lowQualScore : 11111111111111111111111111111111
lowQualScore : 111 11111 222 1111111111111111 444444 11 222 888888888888888 99999999999999999999999999999999999999999999999999999999999999 11111 22222222222222 22222222222222222222222222222222 11
lowQualScore : 555 11111 777777 33 2 8888888 5 0 222 22 5 8 1 4 444 4444 5555555555555555 22 22 2 33 222222 6 2 33 9 888 3 7 222222222222222 55 4 66666666666666666666666666666666666666666666666666666666666666 11111 99999 11111111111111 3 3 44444444444444444444444444444444 3 44 3 3 44 6 22 33 99999999 33 9999999 33
lowQualScore : ... ..... ...... .. . ....... . . ... .. . . . . ... .... ................ .. .. . .. ...... . . .. . ... . . ............... .. . .............................................................. ..... ..... .............. . . ................................ . .. . . .. . .. .. ........ .. ....... ..
lowQualScore : 555 00000 222222 44 5 1111111 0 4 999 88 3 7 7 7 666 7777 3333333333333333 66 99 2 11 000000 1 7 00 7 555 3 5 111111111111111 00 3 22222222222222222222222222222222222222222222222222222222222222 77777 11111 44444444444444 6 2 22222222222222222222222222222222 5 66 3 3 66 0 55 77 77777777 77 3333333 99
consensus : TGAGGGTCTGT--TAG-A---TT------TTT--T-GCA-------TATGCCATATGGGCCCATTTA-NTTTTTTGC--ATATGCCATAT-AGG-CGAAA-T----ATTTTT-----------TG--GCATAT--GCCATATC--AGGTTATTGA-T--TTTTTCCCCA-TATGCTATTCGAAAATTGAATTAAAATTCTAATAC-TTTTTTTTCTATTTTGAGTCTTTTGA-TCTATTTT-GATCTATTTT-----CAA----TCTTTAAGATCCTTACACGATCTT--AGAATCACCACCGTACGCCAAAAAGT----TA-CTTTG-----------------AT-GAC----------CTT-----TAATG-----CAG--------------TTTGACCA-TTTTCCTACTCAAAATTAGAGATATACAT---A------A----------C----------TCGCAATCT--TAAACT-T-TATTTT--CTCCATATAGAAAAAAG-TATTTTTT--GCATA--------T--GCCATATGAGGTCA-------TTTA--TATTTTGCATATGCCAT
Reference ( gi|8 ) : TGAGGGTCTGT--GAG-A---TT------TTT--T-GCA-------TATGCCACATGGGCCCATTT--TTTTTTTGC--ATATGTCATAT-AGG-CGAAA-T----ATTTTT-----------TG--GCATAT--GCCATATC--AGGTTATTGA-T--TTTTTCCCCG-TATGCTATTCGAAAATTGAATTAAAATTCTAGTAC-TTTTTTTCCTATTTTGAGTCTCTTTC-TCTATTTT-GATCTACTTT-----C------TCGTTAAGATCCTTACACGATCTT--AGAATCATCACCGTACGCCAAAAAGT----TACCCTTG-----------------AT-TAC----------TTT-----TAATG-----CAG--------------TTTGACCA-TTTTCCTACTCAAAATTAGAGATATACAT----------A----------C----------TTGCAATCT--TAAACT-T-TATTTT--CTCCATGTAGAAAAAAA-TATTTTTT--GCATA--------T--GCCATATGAGGTCA-------TTTA--TATTTTGCATATGCCAT
gi|2 : TGAGGGTCTGT--TAG-T---TTGTTTTTTTT--T-GCA-------TATGTCTTATGGGCTCATTTATTTTTTTCGC--ATATGCCATAT-AGG-CGAAA-T----ATTTTT-----------TTTTGCATAT--GCCATATC--AGGTTATTGA-T--TTTTTTTTCA-TATGCTATTCGAAAATTGAATTAAAATTCTAATAC-TTTTTTT-CTATTTTGAGTCTTTTGA-TCTATTTTCGAGC-----------C------TCTTTAAGATCCTTACACGATCAT---GGATCACCAACGTATGGCAAAAAGT----TGGCTTTG-----------------AT-GAC----------CTT-----TTATG-----CAG--------------TTTGGCCA-TTTTCCTACTCAAAATTTGAGATATACATATAACTAGAGA----------C----------TCGCAATCT--TAAACT-T-TATTTT--CTCCATATAGATAAACA-TATTTATT--GCATA--------T--GTCATATGAGCTCA-------TTTA--TATTTAGCATAAGCCAT
gi|9 : gTGAGGGTCTGT--TAG-GG--TT------CTT--T-GCA-------TATGCCATATGGGCCCATTTA-CTTTTTTGC--ATATGCCATGT-AGG-CGAAG-T----ATTTTT------------G--GCACAT--GCCATATC--AGGTTATTGT-T--TTTTTTTCAA-TATGTTATTCGAAAACTGAATTAAAATTCGAATAC-TTTTTTTTCTATTTTGAGTCTTTTGA-TCTATTTT-GATCTATTTT-----CAACAC-TATTTAAGATCCTTACACGATCTT--AGAATCACCA--------------------------TG-----------------AT-GAC----------CTT-----TTATG-----CAG--------------TTTGACCA-TTTTCCAACTCAAAATTA----TATACAC----------AACTAGAGA--C----------TCGCAATCT--TAAACT-T-TATTTT--CTCCATATTGAAAAAAG-TATTTTTT--GCATA--------T--GCCATATGAGGTCA-------TTTA--TATTAAGCATATGTCATatgggagctcacaccataacagaccct
gi|12 : TGAGGGTTTGTTAGGG-A---TT------TT---T-GCA-------TATGCCATATAGACATCTTTA-TTTTTTTGCATATATGCCATATCAGG-TTATT-G----ATTTTT-----------T---CCATAT--GCTAT-TCGAAAATT-TTAA-TACTTTTTTTC-------CTATT------TTGAGT-------------C-TTTTTAT-CTATTTTGA-TCTATTTatg
gi|3 : tgTGAGGGTCTGT--TAG-AGTTTT------TTT--T-GCA-------TATGCCATATGGGCCCATTTA-TTTTTTTAC--ATATGCCATAT-AGG-CGAAA-T----ATTTTTATTTTATATATTA--TTATAT--AT-ATATT--ATTTTATTGAAT--TTTTTTC--A-TATGCTATTCGAAAATTTAATTAAAATTCTTATAC-TTTTTtcaagtataaacacttattagctttgatgatctttaatgcagtttgaccattttcctactcaaaattagggatatacatacaataagagactcacaatcttaaactttattttctccatatagaagaaagtatttttttcgcatatgccatatgaggt
gi|15 : aggTGAAGGTCTGT--TAG-G---GT------TTT--T-GCA-------TATGCCATATGGGTCCATTT--nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntaagcctctttaatgacttaaatgcagtttggcaattttcctactcaaaattagagatagagactcgaaatcttaaactttattttctccatataaaaaaagtattttttgcatatgccctatgaggcatttattttttgcatatgccg
gi|7 : gGAGGGTCTGT--TAG-G---TT------TTTATT-GCA-------TATGCCATATGGGCCCATTT--ATTTTTTGC--ATATGCCATAT-AGG-AAAAA-T----ATTTTT-----------TA--GCATAT--GCCATATC--AGGTTATTGA-T--TTTT---CCA-TATGCTATTCGAAAACTGAATTAAAATTCTAGTAC-TTTTTTTTTTATTTTGAGTC-----------TTTT-GATCTATTTT-----CAAGCG-TCTTTAAGATCCTTACACGATCTT--AGAATCAC--CCGTGTGC------G----------------------------------AC----------CTT-----TAATG-----CAG--------------TTTGATCATTTTTCCTATTCAAAATT--AGATATACATTAGAG-----A----------C----------TCACAATTT--TAAACT-T-TATTTT--CTCCATATAGAAAAAAG-TATTATTT--GCATA--------T--GCCATATGAGGTCA-------TTTA--TATTTTGCATATGCCATattttttttgcatatgctatatcaggttattaatttttccatatgctattcgaaaattgaattaaaattataatactttttttctgttttgagtcttttgatcta
gi|6 : cGAGGGTCTGT--TAG-G---TT------TTT--TAGCA-------TATGCTATATGGGCCCATTTA-TTTTTTTGC--ATATGCCATAT-AAG-CGAAA-T----ATTTTT-----------TA--GTATAT--GCCATATC--AGGTTATTGA-T--TTTTTAC--A-TATGCTATTCGAAAATTGAATTAAAATTCTAATAC-TTTTTT-CATATTTTGAGTTTTTTTTATCTATTTT-GATCT----------------------------------TGATCTT--AGAATT-TC------CG----AACAT----TACCTTTG-----------------AT-GAC----------CTT-----TAATG-----CAG--------------TTTGACCA-TTTTCTTACTCAAAACTAGAATTATACAT----------A----------CAATACGAGACTCACAACCT--AAAACT-T-TATTTTTTCTCCATATAGAAAAAGG-TATTTTTT--GCATA--------T--GCCATATGAGGTCA-------TTTA--TATTTTGCATACACCATatgggtacccccaacccctaaa
gi|4 : GAGGGTATGA--GGG-----TT------TTT--T-GCA-------TATGCCACATGAGCCCATTT--cgtgttaccgatccaagaccctt
gi|10 : GAGGGTCTGT--TAGGA---TT------ATT--T-GCA-------TATGTTATATGGCCCCCTGTA-TTTTTTTCC--ATCTACCATAT-AGG-CGAAA-T----ATTTTT-----------TG--GCATAT--GCCATATC--AGGTTATTGA-T--TTTTTC---GATATGCTATTCGAAAATTGAATTAAAATTCTAATTC-TTTTTTT--TATTTTGAGTCT-----------TTT-GATCTATTTT-------------------GATC--TAT----TTTC--AG--TTATAA----ACAC------AT----TACCTTTA-----------------AT-GAC----------TTT-----TAAGA-----CAG--------------TTTGACAA-TTGTCTTACTCAAAACTAGAGATATACAT----------A----------CAATTAGAGATTCGCAATCT--TAAACTATATATTTT--CTCTATATTGAAAAAAG-TATTTTTT--GCATAATTTTTTTT--TTTTTATGAGTTCATGAAAATTTTA--TATTTTGCATATACCATatttttttgcatatgccatatcaggttattgattttttctccatatgctattcgaaaattgaattaaaattctaatacttttttttctatttcgagtcttttcatctattttgatctattttcaagcctctttaaggtccttacacgtacttagaatcaccagcgtacgccaaaaagtgtgataaatttgtaatctattttgtgactaacgttcgccagttcctttaatgcagtttgaccattttcctattcaaacttagagatatacatacaattagagactcgcaatcttaaactttattttctccatatagaaaaaagtattttttgcatatgccatatgaggtaatttatattttgcatatgccatatggccccc
gi|17 : GAGGGTTTGT--TAG-G---GT------TTT--T-GCATATTTTTTATGCTATATGGACCTATTT--ATTat
gi|4 : -A---TT------TTT--T-GCA-------TATGCCATATGAGGTAATTT--ATATTTTGC--ATATGCCATAT--GG-C
gi|5 : gagggtatgagggttttttgcatatgccacatgagcccatttatttttttgcatatgccatatcaggttattgattttttctccatatgctattcgaaaattgaattaaaattctaatacttttttttctatttcgagtcttttcatctattttgatctattttcaagcctctttaaggtccttacacgtacttagaatcaccagcgtacgccaaaaagtgtgataaatttgtaatctattttgtgactaacgttcgccagttcctttaatgcagtttgaccattttcctattcaaacttagagatatacatacaattagagactcgcaatcttaaactttattttctccatatagaaaaaagt-A---TG------TTT--T-GCA-------TATACCATATGACGTCATTT--ATATTTTGC--ATATGCCATAT-GGG-cccc
gi|11 : tatatatgccatataggcaaaataatttggcatatgccatatcatgttattgattttttccatatactattcgaaaattgaataaaaattctaatactttttcttctattttgagtattttgatctattttgatctattttcaagcctctttaagacccttacacgatcttagagtcaccaccgtacgccaaaaagtgtgataacattgttatcaagtataaacacattacctttgatgacctttaatgcagtttgaccattttcttgctcaaacttagatatatacatacaattagagactcgcaatcttctaaacccgccatagagaaaaaaagt-A---TT------GTT--T-GCA-------TACGCCATATGAGGTCATTT--ATATTTTGC--ATATGCCACAT-GGG-tacaccccaccccctgtcagac
gi|1 : atgtcgccctgatactgttcgtactacatcgaatataacgagcgggatctctgccatatatgtcaggttattgactttttccatatgctatttgaaaattgaattaaattctaatatttttttacattttgagtcttttgatatattttgctctattttcaagcctctttaagatcttcacacgatcttagaatcaccatgatgacgttttatgtagtttgaccattttcctactcaaattagagatatacacataattagagacttgttatattaaactttattttctccatatagaaaaagt-A---TA------TTT--T-GCA-------TATGCCATATGAGGTAATTT--ATATTTTGC--ATATGTCATtaccccactaacaaaccct
gi|13 : tatgcaatataagcgaaatattttttggcatatgccatataaggttattgattttttccatatgttattcgaaaattgaattaaaattctaatacctttttttctatttttagtcttttgatctattttaatctattttcaagcctctttaagatccttacacgatcttagaatcaccaccgtacgccaataagtgtgataattttgtaatcttatttgtgactagcgttcggttcgtggtggttctgcaccgatattcagataaaagcgtggcaagtataaacacattacctttgatgacctttaatgcagcttgaccattttcctactcaaattagagatatcattcgcaatcattaactttattttctccatatagaaaaaat-A---TT------TTT--T-GCA-------TATGCCATATAAGGTCATTT--ATATTTTGC--ATATGCCATAT-GGG-gagtaacccaccccctctaacagaccct
gi|16 : tttgcatatgccatatcaggtttttgatttttttccatatgctattcgaaattgaattaaaattctaatactttttttttctattttgagtcttttgatctattttgatctattttcaagccttcttaagatccttacacgacaacctactcaaaattagagatatacatacaattagagacttgcaatcttaaactttattttctccatatagaaaaaagt------TTT--T-GCA-------TATGCCATATGAGGTCATTT--ATATTTTGC--ATATGCCATAT-GGG-tatcccccccccccccttccccataacagaccccc
gi|4 : TTTTTTGC--ATATGCCACATGAGC-CCATT-T----ATTTTT-----------TT--GCATAT--GCCATATC--AGGTTATTGA-T--TTTTTCTCCA-TATGCTATTCGAAAATTGAATTAAAATTCTAATAC-TTTTTTTTCTATTTCGAGTCTTTTCA-TCTATTTT-GATCTATTTTCAAGCC------TCTTTAAGGTCCTTACACGTACTT--AGAATCACCAGCGTACGCCAAAAAGTGTGATAAATTTGTA---------------ATCTAT----------TTTGTGACTAACGTTCGCCAGTTCCTTTAATGCAGTTTGACCA-TTTTCCTATTCAAACTTAGAGATATACATACAATTAGAGA----------C----------TCGCAATCT--TAAACT-T-TATTTT--CTCCATATAGAAAAAAG-TATTTTTT--GCATA--------T--GCCATATGAGGTAA-------TTTA--TATTTTGCATATGCCATtacctcctcaaacagaacctc
gi|11 : gagggtatgagggTTGTTTGC--ATACGCCATATGAGG-TCATT-T----ATATTT-----------TG---CATAT--GCCACATatggccccc
gi|13 : atgtcgccctgatactgttcgtactacatcgaatataacgagcgggatctctgccatatatgtcaggttattgactttttccatatgctatttgaaaattgaattaaattctaatatttttttacattttgagtcttttgatatattttgctctattttcaagcctctttaagatcttcacacgatcttagaatcaccatgatgacgttttatgtagtttgaccattttcctactcaaattagagatatacacataattagagacttgttatattaaactttattttctccatatagaaaaagtaTTTTTTGC--ATATGCCATATAAGG-TCATT-T----ATATTT-----------T---GCATAT--GCCATAT----GGGTATgggtaccccactaacaaaccct
gi|12 : tttgcatatgccatatcaggtttttgatttttttccatatgctattcgaaattgaattaaaattctaatactttttttttctattttgagtcttttgatctattttgatctattttcaagccttcttaagatccttacacgacaacctactcaaaattagagatatacatacaattagagacttgcaatcttaaactttattttctccatatagaaaaaagtaTTTTTGC--ATATGCCATAT-AGA-C---A-TCTTTATTTTT-----------TT--GCATATATGCCATATC--AGGTTATTGA-T--TTTTTCC--A-TATGCTATTCGAAAATT---TTAA--------TAC-TTTTTTTCCTATTTTGAGTCTTTTT------------ATCTATTTT-------------------GATCT-------ATTTTCAAGTATAAACACT-TA----------T----TAGCTTTG-----------------AT-GAT----------CTT-----TAATG-----CAG--------------TTTGACCA-TTTTCCTACTCAAAATTAGGGATATACATACAATAAGAGA----------C----------TCACAATCT--TAAACT-T-TATTTT--CTCCATATAGAAGAAAG-TATTTTTTTCGCATA--------T--GCCATATGAGGTcccccccccccccttccccataacagaccccc
gi|15 : tgtgagggtttgttagggaTTTTTGC--ATATGCCATAT-GGGTCCATT-T----ATTTTT-----------TTT-GCATAT--GCTATATC--AGGTTATTAA-T--TTTT---CCA-TATGCTATTCGAAAATTGAATTAAAATTATAATAC-TTTTTTT-CTGTTTTGAGTCTTTTGA-TCTA
gi|16 : gtgaaggtctgttagggTTTTGC--ATATGCCATATGAGG-TCATT-T----ATATTT-----------T---GCATAT--GCCATAT
gi|5 : --ATATGCCATAT-AGG-CAAAA-T----AATTT-------------G--GCATAT--GCCATATC--ATGTTATTGA-T--TTTTTCC--A-TATACTATTCGAAAATTGAATAAAAATTCTAATAC-TTTTTCTTCTATTTTGAGTATTTTGA-TCTATTTT-GATCTATTTTCAAGCC------TCTTTAAGACCCTTACACGATCTT--AGAGTCACCACCGTACGCCAAAAAGTGTGATAACATTGTTATCAAGTATAAACACAT-TACCTTTGATGACCTT-----TAATG-----CAG--------------TTTGACCA-TTTTCTTGCTCAAACTTAGATATATACATACAATTAGAGA----------C----------TCGCAATCTTCTAAAC---------C--CGCCATAGAGAAAAAAAGTATGTTTT--GCATA--------T--ACCATATGACGTCA-------TTTA--TATTTTGCATATGCCATgggtacctcctcaaacagaacctc
gi|1 : tatTATGCAATAT-AAG-CGAAA-T----ATTTTT-----------TG--GCATAT--GCCATATA--AGGTTATTGA-T--TTTTTCC--A-TATGTTATTCGAAAATTGAATTAAAATTCTAATAC-CTTTTTTTCTATTTTTAGTCTTTTGA-TCTATTTT-AATCTATTTTCAAGCC------TCTTTAAGATCCTTACACGATCTT--AGAATCACCACCGTACGCCAATAAGT---------GTG-----------------AT-AAT----------TTTG----TAATatgggtacaccccaccccctgtcagac
gi|11 : CATAT-AGA-AAAAG-T----ATTGTT-----------TG---CATAC--GCCATATG--AGGTCATTTA-T--ATTTT--GCA-TATGCCActtatttgtgactagcgttcggttcgtggtggttctgcaccgatattcagataaaagcgtggcaagtataaacacattacctttgatgacctttaatgcagcttgaccattttcctactcaaattagagatatcattcgcaatcattaactttattttctccatatagaaaaaatatattttgcatatgccatatgaggtaatttatattttgcatatgtcatgagtaacccaccccctctaacagaccct
gi|13 : atgtcgccctgatactgttcgtactacatcgaatataacgagcgggatctctgccatatatgtcaggttattgactttttccatatgctatttgaaaattgaattaaattctaatatttttttacattttgagtcttttgatatattttgctctattttcaagcctctttaagatcttcacacgatcttagaatcaccatgatgacgttttatgtagtttgaccattttcctactcaaattagagatatacacataattagagacttgttatattaaactttattttctcCATAT-AGA-AAAAAGT----ATTTTT-----------TG---CATAT--GCCATATA--AGGTCATTTA-T--ATTTT--GCA-TATGCCATcatgggtaccccactaacaaaccct
gi|14 : tttgcatatgccatatcaggtttttgatttttttccatatgctattcgaaattgaattaaaattctaatactttttttttctattttgagtcttttgatctattttgatctattttcaagccttcttaagatccttacacgacaacctactcaaaattagagatatacatacaattagagacttgcaatcttaaactttattttctcT-AGG-CGAAA-T----ATATTT-----------TG--GC---T------TATC--AGGTTATTGA-T--TTTTTCC--A-TATGCTATTCGAAAATTTCATTACAATTCTAATAT-TTGTTTTC-TATTTTGAGTCTTTTGA-TCTATTTT-GATATATTTT-----CAAGCC-TTTTTAAGAACCTTAAACGATCTT--TAAATCACCACCGTACGCCAAAAAAT----atgggtatcccccccccccccttccccataacagaccccc
gi|11 : TCTC-----------TG--CCATAT-----ATGTC--AGGTTATTGA-C--TTTTTCC--A-TATGCTATTTGAAAATTGAATTAAA-TTCTAATAT-TTTTTTAC--ATTTTGAGTCTTTTGA-TATATTTT-GCTCTATTTT-----CAAGCC-TCTTTAAGATCTTCACACGATCTT--AGAATCACCA--------------------------TG-----------------AT-GAC----------GTT-----TTATG-----TAG--------------TTTGACCA-TTTTCCTACTCAAA-TTAGAGATATACAC----------ATAATTAGAGAC----------TTGTTATAT--TAAACT-T-TATTTT--CTCCATATAGAAAAAG--TATTGTTT--GCATA--------C--GCCATATGAGGTCA-------TTTA--TATTTTGCATATGCCAgtgataattttgtgatg
gi|16 : atgtcgccctgatactgttcgtactacatcgaatataacgagcgggaTT-----------TT--GCATAT--GCCATATG--AGGTCATTTA-T--ATTTT--GCA-TATGCCATcatgggtaccccactaacaaaccct
gi|13 : T-----------TT--GCATAT--GCCATATC--AGGTTTTTGA-T--TTTTTTCC-A-TATGCTATTCG-AAATTGAATTAAAATTCTAATACTTTTTTTTTCTATTTTGAGTCTTTTGA-TCTATTTT-GATCTATTTT-----CAAGCCTTC-TTAAGATCCTTACACGAatgggtacctcctcaaacagaacctc
gi|1 : T----TACCTTTG-----------------AT-GAC----------CTT-----TAATG-----CAG--------------CTTGACCA-TTTTCCTACTCAAA-TTAGAGATAT-CAT--------------------------------TCGCAATCA--TTAACT-T-TATTTT--CTCCATATAGAAAAAA--TATATTTT--GCATA--------T--GCCATATGAGGTAA-------TTTA--TATTTTGCATATGTCATcaacctactcaaaattagagatatacatacaattagagacttgcaatcttaaactttattttctccatatagaaaaaagtattttttgcatatgccatataaggtcatttatattttgcatatgccatatgggtatcccccccccccccttccccataacagaccccc
gi|3 : tatgcaatataagcgaaatattttttggcatatgccatataaggttattgattttttccatatgttattcgaaaattgaattaaaattctaatacctttttttctatttttagtcttttgatctattttaatctattttcaagcctctttaagatccttacacgatcttagaatcaccaccgtacgccaataagtgtgataattttgtaatcttatttgtgactagcgttcggttcgtggtggttctgcaccgatattcagataaaagcgtggcaagtataaacacaCTTTA-----------------AT-GAC----------TTA------AATG-----CAG--------------TTTGGCAA-TTTTCCTACTCAAAATTAGAG--ATAGAG----------A----------C----------TCGAAATCT--TAAACT-T-TATTTT--CTCCATATA-AAAAAAG-TATTTTTT--GCATA--------T--GCCCTATGAGG-CA-------TTTA--TTTTTTGCATATGCCgagtaacccaccccctctaacagaccct
gi|13 : aggtgagggtctgttagagttttttttgcatatgccatatgggcccatttatttttttacatatgccatataggcgaaatatttttattttatatattattatatatatattattttattgaatttttttcatatgctattcgaaaatttaattaaaattcttatactttttnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntaagcctCCTACTCAAAATTAGAGATATACAT----------A----------CAATTAGAGACTTGCAATCT--TAAACT-T-TATTTT--CTCCATATAGAAAAAAG-TATTTTTT--GCATA--------T--GCCATATAAGGTCA-------TTTA--TATTTTGCATATGCCATg
gi|12 : tttgcatatgccatatcaggtttttgatttttttccatatgctattcgaaattgaattaaaattctaatactttttttttctattttgagtcttttgatctattttgatctattttcaagccttcttaagatccttacacgacaaTTTTTT--GCATA--------TATGCCATATCAGGTTA-------TTGA--TTTTTTCCATATGCTATatgggtatcccccccccccccttccccataacagaccccc
gi|15 : tgtgagggtttgttagggatttttgcatatgccatatagacatctttatTTTTT--GCATA--------T--GCCATATGGGTCCA-------TTTATTTTTTTTGCATATGCTATtcgaaaattttaatactttttttcctattttgagtctttttatctattttgatctattttcaagtataaacacttattagctttgatgatctttaatgcagtttgaccattttcctactcaaaattagggatatacatacaataagagactcacaatcttaaactttattttctccatatagaagaaagtatttttttcgcatatgccatatgaggt
gi|16 : gtgaaggtctgttagggTTTT--GCATA--------T--GCCATATGAGGTCA-------TTTA--TATTTTGCATATGCCATatcaggttattaatttttccatatgctattcgaaaattgaattaaaattataatactttttttctgttttgagtcttttgatcta
Alignments
lowQualScore : 11111111111111
lowQualScore : 11111 1111111 11111111111 2222 444 888888888888888888888888888888888888888888888888888888888888888 2222222222222222 1111111111 00000000000000 1111111 1111111
lowQualScore : 66666 999999 44 3 0000000 5 4 3 3 0 6666 22222222222 777 33 2 3333 66 2 333 3 1 333 44 0 666666666666666666666666666666666666666666666666666666666666666 0000000000000000 4444444444 3 2 55555555555555 0000000 44 3 3 44 3 33 99999999 0000000
lowQualScore : ..... ...... .. . ....... . . . . . .... ........... ... .. . .... .. . ... . . ... .. . ............................................................... ................ .......... . . .............. ....... .. . . .. . .. ........ .......
lowQualScore : 55555 666666 66 3 8888888 9 0 1 1 2 5555 77777777777 999 77 7 5555 11 9 222 1 6 111 22 4 888888888888888888888888888888888888888888888888888888888888888 4444444444444444 6666666666 3 2 88888888888888 0000000 22 1 1 22 1 44 11111111 0000000
consensus : TGAGGGTCTGTTAG-G---TT------TTT--T-GCA-------TATGCCATATGGGCCCATTTATTTTTTT-GCATATGCCATAT-AGG-CGAAAT----ATTTT-----------TTG--GCATAT--GCCATATCAGGTTATTG-ATTTTTTCCCCATATGCTATTCGAAAATTGAATTAAAATTCTAATAC-TTTTTTTTC-TATTTTGAGTCTTTTGA-TCTATTTT-GATCTATTTTCAAGCCTCTTTAAGATCC--TTACACGATCTTAGAATCACCACCGTACGCCAAAAAGT-----------------T----A-C-TTTG-----------------ATGAC----------------CTTT----------AATGCAGTTTGACCA-TTTTCCTACTCAAAATTAGAGATATACAT----ACAATTAGAGACT-------CGCAATCT--TAAACT-T-TA--TTTTCTCCATATAG-AAAAAAGTATTTTTT--GCATA--------TGCCATATGAGGTCA-------TTTATATTTTGCATATGCCAT
Reference ( family-2837 ) : TGAGGGTCTGTTAG-A---TT------TTT--T-GCA-------TATGCCATATGGGCCCATTTANTTTTTT-GCATATGCCATAT-AGG-CGAAAT----ATTTT-----------TTG--GCATAT--GCCATATCAGGTTATTG-ATTTTTTCCCCATATGCTATTCGAAAATTGAATTAAAATTCTAATAC-TTTTTTTTC-TATTTTGAGTCTTTTGA-TCTATTTT-GATCTATTTTCAA---TCTTTAAGATCC--TTACACGATCTTAGAATCACCACCGTACGCCAAAAAGT-----------------T----A-C-TTTG-----------------ATGAC----------------CTTT----------AATGCAGTTTGACCA-TTTTCCTACTCAAAATTAGAGATATACAT----A---------ACT-------CGCAATCT--TAAACT-T-TA--TTTTCTCCATATAG-AAAAAAGTATTTTTT--GCATA--------TGCCATATGAGGTCA-------TTTATATTTTGCATATGCCAT
gi|1 : TATGCAATAT-AAG-CGAAAT----ATTTT-----------TTG--GCATAT--GCCATATAAGGTTATTG-ATTTTTTCC--ATATGTTATTCGAAAATTGAATTAAAATTCTAATAC-CTTTTTTTC-TATTTTTAGTCTTTTGA-TCTATTTT-AATCTATTTTCAAGCCTCTTTAAGATCC--TTACACGATCTTAGAATCACCACCGTACGCCAATAAGTGTGA-------------T----A-A-TTTT-----------------GTAAT----------------CTT
gi|1 : T-----------------T----A-CCTTTG-----------------ATGAC----------------CTTT----------AATGCAGCTTGACCA-TTTTCCTACTCAAA-TTAGAGATAT-CAT----------------T-------CGCAATCA--TTAACT-T-TA--TTTTCTCCATATAG-AAAAAA-TATATTTT--GCATA--------TGCCATATGAGGTAA-------TTTATATTTTGCATATGTCATatttgtgactagcgttcggttcgtggtggttctgcaccgatattcagataaaagcgtggcaagtataaacacattacctttgatgacctttaatgcagcttgaccattttcctactcaaattagagatatcattcgcaatcattaactttattttctccatatagaaaaaatatattttgcatatgccatatgaggtaatttatattttgcatatgtcatgagtaacccaccccctctaacagaccct
gi|10 : tatgcaatataagcgaaatattttttggcatatgccatataaggttattgattttttccatatgttattcgaaaattgaattaaaattctaatacctttttttctatttttagtcttttgatctattttaatctattttcaagcctctttaagatccttacacgatcttagaatcaccaccgtacgccaataagtgtgataattttgtaatcttatttgtgactagcgttcggttcgtggtggttctgcaccgatattcagataaaagcgtggcaagtataaacacaGAGGGTCTGTTAGGA---TT------ATT--T-GCA-------TATGTTATATGGCCCCCTGTATTTTTTT-CCATCTACCATAT-AGG-CGAAAT----ATTTT-----------TTG--GCATAT--GCCATATCAGGTTATTG-ATTTTTTCG--ATATGCTATTCGAAAATTGAATTAAAATTCTAAT---TCTTTTTTT-TAT---------TTTGAGTCT--TTT-GA-------TCTA---TTTT---GATCTATTTTCA-G---TTATAAACAC----------------AT-----------------T----A-CCTTTA-----------------ATGAC----------------TTTT----------AAGACAGTTTGACAA-TTGTCTTACTCAAAACTAGAGATATACAT----ACAATTAGAGATT-------CGCAATCT--TAAACTATATA--TTTTCTCTATATTG-AAAAAAGTATTTTTT--GCATAATTTTTTTTTTTTTATGAGTTCATGAAAATTTTATATTTTGCATATACCATgagtaacccaccccctctaacagaccct
gi|11 : TCT-----------CTG--CCATAT-----ATGTCAGGTTATTG-ACTTTTTCC--ATATGCTATTTGAAAATTGAATTAAA-TTCTAATA---TTTTTTTA-CATTTTGAGTCTTTTGA-TATATTTT-GCTCTATTTTCAAGCCTCTTTAAGATCT--TCACACGATCTTAGAATCACCA--------------------------------------------TG-----------------ATGAC----------------GTTT----------TATGTAGTTTGACCA-TTTTCCTACTCAAA-TTAGAGATATACAC----ATAATTAGAGACT-------TGTTATAT--TAAACT-T-TA--TTTTCTCCATATAG-AAAAA-GTATTGTTT--GCATA--------CGCCATATGAGGTCA-------TTTATATTTTGCATATGCCAat
gi|11 : atgtcgccctgatactgttcgtactacatcgaatataacgagcgggaTATATTTT--GCATA--------TGCCACATGGGcatgggtaccccactaacaaaccct
gi|12 : atgtcgccctgatactgttcgtactacatcgaatataacgagcgggatctctgccatatatgtcaggttattgactttttccatatgctatttgaaaattgaattaaattctaatatttttttacattttgagtcttttgatatattttgctctattttcaagcctctttaagatcttcacacgatcttagaatcaccatgatgacgttttatgtagtttgaccattttcctactcaaattagagatatacacataattagagacttgttatattaaactttattttctccatatagaaaaagtattgtttgcatacgccatatgaggtcattTTTTT-GCATATGCCATAT-AGA-C---ATCTTTATTTT-----------TTT--GCATATATGCCATATCAGGTTATTG-ATTTTTTCC--ATATGCTATTCGAAAATT-----------TTAATAC-TTTTTTTCC-TATTTTGAGTCTTTT----------T--ATCTATTTT-GA---TCT-----ATTT--TCA---------AGTATAAACACT-TA----------T-----------------T----AGC-TTTG-----------------ATGAT----------------CTTT----------AATGCAGTTTGACCA-TTTTCCTACTCAAAATTAGGGATATACAT----ACAATAAGAGACT-------CACAATCT--TAAACT-T-TA--TTTTCTCCATATAG-AAGAAAGTATTTTTTTCGCATA--------TGCCATATGAGGTtaccccactaacaaaccct
gi|13 : tgtgagggtttgttaggga-----------TTT--GCATAT--GCCATATCAGGTTTTTG-ATTTTTTTCC-ATATGCTATTCG-AAATTGAATTAAAATTCTAATACTTTTTTTTTC-TATTTTGAGTCTTTTGA-TCTATTTT-GATCTATTTTCAAGCCTTCTTAAGATCC--TTACACGA
gi|13 : CCTACTCAAAATTAGAGATATACAT----ACAATTAGAGACT-------TGCAATCT--TAAACT-T-TA--TTTTCTCCATATAG-AAAAAAGTATTTTTT--GCATA--------TGCCATATAAGGTCA-------TTTATATTTTGCATATGCCATcaacctactcaaaattagagatatacatacaattagagacttgcaatcttaaactttattttctccatatagaaaaaagtattttttgcatatgccatataaggtcatttatattttgcatatgccatatgggtatcccccccccccccttccccataacagaccccc
gi|14 : tttgcatatgccatatcaggtttttgatttttttccatatgctattcgaaattgaattaaaattctaatactttttttttctattttgagtcttttgatctattttgatctattttcaagccttcttaagatccttacacgacaaT-AGG-CGAAAT----ATATT-----------TTG--GC---T------TATCAGGTTATTG-ATTTTTTCC--ATATGCTATTCGAAAATTTCATTACAATTCTAATA--TTTGTTTTC-TATTTTGAGTCTTTTGA-TCTATTTT-GATATATTTTCAAGCCTTTTTAAGAACC--TTAAACGATCTTTAAATCACCACCGTACGCCAAAAAAT-----------------atgggtatcccccccccccccttccccataacagaccccc
gi|15 : TGAAGGTCTGTTAG-G---GT------TTT--T-GCA-------TATGCCATATGGGTCCATTTAgtgataattttgtgatg
gi|15 : gTTTTT-GCATATGCCATAT-GGGTCCATTT----ATTTT-----------TTTT-GCATAT--GCTATATCAGGTTATTA-ATTTTT---CCATATGCTATTCGAAAATTGAATTAAAATTATAATAC--TTTTTTTC-TGTTTTGAGTCTTTTGA-TCTAttttttttgcatatgctatatcaggttattaatttttccatatgctattcgaaaattgaattaaaattataatactttttttctgttttgagtcttttgatcta
gi|16 : gtgaaggtctgttagggTTTT--GCATA--------TGCCATATGAGGTCA-------TTTATATTTTGCATATGCCAT
gi|16 : -A---TA------TTT--T-GCA-------TATGCCATATGGGatgggtacctcctcaaacagaacctc
gi|17 : ttttgcatatgccatatgaggtcatttGAGGGTTTGTTAG-G---GT------TTT--T-GCATATTTTTTATGCTATATGGACCTATTTATTtacctcctcaaacagaacctc
gi|2 : TGAGGGTCTGTTAG-T---TTGTTTTTTTT--T-GCA-------TATGTCTTATGGGCTCATTTATTTTTTTCGCATATGCCATAT-AGG-CGAAAT----ATTTT-----------TTTTTGCATAT--GCCATATCAGGTTATTG-ATTTTTTTTTCATATGCTATTCGAAAATTGAATTAAAATTCTAATAC--TTTTTTTC-TATTTTGAGTCTTTTGA-TCTATTTTCGAGCC-----------TCTTTAAGATCC--TTACACGATCAT-GGATCACCAACGTATGGCAAAAAGT-----------------TG---G-C-TTTG-----------------ATGAC----------------CTTT----------TATGCAGTTTGGCCA-TTTTCCTACTCAAAATTTGAGATATACAT----ATAACTAGAGACT-------CGCAATCT--TAAACT-T-TA--TTTTCTCCATATAG-ATAAACATATTTATT--GCATA--------TGTCATATGAGCTCA-------TTTATATTTAGCATAAGCCAT
gi|3 : gTGAGGGTCTGTTAG-AGTTTT------TTT--T-GCA-------TATGCCATATGGGCCCATTTATTTTTTT-ACATATGCCATAT-AGG-CGAAAT----ATTTTTATTTTATATATTA--TTATAT--A-TATATTATTTTATTGAATTTTTT--TCATATGCTATTCGAAAATTTAATTAAAATTCTTATAC-TTTTTatgggagctcacaccataacagaccct
gi|3 : agg-C-TTTA-----------------ATGAC-----------------TTA----------AATGCAGTTTGGCAA-TTTTCCTACTCAAAATTAGAGATAGA-------G---------ACT-------CGAAATCT--TAAACT-T-TA--TTTTCTCCATATA--AAAAAAGTATTTTTT--GCATA--------TGCCCTATGAGG-CA-------TTTATTTTTTGCATATGCCnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntaagcctctttaatgacttaaatgcagtttggcaattttcctactcaaaattagagatagagactcgaaatcttaaactttattttctccatataaaaaaagtattttttgcatatgccctatgaggcatttattttttgcatatgccg
gi|4 : aggtgagggtctgttagagttttttttgcatatgccatatgggcccatttatttttttacatatgccatataggcgaaatatttttattttatatattattatatatatattattttattgaatttttttcatatgctattcgaaaatttaattaaaattcttatactttttnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntaagcctGAGGGTATG--AG-GG--TT------TTT--T-GCA-------TATGCCACATGAGCCCATTTAg
gi|4 : TTTTTT-GCATATGCCACATGAGC-CCATTT----ATTTT-----------TTT--GCATAT--GCCATATCAGGTTATTG-ATTTTTTCTCCATATGCTATTCGAAAATTGAATTAAAATTCTAATAC-TTTTTTTTC-TATTTCGAGTCTTTTCA-TCTATTTT-GATCTATTTTCAAGCCTCTTTAAGGTCC--TTACACGTACTTAGAATCACCAGCGTACGCCAAAAAGTGTGATAAATTTGTAATCT----A-T-TTTG------------------TGACTAACGTTCGCCAGTTCCTTT----------AATGCAGTTTGACCA-TTTTCCTATTCAAACTTAGAGATATACAT----ACAATTAGAGACT-------CGCAATCT--TAAACT-T-TA--TTTTCTCCATATAG-AAAAAAGTATTTTTT--GCATA--------TGCCATATGAGGTAA-------TTTATATTTTGCATATGCCATtttttttgcatatgccatatcaggttattgattttttctccatatgctattcgaaaattgaattaaaattctaatacttttttttctatttcgagtcttttcatctattttgatctattttcaagcctctttaaggtccttacacgtacttagaatcaccagcgtacgccaaaaagtgtgataaatttgtaatctattttgtgactaacgttcgccagttcctttaatgcagtttgaccattttcctattcaaacttagagatatacatacaattagagactcgcaatcttaaactttattttctccatatagaaaaaagtattttttgcatatgccatatgaggtaatttatattttgcatatgccatatggccccc
gi|4 : gagggtatgaggg-A---TA------TTT--T-GCA-------TATGCCATATGGCCCCatggccccc
gi|5 : gagggtatgagggttttttgcatatgccacatgagcccatttatttttttgcatatgccatatcaggttattgattttttctccatatgctattcgaaaattgaattaaaattctaatacttttttttctatttcgagtcttttcatctattttgatctattttcaagcctctttaaggtccttacacgtacttagaatcaccagcgtacgccaaaaagtgtgataaatttgtaatctattttgtgactaacgttcgccagttcctttaatgcagtttgaccattttcctattcaaacttagagatatacatacaattagagactcgcaatcttaaactttattttctccatatagaaaaaagtattttttgcatatgccatatgaggtaatttATATGCCATAT-AGG-CAAAAT----AATTT-------------G--GCATAT--GCCATATCATGTTATTG-ATTTTTTCC--ATATACTATTCGAAAATTGAATAAAAATTCTAATAC-TTTTTCTTC-TATTTTGAGTATTTTGA-TCTATTTT-GATCTATTTTCAAGCCTCTTTAAGACCC--TTACACGATCTTAGAGTCACCACCGTACGCCAAAAAGTG----------------TGATAA-C-ATTGTTATCAAGTATAAACACATTAC----------------CTTTGATGACCTTTAATGCAGTTTGACCA-TTTTCTTGCTCAAACTTAGATATATACAT----ACAATTAGAGACT-------CGCAATCTTCTAAAC-----------CCGCCATAGAGAAAAAAAGTATGTTTT--GCATA--------TACCATATGACGTCA-------TTTATATTTTGCATATGCCATc
gi|6 : tatGAGGGTCTGTTAG-G---TT------TTT--TAGCA-------TATGCTATATGGGCCCATTTATTTTTTT-GCATATGCCATAT-AAG-CGAAAT----ATTTT-----------TTA--GTATAT--GCCATATCAGGTTATTG-ATTTTTT--ACATATGCTATTCGAAAATTGAATTAAAATTCTAATAC---TTTTTTCATATTTTGAGTTTTTT-------TT----ATCTATTTT-------------GATCT--T-----GATCTTAGAATT-------T---CCGAACA-T-----------------T----ACC-TTTG-----------------ATGAC----------------CTTT----------AATGCAGTTTGACCA-TTTTCTTACTCAAAACTAGAATTATACAT----ACAATACGAGACT-------CACAACCT--AAAACT-T-TATTTTTTCTCCATATAG-AAAAAGGTATTTTTT--GCATA--------TGCCATATGAGGTCA-------TTTATATTTTGCATACACCATatgggtacaccccaccccctgtcagac
gi|7 : GAGGGTCTGTTAG-G---TT------TTTATT-GCA-------TATGCCATATGGGCCCATTTA-TTTTTT-GCATATGCCATAT-AGG-AAAAAT----ATTTT-----------TTA--GCATAT--GCCATATCAGGTTATTG-ATTTTT---CCATATGCTATTCGAAAACTGAATTAAAATTCTAGTAC-TTTTTTTTT-TATTTTGAGTC-----------TTTT-GATCTATTTTCAAGCGTCTTTAAGATCC--TTACACGATCTTAGAATCAC--CCGTGTGC---------------------------------------------------------GAC----------------CTTT----------AATGCAGTTTGATCATTTTTCCTATTCAAAATT--AGATATACATTAGAG---------ACT-------CACAATTT--TAAACT-T-TA--TTTTCTCCATATAG-AAAAAAGTATTATTT--GCATA--------TGCCATATGAGGTCA-------TTTATATTTTGCATATGCCATcgtgttaccgatccaagaccctt
gi|7 : cTATATTTT--GCATA--------TGCCATATGGGatgggtacccccaacccctaaa
gi|8 : cgagggtctgttaggtttttattgcatatgccatatgggcccatttattttttgcatatgccatataggaaaaatattttttagcatatgccatatcaggttattgatttttccatatgctattcgaaaactgaattaaaattctagtacttttttttttattttgagtcttttgatctattttcaagcgtctttaagatccttacacgatcttagaatcacccgtgtgcgacctttaatgcagtttgatcatttttcctattcaaaattagatatacattagagactcacaattttaaactttattttctccatatagaaaaaagtattatttgcatatgccatatgaggtcattTGAGGGTCTGTGAG-A---TT------TTT--T-GCA-------TATGCCACATGGGCCCATTT-TTTTTTT-GCATATGTCATAT-AGG-CGAAAT----ATTTT-----------TTG--GCATAT--GCCATATCAGGTTATTG-ATTTTTTCCCCGTATGCTATTCGAAAATTGAATTAAAATTCTAGTAC-TTTTTTTCC-TATTTTGAGTCTCTTTC-TCTATTTT-GATCTACTTTC-----TCGTTAAGATCC--TTACACGATCTTAGAATCATCACCGTACGCCAAAAAGT-----------------T----ACC-CTTG-----------------ATTAC----------------TTTT----------AATGCAGTTTGACCA-TTTTCCTACTCAAAATTAGAGATATACAT--------------ACT-------TGCAATCT--TAAACT-T-TA--TTTTCTCCATGTAG-AAAAAAATATTTTTT--GCATA--------TGCCATATGAGGTCA-------TTTATATTTTGCATATGCCATtacccccaacccctaaa
gi|9 : TGAGGGTCTGTTAG-GG--TT------CTT--T-GCA-------TATGCCATATGGGCCCATTTACTTTTTT-GCATATGCCATGT-AGG-CGAAGT----ATTTT-----------T-G--GCACAT--GCCATATCAGGTTATTG-TTTTTTTTTCAATATGTTATTCGAAAACTGAATTAAAATTCGAATAC-TTTTTTTTC-TATTTTGAGTCTTTTGA-TCTATTTT-GATCTATTTTCAACACTATTTAAGATCC--TTACACGATCTTAGAATCACCA--------------------------------------------TG-----------------ATGAC----------------CTTT----------TATGCAGTTTGACCA-TTTTCCAACTCAAAATTA----TATACAC----A---------ACTAGAGACTCGCAATCT--TAAACT-T-TA--TTTTCTCCATATTG-AAAAAAGTATTTTTT--GCATA--------TGCCATATGAGGTCA-------TTTATATTAAGCATATGTCAT
Alignments
lowQualScore : 1111111 111 1111111 11111111111 2222 888888888888888888888888888888888888888888888888888888888888888 2222222222222222 1111111111 1111111
lowQualScore : 5555555 3 55 000 1111111 3 2 3 0 6666 22222222222 777 33 2 3333 2 2 99 6 0 2 0 0 44 44 0 666666666666666666666666666666666666666666666666666666666666666 0000000000000000 4444444444 3 2 0 0 22 0 44 3 3 44 3 33 99999999 0000000
lowQualScore : ....... . .. ... ....... . . . . .... ........... ... .. . .... . . .. . . . . . .. .. . ............................................................... ................ .......... . . . . .. . .. . . .. . .. ........ .......
lowQualScore : 2222222 6 00 000 8888888 3 9 1 2 5555 77777777777 999 77 7 5555 7 9 11 2 8 2 2 4 22 66 4 888888888888888888888888888888888888888888888888888888888888888 4444444444444444 6666666666 3 2 5 4 44 5 22 1 1 22 1 44 11111111 0000000
consensus : TGAGGGTCTGTTAG---G---TTT-TT--T---GCA-------TATGCCATATGGGCCCATTTATTTTTTT-GCATATGCCATAT-AGG-CGAAAT----ATTTT-----------TTG--GCATAT--GCCATATCAGGTTATTG-ATTTTTTCCCCATATGCTATTCGAAAATTGAATTAAAATTCTAATAC-TTTTTTTTC-TATTTTGAGTCTTTTGATCTATTTTGA-TCTATTTTCAAGCCTCTTTAAGATCC--TTACACGATCTT--AGAATCACCACCGTACGCCAAAAAGT-----------------T----A-C-TTTG-----------------ATGAC----------------CTTT----------AATGCAGTTTGACCA-TTTTCCTACTCAAAATTAGAGATATACATACAATTAGAGACTCGCAATCT--TAAACT-T-TA--TTTTCTCCATATAG-AAAAAAGTATTTTTT--GCATA--------TGCCATATGAGGTCA-------TTTATATTTTGCATATGCCAT
Reference ( family-2837 ) : TGAGGGTCTGTTAG---G---TTT-TT--T---GCA-------TATGCCATATGGGCCCATTTATTTTTTT-GCATATGCCATAT-AGG-CGAAAT----ATTTT-----------TTG--GCATAT--GCCATATCAGGTTATTG-ATTTTTTCCCCATATGCTATTCGAAAATTGAATTAAAATTCTAATAC-TTTTTTTTC-TATTTTGAGTCTTTTGATCTATTTTGA-TCTATTTTCAAGCCTCTTTAAGATCC--TTACACGATCTT--AGAATCACCACCGTACGCCAAAAAGT-----------------T----A-C-TTTG-----------------ATGAC----------------CTTT----------AATGCAGTTTGACCA-TTTTCCTACTCAAAATTAGAGATATACATACAATTAGAGACTCGCAATCT--TAAACT-T-TA--TTTTCTCCATATAG-AAAAAAGTATTTTTT--GCATA--------TGCCATATGAGGTCA-------TTTATATTTTGCATATGCCAT
gi|1 : TATGCAATAT-AAG-CGAAAT----ATTTT-----------TTG--GCATAT--GCCATATAAGGTTATTG-ATTTTTTCC--ATATGTTATTCGAAAATTGAATTAAAATTCTAATAC-CTTTTTTTC-TATTTTTAGTCTTTTGATCTATTTTAA-TCTATTTTCAAGCCTCTTTAAGATCC--TTACACGATCTT--AGAATCACCACCGTACGCCAATAAGTGTGA-------------T----A-A-TTTT-----------------GTAAT----------------CTT
gi|1 : T-----------------T----A-CCTTTG-----------------ATGAC----------------CTTT----------AATGCAGCTTGACCA-TTTTCCTACTCAAA-TTAGAGATAT-CAT------------TCGCAATCA--TTAACT-T-TA--TTTTCTCCATATAG-AAAAAA-TATATTTT--GCATA--------TGCCATATGAGGTAA-------TTTATATTTTGCATATGTCATatttgtgactagcgttcggttcgtggtggttctgcaccgatattcagataaaagcgtggcaagtataaacacattacctttgatgacctttaatgcagcttgaccattttcctactcaaattagagatatcattcgcaatcattaactttattttctccatatagaaaaaatatattttgcatatgccatatgaggtaatttatattttgcatatgtcatgagtaacccaccccctctaacagaccct
gi|10 : tatgcaatataagcgaaatattttttggcatatgccatataaggttattgattttttccatatgttattcgaaaattgaattaaaattctaatacctttttttctatttttagtcttttgatctattttaatctattttcaagcctctttaagatccttacacgatcttagaatcaccaccgtacgccaataagtgtgataattttgtaatcttatttgtgactagcgttcggttcgtggtggttctgcaccgatattcagataaaagcgtggcaagtataaacacaGAGGGTCTGTTAG---G---ATTATT--T---GCA-------TATGTTATATGGCCCCCTGTATTTTTTT-CCATCTACCATAT-AGG-CGAAAT----ATTTT-----------TTG--GCATAT--GCCATATCAGGTTATTG-ATTTTTTCG--ATATGCTATTCGAAAATTG------AATT--AAAA--------TTC-TA-----ATTCTTTTT-TTTATTTTGAGTCT--TTTGA--TCTATTTT-GATCTATTTTCA-G---TT--ATAAACAC----------------AT-----------------T----A-CCTTTA-----------------ATGAC----------------TTTT----------AAGACAGTTTGACAA-TTGTCTTACTCAAAACTAGAGATATACATACAATTAGAGATTCGCAATCT--TAAACTATATA--TTTTCTCTATATTG-AAAAAAGTATTTTTT--GCATAATTTTTTTTTTTTTATGAGTTCATGAAAATTTTATATTTTGCATATACCATgagtaacccaccccctctaacagaccct
gi|11 : TCT-----------CTG--CCATAT-----ATGTCAGGTTATTG-ACTTTTTCC--ATATGCTATTTGAAAATTGAATTAAA-TTCTAATA---TTTTTTTA-CATTTTGAGTCTTTTGATATATTTTGC-TCTATTTTCAAGCCTCTTTAAGATCT--TCACACGATCTT--AGAATCACCA--------------------------------------------TG-----------------ATGAC----------------GTTT----------TATGTAGTTTGACCA-TTTTCCTACTCAAA-TTAGAGATATACACATAATTAGAGACTTGTTATAT--TAAACT-T-TA--TTTTCTCCATATAG--AAAAAGTATTGTTT--GCATA--------CGCCATATGAGGTCA-------TTTATATTTTGCATATGCCAat
gi|11 : atgtcgccctgatactgttcgtactacatcgaatataacgagcgggaTATATTTT--GCATA--------TGCCACATGGGcatgggtaccccactaacaaaccct
gi|12 : atgtcgccctgatactgttcgtactacatcgaatataacgagcgggatctctgccatatatgtcaggttattgactttttccatatgctatttgaaaattgaattaaattctaatatttttttacattttgagtcttttgatatattttgctctattttcaagcctctttaagatcttcacacgatcttagaatcaccatgatgacgttttatgtagtttgaccattttcctactcaaattagagatatacacataattagagacttgttatattaaactttattttctccatatagaaaaagtattgtttgcatacgccatatgaggtcattTTTTT-GCATATGCCATAT-AGA-C---ATCTTTATTTT-----------TTT--GCATATATGCCATATCAGGTTATTG-ATTTTTTCC--ATATGCTATTCGAAAATT-----------TTAATAC-TTTTT-TTC-------------------CTATTTTGAGTCT--TTTTA--TCTATTTT-GATCT---------ATTTTCAAGTATAAACACT-TA----------T-----------------T----AGC-TTTG-----------------ATGAT----------------CTTT----------AATGCAGTTTGACCA-TTTTCCTACTCAAAATTAGGGATATACATACAATAAGAGACTCACAATCT--TAAACT-T-TA--TTTTCTCCATATAG-AAGAAAGTATTTTTTTCGCATA--------TGCCATATGAGGTtaccccactaacaaaccct
gi|13 : tgtgagggtttgttaggga-----------TTT--GCATAT--GCCATATCAGGTTTTTG-ATTTTTTTCC-ATATGCTATTCG-AAATTGAATTAAAATTCTAATACTTTTTTTTTC-TATTTTGAGTCTTTTGATCTATTTTGA-TCTATTTTCAAGCCTTCTTAAGATCC--TTACACGA
gi|13 : CCTACTCAAAATTAGAGATATACATACAATTAGAGACTTGCAATCT--TAAACT-T-TA--TTTTCTCCATATAG-AAAAAAGTATTTTTT--GCATA--------TGCCATATAAGGTCA-------TTTATATTTTGCATATGCCATcaacctactcaaaattagagatatacatacaattagagacttgcaatcttaaactttattttctccatatagaaaaaagtattttttgcatatgccatataaggtcatttatattttgcatatgccatatgggtatcccccccccccccttccccataacagaccccc
gi|14 : tttgcatatgccatatcaggtttttgatttttttccatatgctattcgaaattgaattaaaattctaatactttttttttctattttgagtcttttgatctattttgatctattttcaagccttcttaagatccttacacgacaaT-AGG-CGAAAT----ATATT-----------TTG--GC---T------TATCAGGTTATTG-ATTTTTTCC--ATATGCTATTCGAAAATTTCATTACAATTCTAATA--TTTGTTTTC-TATTTTGAGTCTTTTGATCTATTTTGA-TATATTTTCAAGCCTTTTTAAGAACC--TTAAACGATCTT--TAAATCACCACCGTACGCCAAAAAAT-----------------atgggtatcccccccccccccttccccataacagaccccc
gi|15 : TGAAGGTCTGTTAG---G---GTT-TT--T---GCA-------TATGCCATATGGGTCCATTTATTTTTTT-gtgataattttgtgatg
gi|15 : gTTTTT-GCATATGCCATAT-GGGTCCATTT----ATTTT-----------TTTT-GCATAT--GCTATATCAGGTTATTA-ATTTTT---CCATATGCTATTCGAAAATTGAATTAAAATTATAATAC--TTTTTTTC-TGTTTTGAGTCTTTTGATCTAtgcatatgctatatcaggttattaatttttccatatgctattcgaaaattgaattaaaattataatactttttttctgttttgagtcttttgatcta
gi|16 : gtgaaggtctgttagggTTTT--GCATA--------TGCCATATGAGGTCA-------TTTATATTTTGCATATGCCAT
gi|16 : TATATTTT--GCATA--------TGCCATATGGGatgggtacctcctcaaacagaacctc
gi|17 : ttttgcatatgccatatgaggtcattGAGGGTTTGTTAG---G---GTT-TT--T---GCATATTTTTTATGCTATATGGACCTATTTATTtacctcctcaaacagaacctc
gi|2 : TGAGGGTCTGTTAGTTTG---TTT-TT--TTTTGCA-------TATGTCTTATGGGCTCATTTATTTTTTTCGCATATGCCATAT-AGG-CGAAAT----ATTTT-----------TTTTTGCATAT--GCCATATCAGGTTATTG-ATTTTTTTTTCATATGCTATTCGAAAATTGAATTAAAATTCTAATAC-TTTTTTT-C-TATTTTGAGTCTTTT----------GA-TCTATTTTCGAGCCTCTTTAAGATCC--TTACACGATCAT---GGATCACCAACGTATGGCAAAAAGT-----------------TG---G-C-TTTG-----------------ATGAC----------------CTTT----------TATGCAGTTTGGCCA-TTTTCCTACTCAAAATTTGAGATATACATATAACTAGAGACTCGCAATCT--TAAACT-T-TA--TTTTCTCCATATAG-ATAAACATATTTATT--GCATA--------TGTCATATGAGCTCA-------TTTATATTTAGCATAAGCCAT
gi|3 : gTGAGGGTCTGTTAG---AGTTTTT-TT--T---GCA-------TATGCCATATGGGCCCATTTATTTTTTT-ACATATGCCATAT-AGG-CGAAAT----ATTTTTATTTTATATATTA--TTATAT--A-TATATTATTTTATTGAATTTTTT--TCATATGCTATTCGAAAATTTAATTAAAATTCTTATAC-TTTTTatgggagctcacaccataacagaccct
gi|3 : agg-C-TTTA-----------------ATGAC-----------------TTA----------AATGCAGTTTGGCAA-TTTTCCTACTCAAAATTAGAGATA------------GAGACTCGAAATCT--TAAACT-T-TA--TTTTCTCCATATA--AAAAAAGTATTTTTT--GCATA--------TGCCCTATGAGG-CA-------TTTATTTTTTGCATATGCCnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntaagcctctttaatgacttaaatgcagtttggcaattttcctactcaaaattagagatagagactcgaaatcttaaactttattttctccatataaaaaaagtattttttgcatatgccctatgaggcatttattttttgcatatgccg
gi|4 : aggtgagggtctgttagagttttttttgcatatgccatatgggcccatttatttttttacatatgccatataggcgaaatatttttattttatatattattatatatatattattttattgaatttttttcatatgctattcgaaaatttaattaaaattcttatactttttnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntaagcctGAGGGTATG--AG---GG--TTT-TT--T---GCA-------TATGCCACATGAGCCCATTTATTTTTTT-GCATATGCCATAT-g
gi|4 : TTTTTT-GCATATGCCACATGAGC-CCATTT----ATTTT-----------TTT--GCATAT--GCCATATCAGGTTATTG-ATTTTTTCTCCATATGCTATTCGAAAATTGAATTAAAATTCTAATAC-TTTTTTTTC-TATTTCGAGTCTTTTCATCTATTTTGA-TCTATTTTCAAGCCTCTTTAAGGTCC--TTACACGTACTT--AGAATCACCAGCGTACGCCAAAAAGTGTGATAAATTTGTAATCT----A-T-TTTG------------------TGACTAACGTTCGCCAGTTCCTTT----------AATGCAGTTTGACCA-TTTTCCTATTCAAACTTAGAGATATACATACAATTAGAGACTCGCAATCT--TAAACT-T-TA--TTTTCTCCATATAG-AAAAAAGTATTTTTT--GCATA--------TGCCATATGAGGTAA-------TTTATATTTTGCATATGCCATcaggttattgattttttctccatatgctattcgaaaattgaattaaaattctaatacttttttttctatttcgagtcttttcatctattttgatctattttcaagcctctttaaggtccttacacgtacttagaatcaccagcgtacgccaaaaagtgtgataaatttgtaatctattttgtgactaacgttcgccagttcctttaatgcagtttgaccattttcctattcaaacttagagatatacatacaattagagactcgcaatcttaaactttattttctccatatagaaaaaagtattttttgcatatgccatatgaggtaatttatattttgcatatgccatatggccccc
gi|4 : gagggtatgagggT-TT--T---GCA-------TATGCCATATGGCCCCatggccccc
gi|5 : gagggtatgagggttttttgcatatgccacatgagcccatttatttttttgcatatgccatatcaggttattgattttttctccatatgctattcgaaaattgaattaaaattctaatacttttttttctatttcgagtcttttcatctattttgatctattttcaagcctctttaaggtccttacacgtacttagaatcaccagcgtacgccaaaaagtgtgataaatttgtaatctattttgtgactaacgttcgccagttcctttaatgcagtttgaccattttcctattcaaacttagagatatacatacaattagagactcgcaatcttaaactttattttctccatatagaaaaaagtattttttgcatatgccatatgaggtaatttataATATGCCATAT-AGG-CAAAAT----AATTT-------------G--GCATAT--GCCATATCATGTTATTG-ATTTTTTCC--ATATACTATTCGAAAATTGAATAAAAATTCTAATAC-TTTTTCTTC-TATTTTGAGTATTTTGATCTATTTTGA-TCTATTTTCAAGCCTCTTTAAGACCC--TTACACGATCTT--AGAGTCACCACCGTACGCCAAAAAGTG----------------TGATAA-C-ATTGTTATCAAGTATAAACACATTAC----------------CTTTGATGACCTTTAATGCAGTTTGACCA-TTTTCTTGCTCAAACTTAGATATATACATACAATTAGAGACTCGCAATCTTCTAAAC-----------CCGCCATAGAGAAAAAAAGTATGTTTT--GCATA--------TACCATATGACGTCA-------TTTATATTTTGCATATGCCATc
gi|6 : tatGAGGGTCTGTTAG---G---TTT-TT--TA--GCA-------TATGCTATATGGGCCCATTTATTTTTTT-GCATATGCCATAT-AAG-CGAAAT----ATTTT-----------TTA--GTATAT--GCCATATCAGGTTATTG-ATTTTTTAC--ATATGCTATTCGAAAATTGAATTAAAATTCTAATAC-TTTTTT--CATATTTTGAGTTTTTT--------TT-A-TCTATTTT-------------GATCT--T-----GATCTT--AGAATT-------T---CCGAACA-T-----------------T----A-CCTTTG-----------------ATGAC----------------CTTT----------AATGCAGTTTGACCA-TTTTCTTACTCAAAACTAGAATTATACATACAATACGAGACTCACAACCT--AAAACT-T-TATTTTTTCTCCATATAG-AAAAAGGTATTTTTT--GCATA--------TGCCATATGAGGTCA-------TTTATATTTTGCATACACCATatgggtacaccccaccccctgtcagac
gi|7 : GAGGGTCTGTTAG---G---TTT-TTATT---GCA-------TATGCCATATGGGCCCATTTATTTTTT--GCATATGCCATAT-AGG-AAAAAT----ATTTT-----------TTA--GCATAT--GCCATATCAGGTTATTG-ATTTTT---CCATATGCTATTCGAAAACTGAATTAAAATTCTAGTAC-TTTTTTTTT-TATTTTGAGTC----------TTTTGA-TCTATTTTCAAGCGTCTTTAAGATCC--TTACACGATCTT--AGAATCAC--CCGTGTGC---------------------------------------------------------GAC----------------CTTT----------AATGCAGTTTGATCATTTTTCCTATTCAAAATT--AGATATAC-----ATTAGAGACTCACAATTT--TAAACT-T-TA--TTTTCTCCATATAG-AAAAAAGTATTATTT--GCATA--------TGCCATATGAGGTCA-------TTTATATTTTGCATATGCCATcgtgttaccgatccaagaccctt
gi|8 : cTGAGGGTCTGTGAG---A---TTT-TT--T---GCA-------TATGCCACATGGGCCCATTT-TTTTTTT-GCATATGTCATAT-AGG-CGAAAT----ATTTT-----------TTG--GCATAT--GCCATATCAGGTTATTG-ATTTTTTCCCCGTATGCTATTCGAAAATTGAATTAAAATTCTAGTAC-TTTTTTTCC-TATTTTGAGTCTCTTTCTCTATTTTGA-TCTACTTT-----CTCGTTAAGATCC--TTACACGATCTT--AGAATCATCACCGTACGCCAAAAAGT-----------------T----ACC-CTTG-----------------ATTAC----------------TTTT----------AATGCAGTTTGACCA-TTTTCCTACTCAAAATTAGAGATATACAT----------ACTTGCAATCT--TAAACT-T-TA--TTTTCTCCATGTAG-AAAAAAATATTTTTT--GCATA--------TGCCATATGAGGTCA-------TTTATATTTTGCATATGCCATatgggtacccccaacccctaaa
gi|9 : TGAGGGTCTGTTAG---GG--TTC-TT--T---GCA-------TATGCCATATGGGCCCATTTACTTTTTT-GCATATGCCATGT-AGG-CGAAGT----ATTTT-----------T-G--GCACAT--GCCATATCAGGTTATTG-TTTTTTTTTCAATATGTTATTCGAAAACTGAATTAAAATTCGAATAC-TTTTTTTTC-TATTTTGAGTCTTTTGATCTATTTTGA-TCTATTTTCAACACTATTTAAGATCC--TTACACGATCTT--AGAATCACCA--------------------------------------------TG-----------------ATGAC----------------CTTT----------TATGCAGTTTGACCA-TTTTCCAACTCAAAATT----ATATAC--ACAACTAGAGACTCGCAATCT--TAAACT-T-TA--TTTTCTCCATATTG-AAAAAAGTATTTTTT--GCATA--------TGCCATATGAGGTCA-------TTTATATTAAGCATATGTCAT
Alignments
lowQualScore : 1111111 111 1111111 11111111111 2222 888888888888888888888888888888888888888888888888888888888888888 2222222222222222 1111111111 1111111
lowQualScore : 5555555 3 55 000 1111111 3 2 3 0 6666 22222222222 777 33 2 3333 2 2 99 6 0 2 0 0 44 44 0 666666666666666666666666666666666666666666666666666666666666666 0000000000000000 4444444444 3 2 0 0 22 0 44 3 3 44 3 33 99999999 0000000
lowQualScore : ....... . .. ... ....... . . . . .... ........... ... .. . .... . . .. . . . . . .. .. . ............................................................... ................ .......... . . . . .. . .. . . .. . .. ........ .......
lowQualScore : 2222222 6 00 000 8888888 3 9 1 2 5555 77777777777 999 77 7 5555 7 9 11 2 8 2 2 4 22 66 4 888888888888888888888888888888888888888888888888888888888888888 4444444444444444 6666666666 3 2 5 4 44 5 22 1 1 22 1 44 11111111 0000000
consensus : TGAGGGTCTGTTAG---G---TTT-TT--T---GCA-------TATGCCATATGGGCCCATTTATTTTTTT-GCATATGCCATAT-AGG-CGAAAT----ATTTT-----------TTG--GCATAT--GCCATATCAGGTTATTG-ATTTTTTCCCCATATGCTATTCGAAAATTGAATTAAAATTCTAATAC-TTTTTTTTC-TATTTTGAGTCTTTTGATCTATTTTGA-TCTATTTTCAAGCCTCTTTAAGATCC--TTACACGATCTT--AGAATCACCACCGTACGCCAAAAAGT-----------------T----A-C-TTTG-----------------ATGAC----------------CTTT----------AATGCAGTTTGACCA-TTTTCCTACTCAAAATTAGAGATATACATACAATTAGAGACTCGCAATCT--TAAACT-T-TA--TTTTCTCCATATAG-AAAAAAGTATTTTTT--GCATA--------TGCCATATGAGGTCA-------TTTATATTTTGCATATGCCAT
Reference ( family-2837 ) : TGAGGGTCTGTTAG---G---TTT-TT--T---GCA-------TATGCCATATGGGCCCATTTATTTTTTT-GCATATGCCATAT-AGG-CGAAAT----ATTTT-----------TTG--GCATAT--GCCATATCAGGTTATTG-ATTTTTTCCCCATATGCTATTCGAAAATTGAATTAAAATTCTAATAC-TTTTTTTTC-TATTTTGAGTCTTTTGATCTATTTTGA-TCTATTTTCAAGCCTCTTTAAGATCC--TTACACGATCTT--AGAATCACCACCGTACGCCAAAAAGT-----------------T----A-C-TTTG-----------------ATGAC----------------CTTT----------AATGCAGTTTGACCA-TTTTCCTACTCAAAATTAGAGATATACATACAATTAGAGACTCGCAATCT--TAAACT-T-TA--TTTTCTCCATATAG-AAAAAAGTATTTTTT--GCATA--------TGCCATATGAGGTCA-------TTTATATTTTGCATATGCCAT
gi|1 : TATGCAATAT-AAG-CGAAAT----ATTTT-----------TTG--GCATAT--GCCATATAAGGTTATTG-ATTTTTTCC--ATATGTTATTCGAAAATTGAATTAAAATTCTAATAC-CTTTTTTTC-TATTTTTAGTCTTTTGATCTATTTTAA-TCTATTTTCAAGCCTCTTTAAGATCC--TTACACGATCTT--AGAATCACCACCGTACGCCAATAAGTGTGA-------------T----A-A-TTTT-----------------GTAAT----------------CTT
gi|1 : T-----------------T----A-CCTTTG-----------------ATGAC----------------CTTT----------AATGCAGCTTGACCA-TTTTCCTACTCAAA-TTAGAGATAT-CAT------------TCGCAATCA--TTAACT-T-TA--TTTTCTCCATATAG-AAAAAA-TATATTTT--GCATA--------TGCCATATGAGGTAA-------TTTATATTTTGCATATGTCATatttgtgactagcgttcggttcgtggtggttctgcaccgatattcagataaaagcgtggcaagtataaacacattacctttgatgacctttaatgcagcttgaccattttcctactcaaattagagatatcattcgcaatcattaactttattttctccatatagaaaaaatatattttgcatatgccatatgaggtaatttatattttgcatatgtcatgagtaacccaccccctctaacagaccct
gi|10 : tatgcaatataagcgaaatattttttggcatatgccatataaggttattgattttttccatatgttattcgaaaattgaattaaaattctaatacctttttttctatttttagtcttttgatctattttaatctattttcaagcctctttaagatccttacacgatcttagaatcaccaccgtacgccaataagtgtgataattttgtaatcttatttgtgactagcgttcggttcgtggtggttctgcaccgatattcagataaaagcgtggcaagtataaacacaGAGGGTCTGTTAG---G---ATTATT--T---GCA-------TATGTTATATGGCCCCCTGTATTTTTTT-CCATCTACCATAT-AGG-CGAAAT----ATTTT-----------TTG--GCATAT--GCCATATCAGGTTATTG-ATTTTTTCG--ATATGCTATTCGAAAATTG------AATT--AAAA--------TTC-TA-----ATTCTTTTT-TTTATTTTGAGTCT--TTTGA--TCTATTTT-GATCTATTTTCA-G---TT--ATAAACAC----------------AT-----------------T----A-CCTTTA-----------------ATGAC----------------TTTT----------AAGACAGTTTGACAA-TTGTCTTACTCAAAACTAGAGATATACATACAATTAGAGATTCGCAATCT--TAAACTATATA--TTTTCTCTATATTG-AAAAAAGTATTTTTT--GCATAATTTTTTTTTTTTTATGAGTTCATGAAAATTTTATATTTTGCATATACCATgagtaacccaccccctctaacagaccct
gi|11 : TCT-----------CTG--CCATAT-----ATGTCAGGTTATTG-ACTTTTTCC--ATATGCTATTTGAAAATTGAATTAAA-TTCTAATA---TTTTTTTA-CATTTTGAGTCTTTTGATATATTTTGC-TCTATTTTCAAGCCTCTTTAAGATCT--TCACACGATCTT--AGAATCACCA--------------------------------------------TG-----------------ATGAC----------------GTTT----------TATGTAGTTTGACCA-TTTTCCTACTCAAA-TTAGAGATATACACATAATTAGAGACTTGTTATAT--TAAACT-T-TA--TTTTCTCCATATAG--AAAAAGTATTGTTT--GCATA--------CGCCATATGAGGTCA-------TTTATATTTTGCATATGCCAat
gi|11 : atgtcgccctgatactgttcgtactacatcgaatataacgagcgggaTATATTTT--GCATA--------TGCCACATGGGcatgggtaccccactaacaaaccct
gi|12 : atgtcgccctgatactgttcgtactacatcgaatataacgagcgggatctctgccatatatgtcaggttattgactttttccatatgctatttgaaaattgaattaaattctaatatttttttacattttgagtcttttgatatattttgctctattttcaagcctctttaagatcttcacacgatcttagaatcaccatgatgacgttttatgtagtttgaccattttcctactcaaattagagatatacacataattagagacttgttatattaaactttattttctccatatagaaaaagtattgtttgcatacgccatatgaggtcattTTTTT-GCATATGCCATAT-AGA-C---ATCTTTATTTT-----------TTT--GCATATATGCCATATCAGGTTATTG-ATTTTTTCC--ATATGCTATTCGAAAATT-----------TTAATAC-TTTTT-TTC-------------------CTATTTTGAGTCT--TTTTA--TCTATTTT-GATCT---------ATTTTCAAGTATAAACACT-TA----------T-----------------T----AGC-TTTG-----------------ATGAT----------------CTTT----------AATGCAGTTTGACCA-TTTTCCTACTCAAAATTAGGGATATACATACAATAAGAGACTCACAATCT--TAAACT-T-TA--TTTTCTCCATATAG-AAGAAAGTATTTTTTTCGCATA--------TGCCATATGAGGTtaccccactaacaaaccct
gi|13 : tgtgagggtttgttaggga-----------TTT--GCATAT--GCCATATCAGGTTTTTG-ATTTTTTTCC-ATATGCTATTCG-AAATTGAATTAAAATTCTAATACTTTTTTTTTC-TATTTTGAGTCTTTTGATCTATTTTGA-TCTATTTTCAAGCCTTCTTAAGATCC--TTACACGA
gi|13 : CCTACTCAAAATTAGAGATATACATACAATTAGAGACTTGCAATCT--TAAACT-T-TA--TTTTCTCCATATAG-AAAAAAGTATTTTTT--GCATA--------TGCCATATAAGGTCA-------TTTATATTTTGCATATGCCATcaacctactcaaaattagagatatacatacaattagagacttgcaatcttaaactttattttctccatatagaaaaaagtattttttgcatatgccatataaggtcatttatattttgcatatgccatatgggtatcccccccccccccttccccataacagaccccc
gi|14 : tttgcatatgccatatcaggtttttgatttttttccatatgctattcgaaattgaattaaaattctaatactttttttttctattttgagtcttttgatctattttgatctattttcaagccttcttaagatccttacacgacaaT-AGG-CGAAAT----ATATT-----------TTG--GC---T------TATCAGGTTATTG-ATTTTTTCC--ATATGCTATTCGAAAATTTCATTACAATTCTAATA--TTTGTTTTC-TATTTTGAGTCTTTTGATCTATTTTGA-TATATTTTCAAGCCTTTTTAAGAACC--TTAAACGATCTT--TAAATCACCACCGTACGCCAAAAAAT-----------------atgggtatcccccccccccccttccccataacagaccccc
gi|15 : TGAAGGTCTGTTAG---G---GTT-TT--T---GCA-------TATGCCATATGGGTCCATTTATTTTTTT-gtgataattttgtgatg
gi|15 : gTTTTT-GCATATGCCATAT-GGGTCCATTT----ATTTT-----------TTTT-GCATAT--GCTATATCAGGTTATTA-ATTTTT---CCATATGCTATTCGAAAATTGAATTAAAATTATAATAC--TTTTTTTC-TGTTTTGAGTCTTTTGATCTAtgcatatgctatatcaggttattaatttttccatatgctattcgaaaattgaattaaaattataatactttttttctgttttgagtcttttgatcta
gi|16 : gtgaaggtctgttagggTTTT--GCATA--------TGCCATATGAGGTCA-------TTTATATTTTGCATATGCCAT
gi|16 : TATATTTT--GCATA--------TGCCATATGGGatgggtacctcctcaaacagaacctc
gi|17 : ttttgcatatgccatatgaggtcattGAGGGTTTGTTAG---G---GTT-TT--T---GCATATTTTTTATGCTATATGGACCTATTTATTtacctcctcaaacagaacctc
gi|2 : TGAGGGTCTGTTAGTTTG---TTT-TT--TTTTGCA-------TATGTCTTATGGGCTCATTTATTTTTTTCGCATATGCCATAT-AGG-CGAAAT----ATTTT-----------TTTTTGCATAT--GCCATATCAGGTTATTG-ATTTTTTTTTCATATGCTATTCGAAAATTGAATTAAAATTCTAATAC-TTTTTTT-C-TATTTTGAGTCTTTT----------GA-TCTATTTTCGAGCCTCTTTAAGATCC--TTACACGATCAT---GGATCACCAACGTATGGCAAAAAGT-----------------TG---G-C-TTTG-----------------ATGAC----------------CTTT----------TATGCAGTTTGGCCA-TTTTCCTACTCAAAATTTGAGATATACATATAACTAGAGACTCGCAATCT--TAAACT-T-TA--TTTTCTCCATATAG-ATAAACATATTTATT--GCATA--------TGTCATATGAGCTCA-------TTTATATTTAGCATAAGCCAT
gi|3 : gTGAGGGTCTGTTAG---AGTTTTT-TT--T---GCA-------TATGCCATATGGGCCCATTTATTTTTTT-ACATATGCCATAT-AGG-CGAAAT----ATTTTTATTTTATATATTA--TTATAT--A-TATATTATTTTATTGAATTTTTT--TCATATGCTATTCGAAAATTTAATTAAAATTCTTATAC-TTTTTatgggagctcacaccataacagaccct
gi|3 : agg-C-TTTA-----------------ATGAC-----------------TTA----------AATGCAGTTTGGCAA-TTTTCCTACTCAAAATTAGAGATA------------GAGACTCGAAATCT--TAAACT-T-TA--TTTTCTCCATATA--AAAAAAGTATTTTTT--GCATA--------TGCCCTATGAGG-CA-------TTTATTTTTTGCATATGCCnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntaagcctctttaatgacttaaatgcagtttggcaattttcctactcaaaattagagatagagactcgaaatcttaaactttattttctccatataaaaaaagtattttttgcatatgccctatgaggcatttattttttgcatatgccg
gi|4 : aggtgagggtctgttagagttttttttgcatatgccatatgggcccatttatttttttacatatgccatataggcgaaatatttttattttatatattattatatatatattattttattgaatttttttcatatgctattcgaaaatttaattaaaattcttatactttttnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntaagcctGAGGGTATG--AG---GG--TTT-TT--T---GCA-------TATGCCACATGAGCCCATTTATTTTTTT-GCATATGCCATAT-g
gi|4 : TTTTTT-GCATATGCCACATGAGC-CCATTT----ATTTT-----------TTT--GCATAT--GCCATATCAGGTTATTG-ATTTTTTCTCCATATGCTATTCGAAAATTGAATTAAAATTCTAATAC-TTTTTTTTC-TATTTCGAGTCTTTTCATCTATTTTGA-TCTATTTTCAAGCCTCTTTAAGGTCC--TTACACGTACTT--AGAATCACCAGCGTACGCCAAAAAGTGTGATAAATTTGTAATCT----A-T-TTTG------------------TGACTAACGTTCGCCAGTTCCTTT----------AATGCAGTTTGACCA-TTTTCCTATTCAAACTTAGAGATATACATACAATTAGAGACTCGCAATCT--TAAACT-T-TA--TTTTCTCCATATAG-AAAAAAGTATTTTTT--GCATA--------TGCCATATGAGGTAA-------TTTATATTTTGCATATGCCATcaggttattgattttttctccatatgctattcgaaaattgaattaaaattctaatacttttttttctatttcgagtcttttcatctattttgatctattttcaagcctctttaaggtccttacacgtacttagaatcaccagcgtacgccaaaaagtgtgataaatttgtaatctattttgtgactaacgttcgccagttcctttaatgcagtttgaccattttcctattcaaacttagagatatacatacaattagagactcgcaatcttaaactttattttctccatatagaaaaaagtattttttgcatatgccatatgaggtaatttatattttgcatatgccatatggccccc
gi|4 : gagggtatgagggT-TT--T---GCA-------TATGCCATATGGCCCCatggccccc
gi|5 : gagggtatgagggttttttgcatatgccacatgagcccatttatttttttgcatatgccatatcaggttattgattttttctccatatgctattcgaaaattgaattaaaattctaatacttttttttctatttcgagtcttttcatctattttgatctattttcaagcctctttaaggtccttacacgtacttagaatcaccagcgtacgccaaaaagtgtgataaatttgtaatctattttgtgactaacgttcgccagttcctttaatgcagtttgaccattttcctattcaaacttagagatatacatacaattagagactcgcaatcttaaactttattttctccatatagaaaaaagtattttttgcatatgccatatgaggtaatttataATATGCCATAT-AGG-CAAAAT----AATTT-------------G--GCATAT--GCCATATCATGTTATTG-ATTTTTTCC--ATATACTATTCGAAAATTGAATAAAAATTCTAATAC-TTTTTCTTC-TATTTTGAGTATTTTGATCTATTTTGA-TCTATTTTCAAGCCTCTTTAAGACCC--TTACACGATCTT--AGAGTCACCACCGTACGCCAAAAAGTG----------------TGATAA-C-ATTGTTATCAAGTATAAACACATTAC----------------CTTTGATGACCTTTAATGCAGTTTGACCA-TTTTCTTGCTCAAACTTAGATATATACATACAATTAGAGACTCGCAATCTTCTAAAC-----------CCGCCATAGAGAAAAAAAGTATGTTTT--GCATA--------TACCATATGACGTCA-------TTTATATTTTGCATATGCCATc
gi|6 : tatGAGGGTCTGTTAG---G---TTT-TT--TA--GCA-------TATGCTATATGGGCCCATTTATTTTTTT-GCATATGCCATAT-AAG-CGAAAT----ATTTT-----------TTA--GTATAT--GCCATATCAGGTTATTG-ATTTTTTAC--ATATGCTATTCGAAAATTGAATTAAAATTCTAATAC-TTTTTT--CATATTTTGAGTTTTTT--------TT-A-TCTATTTT-------------GATCT--T-----GATCTT--AGAATT-------T---CCGAACA-T-----------------T----A-CCTTTG-----------------ATGAC----------------CTTT----------AATGCAGTTTGACCA-TTTTCTTACTCAAAACTAGAATTATACATACAATACGAGACTCACAACCT--AAAACT-T-TATTTTTTCTCCATATAG-AAAAAGGTATTTTTT--GCATA--------TGCCATATGAGGTCA-------TTTATATTTTGCATACACCATatgggtacaccccaccccctgtcagac
gi|7 : GAGGGTCTGTTAG---G---TTT-TTATT---GCA-------TATGCCATATGGGCCCATTTATTTTTT--GCATATGCCATAT-AGG-AAAAAT----ATTTT-----------TTA--GCATAT--GCCATATCAGGTTATTG-ATTTTT---CCATATGCTATTCGAAAACTGAATTAAAATTCTAGTAC-TTTTTTTTT-TATTTTGAGTC----------TTTTGA-TCTATTTTCAAGCGTCTTTAAGATCC--TTACACGATCTT--AGAATCAC--CCGTGTGC---------------------------------------------------------GAC----------------CTTT----------AATGCAGTTTGATCATTTTTCCTATTCAAAATT--AGATATAC-----ATTAGAGACTCACAATTT--TAAACT-T-TA--TTTTCTCCATATAG-AAAAAAGTATTATTT--GCATA--------TGCCATATGAGGTCA-------TTTATATTTTGCATATGCCATcgtgttaccgatccaagaccctt
gi|8 : cTGAGGGTCTGTGAG---A---TTT-TT--T---GCA-------TATGCCACATGGGCCCATTT-TTTTTTT-GCATATGTCATAT-AGG-CGAAAT----ATTTT-----------TTG--GCATAT--GCCATATCAGGTTATTG-ATTTTTTCCCCGTATGCTATTCGAAAATTGAATTAAAATTCTAGTAC-TTTTTTTCC-TATTTTGAGTCTCTTTCTCTATTTTGA-TCTACTTT-----CTCGTTAAGATCC--TTACACGATCTT--AGAATCATCACCGTACGCCAAAAAGT-----------------T----ACC-CTTG-----------------ATTAC----------------TTTT----------AATGCAGTTTGACCA-TTTTCCTACTCAAAATTAGAGATATACAT----------ACTTGCAATCT--TAAACT-T-TA--TTTTCTCCATGTAG-AAAAAAATATTTTTT--GCATA--------TGCCATATGAGGTCA-------TTTATATTTTGCATATGCCATatgggtacccccaacccctaaa
gi|9 : TGAGGGTCTGTTAG---GG--TTC-TT--T---GCA-------TATGCCATATGGGCCCATTTACTTTTTT-GCATATGCCATGT-AGG-CGAAGT----ATTTT-----------T-G--GCACAT--GCCATATCAGGTTATTG-TTTTTTTTTCAATATGTTATTCGAAAACTGAATTAAAATTCGAATAC-TTTTTTTTC-TATTTTGAGTCTTTTGATCTATTTTGA-TCTATTTTCAACACTATTTAAGATCC--TTACACGATCTT--AGAATCACCA--------------------------------------------TG-----------------ATGAC----------------CTTT----------TATGCAGTTTGACCA-TTTTCCAACTCAAAATT----ATATAC--ACAACTAGAGACTCGCAATCT--TAAACT-T-TA--TTTTCTCCATATTG-AAAAAAGTATTTTTT--GCATA--------TGCCATATGAGGTCA-------TTTATATTAAGCATATGTCAT
blockSeqs : TTTG . AT TTT TATTTTT C G T CTTT TATTTTATATA TTT AT A TTTC T A GA G A AT CA CCGTACGCCAAAAAGTGTGATAACATTGTTATCAAGTATAAACAC TAACGTTCGCCAGTTC GATGACCTTT T A AC TC A A TT A TC ATTTTTTT TGAAAAT
blockSeqs : AGTT . . A . . . . . . TT . . CTCC . . GA G A . . GCGTACGCCAAAAAGTGTGATAAATTTGTAATCTATTTTG . . . A AT . . . . . . . .
blockSeqs : GG . . . . . . . . . G . . CCCC . . GA . A . . ACGTATGGCAAAAAGTTGGCTTTG . . . A AC . . . . . . . .
blockSeqs : GG . . . . . . . . . G . . TTCA . . GA . A . . CCGTACGCCAAAAAGTTACCCTTG . . . A AC . . . . . . . .
blockSeqs : G . . . . . . . . . T . . TCC . . CA . A . . TCCGAACATTACCTTTG . . . A AT . . . . . . . .
blockSeqs : G . . . . . . . . . T . . CG . . GA . A . . CTTATTAGCTTTG . . . C AC . . . . . . . .
blockSeqs : G . . . . . . . . . G . . CC . . TC . A . . ATTACCTTTA . . . C AC . . . . . . . .
blockSeqs : G . . . . . . . . . A . . CC . . GA . A . . CCGTGTGC . . . A AC . . . . . . . .
blockSeqs : A . . . . . . . . . T . . CC . . T . . . . TG . . . A AC . . . . . . . .
blockSeqs : . . . . . . . . . G . . CC . . . . . . . TG . . . A . . . . . . . . .
blockSeqs : . . . . . A . . TC . . . . . . . . . . A . . . . . . . . .
blockSeqs : . . . . A . . CC . . . . . . . . . . . . . . . . .
blockSeqs : . . G . . AC . . . . .
blockSeqs : . G . . CC . . .
blockSeqs : . .
blockSeqCons : AC
originalCons : TGAGGGTCTGTTAG---G---TTT-TT--T---GCA-------TATGCCATATGGGCCCATTTATTTTTTT-GCATATGCCATAT-AGG-CGAAAT----ATTTT-----------TTG--GCATAT--GCCATATCAGGTTATTG-ATTTTTTCCCCATATGCTATTCGAAAATTGAATTAAAATTCTAATAC-TTTTTTTTC-TATTTTGAGTCTTTTGATCTATTTTGA-TCTATTTTCAAGCCTCTTTAAGATCC--TTACACGATCTT--AGAATCACCACCGTACGCCAAAAAGT-----------------T----A-C-TTTG-----------------ATGAC----------------CTTT----------AATGCAGTTTGACCA-TTTTCCTACTCAAAATTAGAGATATACATACAATTAGAGACTCGCAATCT--TAAACT-T-TA--TTTTCTCCATATAG-AAAAAAGTATTTTTT--GCATA--------TGCCATATGAGGTCA-------TTTATATTTTGCATATGCCAT
finalCons : TGAGGGTCTGTTAG---G---TTT-TT--T---GCA-------TATGCCATATGGGCCCATTTATTTTTTT-GCATATGCCATAT-AGG-CGAAAT----ATTTT-----------TTG--GCATAT--GCCATATCAGGTTATTG-ATTTTTTCCCCATATGCTATTCGAAAATTGAATTAAAATTCTAATAC-TTTTTTTTC-TATTTTGAGTCTTTTGATCTATTTTGA-TCTATTTTCAAGCCTCTTTAAGATCC--TTACACGATCTT--AGAATCACCACCGTACGCCAAAAAGT-----------------T----A-C-TTTG-----------------ATGAC----------------CTTT----------AATGCAGTTTGACCA-TTTTCCTACTCAAAATTAGAGATATACATACAATTAGAGACTCGCAATCT--TAAACT-T-TA--TTTTCTCCATATAG-AAAAAAGTATTTTTT--GCATA--------TGCCATATGAGGTCA-------TTTATATTTTGCATATGCCAT
Alignments
lowQualScore : 1111111 111 1111111 11111111111 2222 888888888888888888888888888888888888888888888888888888888888888 2222222222222222 1111111111 1111111
lowQualScore : 5555555 3 55 000 1111111 3 2 3 0 6666 22222222222 777 33 2 3333 2 2 99 6 0 2 0 0 44 44 0 666666666666666666666666666666666666666666666666666666666666666 0000000000000000 4444444444 3 2 0 0 22 0 44 3 3 44 3 33 99999999 0000000
lowQualScore : ....... . .. ... ....... . . . . .... ........... ... .. . .... . . .. . . . . . .. .. . ............................................................... ................ .......... . . . . .. . .. . . .. . .. ........ .......
lowQualScore : 2222222 6 00 000 8888888 3 9 1 2 5555 77777777777 999 77 7 5555 7 9 11 2 8 2 2 4 22 66 4 888888888888888888888888888888888888888888888888888888888888888 4444444444444444 6666666666 3 2 5 4 44 5 22 1 1 22 1 44 11111111 0000000
consensus : TGAGGGTCTGTTAG---G---TTT-TT--T---GCA-------TATGCCATATGGGCCCATTTATTTTTTT-GCATATGCCATAT-AGG-CGAAAT----ATTTT-----------TTG--GCATAT--GCCATATCAGGTTATTG-ATTTTTTCCCCATATGCTATTCGAAAATTGAATTAAAATTCTAATAC-TTTTTTTTC-TATTTTGAGTCTTTTGATCTATTTTGA-TCTATTTTCAAGCCTCTTTAAGATCC--TTACACGATCTT--AGAATCACCACCGTACGCCAAAAAGT-----------------T----A-C-TTTG-----------------ATGAC----------------CTTT----------AATGCAGTTTGACCA-TTTTCCTACTCAAAATTAGAGATATACATACAATTAGAGACTCGCAATCT--TAAACT-T-TA--TTTTCTCCATATAG-AAAAAAGTATTTTTT--GCATA--------TGCCATATGAGGTCA-------TTTATATTTTGCATATGCCAT
Reference ( family-2837 ) : TGAGGGTCTGTTAG---G---TTT-TT--T---GCA-------TATGCCATATGGGCCCATTTATTTTTTT-GCATATGCCATAT-AGG-CGAAAT----ATTTT-----------TTG--GCATAT--GCCATATCAGGTTATTG-ATTTTTTCCCCATATGCTATTCGAAAATTGAATTAAAATTCTAATAC-TTTTTTTTC-TATTTTGAGTCTTTTGATCTATTTTGA-TCTATTTTCAAGCCTCTTTAAGATCC--TTACACGATCTT--AGAATCACCACCGTACGCCAAAAAGT-----------------T----A-C-TTTG-----------------ATGAC----------------CTTT----------AATGCAGTTTGACCA-TTTTCCTACTCAAAATTAGAGATATACATACAATTAGAGACTCGCAATCT--TAAACT-T-TA--TTTTCTCCATATAG-AAAAAAGTATTTTTT--GCATA--------TGCCATATGAGGTCA-------TTTATATTTTGCATATGCCAT
gi|1 : TATGCAATAT-AAG-CGAAAT----ATTTT-----------TTG--GCATAT--GCCATATAAGGTTATTG-ATTTTTTCC--ATATGTTATTCGAAAATTGAATTAAAATTCTAATAC-CTTTTTTTC-TATTTTTAGTCTTTTGATCTATTTTAA-TCTATTTTCAAGCCTCTTTAAGATCC--TTACACGATCTT--AGAATCACCACCGTACGCCAATAAGTGTGA-------------T----A-A-TTTT-----------------GTAAT----------------CTT
gi|1 : T-----------------T----A-CCTTTG-----------------ATGAC----------------CTTT----------AATGCAGCTTGACCA-TTTTCCTACTCAAA-TTAGAGATAT-CAT------------TCGCAATCA--TTAACT-T-TA--TTTTCTCCATATAG-AAAAAA-TATATTTT--GCATA--------TGCCATATGAGGTAA-------TTTATATTTTGCATATGTCATatttgtgactagcgttcggttcgtggtggttctgcaccgatattcagataaaagcgtggcaagtataaacacattacctttgatgacctttaatgcagcttgaccattttcctactcaaattagagatatcattcgcaatcattaactttattttctccatatagaaaaaatatattttgcatatgccatatgaggtaatttatattttgcatatgtcatgagtaacccaccccctctaacagaccct
gi|10 : tatgcaatataagcgaaatattttttggcatatgccatataaggttattgattttttccatatgttattcgaaaattgaattaaaattctaatacctttttttctatttttagtcttttgatctattttaatctattttcaagcctctttaagatccttacacgatcttagaatcaccaccgtacgccaataagtgtgataattttgtaatcttatttgtgactagcgttcggttcgtggtggttctgcaccgatattcagataaaagcgtggcaagtataaacacaGAGGGTCTGTTAG---G---ATTATT--T---GCA-------TATGTTATATGGCCCCCTGTATTTTTTT-CCATCTACCATAT-AGG-CGAAAT----ATTTT-----------TTG--GCATAT--GCCATATCAGGTTATTG-ATTTTTTCG--ATATGCTATTCGAAAATTG------AATT--AAAA--------TTC-TA-----ATTCTTTTT-TTTATTTTGAGTCT--TTTGA--TCTATTTT-GATCTATTTTCA-G---TT--ATAAACAC----------------AT-----------------T----A-CCTTTA-----------------ATGAC----------------TTTT----------AAGACAGTTTGACAA-TTGTCTTACTCAAAACTAGAGATATACATACAATTAGAGATTCGCAATCT--TAAACTATATA--TTTTCTCTATATTG-AAAAAAGTATTTTTT--GCATAATTTTTTTTTTTTTATGAGTTCATGAAAATTTTATATTTTGCATATACCATgagtaacccaccccctctaacagaccct
gi|11 : TCT-----------CTG--CCATAT-----ATGTCAGGTTATTG-ACTTTTTCC--ATATGCTATTTGAAAATTGAATTAAA-TTCTAATA---TTTTTTTA-CATTTTGAGTCTTTTGATATATTTTGC-TCTATTTTCAAGCCTCTTTAAGATCT--TCACACGATCTT--AGAATCACCA--------------------------------------------TG-----------------ATGAC----------------GTTT----------TATGTAGTTTGACCA-TTTTCCTACTCAAA-TTAGAGATATACACATAATTAGAGACTTGTTATAT--TAAACT-T-TA--TTTTCTCCATATAG--AAAAAGTATTGTTT--GCATA--------CGCCATATGAGGTCA-------TTTATATTTTGCATATGCCAat
gi|11 : atgtcgccctgatactgttcgtactacatcgaatataacgagcgggaTATATTTT--GCATA--------TGCCACATGGGcatgggtaccccactaacaaaccct
gi|12 : atgtcgccctgatactgttcgtactacatcgaatataacgagcgggatctctgccatatatgtcaggttattgactttttccatatgctatttgaaaattgaattaaattctaatatttttttacattttgagtcttttgatatattttgctctattttcaagcctctttaagatcttcacacgatcttagaatcaccatgatgacgttttatgtagtttgaccattttcctactcaaattagagatatacacataattagagacttgttatattaaactttattttctccatatagaaaaagtattgtttgcatacgccatatgaggtcattTTTTT-GCATATGCCATAT-AGA-C---ATCTTTATTTT-----------TTT--GCATATATGCCATATCAGGTTATTG-ATTTTTTCC--ATATGCTATTCGAAAATT-----------TTAATAC-TTTTT-TTC-------------------CTATTTTGAGTCT--TTTTA--TCTATTTT-GATCT---------ATTTTCAAGTATAAACACT-TA----------T-----------------T----AGC-TTTG-----------------ATGAT----------------CTTT----------AATGCAGTTTGACCA-TTTTCCTACTCAAAATTAGGGATATACATACAATAAGAGACTCACAATCT--TAAACT-T-TA--TTTTCTCCATATAG-AAGAAAGTATTTTTTTCGCATA--------TGCCATATGAGGTtaccccactaacaaaccct
gi|13 : tgtgagggtttgttaggga-----------TTT--GCATAT--GCCATATCAGGTTTTTG-ATTTTTTTCC-ATATGCTATTCG-AAATTGAATTAAAATTCTAATACTTTTTTTTTC-TATTTTGAGTCTTTTGATCTATTTTGA-TCTATTTTCAAGCCTTCTTAAGATCC--TTACACGA
gi|13 : CCTACTCAAAATTAGAGATATACATACAATTAGAGACTTGCAATCT--TAAACT-T-TA--TTTTCTCCATATAG-AAAAAAGTATTTTTT--GCATA--------TGCCATATAAGGTCA-------TTTATATTTTGCATATGCCATcaacctactcaaaattagagatatacatacaattagagacttgcaatcttaaactttattttctccatatagaaaaaagtattttttgcatatgccatataaggtcatttatattttgcatatgccatatgggtatcccccccccccccttccccataacagaccccc
gi|14 : tttgcatatgccatatcaggtttttgatttttttccatatgctattcgaaattgaattaaaattctaatactttttttttctattttgagtcttttgatctattttgatctattttcaagccttcttaagatccttacacgacaaT-AGG-CGAAAT----ATATT-----------TTG--GC---T------TATCAGGTTATTG-ATTTTTTCC--ATATGCTATTCGAAAATTTCATTACAATTCTAATA--TTTGTTTTC-TATTTTGAGTCTTTTGATCTATTTTGA-TATATTTTCAAGCCTTTTTAAGAACC--TTAAACGATCTT--TAAATCACCACCGTACGCCAAAAAAT-----------------atgggtatcccccccccccccttccccataacagaccccc
gi|15 : TGAAGGTCTGTTAG---G---GTT-TT--T---GCA-------TATGCCATATGGGTCCATTTATTTTTTT-gtgataattttgtgatg
gi|15 : gTTTTT-GCATATGCCATAT-GGGTCCATTT----ATTTT-----------TTTT-GCATAT--GCTATATCAGGTTATTA-ATTTTT---CCATATGCTATTCGAAAATTGAATTAAAATTATAATAC--TTTTTTTC-TGTTTTGAGTCTTTTGATCTAtgcatatgctatatcaggttattaatttttccatatgctattcgaaaattgaattaaaattataatactttttttctgttttgagtcttttgatcta
gi|16 : gtgaaggtctgttagggTTTT--GCATA--------TGCCATATGAGGTCA-------TTTATATTTTGCATATGCCAT
gi|16 : TATATTTT--GCATA--------TGCCATATGGGatgggtacctcctcaaacagaacctc
gi|17 : ttttgcatatgccatatgaggtcattGAGGGTTTGTTAG---G---GTT-TT--T---GCATATTTTTTATGCTATATGGACCTATTTATTtacctcctcaaacagaacctc
gi|2 : TGAGGGTCTGTTAGTTTG---TTT-TT--TTTTGCA-------TATGTCTTATGGGCTCATTTATTTTTTTCGCATATGCCATAT-AGG-CGAAAT----ATTTT-----------TTTTTGCATAT--GCCATATCAGGTTATTG-ATTTTTTTTTCATATGCTATTCGAAAATTGAATTAAAATTCTAATAC-TTTTTTT-C-TATTTTGAGTCTTTT----------GA-TCTATTTTCGAGCCTCTTTAAGATCC--TTACACGATCAT---GGATCACCAACGTATGGCAAAAAGT-----------------TG---G-C-TTTG-----------------ATGAC----------------CTTT----------TATGCAGTTTGGCCA-TTTTCCTACTCAAAATTTGAGATATACATATAACTAGAGACTCGCAATCT--TAAACT-T-TA--TTTTCTCCATATAG-ATAAACATATTTATT--GCATA--------TGTCATATGAGCTCA-------TTTATATTTAGCATAAGCCAT
gi|3 : gTGAGGGTCTGTTAG---AGTTTTT-TT--T---GCA-------TATGCCATATGGGCCCATTTATTTTTTT-ACATATGCCATAT-AGG-CGAAAT----ATTTTTATTTTATATATTA--TTATAT--A-TATATTATTTTATTGAATTTTTT--TCATATGCTATTCGAAAATTTAATTAAAATTCTTATAC-TTTTTatgggagctcacaccataacagaccct
gi|3 : agg-C-TTTA-----------------ATGAC-----------------TTA----------AATGCAGTTTGGCAA-TTTTCCTACTCAAAATTAGAGATA------------GAGACTCGAAATCT--TAAACT-T-TA--TTTTCTCCATATA--AAAAAAGTATTTTTT--GCATA--------TGCCCTATGAGG-CA-------TTTATTTTTTGCATATGCCnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntaagcctctttaatgacttaaatgcagtttggcaattttcctactcaaaattagagatagagactcgaaatcttaaactttattttctccatataaaaaaagtattttttgcatatgccctatgaggcatttattttttgcatatgccg
gi|4 : aggtgagggtctgttagagttttttttgcatatgccatatgggcccatttatttttttacatatgccatataggcgaaatatttttattttatatattattatatatatattattttattgaatttttttcatatgctattcgaaaatttaattaaaattcttatactttttnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntaagcctGAGGGTATG--AG---GG--TTT-TT--T---GCA-------TATGCCACATGAGCCCATTTATTTTTTT-GCATATGCCATAT-g
gi|4 : TTTTTT-GCATATGCCACATGAGC-CCATTT----ATTTT-----------TTT--GCATAT--GCCATATCAGGTTATTG-ATTTTTTCTCCATATGCTATTCGAAAATTGAATTAAAATTCTAATAC-TTTTTTTTC-TATTTCGAGTCTTTTCATCTATTTTGA-TCTATTTTCAAGCCTCTTTAAGGTCC--TTACACGTACTT--AGAATCACCAGCGTACGCCAAAAAGTGTGATAAATTTGTAATCT----A-T-TTTG------------------TGACTAACGTTCGCCAGTTCCTTT----------AATGCAGTTTGACCA-TTTTCCTATTCAAACTTAGAGATATACATACAATTAGAGACTCGCAATCT--TAAACT-T-TA--TTTTCTCCATATAG-AAAAAAGTATTTTTT--GCATA--------TGCCATATGAGGTAA-------TTTATATTTTGCATATGCCATcaggttattgattttttctccatatgctattcgaaaattgaattaaaattctaatacttttttttctatttcgagtcttttcatctattttgatctattttcaagcctctttaaggtccttacacgtacttagaatcaccagcgtacgccaaaaagtgtgataaatttgtaatctattttgtgactaacgttcgccagttcctttaatgcagtttgaccattttcctattcaaacttagagatatacatacaattagagactcgcaatcttaaactttattttctccatatagaaaaaagtattttttgcatatgccatatgaggtaatttatattttgcatatgccatatggccccc
gi|4 : gagggtatgagggT-TT--T---GCA-------TATGCCATATGGCCCCatggccccc
gi|5 : gagggtatgagggttttttgcatatgccacatgagcccatttatttttttgcatatgccatatcaggttattgattttttctccatatgctattcgaaaattgaattaaaattctaatacttttttttctatttcgagtcttttcatctattttgatctattttcaagcctctttaaggtccttacacgtacttagaatcaccagcgtacgccaaaaagtgtgataaatttgtaatctattttgtgactaacgttcgccagttcctttaatgcagtttgaccattttcctattcaaacttagagatatacatacaattagagactcgcaatcttaaactttattttctccatatagaaaaaagtattttttgcatatgccatatgaggtaatttataATATGCCATAT-AGG-CAAAAT----AATTT-------------G--GCATAT--GCCATATCATGTTATTG-ATTTTTTCC--ATATACTATTCGAAAATTGAATAAAAATTCTAATAC-TTTTTCTTC-TATTTTGAGTATTTTGATCTATTTTGA-TCTATTTTCAAGCCTCTTTAAGACCC--TTACACGATCTT--AGAGTCACCACCGTACGCCAAAAAGTG----------------TGATAA-C-ATTGTTATCAAGTATAAACACATTAC----------------CTTTGATGACCTTTAATGCAGTTTGACCA-TTTTCTTGCTCAAACTTAGATATATACATACAATTAGAGACTCGCAATCTTCTAAAC-----------CCGCCATAGAGAAAAAAAGTATGTTTT--GCATA--------TACCATATGACGTCA-------TTTATATTTTGCATATGCCATc
gi|6 : tatGAGGGTCTGTTAG---G---TTT-TT--TA--GCA-------TATGCTATATGGGCCCATTTATTTTTTT-GCATATGCCATAT-AAG-CGAAAT----ATTTT-----------TTA--GTATAT--GCCATATCAGGTTATTG-ATTTTTTAC--ATATGCTATTCGAAAATTGAATTAAAATTCTAATAC-TTTTTT--CATATTTTGAGTTTTTT--------TT-A-TCTATTTT-------------GATCT--T-----GATCTT--AGAATT-------T---CCGAACA-T-----------------T----A-CCTTTG-----------------ATGAC----------------CTTT----------AATGCAGTTTGACCA-TTTTCTTACTCAAAACTAGAATTATACATACAATACGAGACTCACAACCT--AAAACT-T-TATTTTTTCTCCATATAG-AAAAAGGTATTTTTT--GCATA--------TGCCATATGAGGTCA-------TTTATATTTTGCATACACCATatgggtacaccccaccccctgtcagac
gi|7 : GAGGGTCTGTTAG---G---TTT-TTATT---GCA-------TATGCCATATGGGCCCATTTATTTTTT--GCATATGCCATAT-AGG-AAAAAT----ATTTT-----------TTA--GCATAT--GCCATATCAGGTTATTG-ATTTTT---CCATATGCTATTCGAAAACTGAATTAAAATTCTAGTAC-TTTTTTTTT-TATTTTGAGTC----------TTTTGA-TCTATTTTCAAGCGTCTTTAAGATCC--TTACACGATCTT--AGAATCAC--CCGTGTGC---------------------------------------------------------GAC----------------CTTT----------AATGCAGTTTGATCATTTTTCCTATTCAAAATT--AGATATAC-----ATTAGAGACTCACAATTT--TAAACT-T-TA--TTTTCTCCATATAG-AAAAAAGTATTATTT--GCATA--------TGCCATATGAGGTCA-------TTTATATTTTGCATATGCCATcgtgttaccgatccaagaccctt
gi|8 : cTGAGGGTCTGTGAG---A---TTT-TT--T---GCA-------TATGCCACATGGGCCCATTT-TTTTTTT-GCATATGTCATAT-AGG-CGAAAT----ATTTT-----------TTG--GCATAT--GCCATATCAGGTTATTG-ATTTTTTCCCCGTATGCTATTCGAAAATTGAATTAAAATTCTAGTAC-TTTTTTTCC-TATTTTGAGTCTCTTTCTCTATTTTGA-TCTACTTT-----CTCGTTAAGATCC--TTACACGATCTT--AGAATCATCACCGTACGCCAAAAAGT-----------------T----ACC-CTTG-----------------ATTAC----------------TTTT----------AATGCAGTTTGACCA-TTTTCCTACTCAAAATTAGAGATATACAT----------ACTTGCAATCT--TAAACT-T-TA--TTTTCTCCATGTAG-AAAAAAATATTTTTT--GCATA--------TGCCATATGAGGTCA-------TTTATATTTTGCATATGCCATatgggtacccccaacccctaaa
gi|9 : TGAGGGTCTGTTAG---GG--TTC-TT--T---GCA-------TATGCCATATGGGCCCATTTACTTTTTT-GCATATGCCATGT-AGG-CGAAGT----ATTTT-----------T-G--GCACAT--GCCATATCAGGTTATTG-TTTTTTTTTCAATATGTTATTCGAAAACTGAATTAAAATTCGAATAC-TTTTTTTTC-TATTTTGAGTCTTTTGATCTATTTTGA-TCTATTTTCAACACTATTTAAGATCC--TTACACGATCTT--AGAATCACCA--------------------------------------------TG-----------------ATGAC----------------CTTT----------TATGCAGTTTGACCA-TTTTCCAACTCAAAATT----ATATAC--ACAACTAGAGACTCGCAATCT--TAAACT-T-TA--TTTTCTCCATATTG-AAAAAAGTATTTTTT--GCATA--------TGCCATATGAGGTCA-------TTTATATTAAGCATATGTCAT