lowQualScore : 111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 1111111111111111111111111111111111 11111111111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 11 111 22222 1111 111 55555555555 1 3333333333 44444 1111 1 000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 1 222222222 888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888 1111 111 11111 1 1111111 99999999999999999999999999999999 1 1 1111 33333 44444444444444 8888888888888888888888888888888888 2 9999999999999999999999 1 22 111 1 222 11 1 11111111 66666666666666666666666666666666666666666666666666666666666666666666666666666666666666666 1 33333 111 3333333333333333333 11111 666 66666666666666666666 222 1 1 1
lowQualScore : 3 88 1 7 6 222 00000 1 1111 6 666 1 22222222222 5 99 6 6666666666 6 44444 6 3 5 2222 4 7 6 666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666 2 222222222 2 22 555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555 2222 0 111 44444 0 0 2222222 33333333333333333333333333333333 5 2 11 3 9 3 99 0 3333 88 1 66666 11111111111111 8888888888888888888888888888888888 1 7 1 4444444444444444444444 6 777 1 8 99 111 1 444 22 0 5 4 8 88888888 77777777777777777777777777777777777777777777777777777777777777777777777777777777777777777 2 5 33333 6 6 0 999 1 5 77 0 0000000000000000000 66 3 44444 000 99 2 88888888888888888888 8 777 3 6 3 5
lowQualScore : . .. . . . ... ..... . .... . ... . ........... . .. . .......... . ..... . . . .... . . . ............................................................................................................................................. . ......... . .. .............................................................................................................................. .... . ... ..... . . ....... ................................ . . .. . . . .. . .... .. . ..... .............. .................................. . . . ...................... . ... . . .. ... . ... .. . . . . ........ ......................................................................................... . . ..... . . . ... . . .. . ................... .. . ..... ... .. . .................... . ... . . . .
lowQualScore : 7 33 0 7 7 888 00000 7 7777 7 555 0 66666666666 2 22 0 2222222222 7 55555 7 5 7 1111 3 9 4 555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555 4 000000000 2 88 777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777 1111 1 777 33333 9 1 9999999 00000000000000000000000000000000 0 4 88 3 2 5 22 8 4444 88 0 22222 55555555555555 0000000000000000000000000000000000 2 8 4 8888888888888888888888 0 888 0 0 44 888 4 222 66 2 0 8 0 44444444 22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222 5 0 00000 7 0 3 777 4 7 99 4 1111111111111111111 44 0 33333 333 77 5 77777777777777777777 8 555 3 0 3 0
consensus : NNNNTTTTTTNTTG--GTGGGTTGCGTNAGCAACTCACCAGTGTTGAC-----ATGCGAAA-T-TT-GAAGCTCCGTCAAAAGG-TGT-ATA-TACCTCATAAC--TCAGTGTACCAACACACCAAAA-A--T--A--GTGC-AA-AG-AA-ATTCCAAA-AAG----TACATAATGTTAAATATATAAAGACAAACA-AACAACTTANTTTAGGT-ANCC-GAATAAATTA-TATTCA--T-GTTTGCT----TCAAATGTGT-AAANAGCAT--C-----TGTTGAATGTAA-TAACATCTGT-TGAATGTA--------------------TATGAAATTACTACGCCATTGAAACC-------TTNGANCGTGTAC-----------GC-------C----T---------A----------T-GAATGAA-AGA----------CACGACGCTGT-------AGC----GTGT-----------ATAGTGTA---TT----GT----CTATAAATTG-AACAGTA-----GCAGACGATAAAAT-ACTGTTTACTAGTACCTTT-TAATCTATNCA--CAAT-CATGTA-TAAGTAATAGTGTTAGTGNAGGATCCTTTCCCATTATTTTATTAGTTAATTTANAAANGATATATTAATG-N---ATATAGTCTATAAA------------GGGCTATGCTACAG--C--------TAAC-ACAAAA---------CTTACTGTGTTACATAGTGCAATAACGCAAACACGCTTT---TTTACGCCCTG-CT-TGTGATATTTCTGATACTACAAATTTATA-CTGTACG--ATCCAGCCAGAATGTGTATTGGTCCCGTTATCGCCTGATAGCCATTAATTNGA----TATTGTTTTAA------C-TTTG-AACGA-----------------TACCAAATAA-----------TTTGCGGCA--TTT---G----A---AACGCAAGCTCTGCTTT---TAT-GATGGATTTACCAAATTATATATTATCAATTGTTG-T--AAAAAGAGGATC---AAAAACTTACTATTGAAA-CTCT-----TTTCAAT---CATTA-NAATTGNGAGTTCAAAG-TA-----------ACTTAATGTGTA---TA-TGTCTC-TGGATAAACCAAGT
Reference ( gi|2 ) : TACTTTTTTTGTTG--GTGGATTGCGTTAGCAACTCACCAGAGCTGAC-----ATGTGAAA-T-CT-GAAGCTCCGTCAAAAAACTGT-ATC-TACCTCATTAC--TCAGTGTATCAACACACCAAAA-A--T--A--GTGC-AA-GT-TA-ATTCCAAA-AAG----TACATACTGTTCAATATATAATGACAAACA-AACAAATTAATTTAGGT-ACCC-AAGTAAATTACTATTTATGT-ATTTGGT----TCAATTGTGT-AAATAGCAT--C-----TGTTGAATGTAAATAATATCTGC-TAAATGTA--------------------TATGAAATTACTACGCCAATGAAATC-------TTAGGTTGTGTAC-----------GC-------C----T---------A----------T-GAATGAG-AGA----------CACAACGCTGT-------AGC----GTGT-----------ATAGTGT----TT----GT----CTATAAATTA-AACAGTA-----GCAGACAATAAAAT-ACTGTTTACTAGTATCCTT-TAAACCATCCAGCCAAT-CATGTA-TAAGTAATAGAGTTAGTGAAGGAGCCTTTTCCATTATTTTGTTAGTTAATTTATAAAGGATATATTAATG-A---ATATAGTCTATAAA------------GGGCTATGCTAT-G--T--------T---------A---------CTTACGGTGTTACATAATGCAATAACGCAAACACGTTTTCCATTTACACCCTG-CTATGTG-TATTTCTGATACTATAAATTTATA-CTGAACG--ATCCTGCCGTGATGTGCTTTTGTCCTGTTATCGCCTGATAGTCATTTATAAGA----TATTGTTTTAA------C-TTTG-AACAA-----------------TACCAAATAA-----------T-----ACA--T-----G----A---AATACAACCTCTGCTGC---TAT-GGTGGATTTACCAAATTATATTTCATCAATTGTTG-T--AAAAAGAGGAT----AAAAATTTACTATTCAAA-CTCT-----TTTTAATCGACATTA-AAATTGCGAGTTC---G-TA-----------ACTTAATCTGTA---TA-TGTTTC-TGGATAAACAAAGTG
gi|1 : TTTTTTATTG--GTGGGTTGCGTTA----CTCAACAGTGTTGAC-----ATGCGAGA-T-TT-TGAGC---ATAGATAAATTGTCATAATTCCTCATAAC--AAAGTGTACCAACACACCAAAA-A--TGAA--GTGCAAA-AA-AA-AATCCAAA-AAG----TACACAATGCTCTATACATAAATACAAAT---ACAACCTATTGTAGAT-AACC-GAATATATTATTA-----GTCATTTG------TCAAATGTTT-GAAAAGCA------------TGAATGTAA--AACAT-TGTATAAAAATT--------------------TG-GAAATTACTACGCT-ATTAAACC-------TGTGGTCGTGGGC-----------TC-------TGGGAT---------T----------T-GTCTGAGTAAATATTATCCATTACAATG-TGTCGGAA--AGC----GCGA-----------AT-GTAT----TTTATGGT----CTATACATCG-AATAGCAAATATGCAGGC-ATGAA---ACT-TTTG-TA-TACCTTT-TAATCTAT--------T-CATGTA-TAAGTAATATTGTTAGTGTAGGA---TTATCTCCTATTTACTCA-TTAGTT--TAAATGAAAAGTTCATT-AT--ATATAGTCTATGA
gi|5 : aatatgTCTTTGTTTTCATAGATTGCATAAGCAACTCACCCGTTTTGACTTTCGATGTG------CT-AAAGC-ACGGCAAAATG-TGC-ATA-TACCTCACAACCCTCCGTGTACTAACACATCAAAA----T--ACCGTGC-AAAGG-AA-ATT--GAA-AGGAATATATATACTGTTAAATATATAAGGACAAAC---AC-AACTAATTTGAGTAACCC----TGAA----CATT----T-ATTTGCT----TCAAATGTAT-AAATG------------TGTTTAATGT---T-ATATTT-------CG-------------------------GAAATTATCACGCCGTCGAAAgcgtcagaatgcaataagcatacatgaacaacaagtaaccatatcatttaatcaaacaatataaatggtatatactgcaataacacaaacacgcttattttttgtgatatttctgatactactttacacttgttatccggccagaatatgtatttgtcccgttgatgtatgataatcattaatatgataattattatttttcccataatgacgggaaagtttcagtttgacttatcacattaaagaaatagttcgatacattgtaagtatattagagcattgcaatgtgtgtctaaaataaatttcatgaaatgtttcatttcaaattagttgcaattgttgtgaaaagggaatgatactcctttttaaatcattttacttggagttatgaattacgaaatcattgatttcatgtgtattatgtctctaggtaaacc
gi|16 : aTTTATTTTG--GTGGGTTGCGTGAGCAACTTACCAGTGTTTTC-----ATGCAAGATT-TT-GAGGGTCGGTAAAAAcatgtaaccgtgtatataaggttggcttgaatttaattaaatgaaagactacagtgtatcagaaggcgggacaatagccgtcgatcaaatactttttaccttgtaataggtgatagtgttagtgctggattctttcccattgtttaataaggatataaggatatattaatgtacatagtatataagtcagaattcaatgggctatactacaactaaccacgatactaactgaatcttatattatataccgcaattaca
gi|7 : ACTCATCAGTGTTAAT-----ATGTGGAA-T-TTCGAACCTC-GCTAAAAGG--GT-AGA-TACCTTATAAC--TCAGTGCACCAACGCATCAAAA-A--TGTA--GTGC-AA-GGACA-ATTCCAAA-AAG----TACATAATGTTCAATATATAAAGACAAACATAGC---TTGTTTTGTGT-ACCC-GAATAAATTACAAGTCATTT-GATTGGT----TCAAGTCTGTGAAAAAGCATGACTATTGTGTTGAATGT-ATTTATATTTTC------G-------------------------GAAATTACTACGCCATTGAAACCAATGTGGTTATGATGGGTTC-----------TCAAATTTTC----T--------------------T-GAATGAA-AGA----------CA-----CTAT-------AGC----GTATCGAAAAGCGGGACTGTAT----TTCAGAGT----CT-TAAAATAGAAGAAAA-----GCAGACGAT---AT-ATT-TTTGTTAA---CCTTGTA----ATCCA--CA---CATGTT-AAAGTAATGGTGTTAGTAAATGATCGTTTCCCATT
gi|3 : CACCAGAGTTGAC-----ATGTGAAA-T-TT-AAAGCTGCGTCAAAAG--TGG-ATA-TACCTCATCAA--TCAATGTACCAACATACCAAAA-ACAT--A--GTGC-AA-AG-AA-TTTCCAAA-AAG----TACATACTATTAAATATATAAAGACAAATA-AACAACTTAAATT--------C-A--TA--TT--TATTT---T-GTTTGTT----TCAAATGTGT-AAATAGCAT--C-----TGTTGAATGTAAATAACATCTGC-TGAATGTAAATAACATCTGTTGAATGTATATGAAATTACTACGCCATTGAAATC-------TTAGAATGTGTAC-----------AT-------T----T---------A----------T-GAATGAA-AAA----------CACGACGCTGT-------AGC----GTCA-----------ATAGTGG----TG----GT----CAATAAACTG-GACAGTA-----GCAGACGACAAAAT-ACTGTTAACTTCTATTTTT-TA----ATTTAGCCAAT-CATATA-TAAGTA--AAAGT--GTGCTAGATCCTTTCCCATTATGTTATTAGTTAATTTA-AACAGATATATTAATG-T---ATATAGCCTAGA---------------GACTATACTACAG--C--------TAACAATAAAA---------CTTATTGTGTTACATGGTGCAATAACGCTAACACG------------------------TG-TATTTCTGATACTACATATTTATA-CTGTACG--ATCCAGCCAAAATGTGTTTTGGTTCTGTTATCGCCTTATAGCCATTAATTAGA----TATTGTTTCAA------A-TTTA-AACGATACTTTTCATTGGAAGGTACCAAATAATTTGCGGCTTTT-----GCA--T-----G----A---AATGAAAGCTCTGCTGCTTTTAT-GATGAATTTACCAAATTATATATTATCAATTGTTG-T--AAAAAAAGGAT----CAAAA---ACTA----------T-----TTTCAAT---CATTA-AAATTG
gi|4 : cTGTGAAA-TGTT-GAAGCTCCGTCAAAAG--TGT-AAA-TACATCGTAAC--TCAGTGTACCAACACACCAAAA-ACAT--A--GTGC-AA-AG-AA-A--CTAAATAAA----TACATAACGTTAAATATATAAAGACAAATT-AACAGTTTGATTTAGGT-ATCG-AA-TAAATTAATATTC---T--TTTGCT----TTAATTGCTTCAAAT-GC------------------GTAAATAACATCTGT-TGAATGTA--------------------TATAAAATTATTACGCCATTGAAACC-------TTAGATTGGATACATTTATGACTGGC-------C----C---------AAGCATGTGGTT-GAATGAA-ATA----------CATGGCATTTT-------AAC----GTGT-----------AGAGGGTA---GT----GT----TTATTAACTG-AACAGTA-----GCAAACGATAAAAC-ATTGTTTACCAGTATCTTT-TAATCTATACAG----T-TATGCA-TTAATAATAGTGTTAAAGAAGGATCCTTTCCCATTATTTTACTAGTTAATTTAAAAATTATATAATTATG-C---ATATAGCATTTAAA------------GAGCTATGCTACAG--C--------TAATCACAAAA---------CTTACTGTGTTACATAGTACAATTATGCAAACACGCTTTTC
gi|8 : ACCTCATAAC--TCAGTGTACCAACTCACAAAAAGA--C--A--GTTC-AA-AG-AACATTCCAGA-AAC----TACAAAAAGTTAAATATAAAAGGCCAAACATAAC---TT-ATTGAGGT-ATCTGAAATAAA-TATTAGTCATCT-GGTTACT----TCAAATGTGT--------------------TTAAATGTA-------------TAAATATAT-------------------TTTGAAATCACTACGCTATTGAAACA-------TGTGACCATGTAT-----------TC-------A----T--------------------T-GAATGAA-TGAATTG------CACTGTGGTGTATCCTAAAGCGGGAGTGT-----------ATGCTGT----TG----AT----CTATAAATAG-AACAGTA-----GCAGACGAGAAA-------TT-----GTA------------ATC-----AATACATGTA-TAAGTAATAGTGTTgcaaattaaatgatactttttccaaatatttggcattggagcataccaaataattttctgcatttgcaaaaataaagctctgtatttatgatggatttaccaaattatatattatcaattttgtaaaaaaaagatcaaaaccttactattgaaacctttttttaatcatttcaattgcgagttcaaagtaataaaacattga
gi|15 : ccagtattaaaatgtgagattttttagcgcgttaaagttgtaaaaaA-AAA----TAAACACT-----ATAAATAAAGATAAA---GACAGCTTTTCTTAGGT-AACT-AAATGCATTG----TTAGAC-ATTTGATCGTATTGAATGTGT-GAAAAGCAT--A-----TGTTGCTT-----TAATATAT-------TGCA-----------------------GAAATTACTACGCCAGTGAAgt
gi|6 : TGT-AAATAGCAT--C-----TTTTGAATGTA
gi|6 : taataaatataagagaatacaacccaaactctatcattcactactggctaccctctcatataagttagcatatatgaaaactcacagatctgtggtagctttaagaATGTAAATAGCATCTTT-TGAATGTA--------------------TATGAAATTACTACGCAATTGAAACT-------TTGGATTGTGTATTTTTATGATTGGC-------C----CTGGAATGTGA----------TTGAATGAA-AGA----------CCCGACGCTGT-------AGC----GTGT-----------ATAGTGTA---GG----GT----CTATAAATTG-AACAGTA-----GCAGACGATAAAAT-ACTGTTTACTAGTACATTT-TAATATATACATGTA---CGTGTA-TAAGTAATAAGGTAAGAGAAGGATCCTTTCCCATTATTTTATTAGTTTCTTTAAAAAGGATATATTATTGTAAATATATAGTCTATAAA------------GGGCTATGCTAC-AACTAACCACAAC---------A---------CTTAC--TGTTAAATAGTGCAGTTATGCAAACACGCTTTCTTCTTACGCCCTG-TTtatgaaattactacgcaattgaaactttggattgtgtatttttatgattggccctggaatgtgattgaatgaaagacccgacgctgtagcgtgtatagtgtagggtctataaattgaacagtagcagacgataaaatactgtttactagtacattttaatatatacatgtacgtgtataagtaataaggtaagagaaggatcctttcccattattttattagtttctttaaaaaggatatattattgtaaatatatagtctataaagggctatgctacaactaaccacaacacttactgttaaatagtgcagttatgcaaacacgctttcttcttacgccctgttg
gi|13 : taataaatataagagaatacaacccaaactctatcattcactactggctaccctctcatataagttagcatatatgaaaactcacagatctgtggtagctttaag----------T-GAATGAA-AAA----------C-TGACGCTGT-------GGT----GTATCGGAAAGCG--AGAGTATAACATT----GTAGGCCTGTAAATAT-AACAGTA-----GTAGACGAGAACATGACATTTTATTGA-----CT-TAAACTATg
gi|18 : gaatggctctggatttaatCAATACATGTA-TAAGTAATAGTGTT-GTGatacagtttatcgtcatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnttaagaggaaacagataaattataatatata
gi|5 : tTGTAATAGGTGATAGTGTTAGTGCTGGATTCTTTCCCATTGTTTAATAAG--GAT--ATAA-GGATATATTAATG-T---ACATAGTATATAAGTCAGAATTCAATGGGCTATACTAcgtgtaccgtgttgaaaccatttt
gi|10 : atctttgttttcatagattgcataagcaactcacccgttttgactttcgatgtgctaaagcacggcaaaatgtgcatatacctcacaaccctccgtgtactaacacatcaaaataccgtgcaaaggaaattgaaaggaatatatatactgttaaatatataaggacaaacacaactaatttgagtaaccctgaacatttatttgcttcaaatgtataaatgtgtttaatgttatatttcggaaattatcacgccgtcgaaacatgtaaccgtgtatataaggttggcttgaatttaattaaatgaaagactacagtgtatcagaaggcgggacaatagccgtcgatcaaatactttttacctAGA------------GGGCTGTGCTACAG--C--------T---------AACCATAAAACTTGCTGTGTTACATAGTGCAACAGCGCAAA------------TTACGCCCTG-CTGTGTG-TATTTCTGATATTACAAATTTATA-CTGTACG---TTAAGCGAGAATGTGTATTGGCCCTGATATCGCCT---------------GA----TATC----------------------CAAGG---------------TACCAAATAA-----------T-----GCA--T-----G----C---AAAACAAACTCTGCTTG---TAT-GATGTATTTACCAAACTATATATTAGCAATTATGG-T--AAACTGAAGATC---AAAAACTTACTATTGGAA-CTCT-----TTTCAAT---CATTA-AAATTACGAGTTC---A-TA-----------TCTTAAGGTGTA---Tcaactaaccacgatactaactgaatcttatattatataccgcaattaca
gi|1 : TGGTATATACTGCAATAACACAAACACGCTT---ATTT----------TTTGTGATATTTCTGATACTAC---TTTACA-CT---TGTTATCCGGCCAGAATATGTATTTGTCCCGTTGATGTATGATAATCATTAATATGATAATTATTATTTT
gi|14 : aatatgttttttattggtgggttgcgttactcaacagtgttgacatgcgagattttgagcatagataaattgtcataattcctcataacaaagtgtaccaacacaccaaaaatgaagtgcaaaaaaaaatccaaaaagtacacaatgctctatacataaatacaaatacaacctattgtagataaccgaatatattattagtcatttgtcaaatgtttgaaaagcatgaatgtaaaacattgtataaaaatttggaaattactacgctattaaacctgtggtcgtgggctctgggatttgtctgagtaaatattatccattacaatgtgtcggaaagcgcgaatgtattttatggtctatacatcgaatagcaaatatgcaggcatgaaacttttgtataccttttaatctattcatgtataagtaatattgttagtgtaggattatctcctatttactcattagtttaaatgaaaagttcattatatatagtctatgagcgtcagaatgcaataagcatacatgaacaacaagtaaccatatcatttaatcaaacaatataaaTTTACACTATGACT-TGTAATATTTCTGATACTACAAATGTATAACT--ACG--ATCCTACCAGGATGTGTTTTGGTCTCATAATCGGCTGATAGCCAATTtcccataatgacgggaaagtttcagtttgacttatcacattaaagaaatagttcgatacattgtaagtatattagagcattgcaatgtgtgtctaaaataaatttcatgaaatgtttcatttcaaattagttgcaattgttgtgaaaagggaatgatactcctttttaaatcattttacttggagttatgaattacgaaatcattgatttcatgtgtattatgtctctaggtaaacc
gi|11 : atcaagcattaacacaaataactagtgtgcagcagttatccgtttaaaaacgtGTG-TATTTCTGATACTACAAATATATA-CTATACG--ATCCAGCCAGAATGTGTATTGGTTCTGTTATCGCCTGATAGCCATTAATTAGA----CATTGCTTCAAATGTTTCATTGG-AAC-G-----------------TACCAAATAA-----------TTTGCGGCATTT-----G----AATGAACACATGCTCTGCTTT---TAT-GATTGATTTACCAAAATATATT--ATCAATTGTTG-T--AAGAAGAGGAT----AAAAA----------AAA-CTGT-----TTTTAAT---CATTA-AAATTAAGAGTTTAAAG-TAATTAAACATTGACTTAATGTGTA---TA-TGTCTCGTGGATAAGCCAAG
gi|12 : TTTATTCAA----TATT--TTTA---------TTTGTAACG------------------TACCTAATAT-----------TTGGCGGCA--TTT---GCAACA---AATGCAAG---TACT-C---TAT-GATGGATTTACCAAATGATCTATTATAAAATGGTGTT--AAAAAAAAGATGGTAAAAAAAATACTATGAAAA-CTGT-----CTTCCAT---CATTA-TAGTTGGGAGTTC---
gi|4 : aaagtcatatattttatatttttgatgagttgcgtaagcataaaactgacagtttatgtctgtatgacatttcatgaaatatctttattttaaattcaaacgatacttTTTGG------C-ATTG-GAGCA-----------------TACCAAATAA-----------TTTTCTGCA--TTTGCAA----A---AATA-AAGCTCTGTATT---TAT-GATGGATTTACCAAATTATATATTATCAATT-TTG-T--AAAAAAAAGATC---AAAACCTTACTATTGAAACCTTT-----TTTTAAT---CATTT-CAATTGCGAGTTCAAAG-TA-----------Aaaagta
gi|9 : tgtgaaatgttgaagctccgtcaaaagtgtaaatacatcgtaactcagtgtaccaacacaccaaaaacatagtgcaaagaaactaaataaatacataacgttaaatatataaagacaaattaacagtttgatttaggtatcgaataaattaatattcttttgctttaattgcttcaaatgcgtaaataacatctgttgaatgtatataaaattattacgccattgaaaccttagattggatacatttatgactggcccaagcatgtggttgaatgaaatacatggcattttaacgtgtagagggtagtgtttattaactgaacagtagcaaacgataaaacattgtttaccagtatcttttaatctatacagttatgcattaataatagtgttaaagaaggatcctttcccattattttactagttaatttaaaaattatataattatgcatatagcatttaaagagctatgctacagctaatcacaaaacttactgtgttacatagtacaattatgcaaacacgcttttcgcaaattaaatgatactttttccaaata----A---AATGCAAGCTGTGCT-T---TATTGATGGATTTACCAAAGTATATAATATCAATTGGTG-TAGAGAAAGATGATC---CAAAACTTGCTATTGAAA-CTCTTATCCTTTTAAT---CATTA-TATTTGGGATTTTAAAG-TA-------------TAAATCAGTGACTTAGTATCTT-TGGATAAACCAAGTtaaaacattga
gi|1 : tactccaaaagtaatgagaagtgcaaATTT--CAAATTA-GTTGCA---ATTGTTG-T--GAAAAGGGAAT----GATA--CTCCTTTTTAAA--TCA-----TTTTACTTGGAGTTATGAATTACGAAATC---ATTG-----------ATTTCATGTGTAT--TA-TGTCTC-TAGGTAAACaatttacattaacagtaaaattgacaaaactaagtcatcaatgtaacaagaacttaaaggtcaccattataaccatcattgtcatcagtatcaacgtcattacaatcatcatcaacatcatcattttcttcttcccccttatcatcatcatcaacaacaaaaa
1 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|17 ): ACGGTAGATTGTGCATATATAACACAACGCTCGCTATCACGCGTGCTAAATCAAAATACCGT
Alignments
lowQualScore : 11111111111111111111111111111111111111111111111111
lowQualScore : 1 111 11 2222222 1111 222 1 11111 5555555555555555555555555 55555555555555555555555555555555555555555555555555555 222222222222 66666666666666666666666666666666666666666666666666 111 1111111 55555555555555555555555555555555555555555555555555555555 11111 1 22222 44444444444 1111 11111 333333333333 222 1111111111 4444444444444444444444444444444 1111 11 777777777777777777777777777777777777 11111 22222222222222 111 1111 1 11111 1111 333333333333 11 111 1
lowQualScore : 3 1 1 2 5 0 6666 000 22 99 5 77 5 77 9999999 5 5 5 5 1 5 2222 1 1 888 0 2 22222 88 6666666666666666666666666 4 0 00000000000000000000000000000000000000000000000000000 0 4 2 444444444444 55 1 66 33333333333333333333333333333333333333333333333333 4 9999 222 0 4444444 0 66 00000000000000000000000000000000000000000000000000000000 4 4 11111 0 1 4 2 11111 2 3 22222222222 0 1 4444 1 3 55555 0 444444444444 222 1 7777777777 1 4 66 77 0 3333333333333333333333333333333 6 9 2 4 0 2 3 77 4444 00 555555555555555555555555555555555555 33333 33333333333333 999 000 1 2 0 7777 0 1 44 2 0 4 5 1 22222 888 1 1 5 11 2222 000000000000 11 444 88 0
lowQualScore : . . . . . . .... ... .. .. . .. . .. ....... . . . . . . .... . . ... . . ..... .. ......................... . . ..................................................... . . . ............ .. . .. .................................................. . .... ... . ....... . .. ........................................................ . . ..... . . . . ..... . . ........... . . .... . . ..... . ............ ... . .......... . . .. .. . ............................... . . . . . . . .. .... .. .................................... ..... .............. ... ... . . . .... . . .. . . . . . ..... ... . . . .. .... ............ .. ... .. .
lowQualScore : 5 0 0 5 0 0 4444 444 22 44 7 66 7 99 1111111 7 7 7 7 7 7 1111 3 3 999 8 8 44444 44 4444444444444444444444444 7 1 00000000000000000000000000000000000000000000000000000 1 4 0 000000000000 88 0 99 55555555555555555555555555555555555555555555555555 4 4444 999 9 4444444 1 11 77777777777777777777777777777777777777777777777777777777 4 0 11111 8 9 4 2 00000 9 7 55555555555 1 0 0000 0 5 22222 1 222222222222 111 6 0000000000 4 0 99 99 7 9999999999999999999999999999999 7 3 2 0 7 5 7 00 2222 88 222222222222222222222222222222222222 77777 55555555555555 777 000 7 0 1 5555 2 9 88 0 2 5 0 4 55555 888 0 0 7 66 1111 666666666666 00 000 88 0
consensus : NNNNTTTTNTNTTGGTGGGTTGCGTNAGCAACTCACCAGTGTTGACATGCGAGA-T-TT-GA-AGCTCCGTCAAAAGN-TGT-AT-ATA-CCTCATAA--CTCAGTGTACCAACACACCAAAA-A--T--AGTGC-AAA-GA-A-ATTCCAAA-AAG----TACATAATGTTAAATATATAAAGACAAAC-AACAACTTANTTTAGGTANCC--G-AATAAATTA-T-----ATTCA--T---G--T--TTGCTTCAAATGTGT--------------------AAANAGCAT--CTGTTGAATGT-AA-TAACATCTGT-TGAATGTA--TAT-------GAAATTACTACGCCATTGAAACCTTNGATCGTG--TAC-T---------G-------CC--------T---------A----------T-GAATGAA----AGACACGACGCTGT-------AGCGTG--T---------AT-----------AG------TGTA---T--T-----G----T----CTATAA-ATNGAACAGTA-----GCAGACGATAAAAT-ACTGTTTACTA-TACCTTTTAATCTAT-CA--CA-T-CATGTATAAGTAATAGTGTTAGTGAAGGATCCTTTCCCATTATTTTATTAGTTAATTTAAA--AAGGATATATTAATG----TATATAGTCTATAAA------------GGGCTATGCTACAGCTAA-C-ACAAAACTTACT-G-------TGTTACATAGTGCAATNA--CGC--AAACACGCT---T-T---TTTACGCCCTG-CT-TGTG-TATTTCTGATACTACAAATTTATA-CTGTACGATCCNGCCAGAATGTGTNTTGGTCCCGTTATCGCCTGATAGCCATTAATTAGA----TATTGTTTCAA------C-TTTG-AACGA-----------------TACCAAATAATTTGCGGCATT----TG----A---AACGCAAGCT---CTGCTTTTATGATGGATTTACCAAATTATATATTATCAATTGTTGT----AAAAAGAGGATCAAAAACTTACTATTGAAA-CTCT-----TTTTAAT---CATTANAATTGCGAGTT-CAAAG----TA-----------ACTTAAT--GTG---TA-TATGTCTC-TGGATAAACCAAGT
Reference ( family-2886 ) : NNNNTTTTTTNTTGGTGGGTTGCGTNAGCAACTCACCAGTGTTGACATGCGAAA-T-TT-GA-AGCTCCGTCAAAAGG-TGT-AT-ATA-CCTCATAA--CTCAGTGTACCAACACACCAAAA-A--T--AGTGC-AAA-GA-A-ATTCCAAA-AAG----TACATAATGTTAAATATATAAAGACAAACAAACAACTTANTTTAGGTANCC--G-AATAAATTA-T-----ATTCA--T---G--T--TTGCTTCAAATGTGT--------------------AAANAGCAT--CTGTTGAATGT-AA-TAACATCTGT-TGAATGTA--TAT-------GAAATTACTACGCCATTGAAACCTTNGANCGTG--TAC-----------G-------CC--------T---------A----------T-GAATGAA----AGACACGACGCTGT-------AGCGTG--T---------AT-----------AG------TGTA---T--T-----G----T----CTATAA-ATTGAACAGTA-----GCAGACGATAAAAT-ACTGTTTACTAGTACCTTTTAATCTATNCA--CAAT-CATGTATAAGTAATAGTGTTAGTGNAGGATCCTTTCCCATTATTTTATTAGTTAATTTANA--AANGATATATTAATG----NATATAGTCTATAAA------------GGGCTATGCTACAGCTAA-C-ACAAAACTTACT-G-------TGTTACATAGTGCAATAA--CGC--AAACACGCT---T-T---TTTACGCCCTG-CT-TGTGATATTTCTGATACTACAAATTTATA-CTGTACGATCCAGCCAGAATGTGTATTGGTCCCGTTATCGCCTGATAGCCATTAATTNGA----TATTGTTTTAA------C-TTTG-AACGA-----------------TACCAAATAATTTGCGGCATT----TG----A---AACGCAAGCT---CTGCTTTTATGATGGATTTACCAAATTATATATTATCAATTGTTGT----AAAAAGAGGATCAAAAACTTACTATTGAAA-CTCT-----TTTCAAT---CATTANAATTGNGAGTT-CAAAG----TA-----------ACTTAAT--GTG---TA-TATGTCTC-TGGATAAACCAAGT
gi|1 : TTTTTTATTGGTGGGTTGCGTTA----CTCAACAGTGTTGACATGCGAGA-T-TT-TG-AGCATAG--ATAAAT-TGTCATAATT-CCTCATAA--CAAAGTGTACCAACACACCAAAA-A--TGAAGTGCAAAA-AA-A-AATCCAAA-AAG----TACACAATGCTCTATACATAAATACAAAT--ACAACCTATTGTAGATAACC--G-AATATATTATT-----AGTCA---------T--TTG--TCAAATGTTT--------------------GAAAAGCA-------TGAATGT-AA--AACAT-TGTATAAAAATT--TG--------GAAATTACTACGCTATT-AAACCTGTGGTCGTG--GGC-----------T-------CTGGGATTTGT---------C----------T-GAGTAAATATTATCCATTACAATGTGTCGGAAAGCGCGAAT---------GT-----------AT------TTTA---T--G-----G----T----CTATAC-ATCGAATAGCAAATATGCAGGC-ATGAA---ACT-TTTG-TA-TACCTTTTAATCTAT--------T-CATGTATAAGTAATATTGTTAGTGTAGGATTATCTCCTA----TTTACTCATTAGTTTAAATGAAAAGTTCATTA-------TATATAGTCTATGA
gi|1 : aatatg-------TGGTATATACTGCAATAA--CAC--AAACACGCT---TAT---TTT----------T-TGTGATATTTCTGATACTAC---TTTACA-CT-TGTTATCCGGCCAGAATATGTATTTGTCCCGTTGATGTATGATAATCATTAATATGATAATTATTATTTTgcgtcagaatgcaataagcatacatgaacaacaagtaaccatatcatttaatcaaacaatataaatggtatatactgcaataacacaaacacgcttattttttgtgatatttctgatactactttacacttgttatccggccagaatatgtatttgtcccgttgatgtatgataatcattaatatgataattattatttttcccataatgacgggaaagtttcagtttgacttatcacattaaagaaatagttcgatacattgtaagtatattagagcattgcaatgtgtgtctaaaataaatttcatgaaatgtttcatttcaaattagttgcaattgttgtgaaaagggaatgatactcctttttaaatcattttacttggagttatgaattacgaaatcattgatttcatgtgtattatgtctctaggtaaacc
gi|1 : aatatgttttttattggtgggttgcgttactcaacagtgttgacatgcgagattttgagcatagataaattgtcataattcctcataacaaagtgtaccaacacaccaaaaatgaagtgcaaaaaaaaatccaaaaagtacacaatgctctatacataaatacaaatacaacctattgtagataaccgaatatattattagtcatttgtcaaatgtttgaaaagcatgaatgtaaaacattgtataaaaatttggaaattactacgctattaaacctgtggtcgtgggctctgggatttgtctgagtaaatattatccattacaatgtgtcggaaagcgcgaatgtattttatggtctatacatcgaatagcaaatatgcaggcatgaaacttttgtataccttttaatctattcatgtataagtaatattgttagtgtaggattatctcctatttactcattagtttaaatgaaaagttcattatatatagtctatgagcgtcagaatgcaataagcatacatgaacaacaagtaaccatatcatttaatcaaacaatataaaATTT--CAAATTA---GTTG-CAATTGTTGT----GAAAAGGGAAT--GATACTC-CTTTTTAAA--TCA-----TTTTA-----C-TTGGAGTTATGAATTACGAAATCATTG-----------ATTTCAT--GTG---TATTATGTCTC-TAGGTAAACCtcccataatgacgggaaagtttcagtttgacttatcacattaaagaaatagttcgatacattgtaagtatattagagcattgcaatgtgtgtctaaaataaatttcatgaaatgtttcatttcaaattagttgcaattgttgtgaaaagggaatgatactcctttttaaatcattttacttggagttatgaattacgaaatcattgatttcatgtgtattatgtctctaggtaaacc
gi|10 : aatatgttttttattggtgggttgcgttactcaacagtgttgacatgcgagattttgagcatagataaattgtcataattcctcataacaaagtgtaccaacacaccaaaaatgaagtgcaaaaaaaaatccaaaaagtacacaatgctctatacataaatacaaatacaacctattgtagataaccgaatatattattagtcatttgtcaaatgtttgaaaagcatgaatgtaaaacattgtataaaaatttggaaattactacgctattaaacctgtggtcgtgggctctgggatttgtctgagtaaatattatccattacaatgtgtcggaaagcgcgaatgtattttatggtctatacatcgaatagcaaatatgcaggcatgaaacttttgtataccttttaatctattcatgtataagtaatattgttagtgtaggattatctcctatttactcattagtttaaatgaaaagttcattatatatagtctatgagcgtcagaatgcaataagcatacatgaacaacaagtaaccatatcatttaatcaaacaatataaatggtatatactgcaataacacaaacacgcttattttttgtgatatttctgatactactttacacttgttatccggccagaatatgtatttgtcccgttgatgtatgataatcattaatatgataattattatttttcccataatgacgggaaagtttcagtttgacttatcacattaaagaaatagttcgatacattgtaagtatattagagcattgcaatgtgtgtctaaaataaatttcatgaaatgtttcAGA------------GGGCTGTGCTACAGCTAA-CCATAAAACTTGCT-G-------TGTTACATAGTGCAACAG--CGC--AAA----------------TTACGCCCTG-CTGTGTG-TATTTCTGATATTACAAATTTATA-CTGTACG-TTAAGCGAGAATGTGTATTGGCCCTGATATCGCCT---------------GA----TATC----CAA----------------GG-----------------TACCAAATAAT-----GCATG----CA----A---AAC--AAACT---CTGCTTGTATGATGTATTTACCAAACTATATATTAGCAATTATGGT----AAACTGAAGATCAAAAACTTACTATTGGAA-CTCT-----TTTCAAT---CATTAAAATTACGAGTT-CA-------TA-----------TCTTAAG--GTG---TA-T
gi|11 : GTG-TATTTCTGATACTACAAATATATA-CTATACGATCCAGCCAGAATGTGTATTGGTTCTGTTATCGCCTGATAGCCATTAATTAGA----CATTGCTTCAAATGTTTCATTGG-AACG------------------TACCAAATAATTTGCGGCATT----TG----AATGAACACATGCT---CTGCTTTTATGATTGATTTACCAAA--ATATATTATCAATTGTTGT----AAGAAGAGGAT-AAAAA----------AAA-CTGT-----TTTTAAT---CATTAAAATTAAGAGTT-TAAAG----TAATTAAACATTGACTTAAT--GTG---TA-TATGTCTCGTGGATAAGCCAAG
gi|12 : TTTATTCAA----TATT--TTTA---------TTTGTAACG------------------TACCTAATATTTGGCGGCATT----TGCAACA---AATGCAAG------TACTCT-ATGATGGATTTACCAAATGATCTATTATAAAATGGTGTTAAAAAAAAGATGGTAAAAAAAATACTATGAAAA-CTGT-----CTTCCAT---CATTATAGTTGGGAGTT-CAAAG----TA-----------
gi|13 : aaagtcatatattttatatttttgatgagttgcgtaagcataaaactgacagtttatgtctgtatgacatttcatgaaatatctttattttaaattcaaacgatactt----------T-GAATGAA----AAAC-TGACGCTGT-------GGTGTA--TCGGAAAGCGAG-----------AG------TATAACAT--T-----G----TAGGCCTGTAA-ATATAACAGTA-----GTAGACGAGAACATGACATTTTATTG--AC---TTAAACTATATA--CAGT-
gi|14 : gaatggctctggatttaatTAA-C-ACAAA--TAACTAG-------TGT-GCA----GCAGTTATCCGTTTAAAAACG-------T---TTTACACTATGACT-TGTAATATTTCTGATACTACAAATGTATAACT--ACGATCCTACCAGGATGTGTTTTGGTCTCATAATCGGCTGATAGCCAttatcgtcatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnttaagaggaaacagataaattataatatata
gi|15 : atcaagcatATAAATAAAGATAAA--GACAGCTTTTCTTAGGTAACT--A-AATGCATTG-TTAGACATT----T---G--A--TCGTATTGAATGTGT--------------------GAAAAGCAT--ATGTTG-CTTT-AA-TA-----TAT-TGCA----------------GAAATTACTACGCCAGTGAAatt
gi|16 : aaaataaacactTTTATTTTGGTGGGTTGCGTGAGCAACTTACCAGTGTTTTCATGCAAGATT-TT-GA-GGGTCGGTAAAAA
gi|18 : --CAATACATGTATAAGTAATAGTGTT-GTG
gi|2 : tTTTTTTGTTGGTGGATTGCGTTAGCAACTCACCAGAGCTGACATGTGAAA-T-CT-GA-AGCTCCGTCAAAAAACTGT-AT-CTA-CCTCATTA--CTCAGTGTATCAACACACCAAAA-A--T--AGTGC-AAG-TT-A-ATTCCAAA-AAG----TACATACTGTTCAATATATAATGACAAACAAACAAATTAATTTAGGTACCC--A-AGTAAATTACT-----ATTTA--T---GTAT--TTGGTTCAATTGTGT--------------------AAATAGCAT--CTGTTGAATGTAAA-TAATATCTGC-TAAATGTA--TAT-------GAAATTACTACGCCAATGAAATCTTAGGTTGTG--TAC-----------G-------CC--------T---------A----------T-GAATGAG----AGACACAACGCTGT-------AGCGTG--T---------AT-----------AG------TGT----T--T-----G----T----CTATAA-ATTAAACAGTA-----GCAGACAATAAAAT-ACTGTTTACTAGTATCCTTTAAACCATCCAGCCAAT-CATGTATAAGTAATAGAGTTAGTGAAGGAGCCTTTTCCATTATTTTGTTAGTTAATTTATA--AAGGATATATTAATG----AATATAGTCTATAAA------------GGGCTATGCTAT-GTT----------ACTTACG-G-------TGTTACATAATGCAATAA--CGC--AAACACGTT---T-TCCATTTACACCCTG-CTATGTG-TATTTCTGATACTATAAATTTATA-CTGAACGATCCTGCCGTGATGTGCTTTTGTCCTGTTATCGCCTGATAGTCATTTATAAGA----TATTGTTTTAA------C-TTTG-AACAA-----------------TACCAAATAAT-----ACA------TG----A---AATACAACCT---CTGCTGCTATGGTGGATTTACCAAATTATATTTCATCAATTGTTGT----AAAAAGAGGAT-AAAAATTTACTATTCAAA-CTCT-----TTTTAATCGACATTAAAATTGCGAGTT-C---G----TA-----------ACTTAAT--CTG---TA-TATGTTTC-TGGATAAACAAAGTcgtgtaccgtgttgaaaccatttt
gi|3 : tactCACCAGAGTTGACATGTGAAA-T-TT-AA-AGCTGCGTCAAAAG--TGG-AT-ATA-CCTCATCA--ATCAATGTACCAACATACCAAAA-ACAT--AGTGC-AAA-GA-A-TTTCCAAA-AAG----TACATACTATTAAATATATAAAGACAAATAAACAACTTA----------------AAT---TCA-T-----ATTTA--TTTTG--T--TTGTTTCAAATGTGTAAATAGCATCTGTTGAATGTAAATAACAT--CTGCTGAATGT-AAATAACATCTGT-TGAATGTA--TAT-------GAAATTACTACGCCATTGAAATCTTAGAATGTG--TAC-----------A-------TT--------T---------A----------T-GAATGAA----AAACACGACGCTGT-------AGCGTC--A---------AT-----------AG------TG-G---T--G-----G----T----CAATAA-ACTGGACAGTA-----GCAGACGACAAAAT-ACTGTTAACTTCTATTTTTTAATTTA-GC---CAAT-CATATATAAGTAAAAGT----GTGCTAGATCCTTTCCCATTATGTTATTAGTTAATTTA-A--ACAGATATATTAATG----TATATAGCCTAGA---------------GACTATACTACAGCTAA-CAATAAAACTTATT-G-------TGTTACATGGTGCAATAA--CGC--TAACACG--------------------TG---------TATTTCTGATACTACATATTTATA-CTGTACGATCCAGCCAAAATGTGTTTTGGTTCTGTTATCGCCTTATAGCCATTAATTAGA----TATTGTTTCAA------A-TTTA-AACGATACTTTTCATTGGAAGGTACCAAATAATTTGCGGCTTTTGCATG----A---AATGAAAGCTCTGCTGCTTTTATGATGAATTTACCAAATTATATATTATCAATTGTTGT----AAAAAAAGGATCAAAAAC-TA-------------T-----TTTCAAT---CATTAAAATTGg
gi|4 : cTGTGAAA-TGTT-GA-AGCTCCGTCAAAAG--TGT-AA-ATA-CATCGTAA--CTCAGTGTACCAACACACCAAAA-ACAT--AGTGC-AAA-GA-A-A--CTAAATAAA----TACATAACGTTAAATATATAAAGACAAATTAACAGTTTGATTTAGGTATC---G-AATAAATTAAT-----ATTC---T------T--TTGCTTTAATTGCTT--------------------CAAATGCGT---------A----AA-TAACATCTGT-TGAATGTA--TAT-------AAAATTATTACGCCATTGAAACCTTAGATTGGA--TACATTTATGACTGG-------CC--------C---------AAGCATGTGGTT-GAATGAA----ATACATGGCATTTT-------AACGTG--T---------AG-----------AG------GGTA---G--T-----G----T----TTATTA-ACTGAACAGTA-----GCAAACGATAAAAC-ATTGTTTACCAGTATCTTTTAATCTAT--A--CAGT-TATGCATTAATAATAGTGTTAAAGAAGGATCCTTTCCCATTATTTTACTAGTTAATTTAAA--AATTATATAATTATG----CATATAGCATTTAAA------------GAGCTATGCTACAGCTAATC-ACAAAACTTACT-G-------TGTTACATAGTACAATTA--TGC--AAACACGCT---T-T---T
gi|4 : TTTGG------C-ATTG-GAGCA-----------------TACCAAATAATTTTCTGCATT----TGCAA-A---AATA-AAGCT---CTGTATTTATGATGGATTTACCAAATTATATATTATCAATT-TTGT----AAAAAAAAGATCAAAACCTTACTATTGAAACCTTT-----TTTTAAT---CATTTCAATTGCGAGTT-CAAAG----TA-----------Acgcaaattaaatgatactttttccaaatatttggcattggagcataccaaataattttctgcatttgcaaaaataaagctctgtatttatgatggatttaccaaattatatattatcaattttgtaaaaaaaagatcaaaaccttactattgaaacctttttttaatcatttcaattgcgagttcaaagtaataaaacattga
gi|5 : tgtgaaatgttgaagctccgtcaaaagtgtaaatacatcgtaactcagtgtaccaacacaccaaaaacatagtgcaaagaaactaaataaatacataacgttaaatatataaagacaaattaacagtttgatttaggtatcgaataaattaatattcttttgctttaattgcttcaaatgcgtaaataacatctgttgaatgtatataaaattattacgccattgaaaccttagattggatacatttatgactggcccaagcatgtggttgaatgaaatacatggcattttaacgtgtagagggtagtgtttattaactgaacagtagcaaacgataaaacattgtttaccagtatcttttaatctatacagttatgcattaataatagtgttaaagaaggatcctttcccattattttactagttaatttaaaaattatataattatgcatatagcatttaaagagctatgctacagctaatcacaaaacttactgtgttacatagtacaattatgcaaacacgcttttcgcaaattaaatgatactttttccaaataTTTGTTTTCATAGATTGCATAAGCAACTCACCCGTTTTGACTTTCGATG-TGCT-AA-AGC-ACGGCAAAATG-TGC-AT-ATA-CCTCACAACCCTCCGTGTACTAACACATCAAAATA--C--CGTGC-AAAGGA-A-ATT--GAA-AGGAATATATATACTGTTAAATATATAAGGACAAAC--ACAAC-TAATTTGAGTAACCCTG-AAC--ATT---------------T---A--T--TTGCTTCAAATGTAT--------------------AA-----AT--GTGTTTAATGT-TA-TA-----TTT-CG------------------GAAATTATCACGCCGTCGAAACATGTAACCGTG--TATATAAGGTTG--G-------CT--------T---------GAATTTAAT--T-AAATGAA----AGAC-------------------------T---------AC-----------AG------TGTA---T-------------------CAGAAGGCGGGACAATA-----GCCGTCGATCAAAT-ACT-TTT-----TACCTTGTA---------------------ATAGGTGATAGTGTTAGTGCTGGATTCTTTCCCATTGTTTAATAAG--GATAT-----AAGGATATATTAATG----TACATAGTATATAAGTCAGAATTCAATGGGCTATACTACAACTAACC-ACGATACTAACT-GAATCTTATATTATATACCGCAATTA--Ctaaaacattga
gi|6 : atcGCTTTAAG-ATGT--------------------AAATAGCAT--CTTTTGAATGT-Aa
gi|6 : taataaatataagagaatacaacccaaactctatcattcactactggctaccctctcatataagttagcatatatgaaaactcacagatctgtggtaATGT-AAATAGCATCTTT-TGAATGTA--TAT-------GAAATTACTACGCAATTGAAACTTTGGATTGTG--TATTTTTATGATTGG-------CC--------CTGGAATGTGA----------TTGAATGAA----AGACCCGACGCTGT-------AGCGTG--T---------AT-----------AG------TGTA---G--G-----G----T----CTATAA-ATTGAACAGTA-----GCAGACGATAAAAT-ACTGTTTACTAGTACATTTTAATATATACA--TGTA-CGTGTATAAGTAATAAGGTAAGAGAAGGATCCTTTCCCATTATTTTATTAGTTTCTTTAAA--AAGGATATATTATTGTAAATATATAGTCTATAAA------------GGGCTATGCTACAACTAACC-ACAACACTTAC----------TGTTAAATAGTGCAGTTA--TGC--AAACACGCTTTCT-T---CTTACGCCCTG-TT-tatgaaattactacgcaattgaaactttggattgtgtatttttatgattggccctggaatgtgattgaatgaaagacccgacgctgtagcgtgtatagtgtagggtctataaattgaacagtagcagacgataaaatactgtttactagtacattttaatatatacatgtacgtgtataagtaataaggtaagagaaggatcctttcccattattttattagtttctttaaaaaggatatattattgtaaatatatagtctataaagggctatgctacaactaaccacaacacttactgttaaatagtgcagttatgcaaacacgctttcttcttacgccctgttg
gi|7 : taataaatataagagaatacaacccaaactctatcattcactactggctaccctctcatataagttagcatatatgaaaactcacagatctgtggtagctttaagACTCATCAGTGTTAATATGTGGAA-T-TTCGA-ACCTC-GCTAAAAGG--GT-AG-ATA-CCTTATAA--CTCAGTGCACCAACGCATCAAAA-A--TGTAGTGC-AAG-GACA-ATTCCAAA-AAG----TACATAATGTTCAATATATAAAGACAAAC--ATAGCTTGTTTTGTGTACCC--G-AATAAATTA-CA----AGTCA--T---T--TGATTGGTTCAAGTCTGTG-------------------AAAAAGCATGACTATTG----------------TGT-TGAATGTATTTATATTTTCGGAAATTACTACGCCATTGAAACC----AATGTGGTTAT-----------GATGGGTTCT--------C---------AAATTTTCT--T-GAATGAA----AGACA-----CTAT-------AGCGTA--TCGA------AA-----------AGCGGGACTGTA---T--TTCAGAG----T----CTTAAA-ATAGAAGAAAA-----GCAGACGAT---AT-ATT-TTTGTTA--ACCTTGTAATC----CA--CA---CATGTTAAAGTAATGGTGTTAGTAAATGATCGTTTCCCATTg
gi|8 : CCAGTATTAAAATGTGAGA-T-TT-TTTAGCGC-GTTAAA-GT-TGT-AA-AAAACCTCATAA--CTCAGTGTACCAACTCACAAAAAGA--C--AGTTC-AAA-GA-ACATTCCAGA-AAC----TACAAAAAGTTAAATATAAAAGGCCAAAC--ATAACTTA-TTGAGGTATCT--GAAATAAATAT-T-----AGTCATCT---G--G--TTACTTCAAATGTGT----------------------------------TTAAATGT-A-------------TAAATATAT-TTT-------GAAATCACTACGCTATTGAAACATGTGACCATG--TAT-----------T-------CA--------T--------------------T-GAATGAA----TGA-ATTGCACTGT-------G--GTG--T---------ATCCTAAAGCGGGAG------TGTA---TGCT-----GTTGAT----CTATAA-ATAGAACAGTA-----GCAGACGAGAAA-------------------TTGTAATCAATA---------CATGTATAAGTAATAGTGTT
gi|9 : ----A---AATGCAAGCT---GTGCTTTATTGATGGATTTACCAAAGTATATAATATCAATTGGTGTAG--AGAAAGATGATCCAAAACTTGCTATTGAAA-CTCTTATCCTTTTAAT---CATTATATTTGGGATTT-TAAAG----TA-------------TAAATCAGTGACTTA--GTATCTT-TGGATAAACCAAGTgt
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|17 ): ACGGTAGATTGTGCATATATAACACAACGCTCGCTATCACGCGTGCTAAATCAAAATACCGT
Alignments
lowQualScore : 111111111111111111111111111111111111111111111111111111111111 1111111111111111111111111111111111111111111111
lowQualScore : 1 111 11 2222222 1111 22222 1 11111 55555555555555555555555 5555555555555555555555555555555555555555555555555555 222222222222 1111111 11111111 444444444444444444444444444444444444444444444444444444444444 111 1111111 55555555555555555555555555555555555555555555555555555555 11111 1 2222222 5555555555555 1111 333333333333 222 1111111111 444444444444444444444444444 1 1111 0000000000000000000000000000000000000000000000 11111 22222222222222 111 1111 1 11111 333333333333 11 111 1
lowQualScore : 1 1 1 2 1 5 0 6666 000 22 77 5 77 5 77 9999999 5 5 5 5 1 5 2222 1 1 55555 0 2 22222 88 66666666666666666666666 4 0 0000000000000000000000000000000000000000000000000000 0 4 2 444444444444 6666666 66 4 88888888 000000000000000000000000000000000000000000000000000000000000 4 9999 222 0 4444444 0 66 00000000000000000000000000000000000000000000000000000000 4 1 11111 0 1 4 2 8888888 2 3 5555555555555 66 0 1 99 5 3 4444 0 444444444444 222 1 7777777777 1 1 66 77 0 333333333333333333333333333 3 6 9 1 1 0 1 2222 1 0 6 3333333333333333333333333333333333333333333333 33333 33333333333333 999 000 1 2 0 7777 0 1 44 2 0 4 5 1 22222 9999999 66 0 99 000000000000 11 444 88 0
lowQualScore : . . . . . . . .... ... .. .. . .. . .. ....... . . . . . . .... . . ..... . . ..... .. ....................... . . .................................................... . . . ............ ....... .. . ........ ............................................................ . .... ... . ....... . .. ........................................................ . . ..... . . . . ....... . . ............. .. . . .. . . .... . ............ ... . .......... . . .. .. . ........................... . . . . . . . .... . . . .............................................. ..... .............. ... ... . . . .... . . .. . . . . . ..... ....... .. . .. ............ .. ... .. .
lowQualScore : 0 0 0 5 1 0 0 4444 444 22 99 7 66 7 99 1111111 7 7 7 7 7 7 1111 3 3 66666 8 8 44444 44 44444444444444444444444 7 1 4444444444444444444444444444444444444444444444444444 1 4 0 000000000000 2222222 00 2 11111111 111111111111111111111111111111111111111111111111111111111111 4 4444 999 9 4444444 1 11 77777777777777777777777777777777777777777777777777777777 4 0 11111 8 9 4 2 1111111 9 7 3333333333333 11 5 6 22 2 5 2222 1 222222222222 111 6 0000000000 4 0 99 99 7 888888888888888888888888888 3 7 3 0 0 7 9 1111 4 1 6 8888888888888888888888888888888888888888888888 77777 55555555555555 777 000 7 0 1 5555 2 9 88 0 2 5 0 4 55555 5555555 00 7 99 666666666666 00 000 88 0
consensus : NNNNTTTTNTNTTGGTGGGTTGCGTNAGCAACTCACCAGTGTTGACATGCGAGA-T-TT-GA-AGCTCCGTCAAAAGN-TGT-AT-ATA-CCTCATAA--CTCAGTGTACCAACACACCAAAA-A--T--AGTGC-AAA-GA-A-ATTCCAAA-AAG----TACATAATGTTAAATATATAAAGACAAAC-AA-CAACTTANTTTAGGTANCC--G-AATAAATTA-T-----ATTCA--T---GT--TTGCTTCAAATGTGT--------------------AAANAGCAT--CTGTTGAATGTAA-TAACATCTGT-TGAATGTA--TAT-------GAAATTACTACGCCATTGAAACC-------TT-NGATCG--------TGT------A-------C---------T----------G-CCT---------A----------T-GAATGAA----AGACACGACGCTGT-------AGCGTG--T---------AT-----------AG------TGTA---T--T-----G----T----CTATAA-ATNGAACAGTA-----GCAGACGATAAAAT-ACTGTTTAC-TA-TACCTTTTAATCTATC--AC--A-T---CATGTATAAGTAATAGTGT--TAGTGAAGGATCCTTTCCCATTATTTTATTAGTTAATTTAAA--AAGGATATATTAATG----TATATAGTCTATAAA------------GGGCTATGCTACAGCTAA-C-ACAAAACTTACT-G-------TGTTACATAGTGCAATNA--CGC--AAACACGCT---T-T---TTTACGCCCTG-CT-TGTG-TATTTCTGATACTACAAATTTATA-CTGTACGATCCNGCCAGAATGTGTNTTGGTCCCGTTATCGCCTGATAGCCATTAAT----TAGATATTGTTTC-AA--------T--------TTG-AACGA-----------------TACCAAATAATTTGCGGCATT----TG----A---AATGCAAGCT---CTGCTTTTATGATGGATTTACCAAATTATATATTATCAATTGTTGT----AAAAAGAGGATCAAAAACTTACTATTGAAA-CTCT-----TTTTAAT---C---ATTA-NAATTGCGAGTTCAAAGTA-----------ACTTAAT--GTG---TA-TATGTCTC-TGGATAAACCAAGT
Reference ( family-2886 ) : NNNNTTTTNTNTTGGTGGGTTGCGTNAGCAACTCACCAGTGTTGACATGCGAGA-T-TT-GA-AGCTCCGTCAAAAGN-TGT-AT-ATA-CCTCATAA--CTCAGTGTACCAACACACCAAAA-A--T--AGTGC-AAA-GA-A-ATTCCAAA-AAG----TACATAATGTTAAATATATAAAGACAAAC-AA-CAACTTANTTTAGGTANCC--G-AATAAATTA-T-----ATTCA--T---GT--TTGCTTCAAATGTGT--------------------AAANAGCAT--CTGTTGAATGTAA-TAACATCTGT-TGAATGTA--TAT-------GAAATTACTACGCCATTGAAACC-------TT-NGATCG--------TGT------A-------C---------T----------G-CCT---------A----------T-GAATGAA----AGACACGACGCTGT-------AGCGTG--T---------AT-----------AG------TGTA---T--T-----G----T----CTATAA-ATNGAACAGTA-----GCAGACGATAAAAT-ACTGTTTAC-TA-TACCTTTTAATCTATC--AC--A-T---CATGTATAAGTAATAGTGT--TAGTGAAGGATCCTTTCCCATTATTTTATTAGTTAATTTAAA--AAGGATATATTAATG----TATATAGTCTATAAA------------GGGCTATGCTACAGCTAA-C-ACAAAACTTACT-G-------TGTTACATAGTGCAATNA--CGC--AAACACGCT---T-T---TTTACGCCCTG-CT-TGTG-TATTTCTGATACTACAAATTTATA-CTGTACGATCCNGCCAGAATGTGTNTTGGTCCCGTTATCGCCTGATAGCCATTAAT----TAGATATTGTTTC-AA------C-T--------TTG-AACGA-----------------TACCAAATAATTTGCGGCATT----TG----A---AACGCAAGCT---CTGCTTTTATGATGGATTTACCAAATTATATATTATCAATTGTTGT----AAAAAGAGGATCAAAAACTTACTATTGAAA-CTCT-----TTTTAAT---C---ATTA-NAATTGCGAGTTCAAAGTA-----------ACTTAAT--GTG---TA-TATGTCTC-TGGATAAACCAAGT
gi|1 : TTTTTTATTGGTGGGTTGCGTTA----CTCAACAGTGTTGACATGCGAGA-T-TT-TG-AGCATAG--ATAAAT-TGTCATAATT-CCTCATAA--CAAAGTGTACCAACACACCAAAA-A--TGAAGTGCAAAA-AA-A-AATCCAAA-AAG----TACACAATGCTCTATACATAAATACAAAT--A-CAACCTATTGTAGATAACC--G-AATATATTATT-----AGTCA-------T--TTG--TCAAATGTTT--------------------GAAAAGCA-------TGAATGTAA--AACAT-TGTATAAAAATT--TG--------GAAATTACTACGCTATT-AAACC-------TG-TGGTCG--------TGG------G-------CTCTGGGATTT----------G-TC---------------------T-GAGTAAATATTATCCATTACAATGTGTCGGAAAGCGCGAAT---------GT-----------AT------TTTA---T--G-----G----T----CTATAC-ATCGAATAGCAAATATGCAGGC-ATGAA---ACT-TTTG--TA-TACCTTTTAATCTAT---------T---CATGTATAAGTAATATTGT--TAGTGTAGGATTATCTCCTA----TTTACTCATTAGTTTAAATGAAAAGTTCATTA-------TATATAGTCTATGA
gi|1 : aatatg-------TGGTATATACTGCAATAA--CAC--AAACACGCT---TAT---TTT----------T-TGTGATATTTCTGATACTAC---TTTACA-CT-TGTTATCCGGCCAGAATATGTATTTGTCCCGTTGATGTATGATAATCATTAATATGATAATTATTATTTgcgtcagaatgcaataagcatacatgaacaacaagtaaccatatcatttaatcaaacaatataaatggtatatactgcaataacacaaacacgcttattttttgtgatatttctgatactactttacacttgttatccggccagaatatgtatttgtcccgttgatgtatgataatcattaatatgataattattatttttcccataatgacgggaaagtttcagtttgacttatcacattaaagaaatagttcgatacattgtaagtatattagagcattgcaatgtgtgtctaaaataaatttcatgaaatgtttcatttcaaattagttgcaattgttgtgaaaagggaatgatactcctttttaaatcattttacttggagttatgaattacgaaatcattgatttcatgtgtattatgtctctaggtaaacc
gi|1 : aatatgttttttattggtgggttgcgttactcaacagtgttgacatgcgagattttgagcatagataaattgtcataattcctcataacaaagtgtaccaacacaccaaaaatgaagtgcaaaaaaaaatccaaaaagtacacaatgctctatacataaatacaaatacaacctattgtagataaccgaatatattattagtcatttgtcaaatgtttgaaaagcatgaatgtaaaacattgtataaaaatttggaaattactacgctattaaacctgtggtcgtgggctctgggatttgtctgagtaaatattatccattacaatgtgtcggaaagcgcgaatgtattttatggtctatacatcgaatagcaaatatgcaggcatgaaacttttgtataccttttaatctattcatgtataagtaatattgttagtgtaggattatctcctatttactcattagtttaaatgaaaagttcattatatatagtctatgagcgtcagaatgcaataagcatacatgaacaacaagtaaccatatcatttaatcaaacaatataaaATTT--CAAATTA---GTTG-CAATTGTTGT----GAAAAGGGAAT--GATACTC-CTTTTTAAA--TCA-----TTTTACT---TGGAGTTATGAATTACGAAATC--ATTG-----------ATTTCAT--GTG---TATTATGTCTC-TAGGTAAACCttcccataatgacgggaaagtttcagtttgacttatcacattaaagaaatagttcgatacattgtaagtatattagagcattgcaatgtgtgtctaaaataaatttcatgaaatgtttcatttcaaattagttgcaattgttgtgaaaagggaatgatactcctttttaaatcattttacttggagttatgaattacgaaatcattgatttcatgtgtattatgtctctaggtaaacc
gi|10 : aatatgttttttattggtgggttgcgttactcaacagtgttgacatgcgagattttgagcatagataaattgtcataattcctcataacaaagtgtaccaacacaccaaaaatgaagtgcaaaaaaaaatccaaaaagtacacaatgctctatacataaatacaaatacaacctattgtagataaccgaatatattattagtcatttgtcaaatgtttgaaaagcatgaatgtaaaacattgtataaaaatttggaaattactacgctattaaacctgtggtcgtgggctctgggatttgtctgagtaaatattatccattacaatgtgtcggaaagcgcgaatgtattttatggtctatacatcgaatagcaaatatgcaggcatgaaacttttgtataccttttaatctattcatgtataagtaatattgttagtgtaggattatctcctatttactcattagtttaaatgaaaagttcattatatatagtctatgagcgtcagaatgcaataagcatacatgaacaacaagtaaccatatcatttaatcaaacaatataaatggtatatactgcaataacacaaacacgcttattttttgtgatatttctgatactactttacacttgttatccggccagaatatgtatttgtcccgttgatgtatgataatcattaatatgataattattatttttcccataatgacgggaaagtttcagtttgacttatcacattaaagaaatagttcgatacattgtaagtatattagagcattgcaatgtgtgtctaaaataaatttcatgaaatgtttcAGA------------GGGCTGTGCTACAGCTAA-CCATAAAACTTGCT-G-------TGTTACATAGTGCAACAG--CGC--AAA----------------TTACGCCCTG-CTGTGTG-TATTTCTGATATTACAAATTTATA-CTGTACG-TTAAGCGAGAATGTGTATTGGCCCTGATATCGCCTGATATCCA----------AGGTA-------------------------------------------------------CCAAATAAT-----GCATG----CA----A---AA--CAAACT---CTGCTTGTATGATGTATTTACCAAACTATATATTAGCAATTATGGT----AAACTGAAGATCAAAAACTTACTATTGGAA-CTCT-----TTTCAAT---C---ATTA-AAATTACGAGTTCA---TA-----------TCTTAAG--GTG---TA-T
gi|11 : GTG-TATTTCTGATACTACAAATATATA-CTATACGATCCAGCCAGAATGTGTATTGGTTCTGTTATCGCCTGATAGCCATTAAT----TAGACATTGCTTC-AAATGTTTCAT--------TGG-AACG------------------TACCAAATAATTTGCGGCATT----TG----AATGAACACATGCT---CTGCTTTTATGATTGATTTACCAAA--ATATATTATCAATTGTTGT----AAGAAGAGGAT-AAAAA----------AAA-CTGT-----TTTTAAT---C---ATTA-AAATTAAGAGTTTAAAGTAATTAAACATTGACTTAAT--GTG---TA-TATGTCTCGTGGATAAGCCAAG
gi|12 : TTTAT----TCAATATT--TTT-A---------T--------TTGTAACG------------------TACCTAATATTTGGCGGCATT----TGCAACA---AATGCAAG------TACTCT-ATGATGGATTTACCAAATGATCTATTATAAAATGGTGTTAAAAAAAAGATGGTAAAAAAAATACTATGAAAA-CTGT-----CTTCCAT---C---ATTA-TAGTTGGGAGTTCAAAGTA-----------
gi|13 : aaagtcatatattttatatttttgatgagttgcgtaagcataaaactgacagtttatgtctgtatgacatttcatgaaatatctttattttaaattcaaacgatactt----------T-GAATGAA----AAAC-TGACGCTGT-------GGTGTA--TCGGAAAGCGAG-----------AG------TATAACAT--T-----G----TAGGCCTGTAA-ATATAACAGTA-----GTAGACGAGAACATGACATTTTAT-TG--AC---TTAAACTAT
gi|14 : gaatggctctggatttaatTAA-C-ACAAA--TAACTAG-------TGT-GCA----GCAGTTATCCGTTTAAAAACG-------T---TTTACACTATGACT-TGTAATATTTCTGATACTACAAATGTATAACT--ACGATCCTACCAGGATGTGTTTTGGTCTCATAATCGGCTGATAGCCAatacagtttatcgtcatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnttaagaggaaacagataaattataatatata
gi|15 : atcaagcatATAAATAAAGATAAA--GA-CAGCTTTTCTTAGGTAACT--A-AATGCATTG-TTAGACATT----T---GA--TCGTATTGAATGTGT--------------------GAAAAGCAT--ATGTTG-CTTTAA-TA-----TAT-TGCA----------------GAAATTACTACGCCAGTGAAatt
gi|16 : aaaataaacactTTTATTTTGGTGGGTTGCGTGAGCAACTTACCAGTGTTTTCATGCAAGATT-TT-GA-GGGTCGGTAAAAA
gi|18 : ---CATGTATAAGTAATAGTGT--T-GTG
gi|2 : tcaataTTTTTTGTTGGTGGATTGCGTTAGCAACTCACCAGAGCTGACATGTGAAA-T-CT-GA-AGCTCCGTCAAAAAACTGT-AT-CTA-CCTCATTA--CTCAGTGTATCAACACACCAAAA-A--T--AGTGC-AAG-TT-A-ATTCCAAA-AAG----TACATACTGTTCAATATATAATGACAAAC-AAACAAATTAATTTAGGTACCC--A-AGTAAATTACT-----ATTTA--T---GTATTTGGTTCAATTGTGT--------------------AAATAGCAT--CTGTTGAATGTAAATAATATCTGC-TAAATGTA--TAT-------GAAATTACTACGCCAATGAAATC-------TT-AGGTTG--------TGT------A-------C--------------------G-CCT---------A----------T-GAATGAG----AGACACAACGCTGT-------AGCGTG--T---------AT-----------AG------TGT----T--T-----G----T----CTATAA-ATTAAACAGTA-----GCAGACAATAAAAT-ACTGTTTAC-TAGTATCCTTTAAACCATCCAGCCAA-T---CATGTATAAGTAATAGAGT--TAGTGAAGGAGCCTTTTCCATTATTTTGTTAGTTAATTTATA--AAGGATATATTAATG----AATATAGTCTATAAA------------GGGCTATGCTAT-GTT----------ACTTACG-G-------TGTTACATAATGCAATAA--CGC--AAACACGTT---T-TCCATTTACACCCTG-CTATGTG-TATTTCTGATACTATAAATTTATA-CTGAACGATCCTGCCGTGATGTGCTTTTGTCCTGTTATCGCCTGATAGTCATTTAT----AAGATATTGTTTT-AA------C-T--------TTG-AACAA-----------------TACCAAATAAT-----ACA------TG----A---AATACAACCT---CTGCTGCTATGGTGGATTTACCAAATTATATTTCATCAATTGTTGT----AAAAAGAGGAT-AAAAATTTACTATTCAAA-CTCT-----TTTTAATCGAC---ATTA-AAATTGCGAGTTC---GTA-----------ACTTAAT--CTG---TA-TATGTTTC-TGGATAAACAAAGTcgtgtaccgtgttgaaaccatttt
gi|3 : tactCACCAGAGTTGACATGTGAAA-T-TT-AA-AGCTGCGTCAAAAG--TGG-AT-ATA-CCTCATCA--ATCAATGTACCAACATACCAAAA-ACAT--AGTGC-AAA-GA-A-TTTCCAAA-AAG----TACATACTATTAAATATATAAAGACAAAT-AAACAACTTA----------------AAT---TCA-T-----ATTTA--TTTTGT--TTGTTTCAAATGTGTAAATAGCATCTGTTGAATGTAAATAACAT--CTGCTGAATGTAAATAACATCTGT-TGAATGTA--TAT-------GAAATTACTACGCCATTGAAATC-------TT-AGAATG--------TGT------A-------C--------------------A-TTT---------A----------T-GAATGAA----AAACACGACGCTGT-------AGCGTC--A---------AT-----------AG------TG-G---T--G-----G----T----CAATAA-ACTGGACAGTA-----GCAGACGACAAAAT-ACTGTTAACTTC-TATTTTTTAATTTAGC--CA--A-T---CATATATAAGTAAAAGTGTGCTA------GATCCTTTCCCATTATGTTATTAGTTAATTTAAA--CA-GATATATTAATG----TATATAGCCTAGA---------------GACTATACTACAGCTAA-CAATAAAACTTATT-G-------TGTTACATGGTGCAATAA--CGC--TAACAC----------------------------GTG-TATTTCTGATACTACATATTTATA-CTGTACGATCCAGCCAAAATGTGTTTTGGTTCTGTTATCGCCTTATAGCCATTAAT----TAGATATTGTTTC-AA------A-T--------TTA-AACGATACTTTTCATTGGAAGGTACCAAATAATTTGCGGCTTTTGCATG----A---AATGAAAGCTCTGCTGCTTTTATGATGAATTTACCAAATTATATATTATCAATTGTTGT----AAAAAAAGGATCAAAAAC-TA-------------T-----TTTCAAT---C---ATTA-AAATTGg
gi|4 : cTGTGAAA-TGTT-GA-AGCTCCGTCAAAAG--TGT-AA-ATA-CATCGTAA--CTCAGTGTACCAACACACCAAAA-ACAT--AGTGC-AAA-GA-A-A--CTAAATAAA----TACATAACGTTAAATATATAAAGACAAATTAA-CAGTTTGATTTAGGTATC---G-AATAAATTAAT-----ATTC---T----T--TTGCTTTAATTGCTT--------------------CAAATGCGT---------A---AA-TAACATCTGT-TGAATGTA--TAT-------AAAATTATTACGCCATTGAAACC-------TT-AGATTGGATACATTTATG-----A-------C---------T----------GGCCC---------AAGCATGTGGTT-GAATGAA----ATACATGGCATTTT-------AACGTG--T---------AG-----------AG------GGTA---G--T-----G----T----TTATTA-ACTGAACAGTA-----GCAAACGATAAAAC-ATTGTTTAC-CAGTATCTTTTAATCTAT---AC--AGT---TATGCATTAATAATAGTGT--TAAAGAAGGATCCTTTCCCATTATTTTACTAGTTAATTTAAA--AATTATATAATTATG----CATATAGCATTTAAA------------GAGCTATGCTACAGCTAATC-ACAAAACTTACT-G-------TGTTACATAGTACAATTA--TGC--AAACACGCT---T-T---T
gi|4 : ATTAAA----T-GATACTTTTTCCAA------A-TATTTGGCATTG-GAGCA-----------------TACCAAATAATTTTCTGCATT----TGCAA-A---AATA-AAGCT---CTGTATTTATGATGGATTTACCAAATTATATATTATCAATT-TTGT----AAAAAAAAGATCAAAACCTTACTATTGAAACCTTT-----TTTTAAT---C---ATTT-CAATTGCGAGTTCAAAGTA-----------Acgcaaattaaatgatactttttccaaatatttggcattggagcataccaaataattttctgcatttgcaaaaataaagctctgtatttatgatggatttaccaaattatatattatcaattttgtaaaaaaaagatcaaaaccttactattgaaacctttttttaatcatttcaattgcgagttcaaagtaataaaacattga
gi|5 : tgtgaaatgttgaagctccgtcaaaagtgtaaatacatcgtaactcagtgtaccaacacaccaaaaacatagtgcaaagaaactaaataaatacataacgttaaatatataaagacaaattaacagtttgatttaggtatcgaataaattaatattcttttgctttaattgcttcaaatgcgtaaataacatctgttgaatgtatataaaattattacgccattgaaaccttagattggatacatttatgactggcccaagcatgtggttgaatgaaatacatggcattttaacgtgtagagggtagtgtttattaactgaacagtagcaaacgataaaacattgtttaccagtatcttttaatctatacagttatgcattaataatagtgttaaagaaggatcctttcccattattttactagttaatttaaaaattatataattatgcatatagcatttaaagagctatgctacagctaatcacaaaacttactgtgttacatagtacaattatgcaaacacgcttttcgcaaTTTGTTTTCATAGATTGCATAAGCAACTCACCCGTTTTGACTTTCGATG-TGCT-AA-AGC-ACGGCAAAATG-TGC-AT-ATA-CCTCACAACCCTCCGTGTACTAACACATCAAAATA--C--CGTGC-AAAGGA-A-ATT--GAA-AGGAATATATATACTGTTAAATATATAAGGACAAAC--A-CAAC-TAATTTGAGTAACCCTG-AAC--ATT---------------T---AT--TTGCTTCAAATGTAT--------------------AA-----AT--GTGTTTAATGTTA-TA-----TTT-CG------------------GAAATTATCACGCCGTCGAAACA-------TG-TAACCG--------TGT------ATATAAGGT---------T----------G-GCTTG-------AATTTAAT---T-AAATGAA----AGAC-------------------------T---------AC-----------AG------TGTA---T-------------------CAGAAGGCGGGACAATA-----GCCGTCGATCAAAT-ACT-TTT------TACCTTGTA------------------------ATAGGTGATAGTGT--TAGTGCTGGATTCTTTCCCATTGTTTAATAAG--GAT---AT--AAGGATATATTAATG----TACATAGTATATAAGTCAGAATTCAATGGGCTATACTACAACTAACC-ACGATACTAACT-GAATCTTATATTATATACCGCAATTA--Ctaaaacattga
gi|6 : atcGCTTTAAG-ATGT--------------------AAATAGCAT--CTTTTGAATGTAa
gi|6 : taataaatataagagaatacaacccaaactctatcattcactactggctaccctctcatataagttagcatatatgaaaactcacagatctgtggtaATGTAAATAGCATCTTT-TGAATGTA--TAT-------GAAATTACTACGCAATTGAAACT-------TT-GGATTG--------TGT------A-------T---------TTTTATGATTGG-CCCTGGAATGTGA----------TTGAATGAA----AGACCCGACGCTGT-------AGCGTG--T---------AT-----------AG------TGTA---G--G-----G----T----CTATAA-ATTGAACAGTA-----GCAGACGATAAAAT-ACTGTTTAC-TAGTACATTTTAATATAT---AC--A-TGTACGTGTATAAGTAATAAGGT--AAGAGAAGGATCCTTTCCCATTATTTTATTAGTTTCTTTAAA--AAGGATATATTATTGTAAATATATAGTCTATAAA------------GGGCTATGCTACAACTAACC-ACAACACTTAC----------TGTTAAATAGTGCAGTTA--TGC--AAACACGCTTTCT-T---CTTACGCCCTG-TT-tatgaaattactacgcaattgaaactttggattgtgtatttttatgattggccctggaatgtgattgaatgaaagacccgacgctgtagcgtgtatagtgtagggtctataaattgaacagtagcagacgataaaatactgtttactagtacattttaatatatacatgtacgtgtataagtaataaggtaagagaaggatcctttcccattattttattagtttctttaaaaaggatatattattgtaaatatatagtctataaagggctatgctacaactaaccacaacacttactgttaaatagtgcagttatgcaaacacgctttcttcttacgccctgttg
gi|7 : taataaatataagagaatacaacccaaactctatcattcactactggctaccctctcatataagttagcatatatgaaaactcacagatctgtggtagctttaagACTCATCAGTGTTAATATGTGGAA-T-TTCGA-ACCTC-GCTAAAAGG--GT-AG-ATA-CCTTATAA--CTCAGTGCACCAACGCATCAAAA-A--TGTAGTGC-AAG-GACA-ATTCCAAA-AAG----TACATAATGTTCAATATATAAAGACAAAC--A-TAGCTTGTTTTGTGTACCC--G-AATAAATTA-CA----AGTCA--T---TTGATTGGTTCAAGTCTGTG-------------------AAAAAGCATGACTATTG---------------TGT-TGAATGTATTTATATTTTCGGAAATTACTACGCCATTGAAACCAATGTGGTTATGAT-G--------GGTTCTCAAA-------T---------T----------T-TCT--------------------T-GAATGAA----AGACA-----CTAT-------AGCGTA--TCGA------AA-----------AGCGGGACTGTA---T--TTCAGAG----T----CTTAAA-ATAGAAGAAAA-----GCAGACGAT---AT-ATT-TTTGT-TA--ACCTTGTAATC---C--AC--A-----CATGTTAAAGTAATGGTGT--TAGTAAATGATCGTTTCCCATTg
gi|8 : CCAGTATTAAAATGTGAGA-T-TT-TTTAGCGC-GTTAAA-GT-TGT-AA-AAAACCTCATAA--CTCAGTGTACCAACTCACAAAAAGA--C--AGTTC-AAA-GA-ACATTCCAGA-AAC----TACAAAAAGTTAAATATAAAAGGCCAAAC--A-TAACTTA-TTGAGGTATCT--GAAATAAATAT-T-----AGTCATCT---GG--TTACTTCAAATGTGT----------------------------------TTAAATGTA-------------TAAATATAT-TTT-------GAAATCACTACGCTATTGAAACA-------TG-TGACCA--------TGT------A-------T---------T------------CAT--------------------T-GAATGAA----TGA-ATTGCACTGT-------G--GTG--T---------ATCCTAAAGCGGGAG------TGTA---TGCT-----GTTGAT----CTATAA-ATAGAACAGTA-----GCAGACGAGAAA--------------------TTGTAATCAAT---A---------CATGTATAAGTAATAGTGT--T
gi|9 : ----A---AATGCAAGCT---GTGCTTTATTGATGGATTTACCAAAGTATATAATATCAATTGGTGTAG--AGAAAGATGATCCAAAACTTGCTATTGAAA-CTCTTATCCTTTTAAT---C---ATTA-TATTTGGGATTTTAAAGTA-------------TAAATCAGTGACTTA--GTATCTT-TGGATAAACCAAGTgt
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|17 ): ACGGTAGATTGTGCATATATAACACAACGCTCGCTATCACGCGTGCTAAATCAAAATACCGT
Alignments
lowQualScore : 111111111111111111111111111111111111111111111111111111111111 111111111111111111111111111111111111111111111111
lowQualScore : 1 111 11 2222222 1111 22222 1 11111 55555555555555555555555 5555555555555555555555555555555555555555555555555555 222222222222 1111111 11111111 444444444444444444444444444444444444444444444444444444444444 111 1111111 55555555555555555555555555555555555555555555555555555555 11111 1 2222222 5555555555555 1111 333333333333 222 1111111111 444444444444444444444444444 1 1111 111111111111111111111111111111111111111111111111 11111 22222222222222 111 1111 1 11111 333333333333 11 111 1
lowQualScore : 1 1 1 2 1 5 0 6666 000 22 77 5 77 5 77 9999999 5 5 5 5 1 5 2222 1 1 55555 0 2 22222 88 66666666666666666666666 4 0 0000000000000000000000000000000000000000000000000000 0 4 2 444444444444 6666666 66 4 88888888 000000000000000000000000000000000000000000000000000000000000 4 9999 222 0 4444444 0 66 00000000000000000000000000000000000000000000000000000000 4 1 11111 0 1 4 2 8888888 2 3 5555555555555 66 0 1 99 5 3 4444 0 444444444444 222 1 7777777777 1 1 66 77 0 333333333333333333333333333 3 6 9 1 1 0 1 2222 1 6 222222222222222222222222222222222222222222222222 33333 33333333333333 111 000 1 2 0 7777 0 1 44 2 0 4 5 1 22222 9999999 66 0 99 000000000000 11 444 88 0
lowQualScore : . . . . . . . .... ... .. .. . .. . .. ....... . . . . . . .... . . ..... . . ..... .. ....................... . . .................................................... . . . ............ ....... .. . ........ ............................................................ . .... ... . ....... . .. ........................................................ . . ..... . . . . ....... . . ............. .. . . .. . . .... . ............ ... . .......... . . .. .. . ........................... . . . . . . . .... . . ................................................ ..... .............. ... ... . . . .... . . .. . . . . . ..... ....... .. . .. ............ .. ... .. .
lowQualScore : 0 0 0 5 1 0 0 4444 444 22 99 7 66 7 99 1111111 7 7 7 7 7 7 1111 3 3 66666 8 8 44444 44 44444444444444444444444 7 1 4444444444444444444444444444444444444444444444444444 1 4 0 000000000000 2222222 00 2 11111111 111111111111111111111111111111111111111111111111111111111111 4 4444 999 9 4444444 1 11 77777777777777777777777777777777777777777777777777777777 4 0 11111 8 9 4 2 1111111 9 7 3333333333333 11 5 6 22 2 5 2222 1 222222222222 111 6 0000000000 4 0 99 99 7 888888888888888888888888888 3 7 3 0 0 7 9 1111 4 6 555555555555555555555555555555555555555555555555 77777 55555555555555 333 000 7 0 1 5555 2 9 88 0 2 5 0 4 55555 5555555 00 7 99 666666666666 00 000 88 0
consensus : NNNNTTTTNTNTTGGTGGGTTGCGTNAGCAACTCACCAGTGTTGACATGCGAGA-T-TT-GA-AGCTCCGTCAAAAGN-TGT-AT-ATA-CCTCATAA--CTCAGTGTACCAACACACCAAAA-A--T--AGTGC-AAA-GA-A-ATTCCAAA-AAG----TACATAATGTTAAATATATAAAGACAAAC-AA-CAACTTANTTTAGGTANCC--G-AATAAATTA-T-----ATTCA--T---GT--TTGCTTCAAATGTGT--------------------AAANAGCAT--CTGTTGAATGTAA-TAACATCTGT-TGAATGTA--TAT-------GAAATTACTACGCCATTGAAACC-------TT-NGATCG--------TGT------A-------C---------T----------G-CCT---------A----------T-GAATGAA----AGACACGACGCTGT-------AGCGTG--T---------AT-----------AG------TGTA---T--T-----G----T----CTATAA-ATNGAACAGTA-----GCAGACGATAAAAT-ACTGTTTAC-TA-TACCTTTTAATCTATC--AC--A-T---CATGTATAAGTAATAGTGT--TAGTGAAGGATCCTTTCCCATTATTTTATTAGTTAATTTAAA--AAGGATATATTAATG----TATATAGTCTATAAA------------GGGCTATGCTACAGCTAA-C-ACAAAACTTACT-G-------TGTTACATAGTGCAATNA--CGC--AAACACGCT---T-T---TTTACGCCCTG-CT-TGTG-TATTTCTGATACTACAAATTTATA-CTGTACGATCCNGCCAGAATGTGTNTTGGTCCCGTTATCGCCTGATAGCCATTAAT----TAGATATTGTTTC--AA---T--------TT-----G-AACGA-----------------TACCAAATAATTTGCGGCATT----TG----A---AATGCAAGCT---CTGCTTTTATGATGGATTTACCAAATTATATATTATCAATTGTTGT----AAAAAGAGGATCAAAAACTTACTATTGAAA-CTCT-----TTTTAAT---C---ATTA-NAATTGCGAGTTCAAAGTA-----------ACTTAAT--GTG---TA-TATGTCTC-TGGATAAACCAAGT
Reference ( family-2886 ) : NNNNTTTTNTNTTGGTGGGTTGCGTNAGCAACTCACCAGTGTTGACATGCGAGA-T-TT-GA-AGCTCCGTCAAAAGN-TGT-AT-ATA-CCTCATAA--CTCAGTGTACCAACACACCAAAA-A--T--AGTGC-AAA-GA-A-ATTCCAAA-AAG----TACATAATGTTAAATATATAAAGACAAAC-AA-CAACTTANTTTAGGTANCC--G-AATAAATTA-T-----ATTCA--T---GT--TTGCTTCAAATGTGT--------------------AAANAGCAT--CTGTTGAATGTAA-TAACATCTGT-TGAATGTA--TAT-------GAAATTACTACGCCATTGAAACC-------TT-NGATCG--------TGT------A-------C---------T----------G-CCT---------A----------T-GAATGAA----AGACACGACGCTGT-------AGCGTG--T---------AT-----------AG------TGTA---T--T-----G----T----CTATAA-ATNGAACAGTA-----GCAGACGATAAAAT-ACTGTTTAC-TA-TACCTTTTAATCTATC--AC--A-T---CATGTATAAGTAATAGTGT--TAGTGAAGGATCCTTTCCCATTATTTTATTAGTTAATTTAAA--AAGGATATATTAATG----TATATAGTCTATAAA------------GGGCTATGCTACAGCTAA-C-ACAAAACTTACT-G-------TGTTACATAGTGCAATNA--CGC--AAACACGCT---T-T---TTTACGCCCTG-CT-TGTG-TATTTCTGATACTACAAATTTATA-CTGTACGATCCNGCCAGAATGTGTNTTGGTCCCGTTATCGCCTGATAGCCATTAAT----TAGATATTGTTTC--AA---T--------TT-----G-AACGA-----------------TACCAAATAATTTGCGGCATT----TG----A---AATGCAAGCT---CTGCTTTTATGATGGATTTACCAAATTATATATTATCAATTGTTGT----AAAAAGAGGATCAAAAACTTACTATTGAAA-CTCT-----TTTTAAT---C---ATTA-NAATTGCGAGTTCAAAGTA-----------ACTTAAT--GTG---TA-TATGTCTC-TGGATAAACCAAGT
gi|1 : TTTTTTATTGGTGGGTTGCGTTA----CTCAACAGTGTTGACATGCGAGA-T-TT-TG-AGCATAG--ATAAAT-TGTCATAATT-CCTCATAA--CAAAGTGTACCAACACACCAAAA-A--TGAAGTGCAAAA-AA-A-AATCCAAA-AAG----TACACAATGCTCTATACATAAATACAAAT--A-CAACCTATTGTAGATAACC--G-AATATATTATT-----AGTCA-------T--TTG--TCAAATGTTT--------------------GAAAAGCA-------TGAATGTAA--AACAT-TGTATAAAAATT--TG--------GAAATTACTACGCTATT-AAACC-------TG-TGGTCG--------TGG------G-------CTCTGGGATTT----------G-TC---------------------T-GAGTAAATATTATCCATTACAATGTGTCGGAAAGCGCGAAT---------GT-----------AT------TTTA---T--G-----G----T----CTATAC-ATCGAATAGCAAATATGCAGGC-ATGAA---ACT-TTTG--TA-TACCTTTTAATCTAT---------T---CATGTATAAGTAATATTGT--TAGTGTAGGATTATCTCCTA----TTTACTCATTAGTTTAAATGAAAAGTTCATTA-------TATATAGTCTATGA
gi|1 : aatatg-------TGGTATATACTGCAATAA--CAC--AAACACGCT---TAT---TTT----------T-TGTGATATTTCTGATACTAC---TTTACA-CT-TGTTATCCGGCCAGAATATGTATTTGTCCCGTTGATGTATGATAATCATTAATATGATAATTATTATTTgcgtcagaatgcaataagcatacatgaacaacaagtaaccatatcatttaatcaaacaatataaatggtatatactgcaataacacaaacacgcttattttttgtgatatttctgatactactttacacttgttatccggccagaatatgtatttgtcccgttgatgtatgataatcattaatatgataattattatttttcccataatgacgggaaagtttcagtttgacttatcacattaaagaaatagttcgatacattgtaagtatattagagcattgcaatgtgtgtctaaaataaatttcatgaaatgtttcatttcaaattagttgcaattgttgtgaaaagggaatgatactcctttttaaatcattttacttggagttatgaattacgaaatcattgatttcatgtgtattatgtctctaggtaaacc
gi|1 : aatatgttttttattggtgggttgcgttactcaacagtgttgacatgcgagattttgagcatagataaattgtcataattcctcataacaaagtgtaccaacacaccaaaaatgaagtgcaaaaaaaaatccaaaaagtacacaatgctctatacataaatacaaatacaacctattgtagataaccgaatatattattagtcatttgtcaaatgtttgaaaagcatgaatgtaaaacattgtataaaaatttggaaattactacgctattaaacctgtggtcgtgggctctgggatttgtctgagtaaatattatccattacaatgtgtcggaaagcgcgaatgtattttatggtctatacatcgaatagcaaatatgcaggcatgaaacttttgtataccttttaatctattcatgtataagtaatattgttagtgtaggattatctcctatttactcattagtttaaatgaaaagttcattatatatagtctatgagcgtcagaatgcaataagcatacatgaacaacaagtaaccatatcatttaatcaaacaatataaaATTT--CAAATTA---GTTG-CAATTGTTGT----GAAAAGGGAAT--GATACTC-CTTTTTAAA--TCA-----TTTTACT---TGGAGTTATGAATTACGAAATC--ATTG-----------ATTTCAT--GTG---TATTATGTCTC-TAGGTAAACCttcccataatgacgggaaagtttcagtttgacttatcacattaaagaaatagttcgatacattgtaagtatattagagcattgcaatgtgtgtctaaaataaatttcatgaaatgtttcatttcaaattagttgcaattgttgtgaaaagggaatgatactcctttttaaatcattttacttggagttatgaattacgaaatcattgatttcatgtgtattatgtctctaggtaaacc
gi|10 : aatatgttttttattggtgggttgcgttactcaacagtgttgacatgcgagattttgagcatagataaattgtcataattcctcataacaaagtgtaccaacacaccaaaaatgaagtgcaaaaaaaaatccaaaaagtacacaatgctctatacataaatacaaatacaacctattgtagataaccgaatatattattagtcatttgtcaaatgtttgaaaagcatgaatgtaaaacattgtataaaaatttggaaattactacgctattaaacctgtggtcgtgggctctgggatttgtctgagtaaatattatccattacaatgtgtcggaaagcgcgaatgtattttatggtctatacatcgaatagcaaatatgcaggcatgaaacttttgtataccttttaatctattcatgtataagtaatattgttagtgtaggattatctcctatttactcattagtttaaatgaaaagttcattatatatagtctatgagcgtcagaatgcaataagcatacatgaacaacaagtaaccatatcatttaatcaaacaatataaatggtatatactgcaataacacaaacacgcttattttttgtgatatttctgatactactttacacttgttatccggccagaatatgtatttgtcccgttgatgtatgataatcattaatatgataattattatttttcccataatgacgggaaagtttcagtttgacttatcacattaaagaaatagttcgatacattgtaagtatattagagcattgcaatgtgtgtctaaaataaatttcatgaaatgtttcAGA------------GGGCTGTGCTACAGCTAA-CCATAAAACTTGCT-G-------TGTTACATAGTGCAACAG--CGC--AAA----------------TTACGCCCTG-CTGTGTG-TATTTCTGATATTACAAATTTATA-CTGTACG-TTAAGCGAGAATGTGTATTGGCCCTGATATCGCCTGATATCCA----------AGGT--------------------------------------------------------ACCAAATAAT-----GCATG----CA----A---AA--CAAACT---CTGCTTGTATGATGTATTTACCAAACTATATATTAGCAATTATGGT----AAACTGAAGATCAAAAACTTACTATTGGAA-CTCT-----TTTCAAT---C---ATTA-AAATTACGAGTTCA---TA-----------TCTTAAG--GTG---TA-T
gi|11 : GTG-TATTTCTGATACTACAAATATATA-CTATACGATCCAGCCAGAATGTGTATTGGTTCTGTTATCGCCTGATAGCCATTAAT----TAGACATTGCTTC--AAATGT--------TTCATTGG-AACG------------------TACCAAATAATTTGCGGCATT----TG----AATGAACACATGCT---CTGCTTTTATGATTGATTTACCAAA--ATATATTATCAATTGTTGT----AAGAAGAGGAT-AAAAA----------AAA-CTGT-----TTTTAAT---C---ATTA-AAATTAAGAGTTTAAAGTAATTAAACATTGACTTAAT--GTG---TA-TATGTCTCGTGGATAAGCCAAG
gi|12 : TTTAT----TCAATATT-TTT----A---T--------TT-----GTAACG------------------TACCTAATATTTGGCGGCATT----TGCAACA---AATGCAAG------TACTCT-ATGATGGATTTACCAAATGATCTATTATAAAATGGTGTTAAAAAAAAGATGGTAAAAAAAATACTATGAAAA-CTGT-----CTTCCAT---C---ATTA-TAGTTGGGAGTTCAAAGTA-----------
gi|13 : aaagtcatatattttatatttttgatgagttgcgtaagcataaaactgacagtttatgtctgtatgacatttcatgaaatatctttattttaaattcaaacgatactt----------T-GAATGAA----AAAC-TGACGCTGT-------GGTGTA--TCGGAAAGCGAG-----------AG------TATAACAT--T-----G----TAGGCCTGTAA-ATATAACAGTA-----GTAGACGAGAACATGACATTTTAT-TG--AC---TTAAACTAT
gi|14 : gaatggctctggatttaatTAA-C-ACAAA--TAACTAG-------TGT-GCA----GCAGTTATCCGTTTAAAAACG-------T---TTTACACTATGACT-TGTAATATTTCTGATACTACAAATGTATAACT--ACGATCCTACCAGGATGTGTTTTGGTCTCATAATCGGCTGATAGCCAatacagtttatcgtcatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnttaagaggaaacagataaattataatatata
gi|15 : atcaagcatATAAATAAAGATAAA--GA-CAGCTTTTCTTAGGTAACT--A-AATGCATTG-TTAGACATT----T---GA--TCGTATTGAATGTGT--------------------GAAAAGCAT--ATGTTG-CTTTAA-TA-----TAT-TGCA----------------GAAATTACTACGCCAGTGAAatt
gi|16 : aaaataaacactTTTATTTTGGTGGGTTGCGTGAGCAACTTACCAGTGTTTTCATGCAAGATT-TT-GA-GGGTCGGTAAAAA
gi|18 : ---CATGTATAAGTAATAGTGT--T-GTG
gi|2 : tcaataTTTTTTGTTGGTGGATTGCGTTAGCAACTCACCAGAGCTGACATGTGAAA-T-CT-GA-AGCTCCGTCAAAAAACTGT-AT-CTA-CCTCATTA--CTCAGTGTATCAACACACCAAAA-A--T--AGTGC-AAG-TT-A-ATTCCAAA-AAG----TACATACTGTTCAATATATAATGACAAAC-AAACAAATTAATTTAGGTACCC--A-AGTAAATTACT-----ATTTA--T---GTATTTGGTTCAATTGTGT--------------------AAATAGCAT--CTGTTGAATGTAAATAATATCTGC-TAAATGTA--TAT-------GAAATTACTACGCCAATGAAATC-------TT-AGGTTG--------TGT------A-------C--------------------G-CCT---------A----------T-GAATGAG----AGACACAACGCTGT-------AGCGTG--T---------AT-----------AG------TGT----T--T-----G----T----CTATAA-ATTAAACAGTA-----GCAGACAATAAAAT-ACTGTTTAC-TAGTATCCTTTAAACCATCCAGCCAA-T---CATGTATAAGTAATAGAGT--TAGTGAAGGAGCCTTTTCCATTATTTTGTTAGTTAATTTATA--AAGGATATATTAATG----AATATAGTCTATAAA------------GGGCTATGCTAT-GTT----------ACTTACG-G-------TGTTACATAATGCAATAA--CGC--AAACACGTT---T-TCCATTTACACCCTG-CTATGTG-TATTTCTGATACTATAAATTTATA-CTGAACGATCCTGCCGTGATGTGCTTTTGTCCTGTTATCGCCTGATAGTCATTTAT----AAGATATTGTTTT--AAC--T--------TT-----G-AACAA-----------------TACCAAATAAT-----ACA------TG----A---AATACAACCT---CTGCTGCTATGGTGGATTTACCAAATTATATTTCATCAATTGTTGT----AAAAAGAGGAT-AAAAATTTACTATTCAAA-CTCT-----TTTTAATCGAC---ATTA-AAATTGCGAGTTC---GTA-----------ACTTAAT--CTG---TA-TATGTTTC-TGGATAAACAAAGTcgtgtaccgtgttgaaaccatttt
gi|3 : tactCACCAGAGTTGACATGTGAAA-T-TT-AA-AGCTGCGTCAAAAG--TGG-AT-ATA-CCTCATCA--ATCAATGTACCAACATACCAAAA-ACAT--AGTGC-AAA-GA-A-TTTCCAAA-AAG----TACATACTATTAAATATATAAAGACAAAT-AAACAACTTA----------------AAT---TCA-T-----ATTTA--TTTTGT--TTGTTTCAAATGTGTAAATAGCATCTGTTGAATGTAAATAACAT--CTGCTGAATGTAAATAACATCTGT-TGAATGTA--TAT-------GAAATTACTACGCCATTGAAATC-------TT-AGAATG--------TGT------A-------C--------------------A-TTT---------A----------T-GAATGAA----AAACACGACGCTGT-------AGCGTC--A---------AT-----------AG------TG-G---T--G-----G----T----CAATAA-ACTGGACAGTA-----GCAGACGACAAAAT-ACTGTTAACTTC-TATTTTTTAATTTAGC--CA--A-T---CATATATAAGTAAAAGTGTGCTA------GATCCTTTCCCATTATGTTATTAGTTAATTTAAA--CA-GATATATTAATG----TATATAGCCTAGA---------------GACTATACTACAGCTAA-CAATAAAACTTATT-G-------TGTTACATGGTGCAATAA--CGC--TAACAC----------------------------GTG-TATTTCTGATACTACATATTTATA-CTGTACGATCCAGCCAAAATGTGTTTTGGTTCTGTTATCGCCTTATAGCCATTAAT----TAGATATTGTTTCA-AA---T--------TT-----A-AACGATACTTTTCATTGGAAGGTACCAAATAATTTGCGGCTTTTGCATG----A---AATGAAAGCTCTGCTGCTTTTATGATGAATTTACCAAATTATATATTATCAATTGTTGT----AAAAAAAGGATCAAAAAC-TA-------------T-----TTTCAAT---C---ATTA-AAATTGg
gi|4 : cTGTGAAA-TGTT-GA-AGCTCCGTCAAAAG--TGT-AA-ATA-CATCGTAA--CTCAGTGTACCAACACACCAAAA-ACAT--AGTGC-AAA-GA-A-A--CTAAATAAA----TACATAACGTTAAATATATAAAGACAAATTAA-CAGTTTGATTTAGGTATC---G-AATAAATTAAT-----ATTC---T----T--TTGCTTTAATTGCTT--------------------CAAATGCGT---------A---AA-TAACATCTGT-TGAATGTA--TAT-------AAAATTATTACGCCATTGAAACC-------TT-AGATTGGATACATTTATG-----A-------C---------T----------GGCCC---------AAGCATGTGGTT-GAATGAA----ATACATGGCATTTT-------AACGTG--T---------AG-----------AG------GGTA---G--T-----G----T----TTATTA-ACTGAACAGTA-----GCAAACGATAAAAC-ATTGTTTAC-CAGTATCTTTTAATCTAT---AC--AGT---TATGCATTAATAATAGTGT--TAAAGAAGGATCCTTTCCCATTATTTTACTAGTTAATTTAAA--AATTATATAATTATG----CATATAGCATTTAAA------------GAGCTATGCTACAGCTAATC-ACAAAACTTACT-G-------TGTTACATAGTACAATTA--TGC--AAACACGCT---T-T---T
gi|4 : ATTAAA----T-GATACTTTTTCCAAA---TATTTGGCATT-----G-GAGCA-----------------TACCAAATAATTTTCTGCATT----TGCAA-A---AATA-AAGCT---CTGTATTTATGATGGATTTACCAAATTATATATTATCAATT-TTGT----AAAAAAAAGATCAAAACCTTACTATTGAAACCTTT-----TTTTAAT---C---ATTT-CAATTGCGAGTTCAAAGTA-----------Acgcaaattaaatgatactttttccaaatatttggcattggagcataccaaataattttctgcatttgcaaaaataaagctctgtatttatgatggatttaccaaattatatattatcaattttgtaaaaaaaagatcaaaaccttactattgaaacctttttttaatcatttcaattgcgagttcaaagtaataaaacattga
gi|5 : tgtgaaatgttgaagctccgtcaaaagtgtaaatacatcgtaactcagtgtaccaacacaccaaaaacatagtgcaaagaaactaaataaatacataacgttaaatatataaagacaaattaacagtttgatttaggtatcgaataaattaatattcttttgctttaattgcttcaaatgcgtaaataacatctgttgaatgtatataaaattattacgccattgaaaccttagattggatacatttatgactggcccaagcatgtggttgaatgaaatacatggcattttaacgtgtagagggtagtgtttattaactgaacagtagcaaacgataaaacattgtttaccagtatcttttaatctatacagttatgcattaataatagtgttaaagaaggatcctttcccattattttactagttaatttaaaaattatataattatgcatatagcatttaaagagctatgctacagctaatcacaaaacttactgtgttacatagtacaattatgcaaacacgcttttcgcaaTTTGTTTTCATAGATTGCATAAGCAACTCACCCGTTTTGACTTTCGATG-TGCT-AA-AGC-ACGGCAAAATG-TGC-AT-ATA-CCTCACAACCCTCCGTGTACTAACACATCAAAATA--C--CGTGC-AAAGGA-A-ATT--GAA-AGGAATATATATACTGTTAAATATATAAGGACAAAC--A-CAAC-TAATTTGAGTAACCCTG-AAC--ATT---------------T---AT--TTGCTTCAAATGTAT--------------------AA-----AT--GTGTTTAATGTTA-TA-----TTT-CG------------------GAAATTATCACGCCGTCGAAACA-------TG-TAACCG--------TGT------ATATAAGGT---------T----------G-GCTTG-------AATTTAAT---T-AAATGAA----AGAC-------------------------T---------AC-----------AG------TGTA---T-------------------CAGAAGGCGGGACAATA-----GCCGTCGATCAAAT-ACT-TTT------TACCTTGTA------------------------ATAGGTGATAGTGT--TAGTGCTGGATTCTTTCCCATTGTTTAATAAG--GAT---AT--AAGGATATATTAATG----TACATAGTATATAAGTCAGAATTCAATGGGCTATACTACAACTAACC-ACGATACTAACT-GAATCTTATATTATATACCGCAATTA--Ctaaaacattga
gi|6 : atcGCTTTAAG-ATGT--------------------AAATAGCAT--CTTTTGAATGTAa
gi|6 : taataaatataagagaatacaacccaaactctatcattcactactggctaccctctcatataagttagcatatatgaaaactcacagatctgtggtaATGTAAATAGCATCTTT-TGAATGTA--TAT-------GAAATTACTACGCAATTGAAACT-------TT-GGATTG--------TGT------A-------T---------TTTTATGATTGG-CCCTGGAATGTGA----------TTGAATGAA----AGACCCGACGCTGT-------AGCGTG--T---------AT-----------AG------TGTA---G--G-----G----T----CTATAA-ATTGAACAGTA-----GCAGACGATAAAAT-ACTGTTTAC-TAGTACATTTTAATATAT---AC--A-TGTACGTGTATAAGTAATAAGGT--AAGAGAAGGATCCTTTCCCATTATTTTATTAGTTTCTTTAAA--AAGGATATATTATTGTAAATATATAGTCTATAAA------------GGGCTATGCTACAACTAACC-ACAACACTTAC----------TGTTAAATAGTGCAGTTA--TGC--AAACACGCTTTCT-T---CTTACGCCCTG-TT-tatgaaattactacgcaattgaaactttggattgtgtatttttatgattggccctggaatgtgattgaatgaaagacccgacgctgtagcgtgtatagtgtagggtctataaattgaacagtagcagacgataaaatactgtttactagtacattttaatatatacatgtacgtgtataagtaataaggtaagagaaggatcctttcccattattttattagtttctttaaaaaggatatattattgtaaatatatagtctataaagggctatgctacaactaaccacaacacttactgttaaatagtgcagttatgcaaacacgctttcttcttacgccctgttg
gi|7 : taataaatataagagaatacaacccaaactctatcattcactactggctaccctctcatataagttagcatatatgaaaactcacagatctgtggtagctttaagACTCATCAGTGTTAATATGTGGAA-T-TTCGA-ACCTC-GCTAAAAGG--GT-AG-ATA-CCTTATAA--CTCAGTGCACCAACGCATCAAAA-A--TGTAGTGC-AAG-GACA-ATTCCAAA-AAG----TACATAATGTTCAATATATAAAGACAAAC--A-TAGCTTGTTTTGTGTACCC--G-AATAAATTA-CA----AGTCA--T---TTGATTGGTTCAAGTCTGTG-------------------AAAAAGCATGACTATTG---------------TGT-TGAATGTATTTATATTTTCGGAAATTACTACGCCATTGAAACCAATGTGGTTATGAT-G--------GGTTCTCAAA-------T---------T----------T-TCT--------------------T-GAATGAA----AGACA-----CTAT-------AGCGTA--TCGA------AA-----------AGCGGGACTGTA---T--TTCAGAG----T----CTTAAA-ATAGAAGAAAA-----GCAGACGAT---AT-ATT-TTTGT-TA--ACCTTGTAATC---C--AC--A-----CATGTTAAAGTAATGGTGT--TAGTAAATGATCGTTTCCCATTg
gi|8 : CCAGTATTAAAATGTGAGA-T-TT-TTTAGCGC-GTTAAA-GT-TGT-AA-AAAACCTCATAA--CTCAGTGTACCAACTCACAAAAAGA--C--AGTTC-AAA-GA-ACATTCCAGA-AAC----TACAAAAAGTTAAATATAAAAGGCCAAAC--A-TAACTTA-TTGAGGTATCT--GAAATAAATAT-T-----AGTCATCT---GG--TTACTTCAAATGTGT----------------------------------TTAAATGTA-------------TAAATATAT-TTT-------GAAATCACTACGCTATTGAAACA-------TG-TGACCA--------TGT------A-------T---------T------------CAT--------------------T-GAATGAA----TGA-ATTGCACTGT-------G--GTG--T---------ATCCTAAAGCGGGAG------TGTA---TGCT-----GTTGAT----CTATAA-ATAGAACAGTA-----GCAGACGAGAAA--------------------TTGTAATCAAT---A---------CATGTATAAGTAATAGTGT--T
gi|9 : ----A---AATGCAAGCT---GTGCTTTATTGATGGATTTACCAAAGTATATAATATCAATTGGTGTAG--AGAAAGATGATCCAAAACTTGCTATTGAAA-CTCTTATCCTTTTAAT---C---ATTA-TATTTGGGATTTTAAAGTA-------------TAAATCAGTGACTTA--GTATCTT-TGGATAAACCAAGTgt
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|17 ): ACGGTAGATTGTGCATATATAACACAACGCTCGCTATCACGCGTGCTAAATCAAAATACCGT
Alignments
lowQualScore : 111111111111111111111111111111111111111111111111111111111111 111111111111111111111111111111111111111111111111
lowQualScore : 1 111 11 2222222 1111 22222 1 11111 55555555555555555555555 5555555555555555555555555555555555555555555555555555 222222222222 1111111 11111111 444444444444444444444444444444444444444444444444444444444444 111 1111111 55555555555555555555555555555555555555555555555555555555 11111 1 2222222 5555555555555 1111 333333333333 222 1111111111 444444444444444444444444444 1 1111 111111111111111111111111111111111111111111111111 11111 22222222222222 111 1111 1 11111 333333333333 11 111 1
lowQualScore : 1 1 1 2 1 5 0 6666 000 22 77 5 77 5 77 9999999 5 5 5 5 1 5 2222 1 1 55555 0 2 22222 88 66666666666666666666666 4 0 0000000000000000000000000000000000000000000000000000 0 4 2 444444444444 6666666 66 4 88888888 000000000000000000000000000000000000000000000000000000000000 4 9999 222 0 4444444 0 66 00000000000000000000000000000000000000000000000000000000 4 1 11111 0 1 4 2 8888888 2 3 5555555555555 66 0 1 99 5 3 4444 0 444444444444 222 1 7777777777 1 1 66 77 0 333333333333333333333333333 3 6 9 1 1 0 1 2222 1 6 222222222222222222222222222222222222222222222222 33333 33333333333333 111 000 1 2 0 7777 0 1 44 2 0 4 5 1 22222 9999999 66 0 99 000000000000 11 444 88 0
lowQualScore : . . . . . . . .... ... .. .. . .. . .. ....... . . . . . . .... . . ..... . . ..... .. ....................... . . .................................................... . . . ............ ....... .. . ........ ............................................................ . .... ... . ....... . .. ........................................................ . . ..... . . . . ....... . . ............. .. . . .. . . .... . ............ ... . .......... . . .. .. . ........................... . . . . . . . .... . . ................................................ ..... .............. ... ... . . . .... . . .. . . . . . ..... ....... .. . .. ............ .. ... .. .
lowQualScore : 0 0 0 5 1 0 0 4444 444 22 99 7 66 7 99 1111111 7 7 7 7 7 7 1111 3 3 66666 8 8 44444 44 44444444444444444444444 7 1 4444444444444444444444444444444444444444444444444444 1 4 0 000000000000 2222222 00 2 11111111 111111111111111111111111111111111111111111111111111111111111 4 4444 999 9 4444444 1 11 77777777777777777777777777777777777777777777777777777777 4 0 11111 8 9 4 2 1111111 9 7 3333333333333 11 5 6 22 2 5 2222 1 222222222222 111 6 0000000000 4 0 99 99 7 888888888888888888888888888 3 7 3 0 0 7 9 1111 4 6 555555555555555555555555555555555555555555555555 77777 55555555555555 333 000 7 0 1 5555 2 9 88 0 2 5 0 4 55555 5555555 00 7 99 666666666666 00 000 88 0
consensus : NNNNTTTTNTNTTGGTGGGTTGCGTNAGCAACTCACCAGTGTTGACATGCGAGA-T-TT-GA-AGCTCCGTCAAAAGN-TGT-AT-ATA-CCTCATAA--CTCAGTGTACCAACACACCAAAA-A--T--AGTGC-AAA-GA-A-ATTCCAAA-AAG----TACATAATGTTAAATATATAAAGACAAAC-AA-CAACTTANTTTAGGTANCC--G-AATAAATTA-T-----ATTCA--T---GT--TTGCTTCAAATGTGT--------------------AAANAGCAT--CTGTTGAATGTAA-TAACATCTGT-TGAATGTA--TAT-------GAAATTACTACGCCATTGAAACC-------TT-NGATCG--------TGT------A-------C---------T----------G-CCT---------A----------T-GAATGAA----AGACACGACGCTGT-------AGCGTG--T---------AT-----------AG------TGTA---T--T-----G----T----CTATAA-ATNGAACAGTA-----GCAGACGATAAAAT-ACTGTTTAC-TA-TACCTTTTAATCTATC--AC--A-T---CATGTATAAGTAATAGTGT--TAGTGAAGGATCCTTTCCCATTATTTTATTAGTTAATTTAAA--AAGGATATATTAATG----TATATAGTCTATAAA------------GGGCTATGCTACAGCTAA-C-ACAAAACTTACT-G-------TGTTACATAGTGCAATNA--CGC--AAACACGCT---T-T---TTTACGCCCTG-CT-TGTG-TATTTCTGATACTACAAATTTATA-CTGTACGATCCNGCCAGAATGTGTNTTGGTCCCGTTATCGCCTGATAGCCATTAAT----TAGATATTGTTTC--AA---T--------TT-----G-AACGA-----------------TACCAAATAATTTGCGGCATT----TG----A---AATGCAAGCT---CTGCTTTTATGATGGATTTACCAAATTATATATTATCAATTGTTGT----AAAAAGAGGATCAAAAACTTACTATTGAAA-CTCT-----TTTTAAT---C---ATTA-NAATTGCGAGTTCAAAGTA-----------ACTTAAT--GTG---TA-TATGTCTC-TGGATAAACCAAGT
Reference ( family-2886 ) : NNNNTTTTNTNTTGGTGGGTTGCGTNAGCAACTCACCAGTGTTGACATGCGAGA-T-TT-GA-AGCTCCGTCAAAAGN-TGT-AT-ATA-CCTCATAA--CTCAGTGTACCAACACACCAAAA-A--T--AGTGC-AAA-GA-A-ATTCCAAA-AAG----TACATAATGTTAAATATATAAAGACAAAC-AA-CAACTTANTTTAGGTANCC--G-AATAAATTA-T-----ATTCA--T---GT--TTGCTTCAAATGTGT--------------------AAANAGCAT--CTGTTGAATGTAA-TAACATCTGT-TGAATGTA--TAT-------GAAATTACTACGCCATTGAAACC-------TT-NGATCG--------TGT------A-------C---------T----------G-CCT---------A----------T-GAATGAA----AGACACGACGCTGT-------AGCGTG--T---------AT-----------AG------TGTA---T--T-----G----T----CTATAA-ATNGAACAGTA-----GCAGACGATAAAAT-ACTGTTTAC-TA-TACCTTTTAATCTATC--AC--A-T---CATGTATAAGTAATAGTGT--TAGTGAAGGATCCTTTCCCATTATTTTATTAGTTAATTTAAA--AAGGATATATTAATG----TATATAGTCTATAAA------------GGGCTATGCTACAGCTAA-C-ACAAAACTTACT-G-------TGTTACATAGTGCAATNA--CGC--AAACACGCT---T-T---TTTACGCCCTG-CT-TGTG-TATTTCTGATACTACAAATTTATA-CTGTACGATCCNGCCAGAATGTGTNTTGGTCCCGTTATCGCCTGATAGCCATTAAT----TAGATATTGTTTC--AA---T--------TT-----G-AACGA-----------------TACCAAATAATTTGCGGCATT----TG----A---AATGCAAGCT---CTGCTTTTATGATGGATTTACCAAATTATATATTATCAATTGTTGT----AAAAAGAGGATCAAAAACTTACTATTGAAA-CTCT-----TTTTAAT---C---ATTA-NAATTGCGAGTTCAAAGTA-----------ACTTAAT--GTG---TA-TATGTCTC-TGGATAAACCAAGT
gi|1 : TTTTTTATTGGTGGGTTGCGTTA----CTCAACAGTGTTGACATGCGAGA-T-TT-TG-AGCATAG--ATAAAT-TGTCATAATT-CCTCATAA--CAAAGTGTACCAACACACCAAAA-A--TGAAGTGCAAAA-AA-A-AATCCAAA-AAG----TACACAATGCTCTATACATAAATACAAAT--A-CAACCTATTGTAGATAACC--G-AATATATTATT-----AGTCA-------T--TTG--TCAAATGTTT--------------------GAAAAGCA-------TGAATGTAA--AACAT-TGTATAAAAATT--TG--------GAAATTACTACGCTATT-AAACC-------TG-TGGTCG--------TGG------G-------CTCTGGGATTT----------G-TC---------------------T-GAGTAAATATTATCCATTACAATGTGTCGGAAAGCGCGAAT---------GT-----------AT------TTTA---T--G-----G----T----CTATAC-ATCGAATAGCAAATATGCAGGC-ATGAA---ACT-TTTG--TA-TACCTTTTAATCTAT---------T---CATGTATAAGTAATATTGT--TAGTGTAGGATTATCTCCTA----TTTACTCATTAGTTTAAATGAAAAGTTCATTA-------TATATAGTCTATGA
gi|1 : aatatg-------TGGTATATACTGCAATAA--CAC--AAACACGCT---TAT---TTT----------T-TGTGATATTTCTGATACTAC---TTTACA-CT-TGTTATCCGGCCAGAATATGTATTTGTCCCGTTGATGTATGATAATCATTAATATGATAATTATTATTTgcgtcagaatgcaataagcatacatgaacaacaagtaaccatatcatttaatcaaacaatataaatggtatatactgcaataacacaaacacgcttattttttgtgatatttctgatactactttacacttgttatccggccagaatatgtatttgtcccgttgatgtatgataatcattaatatgataattattatttttcccataatgacgggaaagtttcagtttgacttatcacattaaagaaatagttcgatacattgtaagtatattagagcattgcaatgtgtgtctaaaataaatttcatgaaatgtttcatttcaaattagttgcaattgttgtgaaaagggaatgatactcctttttaaatcattttacttggagttatgaattacgaaatcattgatttcatgtgtattatgtctctaggtaaacc
gi|1 : aatatgttttttattggtgggttgcgttactcaacagtgttgacatgcgagattttgagcatagataaattgtcataattcctcataacaaagtgtaccaacacaccaaaaatgaagtgcaaaaaaaaatccaaaaagtacacaatgctctatacataaatacaaatacaacctattgtagataaccgaatatattattagtcatttgtcaaatgtttgaaaagcatgaatgtaaaacattgtataaaaatttggaaattactacgctattaaacctgtggtcgtgggctctgggatttgtctgagtaaatattatccattacaatgtgtcggaaagcgcgaatgtattttatggtctatacatcgaatagcaaatatgcaggcatgaaacttttgtataccttttaatctattcatgtataagtaatattgttagtgtaggattatctcctatttactcattagtttaaatgaaaagttcattatatatagtctatgagcgtcagaatgcaataagcatacatgaacaacaagtaaccatatcatttaatcaaacaatataaaATTT--CAAATTA---GTTG-CAATTGTTGT----GAAAAGGGAAT--GATACTC-CTTTTTAAA--TCA-----TTTTACT---TGGAGTTATGAATTACGAAATC--ATTG-----------ATTTCAT--GTG---TATTATGTCTC-TAGGTAAACCttcccataatgacgggaaagtttcagtttgacttatcacattaaagaaatagttcgatacattgtaagtatattagagcattgcaatgtgtgtctaaaataaatttcatgaaatgtttcatttcaaattagttgcaattgttgtgaaaagggaatgatactcctttttaaatcattttacttggagttatgaattacgaaatcattgatttcatgtgtattatgtctctaggtaaacc
gi|10 : aatatgttttttattggtgggttgcgttactcaacagtgttgacatgcgagattttgagcatagataaattgtcataattcctcataacaaagtgtaccaacacaccaaaaatgaagtgcaaaaaaaaatccaaaaagtacacaatgctctatacataaatacaaatacaacctattgtagataaccgaatatattattagtcatttgtcaaatgtttgaaaagcatgaatgtaaaacattgtataaaaatttggaaattactacgctattaaacctgtggtcgtgggctctgggatttgtctgagtaaatattatccattacaatgtgtcggaaagcgcgaatgtattttatggtctatacatcgaatagcaaatatgcaggcatgaaacttttgtataccttttaatctattcatgtataagtaatattgttagtgtaggattatctcctatttactcattagtttaaatgaaaagttcattatatatagtctatgagcgtcagaatgcaataagcatacatgaacaacaagtaaccatatcatttaatcaaacaatataaatggtatatactgcaataacacaaacacgcttattttttgtgatatttctgatactactttacacttgttatccggccagaatatgtatttgtcccgttgatgtatgataatcattaatatgataattattatttttcccataatgacgggaaagtttcagtttgacttatcacattaaagaaatagttcgatacattgtaagtatattagagcattgcaatgtgtgtctaaaataaatttcatgaaatgtttcAGA------------GGGCTGTGCTACAGCTAA-CCATAAAACTTGCT-G-------TGTTACATAGTGCAACAG--CGC--AAA----------------TTACGCCCTG-CTGTGTG-TATTTCTGATATTACAAATTTATA-CTGTACG-TTAAGCGAGAATGTGTATTGGCCCTGATATCGCCTGATATCCA----------AGGT--------------------------------------------------------ACCAAATAAT-----GCATG----CA----A---AA--CAAACT---CTGCTTGTATGATGTATTTACCAAACTATATATTAGCAATTATGGT----AAACTGAAGATCAAAAACTTACTATTGGAA-CTCT-----TTTCAAT---C---ATTA-AAATTACGAGTTCA---TA-----------TCTTAAG--GTG---TA-T
gi|11 : GTG-TATTTCTGATACTACAAATATATA-CTATACGATCCAGCCAGAATGTGTATTGGTTCTGTTATCGCCTGATAGCCATTAAT----TAGACATTGCTTC--AAATGT--------TTCATTGG-AACG------------------TACCAAATAATTTGCGGCATT----TG----AATGAACACATGCT---CTGCTTTTATGATTGATTTACCAAA--ATATATTATCAATTGTTGT----AAGAAGAGGAT-AAAAA----------AAA-CTGT-----TTTTAAT---C---ATTA-AAATTAAGAGTTTAAAGTAATTAAACATTGACTTAAT--GTG---TA-TATGTCTCGTGGATAAGCCAAG
gi|12 : TTTAT----TCAATATT-TTT----A---T--------TT-----GTAACG------------------TACCTAATATTTGGCGGCATT----TGCAACA---AATGCAAG------TACTCT-ATGATGGATTTACCAAATGATCTATTATAAAATGGTGTTAAAAAAAAGATGGTAAAAAAAATACTATGAAAA-CTGT-----CTTCCAT---C---ATTA-TAGTTGGGAGTTCAAAGTA-----------
gi|13 : aaagtcatatattttatatttttgatgagttgcgtaagcataaaactgacagtttatgtctgtatgacatttcatgaaatatctttattttaaattcaaacgatactt----------T-GAATGAA----AAAC-TGACGCTGT-------GGTGTA--TCGGAAAGCGAG-----------AG------TATAACAT--T-----G----TAGGCCTGTAA-ATATAACAGTA-----GTAGACGAGAACATGACATTTTAT-TG--AC---TTAAACTAT
gi|14 : gaatggctctggatttaatTAA-C-ACAAA--TAACTAG-------TGT-GCA----GCAGTTATCCGTTTAAAAACG-------T---TTTACACTATGACT-TGTAATATTTCTGATACTACAAATGTATAACT--ACGATCCTACCAGGATGTGTTTTGGTCTCATAATCGGCTGATAGCCAatacagtttatcgtcatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnttaagaggaaacagataaattataatatata
gi|15 : atcaagcatATAAATAAAGATAAA--GA-CAGCTTTTCTTAGGTAACT--A-AATGCATTG-TTAGACATT----T---GA--TCGTATTGAATGTGT--------------------GAAAAGCAT--ATGTTG-CTTTAA-TA-----TAT-TGCA----------------GAAATTACTACGCCAGTGAAatt
gi|16 : aaaataaacactTTTATTTTGGTGGGTTGCGTGAGCAACTTACCAGTGTTTTCATGCAAGATT-TT-GA-GGGTCGGTAAAAA
gi|18 : ---CATGTATAAGTAATAGTGT--T-GTG
gi|2 : tcaataTTTTTTGTTGGTGGATTGCGTTAGCAACTCACCAGAGCTGACATGTGAAA-T-CT-GA-AGCTCCGTCAAAAAACTGT-AT-CTA-CCTCATTA--CTCAGTGTATCAACACACCAAAA-A--T--AGTGC-AAG-TT-A-ATTCCAAA-AAG----TACATACTGTTCAATATATAATGACAAAC-AAACAAATTAATTTAGGTACCC--A-AGTAAATTACT-----ATTTA--T---GTATTTGGTTCAATTGTGT--------------------AAATAGCAT--CTGTTGAATGTAAATAATATCTGC-TAAATGTA--TAT-------GAAATTACTACGCCAATGAAATC-------TT-AGGTTG--------TGT------A-------C--------------------G-CCT---------A----------T-GAATGAG----AGACACAACGCTGT-------AGCGTG--T---------AT-----------AG------TGT----T--T-----G----T----CTATAA-ATTAAACAGTA-----GCAGACAATAAAAT-ACTGTTTAC-TAGTATCCTTTAAACCATCCAGCCAA-T---CATGTATAAGTAATAGAGT--TAGTGAAGGAGCCTTTTCCATTATTTTGTTAGTTAATTTATA--AAGGATATATTAATG----AATATAGTCTATAAA------------GGGCTATGCTAT-GTT----------ACTTACG-G-------TGTTACATAATGCAATAA--CGC--AAACACGTT---T-TCCATTTACACCCTG-CTATGTG-TATTTCTGATACTATAAATTTATA-CTGAACGATCCTGCCGTGATGTGCTTTTGTCCTGTTATCGCCTGATAGTCATTTAT----AAGATATTGTTTT--AAC--T--------TT-----G-AACAA-----------------TACCAAATAAT-----ACA------TG----A---AATACAACCT---CTGCTGCTATGGTGGATTTACCAAATTATATTTCATCAATTGTTGT----AAAAAGAGGAT-AAAAATTTACTATTCAAA-CTCT-----TTTTAATCGAC---ATTA-AAATTGCGAGTTC---GTA-----------ACTTAAT--CTG---TA-TATGTTTC-TGGATAAACAAAGTcgtgtaccgtgttgaaaccatttt
gi|3 : tactCACCAGAGTTGACATGTGAAA-T-TT-AA-AGCTGCGTCAAAAG--TGG-AT-ATA-CCTCATCA--ATCAATGTACCAACATACCAAAA-ACAT--AGTGC-AAA-GA-A-TTTCCAAA-AAG----TACATACTATTAAATATATAAAGACAAAT-AAACAACTTA----------------AAT---TCA-T-----ATTTA--TTTTGT--TTGTTTCAAATGTGTAAATAGCATCTGTTGAATGTAAATAACAT--CTGCTGAATGTAAATAACATCTGT-TGAATGTA--TAT-------GAAATTACTACGCCATTGAAATC-------TT-AGAATG--------TGT------A-------C--------------------A-TTT---------A----------T-GAATGAA----AAACACGACGCTGT-------AGCGTC--A---------AT-----------AG------TG-G---T--G-----G----T----CAATAA-ACTGGACAGTA-----GCAGACGACAAAAT-ACTGTTAACTTC-TATTTTTTAATTTAGC--CA--A-T---CATATATAAGTAAAAGTGTGCTA------GATCCTTTCCCATTATGTTATTAGTTAATTTAAA--CA-GATATATTAATG----TATATAGCCTAGA---------------GACTATACTACAGCTAA-CAATAAAACTTATT-G-------TGTTACATGGTGCAATAA--CGC--TAACAC----------------------------GTG-TATTTCTGATACTACATATTTATA-CTGTACGATCCAGCCAAAATGTGTTTTGGTTCTGTTATCGCCTTATAGCCATTAAT----TAGATATTGTTTCA-AA---T--------TT-----A-AACGATACTTTTCATTGGAAGGTACCAAATAATTTGCGGCTTTTGCATG----A---AATGAAAGCTCTGCTGCTTTTATGATGAATTTACCAAATTATATATTATCAATTGTTGT----AAAAAAAGGATCAAAAAC-TA-------------T-----TTTCAAT---C---ATTA-AAATTGg
gi|4 : cTGTGAAA-TGTT-GA-AGCTCCGTCAAAAG--TGT-AA-ATA-CATCGTAA--CTCAGTGTACCAACACACCAAAA-ACAT--AGTGC-AAA-GA-A-A--CTAAATAAA----TACATAACGTTAAATATATAAAGACAAATTAA-CAGTTTGATTTAGGTATC---G-AATAAATTAAT-----ATTC---T----T--TTGCTTTAATTGCTT--------------------CAAATGCGT---------A---AA-TAACATCTGT-TGAATGTA--TAT-------AAAATTATTACGCCATTGAAACC-------TT-AGATTGGATACATTTATG-----A-------C---------T----------GGCCC---------AAGCATGTGGTT-GAATGAA----ATACATGGCATTTT-------AACGTG--T---------AG-----------AG------GGTA---G--T-----G----T----TTATTA-ACTGAACAGTA-----GCAAACGATAAAAC-ATTGTTTAC-CAGTATCTTTTAATCTAT---AC--AGT---TATGCATTAATAATAGTGT--TAAAGAAGGATCCTTTCCCATTATTTTACTAGTTAATTTAAA--AATTATATAATTATG----CATATAGCATTTAAA------------GAGCTATGCTACAGCTAATC-ACAAAACTTACT-G-------TGTTACATAGTACAATTA--TGC--AAACACGCT---T-T---T
gi|4 : ATTAAA----T-GATACTTTTTCCAAA---TATTTGGCATT-----G-GAGCA-----------------TACCAAATAATTTTCTGCATT----TGCAA-A---AATA-AAGCT---CTGTATTTATGATGGATTTACCAAATTATATATTATCAATT-TTGT----AAAAAAAAGATCAAAACCTTACTATTGAAACCTTT-----TTTTAAT---C---ATTT-CAATTGCGAGTTCAAAGTA-----------Acgcaaattaaatgatactttttccaaatatttggcattggagcataccaaataattttctgcatttgcaaaaataaagctctgtatttatgatggatttaccaaattatatattatcaattttgtaaaaaaaagatcaaaaccttactattgaaacctttttttaatcatttcaattgcgagttcaaagtaataaaacattga
gi|5 : tgtgaaatgttgaagctccgtcaaaagtgtaaatacatcgtaactcagtgtaccaacacaccaaaaacatagtgcaaagaaactaaataaatacataacgttaaatatataaagacaaattaacagtttgatttaggtatcgaataaattaatattcttttgctttaattgcttcaaatgcgtaaataacatctgttgaatgtatataaaattattacgccattgaaaccttagattggatacatttatgactggcccaagcatgtggttgaatgaaatacatggcattttaacgtgtagagggtagtgtttattaactgaacagtagcaaacgataaaacattgtttaccagtatcttttaatctatacagttatgcattaataatagtgttaaagaaggatcctttcccattattttactagttaatttaaaaattatataattatgcatatagcatttaaagagctatgctacagctaatcacaaaacttactgtgttacatagtacaattatgcaaacacgcttttcgcaaTTTGTTTTCATAGATTGCATAAGCAACTCACCCGTTTTGACTTTCGATG-TGCT-AA-AGC-ACGGCAAAATG-TGC-AT-ATA-CCTCACAACCCTCCGTGTACTAACACATCAAAATA--C--CGTGC-AAAGGA-A-ATT--GAA-AGGAATATATATACTGTTAAATATATAAGGACAAAC--A-CAAC-TAATTTGAGTAACCCTG-AAC--ATT---------------T---AT--TTGCTTCAAATGTAT--------------------AA-----AT--GTGTTTAATGTTA-TA-----TTT-CG------------------GAAATTATCACGCCGTCGAAACA-------TG-TAACCG--------TGT------ATATAAGGT---------T----------G-GCTTG-------AATTTAAT---T-AAATGAA----AGAC-------------------------T---------AC-----------AG------TGTA---T-------------------CAGAAGGCGGGACAATA-----GCCGTCGATCAAAT-ACT-TTT------TACCTTGTA------------------------ATAGGTGATAGTGT--TAGTGCTGGATTCTTTCCCATTGTTTAATAAG--GAT---AT--AAGGATATATTAATG----TACATAGTATATAAGTCAGAATTCAATGGGCTATACTACAACTAACC-ACGATACTAACT-GAATCTTATATTATATACCGCAATTA--Ctaaaacattga
gi|6 : atcGCTTTAAG-ATGT--------------------AAATAGCAT--CTTTTGAATGTAa
gi|6 : taataaatataagagaatacaacccaaactctatcattcactactggctaccctctcatataagttagcatatatgaaaactcacagatctgtggtaATGTAAATAGCATCTTT-TGAATGTA--TAT-------GAAATTACTACGCAATTGAAACT-------TT-GGATTG--------TGT------A-------T---------TTTTATGATTGG-CCCTGGAATGTGA----------TTGAATGAA----AGACCCGACGCTGT-------AGCGTG--T---------AT-----------AG------TGTA---G--G-----G----T----CTATAA-ATTGAACAGTA-----GCAGACGATAAAAT-ACTGTTTAC-TAGTACATTTTAATATAT---AC--A-TGTACGTGTATAAGTAATAAGGT--AAGAGAAGGATCCTTTCCCATTATTTTATTAGTTTCTTTAAA--AAGGATATATTATTGTAAATATATAGTCTATAAA------------GGGCTATGCTACAACTAACC-ACAACACTTAC----------TGTTAAATAGTGCAGTTA--TGC--AAACACGCTTTCT-T---CTTACGCCCTG-TT-tatgaaattactacgcaattgaaactttggattgtgtatttttatgattggccctggaatgtgattgaatgaaagacccgacgctgtagcgtgtatagtgtagggtctataaattgaacagtagcagacgataaaatactgtttactagtacattttaatatatacatgtacgtgtataagtaataaggtaagagaaggatcctttcccattattttattagtttctttaaaaaggatatattattgtaaatatatagtctataaagggctatgctacaactaaccacaacacttactgttaaatagtgcagttatgcaaacacgctttcttcttacgccctgttg
gi|7 : taataaatataagagaatacaacccaaactctatcattcactactggctaccctctcatataagttagcatatatgaaaactcacagatctgtggtagctttaagACTCATCAGTGTTAATATGTGGAA-T-TTCGA-ACCTC-GCTAAAAGG--GT-AG-ATA-CCTTATAA--CTCAGTGCACCAACGCATCAAAA-A--TGTAGTGC-AAG-GACA-ATTCCAAA-AAG----TACATAATGTTCAATATATAAAGACAAAC--A-TAGCTTGTTTTGTGTACCC--G-AATAAATTA-CA----AGTCA--T---TTGATTGGTTCAAGTCTGTG-------------------AAAAAGCATGACTATTG---------------TGT-TGAATGTATTTATATTTTCGGAAATTACTACGCCATTGAAACCAATGTGGTTATGAT-G--------GGTTCTCAAA-------T---------T----------T-TCT--------------------T-GAATGAA----AGACA-----CTAT-------AGCGTA--TCGA------AA-----------AGCGGGACTGTA---T--TTCAGAG----T----CTTAAA-ATAGAAGAAAA-----GCAGACGAT---AT-ATT-TTTGT-TA--ACCTTGTAATC---C--AC--A-----CATGTTAAAGTAATGGTGT--TAGTAAATGATCGTTTCCCATTg
gi|8 : CCAGTATTAAAATGTGAGA-T-TT-TTTAGCGC-GTTAAA-GT-TGT-AA-AAAACCTCATAA--CTCAGTGTACCAACTCACAAAAAGA--C--AGTTC-AAA-GA-ACATTCCAGA-AAC----TACAAAAAGTTAAATATAAAAGGCCAAAC--A-TAACTTA-TTGAGGTATCT--GAAATAAATAT-T-----AGTCATCT---GG--TTACTTCAAATGTGT----------------------------------TTAAATGTA-------------TAAATATAT-TTT-------GAAATCACTACGCTATTGAAACA-------TG-TGACCA--------TGT------A-------T---------T------------CAT--------------------T-GAATGAA----TGA-ATTGCACTGT-------G--GTG--T---------ATCCTAAAGCGGGAG------TGTA---TGCT-----GTTGAT----CTATAA-ATAGAACAGTA-----GCAGACGAGAAA--------------------TTGTAATCAAT---A---------CATGTATAAGTAATAGTGT--T
gi|9 : ----A---AATGCAAGCT---GTGCTTTATTGATGGATTTACCAAAGTATATAATATCAATTGGTGTAG--AGAAAGATGATCCAAAACTTGCTATTGAAA-CTCTTATCCTTTTAAT---C---ATTA-TATTTGGGATTTTAAAGTA-------------TAAATCAGTGACTTA--GTATCTT-TGGATAAACCAAGTgt
blockSeqs : A T G G G T G CGA TCG TA AC . T A CC ACAT . G C C T T AATA C C CAAA T A CCTG GC GTTAGACATTTGA T AAATAGCATCTGTTGAATGTAAATAACATCTGCTGAATGTAAATAACATC . T TTTATATTTTCG AATGTGG AT T GATACATT ATTTTTATGATTGGCCCTGGAATGTGA T . ACA . . ATCCTAAAGCGGGAGTGTATGCTGTTGAT G A . A G T ACTAGT C T CCAGCCAAT GC A . G A TAAA TCAGAATTCAAT CA A TGAATCTTA G A TC TT GTTTTCCATTTACACCCTGCTA A A G A A A . A G CAAATTTAAACGATACTTTTCATTGGAAGG TTGCG TGCAACA CAC CTG T C TAAA C CT A G C C TATCC CGAC A AA ATTAAACATTGA CA ACT T G
blockSeqs : T G T G A . G TTT TCC TC G . T . . ACAT . . . . T . . C A TAAA A C TGA AA ACTATTTATGTAT G AAATAGCATCTGTTGAATGTAAATAATATC . T TTTT . A T . ATATAAGGTTGGCTTGAATTTAAT . . ACG . . CGGAAAGCGAGAGTATAACATTGTAGGC . T . A . G ACTTCT T C ACATGTA . A . T A . . TC A TAG A T . . GCTTTCTTCTTACGCCCTGTT . . A A A T . A G CCAAATATTTGGCATTGGAGCA TGGCG TGCATGA TGC . T T AG A AA A A . G . C A AA T . . T .
blockSeqs : G T A G A . . GA TGC TC G . A . . ATGT . . . . T . . A A TTAA A T TA AA ATATTTATTTTGT T GAAAAGCATATGTTGCTTTAATA . T TAT . A T . GACTGGCCCAAGCATGTGGT . . ATG . . CGAAAAGCGGGACTGTATTTCAGAGT . T . A . G ACCAGT C T CCAAT . C . G A . . CC A GG G A . . GTTTTACACTATGACT . . G T T T . C G CAAATGTTTCATTGGAACG TTGCG TGAATG TAC . T T . C TT A C . G . C T AA A . . T .
blockSeqs : A . . GA TCC TC T . T . . TAC . . . . T . . C A GA A A CA AA ACAAGTCATTTGA C CAAATGCGTAAATAACATC . T TAT . A C . TCTCAAATTTTCT . . CCG . . AGAGGGTAGTGT . T . A . G ACTAGT C T ACAGT . A . G A . . CC T TG G A . . TTACGCCCTGCTG . . G T T A . A T TAACTTTGAACAA TTTCT TGCAAA TGA . T T . C CT A G . C . C A AA A . . .
blockSeqs : T . . AA AC GC . . G . . GAC . . . . T . . A C CA T C CG AA TTAGTCATCTGG C AAATGTGTTTAATGTTATA . T TAT . T T . ACGCCTA . . ATT . . ATAGTGTAGGGT . G . A . G ATTG A T CACA . A . . T . . C C TG C T . . . . . . A T A . A . ATTTGTAACG . TGA TGC . A T . C CT A G . T . C A A .
blockSeqs : A . . GA TC CT . . A . . AT . . . . . . . A A CA . T G . AATATTCTT C GAAAAAGCATGACTATTG . T TAT . G C . ACATTTA . . TG . . ATAGTGTTTGT . T . A . . GTTA C A A . . . . . G T . . . . . . TA . . G . . C G . . C . C C .
blockSeqs : G . . AA GC TT CA . . . . TAT G TTAAATGTA . . . . T . . ATTCAT . . A . . ATAGTGGTGGT . A . A . . T . . . . . T . . . . . . . . . . C T
blockSeqs : C . . . . . . . . ACAGTGTAT . A . . . . . . . .
blockSeqCons : TC N* ACNANTCATTTGN********** TAT********* **** ******* ** ***** ACTAT** ACAGT******** ** GCTTTTTACGCCCTGCT********** **** CAAATNTTTCATTGGAACG***************************** TTGCG TGCAAA******** TGC C****** A* AA T*
originalCons : NNNNTTTTNTNTTGGTGGGTTGCGTNAGCAACTCACCAGTGTTGACATGCGAGA-T-TT-GA-AGCTCCGTCAAAAGN-TGT-AT-ATA-CCTCATAA--CTCAGTGTACCAACACACCAAAA-A--T--AGTGC-AAA-GA-A-ATTCCAAA-AAG----TACATAATGTTAAATATATAAAGACAAAC-AA-CAACTTANTTTAGGTANCC--G-AATAAATTA-T-----ATTCA--T---GT--TTGCTTCAAATGTGT--------------------AAANAGCAT--CTGTTGAATGTAA-TAACATCTGT-TGAATGTA--TAT-------GAAATTACTACGCCATTGAAACC-------TT-NGATCG--------TGT------A-------C---------T----------G-CCT---------A----------T-GAATGAA----AGACACGACGCTGT-------AGCGTG--T---------AT-----------AG------TGTA---T--T-----G----T----CTATAA-ATNGAACAGTA-----GCAGACGATAAAAT-ACTGTTTAC-TA-TACCTTTTAATCTATC--AC--A-T---CATGTATAAGTAATAGTGT--TAGTGAAGGATCCTTTCCCATTATTTTATTAGTTAATTTAAA--AAGGATATATTAATG----TATATAGTCTATAAA------------GGGCTATGCTACAGCTAA-C-ACAAAACTTACT-G-------TGTTACATAGTGCAATNA--CGC--AAACACGCT---T-T---TTTACGCCCTG-CT-TGTG-TATTTCTGATACTACAAATTTATA-CTGTACGATCCNGCCAGAATGTGTNTTGGTCCCGTTATCGCCTGATAGCCATTAAT----TAGATATTGTTTC--AA---T--------TT-----G-AACGA-----------------TACCAAATAATTTGCGGCATT----TG----A---AATGCAAGCT---CTGCTTTTATGATGGATTTACCAAATTATATATTATCAATTGTTGT----AAAAAGAGGATCAAAAACTTACTATTGAAA-CTCT-----TTTTAAT---C---ATTA-NAATTGCGAGTTCAAAGTA-----------ACTTAAT--GTG---TA-TATGTCTC-TGGATAAACCAAGT
finalCons : NNNNTTTTNTNTTGGTGGGTTGCGTNAGCAACTCACCAGTGTTGACATGCGAGA-T-TT-GA-AGCTCCGTCAAAAGN-TGT-AN-ATA-CCTCATAA--CTCAGTGTACCAACACACCAAAA-A--T--AGTGC-AAA-GA-A-ATTCCAAA-AAG----TACATAATGTTAAATATATAAAGACAAAC-AA-CAACTTANTTTAGGTANCC--G-AATAAATTACNANTCATTTGN----------TTGCTTCAAATGTGT--------------------AAANAGCAT--CTGTTGAATGTAA-TAACATCTGT-TGAATGTATAT---------GAAATTACTACGCCATTGAAACC-------TT-NGATCG--------TGT------A-------C---------T----------G-CCT---------A----------T-GAATGAA----AGACACGACGCTGT-------AGCGTG--T---------AT-----------AG------TGTA---T--T-----G----T----CTATAA-ATNGAACAGTA-----GCAGACGATAAAAT-ACTGTTTACTAT--ACCTTTTAATCTATACAGT--------CATGTATAAGTAATAGTGT--TAGTGAAGGATCCTTTCCCATTATTTTATTAGTTAATTTAAA--AAGGATATATTAATG----TATATAGTCTATAAA------------GGGCTATGCTACAGCTAA-C-ACAAAACTTACT-G-------TGTTACATAGTGCAATNA--CGC--AAACACGCTTTTTACGCCCTGCT----------TGTG-TATTTCTGATACTACAAATTTATA-CTGTACGATCCNGCCAGAATGTGTNTTGGTCCCGTTATCGCCTGATAGCCATTAAT----TAGATATTGTTTCAAATNTTTCATTGGAACG-----------------------------TACCAAATAATTTGCGGCATTTGCAAA--------AATGCAAGCT---CTGCTTTTATGATGGATTTACCAAATTATATATTATCAATTGTTGT----AAAAAGAGGATCAAAAACTTACTATTGAAA-CTCT-----TTTTAATC------ATTAA-AATTGCGAGTTCAAAGTA-----------ACTTAAT--GTG---TAT-ATGTCTC-TGGATAAACCAAGT
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|17 ): ACGGTAGATTGTGCATATATAACACAACGCTCGCTATCACGCGTGCTAAATCAAAATACCGT
Alignments
lowQualScore : 111111111111111111111111111111111111111111111111111111111111
lowQualScore : 1 111 2222 111 2222222 1111 22222 11111 11111 6666666666666666666666666666666666666666666666666666 222222222222 1111111 11111111 444444444444444444444444444444444444444444444444444444444444 111 1111111 55555555555555555555555555555555555555555555555555555555 11111 1 2222222 33333333333 1111 333333333333 1 1111111111 44444444444444444444444444 1 111111 1111 666666666666666666666666 222222222 11111 222222222 1111 222222222222222 1 11111 333333333333 11 111 1
lowQualScore : 1 1 1 2 1 5 0 6666 000 0000 1 555 77 9999999 5 5 7777 5 2222 1 1 55555 9 4 2 00000 4 66 2 4 5 11111 1 3333333333333333333333333333333333333333333333333333 0 4 2 444444444444 6666666 66 4 88888888 000000000000000000000000000000000000000000000000000000000000 4 9999 222 0 4444444 0 66 00000000000000000000000000000000000000000000000000000000 4 1 11111 0 1 4 2 8888888 2 66 0 22222222222 66 3 1 99 5 3 4444 0 444444444444 7 555 1 7777777777 1 1 66 77 0 55555555555555555555555555 3 6 9 1 1 3 2 99 666666 5 2222 5 5 555555555555555555555555 4 5 222222222 44444 5 444444444 0000 1 888 0 5 2 5 5 111111111111111 0 1 44 2 0 4 5 1 22222 9999999 77 0 99 000000000000 11 444 88 0
lowQualScore : . . . . . . . .... ... .... . ... .. ....... . . .... . .... . . ..... . . . ..... . .. . . . ..... . .................................................... . . . ............ ....... .. . ........ ............................................................ . .... ... . ....... . .. ........................................................ . . ..... . . . . ....... . .. . ........... .. . . .. . . .... . ............ . ... . .......... . . .. .. . .......................... . . . . . . . .. ...... . .... . . ........................ . . ......... ..... . ......... .... . ... . . . . . ............... . . .. . . . . . ..... ....... .. . .. ............ .. ... .. .
lowQualScore : 0 0 0 5 1 0 0 4444 444 5555 0 777 99 1111111 7 7 9999 7 1111 3 3 66666 7 4 6 66666 6 22 6 4 3 11111 9 3333333333333333333333333333333333333333333333333333 1 4 0 000000000000 2222222 00 2 11111111 111111111111111111111111111111111111111111111111111111111111 4 4444 999 9 4444444 1 11 77777777777777777777777777777777777777777777777777777777 4 0 11111 8 9 4 2 1111111 9 11 1 66666666666 11 6 6 22 2 5 2222 1 222222222222 1 999 6 0000000000 4 0 99 99 7 44444444444444444444444444 3 7 3 0 0 7 2 22 888888 2 1111 7 7 111111111111111111111111 3 7 999999999 11111 0 222222222 6666 4 888 4 0 0 0 0 444444444444444 2 9 88 0 2 5 0 4 55555 5555555 44 7 99 666666666666 00 000 88 0
consensus : NNNNTTTTNTNTTGGTGGGTTGCGTNAGCAACTCACCAGTGTTGACATGCGAGA-T-TT-GA-AGCTCCGTCAAAAGN-TGTANATA---CCTCATAA--CTCAGTGTACCAACACACCAAAA-A--T--AGTGCAAA-GA-A-AT-TCCAAA-AAG----TACATAATGTTAAATATATAAAGACAAAC-AA-CAACTTANTTTAG-GTANCC--G-AATAAATTACTAGTCATTT-GNTT-----GCTTCAAATGTGT--------------------AAA-AGCAT--CTGTTGAATGTAA-TAACATCTGT-TGAATGTA--TAT-------GAAATTACTACGCCATTGAAACC-------TT-NGATCG--------TGT------A-------C---------T----------G-CCT---------A----------T-GAATGAA----AGACACGACGCTGT-------AGCGTG--T---------AT-----------AG------TGTA---T--T-----G----T----CTATAA-ATNGAACAGTA-----GCAGACGATAAAAT-ACTGTTTACT-A-TACCTTTTAA--TCTATACA-G----T-CATGTATAAGTAATAGTGT--TAGTGAAGGATCCTTTCCCATTATTTTATTAGTTAATTTAAA--AAGGATATATTAATG----TATATAGTCTATAAA------------GGGCTATGCTACAGCTAA-C-A-CAAAACTTACT-G-------TGTTACATAGTGCAATNA--CGC--AAACACGCTT----T----TTACGCCCTG-CT-TGTG-TATTTCTGATACTACAAATTTATA-CTGTACGATCCNGCCAGAATGTGTNTTGGTCCCGTTATCGCCTGATA--GCCATTAAT----TAGATATTGTTT----C-A-A-AT-----------NTTT--CA--TTGGAAC-GTACC---------AAATAATTTGCGGCATTTGCA-A-------AAA----TGCAAGCT---CTGCTTTTATGATGGATTT-ACCAAATTATATATTATC-AATT-GTTGT----AA---------AAAGAGGATCAAAAACTTACTATTGAAA-CTCT-----TTTTAAT---C---ATTA-NAATTGCGAGTTCAAAGTA-----------ACTTAAT--GTG---TA-TATGTCTC-TGGATAAACCAAGT
Reference ( family-2886 ) : NNNNTTTTNTNTTGGTGGGTTGCGTNAGCAACTCACCAGTGTTGACATGCGAGA-T-TT-GA-AGCTCCGTCAAAAGN-TGTANATA---CCTCATAA--CTCAGTGTACCAACACACCAAAA-A--T--AGTGCAAA-GA-A-AT-TCCAAA-AAG----TACATAATGTTAAATATATAAAGACAAAC-AA-CAACTTANTTTAG-GTANCC--G-AATAAATTACNANTCATTT-GNTT-----GCTTCAAATGTGT--------------------AAANAGCAT--CTGTTGAATGTAA-TAACATCTGT-TGAATGTA--TAT-------GAAATTACTACGCCATTGAAACC-------TT-NGATCG--------TGT------A-------C---------T----------G-CCT---------A----------T-GAATGAA----AGACACGACGCTGT-------AGCGTG--T---------AT-----------AG------TGTA---T--T-----G----T----CTATAA-ATNGAACAGTA-----GCAGACGATAAAAT-ACTGTTTACT-A-TACCTTTTAA--TCTATACA-G----T-CATGTATAAGTAATAGTGT--TAGTGAAGGATCCTTTCCCATTATTTTATTAGTTAATTTAAA--AAGGATATATTAATG----TATATAGTCTATAAA------------GGGCTATGCTACAGCTAA-C-A-CAAAACTTACT-G-------TGTTACATAGTGCAATNA--CGC--AAACACGCTT----T----TTACGCCCTG-CT-TGTG-TATTTCTGATACTACAAATTTATA-CTGTACGATCCNGCCAGAATGTGTNTTGGTCCCGTTATCGCCTGATA--GCCATTAAT----TAGATATTGTTT----C-A-A-AT-----------NTTT--CA--TTGGAAC-GTACC---------AAATAATTTGCGGCATTTGCA-A-------AAA----TGCAAGCT---CTGCTTTTATGATGGATTT-ACCAAATTATATATTATC-AATT-GTTGT----AA---------AAAGAGGATCAAAAACTTACTATTGAAA-CTCT-----TTTTAAT---C---ATTA-AAATTGCGAGTTCAAAGTA-----------ACTTAAT--GTG---TA-TATGTCTC-TGGATAAACCAAGT
gi|1 : TTTTTTATTGGTGGGTTGCGTTA----CTCAACAGTGTTGACATGCGAGA-T-TT-TG-AGCATAGATAAA--T-TGT-CATAATTCCTCATAA--CAAAGTGTACCAACACACCAAAA-A--TGAAGTGCAAA-AA-A-AAATCCAAA-AAG----TACACAATGCTCTATACATAAATACAAAT--A-CAACCTATTGTAG-ATAACC--G-AATATATTATTAGTCATTT-G-----------TCAAATGTTT--------------------GAAAAGCA-------TGAATGTAA--AACAT-TGTATAAAAATT--TG--------GAAATTACTACGCTATT-AAACC-------TG-TGGTCG--------TGG------G-------CTCTGGGATTT----------G-TC---------------------T-GAGTAAATATTATCCATTACAATGTGTCGGAAAGCGCGAAT---------GT-----------AT------TTTA---T--G-----G----T----CTATAC-ATCGAATAGCAAATATGCAGGC-ATGAA---ACT-TTTG-T-A-TACCTTTTAA--TCTAT---------T-CATGTATAAGTAATATTGT--TAGTGTAGGATTATCTCCTA----TTTACTCATTAGTTTAAATGAAAAGTTCATTA-------TATATAGTCTATGA
gi|1 : aatatg-------TGGTATATACTGCAATAA--CAC--AAACACGCTTA---T----TT---------TT-TGTGATATTTCTGATACTAC---TTTACA-CT-TGTTATCCGGCCAGAATATGTATTTGTCCCGTTGATGTATGATA--ATCATTAATATGATAATTATTATTTTTCCC-ATA-ATGACGGGAAA--GTTT--CAGTTTG--AC-TTATCACATTAAAGAAATAGTTCGATACA-TTGTA-AGTATATTAGAGCATTGCAA--T---GTGTGTCTAAAATAAATTTCATGAAATGTTTCATT-TCAAATTAGTTGC----AATTGTTGTGAAAAGGGAAT--GATACTC-CTTTTTAAA--TCA-----TTTTACT---TGGAGTTATGAATTACGAAATC--ATTG-----------ATTTCAT--GTG---TATTATGTCTC-TAGGTAAACCgcgtcagaatgcaataagcatacatgaacaacaagtaaccatatcatttaatcaaacaatataaatggtatatactgcaataacacaaacacgcttattttttgtgatatttctgatactactttacacttgttatccggccagaatatgtatttgtcccgttgatgtatgataatcattaatatgataattattatttttcccataatgacgggaaagtttcagtttgacttatcacattaaagaaatagttcgatacattgtaagtatattagagcattgcaatgtgtgtctaaaataaatttcatgaaatgtttcatttcaaattagttgcaattgttgtgaaaagggaatgatactcctttttaaatcattttacttggagttatgaattacgaaatcattgatttcatgtgtattatgtctctaggtaaacc
gi|10 : aatatgttttttattggtgggttgcgttactcaacagtgttgacatgcgagattttgagcatagataaattgtcataattcctcataacaaagtgtaccaacacaccaaaaatgaagtgcaaaaaaaaatccaaaaagtacacaatgctctatacataaatacaaatacaacctattgtagataaccgaatatattattagtcatttgtcaaatgtttgaaaagcatgaatgtaaaacattgtataaaaatttggaaattactacgctattaaacctgtggtcgtgggctctgggatttgtctgagtaaatattatccattacaatgtgtcggaaagcgcgaatgtattttatggtctatacatcgaatagcaaatatgcaggcatgaaacttttgtataccttttaatctattcatgtataagtaatattgttagtgtaggattatctcctatttactcattagtttaaatgaaaagttcattatatatagtctatgagcgtcagaatgcaataagcatacatgaacaacaagtaaccatatcatttaatcaaacaatataaaAGA------------GGGCTGTGCTACAGCTAA-CCA-TAAAACTTGCT-G-------TGTTACATAGTGCAACAG--CGC--AAA----------------TTACGCCCTG-CTGTGTG-TATTTCTGATATTACAAATTTATA-CTGTACG-TTAAGCGAGAATGTGTATTGGC----------CCTGATATCGCC----------T-GATATC--------C-A-A-G------------------------------GTACC---------AAATAAT-----GCAT--GCA-A-------AA-------CAAACT---CTGCTTGTATGATGTATTT-ACCAAACTATATATTAGC-AATT-ATGGT----AA---------ACTGAAGATCAAAAACTTACTATTGGAA-CTCT-----TTTCAAT---C---ATTA-AAATTACGAGTTCA---TA-----------TCTTAAG--GTG---TA-T
gi|11 : GTG-TATTTCTGATACTACAAATATATA-CTATACGATCCAGCCAGAATGTGTATTGGTTCTGTTATCGCCTGATA--GCCATTAAT----TAGACATTGCTT----C-A-A-AT-----------GTTT--CA--TTGGAAC-GTACC---------AAATAATTTGCGGCATTTGAA-T-------GAA----CACATGCT---CTGCTTTTATGATTGATTT-ACCAAA--ATATATTATC-AATT-GTTGT----AA---------GAAGAGGAT-AAAAA----------AAA-CTGT-----TTTTAAT---C---ATTA-AAATTAAGAGTTTAAAGTAATTAAACATTGACTTAAT--GTG---TA-TATGTCTCGTGGATAAGCCAAG
gi|12 : TT----C-A-ATAT-----------TTTT--AT--TTGTAAC-GTACC---------TAATATTTGGCGGCATTTGCA-AC------AAA----TGCAAG------TACTCT-ATGATGGATTT-ACCAAATGATCTATTATA-AAAT-GGTGTTAAAAA---------AAAGATGGTAAAAAAAATACTATGAAAA-CTGT-----CTTCCAT---C---ATTA-TAGTTGGGAGTTCAAAGTA-----------
gi|13 : aaagtcatatattttatatttttgatgagttgcgtaagcataaaactgacagtttatgtctgtatgacatttcatgaaatatctttattttaaattcaaacgatacttttta----------T-GAATGAA----AAAC-TGACGCTGT-------GGTGTA--TCGGAAAGCGAG-----------AG------TATAACAT--T-----G----TAGGCCTGTAA-ATATAACAGTA-----GTAGACGAGAACATGACATTTTATT-G--AC---TTAAACTATATACA-G----T-
gi|14 : gaatggctctggatttaatTAA-C-A-CAAA--TAACTAG-------TGT-GCA----GCAGTTATCCGTTTAAAAACG--T----T----TTACACTATGACT-TGTAATATTTCTGATACTACAAATGTATAACT--ACGATCCTACCAGGATGTGTTTTGGTCTCATAATCGGCTGATA--GCCAttatcgtcatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnttaagaggaaacagataaattataatatata
gi|15 : atcaagcatATAAATAAAGATAAA--GA-CAGCTTTTCTTAG-GTAACT--A-AATGCATTGTTAGACATTT-GATC-----GTATTGAATGTGT--------------------GAAAAGCAT--ATGTTG-CTTTAA-TA-----TAT-TGCA----------------GAAATTACTACGCCAGTGAAatt
gi|16 : aaaataaacactTTTATTTTGGTGGGTTGCGTGAGCAACTTACCAGTGTTTTCATGCAAGATT-TT-GA-GGGTCGGTAAAAA
gi|18 : -CATGTATAAGTAATAGTGT--T-GTG
gi|2 : tcaataTTTTTTGTTGGTGGATTGCGTTAGCAACTCACCAGAGCTGACATGTGAAA-T-CT-GA-AGCTCCGTCAAAAAACTGTATCTA---CCTCATTA--CTCAGTGTATCAACACACCAAAA-A--T--AGTGCAAG-TT-A-AT-TCCAAA-AAG----TACATACTGTTCAATATATAATGACAAAC-AAACAAATTAATTTAG-GTACCC--A-AGTAAATTACTATTTATGT-ATTT-----GGTTCAATTGTGT--------------------AAATAGCAT--CTGTTGAATGTAAATAATATCTGC-TAAATGTA--TAT-------GAAATTACTACGCCAATGAAATC-------TT-AGGTTG--------TGT------A-------C--------------------G-CCT---------A----------T-GAATGAG----AGACACAACGCTGT-------AGCGTG--T---------AT-----------AG------TGT----T--T-----G----T----CTATAA-ATTAAACAGTA-----GCAGACAATAAAAT-ACTGTTTACT-AGTATCCTTTAA--ACCATCCA-GCCAAT-CATGTATAAGTAATAGAGT--TAGTGAAGGAGCCTTTTCCATTATTTTGTTAGTTAATTTATA--AAGGATATATTAATG----AATATAGTCTATAAA------------GGGCTATGCTAT-GTT-----------ACTTACG-G-------TGTTACATAATGCAATAA--CGC--AAACACGTTTTCCAT----TTACACCCTG-CTATGTG-TATTTCTGATACTATAAATTTATA-CTGAACGATCCTGCCGTGATGTGCTTTTGTCCTGTTATCGCCTGATA--GTCATTTAT----AAGATATTGTTT----T-A-A--------------CTTT---------GAACAATACC---------AAATAAT-----ACAT------G-------AAA----TACAACCT---CTGCTGCTATGGTGGATTT-ACCAAATTATATTTCATC-AATT-GTTGT----AA---------AAAGAGGAT-AAAAATTTACTATTCAAA-CTCT-----TTTTAATCGAC---ATTA-AAATTGCGAGTTC---GTA-----------ACTTAAT--CTG---TA-TATGTTTC-TGGATAAACAAAGTcgtgtaccgtgttgaaaccatttt
gi|3 : tactCACCAGAGTTGACATGTGAAA-T-TT-AA-AGCTGCGTCAAAAG--TGGATATA---CCTCATCA--ATCAATGTACCAACATACCAAAA-ACAT--AGTGCAAA-GA-A-TT-TCCAAA-AAG----TACATACTATTAAATATATAAAGACAAAT-AAACAACTTA---------------------AATTCATATTTATTTTGTTT-----GTTTCAAATGTGTAAATAGCATCTGTTGAATGTAAATAACAT--CTGCTGAATGTAAATAACATCTGT-TGAATGTA--TAT-------GAAATTACTACGCCATTGAAATC-------TT-AGAATG--------TGT------A-------C--------------------A-TTT---------A----------T-GAATGAA----AAACACGACGCTGT-------AGCGTC--A---------AT-----------AG------TG-G---T--G-----G----T----CAATAA-ACTGGACAGTA-----GCAGACGACAAAAT-ACTGTTAACTTC-TATTTTTTAA--TTTAGCCA-A----T-CATATATAAGTAAAAGTGTGCTAG------ATCCTTTCCCATTATGTTATTAGTTAATTTAAA--CAG-ATATATTAATG----TATATAGCCTAGA---------------GACTATACTACAGCTAA-C-AATAAAACTTATT-G-------TGTTACATGGTGCAATAA--CGC--TAACACG----------------------------TG-TATTTCTGATACTACATATTTATA-CTGTACGATCCAGCCAAAATGTGTTTTGGTTCTGTTATCGCCTTATA--GCCATTAAT----TAGATATTGTTT----C-A-A-ATTTAAACGATACTTTT--CA--TTGGAAG-GTACC---------AAATAATTTGCGGCTTTTGCATG-------AAA----TGAAAGCTCTGCTGCTTTTATGATGAATTT-ACCAAATTATATATTATC-AATT-GTTGT----AA---------AAAAAGGATCAAAAAC-TA-------------T-----TTTCAAT---C---ATTA-AAATTGg
gi|4 : cTGTGAAA-TGTT-GA-AGCTCCGTCAAAAG--TGTAAATA---CATCGTAA--CTCAGTGTACCAACACACCAAAA-ACAT--AGTGCAAA-GA-A-A---CTAAATAAA----TACATAACGTTAAATATATAAAGACAAATTAA-CAGTTTGATTTAG-GTATC---G-AATAAATTAATATTCTTTT-GCTTTAATTGCTTCAAATGCGT--------------------AAA----------------------TAACATCTGT-TGAATGTA--TAT-------AAAATTATTACGCCATTGAAACC-------TT-AGATTGGATACATTTATG-----A-------C---------T----------GGCCC---------AAGCATGTGGTT-GAATGAA----ATACATGGCATTTT-------AACGTG--T---------AG-----------AG------GGTA---G--T-----G----T----TTATTA-ACTGAACAGTA-----GCAAACGATAAAAC-ATTGTTTACC-AGTATCTTTTAA--TCTATACA-G----T-TATGCATTAATAATAGTGT--TAAAGAAGGATCCTTTCCCATTATTTTACTAGTTAATTTAAA--AATTATATAATTATG----CATATAGCATTTAAA------------GAGCTATGCTACAGCTAATC-A-CAAAACTTACT-G-------TGTTACATAGTACAATTA--TGC--AAACACGCTT----T----T
gi|4 : ATTAAA----T-GATACTTTTT----CCA-A-AT-----------ATTTGGCA--TTGGAGC-ATACC---------AAATAATTTTCTGCATTTGCA-A-------AAA----TA-AAGCT---CTGTATTTATGATGGATTT-ACCAAATTATATATTATC-AATT--TTGT----AA---------AAAAAAGATCAAAACCTTACTATTGAAACCTTT-----TTTTAAT---C---ATTT-CAATTGCGAGTTCAAAGTA-----------Acgcaaattaaatgatactttttccaaatatttggcattggagcataccaaataattttctgcatttgcaaaaataaagctctgtatttatgatggatttaccaaattatatattatcaattttgtaaaaaaaagatcaaaaccttactattgaaacctttttttaatcatttcaattgcgagttcaaagtaataaaacattga
gi|5 : tgtgaaatgttgaagctccgtcaaaagtgtaaatacatcgtaactcagtgtaccaacacaccaaaaacatagtgcaaagaaactaaataaatacataacgttaaatatataaagacaaattaacagtttgatttaggtatcgaataaattaatattcttttgctttaattgcttcaaatgcgtaaataacatctgttgaatgtatataaaattattacgccattgaaaccttagattggatacatttatgactggcccaagcatgtggttgaatgaaatacatggcattttaacgtgtagagggtagtgtttattaactgaacagtagcaaacgataaaacattgtttaccagtatcttttaatctatacagttatgcattaataatagtgttaaagaaggatcctttcccattattttactagttaatttaaaaattatataattatgcatatagcatttaaagagctatgctacagctaatcacaaaacttactgtgttacatagtacaattatgcaaacacgcttttcgcaaTTTGTTTTCATAGATTGCATAAGCAACTCACCCGTTTTGACTTTCGATG-TGCT-AA-AGC-ACGGCAAAATG-TGCATATA---CCTCACAACCCTCCGTGTACTAACACATCAAAATA--C--CGTGCAAAGGA-A-AT-T--GAA-AGGAATATATATACTGTTAAATATATAAGGACAAAC--A-CAAC-TAATTTGA-GTAACCCTG-AA------------CATTT-ATTT-----GCTTCAAATGTAT--------------------AA-----AT--GTGTTTAATGTTA-TA-----TTT-CG------------------GAAATTATCACGCCGTCGAAACA-------TG-TAACCG--------TGT------ATATAAGGT---------T----------G-GCTTG-------AATTTAAT---T-AAATGAA----AGAC-------------------------T---------AC-----------AG------TGTA---T-------------------CAGAAGGCGGGACAATA-----GCCGTCGATCAAAT-ACT-TTT------TACCTTGTA------------------------ATAGGTGATAGTGT--TAGTGCTGGATTCTTTCCCATTGTTTAATAAG--GAT---AT--AAGGATATATTAATG----TACATAGTATATAAGTCAGAATTCAATGGGCTATACTACAACTAACC-A-CGATACTAACT-GAATCTTATATTATATACCGCAATTA--Ctaaaacattga
gi|6 : atcTAAGTTAGCATATAT--G-AA-AACTCACAGATC-TGT-GGTA-----GCTTTAAG-ATGT--------------------AAATAGCAT--CTTTTGAATGTAa
gi|6 : taataaatataagagaatacaacccaaactctatcattcactactggctaccctctcataATGTAAATAGCATCTTT-TGAATGTA--TAT-------GAAATTACTACGCAATTGAAACT-------TT-GGATTG--------TGT------A-------T---------TTTTATGATTGG-CCCTGGAATGTGA----------TTGAATGAA----AGACCCGACGCTGT-------AGCGTG--T---------AT-----------AG------TGTA---G--G-----G----T----CTATAA-ATTGAACAGTA-----GCAGACGATAAAAT-ACTGTTTACT-AGTACATTTTAA--TATATACATG----TACGTGTATAAGTAATAAGGT--AAGAGAAGGATCCTTTCCCATTATTTTATTAGTTTCTTTAAA--AAGGATATATTATTGTAAATATATAGTCTATAAA------------GGGCTATGCTACAACTAACC-A-CAACACTTAC----------TGTTAAATAGTGCAGTTA--TGC--AAACACGCTT----TCTTCTTACGCCCTG-TT-tatgaaattactacgcaattgaaactttggattgtgtatttttatgattggccctggaatgtgattgaatgaaagacccgacgctgtagcgtgtatagtgtagggtctataaattgaacagtagcagacgataaaatactgtttactagtacattttaatatatacatgtacgtgtataagtaataaggtaagagaaggatcctttcccattattttattagtttctttaaaaaggatatattattgtaaatatatagtctataaagggctatgctacaactaaccacaacacttactgttaaatagtgcagttatgcaaacacgctttcttcttacgccctgttg
gi|7 : taataaatataagagaatacaacccaaactctatcattcactactggctaccctctcatataagttagcatatatgaaaactcacagatctgtggtagctttaagACTCATCAGTGTTAATATGTGGAA-T-TTCGA-ACCTC-GCTAAAAGG--GTAGATA---CCTTATAA--CTCAGTGCACCAACGCATCAAAA-A--TGTAGTGCAAG-GACA-AT-TCCAAA-AAG----TACATAATGTTCAATATATAAAGACAAAC--A-TAGCTTGTTTTGT-GTACCC--G-AATAAATTACAAGTCATTT-GATT-----GGTTCAAGTCTGTG-------------------AAAAAGCATGACTATTG---------------TGT-TGAATGTATTTATATTTTCGGAAATTACTACGCCATTGAAACCAATGTGGTTATGAT-G--------GGTTCTCAAA-------T---------T----------T-TCT--------------------T-GAATGAA----AGACA-----CTAT-------AGCGTA--TCGA------AA-----------AGCGGGACTGTA---T--TTCAGAG----T----CTTAAA-ATAGAAGAAAA-----GCAGACGAT---AT-ATT-TTTGTT-A--ACCTTGTAA--TCCACA----------CATGTTAAAGTAATGGTGT--TAGTAAATGATCGTTTCCCATTg
gi|8 : CCAGTATTAAAATGTGAGA-T-TT-TTTAGCGC-GTTAAA-GT-TGTAAAAAA--CCTCATAA--CTCAGTGTACCAACTCACAAAAAGA--C--AGTTCAAA-GA-ACAT-TCCAGA-AAC----TACAAAAAGTTAAATATAAAAGGCCAAAC--A-TAACTTA-TTGAG-GTATCT--GAAATAAA-TATTAGTCATCT-GGTT-----ACTTCAAATGTGT----------------------------------TTAAATGTA-------------TAAATATAT-TTT-------GAAATCACTACGCTATTGAAACA-------TG-TGACCA--------TGT------A-------T---------T------------CAT--------------------T-GAATGAA----TGA-ATTGCACTGT-------G--GTG--T---------ATCCTAAAGCGGGAG------TGTA---TGCT-----GTTGAT----CTATAA-ATAGAACAGTA-----GCAGACGAGAAA--------------------TTGTAA--TCAATA----------CATGTATAAGTAATAGTGT--T
gi|9 : TGCA-A-------AAA----TGCAAGCT---GTGCTTTATTGATGGATTT-ACCAAAGTATATAATATC-AATT-GGTGTAG--AG---------AAAGATGATCCAAAACTTGCTATTGAAA-CTCTTATCCTTTTAAT---C---ATTA-TATTTGGGATTTTAAAGTA-------------TAAATCAGTGACTTA--GTATCTT-TGGATAAACCAAGTgt
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|17 ): ACGGTAGATTGTGCATATATAACACAACGCTCGCTATCACGCGTGCTAAATCAAAATACCGT