lowQualScore : 111111111111111111111111 11111111111111111111 111111
lowQualScore : 1 4444444444 11 1 22222222 1111 222222 22222 33333 2 111111 1 11 111 1 3333333333 333333333333333333333333 1 1 1 11 666666666666666666 22222 1 5555 1 22222 2222 1 111 3333333333333 33333 22 1 22222222222 1 2 5555555 444444444444444 00000000000000000000 1 11 777777777 1 000000 1 2222 33333333333 22 1 555555 222 1 2 1 1 1 2222222222 11 11 222 666666666666666666 1111 222 2 1 111 111111 22 22222 111 22222 1 222 33333333333333333333 11 33333333 11 7777777777777777777777777777777777 3333333333333333333333333333 1 1 111111111
lowQualScore : 0 6 33 9 4444444444 22 0 1 55555555 5 8 7777 8 8 8 1 999 8 6 8 333333 0 1 00000 7 1 1 33333 0 222222 9 5 77 999 7 3 0 6 5555555555 1 3 888888888888888888888888 5 0 0 99 111111111111111111 00000 8 1 0 3 0 2 6666 99 6 7 9 00000 8 2 1111 0 777 9999999999999 88888 11 9 0 1 1 6 66666666666 6 0 0 7 1 0 8 7 44 1 7 8 5555555 000000000000000 77777777777777777777 6 7 22 111111111 2 666666 3 8 0 3 0000 66666666666 00 6 5 666666 3 333 6 3 3 0 6 5 4 4 2 7 2 4 2 6 5 4 6 2 9999999999 6 3 66 88 111 9 6 222222222222222222 0000 888 44 888 1 5 1 4 5 777 2 3 222 333333 2 8 1 55 3 3 55555 1 3 4 666 5 3 6 6 4 6 6 9 00000 5 6 333 77777777777777777777 77 5 1 22222222 44 8888 4 2222222222222222222222222222222222 8 666 5 4 4 7777777777777777777777777777 2 4 5 4 6 9999 5 3 0 777777777 3
lowQualScore : . . .. . .......... .. . . ........ . . .... . . . . ... . . . ...... . . ..... . . . ..... . ...... . . .. ... . . . . .......... . . ........................ . . . .. .................. ..... . . . . . . .... .. . . . ..... . . .... . ... ............. ..... .. . . . . . ........... . . . . . . . . .. . . . ....... ............... .................... . . .. ......... . ...... . . . . .... ........... .. . . ...... . ... . . . . . . . . . . . . . . . . . . .......... . . .. .. ... . . .................. .... ... .. ... . . . . . ... . . ... ...... . . . .. . . ..... . . . ... . . . . . . . . ..... . . ... .................... .. . . ........ .. .... . .................................. . ... . . . ............................ . . . . . .... . . . ......... .
lowQualScore : 2 0 88 4 2222222222 44 2 4 66666666 0 0 0000 0 0 0 4 444 0 0 0 000000 8 0 00000 8 0 4 22222 0 888888 6 2 44 555 8 0 2 0 0000000000 4 2 222222222222222222222222 0 0 8 77 111111111111111111 88888 0 4 2 0 0 0 0000 00 0 0 8 00000 2 2 2222 5 555 5555555555555 00000 22 0 0 0 0 7 99999999999 0 8 0 0 2 2 8 0 55 0 3 3 0000000 333333333333333 33333333333333333333 0 0 00 555555555 0 000000 3 3 7 7 3333 77777777777 00 0 0 000000 7 333 0 3 3 7 0 0 0 0 5 0 5 0 5 0 0 0 0 5 3333333333 7 7 33 33 777 7 0 888888888888888888 0000 555 22 222 4 0 0 0 8 000 8 2 000 444444 8 0 4 66 8 5 88888 8 7 2 333 2 3 7 7 0 7 7 3 55555 3 7 333 88888888888888888888 88 7 4 00000000 88 5555 3 3333333333333333333333333333333333 9 000 5 0 0 0000000000000000000000000000 7 0 0 4 0 8888 0 9 1 777777777 0
consensus : TTCCATCCGTAATACTCAATGTTTAAAAACTAAAAA---AAN---TTTTTACTTTCATTTTCCACATTAAATTCTGGATTCAATNCCAAA-T----T-T-T-AGGAACTTTTACCGTATATT-TTTT-CAGTTTTGG------TGTATTTTATAAGTATACC-----CCCTCTCTGTCCAAAGTACAATAATCTGACTCAAGTC--TTCCATATTCATTTGGTTATTTTTTTTATTCATTTCTTACAAAACGTCTATTGTTATATACTAGTAAGTAGACAAAACATTGGAGATTA----------CAAATATGGCAAGAATATTTCATTACANGATCAGAAA---AAAATN-------TT------AGATCTTCATATTCATTTATATCATAAAATGGGCATTTTACTTGTCANTTTAAAATA----TTTATGACATGTTGCAATACGTTGTCC-TGACATCAAAATATAAAACGTACCGTAG-AAAAAGCATATTCATCTTTCTTAATACATCAACTGACAATGCAAAA-----ATACCAATACATCG----AACTTATAC---CGTCG---TAAAAC-T-TAAAAACAAATAGAATATTGTACCCCTA-CCCCCTTTCTGACTTTTGCCAATTTTGCCAATTTCCGAANNTTAACATGTTACAATACGTTGTCCC-GACATCAAATTATAAAGCATACCATAGAAAAAGTATATCATCTTTCTTAATACATCAGCTGACAATGT-AAAATACTTATAC---A---TCAAACT--TTCACCATC----TAAAACTT---------C-------TAGAATATTGTACCCCTACCCCATTTCGGCTTTTTGCCAGTTTTGCCAATTTCTAAGGGTTTCATGTTACAATTAGTTA-----GCCCGATATCAAA-TACTAGGTACGGC--AGA--AAGTA-ATCATCCTTCTTACTATATCAATTATNTAGACTTTCTTCTGAAAGGAAAAANAACAA---CTAGT-TTTGGGTTTACATCCGTCAATGTATGTCTGACGTTTGTCAGTANTTNGTNAATTNACATACAAATNACNACCGAGTCCCTNTTTCATTTCCCNAACACAATTCAAAT-TCACTGTAAAGNGACATACAACAACATTTACACGTAG--TAAGACTGGAATCTGNAAAGTCAACGATTCTCCGACCACACTGA-CT----GTCTAACATGAGCGTTCTACATTTTAACCCAGATTAAGGTTATCAAAAACAGGCAATCGTCATTATCCCACA--ATC-T-TNNTTCT-TAAA-AATATGACCACCGACGTAACAGTGATCAATTAATTCACGC-AACCGTAAAACATTGTGT-TT-TNAGACGATTTATTCGTGA-AA-TGTCACGA--AAATCACGAAT-GATA---ATATT----------TT---GG---TAACTCGTGT-GTAGAAA-ATT--AAGTCTNGATCATCTTCGACGCTCGCTTTT-T-C-TAAGA----AAA---GCCTA--AGAAAAGCAAGCGTCGC-AGAT-GATCAA-GA-CT--AAAAAAT-AGG-GGANTT--CCCAAGTTACGGACTTATCCGAAGTTA-CCCGA---TTTT-TTCCGATTTCG----NT-ATGGACGGAATAC
Reference ( gi|1 ) : TTCCATCCATAATACTCAATATTTGAAATCTAAAAA---AAC---CTTTTACATTCATTTTACACATTAAATTTTGGATTAAATCCCAAA-T----T-T-T-AGGAACTTTTATCATATATT-TCTT-CAGTTTTGG------TGTATTTTATAAGTATACC-----CCCTCTTTGTCCAAAGTACAATAATCTGACTCAAA-C--TTCAATATTCATTTGGTTATTTTTCTTATTTATTTCTAACAAAAAATCTGTTGTTATATACTAGTAAGTAAACAAAAAATTGGAAATTA----------CAAATATGGCAAGAATATTTCATTACAGGATCAGAAA---AAAAAAAAAAAAATT------AGATCTTCATATTGATTAATATTATAAAATGGGCATTTTACTTGTCCTTTTAAAATA----TTTATAACAAATTGCAATAAGTAATCC-TGACATCAAAATATAAAACATACAGTAG-AAAAAGCACATGGAACTTTTTTAATACATCAATTAATATTGCAAAA-----ATACCAATATATTA----AACTTTTAC---CGTCA---TAAA---T-TAAAAACATATAGAATATAATAACCCTA-CCCCCTTTTTAACTTTTGCCAATTTTGCCAATTTTCGAATATTAACATGTTGCAATACGTTGTCCC-GACATCAAATTATAAAATATACCAGAGAAAAAGTATATCATCTTTCTTAATACATCAGCTGACAATGTAAAAATACTAATAC---T---TCAAACT--ATTACCATC----TAAAACAT---------C-------TAGAACATTGTACCCCAACTTCATTTTGGCTTTTTGCCAATTTTGATAATTTCAAAGGGTTTCATGTTACAATGAGTTACCAATACCTGATATCAAA-TACAAGGCACACC--AGATCAAGCAAATTATCCTTCTTACTATATCAATTATAAAGATTTTCGTCT----ACAAAAACAACAA---CTAAT-TTTGTGTTTACATCCGCCAATGTGTGTCTGCCATTTGTCAGTATTTTGTCATTTCACATACAAATAACCACCAAGTCGCTTTTTCACTTCCCCAACACAATTTAAATGCCACTGGAAAGGGACATACAGAAACATTTACACGTAG--TAAGACTGGAATCAAGAAAGTCAATGATTCTTCGACCTCACTGAGCTCACAGTCTAAAATGAACATTCTACATTTTAACCCAGATTAAGGTTATCATAAACAGGCAATTGCCACTATCCCACA--ATC-T-TAATCCT-TAAACAATATGACCACCGACATAACAGTGTTCAATTAATTCATGC-ATCCGTAAAACGTTGTGT-TT-TAAGACGATTTATTCGTGA-AA-TATCATTA--AAATCAAGAAT-GATA---ATATT----------CT---GG---TAACTTGTGT-GTAGAAA-ATT--AAGTCTAAATCATCTTTGATGCTTGCTTTT-T-CATAAGA----AAA---GCCTA--AGAAAACCAAGCATTCC-AGGT-GATCAA-GA-TT--AAAAAATCAGG-AGATTTCCCCCAAGTTACAGCCTTATGCGAAGTTA-CCTGA---TTTT-TTCCAATTTTG----AT-ATGGACGAAATACTT
gi|2 : TTCCATTCATTATACTCAGTGTTGAAAAACTAAAAA---CTC---TTTTTACTGTCTTTTAACACTTTAAATTCTGAATTCAATCCTAAA-T----T-T-TTAGGAACTTTTATCGTATATT-TTTTTCAATTTTGG------TTTATTTTACAAGTATACC-----CCCTCTGTGTGTAAGGTACAATATTCTGACTCAAGTC--TTCCATATTCGTTT---T-TTTTTTTTATTAATTTCTTACAAAACATCTTTTCTTATATACTAGTAAGTAGGCAAAACATTGGAGATTATAACAAAATACAAATACGGCACGAATATTCTATTTTATAATCAGAAA---AAAATA--------T------AGATCGTCATATGCATTAATAT---AAAATGGGCATTTTATTTGTCACTTTAAA---------TATGACATATTGTAATAC----TCC-TGACATCAAAATATAAAAGGTACAGTAG-AGAAAGCACATT-AACTGTTTTAATACATCAACTGATAATGCAAAA-----ATACCAATATATCA----AACTTATAC---CGTCA---AAAA---T-TAAAAACAAATAGAATATTATACCACTA-CAACCGTTTTGACTTTTGCCAAATTTGCCAATTTTCGAAATTTAACATGTTACAATACGTCGCCCT-GACATCAAACTATAAAATATACCACAGAAAAAGT-CATCATCTTTCCTAATACATCAGCTGAAAATGTGACAATATTTATAC---A---TCAAAGTTCATCA-CAT-----TGAAACAA---------T-------TAGAATATTGTACCCCTACCCCATTTTGGCTTTTTGTCAGTTTTG---------AAGGGTTTCATGTTACAATTAGTTA-----GCCTTTTATCAAT-TACTAGGTATGGC--AGA-------------CCTTCATACTATATCAGTTATATAAACTTTCTTCTGAAAAAAAAAACAACAACATCTAGTGTTTG-GTTTACATCCGCCAATGTATAT
gi|6 : TTCCGTCCACAATACTCAATGTTTAAAAACTGAAAA---AAA---TTCTTACTTTCACTTTCCACATTAAATT------------CCAAA-T----T-TAT-AGGAACTTTTACAGTATATT-TTTA-CAGTTTTCGTATACATGTATTTCATAAGTATGCC-----CTCTCTCTGCCCAAAGTACAATATTCTGACTCAGT-C--TCTCATATTCATT------TTTTTTATATTTAACTC--ACAGA----CCATTGTTATATACAGGTAAGTAAACTAAAAATTGGAGATTA----------CAAATATGGCAAGAATATTTCATAACATGATCAGAAATTT-----------AGTTTATGTGAGATCTTCATATTCATTTATAACATAAAATTGGCATTTTACATGTCaaaaacaattcaaattcactggaaagagacatacagtaatatttacacatagtaagactggaatctagaaagtcaaacactctccgaccatactgacctgtctaacatgattgattttaaacaaaaacaggaaatcgtcattatacaatctgtattcttttaaaatatgaccaccgacgaaacagtgatcaattaattcatgcaaccgttaaacattgtggttttagacgatttattcgtgaaatgtcatgaaaatcacgaatgatacaattttgaaaactggtgtgaagaaaattaaaagtcttaatcattttcaacgcttgatttttttaataaaatactaagaaaagcaagcgtcccagatgatcaaggcttaaaacatagggaattttccaagttacgaacgtgtccgaagttaccctgttttccgatttaatcatagacgaa
gi|10 : TTCCATGTGTAACGCTCAATGTTAGAAA-CTAAAAA---AAAAAATTTTTATTTTCATTTTCCACAATCAATTCTG-----AATACAACA-T----T-T-T-AGGAACATTTAACGTATATTCTTTT-TAGTTTTGG------TGTATTTTATA------CA-----CCCTCTCGGTCCAAAGTACAAGAAAGTGACAGAAG-CTTTTC-ATACTCAGTTGTTTATTTTT-TTATTCCTTTCTTACAAA
gi|12 : aTCCATCCATAATACTCAGTGTTTAAAAACTAAAAAGAAAAT---TTTTTACATTCATTTTCCACTTTATATTCTGGATTCAATCCCAAAGT----T-T-T-AGGAATTTTTACTGTATATC-TTTT-CAGTTTTGG------TGTATTTTtcatatattatacac
gi|4 : aaATAATACGAAATGTTTAAAACCTAAAAT---T-C---TTTTTACTGTCATTTTCCACATTAAATGTTGGATTCAGTACCAAA-TAAATTAT-T-AAGAACATTTACCGTATATT-TTTC-CAGTTTCGG------TGTAATTTATTAGTTTACCGTGCCCCCTCTCTGTCCAAAGTACAAAAATCTGACCCAAGTC--TTCCATATTCATTTGGTTATATTTTTTATTCATTTCTTACAAAATGTCTATAGTTATATACTAGTAAGTAGACAGTACAATAGAGATTA----------CAAATATTACAAGAATATTTCATTACAGGACCAGAAT---AAAAATGTATG--TT------AGATCTTCATATTCATTTATATTATATAATGGGTATTTTACTTGTCATTTTGAAATAACACTTT--------TTGCAATAAGTAATCC-TGACATCAAAATATAAAATGTACAGTAGAAAAAAGCATATTTA--CTTTTTAATACATCACCTGATAATGCAAAA-----ATAACAATA
gi|3 : gAAGTATATC-----CC-TCCCTGTCCAAAGTACAATAATCTGACTCAAGTC--TTCCATATTCATTTGGTTACTTTT-TTATTCATTTCTTACAAAACATATATTGTTATATACTAGTAAGTAGACAAAACATTGGAGATTA----------CAAATATGGCAAGATTATTTCATTACAGGATCAGAAA---AAAATGTATG---TT------ATATCTTCATATTCATTCATATCATAAAATGAGCATTTTACTTGTCAATTTAAAA--------TATAACATATTGCGATAAGTTATCC-TGACGTCAAAATATAAAAacaataacattaacaagaatattaatatgttacaatacattgtcccgacaacaaattataaagcaaatcatagaaaaagtatatcatctttcttaatacatcaagtgacaatgcaaatactaatacatcaaacttacacgatctaaaacttcaaaaacttagaatattgtaccccta
gi|17 : TATTGTTATATACCATTAA-TAGACAAAACATTATAGATTA----------CACATAAGACAAGTATAGTTTATAACAAGATCAGAggaatctataaccccaaccccctttctgacttttgccaattttggcatgttacaatacattgtccctggcatcaaattataaaacataccataggaaaagtatatcatctttcttaatacatcagctgacaatgttaaatacttatacatgtacatcaaacttttaccatcgatctaaaacttgaaaaaaaacagaatattgtacccgtaccccatttcgactttttgccaattttgccaatttctaagggtttcatgttacaattagttagcctgatatcaaatactaggtacagcaggtcaagtaaattatccttcttactatatcaattatctagactttcttctggaaaaaaaccaactagttttgggtttgcatccgtcaatgtatgtctgacgtttgtcagtattttgtcaattcatatacaaattacgaccgagtccctatttcatttcccgaacacactgtaaagtgacatacaacaacatttacatgtagtataagactggaatctgaaaagtccacgattctccgtcttacatcaatgatctacattttaacccagattaatgttatcaaaacaggcaatcgtcattatcccacaatcttcattctttaaaaatatgaccaccgacataacagtgatcaattaattcatccaactgtaaaacattatattttaagacaatttattcatgaaatgtcaagaaaattactaatgataatattttggtaactcgtgtgtagaaaatcgtcttcggcgcttgctttttcctaagaaaag
gi|4 : aAGAATA----TT---AATATGTTACAATACATTGTCC-CGACAACAAATTATAAAGCAAATCATAG-AAAAAGTATAT-CATCTTTCTTAATACATCAAGTGACAATGC--AA-----ATACTAATACATCA----AACTTACAC---GATC----TAAAACTT-CAAAAAC-T-TAGAATATTGTACCCCTA-
gi|3 : gataatacgaaatgtttaaaacctaaaattctttttactgtcattttccacattaaatgttggattcagtaccaaataaattattaagaacatttaccgtatatttttccagtttcggtgtaatttattagtttaccgtgccccctctctgtccaaagtacaaaaatctgacccaagtcttccatattcatttggttatattttttattcatttcttacaaaatgtctatagttatatactagtaagtagacagtacaatagagattacaaatattacaagaatatttcattacaggaccagaataaaaatgtatgttagatcttcatattcatttatattatataatgggtattttacttgtcattttgaaataacactttttgcaataagtaatcctgacatcaaaatataaaatgtacagtagaaaaaagcatatttactttttaatacatcacctgataatgcaaaaataacaataacaataacattaacaA----TTT-TGGCATGTTACAATACATTGTCCCTGGCATCAAATTATAAAACATACCATAG-GAAAAGTATATC-ATCTTTCTTAATACATCAGCTGACAATGTTAAATACTTATACATGTACATCA----AACTTTTAC---CATCGATCTAAAAC-T-TGAAAAAAAACAGAATATTGTACCCGTA-CCCCATTTCGACTTTTTGCCAATTTTGCCAATTTCTAAGGGTT-TCATGTTACAATTAGTTAGCCT-GATATCAAA-TACTAGGTACAGCAGGT--CAAGTAAATTATCCTTCTTACTATATCA
gi|3 : aagtatatccctccctgtccaaagtacaataatctgactcaagtcttccatattcatttggttacttttttattcatttcttacaaaacatatattgttatatactagtaagtagacaaaacattggagattacaaatatggcaagattatttcattacaggatcagaaaaaaatgtatgttatatcttcatattcattcatatcataaaatgagcattttacttgtcaatttaaaatataacatattgcgataagttatcctgacgtcaaaatataaaaggaatctataaccccaaccccctttctgacttttgccaAAA-----ATAT-AACATATTGCGATAAGTTATCCTGACGTCA----AAA---TATAAAAG------GAATCTA-TAACCCCAACCCCCTTTCTGACTTTTGCCAATTTTG-----------------GCATGTTACAATACATTGTCCCTGGCATCAAATTATAAAACATACCATAGGAAAAGTATATCATCTTTCTTAATACATCAGCTGACAATGTTAAA-TACTTATACATGTACATCAAACT--TTTACCATCGATCTAAAACTTGAAAAAAAAC--------AGAATATTGTACCCGTACCCCATTTCGACTTTTTGCCAATTTTGCCAATTTCTAAGGGTTTCATGTTACAATTAGTTA-----GCCTGATATCAAA-TACTAGGTACAGC--AGGTCAAGTAAATTATCCTTCTTACTATATCAATTATCTAGACTTTCTTCT----GGAAAAAAACCAA---CTAGT-TTTGGGTTTGCATCCGTCAATGTATGTCTGACGTTTGTCAGTATTTTGTCAATTCATATACAAATTACGACCGAGTCCCTATTTCATTTCCCGAACACA------------CTGTAAAGTGACATACAACAACATTTACATGTAGTATAAGACTGGAATCTGAAAAGTCCACGATTCTCCG---T-------CTTACA-TC---AATGA----TCTACATTTTAACCCAGATTAATGTTATCA-AAACAGGCAATCGTCATTATCCCACA--ATC-T-TCATTCT-TTAAAAATATGACCACCGACATAACAGTGATCAATTAATTCATCC-AACTGTAAAACATTATAT-TT-TAAGACAATTTATTCATGA-AA-TGTCAAGA--AAATTACTAAT-GATA---ATATT----------TT---GG---TAACTCGTGT-GTAGA--------------AAATCGTCTTCGGCGCTTGCTTTT-T-CCTAAGA----AAA---Gattatctagactttcttctggaaaaaaaccaactagttttgggtttgcatccgtcaatgtatgtctgacgtttgtcagtattttgtcaattcatatacaaattacgaccgagtccctatttcatttcccgaacacactgtaaagtgacatacaacaacatttacatgtagtataagactggaatctgaaaagtccacgattctccgtcttacatcaatgatctacattttaacccagattaatgttatcaaaacaggcaatcgtcattatcccacaatcttcattctttaaaaatatgaccaccgacataacagtgatcaattaattcatccaactgtaaaacattatattttaagacaatttattcatgaaatgtcaagaaaattactaatgataatattttggtaactcgtgtgtagaaaatcgtcttcggcgcttgctttttcctaagaaaag
gi|4 : aagtatatccctccctgtccaaagtacaataatctgactcaagtcttccatattcatttggttacttttttattcatttcttacaaaacatatattgttatatactagtaagtagacaaaacattggagattacaaatatggcaagattatttcattacaggatcagaaaaaaatgtatgttatatcttcatattcattcatatcataaaatgagcattttacttgtcaatttGAATATTAATATGTTACAATACATTGTCCC-GACAACAAATTATAAAGCAAATCATAGAAAAAGTATATCATCTTTCTTAATACATCAAGTGACAATGC--AAATACTAATAC---A---TCAAACT--TACACGATC----TAAAACTT---------CAAAAACTTAGAATATTGTACCCC
gi|4 : gataatacgaaatgtttaaaacctaaaattctttttactgtcattttccacattaaatgttggattcagtaccaaataaattattaagaacatttaccgtatatttttccagtttcggtgtaatttattagtttaccgtgccccctctctgtccaaagtacaaaaatctgacccaagtcttccatattcatttggttatattttttattcatttcttacaaaatgtctatagttatatactagtaagtagacagtacaatagagattacaaatattacaagaatatttcattacaggaccagaataaaaatgtatgttagatcttcatattcatttatattatataatgggtattttacttgtcattttgaaataacactttttgcaataagtaatcctgacatcaaaatataaaatgtacagtagaaaaaagcatatttactttttaatacatcacctgataatgcaaaaataacaataacaataacattaacaaATGTTACAATACATTGT-----CCCGACAACAAATTATAAAGCAAATCATAGAAAAAGTATATCATCTTTCTTAATACATCAAta
gi|5 : gataatacgaaatgtttaaaacctaaaattctttttactgtcattttccacattaaatgttggattcagtaccaaataaattattaagaacatttaccgtatatttttccagtttcggtgtaatttattagtttaccgtgccccctctctgtccaaagtacaaaaatctgacccaagtcttccatattcatttggttatattttttattcatttcttacaaaatgtctatagttatatactagtaagtagacagtacaatagagattacaaatattacaagaatatttcattacaggaccagaataaaaatgtatgttagatcttcatattcatttatattatataatgggtattttacttgtcattttgaaataacactttttgcaataagtaatcctgacatcaaaatataaaatgtacagtagaaaaaagcatatttactttttaatacatcacctgataatgcaaaaataacaataacaataacattaacaagaatattaatAAATTATAA---CTAGT-TTTAGGTTTACATCCGTCAATGTATGTCTGACATTTGTCAGTAATTAATAAATTGACATACAAATAACCACCGAATCCCTTTTTCATTTCCCCAGCACAATTTAAATGTCACTGTTAAGGGACATACAACCACATTTACACGTAG--TAACACTGGAATCTGTAAAGTTAACGATTCTCCGACTACACTGAGCT----GTCTAGCATAAGCGTTCTACATTTTAA-CGAGATTAAGGTTATCAAAAACAGGTAATCTTCATTATCCCACA--CTCGT-TATTTTT-TAAA-AATATGACAATCGACATAACAGTGATCACATAATATATGC-AGCCATAACACATTGTGT-TT-TACGACCATTTAATAGTAA-AA-TTTTACGA--AAATCACGAGT-GATA---ATATT----------GT---GG---TAATTCGTGT----AAAA-ATGAAAAGTCTAAATCATCTTCGACGCTTGCTTTT-TCCCTAAGA----AAA---GTCTT--AGAAATGCGAGCGTCAT-AGAT-GATCAA-GA-TT--AAAAAAT-AGG-GGATT---CCAAAGTTACGTTTTTATCCGAAGTTC-CCCGA---TTTTATTCCGATTTAT----TT-ATGGACGGAATACgtgacaatgcaaatactaatacatcaaacttacacgatctaaaacttcaaaaacttagaatattgtaccccta
gi|2 : ataacaccaaatcAAAACAATTCAAAT-TCACTGGAAAGAGACATACAGTAATATTTACACATAG--TAAGACTGGAATCTAGAAAGTCAAACACTCTCCGACCATACTGACCT----GTCTAACATGA---TTG---ATTTTAAAC------AA---------AAACAGGAAATCGTCATTAT---ACA--ATC-TGTATTCTT-TTAA-AATATGACCACCGACGAAACAGTGATCAATTAATTCATGC-AACCGTTAAACATTGTGG-TT-TTAGACGATTTATTCGTGA-AA-TGTCATGA--AAATCACGAAT-GATA---CAATT----------TT---GA---AAACTGGTGT-GAAGAAA-ATTAAAAGTCTTAATCATTTTCAACGCTTGATTTT-T-T-TAATA----AAA---TACTA--AGAAAAGCAAGCGTCCC-AGAT-GATCAA-GGCTT--AAAACAT-AGG-GAATTT--TCCAAGTTACGAACGTGTCCGAAGTTACCCTG------TT-TTCCGA-TTTA----ATCATAGACGA
gi|7 : ttccattcattatactcagtgttgaaaaactaaaaactctttttactgtcttttaacactttaaattctgaattcaatcctaaatttttaggaacttttatcgtatatttttttcaattttggtttattttacaagtataccccctctgtgtgtaaggtacaatattctgactcaagtcttccatattcgttttttttttttattaatttcttacaaaacatcttttcttatatactagtaagtaggcaaaacattggagattataacaaaatacaaatacggcacgaatattctattttataatcagaaaaaaatatagatcgtcatatgcattaatataaaatgggcattttatttgtcactttaaatatgacatattgtaatactcctgacatcaaaatataaaaggtacagtagagaaagcacattaactgttttaatacatcaactgataatgcaaaaataccaatatatcaaacttataccgtcaaaaattaaaaacaaatagaatattataccactacaaccgttttgacttttgccaaatttgccaattttcgaaatttaacatgttacaatacgtcgccctgacatcaaactataaaatataccacagaaaaagtcatcatctttcctaatacatcagctgaaaatgtgacaatatttatacatcaaagttcatcacattgaaacaattagaatattgtacccctaccccattttggctttttgtcagttttgaagggtttcatgttacaattagttagccttttatcaattactaggtatggcagaccttcatactatatcagttatataaactttcttctgaaaaaaaaaacaacaacatctagtgtttggtttacatccgccaatgtatataGTTTAACATGAACATTCTTTATTTTAACACAGATTTAGGTAAACAAAAACAGACAATCGTCATTATTCCACA--TTT-T-TTATTCTATAA--AGCATGACCGCCGGCATAACAG-----GATCACTTCA--C-A---GTAACATATTGTGT-TT-TTAGGCAATTTATTTGGGA-AA-TGTAACGA--AAATCATGAAT-AAGA---ATATT----------TT---GA---TTAT---TGT-GTAAAAA-AATAAAAGTCTAAAGCGTCCTGGATG
gi|8 : gttACATTTTAACTCGTGTTTTGGTTACTA-AAACGTGCAGTCGTCA--ACCTCACACTACC-C-TTCTTCT-TAACCA---TGACCACCTACATAACG--------------CACGCGATCT-TAAAACGTGGTAT-TTCTAAAACGATTTATTCGAGATAC-TCTCGCGA--AAATCACG--TCGACAGCCATATT----------TT---TGACATAAC--GGGA-GTAG-----TT-----TTT--ATCAT-TTCGACGTTCGCTTTT---------------------CTCG--AGG----TAAGCGTCGC-AGATAAATCAA-GA-C---------TTAGG-GGAGTT--CCCATGTAACAGATTTAATCGATTTTT-GCCGA--------TTCCAACTTTG----atcaagccttaaaaaataagggaaatttccaagttacggattcatccgaagttatcgattttttccgattccgatatggacggaatgcc
gi|9 : ACCGACG--ACATTAT-CAATAAACACACGT-GACCTTAAA-CATTGTGTATC-TTAGACGATTTCTTCGTAA-AACTGTCACGAGAAAATCACGAAC-GGCAGCCATACTTGGCTCATCACTAAAGG---TATCTCTTGTCGTAAAAAGAGT--A-GTTTGTGTAGT-TTTGATGTTCGCCTTT----------------------CTA--A---AAGCAAACGTTTC-AGAT-AATCAA-GA-CT--CGGAA----GG-A-ATT---CCAAAGTTACGGATTTATCCGAAGTTA-TCTGC---TTTT-TGCCGATTTCGTTAAAC-ATGGAtcagtatgatcaacactaca
gi|11 : GT-GTAGAAA--------GTC---ATCATC---GACGCATGCCTTT-T-CCTAAAA----AAAAGAGNNNN--NNNNNNNNNNNNNNNNN-NNNN-NNNNNN-NN-NN--TAGATATTAGG-GGAATTCCT--AAGTTACGAACTTATCCGAAGTTA-CCAGA---TTTtta
gi|2 : aatattgtacccctagtccaaatgaaaataacaactaTT--AAGCCTTGATCATCTGGGACGCTTGC-TTT-T-CTTAGTATTTTA-------TTA--AAAAAATCAAGCGTTGA-AAAT-GATTAA-GA-CT--cgttatatatggaa
gi|14 : ttccattcattatactcagtgttgaaaaactaaaaactctttttactgtcttttaacactttaaattctgaattcaatcctaaatttttaggaacttttatcgtatatttttttcaattttggtttattttacaagtataccccctctgtgtgtaaggtacaatattctgactcaagtcttccatattcgttttttttttttattaatttcttacaaaacatcttttcttatatactagtaagtaggcaaaacattggagattataacaaaatacaaatacggcacgaatattctattttataatcagaaaaaaatatagatcgtcatatgcattaatataaaatgggcattttatttgtcactttaaatatgacatattgtaatactcctgacatcaaaatataaaaggtacagtagagaaagcacattaactgttttaatacatcaactgataatgcaaaaataccaatatatcaaacttataccgtcaaaaattaaaaacaaatagaatattataccactacaaccgttttgacttttgccaaatttgccaattttcgaaatttaacatgttacaatacgtcgccctgacatcaaactataaaatataccacagaaaaagtcatcatctttcctaatacatcagctgaaaatgtgacaatatttatacatcaaagttcatcacattgaaacaattagaatattgtacccctaccccattttggctttttgtcagttttgaagggtttcatgttacaattagttagccttttatcaattactaggtatggcagaccttcatactatatcagttatataaactttcttctgaaaaaaaaaacaacaacatctagtgtttggtttacatccgccaatgtatataaaaacaattcaaattcactggaaagagacatacagtaatatttacacatagtaagactggaatctagaaagtcaaacactctccgaccatactgacctgtctaacatgattgattttaaacaaaaacaggaaatcgtcattatacaatctgtattcttttaaaatatgaccaccgacgaaacagtgatcaattaattcatgcaaccgttaaacattgtggttttagacgatttattcgtgaaatgtcatgaaaatcacgaatgatacaattttgaaaactggtgtgaagaaaattaaaT--AAGTCTTGATCATCTCCGAAGCTTGCTT-------TGAGA----AAA---ACaacatagggaattttccaagttacgaacgtgtccgaagttaccctgttttccgatttaatcatagacgaa
gi|15 : agtctctatcatttcgacgttc--AAGTCTTGCTCATCCCCGACGCTTGCTTT------TAAAA----ACC---GCTTATCTTTAATCCAAGCGTCGC-AGAT-GA-CAACGA-TT--Agggaaatcccacgatacggatttaaccgaagttatccgatttttatgca
gi|14 : acaaaAGTCTCTATCAT-TTCGACGTTCGTTTTTCT-CA-------------------A--AG-----CAAGC-TTCGGAGAT-GATCAA-GA-CT--------TAGGG-AAAT----CCCACGATACGGATTTAACCGAAGTTA-TCCGA---TTTT-T
gi|7 : AATA----AAA---GTCTA--A--------AGCGTCCT-GGAT-GATCAA-GCCTT--AAAAAATAAGGGAAATTTCC---AAGTTACGGATTCATCCGAAGTTA-TC-GA---TTTT-TTCCGATTCCG----AT-ATGGACGGAATGCatgca
gi|13 : gttgtttaacatgaacattctttattttaacacagatttaggtaaacaaaaacagacaatcgtcattattccacattttttattctataaagcatgaccgccggcataacaggatcacttcacagtaacatattgtgtttttaggcaatttatttgggaaatgtaacgaaaatcatgaataagaatattttgattattgtgtaaaaaAGA----TAA---GTCTA--AGAAAAGCGAGCGTTCC-AGAT-GATCAA-GT-CTAAAAAAAAT-AGG-GGAGTT--TCCAAGTCACGGACTTATCCGAAGTTG-CCCGATTTTTTT-TTCTGATTTCG----TT-ATGGACAGAATACc
gi|18 : agtAAAAT-AGG-GGAATTCCC--AAGTTACAGACTTTTCCAAAGTTA-C-TGT---TTTT-TTCCGATTTCA----TT-ATGGACGGAATA
2 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|16 ): AGTCTAGATCTTCTGCAGCGCTTGATTTTCAAGACTTAGAAAAAAAATTAGAAAAACAAGCGTCCCTAATGATCTA
Unaligned ( gi|19 ): TATTCTTCTGACTACATGTATATCAATTATCTAGACTTTCTTCTGAAAAAAAA
Alignments
lowQualScore : 222222222 1111 111111 11111 111111 2222222222 111 55555555555555555 33333 1111 22222 1 1 333 1 222222 222 11 111 1 1 2222 222222 11 2222 77777777777777777777 111111111 33333 77777777777 111 111 333333 111 22 11 33333333 1 111 2222222222222222222 111 333333 11 555555555555555555555555555555 22222222
lowQualScore : 2 3 777777777 9 6 4444 6 6 6 6 6 999999 66666 1 222222 1 1 99 999 9999999999 1 8 444 55555555555555555 5 4 6 1 99999 4 9999 66666 3 5 3 1 555 7 6 22 6 999999 444 99 333 9999 3 0 6 9 99 0 2 0 3 4444 4 888888 33 2 1111 2 11111111111111111111 0 0 999999999 33333 6 0 88888888888 777 777 1 000000 1 777 0 0 1 1 1 1 1 1 1 1 2 4 00 3 1 0 33 1 0 2 444 77777777 4 6 77 3 1 3 1 1 99 6 22 6 6 6 33 222 5555 1 0 5 5 1 5 5 77 5 1 777 5555555555555555555 77 333 777777 00 2 0 0 1 111111111111111111111111111111 3 3 4 55 4 00000000 4 4 66666 0 3 7777 4 1
lowQualScore : . . ......... . . .... . . . . . ...... ..... . ...... . . .. ... .......... . . ... ................. . . . . ..... . .... ..... . . . . ... . . .. . ...... ... .. ... .... . . . . .. . . . . .... . ...... .. . .... . .................... . . ......... ..... . . ........... ... ... . ...... . ... . . . . . . . . . . . . .. . . . .. . . . ... ........ . . .. . . . . . .. . .. . . . .. ... .... . . . . . . . .. . . ... ................... .. ... ...... .. . . . . .............................. . . . .. . ........ . . ..... . . .... . .
lowQualScore : 8 2 222222222 8 7 2222 7 7 7 7 7 222222 77777 7 000000 7 0 22 333 2222222222 0 0 000 44444444444444444 6 4 4 0 88888 2 5555 55555 7 0 3 0 333 3 0 88 0 777777 333 33 333 0000 3 7 7 0 00 0 0 8 2 5555 0 888888 88 5 2222 5 22222222222222222222 7 7 777777777 33333 0 7 00000000000 555 555 0 222222 0 555 2 7 0 0 0 0 0 0 0 0 5 2 88 0 0 2 88 0 2 5 000 11111111 6 0 77 7 7 5 7 0 22 7 00 7 7 7 11 999 9999 9 3 7 7 0 7 7 99 0 0 555 6666666666666666666 88 999 888888 77 0 5 2 4 333333333333333333333333333333 8 6 0 55 0 22222222 0 9 99999 9 2 8888 4 0
consensus : TTCCATCCATAATACTCAATGTTTAAAAACTAAAAA---AAC---TTTTTACTTTCATTTTCCACATTAAATTCTGGATTCAATCCCAAA-T----T-T-T-AGGAACTTTTACCGTATATT-TTTT-CAGTTTTGGT------GTATTTTATAAGTATACC-----CCCTCTCTGTCCAAAGTACAATAATCTGACTCAAGTCTTCCATATTCATTTGGTTATTTTTTTTATTCATTT--CTTACAAAACATCTATTGTTATATACTAGTAAGTAGACAAAACATTGGAGATTA----------CAAATATGGCAAGAATATTTCATTACAGGATCAGAA-A---AA--AATGTATG-------TTAGATCTTCATATTCATTNATATCATAAAATGGGCATTTTACTTGTCATTTTAAAATA--TATAACA--TATTGCAATAAGTAATCCTGACATCAAAATATAAAACGTACAGTAG-AAAAAGCACATTNA-CTTTTTTAATACATCAACTGATAATGCAAAAATACCAATATATTA----AACTTATACCGTCGT-AAAA-TTAAAAACA-ATAGAATATTATA-CCCCTACCCCCTTTTTGACTTTTGCCAATTTTGCCAATTTTCGAATATTAACATGTTACAATACGTTGTCCC-GACATCAAATTATAAAACATACCATAGAAAAAGTATATCATCTTTCTTAATACATCAGCTGACAATGT-NA-AATACTNA------TACATCAAACTT--TCACC----ATCTAAAACNT---------C-------TAGAATATTGTACCCCTACCCCATTTCGGCTTTTTGCCAATTTTG-CAATTTC-AAGGGTTTCATGTTACAATTAGTTA-----GCCTGATATCAAATACTAGGTACGGCAGATCAAGCAAATTATCCTTCT---TAC---TATATCAATTATNTAGACTTTCTTCTGAAAAAAAAAACAACAA---CTAGTTTTGGGTTTACATCCGCCAATGTATGTCTGACGTTTGTCAGTATTTTGTCAATTCACATACAAATAACCACCGAGTCCCTTTTTCATTTCCCCAACACAATTTAAATGTCACTGNAAAGGGACATACAGCAACATTTACACGTAG--TAAGACTGGAATCTGGAAAGTCAACGATTCTCCGACCACACTGAGC-T----GTCTAACATGAACGTTCTACATTTTAACCCAGATTAAGGTTATCAAAAACAGGCAATCGTCATTATCCCACA--ATC-TTNATTC-TTA-AA-AATATGACCACCGACGTAACAGTGATCAATTAATTCACGCGACCGTAAAACATTGTGT-TT-TNAGACGATTTATTCGTGA-AA-TGTCACGA--AAATCACGAAT-GATA---ATATTT----------T---GG---TAACTCGTGT-GTAGAAA-ATT--AAGTCTNNATCGTCTTCGACGCTCGCTTTTT----C-TAAGAAAA----GCC-TA--AGAAAAGCAAGCGTCGCAGAT-GATCAA-G--AC-TAAAA--AAT-AGGGGANT--T--CCCAAGTTACGGACTTATCCGAAGTTACCCGA---TTTT-TTCCGATTTCGTTATGGACGGAATAC
Reference ( family-266 ) : TTCCATCCGTAATACTCAATGTTTAAAAACTAAAAA---AAN---TTTTTACTTTCATTTTCCACATTAAATTCTGGATTCAATNCCAAA-T----T-T-T-AGGAACTTTTACCGTATATT-TTTT-CAGTTTTGGT------GTATTTTATAAGTATACC-----CCCTCTCTGTCCAAAGTACAATAATCTGACTCAAGTCTTCCATATTCATTTGGTTATTTTTTTTATTCATTT--CTTACAAAACGTCTATTGTTATATACTAGTAAGTAGACAAAACATTGGAGATTA----------CAAATATGGCAAGAATATTTCATTACANGATCAGAA-A---AA--A----ATN-------TTAGATCTTCATATTCATTTATATCATAAAATGGGCATTTTACTTGTCANTTTAAAATATTTATGACA--TGTTGCAATACGTTGTCCTGACATCAAAATATAAAACGTACCGTAG-AAAAAGCATATTCATCTTTCTTAATACATCAACTGACAATGCAAAAATACCAATACATCG----AACTTATACCGTCGT-AAAACTTAAAAACAAATAGAATATTGTA-CCCCTACCCCCTTTCTGACTTTTGCCAATTTTGCCAATTTCCGAANNTTAACATGTTACAATACGTTGTCCC-GACATCAAATTATAAAGCATACCATAGAAAAAGTATATCATCTTTCTTAATACATCAGCTGACAATGT-AA-AATACTTA------TACATCAAACTT--TCACC----ATCTAAAACTT---------C-------TAGAATATTGTACCCCTACCCCATTTCGGCTTTTTGCCAGTTTTGCCAATTTCTAAGGGTTTCATGTTACAATTAGTTA-----GCCCGATATCAAATACTAGGTACGGCAGA--AAGT-AATCATCCTTCT---TAC---TATATCAATTATNTAGACTTTCTTCTGAAAGGAAAAANAACAA---CTAGTTTTGGGTTTACATCCGTCAATGTATGTCTGACGTTTGTCAGTANTTNGTNAATTNACATACAAATNACNACCGAGTCCCTNTTTCATTTCCCNAACACAATTCAAAT-TCACTGTAAAGNGACATACAACAACATTTACACGTAG--TAAGACTGGAATCTGNAAAGTCAACGATTCTCCGACCACACTGA-C-T----GTCTAACATGAGCGTTCTACATTTTAACCCAGATTAAGGTTATCAAAAACAGGCAATCGTCATTATCCCACA--ATC-TTNNTTC-TTA-AA-AATATGACCACCGACGTAACAGTGATCAATTAATTCACGCAACCGTAAAACATTGTGT-TT-TNAGACGATTTATTCGTGA-AA-TGTCACGA--AAATCACGAAT-GATA---ATATTT----------T---GG---TAACTCGTGT-GTAGAAA-ATT--AAGTCTNGATCATCTTCGACGCTCGCTTTTT----C-TAAGAAAA----GCC-TA--AGAAAAGCAAGCGTCGCAGAT-GATCAA-G--AC-TAAAA--AAT-AGGGGANT--T--CCCAAGTTACGGACTTATCCGAAGTTACCCGA---TTTT-TTCCGATTTCGNTATGGACGGAATAC
gi|1 : TTCCATCCATAATACTCAATATTTGAAATCTAAAAA---AAC---CTTTTACATTCATTTTACACATTAAATTTTGGATTAAATCCCAAA-T----T-T-T-AGGAACTTTTATCATATATT-TCTT-CAGTTTTGGT------GTATTTTATAAGTATACC-----CCCTCTTTGTCCAAAGTACAATAATCTGACTCAAA-CTTCAATATTCATTTGGTTATTTTTCTTATTTATTT--CTAACAAAAAATCTGTTGTTATATACTAGTAAGTAAACAAAAAATTGGAAATTA----------CAAATATGGCAAGAATATTTCATTACAGGATCAGAA-A---AA--A----AAAAAAAAAATTAGATCTTCATATTGATTAATATTATAAAATGGGCATTTTACTTGTCCTTTTAAAATATTTATAACA--AATTGCAATAAGTAATCCTGACATCAAAATATAAAACATACAGTAG-AAAAAGCACATGGAACTTTTTTAATACATCAATTAATATTGCAAAAATACCAATATATTA----AACTTTTACCGTCAT-AAA--TTAAAAACATATAGAATATAATA-ACCCTACCCCCTTTTTAACTTTTGCCAATTTTGCCAATTTTCGAATATTAACATGTTGCAATACGTTGTCCC-GACATCAAATTATAAAATATACCAGAGAAAAAGTATATCATCTTTCTTAATACATCAGCTGACAATGTAAA-AATACTAA------TACTTCAAACTA--TTACC----ATCTAAAACAT---------C-------TAGAACATTGTACCCCAACTTCATTTTGGCTTTTTGCCAATTTTGATAATTTCAAAGGGTTTCATGTTACAATGAGTTACCAATACCTGATATCAAATACAAGGCACACCAGATCAAGCAAATTATCCTTCT---TAC---TATATCAATTATAAAGATTTTCGTCT----ACAAAAACAACAA---CTAATTTTGTGTTTACATCCGCCAATGTGTGTCTGCCATTTGTCAGTATTTTGTCATTTCACATACAAATAACCACCAAGTCGCTTTTTCACTTCCCCAACACAATTTAAATGCCACTGGAAAGGGACATACAGAAACATTTACACGTAG--TAAGACTGGAATCAAGAAAGTCAATGATTCTTCGACCTCACTGAGC-TCACAGTCTAAAATGAACATTCTACATTTTAACCCAGATTAAGGTTATCATAAACAGGCAATTGCCACTATCCCACA--ATC-TTAATCC-TTA-AACAATATGACCACCGACATAACAGTGTTCAATTAATTCATGCATCCGTAAAACGTTGTGT-TT-TAAGACGATTTATTCGTGA-AA-TATCATTA--AAATCAAGAAT-GATA---ATATTC----------T---GG---TAACTTGTGT-GTAGAAA-ATT--AAGTCTAAATCATCTTTGATGCTTGCTTTTT----CATAAGAAAA----GCC-TA--AGAAAACCAAGCATTCCAGGT-GATCAA-G--AT-TAAAA--AATCAGGAGATT--TCCCCCAAGTTACAGCCTTATGCGAAGTTACCTGA---TTTT-TTCCAATTTTGATATGGACGAAATAC
gi|10 : TTCCATGTGTAACGCTCAATGTT-AGAAACTAAAAA---AAAAAATTTTTATTTTCATTTTCCACAATCAATTCTGAATACAAC-----A-T----T-T-T-AGGAACATTTAACGTATATTCTTTT-TAGTTTTGGT------GTATTTTATA------CA-----CCCTCTCGGTCCAAAGTACAAGAAAGTGACAGAAGCTTTTCATACTCAGTTGTTTA-TTTTTTTATTCCTTT--CTTACAAATCATATA---TTATACACtt
gi|11 : aCAAAT-GAAA---ATA------------------A---CAACTAGTGT---AGAAA--------GTC---ATCATC---GACGCATGCCTTTT----CCTAAAAAAAAGAGNNN-NN--NNNNNNNNNNNNNNNNNNNNN-NNNNNN-N--NN-TAGAT--ATT-AGGGGAAT--T--CCTAAGTTACGAACTTATCCGAAGTTACCAGA---TTT
gi|12 : aatattgtacccctagtcTCCATCCATAATACTCAGTGTTTAAAAACTAAAAAGAAAAT---TTTTTACATTCATTTTCCACTTTATATTCTGGATTCAATCCCAAAGT----T-T-T-AGGAATTTTTACTGTATATC-TTTT-CAGTTTTGGT------GTATTTTcgttatatatggaa
gi|13 : aaAGATAA----GTC-TA--AGAAAAGCGAGCGTTCCAGAT-GATCAA-G--TC-TAAAAAAAAT-AGGGGAGT--T--TCCAAGTCACGGACTTATCCGAAGTTGCCCGATTTTTTT-TTCTGATTTCGTTATGGACAGAATAC
gi|14 : agtAGTCTCTATCAT-TTCGACGTTCG-TTTTT----C-T-------------C--------AAAGCAAGCTTCGGAGAT-GATCAA-G--AC-T--------T-AGGGAAAT-----CCCACGATACGGATTTAACCGAAGTTATCCGA---TTTT-T
gi|15 : --AAGTCTTGCTCATCCCCGACGCTTGCTTT--------TAAAAACC----GCT-TATCTTTAATCCAAGCGTCGCAGAT-GA-CAACG--AT-TAatgca
gi|16 : acaaaAGTCTAGATCTTCTGCAGCGCTTGATTTTCAAGAC-TTAGAAAA----AAAATT--AGAAAAACAAGCGTCCCTAAT-GATC
gi|17 : TATTGTTATATACCATTAA-TAGACAAAACATTATAGATTA----------CACATAAGACAAGTATAGTTTATAACAAGATCAGAta
gi|18 : aAA--AAT-AGGGGAAT--T--CCCAAGTTACAGACTTTTCCAAAGTTA-CTGT---TTTT-TTCCGATTTCATTATGGACGGAATA
gi|19 : ATTCTTCTGACTACATGTATATCAATTATCTAGACTTTCTTCTGAAAAAAAA
gi|2 : tTTCCATTCATTATACTCAGTGTTGAAAAACTAAAAA---CTC---TTTTTACTGTCTTTTAACACTTTAAATTCTGAATTCAATCCTAAA-T----T-T-TTAGGAACTTTTATCGTATATT-TTTTTCAATTTTGGT------TTATTTTACAAGTATACC-----CCCTCTGTGTGTAAGGTACAATATTCTGACTCAAGTCTTCCATATTCGTTT---T-TTTTTTTTATTAATTT--CTTACAAAACATCTTTTCTTATATACTAGTAAGTAGGCAAAACATTGGAGATTATAACAAAATACAAATACGGCACGAATATTCTATTTTATAATCAGAA-A---AA--A----ATA-------T-AGATCGTCATATGCATTAATAT---AAAATGGGCATTTTATTTGTCACTTTAAA-----TATGACA--TATTGTAATAC----TCCTGACATCAAAATATAAAAGGTACAGTAG-AGAAAGCACATTAA-CTGTTTTAATACATCAACTGATAATGCAAAAATACCAATATATCA----AACTTATACCGTC---AAAAATTAAAAACAAATAGAATATTATA-CCACTACAACCGTTTTGACTTTTGCCAAATTTGCCAATTTTCGAAATTTAACATGTTACAATACGTCGCCCT-GACATCAAACTATAAAATATACCACAGAAAAAGT-CATCATCTTTCCTAATACATCAGCTGAAAATGT-GACAATATTTA------TACATCAAAGTTCATCA-C----AT-TGAAACAA---------T-------TAGAATATTGTACCCCTACCCCATTTTGGCTTTTTGTCAGTTTTG---------AAGGGTTTCATGTTACAATTAGTTA-----GCCTTTTATCAATTACTAGGTATGGCAGA-------------CCTTCA---TAC---TATATCAGTTATATAAACTTTCTTCTGAAAAAAAAAACAACAACATCTAGTGTTTGGTTTACATCCGCCAATGTATAT
gi|2 : AAAACAATTCAAAT-TCACTGGAAAGAGACATACAGTAATATTTACACATAG--TAAGACTGGAATCTAGAAAGTCAAACACTCTCCGACCATACTGA-CCT----GTCTAACATGATTG------ATTTTAA--------------A-CAAAAACAGGAAATCGTCATTAT---ACA--ATC-TGTATTC-TTTTAA-AATATGACCACCGACGAAACAGTGATCAATTAATTCATGCAACCGTTAAACATTGTGG-TT-TTAGACGATTTATTCGTGA-AA-TGTCATGA--AAATCACGAAT-GATA---CAATTT----------T---GA---AAACTGGTGT-GAAGAAA-ATTAAAAGTCTTAATCATTTTCAACGCTTGATTTTT----T-TAATAAAA----TAC-TA--AGAAAAGCAAGCGTCCCAGAT-GATCAA-G--GCTTAAAA--CAT-AGGGAATT--T--TCCAAGTTACGAACGTGTCCGAAGTTACCC-----TGTT-TTCCGATTTAATCATAGACGAAaaaaacaattcaaattcactggaaagagacatacagtaatatttacacatagtaagactggaatctagaaagtcaaacactctccgaccatactgacctgtctaacatgattgattttaaacaaaaacaggaaatcgtcattatacaatctgtattcttttaaaatatgaccaccgacgaaacagtgatcaattaattcatgcaaccgttaaacattgtggttttagacgatttattcgtgaaatgtcatgaaaatcacgaatgatacaattttgaaaactggtgtgaagaaaattaaaagtcttaatcattttcaacgcttgatttttttaataaaatactaagaaaagcaagcgtcccagatgatcaaggcttaaaacatagggaattttccaagttacgaacgtgtccgaagttaccctgttttccgatttaatcatagacgaa
gi|3 : ttccattcattatactcagtgttgaaaaactaaaaactctttttactgtcttttaacactttaaattctgaattcaatcctaaatttttaggaacttttatcgtatatttttttcaattttggtttattttacaagtataccccctctgtgtgtaaggtacaatattctgactcaagtcttccatattcgttttttttttttattaatttcttacaaaacatcttttcttatatactagtaagtaggcaaaacattggagattataacaaaatacaaatacggcacgaatattctattttataatcagaaaaaaatatagatcgtcatatgcattaatataaaatgggcattttatttgtcactttaaatatgacatattgtaatactcctgacatcaaaatataaaaggtacagtagagaaagcacattaactgttttaatacatcaactgataatgcaaaaataccaatatatcaaacttataccgtcaaaaattaaaaacaaatagaatattataccactacaaccgttttgacttttgccaaatttgccaattttcgaaatttaacatgttacaatacgtcgccctgacatcaaactataaaatataccacagaaaaagtcatcatctttcctaatacatcagctgaaaatgtgacaatatttatacatcaaagttcatcacattgaaacaattagaatattgtacccctaccccattttggctttttgtcagttttgaagggtttcatgttacaattagttagccttttatcaattactaggtatggcagaccttcatactatatcagttatataaactttcttctgaaaaaaaaaacaacaacatctagtgtttggtttacatccgccaatgtatataAAGTATATC-----CC-TCCCTGTCCAAAGTACAATAATCTGACTCAAGTCTTCCATATTCATTTGGTTACTTTT-TTATTCATTT--CTTACAAAACATATATTGTTATATACTAGTAAGTAGACAAAACATTGGAGATTA----------CAAATATGGCAAGATTATTTCATTACAGGATCAGAA-A---AA--AATGTATG-------TTATATCTTCATATTCATTCATATCATAAAATGAGCATTTTACTTGTCAATTTAAAA----TATAACA--TATTGCGATAAGTTATCCTGACGTCAAAATATAAAA
gi|3 : AAAATAT-AACATATTGCGATAAGTTATCCTGACGTCAAAATATAAAAG------GAAT-CTATAACCCCAACCCCCTTTCTGACTTTTGCCAATTTTG-----------------GCATGTTACAATACATTGTCCCTGGCATCAAATTATAAAACATACCATAGGAAAAGTATATCATCTTTCTTAATACATCAGCTGACAATGT-TA-AATACTTATACATGTACATCAAACTT--TTACCATCGATCTAAAACTTGAAAAAAAAC--------AGAATATTGTACCCGTACCCCATTTCGACTTTTTGCCAATTTTGCCAATTTCTAAGGGTTTCATGTTACAATTAGTTA-----GCCTGATATCAAATACTAGGTACAGCAGGTCAAGTAAATTATCCTTCT---TAC---TATATCAATTATCTAGACTTTCTTCT----GGAAAAAAACCAA---CTAGTTTTGGGTTTGCATCCGTCAATGTATGTCTGACGTTTGTCAGTATTTTGTCAATTCATATACAAATTACGACCGAGTCCCTATTTCATTTCCCGAACA------------CACTGTAAAGTGACATACAACAACATTTACATGTAGTATAAGACTGGAATCTGAAAAGTCCACGATTCTCC-------------------GTCTTACATCAATGATCTACATTTTAACCCAGATTAATGTTATC-AAAACAGGCAATCGTCATTATCCCACA--ATC-TTCATTCTTTA-AA-AATATGACCACCGACATAACAGTGATCAATTAATTCATCCAACTGTAAAACATTATAT-TT-TAAGACAATTTATTCATGA-AA-TGTCAAGA--AAATTACTAAT-GATA---ATATTT----------T---GG---TAACTCGTGT-GTAGAAA--------------ATCGTCTTCGGCGCTTGCTTTTTC---C-TAAGAAAA----Gggaatctataaccccaaccccctttctgacttttgccaattttggcatgttacaatacattgtccctggcatcaaattataaaacataccataggaaaagtatatcatctttcttaatacatcagctgacaatgttaaatacttatacatgtacatcaaacttttaccatcgatctaaaacttgaaaaaaaacagaatattgtacccgtaccccatttcgactttttgccaattttgccaatttctaagggtttcatgttacaattagttagcctgatatcaaatactaggtacagcaggtcaagtaaattatccttcttactatatcaattatctagactttcttctggaaaaaaaccaactagttttgggtttgcatccgtcaatgtatgtctgacgtttgtcagtattttgtcaattcatatacaaattacgaccgagtccctatttcatttcccgaacacactgtaaagtgacatacaacaacatttacatgtagtataagactggaatctgaaaagtccacgattctccgtcttacatcaatgatctacattttaacccagattaatgttatcaaaacaggcaatcgtcattatcccacaatcttcattctttaaaaatatgaccaccgacataacagtgatcaattaattcatccaactgtaaaacattatattttaagacaatttattcatgaaatgtcaagaaaattactaatgataatattttggtaactcgtgtgtagaaaatcgtcttcggcgcttgctttttcctaagaaaag
gi|4 : aagtatatccctccctgtccaaagtacaataatctgactcaagtcttccatattcatttggttacttttttattcatttcttacaaaacatatattgttatatactagtaagtagacaaaacattggagattacaaatatggcaagattatttcattacaggatcagaaaaaaatgtatgttatatcttcatattcattcatatcataaaatgagcattttacttgtcaatttTAATACGAAATGTTTAAAACCTAAAAT---T-C---TTTTTACTGTCATTTTCCACATTAAATGTTGGATTCAGTACCAAA-TAAATTAT-T-AAGAACATTTACCGTATATT-TTTC-CAGTTTCGGT------GTAATTTATTAGTTTACCGTGCCCCCTCTCTGTCCAAAGTACAAAAATCTGACCCAAGTCTTCCATATTCATTTGGTTATATTTTTTATTCATTT--CTTACAAAATGTCTATAGTTATATACTAGTAAGTAGACAGTACAATAGAGATTA----------CAAATATTACAAGAATATTTCATTACAGGACCAGAATA---AA--AATGTATG-------TTAGATCTTCATATTCATTTATATTATATAATGGGTATTTTACTTGTCATTTTGAAATA------ACACTTTTTGCAATAAGTAATCCTGACATCAAAATATAAAATGTACAGTAGAAAAAAGCATATTTA-CTTT-TTAATACATCACCTGATAATGCAAAAATAACAATA
gi|4 : gaGAATATTAATATGTTACAATACATTGTCCC-GACAACAAATTATAAAGCAAATCATAGAAAAAGTATATCATCTTTCTTAATACATCAAGTGACAATGC--A-AATACTAA------TACATCAAACTT--ACACG----ATCTAAAACTT---------CAAAAACTTAGAATATTGTACCCCTAacaataacattaacaagaatattaatatgttacaatacattgtcccgacaacaaattataaagcaaatcatagaaaaagtatatcatctttcttaatacatcaagtgacaatgcaaatactaatacatcaaacttacacgatctaaaacttcaaaaacttagaatattgtaccccta
gi|5 : gataatacgaaatgtttaaaacctaaaattctttttactgtcattttccacattaaatgttggattcagtaccaaataaattattaagaacatttaccgtatatttttccagtttcggtgtaatttattagtttaccgtgccccctctctgtccaaagtacaaaaatctgacccaagtcttccatattcatttggttatattttttattcatttcttacaaaatgtctatagttatatactagtaagtagacagtacaatagagattacaaatattacaagaatatttcattacaggaccagaataaaaatgtatgttagatcttcatattcatttatattatataatgggtattttacttgtcattttgaaataacactttttgcaataagtaatcctgacatcaaaatataaaatgtacagtagaaaaaagcatatttactttttaatacatcacctgataatgcaaaaataacaataacaataacattaacaaAAATTATAA---CTAGTTTTAGGTTTACATCCGTCAATGTATGTCTGACATTTGTCAGTAATTAATAAATTGACATACAAATAACCACCGAATCCCTTTTTCATTTCCCCAGCACAATTTAAATGTCACTGTTAAGGGACATACAACCACATTTACACGTAG--TAACACTGGAATCTGTAAAGTTAACGATTCTCCGACTACACTGAGC-T----GTCTAGCATAAGCGTTCTACATTTTAA-CGAGATTAAGGTTATCAAAAACAGGTAATCTTCATTATCCCACA--CTCGTTATTTT-TTA-AA-AATATGACAATCGACATAACAGTGATCACATAATATATGCAGCCATAACACATTGTGT-TT-TACGACCATTTAATAGTAA-AA-TTTTACGA--AAATCACGAGT-GATA---ATATTG----------T---GG---TAATTCGTGT----AAAA-ATGAAAAGTCTAAATCATCTTCGACGCTTGCTTTTTCC--C-TAAGAAAA----GTC-TT--AGAAATGCGAGCGTCATAGAT-GATCAA-G--AT-TAAAA--AAT-AGGGGA-T--T--CCAAAGTTACGTTTTTATCCGAAGTTCCCCGA---TTTTATTCCGATTTATTTATGGACGGAATAC
gi|6 : ataacaccaaatcTTCCGTCCACAATACTCAATGTTTAAAAACTGAAAA---AAA---TTCTTACTTTCACTTTCCACATTAAATTC------------CAAA-T----T-TAT-AGGAACTTTTACAGTATATT-TTTA-CAGTTTTCGTATACATGTATTTCATAAGTATGCC-----CTCTCTCTGCCCAAAGTACAATATTCTGACTCA-GTCTCTCATATTCATTT--------TTTTTAT--ATTTAACTCACAGA----CCATTGTTATATACAGGTAAGTAAACTAAAAATTGGAGATTA----------CAAATATGGCAAGAATATTTCATAACATGATCAGAA-ATTTAGTTT----ATG-------TGAGATCTTCATATTCATTTATAACATAAAATTGGCATTTTACATGTC
gi|7 : -T----GTTTAACATGAACATTCTTTATTTTAACACAGATTTAGGTAAACAAAAACAGACAATCGTCATTATTCCACA--TTT-TTTATTC-TAT-AA-AGCATGACCGCCGGCATAACAG-GATC----ACTTCACA-----GTAACATATTGTGT-TT-TTAGGCAATTTATTTGGGA-AA-TGTAACGA--AAATCATGAAT-AAGA---ATATTT----------T---GA---TTAT---TGT-GTAAAAA-AATAAAAGTCTAAAGCGTCCTGGATGATC-------------------AA----GCC-TT--A-AAAAATAAG----GGAAAT-TTCCAA-GTTAC---------------GGATTCAT--CCGAAGTTATCGATTT-------------------TTT----CCGATTCCGATATGGACGGAATGC
gi|8 : gtACATTTTAACTCGTGTTTTGGTTA-CTAAAACGTGCAGTCGTCA--ACCTCACACTACC-CTTCTTC-TTA-AC---CATGACCACCTACATAACG--------------CACGCGATCTTAAAACGTGGTAT-TTCTAAAACGATTTATTCGAGATAC-TCTCGCGA--AAATCACG--TCGACAGCCATATTT----------T---TGACATAAC----------GGGA-GT----AGTTTTTATCAT-TTCGACGTTCGCTTTTC----T-CGAG----------------------GTAAGCGTCGCAGATAAATCAA-G--AC-T--------T-AGGGGAGT--T--CCCATGTAACAGATTTA----A------TCGA---TTTT-TGCCGATTCCc
gi|9 : ACCGACG--ACATT-ATCAATAAACACACGTGACCTTAAA-CATTGTGTATC-TTAGACGATTTCTTCGTAA-AACTGTCACGAGAAAATCACGAAC-GGCAGCCATACTTGGCTCATCACTAAAGG---TATCTCTTGTCGTAAAAAGAGT--A-GTTTGTGTAGTTTT-GATGTTCGCCTTT---------------------C-TA--A---AAGCAAACGTTTCAGAT-AATCAA-G--AC-TCGGA--A------GGAAT--T--CCAAAGTTACGGATTTATCCGAAGTTATCTGC---TTTT-TGCCGATTTCGTTAaactttgtcagtatgatcaacactaca
Alignments
lowQualScore : 222222222 1111 111111 11111 111111 2222222222 11111 555555 11 1 1 2222 2222 1 33333 1 1 11111 222222 11 22222 666666666666666666 5555555555 33333 111 111 1111 111 11 1111 1 111 2222222222222222222 111 333333 555555555555555555555555555555 22222222 111111
lowQualScore : 3 777777777 6 6 4444 6 6 6 6 6 999999 66666 1 222222 1 1 99 44 9999999999 1 8 8 1 88888 0 1 6 1 000000 33 2 3 3 3 1 3 7 22 8888 8888 3 11111 7 3 6 77 0 0 3 55555 1 888888 33 8 33333 1 999999999999999999 0 8888888888 33333 0 7 3 777 777 1 5555 9 777 0 0 2 0 99 1 0 0 33 0 0 2 444 7777 6 77 3 1 3 1 1 99 1 6 6 6 6 33 222 5555 1 33 5 5 1 5 5 77 5 1 777 5555555555555555555 77 333 777777 77 2 2 0 0 1 555555555555555555555555555555 3 3 4 55 4 00000000 4 4 66666 0 3 000000 4 1
lowQualScore : . ......... . . .... . . . . . ...... ..... . ...... . . .. .. .......... . . . . ..... . . . . ...... .. . . . . . . . .. .... .... . ..... . . . .. . . . ..... . ...... .. . ..... . .................. . .......... ..... . . . ... ... . .... . ... . . . . .. . . . .. . . . ... .... . .. . . . . . .. . . . . . .. ... .... . .. . . . . . .. . . ... ................... .. ... ...... .. . . . . . .............................. . . . .. . ........ . . ..... . . ...... . .
lowQualScore : 2 222222222 7 7 2222 7 7 7 7 7 222222 77777 7 000000 7 0 22 55 2222222222 0 0 0 4 22222 6 0 4 2 555555 88 5 5 7 3 0 3 3 88 3333 7777 3 33333 3 3 7 00 0 8 2 22222 0 888888 88 8 88888 0 888888888888888888 7 7777777777 33333 7 3 7 555 555 0 5555 8 555 2 7 5 8 55 0 2 2 88 2 2 5 000 0000 0 77 7 7 5 7 0 22 0 7 7 7 7 11 999 9999 9 00 7 7 0 7 7 99 0 0 555 6666666666666666666 88 999 888888 11 5 0 5 2 4 777777777777777777777777777777 8 6 0 55 0 22222222 0 9 99999 9 2 111111 0 7
consensus : TTCCATCCATAATACTCAATGTTTAAAAACTAAAAA---AAC---TTTTTACTTTCATTTTCCACATTAAATTCTGGATTCAATCCCAAA-T----T-T-T-AGGAACTTTTACCGTATATT-TTTT-CAGTTTTGGT------GTATTTTATAAGTATACC-----CCCTCTCTGTCCAAAGTACAATAATCTGACTCAAGTCTTCCATATTCATTTGGTTATTTTTTTTATTCATTT--CTTACAAAACATCTATTGTTATATACTAGTAAGTAGACAAAACATTGGAGATTA----------CAAATATGGCAAGAATATTTCATTACAGGATCAGAA-A-AAAATGTATG---TTAGATCTTCATATTCATTNATATCATAAAATGGGCATTTTACTTGTCATTTTAAA--AT--ATAACA--TATTGCAATAAGTAATCCTGACATCAAAATATAAAACGTACAGTAG-AAAAAGCACATTNA-CTTTTTTAATACATCAACTGATAATGCAAAAATACCAATATATTA----AACTTATACCGTCGT-AAAAT-TAAAAACA-A-TAGAATATTATA-CCCCTACCCCCTTTTTGACTTTTGCCAATTTTGCCAATTTTCGAATATTAACATGTTACAATACGTTGTCCC-GACATCAAATTATAAAACATACCATAGAAAAAGTATATCATCTTTCTTAATACATCAGCTGACAATGT-NA-AATACTNATACAT------CAAACTT--TCACCATC----TAAAACNT---------C-------TAGAATATTGTACCCCTACCCCATTTCGGCTTTTTGCCAATTTTG-C-AATTTC-AAGGGTTTCATGTTACAATTAGTTA-----GCCTGATATCAAATACTAGGTACGGCAGATCAAGCAAATTATCCTTCT---TAC---TATATCAATTATNTAGACTTTCTTCTGAAAAAAAAAACAACAA---CTAGTTTTGGGTTTACATCCGCCAATGTATGTCTGACGTTTGTCAGTATTTTGTCAATTCACATACAAATAACCACCGAGTCCCTTTTTCATTTCCCCAACACAATTTAAATGTCACTGNAAAGGGACATACAGCAACATTTACACGTAG--TAAGACTGGAATCTGGAAAGTCAACGATTCTCCGACCACACTGAGCT----GTCTAACATGAACGTTCTACATTTTAACCCAGATTAAGGTTATCAAAAACAGGCAATCGTCATTATCCCACA--ATCTTTA-TTC-TTA-AA-AATATGACCACCGACGTAACAGTGATCAATTAATTCACGCGACCGTAAAACATTGTGT-TT-TNAGACGATTTATTCGTGA-AA-TGTCACGA--AAATCACGAAT-GATA---ATATTT----------T---GG---TAACTCGTGT-GTAGAAA-ATT--AAGTCTNNATCGTCTTCGACGCTCGCTTTTT----C-TAAGAAAA----GCC-TAAGA--AAAGCAAGCGTCGCAGAT-GATCAA-G--AC-TAAAA--AAT-AGGGGANT--T--CCCAAGTTACGGACTTATCCGAAGTTACCCGA---TTTT-TTCCGATTTCGTTATGGACGGAATAC
Reference ( family-266 ) : TTCCATCCATAATACTCAATGTTTAAAAACTAAAAA---AAC---TTTTTACTTTCATTTTCCACATTAAATTCTGGATTCAATCCCAAA-T----T-T-T-AGGAACTTTTACCGTATATT-TTTT-CAGTTTTGGT------GTATTTTATAAGTATACC-----CCCTCTCTGTCCAAAGTACAATAATCTGACTCAAGTCTTCCATATTCATTTGGTTATTTTTTTTATTCATTT--CTTACAAAACATCTATTGTTATATACTAGTAAGTAGACAAAACATTGGAGATTA----------CAAATATGGCAAGAATATTTCATTACAGGATCAGAA-A-AAAATGTATG---TTAGATCTTCATATTCATTNATATCATAAAATGGGCATTTTACTTGTCATTTTAAAATAT--ATAACA--TATTGCAATAAGTAATCCTGACATCAAAATATAAAACGTACAGTAG-AAAAAGCACATTNA-CTTTTTTAATACATCAACTGATAATGCAAAAATACCAATATATTA----AACTTATACCGTCGT-AAAAT-TAAAAACA-A-TAGAATATTATA-CCCCTACCCCCTTTTTGACTTTTGCCAATTTTGCCAATTTTCGAATATTAACATGTTACAATACGTTGTCCC-GACATCAAATTATAAAACATACCATAGAAAAAGTATATCATCTTTCTTAATACATCAGCTGACAATGT-NA-AATACTNATACAT------CAAACTT--TCACCATC----TAAAACNT---------C-------TAGAATATTGTACCCCTACCCCATTTCGGCTTTTTGCCAATTTTG-C-AATTTC-AAGGGTTTCATGTTACAATTAGTTA-----GCCTGATATCAAATACTAGGTACGGCAGATCAAGCAAATTATCCTTCT---TAC---TATATCAATTATNTAGACTTTCTTCTGAAAAAAAAAACAACAA---CTAGTTTTGGGTTTACATCCGCCAATGTATGTCTGACGTTTGTCAGTATTTTGTCAATTCACATACAAATAACCACCGAGTCCCTTTTTCATTTCCCCAACACAATTTAAATGTCACTGNAAAGGGACATACAGCAACATTTACACGTAG--TAAGACTGGAATCTGGAAAGTCAACGATTCTCCGACCACACTGAGCT----GTCTAACATGAACGTTCTACATTTTAACCCAGATTAAGGTTATCAAAAACAGGCAATCGTCATTATCCCACA--ATCTTNA-TTC-TTA-AA-AATATGACCACCGACGTAACAGTGATCAATTAATTCACGCGACCGTAAAACATTGTGT-TT-TNAGACGATTTATTCGTGA-AA-TGTCACGA--AAATCACGAAT-GATA---ATATTT----------T---GG---TAACTCGTGT-GTAGAAA-ATT--AAGTCTNNATCGTCTTCGACGCTCGCTTTTT----C-TAAGAAAA----GCC-TAAGA--AAAGCAAGCGTCGCAGAT-GATCAA-G--AC-TAAAA--AAT-AGGGGANT--T--CCCAAGTTACGGACTTATCCGAAGTTACCCGA---TTTT-TTCCGATTTCGTTATGGACGGAATAC
gi|1 : TTCCATCCATAATACTCAATATTTGAAATCTAAAAA---AAC---CTTTTACATTCATTTTACACATTAAATTTTGGATTAAATCCCAAA-T----T-T-T-AGGAACTTTTATCATATATT-TCTT-CAGTTTTGGT------GTATTTTATAAGTATACC-----CCCTCTTTGTCCAAAGTACAATAATCTGACTCAAA-CTTCAATATTCATTTGGTTATTTTTCTTATTTATTT--CTAACAAAAAATCTGTTGTTATATACTAGTAAGTAAACAAAAAATTGGAAATTA----------CAAATATGGCAAGAATATTTCATTACAGGATCAGAA-A-AAAAAAAAAAAAATTAGATCTTCATATTGATTAATATTATAAAATGGGCATTTTACTTGTCCTTTTAAAATATTTATAACA--AATTGCAATAAGTAATCCTGACATCAAAATATAAAACATACAGTAG-AAAAAGCACATGGAACTTTTTTAATACATCAATTAATATTGCAAAAATACCAATATATTA----AACTTTTACCGTCAT--AAAT-TAAAAACATA-TAGAATATAATA-ACCCTACCCCCTTTTTAACTTTTGCCAATTTTGCCAATTTTCGAATATTAACATGTTGCAATACGTTGTCCC-GACATCAAATTATAAAATATACCAGAGAAAAAGTATATCATCTTTCTTAATACATCAGCTGACAATGTAAA-AATACTAATACTT------CAAACTA--TTACCATC----TAAAACAT---------C-------TAGAACATTGTACCCCAACTTCATTTTGGCTTTTTGCCAATTTTGAT-AATTTCAAAGGGTTTCATGTTACAATGAGTTACCAATACCTGATATCAAATACAAGGCACACCAGATCAAGCAAATTATCCTTCT---TAC---TATATCAATTATAAAGATTTTCGTCT----ACAAAAACAACAA---CTAATTTTGTGTTTACATCCGCCAATGTGTGTCTGCCATTTGTCAGTATTTTGTCATTTCACATACAAATAACCACCAAGTCGCTTTTTCACTTCCCCAACACAATTTAAATGCCACTGGAAAGGGACATACAGAAACATTTACACGTAG--TAAGACTGGAATCAAGAAAGTCAATGATTCTTCGACCTCACTGAGCTCACAGTCTAAAATGAACATTCTACATTTTAACCCAGATTAAGGTTATCATAAACAGGCAATTGCCACTATCCCACA--ATCTTAA-TCC-TTA-AACAATATGACCACCGACATAACAGTGTTCAATTAATTCATGCATCCGTAAAACGTTGTGT-TT-TAAGACGATTTATTCGTGA-AA-TATCATTA--AAATCAAGAAT-GATA---ATATTC----------T---GG---TAACTTGTGT-GTAGAAA-ATT--AAGTCTAAATCATCTTTGATGCTTGCTTTTT----CATAAGAAAA----GCC-TAAGA--AAACCAAGCATTCCAGGT-GATCAA-G--AT-TAAAA--AATCAGGAGATT--TCCCCCAAGTTACAGCCTTATGCGAAGTTACCTGA---TTTT-TTCCAATTTTGATATGGACGAAATAC
gi|10 : TTCCATGTGTAACGCTCAATGTT-AGAAACTAAAAA---AAAAAATTTTTATTTTCATTTTCCACAATCAATTCTGAATACAAC-----A-T----T-T-T-AGGAACATTTAACGTATATTCTTTT-TAGTTTTGGT------GTATTTTATA------CA-----CCCTCTCGGTCCAAAGTACAAGAAAGTGACAGAAGCTTTTCATACTCAGTTGTTTA-TTTTTTTATTCCTTT--CTTACAAATCATATA---TTATACACtt
gi|11 : aCAAAT-GAAA---ATA------------------A---CAACTAGTGT---AGAAA--------GTC---ATCATC---GACGCATGCCTTTT----CCTAAAAAAAAGAGNNN-NNNNN--NNNNNNNNNNNNNNNNNN-NNNNNN-N--NN-TAGAT--ATT-AGGGGAAT--T--CCTAAGTTACGAACTTATCCGAAGTTACC--A------------GATTTCGTTATATATGGAA
gi|12 : aatattgtacccctagtcTCCATCCATAATACTCAGTGTTTAAAAACTAAAAAGAAAAT---TTTTTACATTCATTTTCCACTTTATATTCTGGATTCAATCCCAAAGT----T-T-T-AGGAATTTTTACTGTATATC-TTTT-CAGTTTTGGT------GTATTTT
gi|13 : aaAGATAA----GTC-TAAGA--AAAGCGAGCGTTCCAGAT-GATCAA-G--TC-TAAAAAAAAT-AGGGGAGT--T--TCCAAGTCACGGACTTATCCGAAGTTGCCCGATTTTTTT-TTCTGATTTCGTTATGGACAGAATAC
gi|14 : agtAGTCTCTATCAT-TTCGACGTTCG-TTTTT----C-T-------------C--------AAAGCAAGCTTCGGAGAT-GATCAA-G--AC-T--------T-AGGGAAAT-----CCCACGATACGGATTTAACCGAAGTTATCCGA---TTTT-T
gi|15 : --AAGTCTTGCTCATCCCCGACGCTTGCTTTT--------AAAAACC----GCT-TATCTTTAATCCAAGCGTCGCAGAT-GA-CAACG--AT-TAatgca
gi|16 : acaaaAGTCTAGATCTTCTGCAGCGCTTGATTTTCAAGAC-TTAGAAAA----AAAATTAGA--AAAACAAGCGTCCCTAAT-GATC
gi|17 : TATTGTTATATACCATTAA-TAGACAAAACATTATAGATTA----------CACATAAGACAAGTATAGTTTATAACAAGATCAGAta
gi|18 : aAA--AAT-AGGGGAAT--T--CCCAAGTTACAGACTTTTCCAAAGTTA-CTGT---TTTT-TTCCGATTTCATTATGGACGGAATA
gi|19 : TATTCTTCTGACTACATGTATATCAATTATCTAGACTTTCTTCTGAAAAAAAA
gi|2 : TTCCATTCATTATACTCAGTGTTGAAAAACTAAAAA---CTC---TTTTTACTGTCTTTTAACACTTTAAATTCTGAATTCAATCCTAAA-T----T-T-TTAGGAACTTTTATCGTATATT-TTTTTCAATTTTGGT------TTATTTTACAAGTATACC-----CCCTCTGTGTGTAAGGTACAATATTCTGACTCAAGTCTTCCATATTCGTTT---T-TTTTTTTTATTAATTT--CTTACAAAACATCTTTTCTTATATACTAGTAAGTAGGCAAAACATTGGAGATTATAACAAAATACAAATACGGCACGAATATTCTATTTTATAATCAGAA-A-AAAATATA--------GATCGTCATATGCATTAATAT---AAAATGGGCATTTTATTTGTCACTTTAAA---T--ATGACA--TATTGTAATAC----TCCTGACATCAAAATATAAAAGGTACAGTAG-AGAAAGCACATTAA-CTGTTTTAATACATCAACTGATAATGCAAAAATACCAATATATCA----AACTTATACCGTCA--AAAAT-TAAAAACA-AATAGAATATTATA-CCACTACAACCGTTTTGACTTTTGCCAAATTTGCCAATTTTCGAAATTTAACATGTTACAATACGTCGCCCT-GACATCAAACTATAAAATATACCACAGAAAAAGT-CATCATCTTTCCTAATACATCAGCTGAAAATGT-GACAATATTTATACAT------CAAAGTTCATCAC-AT-----TGAAACAA---------T-------TAGAATATTGTACCCCTACCCCATTTTGGCTTTTTGTCAGTTTTG----------AAGGGTTTCATGTTACAATTAGTTA-----GCCTTTTATCAATTACTAGGTATGGCAGA-------------CCTTCA---TAC---TATATCAGTTATATAAACTTTCTTCTGAAAAAAAAAACAACAACATCTAGTGTTTGGTTTACATCCGCCAATGTATAT
gi|2 : AAAACAATTCAAAT-TCACTGGAAAGAGACATACAGTAATATTTACACATAG--TAAGACTGGAATCTAGAAAGTCAAACACTCTCCGACCATACTGACCT----GTCTAACATGATTG------ATTTTAA--------------A-CAAAAACAGGAAATCGTCATTAT---ACA--ATCTGTA-TTC-TTTTAA-AATATGACCACCGACGAAACAGTGATCAATTAATTCATGCAACCGTTAAACATTGTGG-TT-TTAGACGATTTATTCGTGA-AA-TGTCATGA--AAATCACGAAT-GATA---CAATTT----------T---GA---AAACTGGTGT-GAAGAAA-ATTAAAAGTCTTAATCATTTTCAACGCTTGATTTTT----T-TAATAAAA----TAC-TAAGA--AAAGCAAGCGTCCCAGAT-GATCAA-G--GCTTAAAA--CAT-AGGGAATT--T--TCCAAGTTACGAACGTGTCCGAAGTTACCC-----TGTT-TTCCGATTTAATCATAGACGAAaaaaacaattcaaattcactggaaagagacatacagtaatatttacacatagtaagactggaatctagaaagtcaaacactctccgaccatactgacctgtctaacatgattgattttaaacaaaaacaggaaatcgtcattatacaatctgtattcttttaaaatatgaccaccgacgaaacagtgatcaattaattcatgcaaccgttaaacattgtggttttagacgatttattcgtgaaatgtcatgaaaatcacgaatgatacaattttgaaaactggtgtgaagaaaattaaaagtcttaatcattttcaacgcttgatttttttaataaaatactaagaaaagcaagcgtcccagatgatcaaggcttaaaacatagggaattttccaagttacgaacgtgtccgaagttaccctgttttccgatttaatcatagacgaa
gi|3 : ttccattcattatactcagtgttgaaaaactaaaaactctttttactgtcttttaacactttaaattctgaattcaatcctaaatttttaggaacttttatcgtatatttttttcaattttggtttattttacaagtataccccctctgtgtgtaaggtacaatattctgactcaagtcttccatattcgttttttttttttattaatttcttacaaaacatcttttcttatatactagtaagtaggcaaaacattggagattataacaaaatacaaatacggcacgaatattctattttataatcagaaaaaaatatagatcgtcatatgcattaatataaaatgggcattttatttgtcactttaaatatgacatattgtaatactcctgacatcaaaatataaaaggtacagtagagaaagcacattaactgttttaatacatcaactgataatgcaaaaataccaatatatcaaacttataccgtcaaaaattaaaaacaaatagaatattataccactacaaccgttttgacttttgccaaatttgccaattttcgaaatttaacatgttacaatacgtcgccctgacatcaaactataaaatataccacagaaaaagtcatcatctttcctaatacatcagctgaaaatgtgacaatatttatacatcaaagttcatcacattgaaacaattagaatattgtacccctaccccattttggctttttgtcagttttgaagggtttcatgttacaattagttagccttttatcaattactaggtatggcagaccttcatactatatcagttatataaactttcttctgaaaaaaaaaacaacaacatctagtgtttggtttacatccgccaatgtatataAAGTATATC-----CC-TCCCTGTCCAAAGTACAATAATCTGACTCAAGTCTTCCATATTCATTTGGTTACTTTT-TTATTCATTT--CTTACAAAACATATATTGTTATATACTAGTAAGTAGACAAAACATTGGAGATTA----------CAAATATGGCAAGATTATTTCATTACAGGATCAGAA-A-AAAATGTATG---TTATATCTTCATATTCATTCATATCATAAAATGAGCATTTTACTTGTCAATTTAAA--AT--ATAACA--TATTGCGATAAGTTATCCTGACGTCAAAATATAAAA
gi|3 : AAAATAT-AACATATTGCGATAAGTTATCCTGACGTCAAAATATAAAAG-------GAAT-CTATAACCCCAACCCCCTTTCTGACTTTTGCCAATTTTG-----------------GCATGTTACAATACATTGTCCCTGGCATCAAATTATAAAACATACCATAGGAAAAGTATATCATCTTTCTTAATACATCAGCTGACAATGT-TA-AATACTTATACATGTACATCAAACTT--TTACCATCGATCTAAAACTTGAAAAAAAAC--------AGAATATTGTACCCGTACCCCATTTCGACTTTTTGCCAATTTTG-CCAATTTCTAAGGGTTTCATGTTACAATTAGTTA-----GCCTGATATCAAATACTAGGTACAGCAGGTCAAGTAAATTATCCTTCT---TAC---TATATCAATTATCTAGACTTTCTTCTG--GAAAAAAAC--CAA---CTAGTTTTGGGTTTGCATCCGTCAATGTATGTCTGACGTTTGTCAGTATTTTGTCAATTCATATACAAATTACGACCGAGTCCCTATTTCATTTCCCGAACA------------CACTGTAAAGTGACATACAACAACATTTACATGTAGTATAAGACTGGAATCTGAAAAGTCCACGATTCTCC------------------GTCTTACATCAATGATCTACATTTTAACCCAGATTAATGTTATC-AAAACAGGCAATCGTCATTATCCCACA--ATCTTCA-TTCTTTA-AA-AATATGACCACCGACATAACAGTGATCAATTAATTCATCCAACTGTAAAACATTATAT-TT-TAAGACAATTTATTCATGA-AA-TGTCAAGA--AAATTACTAAT-GATA---ATATTT----------T---GG---TAACTCGTGT-GTAGAAA--------------ATCGTCTTCGGCGCTTGCTTTTTC---C-TAAGAAAA----Gggaatctataaccccaaccccctttctgacttttgccaattttggcatgttacaatacattgtccctggcatcaaattataaaacataccataggaaaagtatatcatctttcttaatacatcagctgacaatgttaaatacttatacatgtacatcaaacttttaccatcgatctaaaacttgaaaaaaaacagaatattgtacccgtaccccatttcgactttttgccaattttgccaatttctaagggtttcatgttacaattagttagcctgatatcaaatactaggtacagcaggtcaagtaaattatccttcttactatatcaattatctagactttcttctggaaaaaaaccaactagttttgggtttgcatccgtcaatgtatgtctgacgtttgtcagtattttgtcaattcatatacaaattacgaccgagtccctatttcatttcccgaacacactgtaaagtgacatacaacaacatttacatgtagtataagactggaatctgaaaagtccacgattctccgtcttacatcaatgatctacattttaacccagattaatgttatcaaaacaggcaatcgtcattatcccacaatcttcattctttaaaaatatgaccaccgacataacagtgatcaattaattcatccaactgtaaaacattatattttaagacaatttattcatgaaatgtcaagaaaattactaatgataatattttggtaactcgtgtgtagaaaatcgtcttcggcgcttgctttttcctaagaaaag
gi|4 : aagtatatccctccctgtccaaagtacaataatctgactcaagtcttccatattcatttggttacttttttattcatttcttacaaaacatatattgttatatactagtaagtagacaaaacattggagattacaaatatggcaagattatttcattacaggatcagaaaaaaatgtatgttatatcttcatattcattcatatcataaaatgagcattttacttgtcaatttATAATACGAAATGTTTAAAACCTAAAAT---T-C---TTTTTACTGTCATTTTCCACATTAAATGTTGGATTCAGTACCAAA-TAAATTAT-T-AAGAACATTTACCGTATATT-TTTC-CAGTTTCGGT------GTAATTTATTAGTTTACCGTGCCCCCTCTCTGTCCAAAGTACAAAAATCTGACCCAAGTCTTCCATATTCATTTGGTTATATTTTTTATTCATTT--CTTACAAAATGTCTATAGTTATATACTAGTAAGTAGACAGTACAATAGAGATTA----------CAAATATTACAAGAATATTTCATTACAGGACCAGAATA-AAAATGTATG---TTAGATCTTCATATTCATTTATATTATATAATGGGTATTTTACTTGTCATTTTGAA------ATAACACTTTTTGCAATAAGTAATCCTGACATCAAAATATAAAATGTACAGTAGAAAAAAGCATATTTA-C-TTTTTAATACATCACCTGATAATGCAAAAATAACAATA
gi|4 : gGAATATTAATATGTTACAATACATTGTCCC-GACAACAAATTATAAAGCAAATCATAGAAAAAGTATATCATCTTTCTTAATACATCAAGTGACAATG--CA-AATACTAATACAT------CAAACTT--ACACGATC----TAAAACTT---------CAAAAACTTAGAATATTGTACCCCTAacaataacattaacaagaatattaatatgttacaatacattgtcccgacaacaaattataaagcaaatcatagaaaaagtatatcatctttcttaatacatcaagtgacaatgcaaatactaatacatcaaacttacacgatctaaaacttcaaaaacttagaatattgtaccccta
gi|5 : gataatacgaaatgtttaaaacctaaaattctttttactgtcattttccacattaaatgttggattcagtaccaaataaattattaagaacatttaccgtatatttttccagtttcggtgtaatttattagtttaccgtgccccctctctgtccaaagtacaaaaatctgacccaagtcttccatattcatttggttatattttttattcatttcttacaaaatgtctatagttatatactagtaagtagacagtacaatagagattacaaatattacaagaatatttcattacaggaccagaataaaaatgtatgttagatcttcatattcatttatattatataatgggtattttacttgtcattttgaaataacactttttgcaataagtaatcctgacatcaaaatataaaatgtacagtagaaaaaagcatatttactttttaatacatcacctgataatgcaaaaataacaataacaataacattaacaaAAATTATAA---CTAGTTTTAGGTTTACATCCGTCAATGTATGTCTGACATTTGTCAGTAATTAATAAATTGACATACAAATAACCACCGAATCCCTTTTTCATTTCCCCAGCACAATTTAAATGTCACTGTTAAGGGACATACAACCACATTTACACGTAG--TAACACTGGAATCTGTAAAGTTAACGATTCTCCGACTACACTGAGCT----GTCTAGCATAAGCGTTCTACATTTTAA-CGAGATTAAGGTTATCAAAAACAGGTAATCTTCATTATCCCACA--CTCGTTATTTT-TTA-AA-AATATGACAATCGACATAACAGTGATCACATAATATATGCAGCCATAACACATTGTGT-TT-TACGACCATTTAATAGTAA-AA-TTTTACGA--AAATCACGAGT-GATA---ATATTG----------T---GG---TAATTCGTGT----AAAA-ATGAAAAGTCTAAATCATCTTCGACGCTTGCTTTTTCC--C-TAAGAAAA----GTC-TTAGA--AATGCGAGCGTCATAGAT-GATCAA-G--AT-TAAAA--AAT-AGGGGA-T--T--CCAAAGTTACGTTTTTATCCGAAGTTCCCCGA---TTTTATTCCGATTTATTTATGGACGGAATAC
gi|6 : ataacaccaaatcTTCCGTCCACAATACTCAATGTTTAAAAACTGAAAA---AAA---TTCTTACTTTCACTTTCCACATTAAATTC------------CAAA-T----T-TAT-AGGAACTTTTACAGTATATT-TTTA-CAGTTTTCGTATACATGTATTTCATAAGTATGCC-----CTCTCTCTGCCCAAAGTACAATATTCTGACTCA-GTCTCTCATATTCATTT--------TTTTTAT--ATTTAACTCACAGA----CCATTGTTATATACAGGTAAGTAAACTAAAAATTGGAGATTA----------CAAATATGGCAAGAATATTTCATAACATGATCAGAA-ATTTAGTTTATG---TGAGATCTTCATATTCATTTATAACATAAAATTGGCATTTTACATGTC
gi|7 : GTT----GTTTAACATGAACATTCTTTATTTTAACACAGATTTAGGTAAACAAAAACAGACAATCGTCATTATTCCACA--TTTTTTA-TTC-TAT-AA-AGCATGACCGCCGGCATAACAG-GATC----ACTTCACA-----GTAACATATTGTGT-TT-TTAGGCAATTTATTTGGGA-AA-TGTAACGA--AAATCATGAAT-AAGA---ATATTT----------T---GA---TTAT---TGT-GTAAAAA-AATAAAAGTCTAAAGCGTCCTGGATGATC-------------------AA----GCC-TTA-A--AAAATAAG----GGAAAT-TTCCAA-GTTAC---------------GGATTCAT--CCGAAGTTATCGATTT-------------------TTT----CCGATTCCGATATGGACGGAATGC
gi|8 : ACATTTTAACTCGTGTTTTGGTTA-CTAAAACGTGCAGTCGTCA--ACCTCACACTACCCTTC-TTC-TTA-AC---CATGACCACCTACATAACG--------------CACGCGATCTTAAAACGTGGTAT-TTCTAAAACGATTTATTCGAGATAC-TCTCGCGA--AAATCACG--TCGACAGCCATATTT----------T---TGACATAAC----------GGGA-GT----AGTTTTTATCAT-TTCGACGTTCGCTTTTC----T-CGAG----------------------GTAAGCGTCGCAGATAAATCAA-G--AC-T--------T-AGGGGAGT--T--CCCATGTAACAGATTTA----A------TCGA---TTTT-TGCCGATTCCc
gi|9 : ACCGACG--ACATT-ATCAATAAACACACGTGACCTTAAA-CATTGTGTATC-TTAGACGATTTCTTCGTAA-AACTGTCACGAGAAAATCACGAAC-GGCAGCCATACTTGGCTCATCACTAAAGG---TATCTCTTGTCGTAAAAAGAGT--A-GTTTGTGTAGTTTT-GATGTTCGCCTTT---------------------C-TAA-----AAGCAAACGTTTCAGAT-AATCAA-G--AC-TCGGA--A------GGAAT--T--CCAAAGTTACGGATTTATCCGAAGTTATCTGC---TTTT-TGCCGATTTCGTTAaactttgtcagtatgatcaacactaca
Alignments
lowQualScore : 222222222 1111 111111 11111 111111 2222222222 11111 22222 1 1 2222 2222 1 33333 1 1 11111 222222 11 33333 666666666666666666 555555555 33333 111 111 1111 111 11 1111 1 111 2222222222222222222 111 333333 555555555555555555555555555555 22222222 111111
lowQualScore : 3 777777777 6 6 4444 6 6 6 6 6 999999 66666 1 222222 1 1 99 44 9999999999 1 8 8 1 88888 0 1 6 1 3 22222 2 3 3 3 1 3 7 22 8888 8888 3 11111 7 3 6 77 0 0 3 55555 1 888888 33 00000 2 1 999999999999999999 0 888888888 33333 0 7 3 777 777 1 5555 9 777 0 0 2 0 99 1 0 0 33 0 0 2 444 7777 6 77 3 1 3 1 1 99 6 6 6 6 33 222 5555 1 33 5 5 1 5 5 77 5 1 777 5555555555555555555 77 333 777777 77 2 2 0 0 1 111111111111111111111111111111 3 3 4 55 4 00000000 4 4 66666 0 3 000000 4 1
lowQualScore : . ......... . . .... . . . . . ...... ..... . ...... . . .. .. .......... . . . . ..... . . . . . ..... . . . . . . . .. .... .... . ..... . . . .. . . . ..... . ...... .. ..... . . .................. . ......... ..... . . . ... ... . .... . ... . . . . .. . . . .. . . . ... .... . .. . . . . . .. . . . . .. ... .... . .. . . . . . .. . . ... ................... .. ... ...... .. . . . . . .............................. . . . .. . ........ . . ..... . . ...... . .
lowQualScore : 2 222222222 7 7 2222 7 7 7 7 7 222222 77777 7 000000 7 0 22 55 2222222222 0 0 0 4 22222 6 0 4 2 2 00000 5 5 7 3 0 3 3 88 3333 7777 3 33333 3 3 7 00 0 8 2 22222 0 888888 88 00000 5 0 888888888888888888 7 777777777 33333 7 3 7 555 555 0 5555 8 555 2 7 5 8 55 0 2 2 88 2 2 5 000 0000 0 77 7 7 5 7 0 22 7 7 7 7 11 999 9999 9 00 7 7 0 7 7 99 0 0 555 6666666666666666666 88 999 888888 11 5 0 5 2 4 333333333333333333333333333333 8 6 0 55 0 22222222 0 9 99999 9 2 111111 0 7
consensus : TTCCATCCATAATACTCAATGTTTAAAAACTAAAAA---AAC---TTTTTACTTTCATTTTCCACATTAAATTCTGGATTCAATCCCAAA-T----T-T-T-AGGAACTTTTACCGTATATT-TTTT-CAGTTTTGGT------GTATTTTATAAGTATACC-----CCCTCTCTGTCCAAAGTACAATAATCTGACTCAAGTCTTCCATATTCATTTGGTTATTTTTTTTATTCATTT--CTTACAAAACATCTATTGTTATATACTAGTAAGTAGACAAAACATTGGAGATTA----------CAAATATGGCAAGAATATTTCATTACAGGATCAGAA-A-AAAATGTATG---TTAGATCTTCATATTCATTNATATCATAAAATGGGCATTTTACTTGTCATTTTAAAATAT----AACATATTGCAATAAGTAATCCTGACATCAAAATATAAAACGTACAGTAG-AAAAAGCACATTNA-CTTTTTTAATACATCAACTGATAATGCAAAAATACCAATATATTA----AACTTATACCGTCGT-AAAAT-TAAAAACA-A-TAGAATATTATA-CCCCTACCCCCTTTTTGACTTTTGCCAATTTTGCCAATTTTCGAATATTAACATGTTACAATACGTTGTCCC-GACATCAAATTATAAAACATACCATAGAAAAAGTATATCATCTTTCTTAATACATCAGCTGACAATGT-NA-AATACTNA------TACATCAAACTT--TCACC----ATCTAAAACNT---------C-------TAGAATATTGTACCCCTACCCCATTTCGGCTTTTTGCCAATTTTG-CAATTTC-AAGGGTTTCATGTTACAATTAGTTA-----GCCTGATATCAAATACTAGGTACGGCAGATCAAGCAAATTATCCTTCT---TAC---TATATCAATTATNTAGACTTTCTTCTGAAAAAAAAAACAACAA---CTAGTTTTGGGTTTACATCCGCCAATGTATGTCTGACGTTTGTCAGTATTTTGTCAATTCACATACAAATAACCACCGAGTCCCTTTTTCATTTCCCCAACACAATTTAAATGTCACTGNAAAGGGACATACAGCAACATTTACACGTAG--TAAGACTGGAATCTGGAAAGTCAACGATTCTCCGACCACACTGAGCT----GTCTAACATGAACGTTCTACATTTTAACCCAGATTAAGGTTATCAAAAACAGGCAATCGTCATTATCCCACA--ATCTTTA-TTC-TTA-AA-AATATGACCACCGACGTAACAGTGATCAATTAATTCACGCGACCGTAAAACATTGTGT-TT-TNAGACGATTTATTCGTGA-AA-TGTCACGA--AAATCACGAAT-GATA---ATATTT----------T---GG---TAACTCGTGT-GTAGAAA-ATT--AAGTCTNNATCGTCTTCGACGCTCGCTTTTT----C-TAAGAAAA----GCC-TA--AGAAAAGCAAGCGTCGCAGAT-GATCAA-G--AC-TAAAA--AAT-AGGGGANT--T--CCCAAGTTACGGACTTATCCGAAGTTACCCGA---TTTT-TTCCGATTTCGTTATGGACGGAATAC
Reference ( family-266 ) : TTCCATCCATAATACTCAATGTTTAAAAACTAAAAA---AAC---TTTTTACTTTCATTTTCCACATTAAATTCTGGATTCAATCCCAAA-T----T-T-T-AGGAACTTTTACCGTATATT-TTTT-CAGTTTTGGT------GTATTTTATAAGTATACC-----CCCTCTCTGTCCAAAGTACAATAATCTGACTCAAGTCTTCCATATTCATTTGGTTATTTTTTTTATTCATTT--CTTACAAAACATCTATTGTTATATACTAGTAAGTAGACAAAACATTGGAGATTA----------CAAATATGGCAAGAATATTTCATTACAGGATCAGAA-A-AAAATGTATG---TTAGATCTTCATATTCATTNATATCATAAAATGGGCATTTTACTTGTCATTTTAAAATAT----AACATATTGCAATAAGTAATCCTGACATCAAAATATAAAACGTACAGTAG-AAAAAGCACATTNA-CTTTTTTAATACATCAACTGATAATGCAAAAATACCAATATATTA----AACTTATACCGTCGT-AAAAT-TAAAAACA-A-TAGAATATTATA-CCCCTACCCCCTTTTTGACTTTTGCCAATTTTGCCAATTTTCGAATATTAACATGTTACAATACGTTGTCCC-GACATCAAATTATAAAACATACCATAGAAAAAGTATATCATCTTTCTTAATACATCAGCTGACAATGT-NA-AATACTNA------TACATCAAACTT--TCACC----ATCTAAAACNT---------C-------TAGAATATTGTACCCCTACCCCATTTCGGCTTTTTGCCAATTTTG-CAATTTC-AAGGGTTTCATGTTACAATTAGTTA-----GCCTGATATCAAATACTAGGTACGGCAGATCAAGCAAATTATCCTTCT---TAC---TATATCAATTATNTAGACTTTCTTCTGAAAAAAAAAACAACAA---CTAGTTTTGGGTTTACATCCGCCAATGTATGTCTGACGTTTGTCAGTATTTTGTCAATTCACATACAAATAACCACCGAGTCCCTTTTTCATTTCCCCAACACAATTTAAATGTCACTGNAAAGGGACATACAGCAACATTTACACGTAG--TAAGACTGGAATCTGGAAAGTCAACGATTCTCCGACCACACTGAGCT----GTCTAACATGAACGTTCTACATTTTAACCCAGATTAAGGTTATCAAAAACAGGCAATCGTCATTATCCCACA--ATCTTTA-TTC-TTA-AA-AATATGACCACCGACGTAACAGTGATCAATTAATTCACGCGACCGTAAAACATTGTGT-TT-TNAGACGATTTATTCGTGA-AA-TGTCACGA--AAATCACGAAT-GATA---ATATTT----------T---GG---TAACTCGTGT-GTAGAAA-ATT--AAGTCTNNATCGTCTTCGACGCTCGCTTTTT----C-TAAGAAAA----GCC-TA--AGAAAAGCAAGCGTCGCAGAT-GATCAA-G--AC-TAAAA--AAT-AGGGGANT--T--CCCAAGTTACGGACTTATCCGAAGTTACCCGA---TTTT-TTCCGATTTCGTTATGGACGGAATAC
gi|1 : TTCCATCCATAATACTCAATATTTGAAATCTAAAAA---AAC---CTTTTACATTCATTTTACACATTAAATTTTGGATTAAATCCCAAA-T----T-T-T-AGGAACTTTTATCATATATT-TCTT-CAGTTTTGGT------GTATTTTATAAGTATACC-----CCCTCTTTGTCCAAAGTACAATAATCTGACTCAAA-CTTCAATATTCATTTGGTTATTTTTCTTATTTATTT--CTAACAAAAAATCTGTTGTTATATACTAGTAAGTAAACAAAAAATTGGAAATTA----------CAAATATGGCAAGAATATTTCATTACAGGATCAGAA-A-AAAAAAAAAAAAATTAGATCTTCATATTGATTAATATTATAAAATGGGCATTTTACTTGTCCTTTTAAAATATTTATAACAAATTGCAATAAGTAATCCTGACATCAAAATATAAAACATACAGTAG-AAAAAGCACATGGAACTTTTTTAATACATCAATTAATATTGCAAAAATACCAATATATTA----AACTTTTACCGTCAT--AAAT-TAAAAACATA-TAGAATATAATA-ACCCTACCCCCTTTTTAACTTTTGCCAATTTTGCCAATTTTCGAATATTAACATGTTGCAATACGTTGTCCC-GACATCAAATTATAAAATATACCAGAGAAAAAGTATATCATCTTTCTTAATACATCAGCTGACAATGTAAA-AATACTAA------TACTTCAAACTA--TTACC----ATCTAAAACAT---------C-------TAGAACATTGTACCCCAACTTCATTTTGGCTTTTTGCCAATTTTGATAATTTCAAAGGGTTTCATGTTACAATGAGTTACCAATACCTGATATCAAATACAAGGCACACCAGATCAAGCAAATTATCCTTCT---TAC---TATATCAATTATAAAGATTTTCGTCT----ACAAAAACAACAA---CTAATTTTGTGTTTACATCCGCCAATGTGTGTCTGCCATTTGTCAGTATTTTGTCATTTCACATACAAATAACCACCAAGTCGCTTTTTCACTTCCCCAACACAATTTAAATGCCACTGGAAAGGGACATACAGAAACATTTACACGTAG--TAAGACTGGAATCAAGAAAGTCAATGATTCTTCGACCTCACTGAGCTCACAGTCTAAAATGAACATTCTACATTTTAACCCAGATTAAGGTTATCATAAACAGGCAATTGCCACTATCCCACA--ATCTTAA-TCC-TTA-AACAATATGACCACCGACATAACAGTGTTCAATTAATTCATGCATCCGTAAAACGTTGTGT-TT-TAAGACGATTTATTCGTGA-AA-TATCATTA--AAATCAAGAAT-GATA---ATATTC----------T---GG---TAACTTGTGT-GTAGAAA-ATT--AAGTCTAAATCATCTTTGATGCTTGCTTTTT----CATAAGAAAA----GCC-TA--AGAAAACCAAGCATTCCAGGT-GATCAA-G--AT-TAAAA--AATCAGGAGATT--TCCCCCAAGTTACAGCCTTATGCGAAGTTACCTGA---TTTT-TTCCAATTTTGATATGGACGAAATAC
gi|10 : TTCCATGTGTAACGCTCAATGTT-AGAAACTAAAAA---AAAAAATTTTTATTTTCATTTTCCACAATCAATTCTGAATACAAC-----A-T----T-T-T-AGGAACATTTAACGTATATTCTTTT-TAGTTTTGGT------GTATTTTATA------CA-----CCCTCTCGGTCCAAAGTACAAGAAAGTGACAGAAGCTTTTCATACTCAGTTGTTTA-TTTTTTTATTCCTTT--CTTACAAATCATATA---TTATACACtt
gi|11 : aCAAAT-GAAA---ATA------------------A---CAACTAGTGT---AGAAA--------GTC---ATCATC---GACGCATGCCTTTT----CCTAAAAAAAAGAGNNN-NN--NNNNNNNNNNNNNNNNNNNNN-NNNNNN-N--NN-TAGAT--ATT-AGGGGAAT--T--CCTAAGTTACGAACTTATCCGAAGTTACC--A------------GATTTCGTTATATATGGAA
gi|12 : aatattgtacccctagtcTCCATCCATAATACTCAGTGTTTAAAAACTAAAAAGAAAAT---TTTTTACATTCATTTTCCACTTTATATTCTGGATTCAATCCCAAAGT----T-T-T-AGGAATTTTTACTGTATATC-TTTT-CAGTTTTGGT------GTATTTT
gi|13 : aaAGATAA----GTC-TA--AGAAAAGCGAGCGTTCCAGAT-GATCAA-G--TC-TAAAAAAAAT-AGGGGAGT--T--TCCAAGTCACGGACTTATCCGAAGTTGCCCGATTTTTTT-TTCTGATTTCGTTATGGACAGAATAC
gi|14 : agtAGTCTCTATCAT-TTCGACGTTCG-TTTTT----C-T-------------C--------AAAGCAAGCTTCGGAGAT-GATCAA-G--AC-T--------T-AGGGAAAT-----CCCACGATACGGATTTAACCGAAGTTATCCGA---TTTT-T
gi|15 : --AAGTCTTGCTCATCCCCGACGCTTGCTTT--------TAAAAACC----GCT-TATCTTTAATCCAAGCGTCGCAGAT-GA-CAACG--AT-TAatgca
gi|16 : acaaaAGTCTAGATCTTCTGCAGCGCTTGATTTTCAAGAC-TTAGAAAA----AAAATT--AGAAAAACAAGCGTCCCTAAT-GATC
gi|17 : TATTGTTATATACCATTAA-TAGACAAAACATTATAGATTA----------CACATAAGACAAGTATAGTTTATAACAAGATCAGAta
gi|18 : aAA--AAT-AGGGGAAT--T--CCCAAGTTACAGACTTTTCCAAAGTTA-CTGT---TTTT-TTCCGATTTCATTATGGACGGAATA
gi|19 : TATTCTTCTGACTACATGTATATCAATTATCTAGACTTTCTTCTGAAAAAAAA
gi|2 : TTCCATTCATTATACTCAGTGTTGAAAAACTAAAAA---CTC---TTTTTACTGTCTTTTAACACTTTAAATTCTGAATTCAATCCTAAA-T----T-T-TTAGGAACTTTTATCGTATATT-TTTTTCAATTTTGGT------TTATTTTACAAGTATACC-----CCCTCTGTGTGTAAGGTACAATATTCTGACTCAAGTCTTCCATATTCGTTT---T-TTTTTTTTATTAATTT--CTTACAAAACATCTTTTCTTATATACTAGTAAGTAGGCAAAACATTGGAGATTATAACAAAATACAAATACGGCACGAATATTCTATTTTATAATCAGAA-A-AAAATATA--------GATCGTCATATGCATTAATAT---AAAATGGGCATTTTATTTGTCACTTTAAA-TAT----GACATATTGTAATAC----TCCTGACATCAAAATATAAAAGGTACAGTAG-AGAAAGCACATTAA-CTGTTTTAATACATCAACTGATAATGCAAAAATACCAATATATCA----AACTTATACCGTCA--AAAAT-TAAAAACA-AATAGAATATTATA-CCACTACAACCGTTTTGACTTTTGCCAAATTTGCCAATTTTCGAAATTTAACATGTTACAATACGTCGCCCT-GACATCAAACTATAAAATATACCACAGAAAAAGT-CATCATCTTTCCTAATACATCAGCTGAAAATGT-GACAATATTTA------TACATCAAAGTTCATCAC-----AT-TGAAACAA---------T-------TAGAATATTGTACCCCTACCCCATTTTGGCTTTTTGTCAGTTTTG---------AAGGGTTTCATGTTACAATTAGTTA-----GCCTTTTATCAATTACTAGGTATGGCAGA-------------CCTTCA---TAC---TATATCAGTTATATAAACTTTCTTCTGAAAAAAAAAACAACAACATCTAGTGTTTGGTTTACATCCGCCAATGTATAT
gi|2 : AAAACAATTCAAAT-TCACTGGAAAGAGACATACAGTAATATTTACACATAG--TAAGACTGGAATCTAGAAAGTCAAACACTCTCCGACCATACTGACCT----GTCTAACATGATTG------ATTTTAA--------------A-CAAAAACAGGAAATCGTCATTAT---ACA--ATCTGTA-TTC-TTTTAA-AATATGACCACCGACGAAACAGTGATCAATTAATTCATGCAACCGTTAAACATTGTGG-TT-TTAGACGATTTATTCGTGA-AA-TGTCATGA--AAATCACGAAT-GATA---CAATTT----------T---GA---AAACTGGTGT-GAAGAAA-ATTAAAAGTCTTAATCATTTTCAACGCTTGATTTTT----T-TAATAAAA----TAC-TA--AGAAAAGCAAGCGTCCCAGAT-GATCAA-G--GCTTAAAA--CAT-AGGGAATT--T--TCCAAGTTACGAACGTGTCCGAAGTTACCC-----TGTT-TTCCGATTTAATCATAGACGAAaaaaacaattcaaattcactggaaagagacatacagtaatatttacacatagtaagactggaatctagaaagtcaaacactctccgaccatactgacctgtctaacatgattgattttaaacaaaaacaggaaatcgtcattatacaatctgtattcttttaaaatatgaccaccgacgaaacagtgatcaattaattcatgcaaccgttaaacattgtggttttagacgatttattcgtgaaatgtcatgaaaatcacgaatgatacaattttgaaaactggtgtgaagaaaattaaaagtcttaatcattttcaacgcttgatttttttaataaaatactaagaaaagcaagcgtcccagatgatcaaggcttaaaacatagggaattttccaagttacgaacgtgtccgaagttaccctgttttccgatttaatcatagacgaa
gi|3 : ttccattcattatactcagtgttgaaaaactaaaaactctttttactgtcttttaacactttaaattctgaattcaatcctaaatttttaggaacttttatcgtatatttttttcaattttggtttattttacaagtataccccctctgtgtgtaaggtacaatattctgactcaagtcttccatattcgttttttttttttattaatttcttacaaaacatcttttcttatatactagtaagtaggcaaaacattggagattataacaaaatacaaatacggcacgaatattctattttataatcagaaaaaaatatagatcgtcatatgcattaatataaaatgggcattttatttgtcactttaaatatgacatattgtaatactcctgacatcaaaatataaaaggtacagtagagaaagcacattaactgttttaatacatcaactgataatgcaaaaataccaatatatcaaacttataccgtcaaaaattaaaaacaaatagaatattataccactacaaccgttttgacttttgccaaatttgccaattttcgaaatttaacatgttacaatacgtcgccctgacatcaaactataaaatataccacagaaaaagtcatcatctttcctaatacatcagctgaaaatgtgacaatatttatacatcaaagttcatcacattgaaacaattagaatattgtacccctaccccattttggctttttgtcagttttgaagggtttcatgttacaattagttagccttttatcaattactaggtatggcagaccttcatactatatcagttatataaactttcttctgaaaaaaaaaacaacaacatctagtgtttggtttacatccgccaatgtatataAAGTATATC-----CC-TCCCTGTCCAAAGTACAATAATCTGACTCAAGTCTTCCATATTCATTTGGTTACTTTT-TTATTCATTT--CTTACAAAACATATATTGTTATATACTAGTAAGTAGACAAAACATTGGAGATTA----------CAAATATGGCAAGATTATTTCATTACAGGATCAGAA-A-AAAATGTATG---TTATATCTTCATATTCATTCATATCATAAAATGAGCATTTTACTTGTCAATTTAAAATAT----AACATATTGCGATAAGTTATCCTGACGTCAAAATATAAAA
gi|3 : AAAATAT-AACATATTGCGATAAGTTATCCTGACGTCAAAATATAAAAG-------GAAT-CTATAACCCCAACCCCCTTTCTGACTTTTGCCAATTTTG-----------------GCATGTTACAATACATTGTCCCTGGCATCAAATTATAAAACATACCATAGGAAAAGTATATCATCTTTCTTAATACATCAGCTGACAATGT-TA-AATACTTATACATGTACATCAAACTT--TTACCATCGATCTAAAACTTGAAAAAAAAC--------AGAATATTGTACCCGTACCCCATTTCGACTTTTTGCCAATTTTGCCAATTTCTAAGGGTTTCATGTTACAATTAGTTA-----GCCTGATATCAAATACTAGGTACAGCAGGTCAAGTAAATTATCCTTCT---TAC---TATATCAATTATCTAGACTTTCTTCTG--GAAAAAAAC--CAA---CTAGTTTTGGGTTTGCATCCGTCAATGTATGTCTGACGTTTGTCAGTATTTTGTCAATTCATATACAAATTACGACCGAGTCCCTATTTCATTTCCCGAACA------------CACTGTAAAGTGACATACAACAACATTTACATGTAGTATAAGACTGGAATCTGAAAAGTCCACGATTCTCC------------------GTCTTACATCAATGATCTACATTTTAACCCAGATTAATGTTATC-AAAACAGGCAATCGTCATTATCCCACA--ATCTTCA-TTCTTTA-AA-AATATGACCACCGACATAACAGTGATCAATTAATTCATCCAACTGTAAAACATTATAT-TT-TAAGACAATTTATTCATGA-AA-TGTCAAGA--AAATTACTAAT-GATA---ATATTT----------T---GG---TAACTCGTGT-GTAGAAA--------------ATCGTCTTCGGCGCTTGCTTTTTC---C-TAAGAAAA----Gggaatctataaccccaaccccctttctgacttttgccaattttggcatgttacaatacattgtccctggcatcaaattataaaacataccataggaaaagtatatcatctttcttaatacatcagctgacaatgttaaatacttatacatgtacatcaaacttttaccatcgatctaaaacttgaaaaaaaacagaatattgtacccgtaccccatttcgactttttgccaattttgccaatttctaagggtttcatgttacaattagttagcctgatatcaaatactaggtacagcaggtcaagtaaattatccttcttactatatcaattatctagactttcttctggaaaaaaaccaactagttttgggtttgcatccgtcaatgtatgtctgacgtttgtcagtattttgtcaattcatatacaaattacgaccgagtccctatttcatttcccgaacacactgtaaagtgacatacaacaacatttacatgtagtataagactggaatctgaaaagtccacgattctccgtcttacatcaatgatctacattttaacccagattaatgttatcaaaacaggcaatcgtcattatcccacaatcttcattctttaaaaatatgaccaccgacataacagtgatcaattaattcatccaactgtaaaacattatattttaagacaatttattcatgaaatgtcaagaaaattactaatgataatattttggtaactcgtgtgtagaaaatcgtcttcggcgcttgctttttcctaagaaaag
gi|4 : aagtatatccctccctgtccaaagtacaataatctgactcaagtcttccatattcatttggttacttttttattcatttcttacaaaacatatattgttatatactagtaagtagacaaaacattggagattacaaatatggcaagattatttcattacaggatcagaaaaaaatgtatgttatatcttcatattcattcatatcataaaatgagcattttacttgtcaatttATAATACGAAATGTTTAAAACCTAAAAT---T-C---TTTTTACTGTCATTTTCCACATTAAATGTTGGATTCAGTACCAAA-TAAATTAT-T-AAGAACATTTACCGTATATT-TTTC-CAGTTTCGGT------GTAATTTATTAGTTTACCGTGCCCCCTCTCTGTCCAAAGTACAAAAATCTGACCCAAGTCTTCCATATTCATTTGGTTATATTTTTTATTCATTT--CTTACAAAATGTCTATAGTTATATACTAGTAAGTAGACAGTACAATAGAGATTA----------CAAATATTACAAGAATATTTCATTACAGGACCAGAATA-AAAATGTATG---TTAGATCTTCATATTCATTTATATTATATAATGGGTATTTTACTTGTCATTTTGAAATAA----CACTTTTTGCAATAAGTAATCCTGACATCAAAATATAAAATGTACAGTAGAAAAAAGCATATTTA-C-TTTTTAATACATCACCTGATAATGCAAAAATAACAATA
gi|4 : gGAATATTAATATGTTACAATACATTGTCCC-GACAACAAATTATAAAGCAAATCATAGAAAAAGTATATCATCTTTCTTAATACATCAAGTGACAATG--CA-AATACTAA------TACATCAAACTT--ACACG----ATCTAAAACTT---------CAAAAACTTAGAATATTGTACCCCTAacaataacattaacaagaatattaatatgttacaatacattgtcccgacaacaaattataaagcaaatcatagaaaaagtatatcatctttcttaatacatcaagtgacaatgcaaatactaatacatcaaacttacacgatctaaaacttcaaaaacttagaatattgtaccccta
gi|5 : gataatacgaaatgtttaaaacctaaaattctttttactgtcattttccacattaaatgttggattcagtaccaaataaattattaagaacatttaccgtatatttttccagtttcggtgtaatttattagtttaccgtgccccctctctgtccaaagtacaaaaatctgacccaagtcttccatattcatttggttatattttttattcatttcttacaaaatgtctatagttatatactagtaagtagacagtacaatagagattacaaatattacaagaatatttcattacaggaccagaataaaaatgtatgttagatcttcatattcatttatattatataatgggtattttacttgtcattttgaaataacactttttgcaataagtaatcctgacatcaaaatataaaatgtacagtagaaaaaagcatatttactttttaatacatcacctgataatgcaaaaataacaataacaataacattaacaaAAATTATAA---CTAGTTTTAGGTTTACATCCGTCAATGTATGTCTGACATTTGTCAGTAATTAATAAATTGACATACAAATAACCACCGAATCCCTTTTTCATTTCCCCAGCACAATTTAAATGTCACTGTTAAGGGACATACAACCACATTTACACGTAG--TAACACTGGAATCTGTAAAGTTAACGATTCTCCGACTACACTGAGCT----GTCTAGCATAAGCGTTCTACATTTTAA-CGAGATTAAGGTTATCAAAAACAGGTAATCTTCATTATCCCACA--CTCGTTATTTT-TTA-AA-AATATGACAATCGACATAACAGTGATCACATAATATATGCAGCCATAACACATTGTGT-TT-TACGACCATTTAATAGTAA-AA-TTTTACGA--AAATCACGAGT-GATA---ATATTG----------T---GG---TAATTCGTGT----AAAA-ATGAAAAGTCTAAATCATCTTCGACGCTTGCTTTTTCC--C-TAAGAAAA----GTC-TT--AGAAATGCGAGCGTCATAGAT-GATCAA-G--AT-TAAAA--AAT-AGGGGA-T--T--CCAAAGTTACGTTTTTATCCGAAGTTCCCCGA---TTTTATTCCGATTTATTTATGGACGGAATAC
gi|6 : ataacaccaaatcTTCCGTCCACAATACTCAATGTTTAAAAACTGAAAA---AAA---TTCTTACTTTCACTTTCCACATTAAATTC------------CAAA-T----T-TAT-AGGAACTTTTACAGTATATT-TTTA-CAGTTTTCGTATACATGTATTTCATAAGTATGCC-----CTCTCTCTGCCCAAAGTACAATATTCTGACTCA-GTCTCTCATATTCATTT--------TTTTTAT--ATTTAACTCACAGA----CCATTGTTATATACAGGTAAGTAAACTAAAAATTGGAGATTA----------CAAATATGGCAAGAATATTTCATAACATGATCAGAA-ATTTAGTTTATG---TGAGATCTTCATATTCATTTATAACATAAAATTGGCATTTTACATGTC
gi|7 : GTT----GTTTAACATGAACATTCTTTATTTTAACACAGATTTAGGTAAACAAAAACAGACAATCGTCATTATTCCACA--TTTTTTA-TTC-TAT-AA-AGCATGACCGCCGGCATAACAG-GATC----ACTTCACA-----GTAACATATTGTGT-TT-TTAGGCAATTTATTTGGGA-AA-TGTAACGA--AAATCATGAAT-AAGA---ATATTT----------T---GA---TTAT---TGT-GTAAAAA-AATAAAAGTCTAAAGCGTCCTGGATGATC-------------------AA----GCC-TT--A-AAAAATAAG----GGAAAT-TTCCAA-GTTAC---------------GGATTCAT--CCGAAGTTATCGATTT-------------------TTT----CCGATTCCGATATGGACGGAATGC
gi|8 : ACATTTTAACTCGTGTTTTGGTTA-CTAAAACGTGCAGTCGTCA--ACCTCACACTACCCTTC-TTC-TTA-AC---CATGACCACCTACATAACG--------------CACGCGATCTTAAAACGTGGTAT-TTCTAAAACGATTTATTCGAGATAC-TCTCGCGA--AAATCACG--TCGACAGCCATATTT----------T---TGACATAAC----------GGGA-GT----AGTTTTTATCAT-TTCGACGTTCGCTTTTC----T-CGAG----------------------GTAAGCGTCGCAGATAAATCAA-G--AC-T--------T-AGGGGAGT--T--CCCATGTAACAGATTTA----A------TCGA---TTTT-TGCCGATTCCc
gi|9 : ACCGACG--ACATT-ATCAATAAACACACGTGACCTTAAA-CATTGTGTATC-TTAGACGATTTCTTCGTAA-AACTGTCACGAGAAAATCACGAAC-GGCAGCCATACTTGGCTCATCACTAAAGG---TATCTCTTGTCGTAAAAAGAGT--A-GTTTGTGTAGTTTT-GATGTTCGCCTTT---------------------C-TA--A---AAGCAAACGTTTCAGAT-AATCAA-G--AC-TCGGA--A------GGAAT--T--CCAAAGTTACGGATTTATCCGAAGTTATCTGC---TTTT-TGCCGATTTCGTTAaactttgtcagtatgatcaacactaca
Alignments
lowQualScore : 222222222 1111 111111 11111 111111 2222222222 11111 22222 1 1 2222 2222 1 33333 1 1 11111 222222 11 33333 666666666666666666 555555555 33333 111 111 1111 111 11 1111 1 111 2222222222222222222 111 333333 555555555555555555555555555555 22222222 111111
lowQualScore : 3 777777777 6 6 4444 6 6 6 6 6 999999 66666 1 222222 1 1 99 44 9999999999 1 8 8 1 88888 0 1 6 1 3 22222 2 3 3 3 1 3 7 22 8888 8888 3 11111 7 3 6 77 0 0 3 55555 1 888888 33 00000 2 1 999999999999999999 0 888888888 33333 0 7 3 777 777 1 5555 9 777 0 0 2 0 99 1 0 0 33 0 0 2 444 7777 6 77 3 1 3 1 1 99 6 6 6 6 33 222 5555 1 33 5 5 1 5 5 77 5 1 777 5555555555555555555 77 333 777777 77 2 2 0 0 1 111111111111111111111111111111 3 3 4 55 4 00000000 4 4 66666 0 3 000000 4 1
lowQualScore : . ......... . . .... . . . . . ...... ..... . ...... . . .. .. .......... . . . . ..... . . . . . ..... . . . . . . . .. .... .... . ..... . . . .. . . . ..... . ...... .. ..... . . .................. . ......... ..... . . . ... ... . .... . ... . . . . .. . . . .. . . . ... .... . .. . . . . . .. . . . . .. ... .... . .. . . . . . .. . . ... ................... .. ... ...... .. . . . . . .............................. . . . .. . ........ . . ..... . . ...... . .
lowQualScore : 2 222222222 7 7 2222 7 7 7 7 7 222222 77777 7 000000 7 0 22 55 2222222222 0 0 0 4 22222 6 0 4 2 2 00000 5 5 7 3 0 3 3 88 3333 7777 3 33333 3 3 7 00 0 8 2 22222 0 888888 88 00000 5 0 888888888888888888 7 777777777 33333 7 3 7 555 555 0 5555 8 555 2 7 5 8 55 0 2 2 88 2 2 5 000 0000 0 77 7 7 5 7 0 22 7 7 7 7 11 999 9999 9 00 7 7 0 7 7 99 0 0 555 6666666666666666666 88 999 888888 11 5 0 5 2 4 333333333333333333333333333333 8 6 0 55 0 22222222 0 9 99999 9 2 111111 0 7
consensus : TTCCATCCATAATACTCAATGTTTAAAAACTAAAAA---AAC---TTTTTACTTTCATTTTCCACATTAAATTCTGGATTCAATCCCAAA-T----T-T-T-AGGAACTTTTACCGTATATT-TTTT-CAGTTTTGGT------GTATTTTATAAGTATACC-----CCCTCTCTGTCCAAAGTACAATAATCTGACTCAAGTCTTCCATATTCATTTGGTTATTTTTTTTATTCATTT--CTTACAAAACATCTATTGTTATATACTAGTAAGTAGACAAAACATTGGAGATTA----------CAAATATGGCAAGAATATTTCATTACAGGATCAGAA-A-AAAATGTATG---TTAGATCTTCATATTCATTNATATCATAAAATGGGCATTTTACTTGTCATTTTAAAATAT----AACATATTGCAATAAGTAATCCTGACATCAAAATATAAAACGTACAGTAG-AAAAAGCACATTNA-CTTTTTTAATACATCAACTGATAATGCAAAAATACCAATATATTA----AACTTATACCGTCGT-AAAAT-TAAAAACA-A-TAGAATATTATA-CCCCTACCCCCTTTTTGACTTTTGCCAATTTTGCCAATTTTCGAATATTAACATGTTACAATACGTTGTCCC-GACATCAAATTATAAAACATACCATAGAAAAAGTATATCATCTTTCTTAATACATCAGCTGACAATGT-NA-AATACTNA------TACATCAAACTT--TCACC----ATCTAAAACNT---------C-------TAGAATATTGTACCCCTACCCCATTTCGGCTTTTTGCCAATTTTG-CAATTTC-AAGGGTTTCATGTTACAATTAGTTA-----GCCTGATATCAAATACTAGGTACGGCAGATCAAGCAAATTATCCTTCT---TAC---TATATCAATTATNTAGACTTTCTTCTGAAAAAAAAAACAACAA---CTAGTTTTGGGTTTACATCCGCCAATGTATGTCTGACGTTTGTCAGTATTTTGTCAATTCACATACAAATAACCACCGAGTCCCTTTTTCATTTCCCCAACACAATTTAAATGTCACTGNAAAGGGACATACAGCAACATTTACACGTAG--TAAGACTGGAATCTGGAAAGTCAACGATTCTCCGACCACACTGAGCT----GTCTAACATGAACGTTCTACATTTTAACCCAGATTAAGGTTATCAAAAACAGGCAATCGTCATTATCCCACA--ATCTTTA-TTC-TTA-AA-AATATGACCACCGACGTAACAGTGATCAATTAATTCACGCGACCGTAAAACATTGTGT-TT-TNAGACGATTTATTCGTGA-AA-TGTCACGA--AAATCACGAAT-GATA---ATATTT----------T---GG---TAACTCGTGT-GTAGAAA-ATT--AAGTCTNNATCGTCTTCGACGCTCGCTTTTT----C-TAAGAAAA----GCC-TA--AGAAAAGCAAGCGTCGCAGAT-GATCAA-G--AC-TAAAA--AAT-AGGGGANT--T--CCCAAGTTACGGACTTATCCGAAGTTACCCGA---TTTT-TTCCGATTTCGTTATGGACGGAATAC
Reference ( family-266 ) : TTCCATCCATAATACTCAATGTTTAAAAACTAAAAA---AAC---TTTTTACTTTCATTTTCCACATTAAATTCTGGATTCAATCCCAAA-T----T-T-T-AGGAACTTTTACCGTATATT-TTTT-CAGTTTTGGT------GTATTTTATAAGTATACC-----CCCTCTCTGTCCAAAGTACAATAATCTGACTCAAGTCTTCCATATTCATTTGGTTATTTTTTTTATTCATTT--CTTACAAAACATCTATTGTTATATACTAGTAAGTAGACAAAACATTGGAGATTA----------CAAATATGGCAAGAATATTTCATTACAGGATCAGAA-A-AAAATGTATG---TTAGATCTTCATATTCATTNATATCATAAAATGGGCATTTTACTTGTCATTTTAAAATAT----AACATATTGCAATAAGTAATCCTGACATCAAAATATAAAACGTACAGTAG-AAAAAGCACATTNA-CTTTTTTAATACATCAACTGATAATGCAAAAATACCAATATATTA----AACTTATACCGTCGT-AAAAT-TAAAAACA-A-TAGAATATTATA-CCCCTACCCCCTTTTTGACTTTTGCCAATTTTGCCAATTTTCGAATATTAACATGTTACAATACGTTGTCCC-GACATCAAATTATAAAACATACCATAGAAAAAGTATATCATCTTTCTTAATACATCAGCTGACAATGT-NA-AATACTNA------TACATCAAACTT--TCACC----ATCTAAAACNT---------C-------TAGAATATTGTACCCCTACCCCATTTCGGCTTTTTGCCAATTTTG-CAATTTC-AAGGGTTTCATGTTACAATTAGTTA-----GCCTGATATCAAATACTAGGTACGGCAGATCAAGCAAATTATCCTTCT---TAC---TATATCAATTATNTAGACTTTCTTCTGAAAAAAAAAACAACAA---CTAGTTTTGGGTTTACATCCGCCAATGTATGTCTGACGTTTGTCAGTATTTTGTCAATTCACATACAAATAACCACCGAGTCCCTTTTTCATTTCCCCAACACAATTTAAATGTCACTGNAAAGGGACATACAGCAACATTTACACGTAG--TAAGACTGGAATCTGGAAAGTCAACGATTCTCCGACCACACTGAGCT----GTCTAACATGAACGTTCTACATTTTAACCCAGATTAAGGTTATCAAAAACAGGCAATCGTCATTATCCCACA--ATCTTTA-TTC-TTA-AA-AATATGACCACCGACGTAACAGTGATCAATTAATTCACGCGACCGTAAAACATTGTGT-TT-TNAGACGATTTATTCGTGA-AA-TGTCACGA--AAATCACGAAT-GATA---ATATTT----------T---GG---TAACTCGTGT-GTAGAAA-ATT--AAGTCTNNATCGTCTTCGACGCTCGCTTTTT----C-TAAGAAAA----GCC-TA--AGAAAAGCAAGCGTCGCAGAT-GATCAA-G--AC-TAAAA--AAT-AGGGGANT--T--CCCAAGTTACGGACTTATCCGAAGTTACCCGA---TTTT-TTCCGATTTCGTTATGGACGGAATAC
gi|1 : TTCCATCCATAATACTCAATATTTGAAATCTAAAAA---AAC---CTTTTACATTCATTTTACACATTAAATTTTGGATTAAATCCCAAA-T----T-T-T-AGGAACTTTTATCATATATT-TCTT-CAGTTTTGGT------GTATTTTATAAGTATACC-----CCCTCTTTGTCCAAAGTACAATAATCTGACTCAAA-CTTCAATATTCATTTGGTTATTTTTCTTATTTATTT--CTAACAAAAAATCTGTTGTTATATACTAGTAAGTAAACAAAAAATTGGAAATTA----------CAAATATGGCAAGAATATTTCATTACAGGATCAGAA-A-AAAAAAAAAAAAATTAGATCTTCATATTGATTAATATTATAAAATGGGCATTTTACTTGTCCTTTTAAAATATTTATAACAAATTGCAATAAGTAATCCTGACATCAAAATATAAAACATACAGTAG-AAAAAGCACATGGAACTTTTTTAATACATCAATTAATATTGCAAAAATACCAATATATTA----AACTTTTACCGTCAT--AAAT-TAAAAACATA-TAGAATATAATA-ACCCTACCCCCTTTTTAACTTTTGCCAATTTTGCCAATTTTCGAATATTAACATGTTGCAATACGTTGTCCC-GACATCAAATTATAAAATATACCAGAGAAAAAGTATATCATCTTTCTTAATACATCAGCTGACAATGTAAA-AATACTAA------TACTTCAAACTA--TTACC----ATCTAAAACAT---------C-------TAGAACATTGTACCCCAACTTCATTTTGGCTTTTTGCCAATTTTGATAATTTCAAAGGGTTTCATGTTACAATGAGTTACCAATACCTGATATCAAATACAAGGCACACCAGATCAAGCAAATTATCCTTCT---TAC---TATATCAATTATAAAGATTTTCGTCT----ACAAAAACAACAA---CTAATTTTGTGTTTACATCCGCCAATGTGTGTCTGCCATTTGTCAGTATTTTGTCATTTCACATACAAATAACCACCAAGTCGCTTTTTCACTTCCCCAACACAATTTAAATGCCACTGGAAAGGGACATACAGAAACATTTACACGTAG--TAAGACTGGAATCAAGAAAGTCAATGATTCTTCGACCTCACTGAGCTCACAGTCTAAAATGAACATTCTACATTTTAACCCAGATTAAGGTTATCATAAACAGGCAATTGCCACTATCCCACA--ATCTTAA-TCC-TTA-AACAATATGACCACCGACATAACAGTGTTCAATTAATTCATGCATCCGTAAAACGTTGTGT-TT-TAAGACGATTTATTCGTGA-AA-TATCATTA--AAATCAAGAAT-GATA---ATATTC----------T---GG---TAACTTGTGT-GTAGAAA-ATT--AAGTCTAAATCATCTTTGATGCTTGCTTTTT----CATAAGAAAA----GCC-TA--AGAAAACCAAGCATTCCAGGT-GATCAA-G--AT-TAAAA--AATCAGGAGATT--TCCCCCAAGTTACAGCCTTATGCGAAGTTACCTGA---TTTT-TTCCAATTTTGATATGGACGAAATAC
gi|10 : TTCCATGTGTAACGCTCAATGTT-AGAAACTAAAAA---AAAAAATTTTTATTTTCATTTTCCACAATCAATTCTGAATACAAC-----A-T----T-T-T-AGGAACATTTAACGTATATTCTTTT-TAGTTTTGGT------GTATTTTATA------CA-----CCCTCTCGGTCCAAAGTACAAGAAAGTGACAGAAGCTTTTCATACTCAGTTGTTTA-TTTTTTTATTCCTTT--CTTACAAATCATATA---TTATACACtt
gi|11 : aCAAAT-GAAA---ATA------------------A---CAACTAGTGT---AGAAA--------GTC---ATCATC---GACGCATGCCTTTT----CCTAAAAAAAAGAGNNN-NN--NNNNNNNNNNNNNNNNNNNNN-NNNNNN-N--NN-TAGAT--ATT-AGGGGAAT--T--CCTAAGTTACGAACTTATCCGAAGTTACC--A------------GATTTCGTTATATATGGAA
gi|12 : aatattgtacccctagtcTCCATCCATAATACTCAGTGTTTAAAAACTAAAAAGAAAAT---TTTTTACATTCATTTTCCACTTTATATTCTGGATTCAATCCCAAAGT----T-T-T-AGGAATTTTTACTGTATATC-TTTT-CAGTTTTGGT------GTATTTT
gi|13 : aaAGATAA----GTC-TA--AGAAAAGCGAGCGTTCCAGAT-GATCAA-G--TC-TAAAAAAAAT-AGGGGAGT--T--TCCAAGTCACGGACTTATCCGAAGTTGCCCGATTTTTTT-TTCTGATTTCGTTATGGACAGAATAC
gi|14 : agtAGTCTCTATCAT-TTCGACGTTCG-TTTTT----C-T-------------C--------AAAGCAAGCTTCGGAGAT-GATCAA-G--AC-T--------T-AGGGAAAT-----CCCACGATACGGATTTAACCGAAGTTATCCGA---TTTT-T
gi|15 : --AAGTCTTGCTCATCCCCGACGCTTGCTTT--------TAAAAACC----GCT-TATCTTTAATCCAAGCGTCGCAGAT-GA-CAACG--AT-TAatgca
gi|16 : acaaaAGTCTAGATCTTCTGCAGCGCTTGATTTTCAAGAC-TTAGAAAA----AAAATT--AGAAAAACAAGCGTCCCTAAT-GATC
gi|17 : TATTGTTATATACCATTAA-TAGACAAAACATTATAGATTA----------CACATAAGACAAGTATAGTTTATAACAAGATCAGAta
gi|18 : aAA--AAT-AGGGGAAT--T--CCCAAGTTACAGACTTTTCCAAAGTTA-CTGT---TTTT-TTCCGATTTCATTATGGACGGAATA
gi|19 : TATTCTTCTGACTACATGTATATCAATTATCTAGACTTTCTTCTGAAAAAAAA
gi|2 : TTCCATTCATTATACTCAGTGTTGAAAAACTAAAAA---CTC---TTTTTACTGTCTTTTAACACTTTAAATTCTGAATTCAATCCTAAA-T----T-T-TTAGGAACTTTTATCGTATATT-TTTTTCAATTTTGGT------TTATTTTACAAGTATACC-----CCCTCTGTGTGTAAGGTACAATATTCTGACTCAAGTCTTCCATATTCGTTT---T-TTTTTTTTATTAATTT--CTTACAAAACATCTTTTCTTATATACTAGTAAGTAGGCAAAACATTGGAGATTATAACAAAATACAAATACGGCACGAATATTCTATTTTATAATCAGAA-A-AAAATATA--------GATCGTCATATGCATTAATAT---AAAATGGGCATTTTATTTGTCACTTTAAA-TAT----GACATATTGTAATAC----TCCTGACATCAAAATATAAAAGGTACAGTAG-AGAAAGCACATTAA-CTGTTTTAATACATCAACTGATAATGCAAAAATACCAATATATCA----AACTTATACCGTCA--AAAAT-TAAAAACA-AATAGAATATTATA-CCACTACAACCGTTTTGACTTTTGCCAAATTTGCCAATTTTCGAAATTTAACATGTTACAATACGTCGCCCT-GACATCAAACTATAAAATATACCACAGAAAAAGT-CATCATCTTTCCTAATACATCAGCTGAAAATGT-GACAATATTTA------TACATCAAAGTTCATCAC-----AT-TGAAACAA---------T-------TAGAATATTGTACCCCTACCCCATTTTGGCTTTTTGTCAGTTTTG---------AAGGGTTTCATGTTACAATTAGTTA-----GCCTTTTATCAATTACTAGGTATGGCAGA-------------CCTTCA---TAC---TATATCAGTTATATAAACTTTCTTCTGAAAAAAAAAACAACAACATCTAGTGTTTGGTTTACATCCGCCAATGTATAT
gi|2 : AAAACAATTCAAAT-TCACTGGAAAGAGACATACAGTAATATTTACACATAG--TAAGACTGGAATCTAGAAAGTCAAACACTCTCCGACCATACTGACCT----GTCTAACATGATTG------ATTTTAA--------------A-CAAAAACAGGAAATCGTCATTAT---ACA--ATCTGTA-TTC-TTTTAA-AATATGACCACCGACGAAACAGTGATCAATTAATTCATGCAACCGTTAAACATTGTGG-TT-TTAGACGATTTATTCGTGA-AA-TGTCATGA--AAATCACGAAT-GATA---CAATTT----------T---GA---AAACTGGTGT-GAAGAAA-ATTAAAAGTCTTAATCATTTTCAACGCTTGATTTTT----T-TAATAAAA----TAC-TA--AGAAAAGCAAGCGTCCCAGAT-GATCAA-G--GCTTAAAA--CAT-AGGGAATT--T--TCCAAGTTACGAACGTGTCCGAAGTTACCC-----TGTT-TTCCGATTTAATCATAGACGAAaaaaacaattcaaattcactggaaagagacatacagtaatatttacacatagtaagactggaatctagaaagtcaaacactctccgaccatactgacctgtctaacatgattgattttaaacaaaaacaggaaatcgtcattatacaatctgtattcttttaaaatatgaccaccgacgaaacagtgatcaattaattcatgcaaccgttaaacattgtggttttagacgatttattcgtgaaatgtcatgaaaatcacgaatgatacaattttgaaaactggtgtgaagaaaattaaaagtcttaatcattttcaacgcttgatttttttaataaaatactaagaaaagcaagcgtcccagatgatcaaggcttaaaacatagggaattttccaagttacgaacgtgtccgaagttaccctgttttccgatttaatcatagacgaa
gi|3 : ttccattcattatactcagtgttgaaaaactaaaaactctttttactgtcttttaacactttaaattctgaattcaatcctaaatttttaggaacttttatcgtatatttttttcaattttggtttattttacaagtataccccctctgtgtgtaaggtacaatattctgactcaagtcttccatattcgttttttttttttattaatttcttacaaaacatcttttcttatatactagtaagtaggcaaaacattggagattataacaaaatacaaatacggcacgaatattctattttataatcagaaaaaaatatagatcgtcatatgcattaatataaaatgggcattttatttgtcactttaaatatgacatattgtaatactcctgacatcaaaatataaaaggtacagtagagaaagcacattaactgttttaatacatcaactgataatgcaaaaataccaatatatcaaacttataccgtcaaaaattaaaaacaaatagaatattataccactacaaccgttttgacttttgccaaatttgccaattttcgaaatttaacatgttacaatacgtcgccctgacatcaaactataaaatataccacagaaaaagtcatcatctttcctaatacatcagctgaaaatgtgacaatatttatacatcaaagttcatcacattgaaacaattagaatattgtacccctaccccattttggctttttgtcagttttgaagggtttcatgttacaattagttagccttttatcaattactaggtatggcagaccttcatactatatcagttatataaactttcttctgaaaaaaaaaacaacaacatctagtgtttggtttacatccgccaatgtatataAAGTATATC-----CC-TCCCTGTCCAAAGTACAATAATCTGACTCAAGTCTTCCATATTCATTTGGTTACTTTT-TTATTCATTT--CTTACAAAACATATATTGTTATATACTAGTAAGTAGACAAAACATTGGAGATTA----------CAAATATGGCAAGATTATTTCATTACAGGATCAGAA-A-AAAATGTATG---TTATATCTTCATATTCATTCATATCATAAAATGAGCATTTTACTTGTCAATTTAAAATAT----AACATATTGCGATAAGTTATCCTGACGTCAAAATATAAAA
gi|3 : AAAATAT-AACATATTGCGATAAGTTATCCTGACGTCAAAATATAAAAG-------GAAT-CTATAACCCCAACCCCCTTTCTGACTTTTGCCAATTTTG-----------------GCATGTTACAATACATTGTCCCTGGCATCAAATTATAAAACATACCATAGGAAAAGTATATCATCTTTCTTAATACATCAGCTGACAATGT-TA-AATACTTATACATGTACATCAAACTT--TTACCATCGATCTAAAACTTGAAAAAAAAC--------AGAATATTGTACCCGTACCCCATTTCGACTTTTTGCCAATTTTGCCAATTTCTAAGGGTTTCATGTTACAATTAGTTA-----GCCTGATATCAAATACTAGGTACAGCAGGTCAAGTAAATTATCCTTCT---TAC---TATATCAATTATCTAGACTTTCTTCTG--GAAAAAAAC--CAA---CTAGTTTTGGGTTTGCATCCGTCAATGTATGTCTGACGTTTGTCAGTATTTTGTCAATTCATATACAAATTACGACCGAGTCCCTATTTCATTTCCCGAACA------------CACTGTAAAGTGACATACAACAACATTTACATGTAGTATAAGACTGGAATCTGAAAAGTCCACGATTCTCC------------------GTCTTACATCAATGATCTACATTTTAACCCAGATTAATGTTATC-AAAACAGGCAATCGTCATTATCCCACA--ATCTTCA-TTCTTTA-AA-AATATGACCACCGACATAACAGTGATCAATTAATTCATCCAACTGTAAAACATTATAT-TT-TAAGACAATTTATTCATGA-AA-TGTCAAGA--AAATTACTAAT-GATA---ATATTT----------T---GG---TAACTCGTGT-GTAGAAA--------------ATCGTCTTCGGCGCTTGCTTTTTC---C-TAAGAAAA----Gggaatctataaccccaaccccctttctgacttttgccaattttggcatgttacaatacattgtccctggcatcaaattataaaacataccataggaaaagtatatcatctttcttaatacatcagctgacaatgttaaatacttatacatgtacatcaaacttttaccatcgatctaaaacttgaaaaaaaacagaatattgtacccgtaccccatttcgactttttgccaattttgccaatttctaagggtttcatgttacaattagttagcctgatatcaaatactaggtacagcaggtcaagtaaattatccttcttactatatcaattatctagactttcttctggaaaaaaaccaactagttttgggtttgcatccgtcaatgtatgtctgacgtttgtcagtattttgtcaattcatatacaaattacgaccgagtccctatttcatttcccgaacacactgtaaagtgacatacaacaacatttacatgtagtataagactggaatctgaaaagtccacgattctccgtcttacatcaatgatctacattttaacccagattaatgttatcaaaacaggcaatcgtcattatcccacaatcttcattctttaaaaatatgaccaccgacataacagtgatcaattaattcatccaactgtaaaacattatattttaagacaatttattcatgaaatgtcaagaaaattactaatgataatattttggtaactcgtgtgtagaaaatcgtcttcggcgcttgctttttcctaagaaaag
gi|4 : aagtatatccctccctgtccaaagtacaataatctgactcaagtcttccatattcatttggttacttttttattcatttcttacaaaacatatattgttatatactagtaagtagacaaaacattggagattacaaatatggcaagattatttcattacaggatcagaaaaaaatgtatgttatatcttcatattcattcatatcataaaatgagcattttacttgtcaatttATAATACGAAATGTTTAAAACCTAAAAT---T-C---TTTTTACTGTCATTTTCCACATTAAATGTTGGATTCAGTACCAAA-TAAATTAT-T-AAGAACATTTACCGTATATT-TTTC-CAGTTTCGGT------GTAATTTATTAGTTTACCGTGCCCCCTCTCTGTCCAAAGTACAAAAATCTGACCCAAGTCTTCCATATTCATTTGGTTATATTTTTTATTCATTT--CTTACAAAATGTCTATAGTTATATACTAGTAAGTAGACAGTACAATAGAGATTA----------CAAATATTACAAGAATATTTCATTACAGGACCAGAATA-AAAATGTATG---TTAGATCTTCATATTCATTTATATTATATAATGGGTATTTTACTTGTCATTTTGAAATAA----CACTTTTTGCAATAAGTAATCCTGACATCAAAATATAAAATGTACAGTAGAAAAAAGCATATTTA-C-TTTTTAATACATCACCTGATAATGCAAAAATAACAATA
gi|4 : gGAATATTAATATGTTACAATACATTGTCCC-GACAACAAATTATAAAGCAAATCATAGAAAAAGTATATCATCTTTCTTAATACATCAAGTGACAATG--CA-AATACTAA------TACATCAAACTT--ACACG----ATCTAAAACTT---------CAAAAACTTAGAATATTGTACCCCTAacaataacattaacaagaatattaatatgttacaatacattgtcccgacaacaaattataaagcaaatcatagaaaaagtatatcatctttcttaatacatcaagtgacaatgcaaatactaatacatcaaacttacacgatctaaaacttcaaaaacttagaatattgtaccccta
gi|5 : gataatacgaaatgtttaaaacctaaaattctttttactgtcattttccacattaaatgttggattcagtaccaaataaattattaagaacatttaccgtatatttttccagtttcggtgtaatttattagtttaccgtgccccctctctgtccaaagtacaaaaatctgacccaagtcttccatattcatttggttatattttttattcatttcttacaaaatgtctatagttatatactagtaagtagacagtacaatagagattacaaatattacaagaatatttcattacaggaccagaataaaaatgtatgttagatcttcatattcatttatattatataatgggtattttacttgtcattttgaaataacactttttgcaataagtaatcctgacatcaaaatataaaatgtacagtagaaaaaagcatatttactttttaatacatcacctgataatgcaaaaataacaataacaataacattaacaaAAATTATAA---CTAGTTTTAGGTTTACATCCGTCAATGTATGTCTGACATTTGTCAGTAATTAATAAATTGACATACAAATAACCACCGAATCCCTTTTTCATTTCCCCAGCACAATTTAAATGTCACTGTTAAGGGACATACAACCACATTTACACGTAG--TAACACTGGAATCTGTAAAGTTAACGATTCTCCGACTACACTGAGCT----GTCTAGCATAAGCGTTCTACATTTTAA-CGAGATTAAGGTTATCAAAAACAGGTAATCTTCATTATCCCACA--CTCGTTATTTT-TTA-AA-AATATGACAATCGACATAACAGTGATCACATAATATATGCAGCCATAACACATTGTGT-TT-TACGACCATTTAATAGTAA-AA-TTTTACGA--AAATCACGAGT-GATA---ATATTG----------T---GG---TAATTCGTGT----AAAA-ATGAAAAGTCTAAATCATCTTCGACGCTTGCTTTTTCC--C-TAAGAAAA----GTC-TT--AGAAATGCGAGCGTCATAGAT-GATCAA-G--AT-TAAAA--AAT-AGGGGA-T--T--CCAAAGTTACGTTTTTATCCGAAGTTCCCCGA---TTTTATTCCGATTTATTTATGGACGGAATAC
gi|6 : ataacaccaaatcTTCCGTCCACAATACTCAATGTTTAAAAACTGAAAA---AAA---TTCTTACTTTCACTTTCCACATTAAATTC------------CAAA-T----T-TAT-AGGAACTTTTACAGTATATT-TTTA-CAGTTTTCGTATACATGTATTTCATAAGTATGCC-----CTCTCTCTGCCCAAAGTACAATATTCTGACTCA-GTCTCTCATATTCATTT--------TTTTTAT--ATTTAACTCACAGA----CCATTGTTATATACAGGTAAGTAAACTAAAAATTGGAGATTA----------CAAATATGGCAAGAATATTTCATAACATGATCAGAA-ATTTAGTTTATG---TGAGATCTTCATATTCATTTATAACATAAAATTGGCATTTTACATGTC
gi|7 : GTT----GTTTAACATGAACATTCTTTATTTTAACACAGATTTAGGTAAACAAAAACAGACAATCGTCATTATTCCACA--TTTTTTA-TTC-TAT-AA-AGCATGACCGCCGGCATAACAG-GATC----ACTTCACA-----GTAACATATTGTGT-TT-TTAGGCAATTTATTTGGGA-AA-TGTAACGA--AAATCATGAAT-AAGA---ATATTT----------T---GA---TTAT---TGT-GTAAAAA-AATAAAAGTCTAAAGCGTCCTGGATGATC-------------------AA----GCC-TT--A-AAAAATAAG----GGAAAT-TTCCAA-GTTAC---------------GGATTCAT--CCGAAGTTATCGATTT-------------------TTT----CCGATTCCGATATGGACGGAATGC
gi|8 : ACATTTTAACTCGTGTTTTGGTTA-CTAAAACGTGCAGTCGTCA--ACCTCACACTACCCTTC-TTC-TTA-AC---CATGACCACCTACATAACG--------------CACGCGATCTTAAAACGTGGTAT-TTCTAAAACGATTTATTCGAGATAC-TCTCGCGA--AAATCACG--TCGACAGCCATATTT----------T---TGACATAAC----------GGGA-GT----AGTTTTTATCAT-TTCGACGTTCGCTTTTC----T-CGAG----------------------GTAAGCGTCGCAGATAAATCAA-G--AC-T--------T-AGGGGAGT--T--CCCATGTAACAGATTTA----A------TCGA---TTTT-TGCCGATTCCc
gi|9 : ACCGACG--ACATT-ATCAATAAACACACGTGACCTTAAA-CATTGTGTATC-TTAGACGATTTCTTCGTAA-AACTGTCACGAGAAAATCACGAAC-GGCAGCCATACTTGGCTCATCACTAAAGG---TATCTCTTGTCGTAAAAAGAGT--A-GTTTGTGTAGTTTT-GATGTTCGCCTTT---------------------C-TA--A---AAGCAAACGTTTCAGAT-AATCAA-G--AC-TCGGA--A------GGAAT--T--CCAAAGTTACGGATTTATCCGAAGTTATCTGC---TTTT-TGCCGATTTCGTTAaactttgtcagtatgatcaacactaca
blockSeqs : T AAAAAA C G AAAT A A T C T ATACAT GTGCC C GGTTAC T C AA TC TAACAAAATA A T T A TG A C C A G G T G A A . T CC CGAT GTCA A CAAA A A C AT T A TGAC T TACATG CA CATCG C A GAAAAAAAAC CCAATTTCT . T T GAC ATG C GAAA A CAT C GT G TA G CAT . A CC A T A T C CT T T T . GA GTG AATT T AA A C T T C GA C A GCC GGCTCATCACTAAAGG TA CGT ATTAA CT A C C TCCTAAAAAAAAGAGNNNNNNNN N A C TT T AAAAAAAA . A CAT C CGATTT A T
blockSeqs : G GAAAAT C . . . . . . . . . T GGTTAT T A . AC . T . . G TG C T A A A G A T . T . . AC . AA . . . . . TA . A TTA T . . G C T CAAAAACTT . . . . . . A GAAA T . C T T . G TAC . T CA A T A T C . . . . . AT GTG AATT T AA . . A . . . . T GCC TTGACA TG GA ATGAA TG A C C CAAGACTTAGAAAAAAAATTAGA C . . . . AGATAT . G T C CGA . T
blockSeqs : T CTC A . . . . . . . . . T GTTTA T C . AC . G . . G TG T C T . C . . T . . . CA A . . . . T TT . . C GG . . . . T . . . . T CT T A A T T . . . . . AT GTG ACAT A AG . . A . . . . T . TGA TC GT AATAA AG A C A TCCCTAAGAAAAGTCTTAGA G . . . . AAAACA . A T T TGT . T
blockSeqs : T AAA . . . . . . . . . . T TT T C . AT . G . . T . T . . . C T . T T C . . . . . AT GG AATA T GA . . T . . . . T . TGG TC GT GAGT TA T T A TAAAAACCGCTTATCTTT G . . . . AAAAAA . A T C CGA . T
blockSeqs : . TC . . . . . . . . . . T . . . . . . T . . . . . . . . . . . AT TT . A GA . . A . . . . G . TGG TC . GT AA A C C TTTAATAAAATACTAAGA C . . . . CGGAA . T T C CGA . G
blockSeqs : G . . . . . . T . . . . C . TGA . . . AA G C C AAGCCTTAA C . . . . . . T T T TGC . G
blockSeqs : . C . A . . . TT A C C CTCGAG A . . . . . . G T . A . .
blockSeqs : GT G T C TCTC G . . . . . . A T . C . .
blockSeqs : . A . . CTAA G . . . . . . . . . .
blockSeqs : . G . . T .
blockSeqCons : NAN****** TG*** **** G** A***** TCAAAAAAGCTTAGA*************** T****
originalCons : TTCCATCCATAATACTCAATGTTTAAAAACTAAAAA---AAC---TTTTTACTTTCATTTTCCACATTAAATTCTGGATTCAATCCCAAA-T----T-T-T-AGGAACTTTTACCGTATATT-TTTT-CAGTTTTGGT------GTATTTTATAAGTATACC-----CCCTCTCTGTCCAAAGTACAATAATCTGACTCAAGTCTTCCATATTCATTTGGTTATTTTTTTTATTCATTT--CTTACAAAACATCTATTGTTATATACTAGTAAGTAGACAAAACATTGGAGATTA----------CAAATATGGCAAGAATATTTCATTACAGGATCAGAA-A-AAAATGTATG---TTAGATCTTCATATTCATTNATATCATAAAATGGGCATTTTACTTGTCATTTTAAAATAT----AACATATTGCAATAAGTAATCCTGACATCAAAATATAAAACGTACAGTAG-AAAAAGCACATTNA-CTTTTTTAATACATCAACTGATAATGCAAAAATACCAATATATTA----AACTTATACCGTCGT-AAAAT-TAAAAACA-A-TAGAATATTATA-CCCCTACCCCCTTTTTGACTTTTGCCAATTTTGCCAATTTTCGAATATTAACATGTTACAATACGTTGTCCC-GACATCAAATTATAAAACATACCATAGAAAAAGTATATCATCTTTCTTAATACATCAGCTGACAATGT-NA-AATACTNA------TACATCAAACTT--TCACC----ATCTAAAACNT---------C-------TAGAATATTGTACCCCTACCCCATTTCGGCTTTTTGCCAATTTTG-CAATTTC-AAGGGTTTCATGTTACAATTAGTTA-----GCCTGATATCAAATACTAGGTACGGCAGATCAAGCAAATTATCCTTCT---TAC---TATATCAATTATNTAGACTTTCTTCTGAAAAAAAAAACAACAA---CTAGTTTTGGGTTTACATCCGCCAATGTATGTCTGACGTTTGTCAGTATTTTGTCAATTCACATACAAATAACCACCGAGTCCCTTTTTCATTTCCCCAACACAATTTAAATGTCACTGNAAAGGGACATACAGCAACATTTACACGTAG--TAAGACTGGAATCTGGAAAGTCAACGATTCTCCGACCACACTGAGCT----GTCTAACATGAACGTTCTACATTTTAACCCAGATTAAGGTTATCAAAAACAGGCAATCGTCATTATCCCACA--ATCTTTA-TTC-TTA-AA-AATATGACCACCGACGTAACAGTGATCAATTAATTCACGCGACCGTAAAACATTGTGT-TT-TNAGACGATTTATTCGTGA-AA-TGTCACGA--AAATCACGAAT-GATA---ATATTT----------T---GG---TAACTCGTGT-GTAGAAA-ATT--AAGTCTNNATCGTCTTCGACGCTCGCTTTTT----C-TAAGAAAA----GCC-TA--AGAAAAGCAAGCGTCGCAGAT-GATCAA-G--AC-TAAAA--AAT-AGGGGANT--T--CCCAAGTTACGGACTTATCCGAAGTTACCCGA---TTTT-TTCCGATTTCGTTATGGACGGAATAC
finalCons : TTCCATCCATAATACTCAATGTTTAAAAACTAAAAANAN------TTTTTACTTTCATTTTCCACATTAAATTCTGGATTCAATCCCAAA-T----T-T-T-AGGAACTTTTACCGTATATT-TTTT-CAGTTTTGGT------GTATTTTATAAGTATACC-----CCCTCTCTGTCCAAAGTACAATAATCTGACTCAAGTCTTCCATATTCATTTGGTTATTTTTTTTATTCATTT--CTTACAAAACATCTATTGTTATATACTAGTAAGTAGACAAAACATTGGAGATTA----------CAAATATGGCAAGAATATTTCATTACAGGATCAGAA-A-AAAATGTATG---TTAGATCTTCATATTCATTNATATCATAAAATGGGCATTTTACTTGTCATTTTAAAATAT----AACATATTGCAATAAGTAATCCTGACATCAAAATATAAAACGTACAGTAG-AAAAAGCACATTNA-CTTTTTTAATACATCAACTGATAATGCAAAAATACCAATATATTA----AACTTATACCGTCGT-AAAAT-TAAAAACA-A-TAGAATATTATA-CCCCTACCCCCTTTTTGACTTTTGCCAATTTTGCCAATTTTCGAATATTAACATGTTACAATACGTTGTCCC-GACATCAAATTATAAAACATACCATAGAAAAAGTATATCATCTTTCTTAATACATCAGCTGACAATGT-NA-AATACTNA------TACATCAAACTT--TCACC----ATCTAAAACNT---------C-------TAGAATATTGTACCCCTACCCCATTTCGGCTTTTTGCCAATTTTG-CAATTTC-AAGGGTTTCATGTTACAATTAGTTA-----GCCTGATATCAAATACTAGGTACGGCAGATCAAGCAAATTATCCTTCT---TAC---TATATCAATTATNTAGACTTTCTTCTGAAAAAAAAAACAACAA---CTAGTTTTGGGTTTACATCCGCCAATGTATGTCTGACGTTTGTCAGTATTTTGTCAATTCACATACAAATAACCACCGAGTCCCTTTTTCATTTCCCCAACACAATTTAAATGTCACTGNAAAGGGACATACAGCAACATTTACACGTAG--TAAGACTGGAATCTGGAAAGTCAACGATTCTCCGACCACACTGAGCT----GTCTAACATGAACGTTCTACATTTTAACCCAGATTAAGGTTATCAAAAACAGGCAATCGTCATTATCCCACA--ATCTTTA-TTC-TTA-AA-AATATGACCACCGACGTAACAGTGATCAATTAATTCACGCGACCGTAAAACATTGTGT-TT-TNAGACGATTTATTCGTGA-AA-TGTCACGA--AAATCACGAAT-GATA---ATATTT----------T---GG---TAACTCGTGTG--AGAAAA-----AAGTCTNNATCGTCTTCGACGCTCGCTTTTTCAAAAAAGCTTAGA---------------AAAGCAAGCGTCGCAGAT-GATCAA-G--AC-TAAAA--AAT-AGGGGANTT----CCCAAGTTACGGACTTATCCGAAGTTACCCGA---TTTT-TTCCGATTTCGTTATGGACGGAATAC
Alignments
lowQualScore : 222222 1111 111111 11111 111111 2222222222 11111 22222 1 1 2222 2222 1 33333 1 1 11111 222222 11 22222 666666666666666666 5555555555 33333 111 111 1111 111 11 1111 1 111 2222222222222222222 3333333333333333333 7777777777777777777777777777777777
lowQualScore : 3 888888 6 6 4444 6 6 6 6 6 999999 66666 1 222222 1 1 99 44 9999999999 1 8 8 1 88888 0 1 6 1 3 22222 2 3 3 3 1 3 7 22 8888 8888 3 11111 7 3 6 77 0 0 3 55555 1 888888 33 8 33333 1 999999999999999999 0 8888888888 33333 0 7 3 777 777 1 5555 9 777 0 0 2 0 99 1 0 0 33 0 0 2 444 7777 6 77 3 1 3 1 1 99 6 6 6 6 33 222 5555 1 33 5 5 1 5 5 77 5 1 777 5555555555555555555 3 6666666666666666666 77 2 2 0 555 3 8888888888888888888888888888888888 666 6 3 4 4 999999999 4 88 55 5 777 4
lowQualScore : . ...... . . .... . . . . . ...... ..... . ...... . . .. .. .......... . . . . ..... . . . . . ..... . . . . . . . .. .... .... . ..... . . . .. . . . ..... . ...... .. . ..... . .................. . .......... ..... . . . ... ... . .... . ... . . . . .. . . . .. . . . ... .... . .. . . . . . .. . . . . .. ... .... . .. . . . . . .. . . ... ................... . ................... .. . . . ... . .................................. ... . . . . ......... . .. .. . ... .
lowQualScore : 2 888888 7 7 2222 7 7 7 7 7 222222 77777 7 000000 7 0 22 55 2222222222 0 0 0 4 22222 6 0 4 2 2 00000 5 5 7 3 0 3 3 88 3333 7777 3 33333 3 3 7 00 0 8 2 22222 0 888888 88 8 88888 0 888888888888888888 7 7777777777 33333 7 3 7 555 555 0 5555 8 555 2 7 5 8 55 0 2 2 88 2 2 5 000 0000 0 77 7 7 5 7 0 22 7 7 7 7 11 999 9999 9 00 7 7 0 7 7 99 0 0 555 6666666666666666666 4 5555555555555555555 11 5 0 5 222 6 8888888888888888888888888888888888 444 1 6 0 0 666666666 0 99 55 7 000 0
consensus : TTCCATCCATAATACTCAATGTTTAAAAACTAAAAANAN---TTTTTACTTTCATTTTCCACATTAAATTCTGGATTCAATCCCAAA-T----T-T-T-AGGAACTTTTACCGTATATT-TTTT-CAGTTTTGGT------GTATTTTATAAGTATACC-----CCCTCTCTGTCCAAAGTACAATAATCTGACTCAAGTCTTCCATATTCATTTGGTTATTTTTTTTATTCATTT--CTTACAAAACATCTATTGTTATATACTAGTAAGTAGACAAAACATTGGAGATTA----------CAAATATGGCAAGAATATTTCATTACAGGATCAGAA-A-AAAATGTATG---TTAGATCTTCATATTCATTNATATCATAAAATGGGCATTTTACTTGTCATTTTAAAATAT----AACATATTGCAATAAGTAATCCTGACATCAAAATATAAAACGTACAGTAG-AAAAAGCACATTNA-CTTTTTTAATACATCAACTGATAATGCAAAAATACCAATATATTA----AACTTATACCGTCGT-AAAAT-TAAAAACA-A-TAGAATATTATA-CCCCTACCCCCTTTTTGACTTTTGCCAATTTTGCCAATTTTCGAATATTAACATGTTACAATACGTTGTCCC-GACATCAAATTATAAAACATACCATAGAAAAAGTATATCATCTTTCTTAATACATCAGCTGACAATGT-NA-AATACTNATACAT------CAAACTT--TCACCATC----TAAAACNT---------C-------TAGAATATTGTACCCCTACCCCATTTCGGCTTTTTGCCAATTTTG-C-AATTTC-AAGGGTTTCATGTTACAATTAGTTA-----GCCTGATATCAAATACTAGGTACGGCAGATCAAGCAAATTATCCTTCT---TAC---TATATCAATTATNTAGACTTTCTTCTGAAAAAAAAAACAACAA---CTAGTTTTGGGTTTACATCCGCCAATGTATGTCTGACGTTTGTCAGTATTTTGTCAATTCACATACAAATAACCACCGAGTCCCTTTTTCATTTCCCCAACACAATTTAAATGTCACTGNAAAGGGACATACAGCAACATTTACACGTAG--TAAGACTGGAATCTGGAAAGTCAACGATTCTCCGACCACACTGAGCT----GTCTAACATGAACGTTCTACATTTTAACCCAGATTAAGGTTATCAAAAACAGGCAATCGTCATTATCCCACA--ATCTTTA-TTC-TTA-AA-AATATGACCACCGACGTAACAGTGATCAATTAATTCACGCGACCGTAAAACATTGTGT-TT-TNAGACGATTTATTCGTGA-AA-TGTCACGA--AAATCACGAAT-GATA---ATATTT----------T---GG---TAACTCGTGTG-AGAA----AA--A----AGTCTNNATCGTCTTCGACGCTC--G-CTTTTT----C----AA-AAAA--G----CTT-AGA---AAAGC---AAGCGTCCCAGAT-GATCAA-GAC-T-AAAA--AAT-AGGGGAA-TT--CCCAAGTTACGGACTTATCCGAAGTTACCCGA---TTTT-TTCCGATTTCGTTATGGACGGAATAC
Reference ( family-266 ) : TTCCATCCATAATACTCAATGTTTAAAAACTAAAAANAN---TTTTTACTTTCATTTTCCACATTAAATTCTGGATTCAATCCCAAA-T----T-T-T-AGGAACTTTTACCGTATATT-TTTT-CAGTTTTGGT------GTATTTTATAAGTATACC-----CCCTCTCTGTCCAAAGTACAATAATCTGACTCAAGTCTTCCATATTCATTTGGTTATTTTTTTTATTCATTT--CTTACAAAACATCTATTGTTATATACTAGTAAGTAGACAAAACATTGGAGATTA----------CAAATATGGCAAGAATATTTCATTACAGGATCAGAA-A-AAAATGTATG---TTAGATCTTCATATTCATTNATATCATAAAATGGGCATTTTACTTGTCATTTTAAAATAT----AACATATTGCAATAAGTAATCCTGACATCAAAATATAAAACGTACAGTAG-AAAAAGCACATTNA-CTTTTTTAATACATCAACTGATAATGCAAAAATACCAATATATTA----AACTTATACCGTCGT-AAAAT-TAAAAACA-A-TAGAATATTATA-CCCCTACCCCCTTTTTGACTTTTGCCAATTTTGCCAATTTTCGAATATTAACATGTTACAATACGTTGTCCC-GACATCAAATTATAAAACATACCATAGAAAAAGTATATCATCTTTCTTAATACATCAGCTGACAATGT-NA-AATACTNATACAT------CAAACTT--TCACCATC----TAAAACNT---------C-------TAGAATATTGTACCCCTACCCCATTTCGGCTTTTTGCCAATTTTG-C-AATTTC-AAGGGTTTCATGTTACAATTAGTTA-----GCCTGATATCAAATACTAGGTACGGCAGATCAAGCAAATTATCCTTCT---TAC---TATATCAATTATNTAGACTTTCTTCTGAAAAAAAAAACAACAA---CTAGTTTTGGGTTTACATCCGCCAATGTATGTCTGACGTTTGTCAGTATTTTGTCAATTCACATACAAATAACCACCGAGTCCCTTTTTCATTTCCCCAACACAATTTAAATGTCACTGNAAAGGGACATACAGCAACATTTACACGTAG--TAAGACTGGAATCTGGAAAGTCAACGATTCTCCGACCACACTGAGCT----GTCTAACATGAACGTTCTACATTTTAACCCAGATTAAGGTTATCAAAAACAGGCAATCGTCATTATCCCACA--ATCTTTA-TTC-TTA-AA-AATATGACCACCGACGTAACAGTGATCAATTAATTCACGCGACCGTAAAACATTGTGT-TT-TNAGACGATTTATTCGTGA-AA-TGTCACGA--AAATCACGAAT-GATA---ATATTT----------T---GG---TAACTCGTGTG-AGAA----AA--A----AGTCTNNATCGTCTTCGACGCTC--G-CTTTTT----C----AA-AAAA--G----CTT-AGA---AAAGC---AAGCGTCGCAGAT-GATCAA-GAC-T-AAAA--AAT-AGGGGAN-TT--CCCAAGTTACGGACTTATCCGAAGTTACCCGA---TTTT-TTCCGATTTCGTTATGGACGGAATAC
gi|1 : TTCCATCCATAATACTCAATATTTGAAATCTAAAAAAAC---CTTTTACATTCATTTTACACATTAAATTTTGGATTAAATCCCAAA-T----T-T-T-AGGAACTTTTATCATATATT-TCTT-CAGTTTTGGT------GTATTTTATAAGTATACC-----CCCTCTTTGTCCAAAGTACAATAATCTGACTCAAA-CTTCAATATTCATTTGGTTATTTTTCTTATTTATTT--CTAACAAAAAATCTGTTGTTATATACTAGTAAGTAAACAAAAAATTGGAAATTA----------CAAATATGGCAAGAATATTTCATTACAGGATCAGAA-A-AAAAAAAAAAAAATTAGATCTTCATATTGATTAATATTATAAAATGGGCATTTTACTTGTCCTTTTAAAATATTTATAACAAATTGCAATAAGTAATCCTGACATCAAAATATAAAACATACAGTAG-AAAAAGCACATGGAACTTTTTTAATACATCAATTAATATTGCAAAAATACCAATATATTA----AACTTTTACCGTCAT--AAAT-TAAAAACATA-TAGAATATAATA-ACCCTACCCCCTTTTTAACTTTTGCCAATTTTGCCAATTTTCGAATATTAACATGTTGCAATACGTTGTCCC-GACATCAAATTATAAAATATACCAGAGAAAAAGTATATCATCTTTCTTAATACATCAGCTGACAATGTAAA-AATACTAATACTT------CAAACTA--TTACCATC----TAAAACAT---------C-------TAGAACATTGTACCCCAACTTCATTTTGGCTTTTTGCCAATTTTGAT-AATTTCAAAGGGTTTCATGTTACAATGAGTTACCAATACCTGATATCAAATACAAGGCACACCAGATCAAGCAAATTATCCTTCT---TAC---TATATCAATTATAAAGATTTTCGTCT----ACAAAAACAACAA---CTAATTTTGTGTTTACATCCGCCAATGTGTGTCTGCCATTTGTCAGTATTTTGTCATTTCACATACAAATAACCACCAAGTCGCTTTTTCACTTCCCCAACACAATTTAAATGCCACTGGAAAGGGACATACAGAAACATTTACACGTAG--TAAGACTGGAATCAAGAAAGTCAATGATTCTTCGACCTCACTGAGCTCACAGTCTAAAATGAACATTCTACATTTTAACCCAGATTAAGGTTATCATAAACAGGCAATTGCCACTATCCCACA--ATCTTAA-TCC-TTA-AACAATATGACCACCGACATAACAGTGTTCAATTAATTCATGCATCCGTAAAACGTTGTGT-TT-TAAGACGATTTATTCGTGA-AA-TATCATTA--AAATCAAGAAT-GATA---ATATTC----------T---GG---TAACTTGTGTGTAGAA----AATTA----AGTCTAAATCATCTTTGATGCTT--G-CTTTTT----CATA-AG-AAAA--G----CCTAAGA---AAACC---AAGCATTCCAGGT-GATCAA-GAT-T-AAAA--AATCAGGAGAT-TTCCCCCAAGTTACAGCCTTATGCGAAGTTACCTGA---TTTT-TTCCAATTTTGATATGGACGAAATAC
gi|10 : TTCCATGTGTAACGCTCAATGTT-AGAAACTAAAAAAAAAAATTTTTATTTTCATTTTCCACAATCAATTCTGAATACAAC-----A-T----T-T-T-AGGAACATTTAACGTATATTCTTTT-TAGTTTTGGT------GTATTTTATA------CA-----CCCTCTCGGTCCAAAGTACAAGAAAGTGACAGAAGCTTTTCATACTCAGTTGTTTA-TTTTTTTATTCCTTT--CTTACAAATCATATA---TTATACACtt
gi|11 : aCAAAT-GAAA---ATA------------------A---CAACTAGTGT-----A----GA--A----AGTC---ATCATC---GACGCAT--G-CCTTTT----CCTAAAA-AAAA--GAGNNNNN-NNN---NNNNN---NNNNNNNNNNNNN-NNNNNN-NNN-T-AGAT--ATT-AGGGGAA-TT--CCTAAGTTACGAACTTATCCGAAGTTACC--A------------GATTTCGTTATATATGGAA
gi|12 : aatattgtacccctagtcTCCATCCATAATACTCAGTGTTTAAAAACTAAAAAGAAAATTTTTTACATTCATTTTCCACTTTATATTCTGGATTCAATCCCAAAGT----T-T-T-AGGAATTTTTACTGTATATC-TTTT-CAGTTTTGGT------GTATTTT
gi|13 : aaAA--GT---CTA-AGA---AAAGC---GAGCGTTCCAGAT-GATCAA-GTC-T-AAAAAAAAT-AGGGGAG-TT--TCCAAGTCACGGACTTATCCGAAGTTGCCCGATTTTTTT-TTCTGATTTCGTTATGGACAGAATAC
gi|14 : agtagat----AGTCTCTATCAT-TTCGACGTTC--G-TTTTT------------------------CTC-A------AAGC---AAGCTTCGGAGAT-GATCAA-GAC-T---------T-AGGGAAA-T---CCCACGATACGGATTTAACCGAAGTTATCCGA---TTTT-
gi|15 : A----AA--A----AGTCTTGCTCATCCCCGACGCTT--G-CTTTT-----------A-AAAACCG----CTT-ATCTTTAATCC---AAGCGTCGCAGAT-GA-CAACGAT-T-Aatgca
gi|16 : ac----AGTCTAGATCTTCTGCAGCGCTT--G-ATTTTCAAGACTTAGAA-AAAA--A----ATT-AGA---AAAAC---AAGCGTCCCTAAT-GATC
gi|17 : TATTGTTATATACCATTAA-TAGACAAAACATTATAGATTA----------CACATAAGACAAGTATAGTTTATAACAAGATCAGAta
gi|18 : aAA--AAT-AGGGGAA-TT--CCCAAGTTACAGACTTTTCCAAAGTTA-CTGT---TTTT-TTCCGATTTCATTATGGACGGAATA
gi|19 : TATTCTTCTGACTACATGTATATCAATTATCTAGACTTTCTTCTGAAAAAAAA
gi|2 : TTCCATTCATTATACTCAGTGTTGAAAAACTAAAAACTC---TTTTTACTGTCTTTTAACACTTTAAATTCTGAATTCAATCCTAAA-T----T-T-TTAGGAACTTTTATCGTATATT-TTTTTCAATTTTGGT------TTATTTTACAAGTATACC-----CCCTCTGTGTGTAAGGTACAATATTCTGACTCAAGTCTTCCATATTCGTTT---T-TTTTTTTTATTAATTT--CTTACAAAACATCTTTTCTTATATACTAGTAAGTAGGCAAAACATTGGAGATTATAACAAAATACAAATACGGCACGAATATTCTATTTTATAATCAGAA-A-AAAATATA--------GATCGTCATATGCATTAATAT---AAAATGGGCATTTTATTTGTCACTTTAAA-TAT----GACATATTGTAATAC----TCCTGACATCAAAATATAAAAGGTACAGTAG-AGAAAGCACATTAA-CTGTTTTAATACATCAACTGATAATGCAAAAATACCAATATATCA----AACTTATACCGTCA--AAAAT-TAAAAACA-AATAGAATATTATA-CCACTACAACCGTTTTGACTTTTGCCAAATTTGCCAATTTTCGAAATTTAACATGTTACAATACGTCGCCCT-GACATCAAACTATAAAATATACCACAGAAAAAGT-CATCATCTTTCCTAATACATCAGCTGAAAATGT-GACAATATTTATACAT------CAAAGTTCATCAC-AT-----TGAAACAA---------T-------TAGAATATTGTACCCCTACCCCATTTTGGCTTTTTGTCAGTTTTG----------AAGGGTTTCATGTTACAATTAGTTA-----GCCTTTTATCAATTACTAGGTATGGCAGA-------------CCTTCA---TAC---TATATCAGTTATATAAACTTTCTTCTGAAAAAAAAAACAACAACATCTAGTGTTTGGTTTACATCCGCCAATGTATAT
gi|2 : AAAACAATTCAAAT-TCACTGGAAAGAGACATACAGTAATATTTACACATAG--TAAGACTGGAATCTAGAAAGTCAAACACTCTCCGACCATACTGACCT----GTCTAACATGATTG------ATTTTAA--------------A-CAAAAACAGGAAATCGTCATTAT---ACA--ATCTGTA-TTC-TTTTAA-AATATGACCACCGACGAAACAGTGATCAATTAATTCATGCAACCGTTAAACATTGTGG-TT-TTAGACGATTTATTCGTGA-AA-TGTCATGA--AAATCACGAAT-GATA---CAATTT----------T---GA---AAACTGGTGTGAAGAAAATTAA--A----AGTCTTAATCATTTTCAACGCTT--GATTTTTT----T----AATAAAAT-A----CTA-AGA---AAAGC---AAGCGTCCCAGAT-GATCAA-GGCTT-AAAA--CAT-AGGGAAT-TT--TCCAAGTTACGAACGTGTCCGAAGTTACCC-----TGTT-TTCCGATTTAATCATAGACGAAaaaaacaattcaaattcactggaaagagacatacagtaatatttacacatagtaagactggaatctagaaagtcaaacactctccgaccatactgacctgtctaacatgattgattttaaacaaaaacaggaaatcgtcattatacaatctgtattcttttaaaatatgaccaccgacgaaacagtgatcaattaattcatgcaaccgttaaacattgtggttttagacgatttattcgtgaaatgtcatgaaaatcacgaatgatacaattttgaaaactggtgtgaagaaaattaaaagtcttaatcattttcaacgcttgatttttttaataaaatactaagaaaagcaagcgtcccagatgatcaaggcttaaaacatagggaattttccaagttacgaacgtgtccgaagttaccctgttttccgatttaatcatagacgaa
gi|3 : ttccattcattatactcagtgttgaaaaactaaaaactctttttactgtcttttaacactttaaattctgaattcaatcctaaatttttaggaacttttatcgtatatttttttcaattttggtttattttacaagtataccccctctgtgtgtaaggtacaatattctgactcaagtcttccatattcgttttttttttttattaatttcttacaaaacatcttttcttatatactagtaagtaggcaaaacattggagattataacaaaatacaaatacggcacgaatattctattttataatcagaaaaaaatatagatcgtcatatgcattaatataaaatgggcattttatttgtcactttaaatatgacatattgtaatactcctgacatcaaaatataaaaggtacagtagagaaagcacattaactgttttaatacatcaactgataatgcaaaaataccaatatatcaaacttataccgtcaaaaattaaaaacaaatagaatattataccactacaaccgttttgacttttgccaaatttgccaattttcgaaatttaacatgttacaatacgtcgccctgacatcaaactataaaatataccacagaaaaagtcatcatctttcctaatacatcagctgaaaatgtgacaatatttatacatcaaagttcatcacattgaaacaattagaatattgtacccctaccccattttggctttttgtcagttttgaagggtttcatgttacaattagttagccttttatcaattactaggtatggcagaccttcatactatatcagttatataaactttcttctgaaaaaaaaaacaacaacatctagtgtttggtttacatccgccaatgtatataAAGTATATC-----CC-TCCCTGTCCAAAGTACAATAATCTGACTCAAGTCTTCCATATTCATTTGGTTACTTTT-TTATTCATTT--CTTACAAAACATATATTGTTATATACTAGTAAGTAGACAAAACATTGGAGATTA----------CAAATATGGCAAGATTATTTCATTACAGGATCAGAA-A-AAAATGTATG---TTATATCTTCATATTCATTCATATCATAAAATGAGCATTTTACTTGTCAATTTAAAATAT----AACATATTGCGATAAGTTATCCTGACGTCAAAATATAAAA
gi|3 : AAAATAT-AACATATTGCGATAAGTTATCCTGACGTCAAAATATAAAAG-------GAAT-CTATAACCCCAACCCCCTTTCTGACTTTTGCCAATTTTG-----------------GCATGTTACAATACATTGTCCCTGGCATCAAATTATAAAACATACCATAGGAAAAGTATATCATCTTTCTTAATACATCAGCTGACAATGT-TA-AATACTTATACATGTACATCAAACTT--TTACCATCGATCTAAAACTTGAAAAAAAAC--------AGAATATTGTACCCGTACCCCATTTCGACTTTTTGCCAATTTTG-CCAATTTCTAAGGGTTTCATGTTACAATTAGTTA-----GCCTGATATCAAATACTAGGTACAGCAGGTCAAGTAAATTATCCTTCT---TAC---TATATCAATTATCTAGACTTTCTTCTG--GAAAAAAAC--CAA---CTAGTTTTGGGTTTGCATCCGTCAATGTATGTCTGACGTTTGTCAGTATTTTGTCAATTCATATACAAATTACGACCGAGTCCCTATTTCATTTCCCGAACA------------CACTGTAAAGTGACATACAACAACATTTACATGTAGTATAAGACTGGAATCTGAAAAGTCCACGATTCTCC------------------GTCTTACATCAATGATCTACATTTTAACCCAGATTAATGTTATC-AAAACAGGCAATCGTCATTATCCCACA--ATCTTCA-TTCTTTA-AA-AATATGACCACCGACATAACAGTGATCAATTAATTCATCCAACTGTAAAACATTATAT-TT-TAAGACAATTTATTCATGA-AA-TGTCAAGA--AAATTACTAAT-GATA---ATATTT----------T---GG---TAACTCGTGTGTAGAA----A---------------ATCGTCTTCGGCGCTT--G-CTTTTT----CCTA-AG-AAAA--G----ggaatctataaccccaaccccctttctgacttttgccaattttggcatgttacaatacattgtccctggcatcaaattataaaacataccataggaaaagtatatcatctttcttaatacatcagctgacaatgttaaatacttatacatgtacatcaaacttttaccatcgatctaaaacttgaaaaaaaacagaatattgtacccgtaccccatttcgactttttgccaattttgccaatttctaagggtttcatgttacaattagttagcctgatatcaaatactaggtacagcaggtcaagtaaattatccttcttactatatcaattatctagactttcttctggaaaaaaaccaactagttttgggtttgcatccgtcaatgtatgtctgacgtttgtcagtattttgtcaattcatatacaaattacgaccgagtccctatttcatttcccgaacacactgtaaagtgacatacaacaacatttacatgtagtataagactggaatctgaaaagtccacgattctccgtcttacatcaatgatctacattttaacccagattaatgttatcaaaacaggcaatcgtcattatcccacaatcttcattctttaaaaatatgaccaccgacataacagtgatcaattaattcatccaactgtaaaacattatattttaagacaatttattcatgaaatgtcaagaaaattactaatgataatattttggtaactcgtgtgtagaaaatcgtcttcggcgcttgctttttcctaagaaaag
gi|4 : aagtatatccctccctgtccaaagtacaataatctgactcaagtcttccatattcatttggttacttttttattcatttcttacaaaacatatattgttatatactagtaagtagacaaaacattggagattacaaatatggcaagattatttcattacaggatcagaaaaaaatgtatgttatatcttcatattcattcatatcataaaatgagcattttacttgtcaatttATAATACGAAATGTTTAAAACCTAAAATT-C---TTTTTACTGTCATTTTCCACATTAAATGTTGGATTCAGTACCAAA-TAAATTAT-T-AAGAACATTTACCGTATATT-TTTC-CAGTTTCGGT------GTAATTTATTAGTTTACCGTGCCCCCTCTCTGTCCAAAGTACAAAAATCTGACCCAAGTCTTCCATATTCATTTGGTTATATTTTTTATTCATTT--CTTACAAAATGTCTATAGTTATATACTAGTAAGTAGACAGTACAATAGAGATTA----------CAAATATTACAAGAATATTTCATTACAGGACCAGAATA-AAAATGTATG---TTAGATCTTCATATTCATTTATATTATATAATGGGTATTTTACTTGTCATTTTGAAATAA----CACTTTTTGCAATAAGTAATCCTGACATCAAAATATAAAATGTACAGTAGAAAAAAGCATATTTA-C-TTTTTAATACATCACCTGATAATGCAAAAATAACAATA
gi|4 : gGAATATTAATATGTTACAATACATTGTCCC-GACAACAAATTATAAAGCAAATCATAGAAAAAGTATATCATCTTTCTTAATACATCAAGTGACAATG--CA-AATACTAATACAT------CAAACTT--ACACGATC----TAAAACTT---------CAAAAACTTAGAATATTGTACCCCTAacaataacattaacaagaatattaatatgttacaatacattgtcccgacaacaaattataaagcaaatcatagaaaaagtatatcatctttcttaatacatcaagtgacaatgcaaatactaatacatcaaacttacacgatctaaaacttcaaaaacttagaatattgtaccccta
gi|5 : gataatacgaaatgtttaaaacctaaaattctttttactgtcattttccacattaaatgttggattcagtaccaaataaattattaagaacatttaccgtatatttttccagtttcggtgtaatttattagtttaccgtgccccctctctgtccaaagtacaaaaatctgacccaagtcttccatattcatttggttatattttttattcatttcttacaaaatgtctatagttatatactagtaagtagacagtacaatagagattacaaatattacaagaatatttcattacaggaccagaataaaaatgtatgttagatcttcatattcatttatattatataatgggtattttacttgtcattttgaaataacactttttgcaataagtaatcctgacatcaaaatataaaatgtacagtagaaaaaagcatatttactttttaatacatcacctgataatgcaaaaataacaataacaataacattaacaaAAATTATAA---CTAGTTTTAGGTTTACATCCGTCAATGTATGTCTGACATTTGTCAGTAATTAATAAATTGACATACAAATAACCACCGAATCCCTTTTTCATTTCCCCAGCACAATTTAAATGTCACTGTTAAGGGACATACAACCACATTTACACGTAG--TAACACTGGAATCTGTAAAGTTAACGATTCTCCGACTACACTGAGCT----GTCTAGCATAAGCGTTCTACATTTTAA-CGAGATTAAGGTTATCAAAAACAGGTAATCTTCATTATCCCACA--CTCGTTATTTT-TTA-AA-AATATGACAATCGACATAACAGTGATCACATAATATATGCAGCCATAACACATTGTGT-TT-TACGACCATTTAATAGTAA-AA-TTTTACGA--AAATCACGAGT-GATA---ATATTG----------T---GG---TAATTCGTGTA-AAAATG--AA--A----AGTCTAAATCATCTTCGACGCTT--G-CTTTTT----CCCTAAG-AAAA--GT---CTT-AGA---AATGC---GAGCGTCATAGAT-GATCAA-GAT-T-AAAA--AAT-AGGGGA--TT--CCAAAGTTACGTTTTTATCCGAAGTTCCCCGA---TTTTATTCCGATTTATTTATGGACGGAATAC
gi|6 : ataacaccaaatcTTCCGTCCACAATACTCAATGTTTAAAAACTGAAAAAAA---TTCTTACTTTCACTTTCCACATTAAATTC------------CAAA-T----T-TAT-AGGAACTTTTACAGTATATT-TTTA-CAGTTTTCGTATACATGTATTTCATAAGTATGCC-----CTCTCTCTGCCCAAAGTACAATATTCTGACTCA-GTCTCTCATATTCATTT--------TTTTTAT--ATTTAACTCACAGA----CCATTGTTATATACAGGTAAGTAAACTAAAAATTGGAGATTA----------CAAATATGGCAAGAATATTTCATAACATGATCAGAA-ATTTAGTTTATG---TGAGATCTTCATATTCATTTATAACATAAAATTGGCATTTTACATGTC
gi|7 : GTT----GTTTAACATGAACATTCTTTATTTTAACACAGATTTAGGTAAACAAAAACAGACAATCGTCATTATTCCACA--TTTTTTA-TTC-TAT-AA-AGCATGACCGCCGGCATAACAG-GATC----ACTTCACA-----GTAACATATTGTGT-TT-TTAGGCAATTTATTTGGGA-AA-TGTAACGA--AAATCATGAAT-AAGA---ATATTT----------T---GA---TTA-TTGTGTA-AAAAAAT-AA--A----AGTCTAAAGCGTCCTGGATGATCAAG-CCTT-----------AA-AAAA--
gi|7 : ----AA-AAAA-----------ATA---AAAGTCTAAAGCGTCCTGGAT-GATCAA-GCC-TTAAAA--AAT-AAGGGAAATT--TCCAAGTTACGGATTCATCCGAAGTTA-TCGA---TTTT-TTCCGATTCCGATATGGACGGAATGCtaagggaaatttccaagttacggattcatccgaagttatcgattttttccgattccgatatggacggaatgcc
gi|8 : gttgtttaacatgaacattctttattttaacacagatttaggtaaacaaaaacagacaatcgtcattattccacattttttattctataaagcatgaccgccggcataacaggatcacttcacagtaacatattgtgtttttaggcaatttatttgggaaatgtaacgaaaatcatgaataagaatattttgattattgtgtACATTTTAACTCGTGTTTTGGTTA-CTAAAACGTGCAGTCGTCA--ACCTCACACTACCCTTC-TTC-TTA-AC---CATGACCACCTACATAACG--------------CACGCGATCTTAAAACGTGGTAT-TTCTAAAACGATTTATTCGAGATAC-TCTCGCGA--AAATCACG--TCGACAGCCATATTT----------T---TGACATAAC----GGG-AG----------T----AGTTTTTATCAT-TTCGACGTTC--G-CTTTT------------------------CTC-------GAGGT---AAGCGTCGCAGATAAATCAA-GAC-T---------T-AGGGGAG-TT--CCCATGTAACAGATTTA----A------TCGA---TTTT-TGCCGATTCCc
gi|9 : ACCGACG--ACATT-ATCAATAAACACACGTGACCTTAAA-CATTGTGTATC-TTAGACGATTTCTTCGTAA-AACTGTCACGAGAAAATCACGAAC-GGCAGCCATACTTGGCTCATCACTAAAGG---TATCTCTTGTC-GTAA----AA--AGAGTAGTTTGTGTAGTTTT-GATGTTC--G-CCTTT------------------------CT----A---AAAGC---AAACGTTTCAGAT-AATCAA-GAC-T-CGGA--A------GGAA-TT--CCAAAGTTACGGATTTATCCGAAGTTATCTGC---TTTT-TGCCGATTTCGTTAaactttgtcagtatgatcaacactaca