lowQualScore : 3333333333333333333333333333333333333333333333333333333333333333333333333333333 111111111 111111111111111111
lowQualScore : 33 4444444444444444444444444444444444444444444444444444444444444444444444444444444 1 111 1 1 11 333333333333 1 1 1 9999999999999999999999999999999999999999999999999999999999999999999999999999999999 1111 1 55 222 11 1111 2222222 1 1 1 111 111 666 6666666666666 33 333 1 22222 555555555555555555555555555555555555555555555555555 1 1 1 22 33 33333333333333333 1 666666666666666666 1111 22222222 1 11 11 111 222 33333 000000000 333 22 1 222222222222222222 11 777 2222
lowQualScore : 22 6 6 7777777777777777777777777777777777777777777777777777777777777777777777777777777 0 777 2 3 6 6 4 7 4 6 8 5 1 6 0 88 3 77 6 777777777777 6 6 1 8 1 6 5 6 6 0 1 8888888888888888888888888888888888888888888888888888888888888888888888888888888888 7777 5 55 6 9 6 4 6 5 5 2 4 888888 33 66 88 1 111 11 0 5 2222 3 6666666 6 5 5 777 3 111 333 2 5555555555555 0 555 11 3 3 0 777 2 0 2 33333 777777777777777777777777777777777777777777777777777 0 66 6 9 2 7 0 33 9 22 44 00 3 66666666666666666 0 6 8 999999999999999999 0 444 7777 8 99999999 1 11 11 8 888 6 6 6 3 333 9 6 4 6 6 11111 6 6 666666666 6 666 33 7 4 7 4 3 666666666666666666 00 6 4 6 6 3 2 000 2 7777 77
lowQualScore : .. . . ............................................................................... . ... . . . . . . . . . . . . . .. . .. . ............ . . . . . . . . . . . .................................................................................. .... . .. . . . . . . . . . ...... .. .. .. . ... .. . . .... . ....... . . . ... . ... ... . ............. . ... .. . . . ... . . . ..... ................................................... . .. . . . . . .. . .. .. .. . ................. . . . .................. . ... .... . ........ . .. .. . ... . . . . ... . . . . . ..... . . ......... . ... .. . . . . . .................. .. . . . . . . ... . .... ..
lowQualScore : 00 0 0 4444444444444444444444444444444444444444444444444444444444444444444444444444444 0 555 2 2 0 0 0 0 5 0 0 0 0 6 8 88 0 66 0 222222222222 0 0 4 0 8 0 0 0 0 8 4 8888888888888888888888888888888888888888888888888888888888888888888888888888888888 4444 0 00 0 3 0 0 0 7 0 2 4 888888 22 99 11 3 444 44 7 7 1111 7 0000000 0 0 0 000 2 555 222 5 2222222222222 8 888 66 0 0 8 222 5 0 0 88888 222222222222222222222222222222222222222222222222222 2 22 0 2 8 0 0 55 2 55 33 00 2 55555555555555555 0 2 0 000000000000000000 8 222 0000 0 00000000 8 00 00 0 888 0 0 7 7 333 0 0 7 0 7 00000 7 0 777777777 7 000 00 0 0 7 7 7 000000000000000000 00 0 0 0 0 0 5 000 5 5555 00
consensus : CCGTCACTAGTCGACTGCTCCTTTGAACAATCCGTCGCAGAGATCCCTTGTTAAAAGTAGAATTAAGC---------ATG--GC---T-TG-------------AAATG------------TTAAAATT--------CAGTTTAGTGAAGT-TTATACA---TATCCACTTATTCGGGGATCTTCGCCGATTATCCNTAGTCAGTCCGGATTAAATTGCCGTCATCTTGGAGCTATTTT-CCGTACATATTACTTTTTT-AATGC-ATTTTTTTATTGATAATTATTCTTT--TTATA-----ATGGTTCATACAATAAGCATAGCGCGGACTCAAAAA-GCAATTCAGATAAAAGATGGTTTTATATCCGTTCTAATACCAATGGTATCGTAACTTTCTTTTGTAGTGAANAAGATACAGTTGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNANNCCTATCATC-ACTTTCTCTTATCAAAACAGATTCTTCTTCTGGTATGTCCTCTTGTATCTCTGAAAGNTGACGGATATTTAAATTTCCGTTGATGACAAG-TTTTGAATAG-TCGAAT-ACCACAGC--A---GTGGTTTAGTGGTAGAGCGTCCGATT--CACATGCAGAAGGNGGAAAGTATGTAGAGTA-AAGA----AACTCTTTTTGAAA-------ATGA-TACTGATTAACACGTGCTAAAATAGTGTAGATGTTGTTGGAACGTTACTGAATTTTC--TTGAATTTGAAAGCAAAC-TTAAAG--GTTAGACTCTAATTTTACGTAC----AC----TGTATAATGGTTTAAGTATTGTTTGACCCAATTCCCTTACAATAGCTGTTGATTGTCAATC-AATCTTTCAGAATCAACTTAGTT----NAAAAC----AN-TCTT-AAA-AAG----TGAAT----ACTTTATGCCTGT-TAAGTTGGGTTGAATGCCACCACATATTCTCTGAAGCACGTTTGTTAACATTT-TTTTTAAATATGCAACATTTCCCTGACTGCCATAATTGTACCAAAATATAACCGATACGATTATTCAAGATTTTATTTT-CTTTCTTATCTA-A------TATTNTAATTTC-ATTAAAANTAAT-AA---CAAAA----T-ATGCATCCAATCGGCAT----TTTTGATC-GAT--------CAGAAATCACAGCCATCTAG--AA--CTAC-GCAAGTTCCCT-TGTCAAAATTGATTGGTTCACGCACTGCCTCTATTTAGTGGAGTTTCACTTAAANA---AAAATCAAAGTGNTCGATCAACTTAAATGGGT-GTTACGTCGAGACAATGCCTGTATCAAACATCTGTCTCACCTATGCACCTGTCGAAAATATATCTATGTGATGGAATCAAGATCTTAGAAATCGAGGA-CTGTTCGGTTGATGTTGATATTACTCGATAGAGCAGTTGNTCGCGCTNGATTCTCTTTCCGNAGNTCGTTGTTCA-TTCTCCA--------GCGGGAAAACATTTTTATGTCGCTTTATATTNATAGTAGTATTNAATTCAAACAAATCGAGCTAGGCATATNTATGATGATTTGACCTATGGCATTGTGTNGAAAGGTCTAGAATCAAAATATCATAAAGNGCAANNGCAGAACGNNACCGATTAGAAACTCGAG
Reference ( gi|1 ) : CCGTCACTAGTCGACTGCAACTTTGAATAATCCGTCGTAGAGATCCCTTGTTAAAAGTAGAATTAAGC---------ATG--GC--------------------AAATA------------T--ACATG--------CA--------AAGT-TTATACA---TATCCATTTATTCGGGGATTTTCGTCGATTATCCTTAGACAATCCGGATTGAATTGCCGTCATCTTGGAGCTATTTT-CGGTACATTTTACTTTTTT-AATAC-TTTTTTTTATTAACAATTATTCTTT--GTATT-----ATGGTTCATACAATAAGCACAGCGCGAACTCAAAAA-GCAAATCAGATAAAGGATGGTTTTATATCCGTTCTAATACCAATTGTATCGTAACTTTCTTTCGTAGCGAAAAAGATACAGTTGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATATCATC-CCCTTCTCTTATCAAACCAG--TCTTCTTCTGATATGTTCTCTTGTATCTCTGGAAGTTGATGAATATTCAAATTTCCGTTGATGACAAG-TTTTGAATAG-TCAAAT-ACCACAGC--A---GTGGTTTAGTGGTAGAGCATCCGACT--CACATGAAGAAGATAAAAAGTATGTAGAGTA-AAGA----AACTCCTTTTGAAA-------ATAA-TACTGATTAAAACGTGCTAAAATAGTGTAGATGTTGTTGGAACCTTACTGAATTTTC--TTGAATTTGAAAGCAAAC-TAAAAAATGTTAAACTCTAATTTTACGAAC----AC----TGTATAATGGTTTAACAATTGTTTGATCTAATTCCCTTATTTTAGCTGTTGATTGTCAATC-AATCTTTCAGAACCAACTTAGTT----CAAAA-----AC-TCTT-AAA-AG-----TGAAT----ACCTTATGCTTGT-TATGTTGGGTTGAATGTCATCACATATTCTCTGAAGCACGGTTGTAAACATTT-TTTTAAAATATGCAACATTTTCCTGACTGCCATAATTGTACCAAAATATAACCGATACGGTTATTCAAGATTTTATTTTATTTTTTTATCTA-A------TATTGTATTTTC-ATTAAAATTAAT-AA---CAAAA----TTTTTTATCCAATCGGCAT----TTTTGATC-GAT--------CAGAAAACACAGCCATCTAG--AA--CTAC-GCAAGTTCCCT-TTTCAAAGTTGATTGGCTCACGCACTGCCTCTATTTACTGGAGTTTCACTTAAAGA---AAAACCAAAATGTTCGATCAGCTTAAATGGGTAGTT-CATCCAGACAATGCCTGTATCAAACATCTGTCCCACCTATGCAC---------ATATATCTATGTGATGGAATCAAGATCTTAGAAATCGAGGGGCTGTTCGGTTGATGTAAATATTACTCGAAAGAGCAGTTGTTCGCGCTTGATTCTCTTTCCGAAGGTCGTTGTT--------CA--------GCGGGAAAACATTTTTATGTCGCTTTATATCTATAATAGTATTAAATTCAAATAAATCGAGTTAGGCATATTTATGATGATTTGACCTATGACATTGTGTGGAAAGGTCTAGAATTAAAATATC---AAGCGCAGGACCAGAACAATACCGATTAGAAACTCGAG
gi|10 : CCGTCACTAGTCGACTGCTCCTTTGAACAATCCGTC
gi|9 : nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnCCGTCACTAGTCGACTGCTCCTTTGAACAATCCGTC
gi|11 : nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnCCGTCACTAGTCGACTGCTCCTTTGAACAATCC
gi|6 : nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnCGTCACTAGTCGACTCCTCCTTTGAACAACCCGTCGCAGAGATCCCTTGTTAAAAGTAGAATGAAGC---------ATG--GCAAATATGAATCCTCTTTATTAAATG------------TTAATATT--------CAGTTTAGTGAAGT-TTATACA---TATCCACTTATTCGGAGATCTTCGCCGATTATCCTTAGTCAGTCCGGATTAAATTGCCGTCATCTTGAAGCTATTTT-CCGTACCTATTAC-TTTTT-AATAC-CTTTTTTTATTGATAATTATACTTT--TTATA-----ATGGTTCATACAATAAGCATAGCGCGGACTCAAAAATGCAATTCAGATAAAAGATGGTTTTATATCCGTTCTAATACCAATGGTATCGTGACTTTCTTTTGTAGTG---AAGATACAGTTGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTATCATC-ACTTTCTCTTATTAAAACAGATTCTTCTTCTGGTATGTCCTTCTGTATCTCTGAAAGATGATGGATATTTAAATTTCCGTTGATGACCAGTTTTTGAATAG-TCGAAT-ACCACAGC--A---GTTGTTTACTGGTAAAGTATCCGATT--CACATGCAGAAGG-AGAAAGTATGTAGAGTA-AAGA----AACTCTTTTT
gi|18 : CGTCACTAGTCGACTGCTCCTTTGAACAATCCGT
gi|4 : CCGTCACAGAGATTCCTTGTTAAAAGTAGAATTAAGC---------ATG--GT--------------------AAATATCGAGTTTTTATT--AGATGTTAATATTCAGTTTATTGAAGT-TTATACA---TATCCACTTATTCGGGGATCTTCACCATTTATATTTAATCAGTCCGGATTAAATTGCAGTCATCTTGGAGCTTTTTT-CGATACATTTTACTTTTTTTAATGC-ATTCTTTTATTAATAATCATTCTTTTAATATTTTATAATGGTTCATGCAATAAGTATAGCTCGGACTCATAAA-GAAATTCAGTTAAAAGATGATTTTATATCTGTTCTAATAGCAATGGTATCGTAACTTTCTTTTGTAATGAAGAAGATACAATTGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACAC-TATCATCACTTTTCTCTTATCAAAATAGGTTCTTCTTCTGGTATGTACTCTTGTATCTCTGAAAGTTGACAAATATTTATATTTCCGTTGATGACAAG-TTTTGAATAG-TCGAAT-ACCACAAC--A---GTGGTATAGTGGTAGAGCAAACGGCT--AACATGTACAAGGAGAAACATATGTAGAGTA-AAGACAGAAACTCTTTTTGAAA-------ATGA-TACTGATTAACACGTGCTAAAGTAGTGTAGATGTTGTGAGAACGTTCCTGAATTTTC--TTGAATTTGAAAGCAAAC-TTAAAG--GTTAGATTCTAATTTTACG---------------TA-AAT---------ATTGTTTGACCCAATTCCAT-ACAATAGCTGTTGATTGTCCATT-AATCTTTCAGAATCAACTTAGTT----CAAAAC----AT-CTTT-AAA-AA-----TGAAT----ACTTTATGACTGC-TAAGTTAGATTGAATGCCACCACATATTCTCTGAAGCACGTTTGTTAACCTTT-TTTTTAAATATGCAACATTTCTCTGACTGCCATAATTGTAACAAAATATAACCGATACAGTTATTCAAGATTTTATTTT-CTTTCCTATCTA-A------TATTGTTATTTC-ATTAAAATTAAT-AAAAACAAAAACAATAATGCATCCAATCGGCAT----TTTTGATC-GAT--------CATAAATCACCGCCATCCAG--AA--CAAC-GCAAGTTCCCT-TGTCAAAATTGATTGGTTCACGCACTGCCTCTAT
gi|5 : ggTAAAAGTAGAATTAAGCATGGCAAATATGAAGCCTCTTTATT-----------AAATG------------TTAAAATT--------CAGTTTAGTGAAGT-TTAAACA---TATCCACTTATTCGGGGATCTTCGCCGATTATCCATAGTCAGTCCGGATTAAATTGCCGTCATCTTGGAGCTATTTT-CCGTACATATTACTTTTTT-AATGC-ATTTTTTTATTGATAATTATTCTTT--TTATA-----ATGGTTCATACAATAAGCATAGCGCGGACTCAAAAA-GCAATTCAGATAGAAGATGGTTTTATATCCGTTCTAATACCAATGGTATCGTAACTTTCTTTTGTAGTCAACAAGATACAGTTGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACTCTATCATC-ACTTTCTCATATCAAAACAGATTCTTCTTCTGGTATGTCCTCTTGTATCTCTGAAAGATGATGGATATTTAAATTTCCGTTGATGACAAG-TTTTGAATAG-TCGNNN-NNNNNNNN--N---NNNNNNNNNNNNNNNNNNNNNNNNNN--NNNNNNNNNNNNNNGAAAA-TATGTAGAGTA-AAGA----AACTCTTTTTGAAA-------ATGA-TACTGATTAACACGTGCTGAAATAGTGAAGATGTTGTTGGAACGTTATTGAATTTTC---CG---TTGAAAGCAAACGTAAAG---GTTAAACT-TATTTTTTCGTACAATTAT----TGTATAATGGTTTAAGTATTGTATGACCCAATTCCCTTA
gi|3 : gaATA------------T--AAATT--------TA--------AAGTATTATTTAATTTACGCATC-AGTCGGGGATCTTCGCCGATTATCCATAGTCA-----GATTAAATTGCCGTCATCTTGGAGCTATTTT-CCGTACATATTACTTTTTT-AATGC-ATTTTTTTATTGATAATTAATCTTT--TCATA-----ATGGTTGATACAATAAGCATAGCGCGGACTCAAAAA-ACAATTCAGATAAAAGATGGTTTTATATCCGTTCTAACACCAATGGTATCGTAACTTTCTTTTGTAGTGAAGAAGATACAGTTGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-NNNNNCTCTTATCAAAACAGATTCTTCTTCTGGTATGTCCTCTTGTATCTCTGAAAGATGATGGATATTTAAATTTCCGTTGATGACAAG-TTTTGAATAG-TCGAAT-ACCACAGC--A---GTGGTTTAGTGGTAGAGTATCCGATT--CACATTCAGAAGG-AGAAAGTATGTAGAGTA-AAGA----AACTCTTTTTGAAA-------ATGA-TACTGATTAACACGCGCTAAAATAGTGTAGATGTTGTTGGAACGTTATTGAATTTTCCGTTGAATTTGAAAGCAAAC-TTAAAG--GTTAAACTCTAATTTTACGTAC----ACTTATTGTATAATGGTTTAAGTATTGTTTGACCTAATTCCCTTACAATAGCTGTTGATTGTTAATC-AATCTTTCAGAATCAACTTAGTT----AAAAA-----AA-TGTTAAAA-AA-----TGAA----------------------GTTAGCTTGAATGCCACCAC--ATTCTCTGAAGCTCGTTTGTTAACATTT-TTTTTAAATATGCAACAGTTCCCTGACTGCCATAATTGTACCAAAATATAACCGATACTATTATTCAAGATTTTATTTT-CTTTTTTATCTA-AAAAAGTTATTTCATAGTA-ATTAATAAAAAT-AA---CAAAA------ATGCATCCAATCGGCAT----TTTTGATC-GAT--------CAGAAATCACAGCCATCTGG--AA--CTAC-GCAAGTTCCCCATGTCAAAATTGATTGGTTCACGCACTCTCTCTATTTAGTGGAGTTTCACTTAAAGA---AAAATCAAAGTGCTCGATCAACTTAAATGGGT-GTTAGGTCCAGAAAATGCCTGTATCAAACATCGGTCTCcaaaagc
gi|2 : aaagtagaaatgaagattaaaggtaatggaacatgtttagactaattatacttatgttaaaggtatcGCAGTTATCTTAAAGCTATTTTTCGGTTCTTTTTACTTTTT--AATGCATTTTTTTTATTAATAAGTATTCTTT--TTAAA-----ATGGTACATACAATAATCATAACTCGGACTCGTCAA-GCAAATCAGATTAAAGATGGTTTTATATCCGTTATAATACCAATGGTATCGTAACTTTCTTTTGTAGTGAACAAGATACAGTTGA
gi|2 : aaaTAACATC-ACGTTCTCTTATCAAAACAGATTCTTCTTTTGGTATGTCCTGTTGTATCTCTGAAAGTTGGCGAATATTTAAATTTCCGTTGATGACAAG-TTTTAAATAG-TCGAAT-ACCACAGC--A---GTGGCTTAGTG-TAGATCATC----------ATGCAAAA-ATAAAC-GTACGTACATTA-AAGA----AATTCTTTTTAAAA-------AAAAATACTAATTAACACGTGCTAAAATTGTGTAGACGTTGTTGGAACGTTACTGCATTGTC--TTGAATTTGAAAGCAAAC-TTATAG--GTTAGACTCTAATTTTAGG--T----AC----TGTATAATG-TTTAAGTATTATTTGACCCAATTCCCTTACAATAGCTATTGATTGTCAATT-AAGCTTTCAGAATCAACTTAGTT----AAAAA-----A--TCTT-AAA-AAA----TGGAT----ACTTTATGCCTGT-TAAGTTGGGTTGAATTCCACCACATATTCTCTGAAGCACGATTATTAACAATT-TTTTTGAATATGCAACATTTCACTGACTGCCATAAGTGTACCAAAATATAACATATACGATTATTCAAGATTTTATTTT-CTTTCTAATCTATA------TATTTTAATTTC-ATTAAAATTAATAAA---AAAAA----TCATTAATGCAATCGGCTT----TTCTGATC-AAT--------CAGAAATCAAAGCCATCTAG--AA--CTAT-CCAAGTTCCCT-TGTCAAAATTGATTGGTTCACGCACTGTCTCTATTAAGTGGAGTTTCACTTAAATA---ATTATCAAAGTGATCGATCCACTTAAAT-GGTCGTTACATCAAGACAATGCCTGTATCAAACATCTGTTTCACCTATGCATCTGTTGAAAATATATCTATGTGATGTAATCAAGATCTTAGAAATGGAAGAA-TGTTCGATTGATGTTGATATAACTCGATAAAGCAGATGGCAGCGCTGGATTCTCTTTCCAGAGATCGTTGTTCAATTCTCCA--------GCGGGAAAACATTTTTTTGTCGCTTTATATTAATAGTAATATTTAATTCAAACAAATCGAGCTAGGCATATTTATGATGATTTGACCTATGGCATTGTGTCGAAAGGTCTAGAATCAAAATATCATAAAGCGCAATTGCAGAACAATACTGATTAGAAACTCGAGgggtttctattcaggcggtccttattcgaatccctgtgaaagttttttattgttcatctttcaagtaacatcacgttctcttatcaaaacagattcttcttttggtatgtcctgttgtatctctgaaagttggcgaatatttaaatttccgttgatgacaagttttaaatagtcgaataccacagcagtggcttagtgtagatcatcatgcaaaaataaacgtacgtacattaaagaaattctttttaaaaaaaaatactaattaacacgtgctaaaattgtgtagacgttgttggaacgttactgcattgtcttgaatttgaaagcaaacttataggttagactctaattttaggtactgtataatgtttaagtattatttgacccaattcccttacaatagctattgattgtcaattaagctttcagaatcaacttagttaaaaaatcttaaaaaatggatactttatgcctgttaagttgggttgaattccaccacatattctctgaagcacgattattaacaatttttttgaatatgcaacatttcactgactgccataagtgtaccaaaatataacatatacgattattcaagattttattttctttctaatctatatattttaatttcattaaaattaataaaaaaaatcattaatgcaatcggcttttctgatcaatcagaaatcaaagccatctagaactatccaagttcccttgtcaaaattgattggttcacgcactgtctctattaagtggagtttcacttaaataattatcaaagtgatcgatccacttaaatggtcgttacatcaagacaatgcctgtatcaaacatctgtttcacctatgcatctgttgaaaatatatctatgtgatgtaatcaagatcttagaaatggaagaatgttcgattgatgttgatataactcgataaagcagatggcagcgctggattctctttccagagatcgttgttcaattctccagcgggaaaacatttttttgtcgctttatattaatagtaatatttaattcaaacaaatcgagctaggcatatttatgatgatttgacctatggcattgtgtcgaaaggtctagaatcaaaatatcataaagcgcaattgcagaacaatactgattagaaactcgagaacacgttcaacttaacgactctcaatat
gi|12 : aaagcagttatcttaaagctatttttcggttctttttactttttaatgcattttttttattaataagtattctttttaaaatggtacatacaataatcataactcggactcgtcaagcaaatcagattaaagatggttttatatccgttataataccaatggtatcgtaactttcttttgtagtgaacaagatacagttgagggtttctattcaggcggtccttattcgaatccctgtgaaagttttttattgttcatctttcaagTCTCTTCACAAAACATATTCTTCTTCTGGTATGTGCGCTTATATCTCTGAAAGTTGACGAAGATTTAAATTTCCGTTGATGACAAG-TTTTGAATAG-TCGATT-TCTACNNN--N---NNNNNNNNNNNNNNNNNNNNNNNNNN--NNNNNNNNNNNNNAGAGACGTATGTACAGC----------AACT-TTTTTGAAAGGAGCAGATAATTACTGAaacacgttcaacttaacgactctcaatat
gi|15 : aATGTCTATTGATG--------TTGAATGGATTAAAT-ACCTCACCTGACCTGTGGATTAGTGGTAGAGTGTCCGCTT--CACAT
gi|14 : atTTTGA-TAG-CTAAATCACCGCAGC--G---GTAGTCTAGGGGAAGAGCGTCCGACTCGCACATCAAATACCTGGAAA--ATGT----TACGGGA----AACTCCCT
gi|17 : ag-ACCACAGC--A---GTGGTTTAGTGGTAGAGCATCTG
gi|8 : agC----TGTATAA-GGTTTAAGTCTTATTTGATTCCATTTTCTTTCCATAGCTAATCAGT-TTAACCTAATCTTTTAGAACCAGCTTAGTTACAACAAAACACAAACATCGT-AAATAGGTAACTCAATTGGAGCTTTATGCTTGTATAT-TTGGGTTGGATACCACCACCTATTTTCTGAAACACTTTTGTTAACATTTATTTT--ATTATGCAACA-TTTCCTGACTGCCATTATTcc
gi|8 : TATTTTTTTAAC-A-A------T-TTA----TTCGAATAAAAATGAT-AA---TAA---------TGCATCAACTCA--------TTTTAACC-AAT--------CAGGAATCATAGCCATCTAACTAATGCTACGGTATGTGCCCT-GGTCAAAATTGAcaagtatttttttaacaatttattcgaataaaaatgataataatgcatcaactcattttaaccaatcaggaatcatagccatctaactaatgctacggtatgtgccctggtcaaaattga
gi|7 : ctgtataaggtttaagtcttatttgattccattttctttccatagctaatcagtttaacctaatcttttagaaccagcttagttacaacaaaacacaaacatcgtaaataggtaactcaattggagctttatgcttgtatatttgggttggataccaccacctattttctgaaacacttttgttaacatttattttattatgcaacatttcctgactgccattattcaagTGAAAGTAAT-AA---CA---------TTTGA---AATCGAAATAGAATTTTGACCTGGTTGCCCTTCCATAGAAATCAGCCATCTAG--AA--ATAC-GCAAGTTCCCC-TGTCAAAATTGATTGGTTCACGCACTGCCTCTATTTACAGGAGTTTCACTTAAAAAGAAAAAAACAAAGTGTTCGATCAACTTAAATGGGTATTA-CATCGAGACAGTGCCTGTATCAAACATCTATCTCACCTATGCACCTGTCAAAAATATATCTTTGTGATGGAATCAAGATCTTAGAAATCGAGGA-CTGTTTGGTTGATGTTGATATTACTCGATAGCGCAGTTACTCGCGCTAGATTCCCTTACCGTAGTTCGTTGTT--------CAATTCTCCAGCGGGAAAACATTTTAATGTCGCTTTATATTTATAGTAGTATTAAATTCAAACAAATCGAGCTAGGCATATGTATGATGATTTGACCTATGACATTGTGTGGAAAGGTCTAGAATTAAAATATCATAAAGAGCAAGAGCAGAACGCAACCGATTAGAAACTCGAG
gi|13 : ---------ATATATCTATGTGAGGGAAT--------------TCGAGGG-CTGTTCGGGTGATGTTGATATTGATCGATAGAGCAGTTGTTCGTGCTTGATTCTCTTTCCGAAGGTCGTTGTTCATTTCTCCA--------GCGTGAAAACAGTTTTATGTTGCTTTaacacgttcaacttaacgaatcttattat
1 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|16 ): TAAAATATCATAAAGAGCAAGAGCAGAGCAGTGCTGAACACGTTCAATTTAACAGACCCTCATTAT
Alignments
lowQualScore : 22222222222222222222222222222222
lowQualScore : 00000000000000000000000000000000 2222222 11 111 2222222 9999999999999999999999999999999999999999999999999999999999999999999999999999999999 11111 1111 111 11 222222222222 11111 222222222 22222 1 1111 333333 111 44444444444 1111 111111 111 1 111111 1 2222
lowQualScore : 66666666666666666666666666666666 0 9999999 8 3 00 8 0 444 1 0 6 4 6 6 1111111 6 3 0000000000000000000000000000000000000000000000000000000000000000000000000000000000 0 0 5 1 0 1 5 4 4 55 777 2 11 66 4 2 5 11111 0 5 0000 5 111 0 11 999999999999 55 8 88888 777777777 0 00000 1 3 7777 1 1 5 1 3 3 0 8 22 1 8 1 1 77 111111 1 111 88888888888 1 6 4444 999999 5 99 99 6 6 2 1 777 1 1 0 3 2 6 000000 2 0 1 1 1 1 9999 1 1 1 0 1 0 3 1 22 444
lowQualScore : ................................ . ....... . . .. . . ... . . . . . . ....... . . .................................................................................. . . . . . . . . . .. ... . .. .. . . . ..... . . .... . ... . .. ............ .. . ..... ......... . ..... . . .... . . . . . . . . .. . . . . .. ...... . ... ........... . . .... ...... . .. .. . . . . ... . . . . . . ...... . . . . . . .... . . . . . . . . .. ...
lowQualScore : 55555555555555555555555555555555 8 2222222 0 2 66 0 8 000 0 8 7 0 7 7 7777777 7 3 0000000000000000000000000000000000000000000000000000000000000000000000000000000000 8 7 7 4 1 0 0 4 0 55 000 7 11 11 4 1 0 11111 2 0 6666 7 888 8 00 666666666666 77 0 00000 888888888 8 00000 4 8 0000 4 0 6 0 8 2 2 0 22 0 0 4 0 44 000000 0 777 22222222222 0 7 2222 222222 2 22 22 7 7 5 0 555 2 0 0 2 0 5 333333 5 0 0 0 0 0 5555 0 0 0 7 0 7 2 0 00 000
consensus : CCGTCACTAGTCGACTGCTCCTTTGAACAATCCGTCGCAGAGATCCCTTGTTAAAAGTAGAATTAAGCATGGCAAATATGAA-CCTCTTTATTAA----------ATGTTAAN------AT-TCAGTTTAGTGAAGT-TTATACATATCCACTTAT---TCGGGGATCTTCGCCGATTATCCTTAGTCAGTCCGGATTAAATTGCCGTCATCTTGGAGCTATTTTCCG-TACATNTTACTTTTTT-AATGCATTTTTTT-ATTGATAATTATTCTTTT-------TATAATGGTTCATACAATAAGCATAGCGCGGACTCAAAAA-GCAATTCAGATAAAAGATGGTTTTATATCCGTTCTAATACCAATGGTATCGTAACTTTCTTTTGTAGTGAANAAGATACAGTTGAGGGTTTCTATTCAGGCGGTCCTTATTCGAATCCCTGTGAAAGTTTTTTATTGTTCATCTTTCAAGTAACATCACGTTACNCCTATCATCACTTT-CTCTTATCAAAACAGATTCTTCTTCTGGTATGTCCTCTTGTATCTCTGAAAGNTGACGGATATTTAAATTTCCGTTGATGACAAG-TTTTGAATAG-TCGAAT-ACCACAGC--A---GTGGTTTAGTGGTAGAGCGTCCGACT--CA-CATGCAGA-AGGAGGAAAGTATGTAGAGTA-AAGA----AACTCTTTTT-GAAAATGATACTGATTAACACGTGCTAAAATAGTGTAGATGTTGTTGGAACGTTACTGAATTTTC--TTGAATTTGAAAGCAAACTTAAAG--GTTAAACTCTAATTTTACGTAC----AC----TGTATAATGGTTTAAGTATTGTTTGACCCAATTCCCTTACAATAGCTGTTGATTGTCAATC-AATCTTTCAGAATCAACTTAGTTA----AAAACAN-----TCTTAAA-----AAATGAAT----ACTTTATGCCTGTTAAGTTGGGTTGAATGCCACCACATATTCTCTGAAGCACGTTTGTTAACATTTTTTTTAAATATGCAACATTTCCCTGACTGCCATAATTGTACCAAAATATAACCGATACGGTTATTCAAGATTTTATTTT-CTTTCTTATCTA-ATATTGTAATTTC------ATTAAAANTAAT---AACAA----AA--T-ATGCA-TCCAATCGGCATTTT----TGATCGATC------AGAAATCACAGCCATCTAG--AA--CTAC-GCAAGTTCCCT-TGTCAAAATTGATTGGTTCACGCACTGCCTCTATTTANTGGAGTTTCACTTAAAGA---AAAATCAAAGTGTTCGATCAACTTAAATGGGT-GTTACATCNAGACAATGCCTGTATCAAACATCTGTCTCACCTATGCACCTGTCGAAAATATATCTATGTGATGGAATCAAGATCTTAGAAATCGA-GGGCTGTTCGGTTGATGTTGATATTACTCGATAGAGCAGTTGTTCGCGCTNGATTCTCTTTCCGAAGGTCGTTGTTCAA-TTCTCCAGCGGGAAAACATTTTTATGTCGCTTTATATTTATAGTAGTATTAAATTCAAACAAATCGAGCTAGGCATATTTATGATGATTTGACCTATGACATTGTGTGGAAAGGTCTAGAATTAAAATATCATAAAGNGCAAGAGCAGAACAATACCGATTAGAAACTCGAG
Reference ( family-2801 ) : CCGTCACTAGTCGACTGCTCCTTTGAACAATCCGTCGCAGAGATCCCTTGTTAAAAGTAGAATTAAGCATGGC---------------TTG--AA----------ATGTTAAA------AT-TCAGTTTAGTGAAGT-TTATACATATCCACTTAT---TCGGGGATCTTCGCCGATTATCCNTAGTCAGTCCGGATTAAATTGCCGTCATCTTGGAGCTATTTTCCG-TACATATTACTTTTTT-AATGCATTTTTTT-ATTGATAATTATTCTTTT-------TATAATGGTTCATACAATAAGCATAGCGCGGACTCAAAAA-GCAATTCAGATAAAAGATGGTTTTATATCCGTTCTAATACCAATGGTATCGTAACTTTCTTTTGTAGTGAANAAGATACAGTTGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNANNCCTATCATCACTTT-CTCTTATCAAAACAGATTCTTCTTCTGGTATGTCCTCTTGTATCTCTGAAAGNTGACGGATATTTAAATTTCCGTTGATGACAAG-TTTTGAATAG-TCGAAT-ACCACAGC--A---GTGGTTTAGTGGTAGAGCGTCCGATT--CA-CATGCAGA-AGGNGGAAAGTATGTAGAGTA-AAGA----AACTCTTTTT-GAAAATGATACTGATTAACACGTGCTAAAATAGTGTAGATGTTGTTGGAACGTTACTGAATTTTC--TTGAATTTGAAAGCAAACTTAAAG--GTTAGACTCTAATTTTACGTAC----AC----TGTATAATGGTTTAAGTATTGTTTGACCCAATTCCCTTACAATAGCTGTTGATTGTCAATC-AATCTTTCAGAATCAACTTAGTTN----AAAACAN-----TCTTAAA-----AAGTGAAT----ACTTTATGCCTGTTAAGTTGGGTTGAATGCCACCACATATTCTCTGAAGCACGTTTGTTAACATTTTTTTTAAATATGCAACATTTCCCTGACTGCCATAATTGTACCAAAATATAACCGATACGATTATTCAAGATTTTATTTT-CTTTCTTATCTA-ATATTNTAATTTC------ATTAAAANTAAT---AACAA----AA--T-ATGCA-TCCAATCGGCATTTT----TGATCGATC------AGAAATCACAGCCATCTAG--AA--CTAC-GCAAGTTCCCT-TGTCAAAATTGATTGGTTCACGCACTGCCTCTATTTAGTGGAGTTTCACTTAAANA---AAAATCAAAGTGNTCGATCAACTTAAATGGGT-GTTACGTCGAGACAATGCCTGTATCAAACATCTGTCTCACCTATGCACCTGTCGAAAATATATCTATGTGATGGAATCAAGATCTTAGAAATCGA-GGACTGTTCGGTTGATGTTGATATTACTCGATAGAGCAGTTGNTCGCGCTNGATTCTCTTTCCGNAGNTCGTTGTTC-A-TTCTCCAGCGGGAAAACATTTTTATGTCGCTTTATATTNATAGTAGTATTNAATTCAAACAAATCGAGCTAGGCATATNTATGATGATTTGACCTATGGCATTGTGTNGAAAGGTCTAGAATCAAAATATCATAAAGNGCAANNGCAGAACGNNACCGATTAGAAACTCGAG
gi|1 : CCGTCACTAGTCGACTGCAACTTTGAATAATCCGTCGTAGAGATCCCTTGTTAAAAGTAGAATTAAGCATGGC--------------------AA----------ATAT--AC------AT-GCA--------AAGT-TTATACATATCCATTTAT---TCGGGGATTTTCGTCGATTATCCTTAGACAATCCGGATTGAATTGCCGTCATCTTGGAGCTATTTTCGG-TACATTTTACTTTTTT-AATACTTTTTTTT-ATTAACAATTATTCTTTG-------TATTATGGTTCATACAATAAGCACAGCGCGAACTCAAAAA-GCAAATCAGATAAAGGATGGTTTTATATCCGTTCTAATACCAATTGTATCGTAACTTTCTTTCGTAGCGAAAAAGATACAGTTGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATATCATCCCCTT-CTCTTATCAAACCAG--TCTTCTTCTGATATGTTCTCTTGTATCTCTGGAAGTTGATGAATATTCAAATTTCCGTTGATGACAAG-TTTTGAATAG-TCAAAT-ACCACAGC--A---GTGGTTTAGTGGTAGAGCATCCGACT--CA-CATGAAGA-AGATAAAAAGTATGTAGAGTA-AAGA----AACTCCTTTT-GAAAATAATACTGATTAAAACGTGCTAAAATAGTGTAGATGTTGTTGGAACCTTACTGAATTTTC--TTGAATTTGAAAGCAAACTAAAAAATGTTAAACTCTAATTTTACGAAC----AC----TGTATAATGGTTTAACAATTGTTTGATCTAATTCCCTTATTTTAGCTGTTGATTGTCAATC-AATCTTTCAGAACCAACTTAGTTC----AAAA-AC-----TCTT-AA-----AAGTGAAT----ACCTTATGCTTGTTATGTTGGGTTGAATGTCATCACATATTCTCTGAAGCACGGTTGTAAACATTTTTTTAAAATATGCAACATTTTCCTGACTGCCATAATTGTACCAAAATATAACCGATACGGTTATTCAAGATTTTATTTTATTTTTTTATCTA-ATATTGTATTTTC------ATTAAAATTAAT---AACAA----AAT-T-TTTTA-TCCAATCGGCATTTT----TGATCGATC------AGAAAACACAGCCATCTAG--AA--CTAC-GCAAGTTCCCT-TTTCAAAGTTGATTGGCTCACGCACTGCCTCTATTTACTGGAGTTTCACTTAAAGA---AAAACCAAAATGTTCGATCAGCTTAAATGGGTAGTT-CATCCAGACAATGCCTGTATCAAACATCTGTCCCACCTATGCAC---------ATATATCTATGTGATGGAATCAAGATCTTAGAAATCGAGGGGCTGTTCGGTTGATGTAAATATTACTCGAAAGAGCAGTTGTTCGCGCTTGATTCTCTTTCCGAAGGTCGTTGTT---------CAGCGGGAAAACATTTTTATGTCGCTTTATATCTATAATAGTATTAAATTCAAATAAATCGAGTTAGGCATATTTATGATGATTTGACCTATGACATTGTGTGGAAAGGTCTAGAATTAAAATATC---AAGCGCAGGACCAGAACAATACCGATTAGAAACTCGAG
gi|10 : CCGTCACTAGTCGACTGCTCCTTTGAACAATCCGTC
gi|11 : nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnCCGTCACTAGTCGACTGCTCCTTTGAACAATCC
gi|12 : nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnT-CTCTTCACAAAACATATTCTTCTTCTGGTATGTGCGCTTATATCTCTGAAAGTTGACGAAGATTTAAATTTCCGTTGATGACAAG-TTTTGAATAG-TCGATT-TCTACNNN--N---NNNNNNNNNNNNNNNNNNNNNNNNNN--NN-NNNNNNNN-NNNAGAGACGTATGTACAGC----------AACT-TTTTT-GAAA
gi|13 : aAAAATATATCTATGTGAGGGAAT--------------TCGA-GGGCTGTTCGGGTGATGTTGATATTGATCGATAGAGCAGTTGTTCGTGCTTGATTCTCTTTCCGAAGGTCGTTGTTC-ATTTCTCCAGCGTGAAAACAGTTTTATGTTGCTTTggagcagataattactga
gi|14 : ttTTTGA-TAG-CTAAATCACCGCAGC--G---GTAGTCTAGGGGAAGAGCGTCCGACTCGCA-CAT-CAAATACCTGGAAA--ATGT----TACGGGA----AACTC
gi|15 : agATGTCTATTGATG--------TTGAATGGATTAAAT-ACCTCACCTGACCTGTGGATTAGTGGTAGAGTGTCCGCTT--CA-CATcct
gi|16 : atAAAATATCATAAAGAGCAAGAGCAGAGCAGTGCTGA
gi|17 : t-ACCACAGC--A---GTGGTTTAGTGGTAGAGCATCTGacacgttcaatttaacagaccctcattat
gi|18 : agCGTCACTAGTCGACTGCTCCTTTGAACAATCCGTcc
gi|2 : GCAGTTATCTTAAAGCTATTTTTCGGTTCTTTTTACTTTTT--AATGCATTTTTTTTATTAATAAGTATTCTTTT-------TAAAATGGTACATACAATAATCATAACTCGGACTCGTCAA-GCAAATCAGATTAAAGATGGTTTTATATCCGTTATAATACCAATGGTATCGTAACTTTCTTTTGTAGTGAACAAGATACAGTTGAGGGTTTCTATTCAGGCGGTCCTTATTCGAATCCCTGTGAAAGTTTTTTATTGTTCATCTTTCAAGTAACATCACGTT-CTCTTATCA----------------AAA-CAGATTCTTCTTTTGGTATGTCCTGTTGTATCTCTGAAAGTTGGCGAATATTTAAATTTCCGTTGATGACAAG-TTTTAAATAG-TCGAAT-ACCACAGC--A---GTGGCTTAGT-GTAGA---------T--CATCATGCAAA-A--ATAAACGTACGTACATTA-AAGA----AATTCTTTTTAAAAAAAAATACTAATTAACACGTGCTAAAATTGTGTAGACGTTGTTGGAACGTTACTGCATTGTC--TTGAATTTGAAAGCAAACTTATAG--GTTAGACTCTAATTTTAGGT------AC----TGTATAAT-GTTTAAGTATTATTTGACCCAATTCCCTTACAATAGCTATTGATTGTCAATT-AAGCTTTCAGAATCAACTTAGTTA----AAA--AA-----TCTTAAA-----AAATGGAT----ACTTTATGCCTGTTAAGTTGGGTTGAATTCCACCACATATTCTCTGAAGCACGATTATTAACAATTTTTTTGAATATGCAACATTTCACTGACTGCCATAAGTGTACCAAAATATAACATATACGATTATTCAAGATTTTATTTT-CTTTCTAATCTATATATTTTAATTTC------ATTAAAATTAAT---AAAAA----AAATC-ATTAA-TGCAATCGGCTTTTC----TGATCAATC------AGAAATCAAAGCCATCTAG--AA--CTAT-CCAAGTTCCCT-TGTCAAAATTGATTGGTTCACGCACTGTCTCTATTAAGTGGAGTTTCACTTAAATA---ATTATCAAAGTGATCGATCCACTTAAATGGTC-GTTACATCAAGACAATGCCTGTATCAAACATCTGTTTCACCTATGCATCTGTTGAAAATATATCTATGTGATGTAATCAAGATCTTAGAAATGGA-AGAATGTTCGATTGATGTTGATATAACTCGATAAAGCAGATGGCAGCGCTGGATTCTCTTTCCAGAGATCGTTGTTCAA-TTCTCCAGCGGGAAAACATTTTTTTGTCGCTTTATATTAATAGTAATATTTAATTCAAACAAATCGAGCTAGGCATATTTATGATGATTTGACCTATGGCATTGTGTCGAAAGGTCTAGAATCAAAATATCATAAAGCGCAATTGCAGAACAATACTGATTAGAAACTCGAG
gi|3 : aaa----------ATGTTAAAGGTATCATATAAATTTA---AAGTATTATTTA-ATTTACGCATCAGTCGGGGATCTTCGCCGATTATCCATAGTCAG-----ATTAAATTGCCGTCATCTTGGAGCTATTTTCCG-TACATATTACTTTTTT-AATGCATTTTTTT-ATTGATAATTAATCTTTT-------CATAATGGTTGATACAATAAGCATAGCGCGGACTCAAAAA-ACAATTCAGATAAAAGATGGTTTTATATCCGTTCTAACACCAATGGTATCGTAACTTTCTTTTGTAGTGAAGAAGATACAGTTGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-CTCTTATCAAAACAGATTCTTCTTCTGGTATGTCCTCTTGTATCTCTGAAAGATGATGGATATTTAAATTTCCGTTGATGACAAG-TTTTGAATAG-TCGAAT-ACCACAGC--A---GTGGTTTAGTGGTAGAGTATCCGATT--CA-CATTCAGA-AGGAG-AAAGTATGTAGAGTA-AAGA----AACTCTTTTT-GAAAATGATACTGATTAACACGCGCTAAAATAGTGTAGATGTTGTTGGAACGTTATTGAATTTTCCGTTGAATTTGAAAGCAAACTTAAAG--GTTAAACTCTAATTTTACGTAC----ACTTATTGTATAATGGTTTAAGTATTGTTTGACCTAATTCCCTTACAATAGCTGTTGATTGTTAATC-AATCTTTCAGAATCAACTTAGTTA----AAAA-AA-----TGTTAAA-----AAATG---------------------AAGTTAGCTTGAATGCCACCAC--ATTCTCTGAAGCTCGTTTGTTAACATTTTTTTTAAATATGCAACAGTTCCCTGACTGCCATAATTGTACCAAAATATAACCGATACTATTATTCAAGATTTTATTTT-CTTTTTTATCTA-AAAAAGTTATTTCATAGTAATTAATAAAAAT---AACAA----AA----ATGCA-TCCAATCGGCATTTT----TGATCGATC------AGAAATCACAGCCATCTGG--AA--CTAC-GCAAGTTCCCCATGTCAAAATTGATTGGTTCACGCACTCTCTCTATTTAGTGGAGTTTCACTTAAAGA---AAAATCAAAGTGCTCGATCAACTTAAATGGGT-GTTAGGTCCAGAAAATGCCTGTATCAAACATCGGTCTCaacacgttcaacttaacgactctcaatat
gi|4 : aaagtagaaatgaagattaaaggtaatggaacatgtttagactaattatacttCCGTCACAGAGATTCCTTGTTAAAAGTAGAATTAAGCATGGTAAATA----------TCG--AGTTTTTATTAGATGTTAAT------AT-TCAGTTTATTGAAGT-TTATACATATCCACTTAT---TCGGGGATCTTCACCATTTATATTTAATCAGTCCGGATTAAATTGCAGTCATCTTGGAGCTTTTTTCGA-TACATTTTACTTTTTTTAATGCATTCTTTT-ATTAATAATCATTCTTTTAATATTTTATAATGGTTCATGCAATAAGTATAGCTCGGACTCATAAA-GAAATTCAGTTAAAAGATGATTTTATATCTGTTCTAATAGCAATGGTATCGTAACTTTCTTTTGTAATGAAGAAGATACAATTGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACAC-TATCATCACTTTTCTCTTATCAAAATAGGTTCTTCTTCTGGTATGTACTCTTGTATCTCTGAAAGTTGACAAATATTTATATTTCCGTTGATGACAAG-TTTTGAATAG-TCGAAT-ACCACAAC--A---GTGGTATAGTGGTAGAGCAAACGGCT--AA-CATGTACA-AGGAGAAACATATGTAGAGTA-AAGACAGAAACTCTTTTT-GAAAATGATACTGATTAACACGTGCTAAAGTAGTGTAGATGTTGTGAGAACGTTCCTGAATTTTC--TTGAATTTGAAAGCAAACTTAAAG--GTTAGATTCTAATTTTACGTA-------------------------AATATTGTTTGACCCAATTCCAT-ACAATAGCTGTTGATTGTCCATT-AATCTTTCAGAATCAACTTAGTTC----AAAACAT-----CTTTAAA-----AA-TGAAT----ACTTTATGACTGCTAAGTTAGATTGAATGCCACCACATATTCTCTGAAGCACGTTTGTTAACCTTTTTTTTAAATATGCAACATTTCTCTGACTGCCATAATTGTAACAAAATATAACCGATACAGTTATTCAAGATTTTATTTT-CTTTCCTATCTA-ATATTGTTATTTC------ATTAAAATTAATAAAAACAAAAACAA--TAATGCA-TCCAATCGGCATTTT----TGATCGATC------ATAAATCACCGCCATCCAG--AA--CAAC-GCAAGTTCCCT-TGTCAAAATTGATTGGTTCACGCACTGCCTCTAT
gi|5 : ggTAAAAGTAGAATTAAGCATGGCAAATATGAAGCCTCTTTATTAA----------ATGTTAAA------AT-TCAGTTTAGTGAAGT-TTAAACATATCCACTTAT---TCGGGGATCTTCGCCGATTATCCATAGTCAGTCCGGATTAAATTGCCGTCATCTTGGAGCTATTTTCCG-TACATATTACTTTTTT-AATGCATTTTTTT-ATTGATAATTATTCTTTT-------TATAATGGTTCATACAATAAGCATAGCGCGGACTCAAAAA-GCAATTCAGATAGAAGATGGTTTTATATCCGTTCTAATACCAATGGTATCGTAACTTTCTTTTGTAGTCAACAAGATACAGTTGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACTCTATCATCACTTT-CTCATATCAAAACAGATTCTTCTTCTGGTATGTCCTCTTGTATCTCTGAAAGATGATGGATATTTAAATTTCCGTTGATGACAAG-TTTTGAATAG-TCG-NN-NNNNNNNN--N---NNNNNNNNNNNNNNNNNNNNNNNNNN--NN-NNNNNNNN-NNNNNGAAAATATGTAGAGTA-AAGA----AACTCTTTTT-GAAAATGATACTGATTAACACGTGCTGAAATAGTGAAGATGTTGTTGGAACGTTATTGAATTTTC---CG---TTGAAAGCAAACGTAAAG--GTTAAACT-TATTTTTTCGTACAATTAT----TGTATAATGGTTTAAGTATTGTATGACCCAATTCCCTTACAAAAGC
gi|6 : gaCGTCACTAGTCGACTCCTCCTTTGAACAACCCGTCGCAGAGATCCCTTGTTAAAAGTAGAATGAAGCATGGCAAATATGAATCCTCTTTATTAA----------ATGTTAAT------AT-TCAGTTTAGTGAAGT-TTATACATATCCACTTAT---TCGGAGATCTTCGCCGATTATCCTTAGTCAGTCCGGATTAAATTGCCGTCATCTTGAAGCTATTTTCCG-TACCTATTAC-TTTTT-AATACCTTTTTTT-ATTGATAATTATACTTTT-------TATAATGGTTCATACAATAAGCATAGCGCGGACTCAAAAATGCAATTCAGATAAAAGATGGTTTTATATCCGTTCTAATACCAATGGTATCGTGACTTTCTTTTGTAGTG---AAGATACAGTTGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTATCATCACTTT-CTCTTATTAAAACAGATTCTTCTTCTGGTATGTCCTTCTGTATCTCTGAAAGATGATGGATATTTAAATTTCCGTTGATGACCAGTTTTTGAATAG-TCGAAT-ACCACAGC--A---GTTGTTTACTGGTAAAGTATCCGATT--CA-CATGCAGA-AGGA-GAAAGTATGTAGAGTA-AAGA----AACTCTTTTT-
gi|7 : TGAAAGTAAT---AACA---------T-TTGAAATCGAAATAGAATTTTGACCTGGTTGCCCTTCCATAGAAATCA--GCCATCTAG--AA--ATAC-GCAAGTTCCCC-TGTCAAAATTGATTGGTTCACGCACTGCCTCTATTTACAGGAGTTTCACTTAAAAAGAAAAAAACAAAGTGTTCGATCAACTTAAATGGGT-ATTACATCGAGACAGTGCCTGTATCAAACATCTATCTCACCTATGCACCTGTCAAAAATATATCTTTGTGATGGAATCAAGATCTTAGAAATCGA-GGACTGTTTGGTTGATGTTGATATTACTCGATAGCGCAGTTACTCGCGCTAGATTCCCTTACCGTAGTTCGTTGTTCAA-TTCTCCAGCGGGAAAACATTTTAATGTCGCTTTATATTTATAGTAGTATTAAATTCAAACAAATCGAGCTAGGCATATGTATGATGATTTGACCTATGACATTGTGTGGAAAGGTCTAGAATTAAAATATCATAAAGAGCAAGAGCAGAACGCAACCGATTAGAAACTCGAG
gi|8 : C----TGTATAA-GGTTTAAGTCTTATTTGATTCCATTTTCTTTCCATAGCTAATCAGT-TTAACCTAATCTTTTAGAACCAGCTTAGTTACAACAAAACACAAACATCGTAAATAGGTAACTCAATTGGAGCTTTATGCTTGTATATTTGGGTTGGATACCACCACCTATTTTCTGAAACACTTTTGTTAACATTTATTTT-ATTATGCAACATTT-CCTGACTGCCATTATTaacacgttcaacttaacgaatcttattat
gi|8 : TATTTT-TTT--------A-ACAATTTA--TTCG-----AATAAAAATGAT---AATAA-----------TGCA-TCAACTCA----TTT----TAACCAATC------AGGAATCATAGCCATCTAACTAATGCTACGGTATGTGCCCT-GGTCAAAATTGAcaagtatttttttaacaatttattcgaataaaaatgataataatgcatcaactcattttaaccaatcaggaatcatagccatctaactaatgctacggtatgtgccctggtcaaaattga
gi|9 : ctgtataaggtttaagtcttatttgattccattttctttccatagctaatcagtttaacctaatcttttagaaccagcttagttacaacaaaacacaaacatcgtaaataggtaactcaattggagctttatgcttgtatatttgggttggataccaccacctattttctgaaacacttttgttaacatttattttattatgcaacatttcctgactgccattattcaagCCGTCACTAGTCGACTGCTCCTTTGAACAATCCGTC
Alignments
lowQualScore : 3333333 11 111 2222222 22222 11 1111 111 11 3333333333 11111 44444444 22222 1111 333333 111 44444444444 1111 111111 111 1 111111 1
lowQualScore : 3 5555555 8 0 0 8 0 1 5 3 00 8 0 444 1 0 6 1 6 6 1111111 6 3 33333 0 5 0 1 5 4 4 55 777 1 00 55 1 2222 8 111 0 11 7777777777 3 2 8 77777 44444444 6 00000 3 7777 1 1 5 1 0 0 0 0 44 0 8 22 1 8 1 77 111111 1 111 88888888888 1 6 4444 999999 5 99 99 6 6 1 0 777 1 1 0 3 1 000000 2 0 0 1 1 0 2 3 3 1 0
lowQualScore : . ....... . . . . . . . . .. . . ... . . . . . . ....... . . ..... . . . . . . . .. ... . .. .. . .... . ... . .. .......... . . . ..... ........ . ..... . .... . . . . . . . . .. . . .. . . . .. ...... . ... ........... . . .... ...... . .. .. . . . . ... . . . . . ...... . . . . . . . . . . .
lowQualScore : 2 2222222 0 8 6 0 6 0 6 2 66 0 8 000 4 8 7 0 7 7 7777777 7 3 88888 7 7 1 0 0 4 0 55 000 8 88 77 3 1111 0 888 8 00 8888888888 2 5 0 66666 66666666 0 00000 8 0000 4 0 6 0 8 8 6 8 66 8 0 22 0 0 4 44 000000 0 777 22222222222 0 7 2222 222222 2 22 22 7 7 0 2 555 2 2 0 2 0 333333 5 0 8 0 2 2 5 5 2 0 8
consensus : CCGTCACTAGTCGACTGCTCCTTTGAACAATCCGTCGCAGAGATCCCTTGTTAAAAGTAGAATTAAGCATGGCAAATAT-GAA-CCTCTT-TATTAAATGT-TAATATTCAGTTTAGTGAAGT-TTATACATATCCACTTAT---TCGGGGATCTTCGCCGATTATCCTTAGTCAGTCCGGATTAAATTGCCGTCATCTTGGAGCTATTTTCCG-TACATNTTACTTTTTT-AATGCATTTTTTT-ATTGATAATTATTCTTTT-------TATAATGGTTCATACAATAAGCATAGCGCGGACTCAAAAA-GCAATTCAGATAAAAGATGGTTTTATATCCGTTCTAATACCAATGGTATCGTAACTTTCTTTTGTAGTGAANAAGATACAGTTGAGGGTTTCTATTCAGGCGGTCCTTATTCGAATCCCTGTGAAAGTTTTTTATTGTTCATCTTTCAAGTAACATCACGTTANNCCTATCATCACTTT-CTCTTATCAAAACAGATTCTTCTTCTGGTATGTCCTCTTGTATCTCTGAAAGNTGACGGATATTTAAATTTCCGTTGATGACAAG-TTTTGAATAG-TCGAAT-ACCACAGC--A---GTGGTTTAGTGGTAGAGCATCCGACTCACATGCAGAAGGAGAAAAGTATGTAGAGTAAAGA----AACTCTTTTTGAAAATGA-TACTGATTAACACGTGCTAAAATAGTGTAGATGTTGTTGGAACGTTACTGAATTTTC--TTGAATTTGAAAGCAAACTTAAAG--GTTAAACTCTAATTTTACGTAC----AC----TGTATAATGGTTTAAGTATTGTTTGACCCAATTCCCTTACAATAGCTGTTGATTGTCAATC-AATCTTTCAGAATCAACTTAGTTA----AAAACAN-----TCTTAAA-----AAATGAAT----ACTTTATGCCTGTTAAGTTGGGTTGAATGCCACCACATATTCTCTGAAGCACGTTTGTTAACATTTTTTTTAAATATGCAACATTTCCCTGACTGCCATAATTGTACCAAAATATAACCGATACGGTTATTCAAGATTTTATTTT-CTTTCTTATCTA-ATATTGTAATTTC------ATTAAAANTAAT---AACAA----AA--T-ATGCA-TCCAATCGGCATTTT----TGATCGATC------AGAAATCACAGCCATCTAG--AA--CTAC-GCAAGTTCCCT-TGTCAAAATTGATTGGTTCACGCACTGCCTCTATTTANTGGAGTTTCACTTAAAGA---AAAATCAAAGTGTTCGATCAACTTAAATGGGT-GTTACATCNAGACAATGCCTGTATCAAACATCTGTCTCACCTATGCACCTGTCGAAAATATATCTATGTGATGGAATCAAGATCTTAGAAATCGA-GGGCTGTTCGGTTGATGTTGATATTACTCGATAGAGCAGTTGTTCGCGCTNGATTCTCTTTCCGAAGGTCGTTGTTCAATTCTCCAGCGGGAAAACATTTTTATGTCGCTTTATATTTATAGTAGTATTAAATTCAAACAAATCGAGCTAGGCATATTTATGATGATTTGACCTATGACATTGTGTGGAAAGGTCTAGAATTAAAATATCATAAAGNGCAAGAGCAGAACAATACCGATTAGAAACTCGAG
Reference ( family-2801 ) : CCGTCACTAGTCGACTGCTCCTTTGAACAATCCGTCGCAGAGATCCCTTGTTAAAAGTAGAATTAAGCATGGCAAATAT-GAA-CCTCTT-TATTAAATGT-TAANATTCAGTTTAGTGAAGT-TTATACATATCCACTTAT---TCGGGGATCTTCGCCGATTATCCTTAGTCAGTCCGGATTAAATTGCCGTCATCTTGGAGCTATTTTCCG-TACATNTTACTTTTTT-AATGCATTTTTTT-ATTGATAATTATTCTTTT-------TATAATGGTTCATACAATAAGCATAGCGCGGACTCAAAAA-GCAATTCAGATAAAAGATGGTTTTATATCCGTTCTAATACCAATGGTATCGTAACTTTCTTTTGTAGTGAANAAGATACAGTTGAGGGTTTCTATTCAGGCGGTCCTTATTCGAATCCCTGTGAAAGTTTTTTATTGTTCATCTTTCAAGTAACATCACGTTACNCCTATCATCACTTT-CTCTTATCAAAACAGATTCTTCTTCTGGTATGTCCTCTTGTATCTCTGAAAGNTGACGGATATTTAAATTTCCGTTGATGACAAG-TTTTGAATAG-TCGAAT-ACCACAGC--A---GTGGTTTAGTGGTAGAGCGTCCGACTCACATGCAGAAGGAGGAAAGTATGTAGAGTAAAGA----AACTCTTTTTGAAAATGA-TACTGATTAACACGTGCTAAAATAGTGTAGATGTTGTTGGAACGTTACTGAATTTTC--TTGAATTTGAAAGCAAACTTAAAG--GTTAAACTCTAATTTTACGTAC----AC----TGTATAATGGTTTAAGTATTGTTTGACCCAATTCCCTTACAATAGCTGTTGATTGTCAATC-AATCTTTCAGAATCAACTTAGTTA----AAAACAN-----TCTTAAA-----AAATGAAT----ACTTTATGCCTGTTAAGTTGGGTTGAATGCCACCACATATTCTCTGAAGCACGTTTGTTAACATTTTTTTTAAATATGCAACATTTCCCTGACTGCCATAATTGTACCAAAATATAACCGATACGGTTATTCAAGATTTTATTTT-CTTTCTTATCTA-ATATTGTAATTTC------ATTAAAANTAAT---AACAA----AA--T-ATGCA-TCCAATCGGCATTTT----TGATCGATC------AGAAATCACAGCCATCTAG--AA--CTAC-GCAAGTTCCCT-TGTCAAAATTGATTGGTTCACGCACTGCCTCTATTTANTGGAGTTTCACTTAAAGA---AAAATCAAAGTGTTCGATCAACTTAAATGGGT-GTTACATCNAGACAATGCCTGTATCAAACATCTGTCTCACCTATGCACCTGTCGAAAATATATCTATGTGATGGAATCAAGATCTTAGAAATCGA-GGGCTGTTCGGTTGATGTTGATATTACTCGATAGAGCAGTTGTTCGCGCTNGATTCTCTTTCCGAAGGTCGTTGTTCAATTCTCCAGCGGGAAAACATTTTTATGTCGCTTTATATTTATAGTAGTATTAAATTCAAACAAATCGAGCTAGGCATATTTATGATGATTTGACCTATGACATTGTGTGGAAAGGTCTAGAATTAAAATATCATAAAGNGCAAGAGCAGAACAATACCGATTAGAAACTCGAG
gi|1 : CCGTCACTAGTCGACTGCAACTTTGAATAATCCGTCGTAGAGATCCCTTGTTAAAAGTAGAATTAAGCATGGCAAA---------------TAT----------ACATGCA--------AAGT-TTATACATATCCATTTAT---TCGGGGATTTTCGTCGATTATCCTTAGACAATCCGGATTGAATTGCCGTCATCTTGGAGCTATTTTCGG-TACATTTTACTTTTTT-AATACTTTTTTTT-ATTAACAATTATTCTTTG-------TATTATGGTTCATACAATAAGCACAGCGCGAACTCAAAAA-GCAAATCAGATAAAGGATGGTTTTATATCCGTTCTAATACCAATTGTATCGTAACTTTCTTTCGTAGCGAAAAAGATACAGTTGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATATCATCCCCTT-CTCTTATCAAACCAG--TCTTCTTCTGATATGTTCTCTTGTATCTCTGGAAGTTGATGAATATTCAAATTTCCGTTGATGACAAG-TTTTGAATAG-TCAAAT-ACCACAGC--A---GTGGTTTAGTGGTAGAGCATCCGACTCACATGAAGAAGATAAAAAGTATGTAGAGTAAAGA----AACTCCTTTTGAAAATAA-TACTGATTAAAACGTGCTAAAATAGTGTAGATGTTGTTGGAACCTTACTGAATTTTC--TTGAATTTGAAAGCAAACTAAAAAATGTTAAACTCTAATTTTACGAAC----AC----TGTATAATGGTTTAACAATTGTTTGATCTAATTCCCTTATTTTAGCTGTTGATTGTCAATC-AATCTTTCAGAACCAACTTAGTTC----AAAA-AC-----TCTT-AA-----AAGTGAAT----ACCTTATGCTTGTTATGTTGGGTTGAATGTCATCACATATTCTCTGAAGCACGGTTGTAAACATTTTTTTAAAATATGCAACATTTTCCTGACTGCCATAATTGTACCAAAATATAACCGATACGGTTATTCAAGATTTTATTTTATTTTTTTATCTA-ATATTGTATTTTC------ATTAAAATTAAT---AACAA----AAT-T-TTTTA-TCCAATCGGCATTTT----TGATCGATC------AGAAAACACAGCCATCTAG--AA--CTAC-GCAAGTTCCCT-TTTCAAAGTTGATTGGCTCACGCACTGCCTCTATTTACTGGAGTTTCACTTAAAGA---AAAACCAAAATGTTCGATCAGCTTAAATGGGTAGTT-CATCCAGACAATGCCTGTATCAAACATCTGTCCCACCTATGCAC---------ATATATCTATGTGATGGAATCAAGATCTTAGAAATCGAGGGGCTGTTCGGTTGATGTAAATATTACTCGAAAGAGCAGTTGTTCGCGCTTGATTCTCTTTCCGAAGGTCGTTGTT--------CAGCGGGAAAACATTTTTATGTCGCTTTATATCTATAATAGTATTAAATTCAAATAAATCGAGTTAGGCATATTTATGATGATTTGACCTATGACATTGTGTGGAAAGGTCTAGAATTAAAATATC---AAGCGCAGGACCAGAACAATACCGATTAGAAACTCGAG
gi|10 : CCGTCACTAGTCGACTGCTCCTTTGAACAATCCGTC
gi|11 : nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnCCGTCACTAGTCGACTGCTCCTTTGAACAATCC
gi|12 : nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnT-CTCTTCACAAAACATATTCTTCTTCTGGTATGTGCGCTTATATCTCTGAAAGTTGACGAAGATTTAAATTTCCGTTGATGACAAG-TTTTGAATAG-TCGATT-TCTACNNN--N---NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGAGACGTATGTACAGC---------AACT-TTTTTGAAA
gi|13 : aAAAATATATCTATGTGAGGGAAT--------------TCGA-GGGCTGTTCGGGTGATGTTGATATTGATCGATAGAGCAGTTGTTCGTGCTTGATTCTCTTTCCGAAGGTCGTTGTTCATTTCTCCAGCGTGAAAACAGTTTTATGTTGCTTTggagcagataattactga
gi|14 : ttTTTGA-TAG-CTAAATCACCGCAGC--G---GTAGTCTAGGGGAAGAGCGTCCGACTCGCA
gi|15 : agATGTCTATTGATG--------TTGAATGGATTAAAT-ACCTCACCTGACCTGTGGATTAGTGGTAGAGTGTCCGCTTCACATcatcaaatacctggaaaatgttacgggaaactccct
gi|16 : atTAAAATATCATAAAGAGCAAGAGCAGAGCAGTGCTGA
gi|17 : -ACCACAGC--A---GTGGTTTAGTGGTAGAGCATCTGacacgttcaatttaacagaccctcattat
gi|18 : agCGTCACTAGTCGACTGCTCCTTTGAACAATCCGTcc
gi|2 : GCAGTTATCTTAAAGCTATTTTTCGGTTCTTTTTACTTTTT--AATGCATTTTTTTTATTAATAAGTATTCTTTT-------TAAAATGGTACATACAATAATCATAACTCGGACTCGTCAA-GCAAATCAGATTAAAGATGGTTTTATATCCGTTATAATACCAATGGTATCGTAACTTTCTTTTGTAGTGAACAAGATACAGTTGAGGGTTTCTATTCAGGCGGTCCTTATTCGAATCCCTGTGAAAGTTTTTTATTGTTCATCTTTCAAGTAACATCACGTT------------------CTCTTATCAAAACAGATTCTTCTTTTGGTATGTCCTGTTGTATCTCTGAAAGTTGGCGAATATTTAAATTTCCGTTGATGACAAG-TTTTAAATAG-TCGAAT-ACCACAGC--A---GTGGCTTAGTG-TAGATCATC--------ATGCAAAAATA--AACGTACGTACATTAAAGA----AATTCTTTTTAAAAAAAAATACTAATTAACACGTGCTAAAATTGTGTAGACGTTGTTGGAACGTTACTGCATTGTC--TTGAATTTGAAAGCAAACTTATAG--GTTAGACTCTAATTTTAGGTAC----------TGTATAATG-TTTAAGTATTATTTGACCCAATTCCCTTACAATAGCTATTGATTGTCAATT-AAGCTTTCAGAATCAACTTAGTTA----AAAA--A-----TCTTAAA-----AAATGGAT----ACTTTATGCCTGTTAAGTTGGGTTGAATTCCACCACATATTCTCTGAAGCACGATTATTAACAATTTTTTTGAATATGCAACATTTCACTGACTGCCATAAGTGTACCAAAATATAACATATACGATTATTCAAGATTTTATTTT-CTTTCTAATCTATATATTTTAATTTC------ATTAAAATTAAT---AAAAA----AAATC-ATTAA-TGCAATCGGCTTTTC----TGATCAATC------AGAAATCAAAGCCATCTAG--AA--CTAT-CCAAGTTCCCT-TGTCAAAATTGATTGGTTCACGCACTGTCTCTATTAAGTGGAGTTTCACTTAAATA---ATTATCAAAGTGATCGATCCACTTAAATGGTC-GTTACATCAAGACAATGCCTGTATCAAACATCTGTTTCACCTATGCATCTGTTGAAAATATATCTATGTGATGTAATCAAGATCTTAGAAATGGA-AGAATGTTCGATTGATGTTGATATAACTCGATAAAGCAGATGGCAGCGCTGGATTCTCTTTCCAGAGATCGTTGTTCAATTCTCCAGCGGGAAAACATTTTTTTGTCGCTTTATATTAATAGTAATATTTAATTCAAACAAATCGAGCTAGGCATATTTATGATGATTTGACCTATGGCATTGTGTCGAAAGGTCTAGAATCAAAATATCATAAAGCGCAATTGCAGAACAATACTGATTAGAAACTCGAG
gi|3 : aaaCTTATGTTAAAGGTATCATAT-AAATTTA---AAGTATTATTTA-ATTTACGCATCAGTCGGGGATCTTCGCCGATTATCCATAGTCAG-----ATTAAATTGCCGTCATCTTGGAGCTATTTTCCG-TACATATTACTTTTTT-AATGCATTTTTTT-ATTGATAATTAATCTTTT-------CATAATGGTTGATACAATAAGCATAGCGCGGACTCAAAAA-ACAATTCAGATAAAAGATGGTTTTATATCCGTTCTAACACCAATGGTATCGTAACTTTCTTTTGTAGTGAAGAAGATACAGTTGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-CTCTTATCAAAACAGATTCTTCTTCTGGTATGTCCTCTTGTATCTCTGAAAGATGATGGATATTTAAATTTCCGTTGATGACAAG-TTTTGAATAG-TCGAAT-ACCACAGC--A---GTGGTTTAGTGGTAGAGTATCCGATTCACATTCAGAAGGAG-AAAGTATGTAGAGTAAAGA----AACTCTTTTTGAAAATGA-TACTGATTAACACGCGCTAAAATAGTGTAGATGTTGTTGGAACGTTATTGAATTTTCCGTTGAATTTGAAAGCAAACTTAAAG--GTTAAACTCTAATTTTACGTAC----ACTTATTGTATAATGGTTTAAGTATTGTTTGACCTAATTCCCTTACAATAGCTGTTGATTGTTAATC-AATCTTTCAGAATCAACTTAGTTA----AAAA-AA-----TGTTAAA-----AAATG---------------------AAGTTAGCTTGAATGCCACCAC--ATTCTCTGAAGCTCGTTTGTTAACATTTTTTTTAAATATGCAACAGTTCCCTGACTGCCATAATTGTACCAAAATATAACCGATACTATTATTCAAGATTTTATTTT-CTTTTTTATCTA-AAAAAGTTATTTCATAGTAATTAATAAAAAT---AACAA----AA----ATGCA-TCCAATCGGCATTTT----TGATCGATC------AGAAATCACAGCCATCTGG--AA--CTAC-GCAAGTTCCCCATGTCAAAATTGATTGGTTCACGCACTCTCTCTATTTAGTGGAGTTTCACTTAAAGA---AAAATCAAAGTGCTCGATCAACTTAAATGGGT-GTTAGGTCCAGAAAATGCCTGTATCAAACATCGGTCTCaacacgttcaacttaacgactctcaatat
gi|4 : aaagtagaaatgaagattaaaggtaatggaacatgtttagactaattataCCGTCACAGAGATTCCTTGTTAAAAGTAGAATTAAGCATGGTAAATATCGAG---TTTT-TATTAGATGT-TAATATTCAGTTTATTGAAGT-TTATACATATCCACTTAT---TCGGGGATCTTCACCATTTATATTTAATCAGTCCGGATTAAATTGCAGTCATCTTGGAGCTTTTTTCGA-TACATTTTACTTTTTTTAATGCATTCTTTT-ATTAATAATCATTCTTTTAATATTTTATAATGGTTCATGCAATAAGTATAGCTCGGACTCATAAA-GAAATTCAGTTAAAAGATGATTTTATATCTGTTCTAATAGCAATGGTATCGTAACTTTCTTTTGTAATGAAGAAGATACAATTGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACAC-TATCATCACTTTTCTCTTATCAAAATAGGTTCTTCTTCTGGTATGTACTCTTGTATCTCTGAAAGTTGACAAATATTTATATTTCCGTTGATGACAAG-TTTTGAATAG-TCGAAT-ACCACAAC--A---GTGGTATAGTGGTAGAGCAAACGGCTAACATGTACAAGGAGAAACATATGTAGAGTAAAGACAGAAACTCTTTTTGAAAATGA-TACTGATTAACACGTGCTAAAGTAGTGTAGATGTTGTGAGAACGTTCCTGAATTTTC--TTGAATTTGAAAGCAAACTTAAAG--GTTAGATTCTAATTTTACGTA-------------------------AATATTGTTTGACCCAATTCCAT-ACAATAGCTGTTGATTGTCCATT-AATCTTTCAGAATCAACTTAGTTC----AAAACA------TCTTTAA-----AAATGAAT----ACTTTATGACTGCTAAGTTAGATTGAATGCCACCACATATTCTCTGAAGCACGTTTGTTAACCTTTTTTTTAAATATGCAACATTTCTCTGACTGCCATAATTGTAACAAAATATAACCGATACAGTTATTCAAGATTTTATTTT-CTTTCCTATCTA-ATATTGTTATTTC------ATTAAAATTAATAAAAACAAAAACAA--TAATGCA-TCCAATCGGCATTTT----TGATCGATC------ATAAATCACCGCCATCCAG--AA--CAAC-GCAAGTTCCCT-TGTCAAAATTGATTGGTTCACGCACTGCCTCTAT
gi|5 : ggTAAAAGTAGAATTAAGCATGGCAAATAT-GAAGCCTCTT-TATTAAATGT-TAAAATTCAGTTTAGTGAAGT-TTAAACATATCCACTTAT---TCGGGGATCTTCGCCGATTATCCATAGTCAGTCCGGATTAAATTGCCGTCATCTTGGAGCTATTTTCCG-TACATATTACTTTTTT-AATGCATTTTTTT-ATTGATAATTATTCTTTT-------TATAATGGTTCATACAATAAGCATAGCGCGGACTCAAAAA-GCAATTCAGATAGAAGATGGTTTTATATCCGTTCTAATACCAATGGTATCGTAACTTTCTTTTGTAGTCAACAAGATACAGTTGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACTCTATCATCACTTT-CTCATATCAAAACAGATTCTTCTTCTGGTATGTCCTCTTGTATCTCTGAAAGATGATGGATATTTAAATTTCCGTTGATGACAAG-TTTTGAATAG-TCG-NN-NNNNNNNN--N---NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGAAAATATGTAGAGTAAAGA----AACTCTTTTTGAAAATGA-TACTGATTAACACGTGCTGAAATAGTGAAGATGTTGTTGGAACGTTATTGAATTTTC---CG---TTGAAAGCAAACGTAAAG--GTTAAACT-TATTTTTTCGTACAATTAT----TGTATAATGGTTTAAGTATTGTATGACCCAATTCCCTTACAAAAGC
gi|6 : gaCGTCACTAGTCGACTCCTCCTTTGAACAACCCGTCGCAGAGATCCCTTGTTAAAAGTAGAATGAAGCATGGCAAATAT-GAATCCTCTT-TATTAAATGT-TAATATTCAGTTTAGTGAAGT-TTATACATATCCACTTAT---TCGGAGATCTTCGCCGATTATCCTTAGTCAGTCCGGATTAAATTGCCGTCATCTTGAAGCTATTTTCCG-TACCTATTAC-TTTTT-AATACCTTTTTTT-ATTGATAATTATACTTTT-------TATAATGGTTCATACAATAAGCATAGCGCGGACTCAAAAATGCAATTCAGATAAAAGATGGTTTTATATCCGTTCTAATACCAATGGTATCGTGACTTTCTTTTGTAGTG---AAGATACAGTTGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTATCATCACTTT-CTCTTATTAAAACAGATTCTTCTTCTGGTATGTCCTTCTGTATCTCTGAAAGATGATGGATATTTAAATTTCCGTTGATGACCAGTTTTTGAATAG-TCGAAT-ACCACAGC--A---GTTGTTTACTGGTAAAGTATCCGATTCACATGCAGAAGGA-GAAAGTATGTAGAGTAAAGA----AACTCTTTTT
gi|7 : TGAAAGTAAT---AACA---------T-TTGAAATCGAAATAGAATTTTGACCTGGTTGCCCTTCCATAGAAATCA--GCCATCTAG--AA--ATAC-GCAAGTTCCCC-TGTCAAAATTGATTGGTTCACGCACTGCCTCTATTTACAGGAGTTTCACTTAAAAAGAAAAAAACAAAGTGTTCGATCAACTTAAATGGGT-ATTACATCGAGACAGTGCCTGTATCAAACATCTATCTCACCTATGCACCTGTCAAAAATATATCTTTGTGATGGAATCAAGATCTTAGAAATCGA-GGACTGTTTGGTTGATGTTGATATTACTCGATAGCGCAGTTACTCGCGCTAGATTCCCTTACCGTAGTTCGTTGTTCAATTCTCCAGCGGGAAAACATTTTAATGTCGCTTTATATTTATAGTAGTATTAAATTCAAACAAATCGAGCTAGGCATATGTATGATGATTTGACCTATGACATTGTGTGGAAAGGTCTAGAATTAAAATATCATAAAGAGCAAGAGCAGAACGCAACCGATTAGAAACTCGAG
gi|8 : C----TGTATAA-GGTTTAAGTCTTATTTGATTCCATTTTCTTTCCATAGCTAATCAGT-TTAACCTAATCTTTTAGAACCAGCTTAGTTACAACAAAACACAAACATCGTAAATAGGTAACTCAATTGGAGCTTTATGCTTGTATATTTGGGTTGGATACCACCACCTATTTTCTGAAACACTTTTGTTAACATTTATTTTAT-TATGCAACATTTCC-TGAC-----------TGCCA-----------------TTATTCAAG----TATTTT-TTT--------A-ACAATTTA--TTCG-----AATAAAAATGAT---AATAA-----------TGCA-TCAACTCA----TTT----TAACCAATC------AGGAATCATAGCCATCTAACTAATGCTACGGTATGTGCCCT-GGTCAAAATTGAaacacgttcaacttaacgaatcttattat
gi|9 : CCGTCACTAGTCGACTGCTCCTTTGAACAATCCGTC
Alignments
lowQualScore : 3333333 11 111 2222222 22222 1111 111 11 3333333333 11111 44444444 22222 1111 333333 111 44444444444 1111 111111 111 1 111111 1
lowQualScore : 3 5555555 8 999 5 3 00 8 0 444 1 0 6 1 6 6 1111111 6 3 33333 0 5 0 1 5 4 4 55 777 00 0 8 2222 8 111 0 11 7777777777 3 2 8 77777 44444444 6 00000 3 7777 1 1 5 1 0 0 0 0 44 0 8 22 1 8 1 77 111111 1 111 88888888888 1 6 4444 999999 5 99 99 6 6 1 0 777 1 1 0 3 1 000000 2 0 0 1 1 0 2 3 3 1 0
lowQualScore : . ....... . ... . . .. . . ... . . . . . . ....... . . ..... . . . . . . . .. ... .. . . .... . ... . .. .......... . . . ..... ........ . ..... . .... . . . . . . . . .. . . .. . . . .. ...... . ... ........... . . .... ...... . .. .. . . . . ... . . . . . ...... . . . . . . . . . . .
lowQualScore : 2 2222222 0 444 6 2 66 0 8 000 4 8 7 0 7 7 7777777 7 3 33333 7 7 1 0 0 4 0 55 000 88 3 3 1111 0 888 8 00 8888888888 2 5 0 66666 66666666 0 00000 8 0000 4 0 6 0 8 8 6 8 66 8 0 22 0 0 4 44 000000 0 777 22222222222 0 7 2222 222222 2 22 22 7 7 0 2 555 2 2 0 2 0 333333 5 0 8 0 2 2 5 5 2 0 8
consensus : CCGTCACTAGTCGACTGCTCCTTTGAACAATCCGTCGCAGAGATCCCTTGTTAAAAGTAGAATTAAGCATGGCAAATAT-GAA-CCTCTT-TATTAAATGT-TAATATTCAGTTTAGTGAAGT-TTATACATATCCACTTAT---TCGGGGATCTTCGCCGATTATCCTTAGTCAGTCCGGATTAAATTGCCGTCATCTTGGAGCTATTTTCCG-TACATNTTACTTTTTT-AATGCATTTTTTT-ATTGATAATTATTCTTTT-------TATAATGGTTCATACAATAAGCATAGCGCGGACTCAAAAA-GCAATTCAGATAAAAGATGGTTTTATATCCGTTCTAATACCAATGGTATCGTAACTTTCTTTTGTAGTGAANAAGATACAGTTGAGGGTTTCTATTCAGGCGGTCCTTATTCGAATCCCTGTGAAAGTTTTTTATTGTTCATCTTTCAAGTAACATCACGTTANNCCTATCATCACTTT-CTCTTATCAAAACAGATTCTTCTTCTGGTATGTCCTCTTGTATCTCTGAAAGNTGACGGATATTTAAATTTCCGTTGATGACAAG-TTTTGAATAG-TCGAAT-ACCACAGC--A---GTGGTTTAGTGGTAGAGCATCCGACTCACATGCAGAAGGAGAAACGTATGTAGAGTAAAGA----AACTCTTTTTGAAAATGA-TACTGATTAACACGTGCTAAAATAGTGTAGATGTTGTTGGAACGTTACTGAATTTTC--TTGAATTTGAAAGCAAACTTAAAG--GTTAAACTCTAATTTTACGTAC----AC----TGTATAATGGTTTAAGTATTGTTTGACCCAATTCCCTTACAATAGCTGTTGATTGTCAATC-AATCTTTCAGAATCAACTTAGTTA----AAAACAN-----TCTTAAA-----AAATGAAT----ACTTTATGCCTGTTAAGTTGGGTTGAATGCCACCACATATTCTCTGAAGCACGTTTGTTAACATTTTTTTTAAATATGCAACATTTCCCTGACTGCCATAATTGTACCAAAATATAACCGATACGGTTATTCAAGATTTTATTTT-CTTTCTTATCTA-ATATTGTAATTTC------ATTAAAANTAAT---AACAA----AA--T-ATGCA-TCCAATCGGCATTTT----TGATCGATC------AGAAATCACAGCCATCTAG--AA--CTAC-GCAAGTTCCCT-TGTCAAAATTGATTGGTTCACGCACTGCCTCTATTTANTGGAGTTTCACTTAAAGA---AAAATCAAAGTGTTCGATCAACTTAAATGGGT-GTTACATCNAGACAATGCCTGTATCAAACATCTGTCTCACCTATGCACCTGTCGAAAATATATCTATGTGATGGAATCAAGATCTTAGAAATCGA-GGGCTGTTCGGTTGATGTTGATATTACTCGATAGAGCAGTTGTTCGCGCTNGATTCTCTTTCCGAAGGTCGTTGTTCAATTCTCCAGCGGGAAAACATTTTTATGTCGCTTTATATTTATAGTAGTATTAAATTCAAACAAATCGAGCTAGGCATATTTATGATGATTTGACCTATGACATTGTGTGGAAAGGTCTAGAATTAAAATATCATAAAGNGCAAGAGCAGAACAATACCGATTAGAAACTCGAG
Reference ( family-2801 ) : CCGTCACTAGTCGACTGCTCCTTTGAACAATCCGTCGCAGAGATCCCTTGTTAAAAGTAGAATTAAGCATGGCAAATAT-GAA-CCTCTT-TATTAAATGT-TAATATTCAGTTTAGTGAAGT-TTATACATATCCACTTAT---TCGGGGATCTTCGCCGATTATCCTTAGTCAGTCCGGATTAAATTGCCGTCATCTTGGAGCTATTTTCCG-TACATNTTACTTTTTT-AATGCATTTTTTT-ATTGATAATTATTCTTTT-------TATAATGGTTCATACAATAAGCATAGCGCGGACTCAAAAA-GCAATTCAGATAAAAGATGGTTTTATATCCGTTCTAATACCAATGGTATCGTAACTTTCTTTTGTAGTGAANAAGATACAGTTGAGGGTTTCTATTCAGGCGGTCCTTATTCGAATCCCTGTGAAAGTTTTTTATTGTTCATCTTTCAAGTAACATCACGTTANNCCTATCATCACTTT-CTCTTATCAAAACAGATTCTTCTTCTGGTATGTCCTCTTGTATCTCTGAAAGNTGACGGATATTTAAATTTCCGTTGATGACAAG-TTTTGAATAG-TCGAAT-ACCACAGC--A---GTGGTTTAGTGGTAGAGCATCCGACTCACATGCAGAAGGAGAAAAGTATGTAGAGTAAAGA----AACTCTTTTTGAAAATGA-TACTGATTAACACGTGCTAAAATAGTGTAGATGTTGTTGGAACGTTACTGAATTTTC--TTGAATTTGAAAGCAAACTTAAAG--GTTAAACTCTAATTTTACGTAC----AC----TGTATAATGGTTTAAGTATTGTTTGACCCAATTCCCTTACAATAGCTGTTGATTGTCAATC-AATCTTTCAGAATCAACTTAGTTA----AAAACAN-----TCTTAAA-----AAATGAAT----ACTTTATGCCTGTTAAGTTGGGTTGAATGCCACCACATATTCTCTGAAGCACGTTTGTTAACATTTTTTTTAAATATGCAACATTTCCCTGACTGCCATAATTGTACCAAAATATAACCGATACGGTTATTCAAGATTTTATTTT-CTTTCTTATCTA-ATATTGTAATTTC------ATTAAAANTAAT---AACAA----AA--T-ATGCA-TCCAATCGGCATTTT----TGATCGATC------AGAAATCACAGCCATCTAG--AA--CTAC-GCAAGTTCCCT-TGTCAAAATTGATTGGTTCACGCACTGCCTCTATTTANTGGAGTTTCACTTAAAGA---AAAATCAAAGTGTTCGATCAACTTAAATGGGT-GTTACATCNAGACAATGCCTGTATCAAACATCTGTCTCACCTATGCACCTGTCGAAAATATATCTATGTGATGGAATCAAGATCTTAGAAATCGA-GGGCTGTTCGGTTGATGTTGATATTACTCGATAGAGCAGTTGTTCGCGCTNGATTCTCTTTCCGAAGGTCGTTGTTCAATTCTCCAGCGGGAAAACATTTTTATGTCGCTTTATATTTATAGTAGTATTAAATTCAAACAAATCGAGCTAGGCATATTTATGATGATTTGACCTATGACATTGTGTGGAAAGGTCTAGAATTAAAATATCATAAAGNGCAAGAGCAGAACAATACCGATTAGAAACTCGAG
gi|1 : CCGTCACTAGTCGACTGCAACTTTGAATAATCCGTCGTAGAGATCCCTTGTTAAAAGTAGAATTAAGCATGGCA----------------------AATAT---ACATGCA--------AAGT-TTATACATATCCATTTAT---TCGGGGATTTTCGTCGATTATCCTTAGACAATCCGGATTGAATTGCCGTCATCTTGGAGCTATTTTCGG-TACATTTTACTTTTTT-AATACTTTTTTTT-ATTAACAATTATTCTTTG-------TATTATGGTTCATACAATAAGCACAGCGCGAACTCAAAAA-GCAAATCAGATAAAGGATGGTTTTATATCCGTTCTAATACCAATTGTATCGTAACTTTCTTTCGTAGCGAAAAAGATACAGTTGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATATCATCCCCTT-CTCTTATCAAACCAG--TCTTCTTCTGATATGTTCTCTTGTATCTCTGGAAGTTGATGAATATTCAAATTTCCGTTGATGACAAG-TTTTGAATAG-TCAAAT-ACCACAGC--A---GTGGTTTAGTGGTAGAGCATCCGACTCACATGAAGAAGATAAAAAGTATGTAGAGTAAAGA----AACTCCTTTTGAAAATAA-TACTGATTAAAACGTGCTAAAATAGTGTAGATGTTGTTGGAACCTTACTGAATTTTC--TTGAATTTGAAAGCAAACTAAAAAATGTTAAACTCTAATTTTACGAAC----AC----TGTATAATGGTTTAACAATTGTTTGATCTAATTCCCTTATTTTAGCTGTTGATTGTCAATC-AATCTTTCAGAACCAACTTAGTTC----AAAA-AC-----TCTT-AA-----AAGTGAAT----ACCTTATGCTTGTTATGTTGGGTTGAATGTCATCACATATTCTCTGAAGCACGGTTGTAAACATTTTTTTAAAATATGCAACATTTTCCTGACTGCCATAATTGTACCAAAATATAACCGATACGGTTATTCAAGATTTTATTTTATTTTTTTATCTA-ATATTGTATTTTC------ATTAAAATTAAT---AACAA----AAT-T-TTTTA-TCCAATCGGCATTTT----TGATCGATC------AGAAAACACAGCCATCTAG--AA--CTAC-GCAAGTTCCCT-TTTCAAAGTTGATTGGCTCACGCACTGCCTCTATTTACTGGAGTTTCACTTAAAGA---AAAACCAAAATGTTCGATCAGCTTAAATGGGTAGTT-CATCCAGACAATGCCTGTATCAAACATCTGTCCCACCTATGCAC---------ATATATCTATGTGATGGAATCAAGATCTTAGAAATCGAGGGGCTGTTCGGTTGATGTAAATATTACTCGAAAGAGCAGTTGTTCGCGCTTGATTCTCTTTCCGAAGGTCGTTGTT--------CAGCGGGAAAACATTTTTATGTCGCTTTATATCTATAATAGTATTAAATTCAAATAAATCGAGTTAGGCATATTTATGATGATTTGACCTATGACATTGTGTGGAAAGGTCTAGAATTAAAATATC---AAGCGCAGGACCAGAACAATACCGATTAGAAACTCGAG
gi|10 : CCGTCACTAGTCGACTGCTCCTTTGAACAATCCGTC
gi|11 : nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnCCGTCACTAGTCGACTGCTCCTTTGAACAATCC
gi|12 : nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnT-CTCTTCACAAAACATATTCTTCTTCTGGTATGTGCGCTTATATCTCTGAAAGTTGACGAAGATTTAAATTTCCGTTGATGACAAG-TTTTGAATAG-TCGATT-TCTACNNN--N---NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGAGACGTATGTACAGC---------AACT-TTTTTGAAA
gi|13 : aAAAATATATCTATGTGAGGGAAT--------------TCGA-GGGCTGTTCGGGTGATGTTGATATTGATCGATAGAGCAGTTGTTCGTGCTTGATTCTCTTTCCGAAGGTCGTTGTTCATTTCTCCAGCGTGAAAACAGTTTTATGTTGCTTTggagcagataattactga
gi|14 : ttTTTGA-TAG-CTAAATCACCGCAGC--G---GTAGTCTAGGGGAAGAGCGTCCGACTCGCA
gi|15 : agATGTCTATTGATG--------TTGAATGGATTAAAT-ACCTCACCTGACCTGTGGATTAGTGGTAGAGTGTCCGCTTCACATcatcaaatacctggaaaatgttacgggaaactccct
gi|16 : atTAAAATATCATAAAGAGCAAGAGCAGAGCAGTGCTGA
gi|17 : -ACCACAGC--A---GTGGTTTAGTGGTAGAGCATCTGacacgttcaatttaacagaccctcattat
gi|18 : agCGTCACTAGTCGACTGCTCCTTTGAACAATCCGTcc
gi|2 : GCAGTTATCTTAAAGCTATTTTTCGGTTCTTTTTACTTTTT--AATGCATTTTTTTTATTAATAAGTATTCTTTT-------TAAAATGGTACATACAATAATCATAACTCGGACTCGTCAA-GCAAATCAGATTAAAGATGGTTTTATATCCGTTATAATACCAATGGTATCGTAACTTTCTTTTGTAGTGAACAAGATACAGTTGAGGGTTTCTATTCAGGCGGTCCTTATTCGAATCCCTGTGAAAGTTTTTTATTGTTCATCTTTCAAGTAACATCACGTT------------------CTCTTATCAAAACAGATTCTTCTTTTGGTATGTCCTGTTGTATCTCTGAAAGTTGGCGAATATTTAAATTTCCGTTGATGACAAG-TTTTAAATAG-TCGAAT-ACCACAGC--A---GTGGCTTAGTG-TAGATCATC--------ATGCAAAA--ATAAACGTACGTACATTAAAGA----AATTCTTTTTAAAAAAAAATACTAATTAACACGTGCTAAAATTGTGTAGACGTTGTTGGAACGTTACTGCATTGTC--TTGAATTTGAAAGCAAACTTATAG--GTTAGACTCTAATTTTAGGTAC----------TGTATAATG-TTTAAGTATTATTTGACCCAATTCCCTTACAATAGCTATTGATTGTCAATT-AAGCTTTCAGAATCAACTTAGTTA----AAAA--A-----TCTTAAA-----AAATGGAT----ACTTTATGCCTGTTAAGTTGGGTTGAATTCCACCACATATTCTCTGAAGCACGATTATTAACAATTTTTTTGAATATGCAACATTTCACTGACTGCCATAAGTGTACCAAAATATAACATATACGATTATTCAAGATTTTATTTT-CTTTCTAATCTATATATTTTAATTTC------ATTAAAATTAAT---AAAAA----AAATC-ATTAA-TGCAATCGGCTTTTC----TGATCAATC------AGAAATCAAAGCCATCTAG--AA--CTAT-CCAAGTTCCCT-TGTCAAAATTGATTGGTTCACGCACTGTCTCTATTAAGTGGAGTTTCACTTAAATA---ATTATCAAAGTGATCGATCCACTTAAATGGTC-GTTACATCAAGACAATGCCTGTATCAAACATCTGTTTCACCTATGCATCTGTTGAAAATATATCTATGTGATGTAATCAAGATCTTAGAAATGGA-AGAATGTTCGATTGATGTTGATATAACTCGATAAAGCAGATGGCAGCGCTGGATTCTCTTTCCAGAGATCGTTGTTCAATTCTCCAGCGGGAAAACATTTTTTTGTCGCTTTATATTAATAGTAATATTTAATTCAAACAAATCGAGCTAGGCATATTTATGATGATTTGACCTATGGCATTGTGTCGAAAGGTCTAGAATCAAAATATCATAAAGCGCAATTGCAGAACAATACTGATTAGAAACTCGAG
gi|3 : aaaCTTATGTTAAAGGTATCATAT-AAATTTA---AAGTATTATTTA-ATTTACGCATCAGTCGGGGATCTTCGCCGATTATCCATAGTCAG-----ATTAAATTGCCGTCATCTTGGAGCTATTTTCCG-TACATATTACTTTTTT-AATGCATTTTTTT-ATTGATAATTAATCTTTT-------CATAATGGTTGATACAATAAGCATAGCGCGGACTCAAAAA-ACAATTCAGATAAAAGATGGTTTTATATCCGTTCTAACACCAATGGTATCGTAACTTTCTTTTGTAGTGAAGAAGATACAGTTGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-CTCTTATCAAAACAGATTCTTCTTCTGGTATGTCCTCTTGTATCTCTGAAAGATGATGGATATTTAAATTTCCGTTGATGACAAG-TTTTGAATAG-TCGAAT-ACCACAGC--A---GTGGTTTAGTGGTAGAGTATCCGATTCACATTCAGAAGGAGAAA-GTATGTAGAGTAAAGA----AACTCTTTTTGAAAATGA-TACTGATTAACACGCGCTAAAATAGTGTAGATGTTGTTGGAACGTTATTGAATTTTCCGTTGAATTTGAAAGCAAACTTAAAG--GTTAAACTCTAATTTTACGTAC----ACTTATTGTATAATGGTTTAAGTATTGTTTGACCTAATTCCCTTACAATAGCTGTTGATTGTTAATC-AATCTTTCAGAATCAACTTAGTTA----AAAA-AA-----TGTTAAA-----AAATG---------------------AAGTTAGCTTGAATGCCACCAC--ATTCTCTGAAGCTCGTTTGTTAACATTTTTTTTAAATATGCAACAGTTCCCTGACTGCCATAATTGTACCAAAATATAACCGATACTATTATTCAAGATTTTATTTT-CTTTTTTATCTA-AAAAAGTTATTTCATAGTAATTAATAAAAAT---AACAA----AA----ATGCA-TCCAATCGGCATTTT----TGATCGATC------AGAAATCACAGCCATCTGG--AA--CTAC-GCAAGTTCCCCATGTCAAAATTGATTGGTTCACGCACTCTCTCTATTTAGTGGAGTTTCACTTAAAGA---AAAATCAAAGTGCTCGATCAACTTAAATGGGT-GTTAGGTCCAGAAAATGCCTGTATCAAACATCGGTCTCaacacgttcaacttaacgactctcaatat
gi|4 : aaagtagaaatgaagattaaaggtaatggaacatgtttagactaattataCCGTCACAGAGATTCCTTGTTAAAAGTAGAATTAAGCATGGTAAATATCGAG---TTTT-TATTAGATGT-TAATATTCAGTTTATTGAAGT-TTATACATATCCACTTAT---TCGGGGATCTTCACCATTTATATTTAATCAGTCCGGATTAAATTGCAGTCATCTTGGAGCTTTTTTCGA-TACATTTTACTTTTTTTAATGCATTCTTTT-ATTAATAATCATTCTTTTAATATTTTATAATGGTTCATGCAATAAGTATAGCTCGGACTCATAAA-GAAATTCAGTTAAAAGATGATTTTATATCTGTTCTAATAGCAATGGTATCGTAACTTTCTTTTGTAATGAAGAAGATACAATTGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACAC-TATCATCACTTTTCTCTTATCAAAATAGGTTCTTCTTCTGGTATGTACTCTTGTATCTCTGAAAGTTGACAAATATTTATATTTCCGTTGATGACAAG-TTTTGAATAG-TCGAAT-ACCACAAC--A---GTGGTATAGTGGTAGAGCAAACGGCTAACATGTACAAGGAGAAACATATGTAGAGTAAAGACAGAAACTCTTTTTGAAAATGA-TACTGATTAACACGTGCTAAAGTAGTGTAGATGTTGTGAGAACGTTCCTGAATTTTC--TTGAATTTGAAAGCAAACTTAAAG--GTTAGATTCTAATTTTACGTA-------------------------AATATTGTTTGACCCAATTCCAT-ACAATAGCTGTTGATTGTCCATT-AATCTTTCAGAATCAACTTAGTTC----AAAACA------TCTTTAA-----AAATGAAT----ACTTTATGACTGCTAAGTTAGATTGAATGCCACCACATATTCTCTGAAGCACGTTTGTTAACCTTTTTTTTAAATATGCAACATTTCTCTGACTGCCATAATTGTAACAAAATATAACCGATACAGTTATTCAAGATTTTATTTT-CTTTCCTATCTA-ATATTGTTATTTC------ATTAAAATTAATAAAAACAAAAACAA--TAATGCA-TCCAATCGGCATTTT----TGATCGATC------ATAAATCACCGCCATCCAG--AA--CAAC-GCAAGTTCCCT-TGTCAAAATTGATTGGTTCACGCACTGCCTCTAT
gi|5 : ggTAAAAGTAGAATTAAGCATGGCAAATAT-GAAGCCTCTT-TATTAAATGT-TAAAATTCAGTTTAGTGAAGT-TTAAACATATCCACTTAT---TCGGGGATCTTCGCCGATTATCCATAGTCAGTCCGGATTAAATTGCCGTCATCTTGGAGCTATTTTCCG-TACATATTACTTTTTT-AATGCATTTTTTT-ATTGATAATTATTCTTTT-------TATAATGGTTCATACAATAAGCATAGCGCGGACTCAAAAA-GCAATTCAGATAGAAGATGGTTTTATATCCGTTCTAATACCAATGGTATCGTAACTTTCTTTTGTAGTCAACAAGATACAGTTGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACTCTATCATCACTTT-CTCATATCAAAACAGATTCTTCTTCTGGTATGTCCTCTTGTATCTCTGAAAGATGATGGATATTTAAATTTCCGTTGATGACAAG-TTTTGAATAG-TCGNNN-NNNNNNNN--N---NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGAAAA-TATGTAGAGTAAAGA----AACTCTTTTTGAAAATGA-TACTGATTAACACGTGCTGAAATAGTGAAGATGTTGTTGGAACGTTATTGAATTTTC---CG---TTGAAAGCAAACGTAAAG--GTTAAACT-TATTTTTTCGTACAATTAT----TGTATAATGGTTTAAGTATTGTATGACCCAATTCCCTTACAAAAGC
gi|6 : gaCGTCACTAGTCGACTCCTCCTTTGAACAACCCGTCGCAGAGATCCCTTGTTAAAAGTAGAATGAAGCATGGCAAATAT-GAATCCTCTT-TATTAAATGT-TAATATTCAGTTTAGTGAAGT-TTATACATATCCACTTAT---TCGGAGATCTTCGCCGATTATCCTTAGTCAGTCCGGATTAAATTGCCGTCATCTTGAAGCTATTTTCCG-TACCTATTAC-TTTTT-AATACCTTTTTTT-ATTGATAATTATACTTTT-------TATAATGGTTCATACAATAAGCATAGCGCGGACTCAAAAATGCAATTCAGATAAAAGATGGTTTTATATCCGTTCTAATACCAATGGTATCGTGACTTTCTTTTGTAGTG---AAGATACAGTTGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTATCATCACTTT-CTCTTATTAAAACAGATTCTTCTTCTGGTATGTCCTTCTGTATCTCTGAAAGATGATGGATATTTAAATTTCCGTTGATGACCAGTTTTTGAATAG-TCGAAT-ACCACAGC--A---GTTGTTTACTGGTAAAGTATCCGATTCACATGCAGAAGGAG-AAAGTATGTAGAGTAAAGA----AACTCTTTTT
gi|7 : TGAAAGTAAT---AACA---------T-TTGAAATCGAAATAGAATTTTGACCTGGTTGCCCTTCCATAGAAATCA--GCCATCTAG--AA--ATAC-GCAAGTTCCCC-TGTCAAAATTGATTGGTTCACGCACTGCCTCTATTTACAGGAGTTTCACTTAAAAAGAAAAAAACAAAGTGTTCGATCAACTTAAATGGGT-ATTACATCGAGACAGTGCCTGTATCAAACATCTATCTCACCTATGCACCTGTCAAAAATATATCTTTGTGATGGAATCAAGATCTTAGAAATCGA-GGACTGTTTGGTTGATGTTGATATTACTCGATAGCGCAGTTACTCGCGCTAGATTCCCTTACCGTAGTTCGTTGTTCAATTCTCCAGCGGGAAAACATTTTAATGTCGCTTTATATTTATAGTAGTATTAAATTCAAACAAATCGAGCTAGGCATATGTATGATGATTTGACCTATGACATTGTGTGGAAAGGTCTAGAATTAAAATATCATAAAGAGCAAGAGCAGAACGCAACCGATTAGAAACTCGAG
gi|8 : C----TGTATAA-GGTTTAAGTCTTATTTGATTCCATTTTCTTTCCATAGCTAATCAGT-TTAACCTAATCTTTTAGAACCAGCTTAGTTACAACAAAACACAAACATCGTAAATAGGTAACTCAATTGGAGCTTTATGCTTGTATATTTGGGTTGGATACCACCACCTATTTTCTGAAACACTTTTGTTAACATTTATTTTAT-TATGCAACATTTCC-TGAC-----------TGCCA-----------------TTATTCAAG----TATTTT-TTT--------A-ACAATTTA--TTCG-----AATAAAAATGAT---AATAA-----------TGCA-TCAACTCA----TTT----TAACCAATC------AGGAATCATAGCCATCTAACTAATGCTACGGTATGTGCCCT-GGTCAAAATTGAaacacgttcaacttaacgaatcttattat
gi|9 : CCGTCACTAGTCGACTGCTCCTTTGAACAATCCGTC
Alignments
lowQualScore : 3333333 11 111 2222222 22222 1 1111 111 11 3333333333 11111 44444444 22222 1111 333333 111 44444444444 1111 111111 111 1 111111 1
lowQualScore : 3 5555555 8 999 5 3 00 8 0 444 1 0 6 1 6 6 1111111 6 3 33333 0 5 0 1 5 4 4 55 777 00 0 5 2222 8 111 0 11 7777777777 3 2 8 77777 44444444 6 00000 3 7777 1 1 5 1 0 0 0 0 44 0 8 22 1 8 1 77 111111 1 111 88888888888 1 6 4444 999999 5 99 99 6 6 1 0 777 1 1 0 3 1 000000 2 0 0 1 1 0 2 3 3 1 0
lowQualScore : . ....... . ... . . .. . . ... . . . . . . ....... . . ..... . . . . . . . .. ... .. . . .... . ... . .. .......... . . . ..... ........ . ..... . .... . . . . . . . . .. . . .. . . . .. ...... . ... ........... . . .... ...... . .. .. . . . . ... . . . . . ...... . . . . . . . . . . .
lowQualScore : 2 2222222 0 444 6 2 66 0 8 000 4 8 7 0 7 7 7777777 7 3 33333 7 7 1 0 0 4 0 55 000 88 3 0 1111 0 888 8 00 8888888888 2 5 0 66666 66666666 0 00000 8 0000 4 0 6 0 8 8 6 8 66 8 0 22 0 0 4 44 000000 0 777 22222222222 0 7 2222 222222 2 22 22 7 7 0 2 555 2 2 0 2 0 333333 5 0 8 0 2 2 5 5 2 0 8
consensus : CCGTCACTAGTCGACTGCTCCTTTGAACAATCCGTCGCAGAGATCCCTTGTTAAAAGTAGAATTAAGCATGGCAAATAT-GAA-CCTCTT-TATTAAATGT-TAATATTCAGTTTAGTGAAGT-TTATACATATCCACTTAT---TCGGGGATCTTCGCCGATTATCCTTAGTCAGTCCGGATTAAATTGCCGTCATCTTGGAGCTATTTTCCG-TACATNTTACTTTTTT-AATGCATTTTTTT-ATTGATAATTATTCTTTT-------TATAATGGTTCATACAATAAGCATAGCGCGGACTCAAAAA-GCAATTCAGATAAAAGATGGTTTTATATCCGTTCTAATACCAATGGTATCGTAACTTTCTTTTGTAGTGAANAAGATACAGTTGAGGGTTTCTATTCAGGCGGTCCTTATTCGAATCCCTGTGAAAGTTTTTTATTGTTCATCTTTCAAGTAACATCACGTTANNCCTATCATCACTTT-CTCTTATCAAAACAGATTCTTCTTCTGGTATGTCCTCTTGTATCTCTGAAAGNTGACGGATATTTAAATTTCCGTTGATGACAAG-TTTTGAATAG-TCGAAT-ACCACAGC--A---GTGGTTTAGTGGTAGAGCATCCGACTCACATGCAGAAGGAGAAACGTATGTAGAGTAAAGA----AACTCTTTTTGAAAATGA-TACTGATTAACACGTGCTAAAATAGTGTAGATGTTGTTGGAACGTTACTGAATTTTC--TTGAATTTGAAAGCAAACTTAAAG--GTTAAACTCTAATTTTACGTAC----AC----TGTATAATGGTTTAAGTATTGTTTGACCCAATTCCCTTACAATAGCTGTTGATTGTCAATC-AATCTTTCAGAATCAACTTAGTTA----AAAACAN-----TCTTAAA-----AAATGAAT----ACTTTATGCCTGTTAAGTTGGGTTGAATGCCACCACATATTCTCTGAAGCACGTTTGTTAACATTTTTTTTAAATATGCAACATTTCCCTGACTGCCATAATTGTACCAAAATATAACCGATACGGTTATTCAAGATTTTATTTT-CTTTCTTATCTA-ATATTGTAATTTC------ATTAAAANTAAT---AACAA----AA--T-ATGCA-TCCAATCGGCATTTT----TGATCGATC------AGAAATCACAGCCATCTAG--AA--CTAC-GCAAGTTCCCT-TGTCAAAATTGATTGGTTCACGCACTGCCTCTATTTANTGGAGTTTCACTTAAAGA---AAAATCAAAGTGTTCGATCAACTTAAATGGGT-GTTACATCNAGACAATGCCTGTATCAAACATCTGTCTCACCTATGCACCTGTCGAAAATATATCTATGTGATGGAATCAAGATCTTAGAAATCGA-GGGCTGTTCGGTTGATGTTGATATTACTCGATAGAGCAGTTGTTCGCGCTNGATTCTCTTTCCGAAGGTCGTTGTTCAATTCTCCAGCGGGAAAACATTTTTATGTCGCTTTATATTTATAGTAGTATTAAATTCAAACAAATCGAGCTAGGCATATTTATGATGATTTGACCTATGACATTGTGTGGAAAGGTCTAGAATTAAAATATCATAAAGNGCAAGAGCAGAACAATACCGATTAGAAACTCGAG
Reference ( family-2801 ) : CCGTCACTAGTCGACTGCTCCTTTGAACAATCCGTCGCAGAGATCCCTTGTTAAAAGTAGAATTAAGCATGGCAAATAT-GAA-CCTCTT-TATTAAATGT-TAATATTCAGTTTAGTGAAGT-TTATACATATCCACTTAT---TCGGGGATCTTCGCCGATTATCCTTAGTCAGTCCGGATTAAATTGCCGTCATCTTGGAGCTATTTTCCG-TACATNTTACTTTTTT-AATGCATTTTTTT-ATTGATAATTATTCTTTT-------TATAATGGTTCATACAATAAGCATAGCGCGGACTCAAAAA-GCAATTCAGATAAAAGATGGTTTTATATCCGTTCTAATACCAATGGTATCGTAACTTTCTTTTGTAGTGAANAAGATACAGTTGAGGGTTTCTATTCAGGCGGTCCTTATTCGAATCCCTGTGAAAGTTTTTTATTGTTCATCTTTCAAGTAACATCACGTTANNCCTATCATCACTTT-CTCTTATCAAAACAGATTCTTCTTCTGGTATGTCCTCTTGTATCTCTGAAAGNTGACGGATATTTAAATTTCCGTTGATGACAAG-TTTTGAATAG-TCGAAT-ACCACAGC--A---GTGGTTTAGTGGTAGAGCATCCGACTCACATGCAGAAGGAGAAACGTATGTAGAGTAAAGA----AACTCTTTTTGAAAATGA-TACTGATTAACACGTGCTAAAATAGTGTAGATGTTGTTGGAACGTTACTGAATTTTC--TTGAATTTGAAAGCAAACTTAAAG--GTTAAACTCTAATTTTACGTAC----AC----TGTATAATGGTTTAAGTATTGTTTGACCCAATTCCCTTACAATAGCTGTTGATTGTCAATC-AATCTTTCAGAATCAACTTAGTTA----AAAACAN-----TCTTAAA-----AAATGAAT----ACTTTATGCCTGTTAAGTTGGGTTGAATGCCACCACATATTCTCTGAAGCACGTTTGTTAACATTTTTTTTAAATATGCAACATTTCCCTGACTGCCATAATTGTACCAAAATATAACCGATACGGTTATTCAAGATTTTATTTT-CTTTCTTATCTA-ATATTGTAATTTC------ATTAAAANTAAT---AACAA----AA--T-ATGCA-TCCAATCGGCATTTT----TGATCGATC------AGAAATCACAGCCATCTAG--AA--CTAC-GCAAGTTCCCT-TGTCAAAATTGATTGGTTCACGCACTGCCTCTATTTANTGGAGTTTCACTTAAAGA---AAAATCAAAGTGTTCGATCAACTTAAATGGGT-GTTACATCNAGACAATGCCTGTATCAAACATCTGTCTCACCTATGCACCTGTCGAAAATATATCTATGTGATGGAATCAAGATCTTAGAAATCGA-GGGCTGTTCGGTTGATGTTGATATTACTCGATAGAGCAGTTGTTCGCGCTNGATTCTCTTTCCGAAGGTCGTTGTTCAATTCTCCAGCGGGAAAACATTTTTATGTCGCTTTATATTTATAGTAGTATTAAATTCAAACAAATCGAGCTAGGCATATTTATGATGATTTGACCTATGACATTGTGTGGAAAGGTCTAGAATTAAAATATCATAAAGNGCAAGAGCAGAACAATACCGATTAGAAACTCGAG
gi|1 : CCGTCACTAGTCGACTGCAACTTTGAATAATCCGTCGTAGAGATCCCTTGTTAAAAGTAGAATTAAGCATGGCA----------------------AATAT---ACATGCA--------AAGT-TTATACATATCCATTTAT---TCGGGGATTTTCGTCGATTATCCTTAGACAATCCGGATTGAATTGCCGTCATCTTGGAGCTATTTTCGG-TACATTTTACTTTTTT-AATACTTTTTTTT-ATTAACAATTATTCTTTG-------TATTATGGTTCATACAATAAGCACAGCGCGAACTCAAAAA-GCAAATCAGATAAAGGATGGTTTTATATCCGTTCTAATACCAATTGTATCGTAACTTTCTTTCGTAGCGAAAAAGATACAGTTGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATATCATCCCCTT-CTCTTATCAAACCAG--TCTTCTTCTGATATGTTCTCTTGTATCTCTGGAAGTTGATGAATATTCAAATTTCCGTTGATGACAAG-TTTTGAATAG-TCAAAT-ACCACAGC--A---GTGGTTTAGTGGTAGAGCATCCGACTCACATGAAGAAGATAAAAAGTATGTAGAGTAAAGA----AACTCCTTTTGAAAATAA-TACTGATTAAAACGTGCTAAAATAGTGTAGATGTTGTTGGAACCTTACTGAATTTTC--TTGAATTTGAAAGCAAACTAAAAAATGTTAAACTCTAATTTTACGAAC----AC----TGTATAATGGTTTAACAATTGTTTGATCTAATTCCCTTATTTTAGCTGTTGATTGTCAATC-AATCTTTCAGAACCAACTTAGTTC----AAAA-AC-----TCTT-AA-----AAGTGAAT----ACCTTATGCTTGTTATGTTGGGTTGAATGTCATCACATATTCTCTGAAGCACGGTTGTAAACATTTTTTTAAAATATGCAACATTTTCCTGACTGCCATAATTGTACCAAAATATAACCGATACGGTTATTCAAGATTTTATTTTATTTTTTTATCTA-ATATTGTATTTTC------ATTAAAATTAAT---AACAA----AAT-T-TTTTA-TCCAATCGGCATTTT----TGATCGATC------AGAAAACACAGCCATCTAG--AA--CTAC-GCAAGTTCCCT-TTTCAAAGTTGATTGGCTCACGCACTGCCTCTATTTACTGGAGTTTCACTTAAAGA---AAAACCAAAATGTTCGATCAGCTTAAATGGGTAGTT-CATCCAGACAATGCCTGTATCAAACATCTGTCCCACCTATGCAC---------ATATATCTATGTGATGGAATCAAGATCTTAGAAATCGAGGGGCTGTTCGGTTGATGTAAATATTACTCGAAAGAGCAGTTGTTCGCGCTTGATTCTCTTTCCGAAGGTCGTTGTT--------CAGCGGGAAAACATTTTTATGTCGCTTTATATCTATAATAGTATTAAATTCAAATAAATCGAGTTAGGCATATTTATGATGATTTGACCTATGACATTGTGTGGAAAGGTCTAGAATTAAAATATC---AAGCGCAGGACCAGAACAATACCGATTAGAAACTCGAG
gi|10 : CCGTCACTAGTCGACTGCTCCTTTGAACAATCCGTC
gi|11 : nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnCCGTCACTAGTCGACTGCTCCTTTGAACAATCC
gi|12 : nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnT-CTCTTCACAAAACATATTCTTCTTCTGGTATGTGCGCTTATATCTCTGAAAGTTGACGAAGATTTAAATTTCCGTTGATGACAAG-TTTTGAATAG-TCGATT-TCTACNNN--N---NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGAGACGTATGTACAGC---------AACT-TTTTTGAAA
gi|13 : aAAAATATATCTATGTGAGGGAAT--------------TCGA-GGGCTGTTCGGGTGATGTTGATATTGATCGATAGAGCAGTTGTTCGTGCTTGATTCTCTTTCCGAAGGTCGTTGTTCATTTCTCCAGCGTGAAAACAGTTTTATGTTGCTTTggagcagataattactga
gi|14 : ttTTTGA-TAG-CTAAATCACCGCAGC--G---GTAGTCTAGGGGAAGAGCGTCCGACTCGCA
gi|15 : agATGTCTATTGATG--------TTGAATGGATTAAAT-ACCTCACCTGACCTGTGGATTAGTGGTAGAGTGTCCGCTTCACATcatcaaatacctggaaaatgttacgggaaactccct
gi|16 : atTAAAATATCATAAAGAGCAAGAGCAGAGCAGTGCTGA
gi|17 : -ACCACAGC--A---GTGGTTTAGTGGTAGAGCATCTGacacgttcaatttaacagaccctcattat
gi|18 : agCGTCACTAGTCGACTGCTCCTTTGAACAATCCGTcc
gi|2 : GCAGTTATCTTAAAGCTATTTTTCGGTTCTTTTTACTTTTT--AATGCATTTTTTTTATTAATAAGTATTCTTTT-------TAAAATGGTACATACAATAATCATAACTCGGACTCGTCAA-GCAAATCAGATTAAAGATGGTTTTATATCCGTTATAATACCAATGGTATCGTAACTTTCTTTTGTAGTGAACAAGATACAGTTGAGGGTTTCTATTCAGGCGGTCCTTATTCGAATCCCTGTGAAAGTTTTTTATTGTTCATCTTTCAAGTAACATCACGTT------------------CTCTTATCAAAACAGATTCTTCTTTTGGTATGTCCTGTTGTATCTCTGAAAGTTGGCGAATATTTAAATTTCCGTTGATGACAAG-TTTTAAATAG-TCGAAT-ACCACAGC--A---GTGGCTTAGTG-TAGATCATC--------ATGCAAAA--ATAAACGTACGTACATTAAAGA----AATTCTTTTTAAAAAAAAATACTAATTAACACGTGCTAAAATTGTGTAGACGTTGTTGGAACGTTACTGCATTGTC--TTGAATTTGAAAGCAAACTTATAG--GTTAGACTCTAATTTTAGGTAC----------TGTATAATG-TTTAAGTATTATTTGACCCAATTCCCTTACAATAGCTATTGATTGTCAATT-AAGCTTTCAGAATCAACTTAGTTA----AAAA--A-----TCTTAAA-----AAATGGAT----ACTTTATGCCTGTTAAGTTGGGTTGAATTCCACCACATATTCTCTGAAGCACGATTATTAACAATTTTTTTGAATATGCAACATTTCACTGACTGCCATAAGTGTACCAAAATATAACATATACGATTATTCAAGATTTTATTTT-CTTTCTAATCTATATATTTTAATTTC------ATTAAAATTAAT---AAAAA----AAATC-ATTAA-TGCAATCGGCTTTTC----TGATCAATC------AGAAATCAAAGCCATCTAG--AA--CTAT-CCAAGTTCCCT-TGTCAAAATTGATTGGTTCACGCACTGTCTCTATTAAGTGGAGTTTCACTTAAATA---ATTATCAAAGTGATCGATCCACTTAAATGGTC-GTTACATCAAGACAATGCCTGTATCAAACATCTGTTTCACCTATGCATCTGTTGAAAATATATCTATGTGATGTAATCAAGATCTTAGAAATGGA-AGAATGTTCGATTGATGTTGATATAACTCGATAAAGCAGATGGCAGCGCTGGATTCTCTTTCCAGAGATCGTTGTTCAATTCTCCAGCGGGAAAACATTTTTTTGTCGCTTTATATTAATAGTAATATTTAATTCAAACAAATCGAGCTAGGCATATTTATGATGATTTGACCTATGGCATTGTGTCGAAAGGTCTAGAATCAAAATATCATAAAGCGCAATTGCAGAACAATACTGATTAGAAACTCGAG
gi|3 : aaaCTTATGTTAAAGGTATCATAT-AAATTTA---AAGTATTATTTA-ATTTACGCATCAGTCGGGGATCTTCGCCGATTATCCATAGTCAG-----ATTAAATTGCCGTCATCTTGGAGCTATTTTCCG-TACATATTACTTTTTT-AATGCATTTTTTT-ATTGATAATTAATCTTTT-------CATAATGGTTGATACAATAAGCATAGCGCGGACTCAAAAA-ACAATTCAGATAAAAGATGGTTTTATATCCGTTCTAACACCAATGGTATCGTAACTTTCTTTTGTAGTGAAGAAGATACAGTTGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-CTCTTATCAAAACAGATTCTTCTTCTGGTATGTCCTCTTGTATCTCTGAAAGATGATGGATATTTAAATTTCCGTTGATGACAAG-TTTTGAATAG-TCGAAT-ACCACAGC--A---GTGGTTTAGTGGTAGAGTATCCGATTCACATTCAGAAGGAGAAA-GTATGTAGAGTAAAGA----AACTCTTTTTGAAAATGA-TACTGATTAACACGCGCTAAAATAGTGTAGATGTTGTTGGAACGTTATTGAATTTTCCGTTGAATTTGAAAGCAAACTTAAAG--GTTAAACTCTAATTTTACGTAC----ACTTATTGTATAATGGTTTAAGTATTGTTTGACCTAATTCCCTTACAATAGCTGTTGATTGTTAATC-AATCTTTCAGAATCAACTTAGTTA----AAAA-AA-----TGTTAAA-----AAATG---------------------AAGTTAGCTTGAATGCCACCAC--ATTCTCTGAAGCTCGTTTGTTAACATTTTTTTTAAATATGCAACAGTTCCCTGACTGCCATAATTGTACCAAAATATAACCGATACTATTATTCAAGATTTTATTTT-CTTTTTTATCTA-AAAAAGTTATTTCATAGTAATTAATAAAAAT---AACAA----AA----ATGCA-TCCAATCGGCATTTT----TGATCGATC------AGAAATCACAGCCATCTGG--AA--CTAC-GCAAGTTCCCCATGTCAAAATTGATTGGTTCACGCACTCTCTCTATTTAGTGGAGTTTCACTTAAAGA---AAAATCAAAGTGCTCGATCAACTTAAATGGGT-GTTAGGTCCAGAAAATGCCTGTATCAAACATCGGTCTCaacacgttcaacttaacgactctcaatat
gi|4 : aaagtagaaatgaagattaaaggtaatggaacatgtttagactaattataCCGTCACAGAGATTCCTTGTTAAAAGTAGAATTAAGCATGGTAAATATCGAG---TTTT-TATTAGATGT-TAATATTCAGTTTATTGAAGT-TTATACATATCCACTTAT---TCGGGGATCTTCACCATTTATATTTAATCAGTCCGGATTAAATTGCAGTCATCTTGGAGCTTTTTTCGA-TACATTTTACTTTTTTTAATGCATTCTTTT-ATTAATAATCATTCTTTTAATATTTTATAATGGTTCATGCAATAAGTATAGCTCGGACTCATAAA-GAAATTCAGTTAAAAGATGATTTTATATCTGTTCTAATAGCAATGGTATCGTAACTTTCTTTTGTAATGAAGAAGATACAATTGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACAC-TATCATCACTTTTCTCTTATCAAAATAGGTTCTTCTTCTGGTATGTACTCTTGTATCTCTGAAAGTTGACAAATATTTATATTTCCGTTGATGACAAG-TTTTGAATAG-TCGAAT-ACCACAAC--A---GTGGTATAGTGGTAGAGCAAACGGCTAACATGTACAAGGAGAAACATATGTAGAGTAAAGACAGAAACTCTTTTTGAAAATGA-TACTGATTAACACGTGCTAAAGTAGTGTAGATGTTGTGAGAACGTTCCTGAATTTTC--TTGAATTTGAAAGCAAACTTAAAG--GTTAGATTCTAATTTTACGTA-------------------------AATATTGTTTGACCCAATTCCAT-ACAATAGCTGTTGATTGTCCATT-AATCTTTCAGAATCAACTTAGTTC----AAAACA------TCTTTAA-----AAATGAAT----ACTTTATGACTGCTAAGTTAGATTGAATGCCACCACATATTCTCTGAAGCACGTTTGTTAACCTTTTTTTTAAATATGCAACATTTCTCTGACTGCCATAATTGTAACAAAATATAACCGATACAGTTATTCAAGATTTTATTTT-CTTTCCTATCTA-ATATTGTTATTTC------ATTAAAATTAATAAAAACAAAAACAA--TAATGCA-TCCAATCGGCATTTT----TGATCGATC------ATAAATCACCGCCATCCAG--AA--CAAC-GCAAGTTCCCT-TGTCAAAATTGATTGGTTCACGCACTGCCTCTAT
gi|5 : ggTAAAAGTAGAATTAAGCATGGCAAATAT-GAAGCCTCTT-TATTAAATGT-TAAAATTCAGTTTAGTGAAGT-TTAAACATATCCACTTAT---TCGGGGATCTTCGCCGATTATCCATAGTCAGTCCGGATTAAATTGCCGTCATCTTGGAGCTATTTTCCG-TACATATTACTTTTTT-AATGCATTTTTTT-ATTGATAATTATTCTTTT-------TATAATGGTTCATACAATAAGCATAGCGCGGACTCAAAAA-GCAATTCAGATAGAAGATGGTTTTATATCCGTTCTAATACCAATGGTATCGTAACTTTCTTTTGTAGTCAACAAGATACAGTTGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACTCTATCATCACTTT-CTCATATCAAAACAGATTCTTCTTCTGGTATGTCCTCTTGTATCTCTGAAAGATGATGGATATTTAAATTTCCGTTGATGACAAG-TTTTGAATAG-TCGNNN-NNNNNNNN--N---NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGAAA-ATATGTAGAGTAAAGA----AACTCTTTTTGAAAATGA-TACTGATTAACACGTGCTGAAATAGTGAAGATGTTGTTGGAACGTTATTGAATTTTC---CG---TTGAAAGCAAACGTAAAG--GTTAAACT-TATTTTTTCGTACAATTAT----TGTATAATGGTTTAAGTATTGTATGACCCAATTCCCTTACAAAAGC
gi|6 : gaCGTCACTAGTCGACTCCTCCTTTGAACAACCCGTCGCAGAGATCCCTTGTTAAAAGTAGAATGAAGCATGGCAAATAT-GAATCCTCTT-TATTAAATGT-TAATATTCAGTTTAGTGAAGT-TTATACATATCCACTTAT---TCGGAGATCTTCGCCGATTATCCTTAGTCAGTCCGGATTAAATTGCCGTCATCTTGAAGCTATTTTCCG-TACCTATTAC-TTTTT-AATACCTTTTTTT-ATTGATAATTATACTTTT-------TATAATGGTTCATACAATAAGCATAGCGCGGACTCAAAAATGCAATTCAGATAAAAGATGGTTTTATATCCGTTCTAATACCAATGGTATCGTGACTTTCTTTTGTAGTG---AAGATACAGTTGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTATCATCACTTT-CTCTTATTAAAACAGATTCTTCTTCTGGTATGTCCTTCTGTATCTCTGAAAGATGATGGATATTTAAATTTCCGTTGATGACCAGTTTTTGAATAG-TCGAAT-ACCACAGC--A---GTTGTTTACTGGTAAAGTATCCGATTCACATGCAGAAGGAGAAA-GTATGTAGAGTAAAGA----AACTCTTTTT
gi|7 : TGAAAGTAAT---AACA---------T-TTGAAATCGAAATAGAATTTTGACCTGGTTGCCCTTCCATAGAAATCA--GCCATCTAG--AA--ATAC-GCAAGTTCCCC-TGTCAAAATTGATTGGTTCACGCACTGCCTCTATTTACAGGAGTTTCACTTAAAAAGAAAAAAACAAAGTGTTCGATCAACTTAAATGGGT-ATTACATCGAGACAGTGCCTGTATCAAACATCTATCTCACCTATGCACCTGTCAAAAATATATCTTTGTGATGGAATCAAGATCTTAGAAATCGA-GGACTGTTTGGTTGATGTTGATATTACTCGATAGCGCAGTTACTCGCGCTAGATTCCCTTACCGTAGTTCGTTGTTCAATTCTCCAGCGGGAAAACATTTTAATGTCGCTTTATATTTATAGTAGTATTAAATTCAAACAAATCGAGCTAGGCATATGTATGATGATTTGACCTATGACATTGTGTGGAAAGGTCTAGAATTAAAATATCATAAAGAGCAAGAGCAGAACGCAACCGATTAGAAACTCGAG
gi|8 : C----TGTATAA-GGTTTAAGTCTTATTTGATTCCATTTTCTTTCCATAGCTAATCAGT-TTAACCTAATCTTTTAGAACCAGCTTAGTTACAACAAAACACAAACATCGTAAATAGGTAACTCAATTGGAGCTTTATGCTTGTATATTTGGGTTGGATACCACCACCTATTTTCTGAAACACTTTTGTTAACATTTATTTTAT-TATGCAACATTTCC-TGAC-----------TGCCA-----------------TTATTCAAG----TATTTT-TTT--------A-ACAATTTA--TTCG-----AATAAAAATGAT---AATAA-----------TGCA-TCAACTCA----TTT----TAACCAATC------AGGAATCATAGCCATCTAACTAATGCTACGGTATGTGCCCT-GGTCAAAATTGAaacacgttcaacttaacgaatcttattat
gi|9 : CCGTCACTAGTCGACTGCTCCTTTGAACAATCCGTC
blockSeqs : A GAAGCC A ATC T A TT A CAG A G T T T AATATTT T C NNNNN T T T A C TG CCT C CAGA A CGT . ACTTAT T G T ACAAC CACAAACA A TAGGT G TGGA C T A A GA . TC A T T AA ATAGTA T AAA AAACAATAA A A GACC TTCCAT A CT TG G A G GAA T A . A A CTGTTG C . T A C T A A
blockSeqs : A GAATCC . TA T G GT . . T . A . . . . G NACTC . T . . . . . C . . T . AATTAT T G . A AA A . A . C T A T TA . TT T . A TA G A . AAATCA C . . . C . . . . G . T C . A C CTGTCA C . G G C A A C
blockSeqs : A CGAG . TA T G GT . . A . T . . . . G NNNNC . A . . . . . C . . T . . T G . A CA T . A . T A C T AG . TC T . T TA . T . AAA C . . . C . . . . C . A T . A G . . A T C A A A
blockSeqs : . TA . G . . . T . A . . . . C ACAC . T . . . . . . . . . . . . . . C A A . . . . . . T . . . . . A A . G . TT A . . . T . . . .
blockSeqs : . A . . . . . . . A . . . . . . . . . A . . C . . . . . . . .
blockSeqs : . A . . . . . . .
blockSeqs : . . . . .
blockSeqs : . . . .
blockSeqs : . . .
blockSeqCons : TA* GT ** ********** AATA*******
originalCons : CCGTCACTAGTCGACTGCTCCTTTGAACAATCCGTCGCAGAGATCCCTTGTTAAAAGTAGAATTAAGCATGGCAAATAT-GAA-CCTCTT-TATTAAATGT-TAATATTCAGTTTAGTGAAGT-TTATACATATCCACTTAT---TCGGGGATCTTCGCCGATTATCCTTAGTCAGTCCGGATTAAATTGCCGTCATCTTGGAGCTATTTTCCG-TACATNTTACTTTTTT-AATGCATTTTTTT-ATTGATAATTATTCTTTT-------TATAATGGTTCATACAATAAGCATAGCGCGGACTCAAAAA-GCAATTCAGATAAAAGATGGTTTTATATCCGTTCTAATACCAATGGTATCGTAACTTTCTTTTGTAGTGAANAAGATACAGTTGAGGGTTTCTATTCAGGCGGTCCTTATTCGAATCCCTGTGAAAGTTTTTTATTGTTCATCTTTCAAGTAACATCACGTTANNCCTATCATCACTTT-CTCTTATCAAAACAGATTCTTCTTCTGGTATGTCCTCTTGTATCTCTGAAAGNTGACGGATATTTAAATTTCCGTTGATGACAAG-TTTTGAATAG-TCGAAT-ACCACAGC--A---GTGGTTTAGTGGTAGAGCATCCGACTCACATGCAGAAGGAGAAACGTATGTAGAGTAAAGA----AACTCTTTTTGAAAATGA-TACTGATTAACACGTGCTAAAATAGTGTAGATGTTGTTGGAACGTTACTGAATTTTC--TTGAATTTGAAAGCAAACTTAAAG--GTTAAACTCTAATTTTACGTAC----AC----TGTATAATGGTTTAAGTATTGTTTGACCCAATTCCCTTACAATAGCTGTTGATTGTCAATC-AATCTTTCAGAATCAACTTAGTTA----AAAACAN-----TCTTAAA-----AAATGAAT----ACTTTATGCCTGTTAAGTTGGGTTGAATGCCACCACATATTCTCTGAAGCACGTTTGTTAACATTTTTTTTAAATATGCAACATTTCCCTGACTGCCATAATTGTACCAAAATATAACCGATACGGTTATTCAAGATTTTATTTT-CTTTCTTATCTA-ATATTGTAATTTC------ATTAAAANTAAT---AACAA----AA--T-ATGCA-TCCAATCGGCATTTT----TGATCGATC------AGAAATCACAGCCATCTAG--AA--CTAC-GCAAGTTCCCT-TGTCAAAATTGATTGGTTCACGCACTGCCTCTATTTANTGGAGTTTCACTTAAAGA---AAAATCAAAGTGTTCGATCAACTTAAATGGGT-GTTACATCNAGACAATGCCTGTATCAAACATCTGTCTCACCTATGCACCTGTCGAAAATATATCTATGTGATGGAATCAAGATCTTAGAAATCGA-GGGCTGTTCGGTTGATGTTGATATTACTCGATAGAGCAGTTGTTCGCGCTNGATTCTCTTTCCGAAGGTCGTTGTTCAATTCTCCAGCGGGAAAACATTTTTATGTCGCTTTATATTTATAGTAGTATTAAATTCAAACAAATCGAGCTAGGCATATTTATGATGATTTGACCTATGACATTGTGTGGAAAGGTCTAGAATTAAAATATCATAAAGNGCAAGAGCAGAACAATACCGATTAGAAACTCGAG
finalCons : CCGTCACTAGTCGACTGCTCCTTTGAACAATCCGTCGCAGAGATCCCTTGTTAAAAGTAGAATTAAGCATGGCAAATAT-GAA-CCTCTT-TATTAAATGTTA-ATATTCAGTTTAGTGAAGT-TTATACATATCCACTTAT---TCGGGGATCTTCGCCGATTATCCTTAGTCAGTCCGGATTAAATTGCCGTCATCTTGGAGCTATTTTCCG-TACATNTTACTTTTTT-AATGCATTTTTTT-ATTGATAATTATTCTTTT-------TATAATGGTTCATACAATAAGCATAGCGCGGACTCAAAAA-GCAATTCAGATAAAAGATGGTTTTATATCCGTTCTAATACCAATGGTATCGTAACTTTCTTTTGTAGTGAANAAGATACAGTTGAGGGTTTCTATTCAGGCGGTCCTTATTCGAATCCCTGTGAAAGTTTTTTATTGTTCATCTTTCAAGTAACATCACGTTANNCCTATCATCACTTT-CTCTTATCAAAACAGATTCTTCTTCTGGTATGTCCTCTTGTATCTCTGAAAGNTGACGGATATTTAAATTTCCGTTGATGACAAG-TTTTGAATAG-TCGAAT-ACCACAGC--A---GTGGTTTAGTGGTAGAGCATCCGACTCACATGCAGAAGGAGAAACGTATGTAGAGTAAAGA----AACTCTTTTTGAAAATGA-TACTGATTAACACGTGCTAAAATAGTGTAGATGTTGTTGGAACGTTACTGAATTTTC--TTGAATTTGAAAGCAAACTTAAAG--GTTAAACTCTAATTTTACGTAC----------TGTATAATGGTTTAAGTATTGTTTGACCCAATTCCCTTACAATAGCTGTTGATTGTCAATC-AATCTTTCAGAATCAACTTAGTTA----AAAACAN-----TCTTAAA-----AAATGAAT----ACTTTATGCCTGTTAAGTTGGGTTGAATGCCACCACATATTCTCTGAAGCACGTTTGTTAACATTTTTTTTAAATATGCAACATTTCCCTGACTGCCATAATTGTACCAAAATATAACCGATACGGTTATTCAAGATTTTATTTT-CTTTCTTATCTA-ATATTGTAATTTC------ATTAAAANTAAT---AACAAAATA-------TGCA-TCCAATCGGCATTTT----TGATCGATC------AGAAATCACAGCCATCTAG--AA--CTAC-GCAAGTTCCCT-TGTCAAAATTGATTGGTTCACGCACTGCCTCTATTTANTGGAGTTTCACTTAAAGA---AAAATCAAAGTGTTCGATCAACTTAAATGGGT-GTTACATCNAGACAATGCCTGTATCAAACATCTGTCTCACCTATGCACCTGTCGAAAATATATCTATGTGATGGAATCAAGATCTTAGAAATCGA-GGGCTGTTCGGTTGATGTTGATATTACTCGATAGAGCAGTTGTTCGCGCTNGATTCTCTTTCCGAAGGTCGTTGTTCAATTCTCCAGCGGGAAAACATTTTTATGTCGCTTTATATTTATAGTAGTATTAAATTCAAACAAATCGAGCTAGGCATATTTATGATGATTTGACCTATGACATTGTGTGGAAAGGTCTAGAATTAAAATATCATAAAGNGCAAGAGCAGAACAATACCGATTAGAAACTCGAG
Alignments
lowQualScore : 3333333 11 111 2222222 22222 1 1111 111 11 11 333333 11111 333333333 22222 1111 333333 111 44444444444 1111 111111 111 1 111111 1
lowQualScore : 3 5555555 8 999 5 3 00 8 0 444 1 0 6 1 6 6 1111111 6 3 33333 0 5 0 1 5 4 4 55 777 00 0 5 2222 8 111 0 11 11 888888 55 8 77777 555555555 6 00000 3 7777 1 1 5 1 0 0 0 0 44 0 8 22 1 8 1 77 111111 1 111 88888888888 1 6 4444 999999 5 99 99 6 6 1 0 777 1 1 0 3 1 000000 2 0 0 1 1 0 2 3 3 1 0
lowQualScore : . ....... . ... . . .. . . ... . . . . . . ....... . . ..... . . . . . . . .. ... .. . . .... . ... . .. .. ...... .. . ..... ......... . ..... . .... . . . . . . . . .. . . .. . . . .. ...... . ... ........... . . .... ...... . .. .. . . . . ... . . . . . ...... . . . . . . . . . . .
lowQualScore : 2 2222222 0 444 6 2 66 0 8 000 4 8 7 0 7 7 7777777 7 3 33333 7 7 1 0 0 4 0 55 000 88 3 0 1111 0 888 8 00 00 333333 77 0 66666 666666666 0 00000 8 0000 4 0 6 0 8 8 6 8 66 8 0 22 0 0 4 44 000000 0 777 22222222222 0 7 2222 222222 2 22 22 7 7 0 2 555 2 2 0 2 0 333333 5 0 8 0 2 2 5 5 2 0 8
consensus : CCGTCACTAGTCGACTGCTCCTTTGAACAATCCGTCGCAGAGATCCCTTGTTAAAAGTAGAATTAAGCATGGCAAATAT-GAA-CCTCTT-TATTAAATGT-TAATATTCAGTTTAGTGAAGT-TTATACATATCCACTTAT---TCGGGGATCTTCGCCGATTATCCTTAGTCAGTCCGGATTAAATTGCCGTCATCTTGGAGCTATTTTCCG-TACATNTTACTTTTTT-AATGCATTTTTTT-ATTGATAATTATTCTTTT-------TATAATGGTTCATACAATAAGCATAGCGCGGACTCAAAAA-GCAATTCAGATAAAAGATGGTTTTATATCCGTTCTAATACCAATGGTATCGTAACTTTCTTTTGTAGTGAANAAGATACAGTTGAGGGTTTCTATTCAGGCGGTCCTTATTCGAATCCCTGTGAAAGTTTTTTATTGTTCATCTTTCAAGTAACATCACGTTANNCCTATCATCACTTT-CTCTTATCAAAACAGATTCTTCTTCTGGTATGTCCTCTTGTATCTCTGAAAGNTGACGGATATTTAAATTTCCGTTGATGACAAG-TTTTGAATAG-TCGAAT-ACCACAGC--A---GTGGTTTAGTGGTAGAGCATCCGACTCACATGCAGAAGGAGAAACGTATGTAGAGTAAAGA----AACTCTTTTTGAAAATGA-TACTGATTAACACGTGCTAAAATAGTGTAGATGTTGTTGGAACGTTACTGAATTTTC--TTGAATTTGAAAGCAAACTTAAAG--GTTAAACTCTAATTTTACG--TAC------TGTATAATGGTTTAAGTATTGTTTGACCCAATTCCCTTACAATAGCTGTTGATTGTCAATC-AATCTTTCAGAATCAACTTAGTTA----AAAACAN-----TCTTAAA-----AAATGAAT----ACTTTATGCCTGTTAAGTTGGGTTGAATGCCACCACATATTCTCTGAAGCACGTTTGTTAACATTTTTTTTAAATATGCAACATTTCCCTGACTGCCATAATTGTACCAAAATATAACCGATACGGTTATTCAAGATTTTATTTT-CTTTCTTATCTA-ATATTGTAATTTC------ATTAAAANTAAT---AACAA----AA--T-ATGCA-TCCAATCGGCATTTT----TGATCGATC------AGAAATCACAGCCATCTAG--AA--CTAC-GCAAGTTCCCT-TGTCAAAATTGATTGGTTCACGCACTGCCTCTATTTANTGGAGTTTCACTTAAAGA---AAAATCAAAGTGTTCGATCAACTTAAATGGGT-GTTACATCNAGACAATGCCTGTATCAAACATCTGTCTCACCTATGCACCTGTCGAAAATATATCTATGTGATGGAATCAAGATCTTAGAAATCGA-GGGCTGTTCGGTTGATGTTGATATTACTCGATAGAGCAGTTGTTCGCGCTNGATTCTCTTTCCGAAGGTCGTTGTTCAATTCTCCAGCGGGAAAACATTTTTATGTCGCTTTATATTTATAGTAGTATTAAATTCAAACAAATCGAGCTAGGCATATTTATGATGATTTGACCTATGACATTGTGTGGAAAGGTCTAGAATTAAAATATCATAAAGNGCAAGAGCAGAACAATACCGATTAGAAACTCGAG
Reference ( family-2801 ) : CCGTCACTAGTCGACTGCTCCTTTGAACAATCCGTCGCAGAGATCCCTTGTTAAAAGTAGAATTAAGCATGGCAAATAT-GAA-CCTCTT-TATTAAATGT-TAATATTCAGTTTAGTGAAGT-TTATACATATCCACTTAT---TCGGGGATCTTCGCCGATTATCCTTAGTCAGTCCGGATTAAATTGCCGTCATCTTGGAGCTATTTTCCG-TACATNTTACTTTTTT-AATGCATTTTTTT-ATTGATAATTATTCTTTT-------TATAATGGTTCATACAATAAGCATAGCGCGGACTCAAAAA-GCAATTCAGATAAAAGATGGTTTTATATCCGTTCTAATACCAATGGTATCGTAACTTTCTTTTGTAGTGAANAAGATACAGTTGAGGGTTTCTATTCAGGCGGTCCTTATTCGAATCCCTGTGAAAGTTTTTTATTGTTCATCTTTCAAGTAACATCACGTTANNCCTATCATCACTTT-CTCTTATCAAAACAGATTCTTCTTCTGGTATGTCCTCTTGTATCTCTGAAAGNTGACGGATATTTAAATTTCCGTTGATGACAAG-TTTTGAATAG-TCGAAT-ACCACAGC--A---GTGGTTTAGTGGTAGAGCATCCGACTCACATGCAGAAGGAGAAACGTATGTAGAGTAAAGA----AACTCTTTTTGAAAATGA-TACTGATTAACACGTGCTAAAATAGTGTAGATGTTGTTGGAACGTTACTGAATTTTC--TTGAATTTGAAAGCAAACTTAAAG--GTTAAACTCTAATTTTACG--TAC------TGTATAATGGTTTAAGTATTGTTTGACCCAATTCCCTTACAATAGCTGTTGATTGTCAATC-AATCTTTCAGAATCAACTTAGTTA----AAAACAN-----TCTTAAA-----AAATGAAT----ACTTTATGCCTGTTAAGTTGGGTTGAATGCCACCACATATTCTCTGAAGCACGTTTGTTAACATTTTTTTTAAATATGCAACATTTCCCTGACTGCCATAATTGTACCAAAATATAACCGATACGGTTATTCAAGATTTTATTTT-CTTTCTTATCTA-ATATTGTAATTTC------ATTAAAANTAAT---AACAA----AA--T-ATGCA-TCCAATCGGCATTTT----TGATCGATC------AGAAATCACAGCCATCTAG--AA--CTAC-GCAAGTTCCCT-TGTCAAAATTGATTGGTTCACGCACTGCCTCTATTTANTGGAGTTTCACTTAAAGA---AAAATCAAAGTGTTCGATCAACTTAAATGGGT-GTTACATCNAGACAATGCCTGTATCAAACATCTGTCTCACCTATGCACCTGTCGAAAATATATCTATGTGATGGAATCAAGATCTTAGAAATCGA-GGGCTGTTCGGTTGATGTTGATATTACTCGATAGAGCAGTTGTTCGCGCTNGATTCTCTTTCCGAAGGTCGTTGTTCAATTCTCCAGCGGGAAAACATTTTTATGTCGCTTTATATTTATAGTAGTATTAAATTCAAACAAATCGAGCTAGGCATATTTATGATGATTTGACCTATGACATTGTGTGGAAAGGTCTAGAATTAAAATATCATAAAGNGCAAGAGCAGAACAATACCGATTAGAAACTCGAG
gi|1 : CCGTCACTAGTCGACTGCAACTTTGAATAATCCGTCGTAGAGATCCCTTGTTAAAAGTAGAATTAAGCATGGCA----------------------AATAT---ACATGCA--------AAGT-TTATACATATCCATTTAT---TCGGGGATTTTCGTCGATTATCCTTAGACAATCCGGATTGAATTGCCGTCATCTTGGAGCTATTTTCGG-TACATTTTACTTTTTT-AATACTTTTTTTT-ATTAACAATTATTCTTTG-------TATTATGGTTCATACAATAAGCACAGCGCGAACTCAAAAA-GCAAATCAGATAAAGGATGGTTTTATATCCGTTCTAATACCAATTGTATCGTAACTTTCTTTCGTAGCGAAAAAGATACAGTTGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATATCATCCCCTT-CTCTTATCAAACCAG--TCTTCTTCTGATATGTTCTCTTGTATCTCTGGAAGTTGATGAATATTCAAATTTCCGTTGATGACAAG-TTTTGAATAG-TCAAAT-ACCACAGC--A---GTGGTTTAGTGGTAGAGCATCCGACTCACATGAAGAAGATAAAAAGTATGTAGAGTAAAGA----AACTCCTTTTGAAAATAA-TACTGATTAAAACGTGCTAAAATAGTGTAGATGTTGTTGGAACCTTACTGAATTTTC--TTGAATTTGAAAGCAAACTAAAAAATGTTAAACTCTAATTTTACGAACAC------TGTATAATGGTTTAACAATTGTTTGATCTAATTCCCTTATTTTAGCTGTTGATTGTCAATC-AATCTTTCAGAACCAACTTAGTTC----AAAA-AC-----TCTT-AA-----AAGTGAAT----ACCTTATGCTTGTTATGTTGGGTTGAATGTCATCACATATTCTCTGAAGCACGGTTGTAAACATTTTTTTAAAATATGCAACATTTTCCTGACTGCCATAATTGTACCAAAATATAACCGATACGGTTATTCAAGATTTTATTTTATTTTTTTATCTA-ATATTGTATTTTC------ATTAAAATTAAT---AACAA----AAT-T-TTTTA-TCCAATCGGCATTTT----TGATCGATC------AGAAAACACAGCCATCTAG--AA--CTAC-GCAAGTTCCCT-TTTCAAAGTTGATTGGCTCACGCACTGCCTCTATTTACTGGAGTTTCACTTAAAGA---AAAACCAAAATGTTCGATCAGCTTAAATGGGTAGTT-CATCCAGACAATGCCTGTATCAAACATCTGTCCCACCTATGCAC---------ATATATCTATGTGATGGAATCAAGATCTTAGAAATCGAGGGGCTGTTCGGTTGATGTAAATATTACTCGAAAGAGCAGTTGTTCGCGCTTGATTCTCTTTCCGAAGGTCGTTGTT--------CAGCGGGAAAACATTTTTATGTCGCTTTATATCTATAATAGTATTAAATTCAAATAAATCGAGTTAGGCATATTTATGATGATTTGACCTATGACATTGTGTGGAAAGGTCTAGAATTAAAATATC---AAGCGCAGGACCAGAACAATACCGATTAGAAACTCGAG
gi|10 : CCGTCACTAGTCGACTGCTCCTTTGAACAATCCGTC
gi|11 : nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnCCGTCACTAGTCGACTGCTCCTTTGAACAATCC
gi|12 : nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnT-CTCTTCACAAAACATATTCTTCTTCTGGTATGTGCGCTTATATCTCTGAAAGTTGACGAAGATTTAAATTTCCGTTGATGACAAG-TTTTGAATAG-TCGATT-TCTACNNN--N---NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGAGACGTATGTACAGC---------AACT-TTTTTGAAA
gi|13 : aAAAATATATCTATGTGAGGGAAT--------------TCGA-GGGCTGTTCGGGTGATGTTGATATTGATCGATAGAGCAGTTGTTCGTGCTTGATTCTCTTTCCGAAGGTCGTTGTTCATTTCTCCAGCGTGAAAACAGTTTTATGTTGCTTTggagcagataattactga
gi|14 : ttTTTGA-TAG-CTAAATCACCGCAGC--G---GTAGTCTAGGGGAAGAGCGTCCGACTCGCA
gi|15 : agATGTCTATTGATG--------TTGAATGGATTAAAT-ACCTCACCTGACCTGTGGATTAGTGGTAGAGTGTCCGCTTCACATcatcaaatacctggaaaatgttacgggaaactccct
gi|16 : atTAAAATATCATAAAGAGCAAGAGCAGAGCAGTGCTGA
gi|17 : -ACCACAGC--A---GTGGTTTAGTGGTAGAGCATCTGacacgttcaatttaacagaccctcattat
gi|18 : agCGTCACTAGTCGACTGCTCCTTTGAACAATCCGTcc
gi|2 : GCAGTTATCTTAAAGCTATTTTTCGGTTCTTTTTACTTTTT--AATGCATTTTTTTTATTAATAAGTATTCTTTT-------TAAAATGGTACATACAATAATCATAACTCGGACTCGTCAA-GCAAATCAGATTAAAGATGGTTTTATATCCGTTATAATACCAATGGTATCGTAACTTTCTTTTGTAGTGAACAAGATACAGTTGAGGGTTTCTATTCAGGCGGTCCTTATTCGAATCCCTGTGAAAGTTTTTTATTGTTCATCTTTCAAGTAACATCACGTT------------------CTCTTATCAAAACAGATTCTTCTTTTGGTATGTCCTGTTGTATCTCTGAAAGTTGGCGAATATTTAAATTTCCGTTGATGACAAG-TTTTAAATAG-TCGAAT-ACCACAGC--A---GTGGCTTAGTG-TAGATCATC--------ATGCAAAA--ATAAACGTACGTACATTAAAGA----AATTCTTTTTAAAAAAAAATACTAATTAACACGTGCTAAAATTGTGTAGACGTTGTTGGAACGTTACTGCATTGTC--TTGAATTTGAAAGCAAACTTATAG--GTTAGACTCTAATTTTAGG--TAC------TGTATAAT-GTTTAAGTATTATTTGACCCAATTCCCTTACAATAGCTATTGATTGTCAATT-AAGCTTTCAGAATCAACTTAGTTA----AAA--AA-----TCTTAAA-----AAATGGAT----ACTTTATGCCTGTTAAGTTGGGTTGAATTCCACCACATATTCTCTGAAGCACGATTATTAACAATTTTTTTGAATATGCAACATTTCACTGACTGCCATAAGTGTACCAAAATATAACATATACGATTATTCAAGATTTTATTTT-CTTTCTAATCTATATATTTTAATTTC------ATTAAAATTAAT---AAAAA----AAATC-ATTAA-TGCAATCGGCTTTTC----TGATCAATC------AGAAATCAAAGCCATCTAG--AA--CTAT-CCAAGTTCCCT-TGTCAAAATTGATTGGTTCACGCACTGTCTCTATTAAGTGGAGTTTCACTTAAATA---ATTATCAAAGTGATCGATCCACTTAAATGGTC-GTTACATCAAGACAATGCCTGTATCAAACATCTGTTTCACCTATGCATCTGTTGAAAATATATCTATGTGATGTAATCAAGATCTTAGAAATGGA-AGAATGTTCGATTGATGTTGATATAACTCGATAAAGCAGATGGCAGCGCTGGATTCTCTTTCCAGAGATCGTTGTTCAATTCTCCAGCGGGAAAACATTTTTTTGTCGCTTTATATTAATAGTAATATTTAATTCAAACAAATCGAGCTAGGCATATTTATGATGATTTGACCTATGGCATTGTGTCGAAAGGTCTAGAATCAAAATATCATAAAGCGCAATTGCAGAACAATACTGATTAGAAACTCGAG
gi|3 : aaaCTTATGTTAAAGGTATCATAT-AAATTTA---AAGTATTATTTA-ATTTACGCATCAGTCGGGGATCTTCGCCGATTATCCATAGTCAG-----ATTAAATTGCCGTCATCTTGGAGCTATTTTCCG-TACATATTACTTTTTT-AATGCATTTTTTT-ATTGATAATTAATCTTTT-------CATAATGGTTGATACAATAAGCATAGCGCGGACTCAAAAA-ACAATTCAGATAAAAGATGGTTTTATATCCGTTCTAACACCAATGGTATCGTAACTTTCTTTTGTAGTGAAGAAGATACAGTTGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-CTCTTATCAAAACAGATTCTTCTTCTGGTATGTCCTCTTGTATCTCTGAAAGATGATGGATATTTAAATTTCCGTTGATGACAAG-TTTTGAATAG-TCGAAT-ACCACAGC--A---GTGGTTTAGTGGTAGAGTATCCGATTCACATTCAGAAGGAGAAA-GTATGTAGAGTAAAGA----AACTCTTTTTGAAAATGA-TACTGATTAACACGCGCTAAAATAGTGTAGATGTTGTTGGAACGTTATTGAATTTTCCGTTGAATTTGAAAGCAAACTTAAAG--GTTAAACTCTAATTTTACG--TACACTTATTGTATAATGGTTTAAGTATTGTTTGACCTAATTCCCTTACAATAGCTGTTGATTGTTAATC-AATCTTTCAGAATCAACTTAGTTA----AAAA-AA-----TGTTAAA-----AAATG---------------------AAGTTAGCTTGAATGCCACCAC--ATTCTCTGAAGCTCGTTTGTTAACATTTTTTTTAAATATGCAACAGTTCCCTGACTGCCATAATTGTACCAAAATATAACCGATACTATTATTCAAGATTTTATTTT-CTTTTTTATCTA-AAAAAGTTATTTCATAGTAATTAATAAAAAT---AACAA----AA----ATGCA-TCCAATCGGCATTTT----TGATCGATC------AGAAATCACAGCCATCTGG--AA--CTAC-GCAAGTTCCCCATGTCAAAATTGATTGGTTCACGCACTCTCTCTATTTAGTGGAGTTTCACTTAAAGA---AAAATCAAAGTGCTCGATCAACTTAAATGGGT-GTTAGGTCCAGAAAATGCCTGTATCAAACATCGGTCTCaacacgttcaacttaacgactctcaatat
gi|4 : aaagtagaaatgaagattaaaggtaatggaacatgtttagactaattataCCGTCACAGAGATTCCTTGTTAAAAGTAGAATTAAGCATGGTAAATATCGAG---TTTT-TATTAGATGT-TAATATTCAGTTTATTGAAGT-TTATACATATCCACTTAT---TCGGGGATCTTCACCATTTATATTTAATCAGTCCGGATTAAATTGCAGTCATCTTGGAGCTTTTTTCGA-TACATTTTACTTTTTTTAATGCATTCTTTT-ATTAATAATCATTCTTTTAATATTTTATAATGGTTCATGCAATAAGTATAGCTCGGACTCATAAA-GAAATTCAGTTAAAAGATGATTTTATATCTGTTCTAATAGCAATGGTATCGTAACTTTCTTTTGTAATGAAGAAGATACAATTGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACAC-TATCATCACTTTTCTCTTATCAAAATAGGTTCTTCTTCTGGTATGTACTCTTGTATCTCTGAAAGTTGACAAATATTTATATTTCCGTTGATGACAAG-TTTTGAATAG-TCGAAT-ACCACAAC--A---GTGGTATAGTGGTAGAGCAAACGGCTAACATGTACAAGGAGAAACATATGTAGAGTAAAGACAGAAACTCTTTTTGAAAATGA-TACTGATTAACACGTGCTAAAGTAGTGTAGATGTTGTGAGAACGTTCCTGAATTTTC--TTGAATTTGAAAGCAAACTTAAAG--GTTAGATTCTAATTTTACG--TA---------------------AATATTGTTTGACCCAATTCCAT-ACAATAGCTGTTGATTGTCCATT-AATCTTTCAGAATCAACTTAGTTC----AAAACA------TCTTTAA-----AAATGAAT----ACTTTATGACTGCTAAGTTAGATTGAATGCCACCACATATTCTCTGAAGCACGTTTGTTAACCTTTTTTTTAAATATGCAACATTTCTCTGACTGCCATAATTGTAACAAAATATAACCGATACAGTTATTCAAGATTTTATTTT-CTTTCCTATCTA-ATATTGTTATTTC------ATTAAAATTAATAAAAACAAAAACAA--TAATGCA-TCCAATCGGCATTTT----TGATCGATC------ATAAATCACCGCCATCCAG--AA--CAAC-GCAAGTTCCCT-TGTCAAAATTGATTGGTTCACGCACTGCCTCTAT
gi|5 : ggTAAAAGTAGAATTAAGCATGGCAAATAT-GAAGCCTCTT-TATTAAATGT-TAAAATTCAGTTTAGTGAAGT-TTAAACATATCCACTTAT---TCGGGGATCTTCGCCGATTATCCATAGTCAGTCCGGATTAAATTGCCGTCATCTTGGAGCTATTTTCCG-TACATATTACTTTTTT-AATGCATTTTTTT-ATTGATAATTATTCTTTT-------TATAATGGTTCATACAATAAGCATAGCGCGGACTCAAAAA-GCAATTCAGATAGAAGATGGTTTTATATCCGTTCTAATACCAATGGTATCGTAACTTTCTTTTGTAGTCAACAAGATACAGTTGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACTCTATCATCACTTT-CTCATATCAAAACAGATTCTTCTTCTGGTATGTCCTCTTGTATCTCTGAAAGATGATGGATATTTAAATTTCCGTTGATGACAAG-TTTTGAATAG-TCGNNN-NNNNNNNN--N---NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGAAA-ATATGTAGAGTAAAGA----AACTCTTTTTGAAAATGA-TACTGATTAACACGTGCTGAAATAGTGAAGATGTTGTTGGAACGTTATTGAATTTTC---CG---TTGAAAGCAAACGTAAAG--GTTAAACT-TATTTTTTCG--TACAATTATTGTATAATGGTTTAAGTATTGTATGACCCAATTCCCTTACAAAAGC
gi|6 : gaCGTCACTAGTCGACTCCTCCTTTGAACAACCCGTCGCAGAGATCCCTTGTTAAAAGTAGAATGAAGCATGGCAAATAT-GAATCCTCTT-TATTAAATGT-TAATATTCAGTTTAGTGAAGT-TTATACATATCCACTTAT---TCGGAGATCTTCGCCGATTATCCTTAGTCAGTCCGGATTAAATTGCCGTCATCTTGAAGCTATTTTCCG-TACCTATTAC-TTTTT-AATACCTTTTTTT-ATTGATAATTATACTTTT-------TATAATGGTTCATACAATAAGCATAGCGCGGACTCAAAAATGCAATTCAGATAAAAGATGGTTTTATATCCGTTCTAATACCAATGGTATCGTGACTTTCTTTTGTAGTG---AAGATACAGTTGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTATCATCACTTT-CTCTTATTAAAACAGATTCTTCTTCTGGTATGTCCTTCTGTATCTCTGAAAGATGATGGATATTTAAATTTCCGTTGATGACCAGTTTTTGAATAG-TCGAAT-ACCACAGC--A---GTTGTTTACTGGTAAAGTATCCGATTCACATGCAGAAGGAGAAA-GTATGTAGAGTAAAGA----AACTCTTTTT
gi|7 : TGAAAGTAAT---AACA---------T-TTGAAATCGAAATAGAATTTTGACCTGGTTGCCCTTCCATAGAAATCA--GCCATCTAG--AA--ATAC-GCAAGTTCCCC-TGTCAAAATTGATTGGTTCACGCACTGCCTCTATTTACAGGAGTTTCACTTAAAAAGAAAAAAACAAAGTGTTCGATCAACTTAAATGGGT-ATTACATCGAGACAGTGCCTGTATCAAACATCTATCTCACCTATGCACCTGTCAAAAATATATCTTTGTGATGGAATCAAGATCTTAGAAATCGA-GGACTGTTTGGTTGATGTTGATATTACTCGATAGCGCAGTTACTCGCGCTAGATTCCCTTACCGTAGTTCGTTGTTCAATTCTCCAGCGGGAAAACATTTTAATGTCGCTTTATATTTATAGTAGTATTAAATTCAAACAAATCGAGCTAGGCATATGTATGATGATTTGACCTATGACATTGTGTGGAAAGGTCTAGAATTAAAATATCATAAAGAGCAAGAGCAGAACGCAACCGATTAGAAACTCGAG
gi|8 : C------TGTATAA-GGTTTAAGTCTTATTTGATTCCATTTTCTTTCCATAGCTAATCAGT-TTAACCTAATCTTTTAGAACCAGCTTAGTTACAACAAAACACAAACATCGTAAATAGGTAACTCAATTGGAGCTTTATGCTTGTATATTTGGGTTGGATACCACCACCTATTTTCTGAAACACTTTTGTTAACATTTATTTTAT-TATGCAACATTTCC-TGAC-----------TGCCA-----------------TTATTCAAG----TATTTT-TTT--------A-ACAATTTA--TTCG-----AATAAAAATGAT---AATAA-----------TGCA-TCAACTCA----TTT----TAACCAATC------AGGAATCATAGCCATCTAACTAATGCTACGGTATGTGCCCT-GGTCAAAATTGAaacacgttcaacttaacgaatcttattat
gi|9 : CCGTCACTAGTCGACTGCTCCTTTGAACAATCCGTC