lowQualScore : 11 1 11 1 2222222222222 1 77777777777777 1 1 11 1
lowQualScore : 66 4 5 77777777 2 77777777 11 44 2 555 777 777777 0000000000000 5 6 3 1 2 00000000000000 6 3 1 88 1 3 22 22 3
lowQualScore : .. . . ........ . ........ .. .. . ... ... ...... ............. . . . . . .............. . . . .. . . .. .. .
lowQualScore : 88 1 2 22222222 0 66666666 66 88 6 888 444 444444 2222222222222 7 8 8 7 9 66666666666666 4 6 3 44 8 8 33 33 5
consensus : ATAGCGCGAGGATTTTATGAATGGCGTTAC--------G-C--------GAGGATTTTATGAA--TGGCGTTACGTC---ATA-NCG--C---GA--G--G--NA---TT-TGTCATAGCGCGAGGATTTTAT-GAATGGCGTTACGT-CA-AT-CGAACATGAGGAATT-TGTCATAGCGCGAGGATTTTAT-GAATGGCGTTACGTCA--TA--GCGCGAGGAGGGTAGA
Reference ( gi|1 ) : ATAGGACGAGGATTTTATGAATGACTTTAC--------G-C--------GAGGACCTTATGAA--TGGCGTAACGTC---ATA-TTG--T---GA--A--G--TG---TT-TGTCATAGCGTGAGTATTTTAT-GAATGACGTTACGT-GAAAT-CGAACATGAGGTATT-TGTCATAGCGCTAGGGGTTTAT-GAATGACGTTACGTCA--TA--GCGGGAGGAGGGTAGA
gi|3 : ATAGCAGAAGGATTTTATGAATGGCGCTGC--------G-T--------CATTGCCTGAGGAAATTGTCATAACGCTAGGATT-TTA--T---GA--A-----TGGAATTATGTCGTACTGCGAATATGGTA--GAATAA
gi|12 : cATAGCCCGAGGATTTTATGAATGGCGTTAC--------G-gcgcg
gi|9 : cATAGCGCTAGGATTTTATGAATGGCGTTAC--------ATC--------GAGGAtcatagcgcgaggaggataggataaacgcgt
gi|15 : tggcattaagtcataccgcgtagaacttgtcATAGCGCGAGGATTTTATTAATGGCATTAC--------G-ggatagtataattgcgtg
gi|5 : TAGCATGAGGATTTTATGAATGGTGTTACGCCATAGAG-C--------AAGGAATTTGC-AA--TAGCGCAAGG-----ATT-TTA--T---GA--A-----TGAC-TT-AGTCATAGCttattgcgcaacgcaggtatgataagcgcgt
gi|24 : CAAGGATTCTATGAATGGCGTTAC--------G-actaggagggtaggataagcacatg
gi|16 : agcgCGAGGGTTTTATGAATGATGTTAC--------tcatagcgcgaagataattagcgc
gi|14 : cgCGAGGATTTTGTGAATGACGTCAC--------G-T--------CATGACatcatagtgttaggaaggtaagataagcacgtg
gi|2 : aaagcgGAGGAATTTGTCA------TTGC--------G-C--------GAGGAT-TTATGAA--TGACGTTACGTC---AAA-GCG--C---GAGGA--G--TG---Ttaaagaagggtagtataagcgcgt
gi|6 : gcgcagggatattatgaatagcgttacgtcaaagcgagaggtatttgtcattgcgcgaggattctataaattatgttacttcaaagcgaAGGATTTTATGAATGGCGCTGC--------G-T--------CATTGCCTGAGGAAATTGTCATAACGCTAGGATT-TTA--T---GA--ATGG--AG---TTATGTCATACTGCGAGAATaggacacgtg
gi|8 : agaGATTTTATAAATGGCGTTAC--------G-TCATAGCGTGAAGATATTATAAA--TGGCGTTACGTC---ATG-Tggtaaaataagcgcg
gi|2 : tC--------G-C--------AGGGATATTATGAA--TAGCGTTACGTC---AAA-GCG--A---GA--G--G--TA---TT-TGTCATTGCGCGAGGATTCTAT-AAATTATGTTACTT-CAAAG-CGA----GAGGAATT-TGTCATTGCGCGA-GGATTTAT-GAATGACGTTACGTCA--AA--GCGCGAGGAGTGTAGagcccaatgagggtaggataagcacatg
gi|4 : gC--------G-T--------GAGCATTTTATGAA--TGGCATA-CGTC---ATA-ACG--T---AA--G--GATTG---TT---TCACAGCGCAAGGATGTTAT-AAATGGCGCTACGT-gacacgtg
gi|9 : atagC--------G-C--------TAGGATTTTATGAA--TGGCGTTACATC---catagtgcaaggagagtaggataaatacatg
gi|24 : tggcattaagtcataccgcgtagaacttgtcatagC--------G-C--------AAGGATTCTATGAA--TGGCGTTACGTC---ATA-GCG--C---GA--A--G--gaggaggatagtataattgcgtg
gi|16 : agC--------G-C--------GAGGGTTTTATGAA--TGATGTTACATC---ATA-GTG--TTAGGA--A--G--ataattagcgc
gi|14 : C--------G-C--------GAGGATTTTGTGAA--TGACGTCACGTC---ATgtaagataagcacgtg
gi|17 : aaagC--------G-C--------GAGGAATTTTTGAA--TAGCGTTATGTC---Agactaaagaagggtagtataagcgcgt
gi|15 : atagC--------G-C--------GAGGATTTTATTAA--TGGCATTACGT-----TA-TTG--C---Gaagcgcaaagaagctaggataagc
gi|7 : atag--------G-C--------AAAGATTTTATGAA--TGGTGTTACGTC---ATA-GCG--T---AA--G--G--caacgcaggtatgataagcgcgt
gi|12 : tactcttaagtcagcaagaaatttgtcatagt-C--------GAGGATTTTATGAA--TGGCGTTACGTC---ATA-GCG--C---GA--G--G--agagaaggaaaagcgcgtgc
gi|5 : catagcc--------GAGGATTTTATGAA--TGGTGTTACGCC---ATA-GAG--C---AA--G--G--AA---TT-TGCAATAGCGCAAGGATTTTAT-GAATGAC-TTAaggataggataaacgcgt
gi|19 : tagcat--------GAGGATTTTATGAA--TGGAGTTATGTC---Agtcatagcactaggagggtaggataagcacatg
gi|6 : tcatattgAGGATTTTATGAA--TGGCGCTGCGTC-----A-TTGCCT---GA--G--G--AA---AT-TGTCATAACGCTAGGATTTTAT-GAATGGAGTTATGT-aagcgcaaggagggaaggatat
gi|3 : agaAGGATTTTATGAA--TGGCGCTGCGTC-----A-TTGCCT---GA--G--G--AA---AT-TGTCATAACGCTAGGATTTTAT-GAATGGAATTATGTCGTACTGCGAATATGcatactgcgagaatggtaaaataagcgcg
gi|21 : catagcagaAGGATTTTATGAA--TGGCATTATGTC---ATAGTTG--T---Ggtagaataagcgcg
gi|8 : agcaaGATTTTATAAA--TGGCGTTACGTC---ATA-GCG--T---GA--A--G--------------ATA-----------TTAT-AAATGGCGTTACGT-ggtaagataagcgcatgc
gi|11 : tGATTTTATCAA--TGGTGTTATGTC---ATA-GCG--C---AA--G--G--TA---TT-TGTCATAGCACGAcatgtagcccaatgagggtaggataagcacatg
gi|9 : gtgccattttacaagcatacaac--TGGCATTAAGTC---ATA-CCG--C---GT--A--G--AA---CT-TGTCATAGCGCTAGGATTTTAT-GAATGGCGTTACAT-agat
gi|20 : GGCGTTAAGTC---TTG-ACG--T---GA--G--G--AA---TT-TGTCAAAGCATGAGAATTTTAT-GAATAGTGTcgaggaggatagtataattgcgtg
gi|10 : ---TT-CGTCATAGCGATAGGATTTTTTTAAATGGCGTTACGT-
gi|7 : ataatagcacgaggaa---TT-TGTCATAGTGCAAAGATTTTAT-GAATGGTGTTACGT-catagcgcgtggagggtaggataagctcgtg
gi|19 : tactcttaagtcagcaagaaaTCATATTG-GAGGATTTTAT-GAATGGAGTTATGT-CAAAG-CGCA-AGGAGGcatagcgtaaggagagaaggaaaagcgcgtgc
gi|3 : CATAGCAGAAGGATTTTAT-GAATGGCGCTGCGT-CA--T-TG--CCTGAGGAAAT-TGTCATAACGCTAGGATTTTAT-GAATGGAATTATGTCG--TA--CTGCGAATATGGTAGAgaaggatat
gi|12 : CATAGCCCGAGGATTTTAT-GAATGGCGTTACGT-ataagcgcg
gi|4 : ATAGCGTGAGCATTTTAT-GAATGGCAT-ACGT-CA--T---AACGTAAGG-ATTGTTTCACAGCGCAAGGATGTTAT-AAATGGCGCTACGTCA--TA--GTGCAAGGAGAGTAGcatagcgcgaggaggataggataaacgcgt
gi|15 : ATAGCGCGAGGATTTTAT-TAATGGCATTACGT-gataaatacatg
gi|5 : TAGCATGAGGATTTTAT-GAATGGTGTTACGC---CAT-AGAGCA--AGGAATT-TGCAATAGCGCAAGGATTTTAT-GAATGAC-TTA-GTCA--TA--GCACTAGGAGGGTAGtattgcgcaacgcaggtatgataagcgcgt
gi|26 : TAGCACGAGAATTTTAT-GGATGGTGTTATGT-gataagcacatg
gi|24 : AGCGCAAGGATTCTAT-GAATGGCGTTACGT-cgtggcacaaggcaggt
gi|14 : AGCGCGAGGATTTTGT-GAATGACGTCACGT-catagcgcgaagataattagcgc
gi|16 : aaCGCGAGGGTTTTAT-GAATGATGTTACAT-catgactaaagaagggtagtataagcgcgt
gi|6 : AGGATTTTAT-GAATGGCGCTGCGT-CA--T-TG--CCTGAGGAAAT-TGTCATAACGCTAGGATTTTAT-GAATGGAGTTATGTCA--TA--CTGCGAGAATGGTAAAcatagtgttaggaaggtaagataagcacgtg
gi|8 : agaATTTTAT-AAATGGCGTTACG--------------------------TCATAGCGTGAAGATATTAT-AAATGGCGTTACGTCATGTA--GCCCAATGAGGGTAGataagcgcg
gi|11 : tgATTTTAT-CAATGGTGTTATGT-CATAG-CG--CA--AGGTATT-TGTCATAGCACgataagcacatg
gi|10 : gtgccattttacaagcatacaacgAGCACGAGGAATT-CGTCATAGCGATAGGATTTTTTTAAATGGCGTTACGTCA--TA--GCGCGTGGAGGGTAGgaagat
gi|20 : ataatACGTGAGGAATT-TGTCAAAGCATGAGAATTTTAT-GAATAGTGTgataagctcgtg
gi|7 : ggcgttaagtcttgATT-TGTCATAGTGCAAAGATTTTAT-GAATGGTGTTACGTCA--TA--GCGTAAGGAGAGAAG
gi|9 : tactcttaagtcagcaagaaACT-TGTCATAGCGCTAGGATTTTAT-GAATGGCGTTACATC-----------GAGGAGGATAGgaaaagcgcgtgc
gi|12 : tggcattaagtcataccgcgtagaCATAGCCCGAGGATTTTAT-GAATGGCGTTACGTCA--TA--GCGCGAGGAGGATAGtataattgcgtg
gi|17 : ATAGCGCGAGGAATTTTT-GAATAGCGTTATGTCA--AA--GCGCAAAGAAGCTAGgataaacgcgt
gi|15 : ATAGCGCGAGGATTTTAT-TAATGGCATTACGTTA--TT--GCGgataagc
gi|23 : ATAGTGG-AGGATTTTAC-TAATGGCATTATGTCA---A--GCGCAAGGAGGGTAGcaacgcaggtatgataagcgcgt
gi|24 : AGCGCAAGGATTCTAT-GAATGGCGTTACGTCA--TA--GCGCGAAGAgatat
gi|14 : AGCGCGAGGATTTTGT-GAATGACGTCACGTCA--TG--ACTAAAGAAGGGTAGtaattagcgc
gi|16 : aaCGCGAGGGTTTTAT-GAATGATGTTACATCA--TA--GTGTTAGGAAGGTAtataagcgcgt
gi|21 : AGGATTTTAT-GAATGGCATTATGTCA--TA--Gagataagcacgtg
gi|19 : agcaaAGGATTTTAT-GAATGGAGTTATGTCA--AA--GCGCAAGGAGGGAAGttgtgggtaagataagcgcatgc
gi|11 : tcatattggTTTAT-CAATGGTGTTATGTCA--TA--GCGCAAGGgatat
gi|18 : gtgccattttacaagcatacaacgatTTTAT-GAATTGTGTTATGTTG--TA--GTGCGAGGAGGGTGGtatttgtcatagcacgaagat
gi|13 : acatttTTTAT-GAATA----TATGTCA--TATAGCAGAAGGAGGGTAGgataagcgcgtac
gi|29 : cataacgtgcagtaATGACGTCACATCA--TA--GCGCGAGGAGGGTAGgataaacacatg
gi|28 : TGACGTTATGTCA--TA--GCACGAGGAGGGTAgatgagcgcgtag
gi|30 : GGCGTTACGTCA--TA--ACGCAGGGAGGGTAGagataagtgtgtgca
4 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|22 ): AGGGGATTTTATTCATAAAGTTATGTCATAATGCTAGAAGGGTAGGATAAGCACATG
Unaligned ( gi|25 ): TGTTTAAAGACATTACGTCATAGCCCGAGAGGGCACGATAAGCGCGTGCAA
Unaligned ( gi|27 ): ATGCATGGTGTTTTGTCAAAGTGCAAGGAGGGTAGGATAAACACGTGC
Unaligned ( gi|31 ): TGTGTGATTTTTTATTTTTAAGCAAGCGATTCATGT
Alignments
lowQualScore : 22 1 555555555
lowQualScore : 11 6 5 4 3 1 1 1 1 5 000000000 1 1 22 22 0
lowQualScore : .. . . . . . . . . . ......... . . .. .. .
lowQualScore : 00 0 0 7 2 0 4 0 1 0 222222222 9 7 11 11 7
consensus : ATAGGACGAGGATTTTATGAATGACTTTACGCGGGGATNTTATGAATGGCGTTACGTCATANCGCGAGGTATTTGTCATAGCGCGAGGATTTTATGAATGGCGTTACGT-CAAT-GAGCGTGAGGAATTTGTCATAGCGCG-AGGATTTTAT-GAATGGCGTTACGTCA--TA--GCGCGAGGAGGGTAGA
Reference ( family-2694 ) : ATAGCGCGAGGATTTTATGAATGGCGTTACGCGAGGATTTTATGAATGGCGTTACGTCATANCGCGAGGNATTTGTCATAGCGCGAGGATTTTATGAATGGCGTTACGT-CAATCGAACATGAGGAATTTGTCATAGCGCG-AGGATTTTAT-GAATGGCGTTACGTCA--TA--GCGCGAGGAGGGTAGA
gi|1 : ATAGGACGAGGATTTTATGAATGACTTTACGCGAGGACCTTATGAATGGCGTAACGTCATATTGTGAAGTGTTTGTCATAGCGTGAGTATTTTATGAATGACGTTACGTGAAATCGAACATGAGGTATTTGTCATAGCGCT-AGGGGTTTAT-GAATGACGTTACGTCA--TA--GCGGGAGGAGGGTAGA
gi|10 : AGCACGAGGAATTCGTCATAGCGAT-AGGATTTTTTTAAATGGCGTTACGTCA--TA--GCGCGTGGAGGGTAG
gi|11 : ataatGATTTTATCAATGGTGTTATGTCATAGCGCAAGGTATTTGTCATAGCACGAAGATgataagctcgtg
gi|12 : gtgccattttacaagcatacaacCATAGCCCG-AGGATTTTAT-GAATGGCGTTACGTCA--TA--GCGCGAGGAGGATAG
gi|13 : CATAACGTGCAGTATTT-AT-GAATA----TATGTCA--TATAGCAGAAGGAGGGTAGgataaacgcgt
gi|14 : AGCGCG-AGGATTTTGT-GAATGACGTCACGTCA--TG--ACTAAAGAAGGGTAGgataaacacatg
gi|15 : aaATAGCGCG-AGGATTTTAT-TAATGGCATTACGTTA--TT--GCGCAACGCAGGTAtataagcgcgt
gi|16 : CGCG-AGGGTTTTAT-GAATGATGTTACATCA--TA--GTGTTAGGAAGGTAtgataagcgcgt
gi|17 : ATAGCGCG-AGGAATTTTT-GAATAGCGTTATGTCA--AA--GCGCAAAGAAGCTAGagataagcacgtg
gi|18 : TTTTAT-GAATTGTGTTATGTTG--TA--GTGCGAGGAGGGTGGgataagc
gi|19 : acattTCATATTG-G-AGGATTTTAT-GAATGGAGTTATGTCA--AA--GCGCAAGGAGGGAAGgataagcgcgtac
gi|2 : CGCAGGGATATTATGAATAGCGTTACGTCAAAGCGAGAGGTATTTGTCATTGCGCGAGGATTCTATAAATTATGTTACTT-CAA---AGCGAGAGGAATTTGTCATTGCGCG-AGGA-TTTAT-GAATGACGTTACGTCA--AA--GCGCGAGGAGTGTAGgatat
gi|20 : gGGCGTTAAGTCTTGACGTGAGGAATTTGTCAAAGCATGAGAATTTTATGAATAGTGTgacacgtg
gi|21 : -AGGATTTTAT-GAATGGCATTATGTCA--TA--
gi|22 : agcaaG-GGGATTTTAT-TCATAAAGTTATGTCA--TA--ATGCTAGAAGGGTAGttgtgggtaagataagcgcatgc
gi|23 : aATAGTG-G-AGGATTTTAC-TAATGGCATTATGTCA---A--GCGCAAGGAGGGTAGgataagcacatg
gi|24 : AGCGCA-AGGATTCTAT-GAATGGCGTTACGTCA--TA--GCGCGAAGAgatat
gi|26 : TAGCACG-AGAATTTTAT-GGATGGTGTTATGTCG--TG--GCACAAGGCAGGTtaattagcgc
gi|27 : AT-GCATGGTGTTTTGTCA--AA--GTGCAAGGAGGGTAG
gi|28 : TGACGTTATGTCA--TA--GCACGAGGAGGGTAgataaacacgtgc
gi|29 : ATGACGTCACATCA--TA--GCGCGAGGAGGGTAGagataagtgtgtgca
gi|3 : CATAGCAGAAGGATTTTATGAATGGCGCTGCGT-CA-TTG--CCTGAGGAAATTGTCATAACGCT-AGGATTTTAT-GAATGGAATTATGTCG--TA--CTGCGAATATGGTAGAgatgagcgcgtag
gi|30 : GGCGTTACGTCA--TA--ACGCAGGGAGGGTAGataagcgcg
gi|4 : ATAGCGTGAGCATTTTATGAATGGCAT-ACGT-CA-T--AACGTAAGGATTGTTTCACAGCGCA-AGGATGTTAT-AAATGGCGCTACGTCA--TA--GTGCAAGGAGAGTAGgataagcatgtg
gi|5 : TAGCATGAGGATTTTATGAATGGTGTTACGC-CA-TAGAGCA--AGGAATTTGCAATAGCGCA-AGGATTTTAT-GAATGAC-TTA-GTCA--TA--GCACTAGGAGGGTAGgataaatacatg
gi|6 : AGGATTTTATGAATGGCGCTGCGT-CA-TTG--CCTGAGGAAATTGTCATAACGCT-AGGATTTTAT-GAATGGAGTTATGTCA--TA--CTGCGAGAATGGTAAAgataagcacatg
gi|7 : agaAGAAATTTGTCATAGTGCA-AAGATTTTAT-GAATGGTGTTACGTCA--TA--GCGTAAGGAGAGAAGataagcgcg
gi|8 : tactcttaagtcagcaGATTTTATAAATGGCGTTACGT-CA----------------------TAGCGTG-AAGATATTAT-AAATGGCGTTACGTCATGTA--GCCCAATGAGGGTAGgaaaagcgcgtgc
gi|9 : tTGGCATTAAGTCATACCGCGTAGAACTTGTCATAGCGCTAGGATTTTATGAATGGCGTTACAT-CGAgataagcacatg
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|25 ): TGTTTAAAGACATTACGTCATAGCCCGAGAGGGCACGATAAGCGCGTGCAA
Unaligned ( gi|31 ): TGTGTGATTTTTTATTTTTAAGCAAGCGATTCATGT
Alignments
lowQualScore : 222 1 3333333333
lowQualScore : 2 2 3 333 3 1 8 0 1 0 0 7777777777 1 1 22 22 0
lowQualScore : . . . ... . . . . . . . .......... . . .. .. .
lowQualScore : 5 5 0 333 3 0 8 2 0 2 4 8888888888 8 7 11 11 7
consensus : ATAGCGCNAGGATTTTATGAATGGCNTTA---CGCGG-GGATNTTATGAATGGCGTTACGTCATANCGCGAGGTATTTGTCATAGCGCGAGGATTTTATGAATGGCGTTACGTCAN--TGAGCGTGAGGAATTTGTCATAGCGCG-AGGATTTTAT-GAATGGCGTTACGTCA--TA--GCGCGAGGAGGGTAGA
Reference ( family-2694 ) : ATAGGACGAGGATTTTATGAATGACTTTA---CGCGG-GGATNTTATGAATGGCGTTACGTCATANCGCGAGGTATTTGTCATAGCGCGAGGATTTTATGAATGGCGTTACGTCAA--TGAGCGTGAGGAATTTGTCATAGCGCG-AGGATTTTAT-GAATGGCGTTACGTCA--TA--GCGCGAGGAGGGTAGA
gi|1 : ATAGGACGAGGATTTTATGAATGACTTTA---CGCGA-GGACCTTATGAATGGCGTAACGTCATATTGTGAAGTGTTTGTCATAGCGTGAGTATTTTATGAATGACGTTACGTGAAATCGAACATGAGGTATTTGTCATAGCGCT-AGGGGTTTAT-GAATGACGTTACGTCA--TA--GCGGGAGGAGGGTAGA
gi|10 : AA--T-AGCACGAGGAATTCGTCATAGCGAT-AGGATTTTTTTAAATGGCGTTACGTCA--TA--GCGCGTGGAGGGTAG
gi|11 : atGATTTTATCAATGGTGTTATGTCATAGCGCAAGGTATTTGTCATAGCACGAAGATgataagctcgtg
gi|12 : gtgccattttacaagcatacaacCATAGCCCG-AGGATTTTAT-GAATGGCGTTACGTCA--TA--GCGCGAGGAGGATAG
gi|13 : CATAACGTGCAGTATTT-AT-GAATA----TATGTCA--TATAGCAGAAGGAGGGTAGgataaacgcgt
gi|14 : AGCGCG-AGGATTTTGT-GAATGACGTCACGTCA--TG--ACTAAAGAAGGGTAGgataaacacatg
gi|15 : aaATAGCGCG-AGGATTTTAT-TAATGGCATTACGTTA--TT--GCGCAACGCAGGTAtataagcgcgt
gi|16 : CGCG-AGGGTTTTAT-GAATGATGTTACATCA--TA--GTGTTAGGAAGGTAtgataagcgcgt
gi|17 : ATAGCGCG-AGGAATTTTT-GAATAGCGTTATGTCA--AA--GCGCAAAGAAGCTAGagataagcacgtg
gi|18 : TTTTAT-GAATTGTGTTATGTTG--TA--GTGCGAGGAGGGTGGgataagc
gi|19 : acattTCATATTG-G-AGGATTTTAT-GAATGGAGTTATGTCA--AA--GCGCAAGGAGGGAAGgataagcgcgtac
gi|2 : ---CGCAG-GGATATTATGAATAGCGTTACGTCAAAGCGAGAGGTATTTGTCATTGCGCGAGGATTCTATAAATTATGTTACTTCAA----AGCGAGAGGAATTTGTCATTGCGCG-AGGA-TTTAT-GAATGACGTTACGTCA--AA--GCGCGAGGAGTGTAGgatat
gi|20 : gGGCGTTAAGTCT---TGA-CGTGAGGAATTTGTCAAAGCATG-AGAATTTTAT-GAATAGTGTgacacgtg
gi|21 : -AGGATTTTAT-GAATGGCATTATGTCA--TA--
gi|22 : agcaaG-GGGATTTTAT-TCATAAAGTTATGTCA--TA--ATGCTAGAAGGGTAGttgtgggtaagataagcgcatgc
gi|23 : aATAGTG-G-AGGATTTTAC-TAATGGCATTATGTCA---A--GCGCAAGGAGGGTAGgataagcacatg
gi|24 : AGCGCA-AGGATTCTAT-GAATGGCGTTACGTCA--TA--GCGCGAAGAgatat
gi|26 : TAGCACG-AGAATTTTAT-GGATGGTGTTATGTCG--TG--GCACAAGGCAGGTtaattagcgc
gi|27 : AT-GCATGGTGTTTTGTCA--AA--GTGCAAGGAGGGTAG
gi|28 : TGACGTTATGTCA--TA--GCACGAGGAGGGTAgataaacacgtgc
gi|29 : ATGACGTCACATCA--TA--GCGCGAGGAGGGTAGagataagtgtgtgca
gi|3 : CATAGCAGAAGGATTTTATGAATGGCGCTGCGTCAT--TG--CCTGAGGAAATTGTCATAACGCT-AGGATTTTAT-GAATGGAATTATGTCG--TA--CTGCGAATATGGTAGAgatgagcgcgtag
gi|30 : GGCGTTACGTCA--TA--ACGCAGGGAGGGTAGataagcgcg
gi|4 : ATAGCGTGAGCATTTTATGAATGGCAT-ACGTCA---TAA-CGTAAGGATTGTTTCACAGCGCA-AGGATGTTAT-AAATGGCGCTACGTCA--TA--GTGCAAGGAGAGTAGgataagcatgtg
gi|5 : TAGCATGAGGATTTTATGAATGGTGTTACGCCAT--AGAGCA--AGGAATTTGCAATAGCGCA-AGGATTTTAT-GAATGAC-TTA-GTCA--TA--GCACTAGGAGGGTAGgataaatacatg
gi|6 : AGGATTTTATGAATGGCGCTGCGTCAT--TG--CCTGAGGAAATTGTCATAACGCT-AGGATTTTAT-GAATGGAGTTATGTCA--TA--CTGCGAGAATGGTAAAgataagcacatg
gi|7 : agaAGAAATTTGTCATAGTGCA-AAGATTTTAT-GAATGGTGTTACGTCA--TA--GCGTAAGGAGAGAAGataagcgcg
gi|8 : tactcttaagtcagcaGATTTTATAAATGGCGTTACGTCA-----------------------TAGCGTG-AAGATATTAT-AAATGGCGTTACGTCATGTA--GCCCAATGAGGGTAGgaaaagcgcgtgc
gi|9 : tTGGCATTAAGTCATACCGCGTAGAACTTGTCATAGCGCTAGGATTTTATGAATGGCGTTACATCGA--GGAGgataagcacatg
gi|9 : ATAGCGCTAGGATTTTATGAATGGCGTTACATCGAGGAGGATAGTAT-AATTGCGTgatagtataattgcgtg
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|25 ): TGTTTAAAGACATTACGTCATAGCCCGAGAGGGCACGATAAGCGCGTGCAA
Unaligned ( gi|31 ): TGTGTGATTTTTTATTTTTAAGCAAGCGATTCATGT
Alignments
lowQualScore : 222 1 22222222
lowQualScore : 2 1 1 333 3 1 8 0 1 0 0 66 44444444 1 1 22 22 0
lowQualScore : . . . ... . . . . . . . .. ........ . . .. .. .
lowQualScore : 5 0 0 333 3 0 8 2 0 2 4 11 55555555 8 7 11 11 7
consensus : ATAGCGCNAGGATTTTATGAATGGCNTTA---CGCGG-GGATNTTATGAATGGCGTTACGTCATANCGCGAGGTATTTGTCATAGCGCGAGGATTTTATGAATGGCGTTACGT--CAT-GAGCGTGAGGAATTTGTCATAGCGCG-AGGATTTTAT-GAATGGCGTTACGTCA--TA--GCGCGAGGAGGGTAGA
Reference ( family-2694 ) : ATAGCGCNAGGATTTTATGAATGGCNTTA---CGCGG-GGATNTTATGAATGGCGTTACGTCATANCGCGAGGTATTTGTCATAGCGCGAGGATTTTATGAATGGCGTTACGT--CANTGAGCGTGAGGAATTTGTCATAGCGCG-AGGATTTTAT-GAATGGCGTTACGTCA--TA--GCGCGAGGAGGGTAGA
gi|1 : ATAGGACGAGGATTTTATGAATGACTTTA---CGCGA-GGACCTTATGAATGGCGTAACGTCATATTGTGAAGTGTTTGTCATAGCGTGAGTATTTTATGAATGACGTTACGTGAAATCGAACATGAGGTATTTGTCATAGCGCT-AGGGGTTTAT-GAATGACGTTACGTCA--TA--GCGGGAGGAGGGTAGA
gi|10 : AGCACGAGGAATTCGTCATAGCGAT-AGGATTTTTTTAAATGGCGTTACGTCA--TA--GCGCGTGGAGGGTAG
gi|11 : ataatGATTTTATCAATGGTGTTATGTCATAGCGCAAGGTATTTGTCATAGCACGAAGATgataagctcgtg
gi|12 : gtgccattttacaagcatacaacCATAGCCCG-AGGATTTTAT-GAATGGCGTTACGTCA--TA--GCGCGAGGAGGATAG
gi|13 : CATAACGTGCAGTATTT-AT-GAATA----TATGTCA--TATAGCAGAAGGAGGGTAGgataaacgcgt
gi|14 : AGCGCG-AGGATTTTGT-GAATGACGTCACGTCA--TG--ACTAAAGAAGGGTAGgataaacacatg
gi|15 : aaATAGCGCG-AGGATTTTAT-TAATGGCATTACGTTA--TT--GCGCAACGCAGGTAtataagcgcgt
gi|16 : CGCG-AGGGTTTTAT-GAATGATGTTACATCA--TA--GTGTTAGGAAGGTAtgataagcgcgt
gi|17 : ATAGCGCG-AGGAATTTTT-GAATAGCGTTATGTCA--AA--GCGCAAAGAAGCTAGagataagcacgtg
gi|18 : TTTTAT-GAATTGTGTTATGTTG--TA--GTGCGAGGAGGGTGGgataagc
gi|19 : acattTCATATTG-G-AGGATTTTAT-GAATGGAGTTATGTCA--AA--GCGCAAGGAGGGAAGgataagcgcgtac
gi|2 : ---CGCAG-GGATATTATGAATAGCGTTACGTCAAAGCGAGAGGTATTTGTCATTGCGCGAGGATTCTATAAATTATGTTACTT--CAA--AGCGAGAGGAATTTGTCATTGCGCG-AGGA-TTTAT-GAATGACGTTACGTCA--AA--GCGCGAGGAGTGTAGgatat
gi|20 : gGGCGTTAAGT--C-TTGA-CGTGAGGAATTTGTCAAAGCATG-AGAATTTTAT-GAATAGTGTgacacgtg
gi|21 : -AGGATTTTAT-GAATGGCATTATGTCA--TA--
gi|22 : agcaaG-GGGATTTTAT-TCATAAAGTTATGTCA--TA--ATGCTAGAAGGGTAGttgtgggtaagataagcgcatgc
gi|23 : aATAGTG-G-AGGATTTTAC-TAATGGCATTATGTCA---A--GCGCAAGGAGGGTAGgataagcacatg
gi|24 : AGCGCA-AGGATTCTAT-GAATGGCGTTACGTCA--TA--GCGCGAAGAgatat
gi|26 : TAGCACG-AGAATTTTAT-GGATGGTGTTATGTCG--TG--GCACAAGGCAGGTtaattagcgc
gi|27 : AT-GCATGGTGTTTTGTCA--AA--GTGCAAGGAGGGTAG
gi|28 : TGACGTTATGTCA--TA--GCACGAGGAGGGTAgataaacacgtgc
gi|29 : ATGACGTCACATCA--TA--GCGCGAGGAGGGTAGagataagtgtgtgca
gi|3 : CATAGCAGAAGGATTTTATGAATGGCGCTGCGT--CATTG--CCTGAGGAAATTGTCATAACGCT-AGGATTTTAT-GAATGGAATTATGTCG--TA--CTGCGAATATGGTAGAgatgagcgcgtag
gi|30 : GGCGTTACGTCA--TA--ACGCAGGGAGGGTAGataagcgcg
gi|4 : ATAGCGTGAGCATTTTATGAATGGCAT-ACGT--CAT--AACGTAAGGATTGTTTCACAGCGCA-AGGATGTTAT-AAATGGCGCTACGTCA--TA--GTGCAAGGAGAGTAGgataagcatgtg
gi|5 : TAGCATGAGGATTTTATGAATGGTGTTACGC--CATAGAGCA--AGGAATTTGCAATAGCGCA-AGGATTTTAT-GAATGAC-TTA-GTCA--TA--GCACTAGGAGGGTAGgataaatacatg
gi|6 : AGGATTTTATGAATGGCGCTGCGT--CATTG--CCTGAGGAAATTGTCATAACGCT-AGGATTTTAT-GAATGGAGTTATGTCA--TA--CTGCGAGAATGGTAAAgataagcacatg
gi|7 : agaAGAAATTTGTCATAGTGCA-AAGATTTTAT-GAATGGTGTTACGTCA--TA--GCGTAAGGAGAGAAGataagcgcg
gi|8 : tactcttaagtcagcaGATTTTATAAATGGCGTTACGT--CA---------------------TAGCGTG-AAGATATTAT-AAATGGCGTTACGTCATGTA--GCCCAATGAGGGTAGgaaaagcgcgtgc
gi|9 : tTGGCATTAAGTCATACCGCGTAGAACTTGTCATAGCGCTAGGATTTTATGAATGGCGTTACAT--CGAGGAGgataagcacatg
gi|9 : ATAGCGCTAGGATTTTATGAATGGCGTTACATCGAGGAGGATAGTAT-AATTGCGTgatagtataattgcgtg
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|25 ): TGTTTAAAGACATTACGTCATAGCCCGAGAGGGCACGATAAGCGCGTGCAA
Unaligned ( gi|31 ): TGTGTGATTTTTTATTTTTAAGCAAGCGATTCATGT
Alignments
lowQualScore : 222 1 22222222
lowQualScore : 2 1 1 333 3 1 8 0 1 0 0 55555555 22 1 1 22 22 0
lowQualScore : . . . ... . . . . . . . ........ .. . . .. .. .
lowQualScore : 5 0 0 333 3 0 8 2 0 2 4 44444444 00 8 7 11 11 7
consensus : ATAGCGCNAGGATTTTATGAATGGCNTTA---CGCGG-GGATNTTATGAATGGCGTTACGTCATANCGCGAGGTATTTGTCATAGCGCGAGGATTTTATGAATGGCGTTACGTCA---T-GAGCGTGAGGAATTTGTCATAGCGCG-AGGATTTTAT-GAATGGCGTTACGTCA--TA--GCGCGAGGAGGGTAGA
Reference ( family-2694 ) : ATAGCGCNAGGATTTTATGAATGGCNTTA---CGCGG-GGATNTTATGAATGGCGTTACGTCATANCGCGAGGTATTTGTCATAGCGCGAGGATTTTATGAATGGCGTTACGTCA---T-GAGCGTGAGGAATTTGTCATAGCGCG-AGGATTTTAT-GAATGGCGTTACGTCA--TA--GCGCGAGGAGGGTAGA
gi|1 : ATAGGACGAGGATTTTATGAATGACTTTA---CGCGA-GGACCTTATGAATGGCGTAACGTCATATTGTGAAGTGTTTGTCATAGCGTGAGTATTTTATGAATGACGTTACGTGAAATC-GAACATGAGGTATTTGTCATAGCGCT-AGGGGTTTAT-GAATGACGTTACGTCA--TA--GCGGGAGGAGGGTAGA
gi|10 : AGCACGAGGAATTCGTCATAGCGAT-AGGATTTTTTTAAATGGCGTTACGTCA--TA--GCGCGTGGAGGGTAG
gi|11 : ataatGATTTTATCAATGGTGTTATGTCATAGCGCAAGGTATTTGTCATAGCACGAAGATgataagctcgtg
gi|12 : gtgccattttacaagcatacaacCATAGCCCG-AGGATTTTAT-GAATGGCGTTACGTCA--TA--GCGCGAGGAGGATAG
gi|13 : CATAACGTGCAGTATTT-AT-GAATA----TATGTCA--TATAGCAGAAGGAGGGTAGgataaacgcgt
gi|14 : AGCGCG-AGGATTTTGT-GAATGACGTCACGTCA--TG--ACTAAAGAAGGGTAGgataaacacatg
gi|15 : aaATAGCGCG-AGGATTTTAT-TAATGGCATTACGTTA--TT--GCGCAACGCAGGTAtataagcgcgt
gi|16 : CGCG-AGGGTTTTAT-GAATGATGTTACATCA--TA--GTGTTAGGAAGGTAtgataagcgcgt
gi|17 : ATAGCGCG-AGGAATTTTT-GAATAGCGTTATGTCA--AA--GCGCAAAGAAGCTAGagataagcacgtg
gi|18 : TTTTAT-GAATTGTGTTATGTTG--TA--GTGCGAGGAGGGTGGgataagc
gi|19 : acattTCATATTG-G-AGGATTTTAT-GAATGGAGTTATGTCA--AA--GCGCAAGGAGGGAAGgataagcgcgtac
gi|2 : ---CGCAG-GGATATTATGAATAGCGTTACGTCAAAGCGAGAGGTATTTGTCATTGCGCGAGGATTCTATAAATTATGTTACTTCA-----AAGCGAGAGGAATTTGTCATTGCGCG-AGGA-TTTAT-GAATGACGTTACGTCA--AA--GCGCGAGGAGTGTAGgatat
gi|20 : gGGCGTTAAGTCT---T-GA-CGTGAGGAATTTGTCAAAGCATG-AGAATTTTAT-GAATAGTGTgacacgtg
gi|21 : -AGGATTTTAT-GAATGGCATTATGTCA--TA--
gi|21 : agcaaAGGATTTTATGAATGGCATTATGTCA---T-AGTTGTGGGTAAttgtgggtaagataagcgcatgc
gi|22 : agcaaG-GGGATTTTAT-TCATAAAGTTATGTCA--TA--ATGCTAGAAGGGTAGgataagcgcatgc
gi|23 : aATAGTG-G-AGGATTTTAC-TAATGGCATTATGTCA---A--GCGCAAGGAGGGTAGgataagcacatg
gi|24 : AGCGCA-AGGATTCTAT-GAATGGCGTTACGTCA--TA--GCGCGAAGAgatat
gi|26 : TAGCACG-AGAATTTTAT-GGATGGTGTTATGTCG--TG--GCACAAGGCAGGTtaattagcgc
gi|27 : AT-GCATGGTGTTTTGTCA--AA--GTGCAAGGAGGGTAG
gi|28 : TGACGTTATGTCA--TA--GCACGAGGAGGGTAgataaacacgtgc
gi|29 : ATGACGTCACATCA--TA--GCGCGAGGAGGGTAGagataagtgtgtgca
gi|3 : CATAGCAGAAGGATTTTATGAATGGCGCTGCGTCA---T-T-GCCTGAGGAAATTGTCATAACGCT-AGGATTTTAT-GAATGGAATTATGTCG--TA--CTGCGAATATGGTAGAgatgagcgcgtag
gi|30 : GGCGTTACGTCA--TA--ACGCAGGGAGGGTAGataagcgcg
gi|4 : ATAGCGTGAGCATTTTATGAATGGCAT-ACGTCA---T-AA-CGTAAGGATTGTTTCACAGCGCA-AGGATGTTAT-AAATGGCGCTACGTCA--TA--GTGCAAGGAGAGTAGgataagcatgtg
gi|5 : TAGCATGAGGATTTTATGAATGGTGTTACGCCA---TAGAGCA--AGGAATTTGCAATAGCGCA-AGGATTTTAT-GAATGAC-TTA-GTCA--TA--GCACTAGGAGGGTAGgataaatacatg
gi|6 : AGGATTTTATGAATGGCGCTGCGTCA---T-T-GCCTGAGGAAATTGTCATAACGCT-AGGATTTTAT-GAATGGAGTTATGTCA--TA--CTGCGAGAATGGTAAAgataagcacatg
gi|7 : agaTTAAGTCA---------GCAAGAAATTTGTCATAGTGCA-AAGATTTTAT-GAATGGTGTTACGTCA--TA--GCGTAAGGAGAGAAGataagcgcg
gi|8 : tactcGATTTTATAAATGGCGTTACGTCA---T--AGCGTGAAGA--------TA------------TTAT-AAATGGCGTTACGTCATGTA--GCCCAATGAGGGTAGgaaaagcgcgtgc
gi|9 : tTGGCATTAAGTCATACCGCGTAGAACTTGTCATAGCGCTAGGATTTTATGAATGGCGTTACATC------GAG---GAGGAgataagcacatg
gi|9 : ATAGCGCTAGGATTTTATGAATGGCGTTACATCGAGGAGGATAGTAT-AATTGCGTtagtataattgcgtg
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|25 ): TGTTTAAAGACATTACGTCATAGCCCGAGAGGGCACGATAAGCGCGTGCAA
Unaligned ( gi|31 ): TGTGTGATTTTTTATTTTTAAGCAAGCGATTCATGT
Alignments
lowQualScore : 222 1 22222222
lowQualScore : 2 1 1 333 3 1 8 0 1 0 0 55555555 22 1 1 22 22 0
lowQualScore : . . . ... . . . . . . . ........ .. . . .. .. .
lowQualScore : 5 0 0 333 3 0 8 2 0 2 4 44444444 00 8 7 11 11 7
consensus : ATAGCGCNAGGATTTTATGAATGGCNTTA---CGCGG-GGATNTTATGAATGGCGTTACGTCATANCGCGAGGTATTTGTCATAGCGCGAGGATTTTATGAATGGCGTTACGTCA---T-GAGCGTGAGGAATTTGTCATAGCGCG-AGGATTTTAT-GAATGGCGTTACGTCA--TA--GCGCGAGGAGGGTAGA
Reference ( family-2694 ) : ATAGCGCNAGGATTTTATGAATGGCNTTA---CGCGG-GGATNTTATGAATGGCGTTACGTCATANCGCGAGGTATTTGTCATAGCGCGAGGATTTTATGAATGGCGTTACGTCA---T-GAGCGTGAGGAATTTGTCATAGCGCG-AGGATTTTAT-GAATGGCGTTACGTCA--TA--GCGCGAGGAGGGTAGA
gi|1 : ATAGGACGAGGATTTTATGAATGACTTTA---CGCGA-GGACCTTATGAATGGCGTAACGTCATATTGTGAAGTGTTTGTCATAGCGTGAGTATTTTATGAATGACGTTACGTGAAATC-GAACATGAGGTATTTGTCATAGCGCT-AGGGGTTTAT-GAATGACGTTACGTCA--TA--GCGGGAGGAGGGTAGA
gi|10 : AGCACGAGGAATTCGTCATAGCGAT-AGGATTTTTTTAAATGGCGTTACGTCA--TA--GCGCGTGGAGGGTAG
gi|11 : ataatGATTTTATCAATGGTGTTATGTCATAGCGCAAGGTATTTGTCATAGCACGAAGATgataagctcgtg
gi|12 : gtgccattttacaagcatacaacCATAGCCCG-AGGATTTTAT-GAATGGCGTTACGTCA--TA--GCGCGAGGAGGATAG
gi|13 : CATAACGTGCAGTATTT-AT-GAATA----TATGTCA--TATAGCAGAAGGAGGGTAGgataaacgcgt
gi|14 : AGCGCG-AGGATTTTGT-GAATGACGTCACGTCA--TG--ACTAAAGAAGGGTAGgataaacacatg
gi|15 : aaATAGCGCG-AGGATTTTAT-TAATGGCATTACGTTA--TT--GCGCAACGCAGGTAtataagcgcgt
gi|16 : CGCG-AGGGTTTTAT-GAATGATGTTACATCA--TA--GTGTTAGGAAGGTAtgataagcgcgt
gi|17 : ATAGCGCG-AGGAATTTTT-GAATAGCGTTATGTCA--AA--GCGCAAAGAAGCTAGagataagcacgtg
gi|18 : TTTTAT-GAATTGTGTTATGTTG--TA--GTGCGAGGAGGGTGGgataagc
gi|19 : acattTCATATTG-G-AGGATTTTAT-GAATGGAGTTATGTCA--AA--GCGCAAGGAGGGAAGgataagcgcgtac
gi|2 : ---CGCAG-GGATATTATGAATAGCGTTACGTCAAAGCGAGAGGTATTTGTCATTGCGCGAGGATTCTATAAATTATGTTACTTCA-----AAGCGAGAGGAATTTGTCATTGCGCG-AGGA-TTTAT-GAATGACGTTACGTCA--AA--GCGCGAGGAGTGTAGgatat
gi|20 : gGGCGTTAAGTCT---T-GA-CGTGAGGAATTTGTCAAAGCATG-AGAATTTTAT-GAATAGTGTgacacgtg
gi|21 : -AGGATTTTAT-GAATGGCATTATGTCA--TA--
gi|21 : agcaaAGGATTTTATGAATGGCATTATGTCA---T-AGTTGTGGGTAAttgtgggtaagataagcgcatgc
gi|22 : agcaaG-GGGATTTTAT-TCATAAAGTTATGTCA--TA--ATGCTAGAAGGGTAGgataagcgcatgc
gi|23 : aATAGTG-G-AGGATTTTAC-TAATGGCATTATGTCA---A--GCGCAAGGAGGGTAGgataagcacatg
gi|24 : AGCGCA-AGGATTCTAT-GAATGGCGTTACGTCA--TA--GCGCGAAGAgatat
gi|26 : TAGCACG-AGAATTTTAT-GGATGGTGTTATGTCG--TG--GCACAAGGCAGGTtaattagcgc
gi|27 : AT-GCATGGTGTTTTGTCA--AA--GTGCAAGGAGGGTAG
gi|28 : TGACGTTATGTCA--TA--GCACGAGGAGGGTAgataaacacgtgc
gi|29 : ATGACGTCACATCA--TA--GCGCGAGGAGGGTAGagataagtgtgtgca
gi|3 : CATAGCAGAAGGATTTTATGAATGGCGCTGCGTCA---T-T-GCCTGAGGAAATTGTCATAACGCT-AGGATTTTAT-GAATGGAATTATGTCG--TA--CTGCGAATATGGTAGAgatgagcgcgtag
gi|30 : GGCGTTACGTCA--TA--ACGCAGGGAGGGTAGataagcgcg
gi|4 : ATAGCGTGAGCATTTTATGAATGGCAT-ACGTCA---T-AA-CGTAAGGATTGTTTCACAGCGCA-AGGATGTTAT-AAATGGCGCTACGTCA--TA--GTGCAAGGAGAGTAGgataagcatgtg
gi|5 : TAGCATGAGGATTTTATGAATGGTGTTACGCCA---TAGAGCA--AGGAATTTGCAATAGCGCA-AGGATTTTAT-GAATGAC-TTA-GTCA--TA--GCACTAGGAGGGTAGgataaatacatg
gi|6 : AGGATTTTATGAATGGCGCTGCGTCA---T-T-GCCTGAGGAAATTGTCATAACGCT-AGGATTTTAT-GAATGGAGTTATGTCA--TA--CTGCGAGAATGGTAAAgataagcacatg
gi|7 : agaTTAAGTCA---------GCAAGAAATTTGTCATAGTGCA-AAGATTTTAT-GAATGGTGTTACGTCA--TA--GCGTAAGGAGAGAAGataagcgcg
gi|8 : tactcGATTTTATAAATGGCGTTACGTCA---T--AGCGTGAAGA--------TA------------TTAT-AAATGGCGTTACGTCATGTA--GCCCAATGAGGGTAGgaaaagcgcgtgc
gi|9 : tTGGCATTAAGTCATACCGCGTAGAACTTGTCATAGCGCTAGGATTTTATGAATGGCGTTACATC------GAG---GAGGAgataagcacatg
gi|9 : ATAGCGCTAGGATTTTATGAATGGCGTTACATCGAGGAGGATAGTAT-AATTGCGTtagtataattgcgtg
blockSeqs : C T G CAT A T C G TAGAG AC C T TG TA
blockSeqs : . . A G G TAGT GA . . . .
blockSeqs : A . C AAG GT . . . .
blockSeqs : TGA GT . . . .
blockSeqs : TTG CT . . . .
blockSeqs : TAA GT . . . .
blockSeqs : TTG CT . . . .
blockSeqs : TAG GC . . . .
blockSeqs : GAG GT . . . .
blockSeqs : . A . . . .
blockSeqs : . . . . .
blockSeqs : . . . .
blockSeqs : . . . .
blockSeqs : . . . .
blockSeqs : . . . .
blockSeqs : . . . .
blockSeqs : . . . .
blockSeqs : . . . .
blockSeqs : . . . .
blockSeqs : . . . .
blockSeqs : . . . .
blockSeqs : . . .
blockSeqs : . . .
blockSeqs : . .
blockSeqs : . .
blockSeqCons : TAG*****
originalCons : ATAGCGCNAGGATTTTATGAATGGCNTTA---CGCGG-GGATNTTATGAATGGCGTTACGTCATANCGCGAGGTATTTGTCATAGCGCGAGGATTTTATGAATGGCGTTACGTCA---T-GAGCGTGAGGAATTTGTCATAGCGCG-AGGATTTTAT-GAATGGCGTTACGTCA--TA--GCGCGAGGAGGGTAGA
finalCons : ATAGCGCNAGGATTTTATGAATGGCNTTA---CGCGG-GGATNTTATGAATGGCGTTACGTCATANCGCGAGGTATTTGTCATAGCGCGAGGATTTTATGAATGGCGTTACGTCATAG-----CGTGAGGAATTTGTCATAGCGCG-AGGATTTTAT-GAATGGCGTTACGTCA--TA--GCGCGAGGAGGGTAGA
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|25 ): TGTTTAAAGACATTACGTCATAGCCCGAGAGGGCACGATAAGCGCGTGCAA
Unaligned ( gi|31 ): TGTGTGATTTTTTATTTTTAAGCAAGCGATTCATGT
Alignments
lowQualScore : 22
lowQualScore : 11 1 6 1 1 1 3 2 3 7777 1 1 22 22 0
lowQualScore : .. . . . . . . . . .... . . .. .. .
lowQualScore : 00 0 0 0 0 0 7 2 3 1111 7 6 00 00 3
consensus : ATAGGACGAGGATTTTATGAATGACTTTACGCGGGGATNTTATGAATGGCGTTACGTCATAGCGCGAGGTATTTGTCATAGCGCGAGGATTTTATGAATGGCGTTACGTCATAG-CG----CGAGGAATTTGTCATAGCGCG-AGGATTTTAT-GAATGGCGTTACGTCA--TA--GCGCGAGGAGGGTAGA
Reference ( family-2694 ) : ATAGCGCNAGGATTTTATGAATGGCNTTACGCGGGGATNTTATGAATGGCGTTACGTCATANCGCGAGGTATTTGTCATAGCGCGAGGATTTTATGAATGGCGTTACGTCATAG-CG----TGAGGAATTTGTCATAGCGCG-AGGATTTTAT-GAATGGCGTTACGTCA--TA--GCGCGAGGAGGGTAGA
gi|1 : ATAGGACGAGGATTTTATGAATGACTTTACGCGAGGACCTTATGAATGGCGTAACGTCATATTGTGAAGTGTTTGTCATAGCGTGAGTATTTTATGAATGACGTTACGTGAAAT-CGAACATGAGGTATTTGTCATAGCGCT-AGGGGTTTAT-GAATGACGTTACGTCA--TA--GCGGGAGGAGGGTAGA
gi|10 : ATAG-CA----CGAGGAATTCGTCATAGCGAT-AGGATTTTTTTAAATGGCGTTACGTCA--TA--GCGCGTGGAGGGTAG
gi|11 : ataGATTTTATCAATGGTGTTATGTCATAGCGCAAGGTATTTGTCATAGCACGAAGATgataagctcgtg
gi|12 : gtgccattttacaagcatacaacCATAGCCCG-AGGATTTTAT-GAATGGCGTTACGTCA--TA--GCGCGAGGAGGATAG
gi|13 : CATAACGTGCAGTATTT-AT-GAATA----TATGTCA--TATAGCAGAAGGAGGGTAGgataaacgcgt
gi|14 : AGCGCG-AGGATTTTGT-GAATGACGTCACGTCA--TG--ACTAAAGAAGGGTAGgataaacacatg
gi|15 : aaATAGCGCG-AGGATTTTAT-TAATGGCATTACGTTA--TT--GCGCAACGCAGGTAtataagcgcgt
gi|16 : CGCG-AGGGTTTTAT-GAATGATGTTACATCA--TA--GTGTTAGGAAGGTAtgataagcgcgt
gi|17 : ATAGCGCG-AGGAATTTTT-GAATAGCGTTATGTCA--AA--GCGCAAAGAAGCTAGagataagcacgtg
gi|18 : TTTTAT-GAATTGTGTTATGTTG--TA--GTGCGAGGAGGGTGGgataagc
gi|19 : acattTCATATTG-G-AGGATTTTAT-GAATGGAGTTATGTCA--AA--GCGCAAGGAGGGAAGgataagcgcgtac
gi|2 : CGCAGGGATATTATGAATAGCGTTACGTCAAAGCGAGAGGTATTTGTCATTGCGCGAGGATTCTATAAATTATGTTACTTCAAAG-CG----AGAGGAATTTGTCATTGCGCG-AGGA-TTTAT-GAATGACGTTACGTCA--AA--GCGCGAGGAGTGTAGgatat
gi|20 : gGGCGTTAAGTCTTGA-CG----TGAGGAATTTGTCAAAGCATG-AGAATTTTAT-GAATAGTGTgacacgtg
gi|21 : -AGGATTTTAT-GAATGGCATTATGTCA--TA--
gi|21 : agcaaAGGATTTTATGAATGGCATTATGTCATAGTTG----TGGGTAAttgtgggtaagataagcgcatgc
gi|22 : agcaaG-GGGATTTTAT-TCATAAAGTTATGTCA--TA--ATGCTAGAAGGGTAGgataagcgcatgc
gi|23 : aATAGTG-G-AGGATTTTAC-TAATGGCATTATGTCA---A--GCGCAAGGAGGGTAGgataagcacatg
gi|24 : AGCGCA-AGGATTCTAT-GAATGGCGTTACGTCA--TA--GCGCGAAGAgatat
gi|26 : TAGCACG-AGAATTTTAT-GGATGGTGTTATGTCG--TG--GCACAAGGCAGGTtaattagcgc
gi|27 : AT-GCATGGTGTTTTGTCA--AA--GTGCAAGGAGGGTAG
gi|28 : TGACGTTATGTCA--TA--GCACGAGGAGGGTAgataaacacgtgc
gi|29 : ATGACGTCACATCA--TA--GCGCGAGGAGGGTAGagataagtgtgtgca
gi|3 : CATAGCAGAAGGATTTTATGAATGGCGCTGCGTCATTG-CC----TGAGGAAATTGTCATAACGCT-AGGATTTTAT-GAATGGAATTATGTCG--TA--CTGCGAATATGGTAGAgatgagcgcgtag
gi|30 : GGCGTTACGTCA--TA--ACGCAGGGAGGGTAGataagcgcg
gi|4 : ATAGCGTGAGCATTTTATGAATGGCAT-ACGTCATAA-CG----TAAGGATTGTTTCACAGCGCA-AGGATGTTAT-AAATGGCGCTACGTCA--TA--GTGCAAGGAGAGTAGgataagcatgtg
gi|5 : TAGCATGAGGATTTTATGAATGGTGTTACGCCATAG-AG----CAAGGAATTTGCAATAGCGCA-AGGATTTTAT-GAATGAC-TTA-GTCA--TA--GCACTAGGAGGGTAGgataaatacatg
gi|6 : AGGATTTTATGAATGGCGCTGCGTCATTG-CC----TGAGGAAATTGTCATAACGCT-AGGATTTTAT-GAATGGAGTTATGTCA--TA--CTGCGAGAATGGTAAAgataagcacatg
gi|7 : agaTTAAGTCA-----G----CAAGAAATTTGTCATAGTGCA-AAGATTTTAT-GAATGGTGTTACGTCA--TA--GCGTAAGGAGAGAAGataagcgcg
gi|8 : tactcGATTTTATAAATGGCGTTACGTCATAG-CG----TGAAGA--------TA------------TTAT-AAATGGCGTTACGTCATGTA--GCCCAATGAGGGTAGgaaaagcgcgtgc
gi|9 : tTGGCATTAAGTCATAC-CG----CGTAGAACTTGTCATAGCGCT-AGGATTTTAT-GAATGGCGTTACAT-----------CGAGGAGGATAGgataagcacatg
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|25 ): TGTTTAAAGACATTACGTCATAGCCCGAGAGGGCACGATAAGCGCGTGCAA
Unaligned ( gi|31 ): TGTGTGATTTTTTATTTTTAAGCAAGCGATTCATGT