTGTTTTAGT---------ACACACGCA----TACAGTCCTTCTACA------------------------------ATGTTT-----------------------------T---------------A----CGTCACAT----------TG----------TTTC----------AA----------CTCGATAGCATTTTGCTGCAAGGTGACAGTCTATTTTCAGCAACTA-TGACATTTGA-T-------------GA-----------A-----------GTA-------------GA-----G-TAAATTAAAACACATCTCAATACACCCACACa
gi|22 : aaaatATATTAATTCACTTGAAACTTGTGTTTTAGTTTTCTTTGAACGCACGCA----TACTGTCCTTTTACA-ATGTTTTACA-C--TTT----T-TTTACAATGTTT---ACCATAG----------GCCGA----T---------------A----CGTCACAT----------TG----------TTTC----------AA----------ATCAATAGCAGTTTGCTGCAA------GGTCTATTTTTAGCAACTC-TGACATTTG---------------------------------------------------------------------ATTATAACACGTCTCGCTACACACACAgt
gi|23 : TAAATATAAGTTATTACTTCACTAGAAACTTGTGTTGTAGTTTTCTTTGTATGCACGCA----TACTGTCCTTTTACA-ATGTTTTACA-C--TTA----T-TTTACAATGTTA---ACCATAG----------A--TA----T---------------A----CGTCACAT----------TG----------TTTC----------AA----------CTCGATAGCATATTGCTGCAAGGTGACATTCTATTTTTAGCAACTC-TGACATTTGATT-------------
gi|24 : ACTTCACTTGAAACTTGTGTTTTAGTTTTCTTT--------------------------TACA-ATGCTTTACA-C--TTA----T-TTTACAATGTTT---ACCGTAG----------GCCTA----C---------------A----TGTCACAT----------TG----------TTAC----------AA----------CTCGATAGCATTTTGCTGCAAGGTGACGGTCTATTTTTAGCAACTG-TGACGTTTG---------------------------------------------------------------------ATTATAACACATCTCGCTGCACACACACA
gi|25 : ACAATATAT---ACCGTAC----------GCGTA----T---------------A----CATCACAT----------GG----------TTTC----------AAACTTTTTCAACTCAATAGCATTTTGCTGCAAGGTTACGATCTATTTTTAGCAACTC-GGACATTTGATT-------------GAAATACACACACA-----------GTA-------------GG-----G-TAAATTATTACACATCTCACTAcgt
gi|26 : TTTTACA-ATG-TTTACC-C--TAG----G-TCT---ATTCTT---AGCGTAA----------AA--A----T---------------A----TGTTGCAT----------TG----------TTTCA---------AA----------CTTGATA----------ACAAGGTGATTATCTACTTTAAACACCTC-TGACATTTGATT-------------GA-----------A-----------ATA-------------
gi|27 : gG----------TTTC----------AA----------CTCGATAGCATTTTGCTGCAAGGTGATGGTCTATTTTTAGCAACTC-TGACATTTGATT-------------GA-----------A-----------GTA-------------GA-----G-TAAATTATAGCACATCTCGCTACACACACACcacaggcagaatgcagaaat
gi|28 : CACTAAATAAAA--TATTACTTCACTAGAAACTTGTTTTTTCGTTTTCCTTGTACACACTCT----TACTGTCCTTgt
gi|29 : aaaacaaAGATATTACTTCACTAGAAACTTGTGTTTTAGTTTTCTTTGTATGCGCGGA----AACTGTaatca
gi|3 : ACCACTATATAAACGAAATTACTTCACTAGAAACTTTTGTTTTAGTTTTCTTTGTACGCGTGCA----TACTGTCCCTTTACA-ATGTTTTACA-CTTTTT----T-TTTACAATGTTT---ACCGTAG----------GTCTA----T---------------A----CATTACAT----------TG----------TTTCAAACTGTTTTAA----------CTCGATAGCATTTAGCTACAAGGTGACAGTCTATTTTTAATACCTC-TGACATTTAATT-------------G----------------------------------------------------------ACACATACAGCTACACACACACA
gi|4 : ACCGTTAA-TAAAATATATTACTTCACTAGAAACTTGTGTTTTAGTTTTCTTCGTACGCGCGCG----TTATGTCCCTTTACA-ATGTTTTACA-C--TTT----T-TTAACAATTTTT---ACCGTAG----------GTCTA----T---------------A----CGTCACATTATTTCTACCTG----------TTTC----------AA----------CTCGATAGCATTTAGCTATAAGGTGACGGTCTA-TTTTAGTACCTCTTGACATTT------------------A-----------A-----------GTG-------------GG-----G-TAAATTATAACACATATCGCTACACACACcacacacacatctatcagcggatggacat
gi|5 : ACCATTAAATAAAAGATATTACTTCAATTGAAACTTATGTTGTAGTTTTCTTTGTACGCACGCA----TATTGTCCTTTTACA-AAGTTATACA-C--TTT----T-TTTAAAATGTTT---ACCATAG----------GCCTA----T---------------A----CATCACAT----------TG----------TTTT----------AA----------CTCGATAGCATTTTGCTTCAAGGTGACGGTCTTTTTTTAGCAACTC-TGACATTTCATT-------------GA-----------T-----------ATA-------------CA-----A-TAAATTATAACACATCTCGCTACACACACACtctattatcagcggatggacgt
gi|6 : aaatTTCAGTTTTCTCTGTATACACACAATCATACTGTCCTTTCATA--TGTTTAACA----TAG----T-TTTACAATGTTTGTAACCGTAGCCTGTTCTTGGCATAAAATT---------------A----CGTCGCAT----------TG----------TTTC----------AAACTGTTTGTACTCGATGACATTTTGCTACAAGTAAACGGTCTATTTTTAGCACCTC-TGACATTTGATA-------------GA-----------A-------------A-------------GACATACG-CAGATTATAACACATTTCCTTACACACATATAgtctatgagcggatg
gi|7 : CTAGAAACATGTGTTTTAGTTTTCTTTGTATGCATGCA----TACTGTCTTTTTACA-ATGTTTTACA-C--TTT----T-TTTACAATGTTT---ACCGTAT----------GCCTA----T---------------A----CGTCATATTGTTTCAAACTG----------TTTC----------AA----------CTCGATAGCATTTTGCTACAAGGTGACAGTCTATTTTTAGCA--CC-TGACATTTGACT-------------GA-----------A-----------ATACACGCGCAGT---GG-----GTTAAATTATAACACATCTCGCTACACAAACGCAcatgtttatgagcggaatgacg
gi|8 : ACCACTAAATAAAAGATATTACTTCACTTGAAACTTGTGTTTTAGTTTTCTTTGGGCGCACGCA----TACTGTCCTTTTACA-ATG-TTTACA-C---TT----T-TTTAAAATGTTT---ACTGTAG----------GCCTA----T---------------G----CGTCACAT----------TG----------TTTC----------AA----------CTCGATAGAATTTTGCTGCAAGGTGA-GGCATATTTTTAGCAACTC-AGATATTTGATT-------------GA-----------AATACACGC---GCA-------------GG-----G-TAAATTACAACACATCTCGCTACACACACAcctctaggagcagatgaaca
gi|9 : aaatCACTAAATAAAAGATATTACTTCACTTGAAACTTGTGTTTTAGTTTTCTTTGCACGCGCGCA----TACTGTCCTTTTACA-ATGTTTTACC-C--TTT----TTTTTACAATTTTT---ACCGTAA----------GACGA----T---------------A----CGTCACAT----------TG----------TTTC----------AA----------CTCGATAGCATTTTGCTGCAAGGTGAAGGTCTATTGTTTGTAACTC-TGACATTGGATT-------------GA-----------A-----------GTA-------------GA-----G-TAAATTATAACACATCTTGCTACACACACA