lowQualScore : 1 1 2222222
lowQualScore : 5 5 2 777777 2222222 6
lowQualScore : . . . ...... ....... .
lowQualScore : 4 0 7 777777 3333333 0
consensus : TTTACTCCATATGCATTTTAACTGGACTCTTCCAAACTCAAAA-GCCACAC------ATAGTCAATTTCCATGAATAGAT--ACATTTTACCTAT
Reference ( gi|6 ) : TTTAATCCATATGGATTTTAACTGGACTCTTCCAAACTCAAAA-GCCACAC------ATAGTCAATTTCCATGAAAAGAA--ACGTTTTACCTAT
gi|1 : TTTATTCCATTTGTATTTTAACTGGACTCTTCCAAACTCAAAA-TCCACAC------AAAGTCAATTTCCATGAATAGAT--ACATTTTAACTAT
gi|11 : taacttTTTACTCCATATGCATTTTAACTTGACTTTTCCAAACTCAAAA-GCCACAC------ATAGTCAATTTCCAttatt
gi|8 : aactcTTTACTCCATATGCATTTTAACTGGACGCTTCCAAACTCAAAA-GTCACAC------TTAGTCAATTTCCATc
gi|12 : taactcTTTACTTCATATGCATTTTAACTGGACTTTTCCAAACTCAAAA-GTCACAC------ATAGTCAATTTtttaccta
gi|14 : cttaactcTTTATTCTATATGCATTTTAACTGGACTCTTCCAAACCCAAAA-GCCACAC------ATAGTCAAT
gi|2 : TTTACTCCATATGCATTTGAACCAGACTCTTATAAACTCAAAAAGCCATAA------ATAGTCAATTTCCATGCATAAAT--ACATTTTACCAAT
gi|3 : actcTTTACTCCATATGCATTT-AAGTAGACTCTTCCAAACTC-AAA-GCCATATGTACCGATAGTCATTTTCTGTGAATAGGT--ACATTTTACCTATttatt
gi|7 : TTTACTCCATATGCATTTTAAGTGAACTC-----------AAA-GTCATAC------ATAGTCAATTTCCATGAATTGGT--ACATTTTACCTATtta
gi|16 : taacccTTTACTTCATATACATTTTAAGTGGACTCTTCCAAAGTCatat
gi|17 : taacccTTTACTCCATATGCATTTTTACTGGACTCTT
gi|5 : ataactcTTACTCCATATGCATTTTTACTGAACTCCTCCAAACTGAAAA-GCCACAC------ATAGTCAATTTCCATGAATA-AATTACATTTTACCTAT
gi|19 : ttgTCCATATGCATTTTAACTGGAt
gi|4 : taactcttttcCATATGCATTTTAACTGGACTTTTCCAAACTCAAAA-GCCATAT------ATGGTCAATTTCAAT
gi|13 : taactactaGGACTCTTCCAAACTCAAAA-GCCAACC------ATAGTCAATTTCTATGAATAGAT--ACAatatcagtacatttatctatttatt
gi|18 : tnnnnnnnnnnTTCCAAAGTCAAAA-GCCACAC------ATAGTCAATTTCCATG
gi|10 : AAACTCAAAC-GCCACAC------ATAGTCAATTTCTTTGAACAGAT--TCATTTTACTTAT
gi|9 : tttaactctttacaccatatgtAAACTCAAAC-GCCACAC------ATAGTCAATTTCTTTGAACAGAT--TCATTTTACTTATttat
gi|15 : tttaactctttacaccatatgtACTCAAAA-GCCACAC------ATAGTCAATTTCCATGAATAGAT--ACATTTTACCTATttat
Alignments
lowQualScore : 2 777777 3
lowQualScore : . ...... .
lowQualScore : 5 222222 6
consensus : TTTACTCCATATGCATTTTAACTGGACTCTTCCAAACTCAAAA-GCCACAC------ATAGTCAATTTCCATGAATAGA-TACATTTTACCTAT
Reference ( family-2774 ) : TTTACTCCATATGCATTTTAACTGGACTCTTCCAAACTCAAAA-GCCACAC------ATAGTCAATTTCCATGAATAGA-TACATTTTACCTAT
gi|1 : TTTATTCCATTTGTATTTTAACTGGACTCTTCCAAACTCAAAA-TCCACAC------AAAGTCAATTTCCATGAATAGA-TACATTTTAACTAT
gi|10 : taacttAAACTCAAAC-GCCACAC------ATAGTCAATTTCTTTGAACAGA-TTCATTTTACTTATttatt
gi|11 : tttaactctttacaccatatgtTTTACTCCATATGCATTTTAACTTGACTTTTCCAAACTCAAAA-GCCACAC------ATAGTCAATTTCCAttat
gi|12 : aactcTTTACTTCATATGCATTTTAACTGGACTTTTCCAAACTCAAAA-GTCACAC------ATAGTCAATTTc
gi|13 : cttaactcGGACTCTTCCAAACTCAAAA-GCCAACC------ATAGTCAATTTCTATGAATAGA-TACAT
gi|14 : tnnnnnnnnnnTTTATTCTATATGCATTTTAACTGGACTCTTCCAAACCCAAAA-GCCACAC------ATAGTCAAT
gi|15 : ACTCAAAA-GCCACAC------ATAGTCAATTTCCATGAATAGA-TACATTTTACCTAT
gi|16 : tcTTTACTTCATATACATTTTAAGTGGACTCTTCCAAAGTCttatt
gi|17 : taacccTTTACTCCATATGCATTTTTACTGGACTCTT
gi|18 : ataactcTTCCAAAGTCAAAA-GCCACAC------ATAGTCAATTTCCATG
gi|19 : TTTTCTCCATATGCATTTTAACTGGA
gi|2 : taactcTTTACTCCATATGCATTTGAACCAGACTCTTATAAACTCAAAAAGCCATAA------ATAGTCAATTTCCATGCATAAA-TACATTTTACCAAT
gi|3 : actcTTTACTCCATATGCATTT-AAGTAGACTCTTCCAAACTCAAA--GCCATATGTACCGATAGTCATTTTCTGTGAATAGG-TACATTTTACCTATttatt
gi|4 : TACTACATATGCATTTTAACTGGACTTTTCCAAACTCAAAA-GCCATAT------ATGGTCAATTTCAATATATCAG-TACA-TTTATCTATtta
gi|5 : taacTTACTCCATATGCATTTTTACTGAACTCCTCCAAACTGAAAA-GCCACAC------ATAGTCAATTTCCATGAATAAATTACATTTTACCTATttatt
gi|6 : ttgTTTAATCCATATGGATTTTAACTGGACTCTTCCAAACTCAAAA-GCCACAC------ATAGTCAATTTCCATGAAAAGA-AACGTTTTACCTATt
gi|7 : TTTACTCCATATGCATTTTAAGTGAACTC-----------AAA-GTCATAC------ATAGTCAATTTCCATGAATTGG-TACATTTTACCTAT
gi|8 : taacccTTTACTCCATATGCATTTTAACTGGACGCTTCCAAACTCAAAA-GTCACAC------TTAGTCAATTTCCATatat
gi|9 : taactcAAACTCAAAC-GCCACAC------ATAGTCAATTTCTTTGAACAGA-TTCATTTTACTTATtttaccta
Alignments
lowQualScore : 2 777777 3
lowQualScore : . ...... .
lowQualScore : 5 222222 6
consensus : TTTACTCCATATGCATTTTAACTGGACTCTTCCAAACTCAAAA-GCCACAC------ATAGTCAATTTCCATGAATAGA-TACATTTTACCTAT
Reference ( family-2774 ) : TTTACTCCATATGCATTTTAACTGGACTCTTCCAAACTCAAAA-GCCACAC------ATAGTCAATTTCCATGAATAGA-TACATTTTACCTAT
gi|1 : TTTATTCCATTTGTATTTTAACTGGACTCTTCCAAACTCAAAA-TCCACAC------AAAGTCAATTTCCATGAATAGA-TACATTTTAACTAT
gi|10 : taacttAAACTCAAAC-GCCACAC------ATAGTCAATTTCTTTGAACAGA-TTCATTTTACTTATttatt
gi|11 : tttaactctttacaccatatgtTTTACTCCATATGCATTTTAACTTGACTTTTCCAAACTCAAAA-GCCACAC------ATAGTCAATTTCCAttat
gi|12 : aactcTTTACTTCATATGCATTTTAACTGGACTTTTCCAAACTCAAAA-GTCACAC------ATAGTCAATTTc
gi|13 : cttaactcGGACTCTTCCAAACTCAAAA-GCCAACC------ATAGTCAATTTCTATGAATAGA-TACAT
gi|14 : tnnnnnnnnnnTTTATTCTATATGCATTTTAACTGGACTCTTCCAAACCCAAAA-GCCACAC------ATAGTCAAT
gi|15 : ACTCAAAA-GCCACAC------ATAGTCAATTTCCATGAATAGA-TACATTTTACCTAT
gi|16 : tcTTTACTTCATATACATTTTAAGTGGACTCTTCCAAAGTCttatt
gi|17 : taacccTTTACTCCATATGCATTTTTACTGGACTCTT
gi|18 : ataactcTTCCAAAGTCAAAA-GCCACAC------ATAGTCAATTTCCATG
gi|19 : TTTTCTCCATATGCATTTTAACTGGA
gi|2 : taactcTTTACTCCATATGCATTTGAACCAGACTCTTATAAACTCAAAAAGCCATAA------ATAGTCAATTTCCATGCATAAA-TACATTTTACCAAT
gi|3 : actcTTTACTCCATATGCATTT-AAGTAGACTCTTCCAAACTCAAA--GCCATATGTACCGATAGTCATTTTCTGTGAATAGG-TACATTTTACCTATttatt
gi|4 : TACTACATATGCATTTTAACTGGACTTTTCCAAACTCAAAA-GCCATAT------ATGGTCAATTTCAATATATCAG-TACA-TTTATCTATtta
gi|5 : taacTTACTCCATATGCATTTTTACTGAACTCCTCCAAACTGAAAA-GCCACAC------ATAGTCAATTTCCATGAATAAATTACATTTTACCTATttatt
gi|6 : ttgTTTAATCCATATGGATTTTAACTGGACTCTTCCAAACTCAAAA-GCCACAC------ATAGTCAATTTCCATGAAAAGA-AACGTTTTACCTATt
gi|7 : TTTACTCCATATGCATTTTAAGTGAACTC-----------AAA-GTCATAC------ATAGTCAATTTCCATGAATTGG-TACATTTTACCTAT
gi|8 : taacccTTTACTCCATATGCATTTTAACTGGACGCTTCCAAACTCAAAA-GTCACAC------TTAGTCAATTTCCATatat
gi|9 : taactcAAACTCAAAC-GCCACAC------ATAGTCAATTTCTTTGAACAGA-TTCATTTTACTTATtttaccta
blockSeqs : A GTACCG T
blockSeqs : . . .
blockSeqs : . . .
blockSeqs : . . .
blockSeqs : . . .
blockSeqs : . . .
blockSeqs : . . .
blockSeqs : . . .
blockSeqs : . . .
blockSeqs : . . .
blockSeqs : . .
blockSeqs : . .
blockSeqs : . .
blockSeqs : . .
blockSeqs : . .
blockSeqCons :
originalCons : TTTACTCCATATGCATTTTAACTGGACTCTTCCAAACTCAAAA-GCCACAC------ATAGTCAATTTCCATGAATAGA-TACATTTTACCTAT
finalCons : TTTACTCCATATGCATTTTAACTGGACTCTTCCAAACTCAAAA-GCCACAC------ATAGTCAATTTCCATGAATAGA-TACATTTTACCTAT
Alignments
lowQualScore : 2 777777 3
lowQualScore : . ...... .
lowQualScore : 5 222222 6
consensus : TTTACTCCATATGCATTTTAACTGGACTCTTCCAAACTCAAAA-GCCACAC------ATAGTCAATTTCCATGAATAGA-TACATTTTACCTAT
Reference ( family-2774 ) : TTTACTCCATATGCATTTTAACTGGACTCTTCCAAACTCAAAA-GCCACAC------ATAGTCAATTTCCATGAATAGA-TACATTTTACCTAT
gi|1 : TTTATTCCATTTGTATTTTAACTGGACTCTTCCAAACTCAAAA-TCCACAC------AAAGTCAATTTCCATGAATAGA-TACATTTTAACTAT
gi|10 : taacttAAACTCAAAC-GCCACAC------ATAGTCAATTTCTTTGAACAGA-TTCATTTTACTTATttatt
gi|11 : tttaactctttacaccatatgtTTTACTCCATATGCATTTTAACTTGACTTTTCCAAACTCAAAA-GCCACAC------ATAGTCAATTTCCAttat
gi|12 : aactcTTTACTTCATATGCATTTTAACTGGACTTTTCCAAACTCAAAA-GTCACAC------ATAGTCAATTTc
gi|13 : cttaactcGGACTCTTCCAAACTCAAAA-GCCAACC------ATAGTCAATTTCTATGAATAGA-TACAT
gi|14 : tnnnnnnnnnnTTTATTCTATATGCATTTTAACTGGACTCTTCCAAACCCAAAA-GCCACAC------ATAGTCAAT
gi|15 : ACTCAAAA-GCCACAC------ATAGTCAATTTCCATGAATAGA-TACATTTTACCTAT
gi|16 : tcTTTACTTCATATACATTTTAAGTGGACTCTTCCAAAGTCttatt
gi|17 : taacccTTTACTCCATATGCATTTTTACTGGACTCTT
gi|18 : ataactcTTCCAAAGTCAAAA-GCCACAC------ATAGTCAATTTCCATG
gi|19 : TTTTCTCCATATGCATTTTAACTGGA
gi|2 : taactcTTTACTCCATATGCATTTGAACCAGACTCTTATAAACTCAAAAAGCCATAA------ATAGTCAATTTCCATGCATAAA-TACATTTTACCAAT
gi|3 : actcTTTACTCCATATGCATTT-AAGTAGACTCTTCCAAACTCAAA--GCCATATGTACCGATAGTCATTTTCTGTGAATAGG-TACATTTTACCTATttatt
gi|4 : TACTACATATGCATTTTAACTGGACTTTTCCAAACTCAAAA-GCCATAT------ATGGTCAATTTCAATATATCAG-TACA-TTTATCTATtta
gi|5 : taacTTACTCCATATGCATTTTTACTGAACTCCTCCAAACTGAAAA-GCCACAC------ATAGTCAATTTCCATGAATAAATTACATTTTACCTATttatt
gi|6 : ttgTTTAATCCATATGGATTTTAACTGGACTCTTCCAAACTCAAAA-GCCACAC------ATAGTCAATTTCCATGAAAAGA-AACGTTTTACCTATt
gi|7 : TTTACTCCATATGCATTTTAAGTGAACTC-----------AAA-GTCATAC------ATAGTCAATTTCCATGAATTGG-TACATTTTACCTAT
gi|8 : taacccTTTACTCCATATGCATTTTAACTGGACGCTTCCAAACTCAAAA-GTCACAC------TTAGTCAATTTCCATatat
gi|9 : taactcAAACTCAAAC-GCCACAC------ATAGTCAATTTCTTTGAACAGA-TTCATTTTACTTATtttaccta