lowQualScore : 11111111111111111111111111111111111111111111 111111
lowQualScore : 888888888888888888888888888888888888888888888888888888888 1 55555555 11 444444444444444 22 22222 1 1 11 1 1 1 111 77777777777777777777777777777 22222 1 1 1111111 1 2222222 222222 1 00000000000000000000000000000000000000000000 1 2222 333 11111111 111 111 1 1 1 222222 3333333333 1 11 2 99999999999 11 1 111111 1 6666666 11 44444 1
lowQualScore : 6 6 6 6 99999 0 444444444444444444444444444444444444444444444444444444444 4 6 6 0 1 4 6 1 0 22222222 1 11 333333333333333 0 44 00 1 0 0 77777 8 0 0 99 2 0 0 0 777 00000000000000000000000000000 44444 1 5 5 4 4 6 0 0 0 0 3 2 0 9999999 1 1 1 6 99 6666666 888888 7 6 66666666666666666666666666666666666666666666 4 0 4 3 7777 444 99999999 99 111 3 0 000 3 0 2 1 0 555555 3 6666666666 5 88 0 55555555555 6 22 6 6 7 6 555555 6 5 6 5555555 4 4 2 2 6 3 6 00 6 44444 5 6
lowQualScore : . . . . ..... . ......................................................... . . . . . . . . . ........ . .. ............... . .. .. . . . ..... . . . .. . . . . ... ............................. ..... . . . . . . . . . . . . . ....... . . . . .. ....... ...... . . ............................................ . . . . .... ... ........ .. ... . . ... . . . . . ...... . .......... . .. . ........... . .. . . . . ...... . . . ....... . . . . . . . .. . ..... . .
lowQualScore : 0 7 7 7 66666 3 222222222222222222222222222222222222222222222222222222222 3 7 2 5 2 3 2 2 3 55555555 4 00 888888888888888 8 88 88 0 8 2 22222 8 0 0 22 5 5 0 0 555 55555555555555555555555555555 66666 0 4 0 0 0 0 8 2 2 2 2 5 0 0000000 8 4 4 0 88 0000000 888888 0 0 00000000000000000000000000000000000000000000 0 0 0 2 8888 222 88888888 22 444 2 8 000 0 5 5 2 0 888888 2 5555555555 5 33 0 00000000000 0 00 0 0 0 0 000000 0 0 0 0000000 0 0 5 5 0 0 0 00 0 00000 0 0
consensus : GGCCCGTAGCTAGACCTTAA-AA-A-CAGGGAGGCCGATTCT--A--GGGG---TT-TGGGNG--------NGT-------GT----C----C--AGAATAA--AAT-TGGGCGAGGATGCCATTTCNTGCTTTTTCCTNCATTTCAGAACCTATTTT--------GCCCATTTGGAGGTAT--TGATTTTGGATAC-TTTTTT-----TAATATCAAGACCAAAAAATCTGGGGTT---TTACAAATAATCACCAAATGACAACAAAT-AA-AAAATNCACAAANACATCTNATTTA-TT-AGATCTATACTCT---CA--NTATATTTTTAGCAAATAAAAT--GA-TTGATACATGCATGCAAATGTCATGCAATGCGCGTTCATGCATATAGATTCACANAAGTCTAAATTGNACAAGTGTGTAGCATAAGTCTTAAAATCAATTCTTTGAGGCTGAAATTCAAAACATT---T---AAGTATTAGACTAAGCATTCACCAACGTCTATCTGATAACAAATTGTGACGATTTGCTAATTATTAGTCGAACATTAGATTATTGATGT-------TATCAAAGG------CATACAAGCACAGCAATAGTTCATATAGTCATATTTAGTATCTTTCTTAAATGTATTATGATGATAAAATCCAAATGTTC---------------------AAT--------------------TCNTTATT-CCNATTTCTTAATTCTAAATGATNCGTTCAAA---ATTC---AT---GCCAAATGCCTGATTCTAAA-TACTTGATTATCA-T-TGTATATANTTTGTATANTGTTTTATTC-TTAATTTCTATTTCTTAGTTCTAAATGA----TAC---ATTCTTCATGCCAAAATGAATGGGTTAATTC--TTTACGCCTGTTTAACGGTAGTGGTAATGGTAGTGGTAACTGTGATTGTGATATTGTTTATGATGGTGGAAGTAATGGTGATAGTGTTTGTGATAAAGATAATGGTAATGG------TATTGGTAGGTGTAGTTGTAGTGACAGTGTCATTGGTAGTGGCAGTTGNTANTGTAGTTGTTGTGATGNTGGTTNTAGTNGTGACAGTGGTNGTGATAATTTTAATGATAATGCTAATATAATTGTAA
Reference ( gi|2 ) : GGCCCGTAGCTAGACCTCAA-AA-A-CAGGGAGGCCGATTCT--A--GGGG---TT-TGGGAG--------GGG-------GT----C----C--AGAATAA--AAT-TAGGCGATGATACCATTTCTTACGTTTTCCTACATTTCAGAAGCTATTTT--------GCCCATTTGGAGGTAT--TGATTTTGGATACGTTTTTT-----TAATATCAAGTTCAAAAAATCTGGGGGT---TTACAAATAATCACCAAATGACAACAAAT-AA-AAAACGCACAAAGATATCTCATTTA-TT-AGATCTATACTCT---CA--TTTT-TTTTTAGCAAATAAAAT--GAGTTGATATATGTATGCAAATGTAATGCAATGTTCGTTCATGCATATAGATTCACAAAAATCTAAATTGAACAAGTGTGTAGCATAAGTCTTAAGATCAATTCTTTGAGGCTGAAATTCACAACATT---T---AAGAATTAGACTAAGCATTCACCAACGTCTATCTGATAACAAATTGTGACAATTTGCTAATTATTAGTTGAACATTAGATTATTGATGT-------TATCAAAGG------CATACAAGCACAGCAATAGTTCATATAGTCATATTAAGTATCTTTCTTAAATGTATCATGATGATAAAATCCAAATGTTC---------------------AAT--------------------TTTTTATT-CCAATTTCTTAATTCTAAATGATTTTTTCAAA--CATTC---AT---GCCAAATGTCTGATTCTAGA-TACTTGATTATCA-T-TGTATATAATTTGTTTACTGTTTTATTC-TTACTTTGTATTTCTTAGTTCTAAATGA----TTC---ATTCTTCATGCCAAAATGAATGGGTTAATTC--TTTATGTCT-TTT-----------TAATAGTAGTGGTAGTTATGATTGTGATATTGTTTATGATGGTGGAAGTAGTGGTGATAGTGTTTGTGATAATGATAATGATAATGGTAATGTTATCGGTAGGTGTAGTGGTAGTGACAATGTCA-------TGGCAGTTAATATTGTAGTTGTTGTGATGGTGGTTGTAATAGTGACAATGGCAGTGGTTGTGGTAATGCTAATGCTAATATAATTATAA
gi|4 : GGTCCGTAGCTAGACCTTAA-AA-A--AGGGAGGCAGATTNN--N--NNNN---NN-NNNNNN--------NNN-------NN----N----N--NNNNNNN--NNN-NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCCCATTTGGAGGTAT--TGATTTTGGATAC-TTTTTT-----TA-TACCAAGACCAAAAA--------------------TAATTACCGAATGACAACAAAT-CACAAAATTCACAAATACATCTAATTCA-TTCAGATCTATACTCT---CA--CCATACTTTT-----------------TTGATACATG----CAAATGTCATGCAATGCGCATTGATGCATATAGACTCACATCAATCTAAATTGTACAAGTGTGTAACGTAAGTCTTTAAATCAAATATTTGAGACAAAAA-----AACATTTGGT---AAGTATTACACTAAACATTCACCAACGTCTATCTGATAATAAATTGTGAGGATTTGCTATTTATAAGTCGAACATTATACTG-TAATAT-------TATCAAA
gi|6 : GGCCCGTAGATAGACCTTAA-AA-AACAAGGTGACCGATTCT--A--GGGGGTCTTATGGGCA--------TGTTC-----GC----C----C--AGAA-AATGAAT-TGGGCGAAGATTCAATTTCTTGCGTTTTCTTACATTTCAGAACCTATTTT--------GCCCATTTTAA--TATTCTGTTTTT-------TTTTCTATAAATAATAACAAA-TCAAATAAT
gi|13 : GACCCGTAGCTAGAGCTTAA-AAAA-CAGGGAGGCCTATTCTAAA--GGGG---TG-TGGG-G--------GAT-------GTTCCCC----C--AGAAtcataaagaaaatatgagttgatacatgtataaaagtgtcatgcaatgtgcgttcatgcatatagattcacataagtctaaattgtacacgtgtgtaacataagtcttaaaacaagattttgtctagcaaaaggttccttctagcgcat
gi|12 : GCCCGTAGTTAGACATTAA-AC-A-CAGGGAGACCGATTCT--A--G--------------G--------AGG-------GT----C----TGAAGAAT------T-TGGGCGAGGATGCTATTTTCTGCTTTTTTCT
gi|11 : CCGTAGCAAGACTTTAATAA-A-CAGGGAGGCCGATTCT--ATGGGGG---TT-TGGGGA--------CAT-------GT----CTTCAC--AGAGTTT--CTT-TGGGAGAGGATGACATTTCATGCCTTTTCCTGCTTTTCAAAGCCTATTTTCAA-----GCCCGTCTg
gi|5 : tCCTTAA-AA-A-CAGGGAGTCCGATTNN--N--NNNN---NN-NNNNNN--------NNN-------NN----N----N--NNNNNNN--NNN-NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN---GTCCATTTGGAGGTTT--TGATTTTGGATA--TTTGTT-----TTATATCAAGACAAAAAAATCTGGGGATATTTTACAAATAATCACCAAATTACAACAAATCAA-AAAATTCACAAATACATCATATTTATTT-AAATCTATGCTCTCAACA--TATT-TTTT--GTAGAT----------TTGATA----CATGCAAATGTCACGCAATGCGCATTCATGCATTTAGATTCAC
gi|1 : T--A--GGGG---TT-TGGGAGTGGTCTCGGGGCATGCTCGC----C----C--AGAA-AA--AATATGGGCGATGATGCCATTTCTTGCTTTTTCCTACACTTCAAAACCTATTTT--------GCCCATTTGGAGGTTT--TGATTTTGGA---------------TAAT--------------ATCTGAGGTT---TTACAAATAATCACAAAATGACAACAAAT-AA-AAAA-GCACACAGATATCTGATTTA-TT-AGATCTATACTCT---CAACATAT-TTTTTAGCAAATAAAGT--TATTTGATA----CATGCAAATGTAATGCAACGTGCGTTCATTCATAACGATTCACAAAAATCTAAATTGAACAAGTGTGTAGCATAAAACCTAAAATCAATTCTTTAAGGCTGAAATTAAAAACATT---T---ATGTATTAGACTTAGCATTCACCAACGTCTTGCTGATAACAAATTGTAGCAATTTACTAATAATAAGTCGAACATAAGATTATTAATGT-------TATCAAAGG------CATACAAGCACAGCAATAGATCATATAGTCATATTTAGTATCTTTCTTAAATGTATTATGATGATAAAATCCAAATGTTC---------------------AATTGAATATGGTTAACGTTTAATTTTTATT-CAAATTTCTTAATTCTAAATGACTTATTTAAA--CATTC---AT---GCTAAAT-CCTGATACTAGA-TACTTGATTATCA-T-TGTATATAGTTTGTATACTGTTTTATTT-TTAATTTCTATTTTTCAGTTCTAAATGA----TAC---ATTCTTCATGCC-AAATGAATGGGTTAATTC--TTTATGTCTGTTTAACGGTAGTGGTAATGGTAGTGGTAACTGTGATTGTGATATTGTTTATGATGGTGGAAGTAATGGTGATAGTGTTTGTGATAAAGATAATGGTAATGG------TATTGGTAGGTGTAGTTGTAGTGACAGTGTCATTGGTAGTGGCAGTTAATATTGTAGTTGTTGTGATATTGGTTTTAGTCGTGACAGTGGTTGTGATAATTTTAATGATAATGCTAATATAATTGTAAttcaatcacttcaacattttataagtattagactaagcattcacaaagctctatctgataacaaattgtgaggatttgctgtttgttagtccaacattatatcttgatgttaccaaaggc
gi|3 : CTTCATTTCAGAACCTATTTT--------GCCCATTTGGAGGTAT--TGATTTTGGATAC-TTTTTT-----TAATATCAAGTCCAAAAAATCTGGGGTT---TTACAAATAATCAC-AAATGACAACAAAT-AA-AAAAAGTCCAAAGATATCTTATTTA-TA-AGATCTATACTCT---CA--ATATATTTTTATCACATAAAAT--G--------TATGTAAGCAAATGTAATGCAATGTGCGTTCATGCATATAGATTCACAAAAGTCTAAATTGAACAAGTGTGTGGCACAAGTCTTAAAATCAATTCTTTGAGGCTGAAATTCAAAATATT---T---AAAAATTTGACTAAGCATTTACCAACGTCTATCTGATAACAAATTGTGACAATTTGCTAATTATTAGTCGAACATTAGATTATTGATGT-------TATCAAAGG------CATACAAGCACAGCAATAGTTCATATAGTCATATTTAGTATCTTTCTTAAATGAATTATGATGATAAAATCCAAATGTTCAATTGAATATGCTTAATGTTTAAT--------------------TTTTTATT-CCAATTTCTTAATTCTAAATTA-TTGTTCAAA---ATTC---AT---GCCAAATGCCCGATTCTAAA-TACTTGATTATCA-T-TGTATATAATTTGTATACTGTTTTACTC-TTAATTTCTATTTC-TAGTTCTTAATGA----TAC---ATTCTTCATGCC-AAGTGAATGGGTTAATTC--TTTATGnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngcacg
gi|6 : AAAGAAAATATGAGTTGATACATGTATAAAAGTGTCATGCAATGTGCGTTCATGCATATAGATTCACATAAGTCTAAATTGTACACGTGTGTAACATAAGTCTTAAAA-CAA
gi|8 : ggcccgtagatagaccttaaaaaacaaggtgaccgattctagggggtcttatgggcatgttcgcccagaaaatgaattgggcgaagattcaatttcttgcgttttcttacatttcagaacctattttgcccattttaatattctgtttttttttctataaataataacaaatcaaataattcatTCAGTTTTTTTAGACTTAAATTCAAAACATT---T---AAGTATTAGACTAAGCCCGCCCCAACAACTATCTGATAACAAATTCTGACGATTTGCTAATTATTAGTCAAACATTAGATTAATGATGTTACAATGTATCAAAGGCAGGCACATACACATACAGTAAAAGTTCATATAGTCATATTTAGTATATTTCCCAAATGTAATATGATGTTAAAATGTAAATGTTC---------------------AAT--------------------Tgattttgtctagcaaaaggttccttctagcgcat
gi|5 : CAACATT---TTATAAGTATTAGACTAAGCATTCACAAAGCTCTATCTGATAACAAATTGTGAGGATTTGCTGTTTGTTAGTCCAACATTATATC-TTGATGT-------TACCAAAGG------Cgaatacgctttaatacgttga
gi|9 : ccttaaaaacagggagtccgattnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngtccatttggaggttttgattttggatatttgttttatatcaagacaaaaaaatctggggatattttacaaataatcaccaaattacaacaaatcaaaaaattcacaaatacatcatatttatttaaatctatgctctcaacatattttttgtagatttgatacatgcaaatgtcacgcaatgcgcattcatgcatttagattcacttcaatcacttAATGTTT---------------------AAT--------------------TCATTATT-TCTATTTCTTCATTA-AAATGATACGTTCTAA---ATTG---ATAATGGCATATGCCTGGTTCTAAG-TGTTTTATTATCA-CCTGTACATACTTTGCATAGTGTTTTAATC-TT------CATTTCTTAGTGCTAAATGA----TAA---ATTCTTCATGTCAAGATTAGTTCTTTAATTCTATTTACACTT-TTT-----------TAA
gi|10 : ccgattgagtatgcttAATGTTT---------------------AAT--------------------TCATTATTTCCTATTTCTTAATTCTAAATGATAAGTTCAAA---ATTCTTAAT---ACCAAATACCTAGTT--------CTTGATTACCATT-TGTATAaatcaccggttttgcataataaatattt
gi|10 : ttgaaagccagcgggttcaaaattgttctgttgaatgcataattctaaagtataaatgttgaatatatttTTCAAAATTGTTC----T---GTTGAATGCATAATTCTAAAGTA--TAA--AT-G-T-TGAATATA-----TTTAATGTTTAATTCATTATTTCCTATTTCTTAATTCTAAATGATAAGTTCAAAATTCTTAATACCAAAga
gi|7 : ttgaaagccagcggg-------TGGCAGTTGTTAATGTAGTTGTTGTGATGGTGGTTGTAGTAGTGACAGTGGTAGtacctagttcttgattaccatttgtataga
3 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|14 ): AATTATACATTATTTCTGATAGTTACATGCACATCATTATCTGGTGACGTTAAAGC
Unaligned ( gi|15 ): TTATCAGAAATAAATTAAATAACATAATTTGTGTTTGTCCTATAAAAGCATAAAC
Unaligned ( gi|16 ): TACATGGCAACAATTCATATTTATGTGATTCAGTT
Alignments
lowQualScore : 666666666666666666666666666666666 2222222 44444444 11 11111111 1111 11 1 333333333333333333 3333 1111 1111111 2222222 222222 77777777777777777777777777777777777777777777777 11 1 111111111111 22222222 11 1 33333333333 555555 2222
lowQualScore : 5 5 5 77777 66 888 5 222222222222222222222222222222222 3333333 5 2 1 2 1 55555555 99 11 88888888 66 4444 5 8 8 00 1 1 6 111 666666666666666666 6 0000 2 0 4444 1 2 6 1 0 0 4444444 55 1111111 333333 55555555555555555555555555555555555555555555555 77 8 1 0 22 3 999999999999 1 6 1 666 1 0 1 1 8 66 0 66666666 0 7 33 2 0 5 00000000000 4 777777 3 3333 11 1 1 1 1 1 4 66 3
lowQualScore : . . . ..... .. ... . ................................. ....... . . . . . ........ .. .. ........ .. .... . . . .. . . . ... .................. . .... . . .... . . . . . . ....... .. ....... ...... ............................................... .. . . . .. . ............ . . . ... . . . . . .. . ........ . . .. . . . ........... . ...... . .... .. . . . . . . .. .
lowQualScore : 7 7 7 22222 99 888 0 222222222222222222222222222222222 0000000 7 6 0 9 0 00000000 22 88 00000000 22 6666 0 0 0 00 0 0 0 888 555555555555555555 7 3333 5 7 2222 0 2 7 0 8 8 3333333 22 7777777 000000 33333333333333333333333333333333333333333333333 44 0 0 8 44 3 333333333333 0 7 0 888 0 8 0 0 0 66 8 00000000 8 0 88 0 7 0 33333333333 0 555555 0 5555 77 0 0 0 0 0 0 00 0
consensus : GGCCCGTAGCTAGACCTTAA-AA-A-CAGGGAGGCCGATTCT--A--G--GGG---TT-TGGGGGNG---------------T--GT----C----CAGAATAA--AAT-TGGGCGANGATGCCATTTCTTGCNTTTTCCTACATTTCAGAACCTATTTT--------GCCCATTTGGAGGTAT--TGATTTTGGATAC-TTTTTT-----TAATATCAAGACCAAAAAATCTGGGG---TTTTACAAATAATCACCAAATGACAACAAAT-AA-AAAACGCACAAAGATATCTNATTTATT-AGATCTATACTCTCAACATATTTTT-AGCAAATAAAAT--GA-TT-GATACATGTA-GCAAATGTNATGCAATGCGCGTTCATGCATATAGATTCAC----ANAAATCTAA-ATTGNACAAGTGTGTAGCATAAGTCTTAAAATCAATTCTTTGAGGCTGAAATTCAAAACATT---T---AAGTATTAGACTAAGCATTCACCAACGTCTATCTGATAACAAATTGTGACGATTTGCTAATTATTAGTCGAACATTAGATTATTGATGT-------TATCAAAGG------CATACAAGCACAGCAATAGTTCATATAGTCATATTTAGTATCTTTCTTAAATGTATTATGATGATAAAATCCAAATG---------------------TTCAA---------------------TTCTTTATT-CCAATTTCTTAATTCTAAATGATTCGTTCAAA-ATT---C---AT---GCCAAATGCCTGATTCTAAA-TACTTGATTATCA-T-TGTATATANTTTGTATACTGTTTTATTC-TTANTTTCTATTTCTTAGTTCTAAATGATA----C---ATTCTTCATGCCAAAATGAATGGGTTAATTC--TTTACGTCT-TTTAACGGTAGTGGTAATGGTAGTGGTAGCTGTGATTGTGATATTGTTTATGATGGTGGAAGTAGTGGTGATAGTGTTTGTGATAANGATAATGGTAATGGTAATGTTATCGGTAGGTGTAGTNGTAGTGACAGTGTCATTGGTAGTGGCAGTTAATATTGTAGTTGTTGTGATGGTGGTTGTAGTAGTGACAGTGGTAGTGGTNGTNNTAATGNTAATGCTAATATAATTGTAA
Reference ( family-2614 ) : GGCCCGTAGCTAGACCTTAA-AA-A-CAGGGAGGCCGATTCT--A--G--GGG---TT-TGGGNGNG---------------T--GT----C----CAGAATAA--AAT-TGGGCGAGGATGCCATTTCNTGCTTTTTCCTNCATTTCAGAACCTATTTT--------GCCCATTTGGAGGTAT--TGATTTTGGATAC-TTTTTT-----TAATATCAAGACCAAAAAATCTGGGG---TTTTACAAATAATCACCAAATGACAACAAAT-AA-AAAATNCACAAANACATCTNATTTATT-AGATCTATACTCTCANTATATTTTT-AGCAAATAAAAT--GA-TT-GATACATGCATGCAAATGTCATGCAATGCGCGTTCATGCATATAGATTCAC----ANAAGTCTAA-ATTGNACAAGTGTGTAGCATAAGTCTTAAAATCAATTCTTTGAGGCTGAAATTCAAAACATT---T---AAGTATTAGACTAAGCATTCACCAACGTCTATCTGATAACAAATTGTGACGATTTGCTAATTATTAGTCGAACATTAGATTATTGATGT-------TATCAAAGG------CATACAAGCACAGCAATAGTTCATATAGTCATATTTAGTATCTTTCTTAAATGTATTATGATGATAAAATCCAAATG---------------------TTCAA---------------------TTCNTTATT-CCNATTTCTTAATTCTAAATGATNCGTTCAAA-ATT---C---AT---GCCAAATGCCTGATTCTAAA-TACTTGATTATCA-T-TGTATATANTTTGTATANTGTTTTATTC-TTAATTTCTATTTCTTAGTTCTAAATGATA----C---ATTCTTCATGCCAAAATGAATGGGTTAATTC--TTTACGCCTGTTTAACGGTAGTGGTAATGGTAGTGGTAACTGTGATTGTGATATTGTTTATGATGGTGGAAGTAATGGTGATAGTGTTTGTGATAAAGATAATGGTAATGG------TATTGGTAGGTGTAGTTGTAGTGACAGTGTCATTGGTAGTGGCAGTTGNTANTGTAGTTGTTGTGATGNTGGTTNTAGTNGTGACAGTGGTNGTGATAATTTTAATGATAATGCTAATATAATTGTAA
gi|1 : T--A--G--GGG---TT-TGGGAGTGGTCTCGGGGCATGCTC--GC----C----CAGAA-AA--AATATGGGCGATGATGCCATTTCTTGCTTTTTCCTACACTTCAAAACCTATTTT--------GCCCATTTGGAGGTTT--TGATTTTGGATA-----------------AT------------ATCTGAGG---TTTTACAAATAATCACAAAATGACAACAAAT-AA-AAAA-GCACACAGATATCTGATTTATT-AGATCTATACTCTCAACATATTTTTTAGCAAATAAAGT--TA-TTTGATACATGCA----AATGTAATGCAACGTGCGTTCATTCATAACGATTCAC----AAAAATCTAA-ATTGAACAAGTGTGTAGCATAAAACCTAAAATCAATTCTTTAAGGCTGAAATTAAAAACATT---T---ATGTATTAGACTTAGCATTCACCAACGTCTTGCTGATAACAAATTGTAGCAATTTACTAATAATAAGTCGAACATAAGATTATTAATGT-------TATCAAAGG------CATACAAGCACAGCAATAGATCATATAGTCATATTTAGTATCTTTCTTAAATGTATTATGATGATAAAATCCAAATGTTCAATTGAATATGGTTAACGTTTAA---------------------TT-TTTATT-CAAATTTCTTAATTCTAAATGACTTATTTAAACATT---C---AT---GCTAAAT-CCTGATACTAGA-TACTTGATTATCA-T-TGTATATAGTTTGTATACTGTTTTATTT-TTAATTTCTATTTTTCAGTTCTAAATGATA----C---ATTCTTCATGCCAAA-TGAATGGGTTAATTC--TTTATGTCTGTTTAACGGTAGTGGTAATGGTAGTGGTAACTGTGATTGTGATATTGTTTATGATGGTGGAAGTAATGGTGATAGTGTTTGTGATAAAGATAATGGTAATGG------TATTGGTAGGTGTAGTTGTAGTGACAGTGTCATTGGTAGTGGCAGTTAATATTGTAGTTGTTGTGATATTGGTTTTAGTCGTGACAGTGGTTGTGATAATTTTAATGATAATGCTAATATAATTGTAA
gi|10 : GTTCAAA-ATTGTTC----T---GTTGAATGCATAATTCTAAAGTA--TAA--AT-G-T-TGAATATATTT-----AATGTTTAATTCATTATTTCCTATTTCTTAATTCTAAATGATAAGTTCAAAATTCTTAATACCAAAnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngcacg
gi|10 : ttgaaagccagcggAATG---------------------TTTAA---------------------TTCATTATTTCCTATTTCTTAATTCTAAATGATAAGTTCAAA-ATT---CTTAAT---ACCAAATACCTAGTT--------CTTGATTACCATT-TGTATAtacctagttcttgattaccatttgtataga
gi|11 : ttgaaagccagcgggttcaaaattgttctgttgaatgcataattctaaagtataaatgttgaatatatttCCGTAGCAAGACTTTAATAA-A-CAGGGAGGCCGATTCT--ATGG--GGG---TT-TGGGGACA---------------T--GT----CTTCACAGAGTTT--CTT-TGGGAGAGGATGACATTTCATGCCTTTTCCTGCTTTTCAAAGCCTATTTTCAA-----GCCCGTCTga
gi|12 : tGCCCGTAGTTAGACATTAA-AC-A-CAGGGAGACCGATTCT--A--GGAGGG---TC-TGA-----------------------------------AGAAT------T-TGGGCGAGGATGCTATTTTCTGCTTTTTTCT
gi|13 : GACCCGTAGCTAGAGCTTAA-AAAA-CAGGGAGGCCTATTCTAAA--G--GGG---TG-TGGGGGA----------------T--GTTCCCC----CAGAAg
gi|2 : GGCCCGTAGCTAGACCTCAA-AA-A-CAGGGAGGCCGATTCT--A--G--GGG---TT-TGGGAGGG---------------G--GT----C----CAGAATAA--AAT-TAGGCGATGATACCATTTCTTACGTTTTCCTACATTTCAGAAGCTATTTT--------GCCCATTTGGAGGTAT--TGATTTTGGATACGTTTTTT-----TAATATCAAGTTCAAAAAATCTGGGG---GTTTACAAATAATCACCAAATGACAACAAAT-AA-AAAACGCACAAAGATATCTCATTTATT-AGATCTATACTCTCATT-TTTTTTT-AGCAAATAAAAT--GAGTT-GATATATGTATGCAAATGTAATGCAATGTTCGTTCATGCATATAGATTCAC----AAAAATCTAA-ATTGAACAAGTGTGTAGCATAAGTCTTAAGATCAATTCTTTGAGGCTGAAATTCACAACATT---T---AAGAATTAGACTAAGCATTCACCAACGTCTATCTGATAACAAATTGTGACAATTTGCTAATTATTAGTTGAACATTAGATTATTGATGT-------TATCAAAGG------CATACAAGCACAGCAATAGTTCATATAGTCATATTAAGTATCTTTCTTAAATGTATCATGATGATAAAATCCAAATG---------------------TTCAA---------------------TTTTTTATT-CCAATTTCTTAATTCTAAATGATTTTTTCAAACATT---C---AT---GCCAAATGTCTGATTCTAGA-TACTTGATTATCA-T-TGTATATAATTTGTTTACTGTTTTATTC-TTACTTTGTATTTCTTAGTTCTAAATGATT----C---ATTCTTCATGCCAAAATGAATGGGTTAATTC--TTTATGTCT-TTT-----------TAATAGTAGTGGTAGTTATGATTGTGATATTGTTTATGATGGTGGAAGTAGTGGTGATAGTGTTTGTGATAATGATAATGATAATGGTAATGTTATCGGTAGGTGTAGTGGTAGTGACAATGTCA-------TGGCAGTTAATATTGTAGTTGTTGTGATGGTGGTTGTAATAGTGACAATGGCAGTGGTTGTGGTAATGCTAATGCTAATATAATTATAA
gi|3 : CTTCATTTCAGAACCTATTTT--------GCCCATTTGGAGGTAT--TGATTTTGGATAC-TTTTTT-----TAATATCAAGTCCAAAAAATCTGGGG---TTTTACAAATAATCAC-AAATGACAACAAAT-AA-AAAAAGTCCAAAGATATCTTATTTATA-AGATCTATACTCTCAATATATTTTT-ATCACATAAAAT--G---------TATGTAAGCAAATGTAATGCAATGTGCGTTCATGCATATAGATTCAC----AAAAGTCTAA-ATTGAACAAGTGTGTGGCACAAGTCTTAAAATCAATTCTTTGAGGCTGAAATTCAAAATATT---T---AAAAATTTGACTAAGCATTTACCAACGTCTATCTGATAACAAATTGTGACAATTTGCTAATTATTAGTCGAACATTAGATTATTGATGT-------TATCAAAGG------CATACAAGCACAGCAATAGTTCATATAGTCATATTTAGTATCTTTCTTAAATGAATTATGATGATAAAATCCAAATG---------------------TTCAATTGAATATGCTTAATGTTTAATTTTTTATT-CCAATTTCTTAATTCTAAATTATT-GTTCAAA-ATT---C---AT---GCCAAATGCCCGATTCTAAA-TACTTGATTATCA-T-TGTATATAATTTGTATACTGTTTTACTC-TTAATTTCTATTTC-TAGTTCTTAATGATA----C---ATTCTTCATGCC-AAGTGAATGGGTTAATTC--TTTATG
gi|4 : GGTCCGTAGCTAGACCTTAA-AA-A--AGGGAGGCAGATTNN--N--N--NNN---NN-NNNNNNNN---------------N--NN----N----NNNNNNNN--NNN-NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCCCATTTGGAGGTAT--TGATTTTGGATAC-TTTTTT-----TA-TACCAAGACCAAAAA--------------------TAATTACCGAATGACAACAAAT-CACAAAATTCACAAATACATCTAATTCATTCAGATCTATACTCTCACCATACTTTT------------------TT-GATACATG----CAAATGTCATGCAATGCGCATTGATGCATATAGACTCAC----ATCAATCTAA-ATTGTACAAGTGTGTAACGTAAGTCTTTAAATCAAATATTTGAGAC--AAA---AAAACATTTGGT---AAGTATTACACTAAACATTCACCAACGTCTATCTGATAATAAATTGTGAGGATTTGCTATTTATAAGTCGAACATTATACTG-TAATAT-------TATCAAA
gi|5 : CCTTAA-AA-A-CAGGGAGTCCGATTNN--N--N--NNN---NN-NNNNNNNN---------------N--NN----N----NNNNNNNN--NNN-NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN---GTCCATTTGGAGGTTT--TGATTTTGGATAT-TTGTTT-----TA-TATCAAGACAAAAAAATCTGGGGATATTTTACAAATAATCACCAAATTACAACAAATCAA-AAAATTCACAAATACATCATATTTATTTAAATCTATGCTCTCAACATATTTTT-TGTAGAT----------TT-GATACATG----CAAATGTCACGCAATGCGCATTCATGCATTTAGATTCACTTCAATCACTTCAACATTTTATAAGTAT-TAGACTAAG
gi|5 : AACATT---TTATAAGTATTAGACTAAGCATTCACAAAGCTCTATCTGATAACAAATTGTGAGGATTTGCTGTTTGTTAGTCCAACATTATATC-TTGATGT-------TACCAAAGG------Ccattcacaaagctctatctgataacaaattgtgaggatttgctgtttgttagtccaacattatatcttgatgttaccaaaggc
gi|6 : ccttaaaaacagggagtccgattnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngtccatttggaggttttgattttggatatttgttttatatcaagacaaaaaaatctggggatattttacaaataatcaccaaattacaacaaatcaaaaaattcacaaatacatcatatttatttaaatctatgctctcaacatattttttgtagatttgatacatgcaaatgtcacgcaatgcgcattcatgcatttagattcacttcaatcacttcGGCCCGTAGATAGACCTTAA-AA-AACAAGGTGACCGATTCT--A--G--GGGGTCTTATGGGCATG---------------TTCGC----C----CAGAA-AATGAAT-TGGGCGAAGATTCAATTTCTTGCGTTTTCTTACATTTCAGAACCTATTTT--------GCCCATTTTAA--TATTCTGTTTTT-------TTTTCTATAAATAATAACAA-ATCAAATAAT
gi|6 : AAAGAAAATATGAGTT-GATACATGTATAAAAGTGTCATGCAATGTGCGTTCATGCATATAGATTCAC----ATAAGTCTAA-ATTGTACACGTGTGTAACATAAGTCTTAAAA-CAAtcataaagaaaatatgagttgatacatgtataaaagtgtcatgcaatgtgcgttcatgcatatagattcacataagtctaaattgtacacgtgtgtaacataagtcttaaaacaagattttgtctagcaaaaggttccttctagcgcat
gi|7 : ggcccgtagatagaccttaaaaaacaaggtgaccgattctagggggtcttatgggcatgttcgcccagaaaatgaattgggcgaagattcaatttcttgcgttttcttacatttcagaacctattttgcccattttaatattctgtttttttttctataaataataacaaatcaaataattcatTAGTGGCAGTTGTTAATGTAGTTGTTGTGATGGTGGTTGTAGTAGTGACAGTGGTAGgattttgtctagcaaaaggttccttctagcgcat
gi|8 : TCAGTTTTTTTAGACTTAAATTCAAAACATT---T---AAGTATTAGACTAAGCCCGCCCCAACAACTATCTGATAACAAATTCTGACGATTTGCTAATTATTAGTCAAACATTAGATTAATGATGTTACAATGTATCAAAGGCAGGCACATACACATACAGTAAAAGTTCATATAGTCATATTTAGTATATTTCCCAAATGTAATATGATGTTAAAATGTAAATG---------------------TTCAA---------------------TTnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnng
gi|9 : AATG---------------------TTTAA---------------------TTCATTATT-TCTATTTCTTCATTA-AAATGATACGTTCTAA-ATT---G---ATAATGGCATATGCCTGGTTCTAAG-TGTTTTATTATCA-CCTGTACATACTTTGCATAGTGTTTTAATC-TT------CATTTCTTAGTGCTAAATGATA----A---ATTCTTCATGTCAAGATTAGTTCTTTAATTCTATTTACACTTTTTTAAgaatacgctttaatacgttga
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|14 ): AATTATACATTATTTCTGATAGTTACATGCACATCATTATCTGGTGACGTTAAAGC
Unaligned ( gi|15 ): TTATCAGAAATAAATTAAATAACATAATTTGTGTTTGTCCTATAAAAGCATAAAC
Unaligned ( gi|16 ): TACATGGCAACAATTCATATTTATGTGATTCAGTT
Alignments
lowQualScore : 66666666666666666666666666666 2222222 44444444 11 11111111 1111 1 1 333333333333333333 3333 1111 1111111 2222222 222222 77777777777777777777777777777777777777777777777 11 1 111111111111 22222222 1 11 1 1 33333333333 333333 2222
lowQualScore : 5 5 5 77777 66 66 33333333333333333333333333333 3333333 5 1 1 55555555 99 11 88888888 66 4444 5 8 8 1 1 6 1 0 666666666666666666 6 8888 6 1 0 1 4444 6 1 0 0 4444444 55 1111111 333333 55555555555555555555555555555555555555555555555 77 8 1 0 22 3 999999999999 1 6 1 666 1 0 1 8 44 0 66666666 0 33 2 0 3 00000000000 1 000000 1 3333 1 22 1
lowQualScore : . . . ..... .. .. ............................. ....... . . . ........ .. .. ........ .. .... . . . . . . . . .................. . .... . . . . .... . . . . ....... .. ....... ...... ............................................... .. . . . .. . ............ . . . ... . . . . .. . ........ . .. . . . ........... . ...... . .... . .. .
lowQualScore : 7 7 7 22222 99 99 55555555555555555555555555555 0000000 7 0 0 00000000 22 88 00000000 22 6666 0 0 0 4 0 0 0 8 555555555555555555 7 5555 7 0 7 0 2222 7 0 8 8 3333333 22 7777777 000000 33333333333333333333333333333333333333333333333 88 0 4 8 88 3 333333333333 0 7 0 888 0 8 0 0 66 8 00000000 6 88 0 0 3 33333333333 0 000000 0 5555 0 00 0
consensus : GGCCCGTAGCTAGACCTTAA-AA-A-CAGGGAGGCCGATTCT--A--G--GGG--TTTGGGGGCG---------------TGT----C----CAGAATAA--AAT-TGGGCGANGATGCCATTTCTTGCNTTTTCCTACATTTCAGAACCTATTTT--------GCCCATTTGGAGGTAT--TGATTTTGGATAC-TTTTTT-----TAATATCAAGACCAAAAAATCTGGGG---TTTTACAAATAATCACCAAATGACAACAAAT-AA-AAAACGCACAAAGATATCTNATTTATT-AGATCTATACTCTCAACATATTTTT-AGCAAATAAAAT--GA-TT-GATACATGTA--CAAA-TGTNATGCAATGCGCGTTCATGCATATAGATTCACANAAATC----TAA-ATTGNACAAGTGTGTAGCATAAGTCTTAAAATCAATTCTTTGAGGCTGAAATTCAAAACATT---T---AAGTATTAGACTAAGCATTCACCAACGTCTATCTGATAACAAATTGTGACGATTTGCTAATTATTAGTCGAACATTAGATTATTGATGT-------TATCAAAGG------CATACAAGCACAGCAATAGTTCATATAGTCATATTTAGTATCTTTCTTAAATGTATTATGATGATAAAATCCAAATG---------------------TTCAA---------------------TTCTTTATT-CCAATTTCTTAATTCTAAATGATTCGTTCAAA-ATT---C---AT---GCCAAATGCCTGATTCTAAA-TACTTGATTATCA-T-TGTATATANTTTGTATACTGTTTTATTC-TTANTTTCTATTTCTTAGTTCTAAATGATA----C---ATTCTTCATGCCAAAATGAATGGGTTAATTC--TTTACG-TCT-TTTAACGGTAGTGGTAATGGTAGTGGTAGCTGTGATTGTGATATTGTTTATGATGGTGGAAGTAGTGGTGATAGTGTTTGTGATAANGATAATGGTAATGGTAATGTTATCGGTAGGTGTAGTNGTAGTGACAGTGTCATTGGTAGTGGCAGTTAATATTGTAGTTGTTGTGATGGTGGTTGTAGTAGTGACAGTGGTAGTGGTNGTNNTAATGNTAATGCTAATATAATTGTAA
Reference ( family-2614 ) : GGCCCGTAGCTAGACCTTAA-AA-A-CAGGGAGGCCGATTCT--A--G--GGG--TTTGGGGGNG---------------TGT----C----CAGAATAA--AAT-TGGGCGANGATGCCATTTCTTGCNTTTTCCTACATTTCAGAACCTATTTT--------GCCCATTTGGAGGTAT--TGATTTTGGATAC-TTTTTT-----TAATATCAAGACCAAAAAATCTGGGG---TTTTACAAATAATCACCAAATGACAACAAAT-AA-AAAACGCACAAAGATATCTNATTTATT-AGATCTATACTCTCAACATATTTTT-AGCAAATAAAAT--GA-TT-GATACATGTA-GCAAA-TGTNATGCAATGCGCGTTCATGCATATAGATTCACANAAATC----TAA-ATTGNACAAGTGTGTAGCATAAGTCTTAAAATCAATTCTTTGAGGCTGAAATTCAAAACATT---T---AAGTATTAGACTAAGCATTCACCAACGTCTATCTGATAACAAATTGTGACGATTTGCTAATTATTAGTCGAACATTAGATTATTGATGT-------TATCAAAGG------CATACAAGCACAGCAATAGTTCATATAGTCATATTTAGTATCTTTCTTAAATGTATTATGATGATAAAATCCAAATG---------------------TTCAA---------------------TTCTTTATT-CCAATTTCTTAATTCTAAATGATTCGTTCAAA-ATT---C---AT---GCCAAATGCCTGATTCTAAA-TACTTGATTATCA-T-TGTATATANTTTGTATACTGTTTTATTC-TTANTTTCTATTTCTTAGTTCTAAATGATA----C---ATTCTTCATGCCAAAATGAATGGGTTAATTC--TTTACG-TCT-TTTAACGGTAGTGGTAATGGTAGTGGTAGCTGTGATTGTGATATTGTTTATGATGGTGGAAGTAGTGGTGATAGTGTTTGTGATAANGATAATGGTAATGGTAATGTTATCGGTAGGTGTAGTNGTAGTGACAGTGTCATTGGTAGTGGCAGTTAATATTGTAGTTGTTGTGATGGTGGTTGTAGTAGTGACAGTGGTAGTGGTNGTNNTAATGNTAATGCTAATATAATTGTAA
gi|1 : T--A--G--GGG--TTTGGGAGTGGTCTCGGGGCATGCTCGC----C----CAGAA-AA--AATATGGGCGATGATGCCATTTCTTGCTTTTTCCTACACTTCAAAACCTATTTT--------GCCCATTTGGAGGTTT--TGATTTTGGATA-----------------AT------------ATCTGAGG---TTTTACAAATAATCACAAAATGACAACAAAT-AA-AAAA-GCACACAGATATCTGATTTATT-AGATCTATACTCTCAACATATTTTTTAGCAAATAAAGT--TA-TTTGATACATG----CAAA-TGTAATGCAACGTGCGTTCATTCATAACGATTCACAAAAATC----TAA-ATTGAACAAGTGTGTAGCATAAAACCTAAAATCAATTCTTTAAGGCTGAAATTAAAAACATT---T---ATGTATTAGACTTAGCATTCACCAACGTCTTGCTGATAACAAATTGTAGCAATTTACTAATAATAAGTCGAACATAAGATTATTAATGT-------TATCAAAGG------CATACAAGCACAGCAATAGATCATATAGTCATATTTAGTATCTTTCTTAAATGTATTATGATGATAAAATCCAAATGTTCAATTGAATATGGTTAACGTTTAA---------------------TT-TTTATT-CAAATTTCTTAATTCTAAATGACTTATTTAAACATT---C---AT---GCTAAAT-CCTGATACTAGA-TACTTGATTATCA-T-TGTATATAGTTTGTATACTGTTTTATTT-TTAATTTCTATTTTTCAGTTCTAAATGATA----C---ATTCTTCATGCC-AAATGAATGGGTTAATTC--TTTATG-TCTGTTTAACGGTAGTGGTAATGGTAGTGGTAACTGTGATTGTGATATTGTTTATGATGGTGGAAGTAATGGTGATAGTGTTTGTGATAAAGATAATGGTAATGG------TATTGGTAGGTGTAGTTGTAGTGACAGTGTCATTGGTAGTGGCAGTTAATATTGTAGTTGTTGTGATATTGGTTTTAGTCGTGACAGTGGTTGTGATAATTTTAATGATAATGCTAATATAATTGTAA
gi|10 : GTTCAAA-ATTGTTC----T---GTTGAATGCATAATTCTAAAGTA--TAA--AT-G-T-TGAATATATTT-----AATGTTTAATTCATTATTTCCTATTTCTTAATTCTAAATGATAAGTTCAAAATTCTTAATACCAAAnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngcacg
gi|10 : ttgaaagccagcggAATG---------------------TTTAA---------------------TTCATTATTTCCTATTTCTTAATTCTAAATGATAAGTTCAAA-ATT---CTTAAT---ACCAAATACCTAGTT--------CTTGATTACCATT-TGTATAtacctagttcttgattaccatttgtataga
gi|11 : ttgaaagccagcgggttcaaaattgttctgttgaatgcataattctaaagtataaatgttgaatatatttCCGTAGCAAGACTTTAATAA-A-CAGGGAGGCCGATTCT--ATGG--GGG--TTTGGGGACA---------------TGT----CTTCACAGAGTTT--CTT-TGGGAGAGGATGACATTTCATGCCTTTTCCTGCTTTTCAAAGCCTATTTTCAA-----GCCCGTCTga
gi|12 : tGCCCGTAGTTAGACATTAA-AC-A-CAGGGAGACCGATTCT--A--GGAGGG--TCTGA---------------------------------AGAAT------T-TGGGCGAGGATGCTATTTTCTGCTTTTTTCT
gi|13 : GACCCGTAGCTAGAGCTTAA-AAAA-CAGGGAGGCCTATTCTAAA--G--GGG--TGTGGGGGA----------------TGTTCCCC----CAGAAg
gi|2 : GGCCCGTAGCTAGACCTCAA-AA-A-CAGGGAGGCCGATTCT--A--G--GGG--TTTGGGAGGG---------------GGT----C----CAGAATAA--AAT-TAGGCGATGATACCATTTCTTACGTTTTCCTACATTTCAGAAGCTATTTT--------GCCCATTTGGAGGTAT--TGATTTTGGATACGTTTTTT-----TAATATCAAGTTCAAAAAATCTGGGG---GTTTACAAATAATCACCAAATGACAACAAAT-AA-AAAACGCACAAAGATATCTCATTTATT-AGATCTATACTCTCATTTT-TTTTT-AGCAAATAAAAT--GAGTT-GATATATGTATGCAAA-TGTAATGCAATGTTCGTTCATGCATATAGATTCACAAAAATC----TAA-ATTGAACAAGTGTGTAGCATAAGTCTTAAGATCAATTCTTTGAGGCTGAAATTCACAACATT---T---AAGAATTAGACTAAGCATTCACCAACGTCTATCTGATAACAAATTGTGACAATTTGCTAATTATTAGTTGAACATTAGATTATTGATGT-------TATCAAAGG------CATACAAGCACAGCAATAGTTCATATAGTCATATTAAGTATCTTTCTTAAATGTATCATGATGATAAAATCCAAATG---------------------TTCAA---------------------TTTTTTATT-CCAATTTCTTAATTCTAAATGATTTTTTCAAACATT---C---AT---GCCAAATGTCTGATTCTAGA-TACTTGATTATCA-T-TGTATATAATTTGTTTACTGTTTTATTC-TTACTTTGTATTTCTTAGTTCTAAATGATT----C---ATTCTTCATGCCAAAATGAATGGGTTAATTC--TTTATG-TCT-TTT-----------TAATAGTAGTGGTAGTTATGATTGTGATATTGTTTATGATGGTGGAAGTAGTGGTGATAGTGTTTGTGATAATGATAATGATAATGGTAATGTTATCGGTAGGTGTAGTGGTAGTGACAATGTCA-------TGGCAGTTAATATTGTAGTTGTTGTGATGGTGGTTGTAATAGTGACAATGGCAGTGGTTGTGGTAATGCTAATGCTAATATAATTATAA
gi|3 : CTTCATTTCAGAACCTATTTT--------GCCCATTTGGAGGTAT--TGATTTTGGATAC-TTTTTT-----TAATATCAAGTCCAAAAAATCTGGGG---TTTTACAAATAATCAC-AAATGACAACAAAT-AA-AAAAAGTCCAAAGATATCTTATTTATA-AGATCTATACTCTCAATATATTTTT-ATCACATAAAAT--G---------TATGTAAGCAAA-TGTAATGCAATGTGCGTTCATGCATATAGATTCACAAAAGTC----TAA-ATTGAACAAGTGTGTGGCACAAGTCTTAAAATCAATTCTTTGAGGCTGAAATTCAAAATATT---T---AAAAATTTGACTAAGCATTTACCAACGTCTATCTGATAACAAATTGTGACAATTTGCTAATTATTAGTCGAACATTAGATTATTGATGT-------TATCAAAGG------CATACAAGCACAGCAATAGTTCATATAGTCATATTTAGTATCTTTCTTAAATGAATTATGATGATAAAATCCAAATG---------------------TTCAATTGAATATGCTTAATGTTTAATTTTTTATT-CCAATTTCTTAATTCTAAATTATT-GTTCAAA-ATT---C---AT---GCCAAATGCCCGATTCTAAA-TACTTGATTATCA-T-TGTATATAATTTGTATACTGTTTTACTC-TTAATTTCTATTTC-TAGTTCTTAATGATA----C---ATTCTTCATGCC-AAGTGAATGGGTTAATTC--TTTATG-
gi|4 : GGTCCGTAGCTAGACCTTAA-AA-A--AGGGAGGCAGATTNN--N--N--NNN--NNNNNNNNNN---------------NNN----N----NNNNNNNN--NNN-NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCCCATTTGGAGGTAT--TGATTTTGGATAC-TTTTTT-----TA-TACCAAGACCAAAAA--------------------TAATTACCGAATGACAACAAAT-CACAAAATTCACAAATACATCTAATTCATTCAGATCTATACTCTCACCATACTTTT------------------TT-GATACATG----CAAA-TGTCATGCAATGCGCATTGATGCATATAGACTCACATCAATC----TAA-ATTGTACAAGTGTGTAACGTAAGTCTTTAAATCAAATATTTGAGAC--AAA---AAAACATTTGGT---AAGTATTACACTAAACATTCACCAACGTCTATCTGATAATAAATTGTGAGGATTTGCTATTTATAAGTCGAACATTATACTG-TAATAT-------TATCAAA
gi|5 : CCTTAA-AA-A-CAGGGAGTCCGATTNN--N--N--NNN--NNNNNNNNNN---------------NNN----N----NNNNNNNN--NNN-NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN---GTCCATTTGGAGGTTT--TGATTTTGGATAT-TTGTTT-----TA-TATCAAGACAAAAAAATCTGGGGATATTTTACAAATAATCACCAAATTACAACAAATCAA-AAAATTCACAAATACATCATATTTATTTAAATCTATGCTCTCAACATATTTTT-TGTAGAT----------TT-GATACATG----CAAA-TGTCACGCAATGCGCATTCATGCATTTAGATTCACTTCAATCACTTCAACATTTTATAAGTAT-TAGACTAAG
gi|5 : AACATT---TTATAAGTATTAGACTAAGCATTCACAAAGCTCTATCTGATAACAAATTGTGAGGATTTGCTGTTTGTTAGTCCAACATTATATC-TTGATGT-------TACCAAAGG------Ccattcacaaagctctatctgataacaaattgtgaggatttgctgtttgttagtccaacattatatcttgatgttaccaaaggc
gi|6 : ccttaaaaacagggagtccgattnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngtccatttggaggttttgattttggatatttgttttatatcaagacaaaaaaatctggggatattttacaaataatcaccaaattacaacaaatcaaaaaattcacaaatacatcatatttatttaaatctatgctctcaacatattttttgtagatttgatacatgcaaatgtcacgcaatgcgcattcatgcatttagattcacttcaatcacttcGGCCCGTAGATAGACCTTAA-AA-AACAAGGTGACCGATTCT--A--G--GGGGTCTTATGGGCA---------------TGTTCGCC----CAGAA-AATGAAT-TGGGCGAAGATTCAATTTCTTGCGTTTTCTTACATTTCAGAACCTATTTT--------GCCCATTTTAA--TATTCTGTTTTT-------TTTTCTATAAATAATAACAA-ATCAAATAAT
gi|6 : AAAGAAAATATGAGTT-GATACATGTA-TAAAAGTGTCATGCAATGTGCGTTCATGCATATAGATTCACATAAGTC----TAA-ATTGTACACGTGTGTAACATAAGTCTTAAAA-CAAtcataaagaaaatatgagttgatacatgtataaaagtgtcatgcaatgtgcgttcatgcatatagattcacataagtctaaattgtacacgtgtgtaacataagtcttaaaacaagattttgtctagcaaaaggttccttctagcgcat
gi|7 : ggcccgtagatagaccttaaaaaacaaggtgaccgattctagggggtcttatgggcatgttcgcccagaaaatgaattgggcgaagattcaatttcttgcgttttcttacatttcagaacctattttgcccattttaatattctgtttttttttctataaataataacaaatcaaataattcatTAGTGGCAGTTGTTAATGTAGTTGTTGTGATGGTGGTTGTAGTAGTGACAGTGGTAGgattttgtctagcaaaaggttccttctagcgcat
gi|8 : TCAGTTTTTTTAGACTTAAATTCAAAACATT---T---AAGTATTAGACTAAGCCCGCCCCAACAACTATCTGATAACAAATTCTGACGATTTGCTAATTATTAGTCAAACATTAGATTAATGATGTTACAATGTATCAAAGGCAGGCACATACACATACAGTAAAAGTTCATATAGTCATATTTAGTATATTTCCCAAATGTAATATGATGTTAAAATGTAAATG---------------------TTCAA---------------------TTnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnng
gi|9 : AATG---------------------TTTAA---------------------TTCATTATT-TCTATTTCTTCATTA-AAATGATACGTTCTAA-ATT---G---ATAATGGCATATGCCTGGTTCTAAG-TGTTTTATTATCA-CCTGTACATACTTTGCATAGTGTTTTAATC-TT------CATTTCTTAGTGCTAAATGATA----A---ATTCTTCATGTCAAGATTAGTTCTTTAATTCTATTTACACTTT-TTTAAgaatacgctttaatacgttga
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|14 ): AATTATACATTATTTCTGATAGTTACATGCACATCATTATCTGGTGACGTTAAAGC
Unaligned ( gi|15 ): TTATCAGAAATAAATTAAATAACATAATTTGTGTTTGTCCTATAAAAGCATAAAC
Unaligned ( gi|16 ): TACATGGCAACAATTCATATTTATGTGATTCAGTT
Alignments
lowQualScore : 44444444444444 2222222 44444444 11 11111111 1111 1 333333333333333333 3333 1111 1111111 2222222 222222 77777777777777777777777777777777777777777777777 11 1 111111111111 22222222 1 11 1 1 33333333333 333333 2222
lowQualScore : 5 5 5 77777 66 66 0 11111111111111 3333333 5 1 1 55555555 99 11 88888888 66 4444 5 8 8 1 1 8 8 1 0 666666666666666666 6 6666 99 1 0 1 4444 6 1 0 0 4444444 55 1111111 333333 55555555555555555555555555555555555555555555555 77 8 1 0 22 3 999999999999 1 6 1 666 1 0 1 8 44 0 66666666 0 33 2 0 3 00000000000 1 000000 1 3333 1 22 1
lowQualScore : . . . ..... .. .. . .............. ....... . . . ........ .. .. ........ .. .... . . . . . . . . . .................. . .... .. . . . .... . . . . ....... .. ....... ...... ............................................... .. . . . .. . ............ . . . ... . . . . .. . ........ . .. . . . ........... . ...... . .... . .. .
lowQualScore : 7 7 7 22222 99 99 2 22222222222222 0000000 7 0 0 00000000 22 88 00000000 22 6666 0 0 0 4 0 0 0 0 8 555555555555555555 7 8888 22 0 7 0 2222 7 0 8 8 3333333 22 7777777 000000 33333333333333333333333333333333333333333333333 88 0 4 8 88 3 333333333333 0 7 0 888 0 8 0 0 66 8 00000000 6 88 0 0 3 33333333333 0 000000 0 5555 0 00 0
consensus : GGCCCGTAGCTAGACCTTAA-AA-A-CAGGGAGGCCGATTCT--A--GG--GG--TTTGGGGGCATGTTC-CC----CAGAATAA--AAT-TGGGCGANGATGCCATTTCTTGCNTTTTCCTACATTTCAGAACCTATTTT--------GCCCATTTGGAGGTAT--TGATTTTGGATAC-TTTTTT-----TAATATCAAGACCAAAAAATCTGGGG---TTTTACAAATAATCACCAAATGACAACAAAT-AA-AAAACGCACAAAGATATCTNATTTA-TT-AGATCTATACTCTCAACATATTTTT-AGCAAATAAAAT--GA-TT-GATACATGTA--CAAA--TGTNATGCAATGCGCGTTCATGCATATAGATTCACANAAATC----TAA-ATTGNACAAGTGTGTAGCATAAGTCTTAAAATCAATTCTTTGAGGCTGAAATTCAAAACATT---T---AAGTATTAGACTAAGCATTCACCAACGTCTATCTGATAACAAATTGTGACGATTTGCTAATTATTAGTCGAACATTAGATTATTGATGT-------TATCAAAGG------CATACAAGCACAGCAATAGTTCATATAGTCATATTTAGTATCTTTCTTAAATGTATTATGATGATAAAATCCAAATG---------------------TTCAA---------------------TTCTTTATT-CCAATTTCTTAATTCTAAATGATTCGTTCAAA-ATT---C---AT---GCCAAATGCCTGATTCTAAA-TACTTGATTATCA-T-TGTATATANTTTGTATACTGTTTTATTC-TTANTTTCTATTTCTTAGTTCTAAATGATA----C---ATTCTTCATGCCAAAATGAATGGGTTAATTC--TTTACG-TCT-TTTAACGGTAGTGGTAATGGTAGTGGTAGCTGTGATTGTGATATTGTTTATGATGGTGGAAGTAGTGGTGATAGTGTTTGTGATAANGATAATGGTAATGGTAATGTTATCGGTAGGTGTAGTNGTAGTGACAGTGTCATTGGTAGTGGCAGTTAATATTGTAGTTGTTGTGATGGTGGTTGTAGTAGTGACAGTGGTAGTGGTNGTNNTAATGNTAATGCTAATATAATTGTAA
Reference ( family-2614 ) : GGCCCGTAGCTAGACCTTAA-AA-A-CAGGGAGGCCGATTCT--A--GG--GG--TTTGGGGGCGTGT----C----CAGAATAA--AAT-TGGGCGANGATGCCATTTCTTGCNTTTTCCTACATTTCAGAACCTATTTT--------GCCCATTTGGAGGTAT--TGATTTTGGATAC-TTTTTT-----TAATATCAAGACCAAAAAATCTGGGG---TTTTACAAATAATCACCAAATGACAACAAAT-AA-AAAACGCACAAAGATATCTNATTTA-TT-AGATCTATACTCTCAACATATTTTT-AGCAAATAAAAT--GA-TT-GATACATGTA--CAAA--TGTNATGCAATGCGCGTTCATGCATATAGATTCACANAAATC----TAA-ATTGNACAAGTGTGTAGCATAAGTCTTAAAATCAATTCTTTGAGGCTGAAATTCAAAACATT---T---AAGTATTAGACTAAGCATTCACCAACGTCTATCTGATAACAAATTGTGACGATTTGCTAATTATTAGTCGAACATTAGATTATTGATGT-------TATCAAAGG------CATACAAGCACAGCAATAGTTCATATAGTCATATTTAGTATCTTTCTTAAATGTATTATGATGATAAAATCCAAATG---------------------TTCAA---------------------TTCTTTATT-CCAATTTCTTAATTCTAAATGATTCGTTCAAA-ATT---C---AT---GCCAAATGCCTGATTCTAAA-TACTTGATTATCA-T-TGTATATANTTTGTATACTGTTTTATTC-TTANTTTCTATTTCTTAGTTCTAAATGATA----C---ATTCTTCATGCCAAAATGAATGGGTTAATTC--TTTACG-TCT-TTTAACGGTAGTGGTAATGGTAGTGGTAGCTGTGATTGTGATATTGTTTATGATGGTGGAAGTAGTGGTGATAGTGTTTGTGATAANGATAATGGTAATGGTAATGTTATCGGTAGGTGTAGTNGTAGTGACAGTGTCATTGGTAGTGGCAGTTAATATTGTAGTTGTTGTGATGGTGGTTGTAGTAGTGACAGTGGTAGTGGTNGTNNTAATGNTAATGCTAATATAATTGTAA
gi|1 : --A--GT--GG--TCTCGGGGCATGCTCGCC----CAGAA-AA--AATATGGGCGATGATGCCATTTCTTGCTTTTTCCTACACTTCAAAACCTATTTT--------GCCCATTTGGAGGTTT--TGATTTTGGATA-----------------AT------------ATCTGAGG---TTTTACAAATAATCACAAAATGACAACAAAT-AA-AAAA-GCACACAGATATCTGATTTA-TT-AGATCTATACTCTCAACATATTTTTTAGCAAATAAAGT--TA-TTTGATACATG----CAAA--TGTAATGCAACGTGCGTTCATTCATAACGATTCACAAAAATC----TAA-ATTGAACAAGTGTGTAGCATAAAACCTAAAATCAATTCTTTAAGGCTGAAATTAAAAACATT---T---ATGTATTAGACTTAGCATTCACCAACGTCTTGCTGATAACAAATTGTAGCAATTTACTAATAATAAGTCGAACATAAGATTATTAATGT-------TATCAAAGG------CATACAAGCACAGCAATAGATCATATAGTCATATTTAGTATCTTTCTTAAATGTATTATGATGATAAAATCCAAATGTTCAATTGAATATGGTTAACGTTTAA---------------------TT-TTTATT-CAAATTTCTTAATTCTAAATGACTTATTTAAACATT---C---AT---GCTAAAT-CCTGATACTAGA-TACTTGATTATCA-T-TGTATATAGTTTGTATACTGTTTTATTT-TTAATTTCTATTTTTCAGTTCTAAATGATA----C---ATTCTTCATGCC-AAATGAATGGGTTAATTC--TTTATG-TCTGTTTAACGGTAGTGGTAATGGTAGTGGTAACTGTGATTGTGATATTGTTTATGATGGTGGAAGTAATGGTGATAGTGTTTGTGATAAAGATAATGGTAATGG------TATTGGTAGGTGTAGTTGTAGTGACAGTGTCATTGGTAGTGGCAGTTAATATTGTAGTTGTTGTGATATTGGTTTTAGTCGTGACAGTGGTTGTGATAATTTTAATGATAATGCTAATATAATTGTAA
gi|10 : taggggtttgggGTTCAAA-ATTGTTC----T---GTTGAATGCATAATTCTAAAGTA--TAA--AT-G-T-TGAATATATTT-----AATGTTTAATTCATTATTTCCTATTTCTTAATTCTAAATGATAAGTTCAAAATTCTTAATACCAAAnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngcacg
gi|10 : ttgaaagccagcggAATG---------------------TTTAA---------------------TTCATTATTTCCTATTTCTTAATTCTAAATGATAAGTTCAAA-ATT---CTTAAT---ACCAAATACCTAGTT--------CTTGATTACCATT-TGTATAtacctagttcttgattaccatttgtataga
gi|11 : ttgaaagccagcgggttcaaaattgttctgttgaatgcataattctaaagtataaatgttgaatatatttCCGTAGCAAGACTTTAATAA-A-CAGGGAGGCCGATTCT--ATGGG--GG--TTTGGGGACATGT----CTTCACAGAGTTT--CTT-TGGGAGAGGATGACATTTCATGCCTTTTCCTGCTTTTCAAAGCCTATTTTCAA-----GCCCGTCTga
gi|12 : tGCCCGTAGTTAGACATTAA-AC-A-CAGGGAGACCGATTCT--A--GGAGGG--TCTGA------------------AGAAT------T-TGGGCGAGGATGCTATTTTCTGCTTTTTTCT
gi|13 : GACCCGTAGCTAGAGCTTAA-AAAA-CAGGGAGGCCTATTCTAAA--GG--GG--TGTGGGGG-ATGTTCCCC----CAGAAg
gi|2 : GGCCCGTAGCTAGACCTCAA-AA-A-CAGGGAGGCCGATTCT--A--GG--GG--TTTGGGAGGGGGT----C----CAGAATAA--AAT-TAGGCGATGATACCATTTCTTACGTTTTCCTACATTTCAGAAGCTATTTT--------GCCCATTTGGAGGTAT--TGATTTTGGATACGTTTTTT-----TAATATCAAGTTCAAAAAATCTGGGG---GTTTACAAATAATCACCAAATGACAACAAAT-AA-AAAACGCACAAAGATATCTCATTTA-TT-AGATCTATACTCTCATTTT-TTTTT-AGCAAATAAAAT--GAGTT-GATATATGTATGCAAA--TGTAATGCAATGTTCGTTCATGCATATAGATTCACAAAAATC----TAA-ATTGAACAAGTGTGTAGCATAAGTCTTAAGATCAATTCTTTGAGGCTGAAATTCACAACATT---T---AAGAATTAGACTAAGCATTCACCAACGTCTATCTGATAACAAATTGTGACAATTTGCTAATTATTAGTTGAACATTAGATTATTGATGT-------TATCAAAGG------CATACAAGCACAGCAATAGTTCATATAGTCATATTAAGTATCTTTCTTAAATGTATCATGATGATAAAATCCAAATG---------------------TTCAA---------------------TTTTTTATT-CCAATTTCTTAATTCTAAATGATTTTTTCAAACATT---C---AT---GCCAAATGTCTGATTCTAGA-TACTTGATTATCA-T-TGTATATAATTTGTTTACTGTTTTATTC-TTACTTTGTATTTCTTAGTTCTAAATGATT----C---ATTCTTCATGCCAAAATGAATGGGTTAATTC--TTTATG-TCT-TTT-----------TAATAGTAGTGGTAGTTATGATTGTGATATTGTTTATGATGGTGGAAGTAGTGGTGATAGTGTTTGTGATAATGATAATGATAATGGTAATGTTATCGGTAGGTGTAGTGGTAGTGACAATGTCA-------TGGCAGTTAATATTGTAGTTGTTGTGATGGTGGTTGTAATAGTGACAATGGCAGTGGTTGTGGTAATGCTAATGCTAATATAATTATAA
gi|3 : CTTCATTTCAGAACCTATTTT--------GCCCATTTGGAGGTAT--TGATTTTGGATAC-TTTTTT-----TAATATCAAGTCCAAAAAATCTGGGG---TTTTACAAATAATCAC-AAATGACAACAAAT-AA-AAAAAGTCCAAAGATATCTTATTTA-TA-AGATCTATACTCTCAATATATTTTT-ATCACATAAAAT--G---------TATGTAAGCAAA--TGTAATGCAATGTGCGTTCATGCATATAGATTCACAAAAGTC----TAA-ATTGAACAAGTGTGTGGCACAAGTCTTAAAATCAATTCTTTGAGGCTGAAATTCAAAATATT---T---AAAAATTTGACTAAGCATTTACCAACGTCTATCTGATAACAAATTGTGACAATTTGCTAATTATTAGTCGAACATTAGATTATTGATGT-------TATCAAAGG------CATACAAGCACAGCAATAGTTCATATAGTCATATTTAGTATCTTTCTTAAATGAATTATGATGATAAAATCCAAATG---------------------TTCAATTGAATATGCTTAATGTTTAATTTTTTATT-CCAATTTCTTAATTCTAAATTATT-GTTCAAA-ATT---C---AT---GCCAAATGCCCGATTCTAAA-TACTTGATTATCA-T-TGTATATAATTTGTATACTGTTTTACTC-TTAATTTCTATTTC-TAGTTCTTAATGATA----C---ATTCTTCATGCC-AAGTGAATGGGTTAATTC--TTTATG-
gi|4 : GGTCCGTAGCTAGACCTTAA-AA-A--AGGGAGGCAGATTNN--N--NN--NN--NNNNNNNNNNNNN----N----NNNNNNNN--NNN-NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCCCATTTGGAGGTAT--TGATTTTGGATAC-TTTTTT-----TA-TACCAAGACCAAAAA--------------------TAATTACCGAATGACAACAAAT-CACAAAATTCACAAATACATCTAATTCA-TTCAGATCTATACTCTCACCATACTTTT------------------TT-GATACATG----CAAA--TGTCATGCAATGCGCATTGATGCATATAGACTCACATCAATC----TAA-ATTGTACAAGTGTGTAACGTAAGTCTTTAAATCAAATATTTGAGAC--AAA---AAAACATTTGGT---AAGTATTACACTAAACATTCACCAACGTCTATCTGATAATAAATTGTGAGGATTTGCTATTTATAAGTCGAACATTATACTG-TAATAT-------TATCAAA
gi|5 : CCTTAA-AA-A-CAGGGAGTCCGATTNN--N--NN--NN--NNNNNNNNNNNNN----N----NNNNNNNN--NNN-NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN---GTCCATTTGGAGGTTT--TGATTTTGGATAT-TTGTTT-----TA-TATCAAGACAAAAAAATCTGGGGATATTTTACAAATAATCACCAAATTACAACAAATCAA-AAAATTCACAAATACATCATATTTATTT-AAATCTATGCTCTCAACATATTTTT-TGTAGAT----------TT-GATACATG----CAAA--TGTCACGCAATGCGCATTCATGCATTTAGATTCACTTCAATCACTTCAACATTTTATAAGTAT-TAGACTAAG
gi|5 : AACATT---TTATAAGTATTAGACTAAGCATTCACAAAGCTCTATCTGATAACAAATTGTGAGGATTTGCTGTTTGTTAGTCCAACATTATATC-TTGATGT-------TACCAAAGG------Ccattcacaaagctctatctgataacaaattgtgaggatttgctgtttgttagtccaacattatatcttgatgttaccaaaggc
gi|6 : ccttaaaaacagggagtccgattnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngtccatttggaggttttgattttggatatttgttttatatcaagacaaaaaaatctggggatattttacaaataatcaccaaattacaacaaatcaaaaaattcacaaatacatcatatttatttaaatctatgctctcaacatattttttgtagatttgatacatgcaaatgtcacgcaatgcgcattcatgcatttagattcacttcaatcacttcGGCCCGTAGATAGACCTTAA-AA-AACAAGGTGACCGATTCT--A--GG--GGGTCTTATGGGCATGTTCGCC----CAGAA-AATGAAT-TGGGCGAAGATTCAATTTCTTGCGTTTTCTTACATTTCAGAACCTATTTT--------GCCCATTTTAA--TATTCTGTTTTT-------TTTTCTATAAATAATAACAA-ATCAAATAAT
gi|6 : AAAGAAAATATGAGTT-GATACATGTA--TAAAAGTGTCATGCAATGTGCGTTCATGCATATAGATTCACATAAGTC----TAA-ATTGTACACGTGTGTAACATAAGTCTTAAAA-CAAtcataaagaaaatatgagttgatacatgtataaaagtgtcatgcaatgtgcgttcatgcatatagattcacataagtctaaattgtacacgtgtgtaacataagtcttaaaacaagattttgtctagcaaaaggttccttctagcgcat
gi|7 : ggcccgtagatagaccttaaaaaacaaggtgaccgattctagggggtcttatgggcatgttcgcccagaaaatgaattgggcgaagattcaatttcttgcgttttcttacatttcagaacctattttgcccattttaatattctgtttttttttctataaataataacaaatcaaataattcatTAGTGGCAGTTGTTAATGTAGTTGTTGTGATGGTGGTTGTAGTAGTGACAGTGGTAGgattttgtctagcaaaaggttccttctagcgcat
gi|8 : TCAGTTTTTTTAGACTTAAATTCAAAACATT---T---AAGTATTAGACTAAGCCCGCCCCAACAACTATCTGATAACAAATTCTGACGATTTGCTAATTATTAGTCAAACATTAGATTAATGATGTTACAATGTATCAAAGGCAGGCACATACACATACAGTAAAAGTTCATATAGTCATATTTAGTATATTTCCCAAATGTAATATGATGTTAAAATGTAAATG---------------------TTCAA---------------------TTnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnng
gi|9 : AATG---------------------TTTAA---------------------TTCATTATT-TCTATTTCTTCATTA-AAATGATACGTTCTAA-ATT---G---ATAATGGCATATGCCTGGTTCTAAG-TGTTTTATTATCA-CCTGTACATACTTTGCATAGTGTTTTAATC-TT------CATTTCTTAGTGCTAAATGATA----A---ATTCTTCATGTCAAGATTAGTTCTTTAATTCTATTTACACTTT-TTTAAgaatacgctttaatacgttga
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|14 ): AATTATACATTATTTCTGATAGTTACATGCACATCATTATCTGGTGACGTTAAAGC
Unaligned ( gi|15 ): TTATCAGAAATAAATTAAATAACATAATTTGTGTTTGTCCTATAAAAGCATAAAC
Unaligned ( gi|16 ): TACATGGCAACAATTCATATTTATGTGATTCAGTT
Alignments
lowQualScore : 22222 2222222 33333 11 11111111 1111 1 333333333333333333 3333 1111 1111111 2222222 222222 77777777777777777777777777777777777777777777777 11 1 111111111111 22222222 1 11 1 1 33333333333 333333 2222
lowQualScore : 5 5 5 77777 66 66 0 5 33333 3333333 5 1 1 22222 99 11 88888888 66 4444 5 8 8 1 1 8 8 0 666666666666666666 6 6666 99 1 0 1 4444 6 1 0 0 4444444 55 1111111 333333 55555555555555555555555555555555555555555555555 77 8 1 0 22 3 999999999999 1 6 1 666 1 0 1 8 44 0 66666666 0 33 2 0 3 00000000000 1 000000 1 3333 1 22 1
lowQualScore : . . . ..... .. .. . . ..... ....... . . . ..... .. .. ........ .. .... . . . . . . . . .................. . .... .. . . . .... . . . . ....... .. ....... ...... ............................................... .. . . . .. . ............ . . . ... . . . . .. . ........ . .. . . . ........... . ...... . .... . .. .
lowQualScore : 7 7 7 22222 99 99 2 2 66666 0000000 7 0 0 11111 22 88 00000000 22 6666 0 0 0 4 0 0 0 8 555555555555555555 7 8888 22 0 7 0 2222 7 0 8 8 3333333 22 7777777 000000 33333333333333333333333333333333333333333333333 88 0 4 8 88 3 333333333333 0 7 0 888 0 8 0 0 66 8 00000000 6 88 0 0 3 33333333333 0 000000 0 5555 0 00 0
consensus : GGCCCGTAGCTAGACCTTAA-AA-A-CAGGGAGGCCGATTCT--A--G--GGG--TTTGGGGGCATGT-T-C-CCCAGAATAA--AAT-TGGGCGANGATGCCATTTCTTGCNTTTTCCTACATTTCAGAACCTATTTT-----GCCCATTTGGAGGTAT--TGATTTTGGATAC-TTTTTT-----TAATATCAAGACCAAAAAATCTGGGG---TTTTACAAATAATCACCAAATGACAACAAAT-AA-AAAACGCACAAAGATATCTNATTTA-TT-AGATCTATACTCTCAACATATTTTT-AGCAAATAAAAT--GA-TT-GATACATGTA--CAAA--TGTNATGCAATGCGCGTTCATGCATATAGATTCACANAAATC----TAA-ATTGNACAAGTGTGTAGCATAAGTCTTAAAATCAATTCTTTGAGGCTGAAATTCAAAACATT---T---AAGTATTAGACTAAGCATTCACCAACGTCTATCTGATAACAAATTGTGACGATTTGCTAATTATTAGTCGAACATTAGATTATTGATGT-------TATCAAAGG------CATACAAGCACAGCAATAGTTCATATAGTCATATTTAGTATCTTTCTTAAATGTATTATGATGATAAAATCCAAATG---------------------TTCAA---------------------TTCTTTATT-CCAATTTCTTAATTCTAAATGATTCGTTCAAA-ATT---C---AT---GCCAAATGCCTGATTCTAAA-TACTTGATTATCA-T-TGTATATANTTTGTATACTGTTTTATTC-TTANTTTCTATTTCTTAGTTCTAAATGATA----C---ATTCTTCATGCCAAAATGAATGGGTTAATTC--TTTACG-TCT-TTTAACGGTAGTGGTAATGGTAGTGGTAGCTGTGATTGTGATATTGTTTATGATGGTGGAAGTAGTGGTGATAGTGTTTGTGATAANGATAATGGTAATGGTAATGTTATCGGTAGGTGTAGTNGTAGTGACAGTGTCATTGGTAGTGGCAGTTAATATTGTAGTTGTTGTGATGGTGGTTGTAGTAGTGACAGTGGTAGTGGTNGTNNTAATGNTAATGCTAATATAATTGTAA
Reference ( family-2614 ) : GGCCCGTAGCTAGACCTTAA-AA-A-CAGGGAGGCCGATTCT--A--G--GGG--TTTGGGGGCATGT-T-C-CCCAGAATAA--AAT-TGGGCGANGATGCCATTTCTTGCNTTTTCCTACATTTCAGAACCTATTTT-----GCCCATTTGGAGGTAT--TGATTTTGGATAC-TTTTTT-----TAATATCAAGACCAAAAAATCTGGGG---TTTTACAAATAATCACCAAATGACAACAAAT-AA-AAAACGCACAAAGATATCTNATTTA-TT-AGATCTATACTCTCAACATATTTTT-AGCAAATAAAAT--GA-TT-GATACATGTA--CAAA--TGTNATGCAATGCGCGTTCATGCATATAGATTCACANAAATC----TAA-ATTGNACAAGTGTGTAGCATAAGTCTTAAAATCAATTCTTTGAGGCTGAAATTCAAAACATT---T---AAGTATTAGACTAAGCATTCACCAACGTCTATCTGATAACAAATTGTGACGATTTGCTAATTATTAGTCGAACATTAGATTATTGATGT-------TATCAAAGG------CATACAAGCACAGCAATAGTTCATATAGTCATATTTAGTATCTTTCTTAAATGTATTATGATGATAAAATCCAAATG---------------------TTCAA---------------------TTCTTTATT-CCAATTTCTTAATTCTAAATGATTCGTTCAAA-ATT---C---AT---GCCAAATGCCTGATTCTAAA-TACTTGATTATCA-T-TGTATATANTTTGTATACTGTTTTATTC-TTANTTTCTATTTCTTAGTTCTAAATGATA----C---ATTCTTCATGCCAAAATGAATGGGTTAATTC--TTTACG-TCT-TTTAACGGTAGTGGTAATGGTAGTGGTAGCTGTGATTGTGATATTGTTTATGATGGTGGAAGTAGTGGTGATAGTGTTTGTGATAANGATAATGGTAATGGTAATGTTATCGGTAGGTGTAGTNGTAGTGACAGTGTCATTGGTAGTGGCAGTTAATATTGTAGTTGTTGTGATGGTGGTTGTAGTAGTGACAGTGGTAGTGGTNGTNNTAATGNTAATGCTAATATAATTGTAA
gi|1 : --A--G--TGG--TCTCGGGGCATGC-T-CGCCCAGAA-AA--AATATGGGCGATGATGCCATTTCTTGCTTTTTCCTACACTTCAAAACCTATTTT-----GCCCATTTGGAGGTTT--TGATTTTGGATA-----------------AT------------ATCTGAGG---TTTTACAAATAATCACAAAATGACAACAAAT-AA-AAAA-GCACACAGATATCTGATTTA-TT-AGATCTATACTCTCAACATATTTTTTAGCAAATAAAGT--TA-TTTGATACATG----CAAA--TGTAATGCAACGTGCGTTCATTCATAACGATTCACAAAAATC----TAA-ATTGAACAAGTGTGTAGCATAAAACCTAAAATCAATTCTTTAAGGCTGAAATTAAAAACATT---T---ATGTATTAGACTTAGCATTCACCAACGTCTTGCTGATAACAAATTGTAGCAATTTACTAATAATAAGTCGAACATAAGATTATTAATGT-------TATCAAAGG------CATACAAGCACAGCAATAGATCATATAGTCATATTTAGTATCTTTCTTAAATGTATTATGATGATAAAATCCAAATGTTCAATTGAATATGGTTAACGTTTAA---------------------TT-TTTATT-CAAATTTCTTAATTCTAAATGACTTATTTAAACATT---C---AT---GCTAAAT-CCTGATACTAGA-TACTTGATTATCA-T-TGTATATAGTTTGTATACTGTTTTATTT-TTAATTTCTATTTTTCAGTTCTAAATGATA----C---ATTCTTCATGCC-AAATGAATGGGTTAATTC--TTTATG-TCTGTTTAACGGTAGTGGTAATGGTAGTGGTAACTGTGATTGTGATATTGTTTATGATGGTGGAAGTAATGGTGATAGTGTTTGTGATAAAGATAATGGTAATGG------TATTGGTAGGTGTAGTTGTAGTGACAGTGTCATTGGTAGTGGCAGTTAATATTGTAGTTGTTGTGATATTGGTTTTAGTCGTGACAGTGGTTGTGATAATTTTAATGATAATGCTAATATAATTGTAA
gi|10 : taggggtttgggGTTCAAA-ATTGTTC----T---GTTGAATGCATAATTCTAAAGTA--TAA--AT-G-T-TGAATATATTT-----AATGTTTAATTCATTATTTCCTATTTCTTAATTCTAAATGATAAGTTCAAAATTCTTAATACCAAAnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngcacg
gi|10 : ttgaaagccagcggAATG---------------------TTTAA---------------------TTCATTATTTCCTATTTCTTAATTCTAAATGATAAGTTCAAA-ATT---CTTAAT---ACCAAATACCTAGTT--------CTTGATTACCATT-TGTATAtacctagttcttgattaccatttgtataga
gi|11 : ttgaaagccagcgggttcaaaattgttctgttgaatgcataattctaaagtataaatgttgaatatatttCCGTAGCAAGACTTTAATAA-A-CAGGGAGGCCGATTCT--ATGG--GGG--TTTGGGGACATGTCT-T-CACAGAGTTT--CTT-TGGGAGAGGATGACATTTCATGCCTTTTCCTGCTTTTCAAAGCCTATTTTCAA--GCCCGTCTga
gi|12 : tGCCCGTAGTTAGACATTAA-AC-A-CAGGGAGACCGATTCT--A--GGAGGG--TCTGA----------------AGAAT------T-TGGGCGAGGATGCTATTTTCTGCTTTTTTCT
gi|13 : GACCCGTAGCTAGAGCTTAA-AAAA-CAGGGAGGCCTATTCTAAA--G--GGG--TGTGGGGG-ATGT-TCC-CCCAGAAg
gi|2 : GGCCCGTAGCTAGACCTCAA-AA-A-CAGGGAGGCCGATTCT--A--G--GGG--TTTGGGAGGGGGT------CCAGAATAA--AAT-TAGGCGATGATACCATTTCTTACGTTTTCCTACATTTCAGAAGCTATTTT-----GCCCATTTGGAGGTAT--TGATTTTGGATACGTTTTTT-----TAATATCAAGTTCAAAAAATCTGGGG---GTTTACAAATAATCACCAAATGACAACAAAT-AA-AAAACGCACAAAGATATCTCATTTA-TT-AGATCTATACTCTC-ATTTTTTTTT-AGCAAATAAAAT--GAGTT-GATATATGTATGCAAA--TGTAATGCAATGTTCGTTCATGCATATAGATTCACAAAAATC----TAA-ATTGAACAAGTGTGTAGCATAAGTCTTAAGATCAATTCTTTGAGGCTGAAATTCACAACATT---T---AAGAATTAGACTAAGCATTCACCAACGTCTATCTGATAACAAATTGTGACAATTTGCTAATTATTAGTTGAACATTAGATTATTGATGT-------TATCAAAGG------CATACAAGCACAGCAATAGTTCATATAGTCATATTAAGTATCTTTCTTAAATGTATCATGATGATAAAATCCAAATG---------------------TTCAA---------------------TTTTTTATT-CCAATTTCTTAATTCTAAATGATTTTTTCAAACATT---C---AT---GCCAAATGTCTGATTCTAGA-TACTTGATTATCA-T-TGTATATAATTTGTTTACTGTTTTATTC-TTACTTTGTATTTCTTAGTTCTAAATGATT----C---ATTCTTCATGCCAAAATGAATGGGTTAATTC--TTTATG-TCT-TTT-----------TAATAGTAGTGGTAGTTATGATTGTGATATTGTTTATGATGGTGGAAGTAGTGGTGATAGTGTTTGTGATAATGATAATGATAATGGTAATGTTATCGGTAGGTGTAGTGGTAGTGACAATGTCA-------TGGCAGTTAATATTGTAGTTGTTGTGATGGTGGTTGTAATAGTGACAATGGCAGTGGTTGTGGTAATGCTAATGCTAATATAATTATAA
gi|3 : CTTCATTTCAGAACCTATTTT-----GCCCATTTGGAGGTAT--TGATTTTGGATAC-TTTTTT-----TAATATCAAGTCCAAAAAATCTGGGG---TTTTACAAATAATCAC-AAATGACAACAAAT-AA-AAAAAGTCCAAAGATATCTTATTTA-TA-AGATCTATACTCTCAATATATTTTT-ATCACATAAAAT--G---------TATGTAAGCAAA--TGTAATGCAATGTGCGTTCATGCATATAGATTCACAAAAGTC----TAA-ATTGAACAAGTGTGTGGCACAAGTCTTAAAATCAATTCTTTGAGGCTGAAATTCAAAATATT---T---AAAAATTTGACTAAGCATTTACCAACGTCTATCTGATAACAAATTGTGACAATTTGCTAATTATTAGTCGAACATTAGATTATTGATGT-------TATCAAAGG------CATACAAGCACAGCAATAGTTCATATAGTCATATTTAGTATCTTTCTTAAATGAATTATGATGATAAAATCCAAATG---------------------TTCAATTGAATATGCTTAATGTTTAATTTTTTATT-CCAATTTCTTAATTCTAAATTATT-GTTCAAA-ATT---C---AT---GCCAAATGCCCGATTCTAAA-TACTTGATTATCA-T-TGTATATAATTTGTATACTGTTTTACTC-TTAATTTCTATTTC-TAGTTCTTAATGATA----C---ATTCTTCATGCC-AAGTGAATGGGTTAATTC--TTTATG-
gi|4 : GGTCCGTAGCTAGACCTTAA-AA-A--AGGGAGGCAGATTNN--N--N--NNN--NNNNNNNNNNNNN-N-N-NNNNNNNNNN--NNN-NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCCCATTTGGAGGTAT--TGATTTTGGATAC-TTTTTT-----TA-TACCAAGACCAAAAA--------------------TAATTACCGAATGACAACAAAT-CACAAAATTCACAAATACATCTAATTCA-TTCAGATCTATACTCTCACCATACTTTT------------------TT-GATACATG----CAAA--TGTCATGCAATGCGCATTGATGCATATAGACTCACATCAATC----TAA-ATTGTACAAGTGTGTAACGTAAGTCTTTAAATCAAATATTTGAGAC--AAA---AAAACATTTGGT---AAGTATTACACTAAACATTCACCAACGTCTATCTGATAATAAATTGTGAGGATTTGCTATTTATAAGTCGAACATTATACTG-TAATAT-------TATCAAA
gi|5 : CCTTAA-AA-A-CAGGGAGTCCGATTNN--N--N--NNN--NNNNNNNNNNNNN-N-N-NNNNNNNNNN--NNN-NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN---GTCCATTTGGAGGTTT--TGATTTTGGATAT-TTGTTT-----TA-TATCAAGACAAAAAAATCTGGGGATATTTTACAAATAATCACCAAATTACAACAAATCAA-AAAATTCACAAATACATCATATTTATTT-AAATCTATGCTCTCAACATATTTTT-TGTAGAT----------TT-GATACATG----CAAA--TGTCACGCAATGCGCATTCATGCATTTAGATTCACTTCAATCACTTCAACATTTTATAAGTAT-TAGACTAAG
gi|5 : AACATT---TTATAAGTATTAGACTAAGCATTCACAAAGCTCTATCTGATAACAAATTGTGAGGATTTGCTGTTTGTTAGTCCAACATTATATC-TTGATGT-------TACCAAAGG------Ccattcacaaagctctatctgataacaaattgtgaggatttgctgtttgttagtccaacattatatcttgatgttaccaaaggc
gi|6 : ccttaaaaacagggagtccgattnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngtccatttggaggttttgattttggatatttgttttatatcaagacaaaaaaatctggggatattttacaaataatcaccaaattacaacaaatcaaaaaattcacaaatacatcatatttatttaaatctatgctctcaacatattttttgtagatttgatacatgcaaatgtcacgcaatgcgcattcatgcatttagattcacttcaatcacttcGGCCCGTAGATAGACCTTAA-AA-AACAAGGTGACCGATTCT--A--G--GGGGTCTTATGGGCATGT-T-CGCCCAGAA-AATGAAT-TGGGCGAAGATTCAATTTCTTGCGTTTTCTTACATTTCAGAACCTATTTT-----GCCCATTTTAA--TATTCTGTTTTT-------TTTTCTATAAATAATAACAA-ATCAAATAAT
gi|6 : AAAGAAAATATGAGTT-GATACATGTA--TAAAAGTGTCATGCAATGTGCGTTCATGCATATAGATTCACATAAGTC----TAA-ATTGTACACGTGTGTAACATAAGTCTTAAAA-CAAtcataaagaaaatatgagttgatacatgtataaaagtgtcatgcaatgtgcgttcatgcatatagattcacataagtctaaattgtacacgtgtgtaacataagtcttaaaacaagattttgtctagcaaaaggttccttctagcgcat
gi|7 : ggcccgtagatagaccttaaaaaacaaggtgaccgattctagggggtcttatgggcatgttcgcccagaaaatgaattgggcgaagattcaatttcttgcgttttcttacatttcagaacctattttgcccattttaatattctgtttttttttctataaataataacaaatcaaataattcatTAGTGGCAGTTGTTAATGTAGTTGTTGTGATGGTGGTTGTAGTAGTGACAGTGGTAGgattttgtctagcaaaaggttccttctagcgcat
gi|8 : TCAGTTTTTTTAGACTTAAATTCAAAACATT---T---AAGTATTAGACTAAGCCCGCCCCAACAACTATCTGATAACAAATTCTGACGATTTGCTAATTATTAGTCAAACATTAGATTAATGATGTTACAATGTATCAAAGGCAGGCACATACACATACAGTAAAAGTTCATATAGTCATATTTAGTATATTTCCCAAATGTAATATGATGTTAAAATGTAAATG---------------------TTCAA---------------------TTnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnng
gi|9 : AATG---------------------TTTAA---------------------TTCATTATT-TCTATTTCTTCATTA-AAATGATACGTTCTAA-ATT---G---ATAATGGCATATGCCTGGTTCTAAG-TGTTTTATTATCA-CCTGTACATACTTTGCATAGTGTTTTAATC-TT------CATTTCTTAGTGCTAAATGATA----A---ATTCTTCATGTCAAGATTAGTTCTTTAATTCTATTTACACTTT-TTTAAgaatacgctttaatacgttga
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|14 ): AATTATACATTATTTCTGATAGTTACATGCACATCATTATCTGGTGACGTTAAAGC
Unaligned ( gi|15 ): TTATCAGAAATAAATTAAATAACATAATTTGTGTTTGTCCTATAAAAGCATAAAC
Unaligned ( gi|16 ): TACATGGCAACAATTCATATTTATGTGATTCAGTT
Alignments
lowQualScore : 22222 2222222 33333 11 11111111 1111 1 333333333333333333 3333 1111 1111111 2222222 222222 77777777777777777777777777777777777777777777777 11 1 111111111111 22222222 1 11 1 1 33333333333 333333 2222
lowQualScore : 5 5 5 77777 66 66 0 5 33333 3333333 5 1 1 22222 99 11 88888888 66 4444 5 8 8 1 1 8 8 0 666666666666666666 6 6666 99 1 0 1 4444 6 1 0 0 4444444 55 1111111 333333 55555555555555555555555555555555555555555555555 77 8 1 0 22 3 999999999999 1 6 1 666 1 0 1 8 44 0 66666666 0 33 2 0 3 00000000000 1 000000 1 3333 1 22 1
lowQualScore : . . . ..... .. .. . . ..... ....... . . . ..... .. .. ........ .. .... . . . . . . . . .................. . .... .. . . . .... . . . . ....... .. ....... ...... ............................................... .. . . . .. . ............ . . . ... . . . . .. . ........ . .. . . . ........... . ...... . .... . .. .
lowQualScore : 7 7 7 22222 99 99 2 2 66666 0000000 7 0 0 11111 22 88 00000000 22 6666 0 0 0 4 0 0 0 8 555555555555555555 7 8888 22 0 7 0 2222 7 0 8 8 3333333 22 7777777 000000 33333333333333333333333333333333333333333333333 88 0 4 8 88 3 333333333333 0 7 0 888 0 8 0 0 66 8 00000000 6 88 0 0 3 33333333333 0 000000 0 5555 0 00 0
consensus : GGCCCGTAGCTAGACCTTAA-AA-A-CAGGGAGGCCGATTCT--A--G--GGG--TTTGGGGGCATGT-T-C-CCCAGAATAA--AAT-TGGGCGANGATGCCATTTCTTGCNTTTTCCTACATTTCAGAACCTATTTT-----GCCCATTTGGAGGTAT--TGATTTTGGATAC-TTTTTT-----TAATATCAAGACCAAAAAATCTGGGG---TTTTACAAATAATCACCAAATGACAACAAAT-AA-AAAACGCACAAAGATATCTNATTTA-TT-AGATCTATACTCTCAACATATTTTT-AGCAAATAAAAT--GA-TT-GATACATGTA--CAAA--TGTNATGCAATGCGCGTTCATGCATATAGATTCACANAAATC----TAA-ATTGNACAAGTGTGTAGCATAAGTCTTAAAATCAATTCTTTGAGGCTGAAATTCAAAACATT---T---AAGTATTAGACTAAGCATTCACCAACGTCTATCTGATAACAAATTGTGACGATTTGCTAATTATTAGTCGAACATTAGATTATTGATGT-------TATCAAAGG------CATACAAGCACAGCAATAGTTCATATAGTCATATTTAGTATCTTTCTTAAATGTATTATGATGATAAAATCCAAATG---------------------TTCAA---------------------TTCTTTATT-CCAATTTCTTAATTCTAAATGATTCGTTCAAA-ATT---C---AT---GCCAAATGCCTGATTCTAAA-TACTTGATTATCA-T-TGTATATANTTTGTATACTGTTTTATTC-TTANTTTCTATTTCTTAGTTCTAAATGATA----C---ATTCTTCATGCCAAAATGAATGGGTTAATTC--TTTACG-TCT-TTTAACGGTAGTGGTAATGGTAGTGGTAGCTGTGATTGTGATATTGTTTATGATGGTGGAAGTAGTGGTGATAGTGTTTGTGATAANGATAATGGTAATGGTAATGTTATCGGTAGGTGTAGTNGTAGTGACAGTGTCATTGGTAGTGGCAGTTAATATTGTAGTTGTTGTGATGGTGGTTGTAGTAGTGACAGTGGTAGTGGTNGTNNTAATGNTAATGCTAATATAATTGTAA
Reference ( family-2614 ) : GGCCCGTAGCTAGACCTTAA-AA-A-CAGGGAGGCCGATTCT--A--G--GGG--TTTGGGGGCATGT-T-C-CCCAGAATAA--AAT-TGGGCGANGATGCCATTTCTTGCNTTTTCCTACATTTCAGAACCTATTTT-----GCCCATTTGGAGGTAT--TGATTTTGGATAC-TTTTTT-----TAATATCAAGACCAAAAAATCTGGGG---TTTTACAAATAATCACCAAATGACAACAAAT-AA-AAAACGCACAAAGATATCTNATTTA-TT-AGATCTATACTCTCAACATATTTTT-AGCAAATAAAAT--GA-TT-GATACATGTA--CAAA--TGTNATGCAATGCGCGTTCATGCATATAGATTCACANAAATC----TAA-ATTGNACAAGTGTGTAGCATAAGTCTTAAAATCAATTCTTTGAGGCTGAAATTCAAAACATT---T---AAGTATTAGACTAAGCATTCACCAACGTCTATCTGATAACAAATTGTGACGATTTGCTAATTATTAGTCGAACATTAGATTATTGATGT-------TATCAAAGG------CATACAAGCACAGCAATAGTTCATATAGTCATATTTAGTATCTTTCTTAAATGTATTATGATGATAAAATCCAAATG---------------------TTCAA---------------------TTCTTTATT-CCAATTTCTTAATTCTAAATGATTCGTTCAAA-ATT---C---AT---GCCAAATGCCTGATTCTAAA-TACTTGATTATCA-T-TGTATATANTTTGTATACTGTTTTATTC-TTANTTTCTATTTCTTAGTTCTAAATGATA----C---ATTCTTCATGCCAAAATGAATGGGTTAATTC--TTTACG-TCT-TTTAACGGTAGTGGTAATGGTAGTGGTAGCTGTGATTGTGATATTGTTTATGATGGTGGAAGTAGTGGTGATAGTGTTTGTGATAANGATAATGGTAATGGTAATGTTATCGGTAGGTGTAGTNGTAGTGACAGTGTCATTGGTAGTGGCAGTTAATATTGTAGTTGTTGTGATGGTGGTTGTAGTAGTGACAGTGGTAGTGGTNGTNNTAATGNTAATGCTAATATAATTGTAA
gi|1 : --A--G--TGG--TCTCGGGGCATGC-T-CGCCCAGAA-AA--AATATGGGCGATGATGCCATTTCTTGCTTTTTCCTACACTTCAAAACCTATTTT-----GCCCATTTGGAGGTTT--TGATTTTGGATA-----------------AT------------ATCTGAGG---TTTTACAAATAATCACAAAATGACAACAAAT-AA-AAAA-GCACACAGATATCTGATTTA-TT-AGATCTATACTCTCAACATATTTTTTAGCAAATAAAGT--TA-TTTGATACATG----CAAA--TGTAATGCAACGTGCGTTCATTCATAACGATTCACAAAAATC----TAA-ATTGAACAAGTGTGTAGCATAAAACCTAAAATCAATTCTTTAAGGCTGAAATTAAAAACATT---T---ATGTATTAGACTTAGCATTCACCAACGTCTTGCTGATAACAAATTGTAGCAATTTACTAATAATAAGTCGAACATAAGATTATTAATGT-------TATCAAAGG------CATACAAGCACAGCAATAGATCATATAGTCATATTTAGTATCTTTCTTAAATGTATTATGATGATAAAATCCAAATGTTCAATTGAATATGGTTAACGTTTAA---------------------TT-TTTATT-CAAATTTCTTAATTCTAAATGACTTATTTAAACATT---C---AT---GCTAAAT-CCTGATACTAGA-TACTTGATTATCA-T-TGTATATAGTTTGTATACTGTTTTATTT-TTAATTTCTATTTTTCAGTTCTAAATGATA----C---ATTCTTCATGCC-AAATGAATGGGTTAATTC--TTTATG-TCTGTTTAACGGTAGTGGTAATGGTAGTGGTAACTGTGATTGTGATATTGTTTATGATGGTGGAAGTAATGGTGATAGTGTTTGTGATAAAGATAATGGTAATGG------TATTGGTAGGTGTAGTTGTAGTGACAGTGTCATTGGTAGTGGCAGTTAATATTGTAGTTGTTGTGATATTGGTTTTAGTCGTGACAGTGGTTGTGATAATTTTAATGATAATGCTAATATAATTGTAA
gi|10 : taggggtttgggGTTCAAA-ATTGTTC----T---GTTGAATGCATAATTCTAAAGTA--TAA--AT-G-T-TGAATATATTT-----AATGTTTAATTCATTATTTCCTATTTCTTAATTCTAAATGATAAGTTCAAAATTCTTAATACCAAAnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngcacg
gi|10 : ttgaaagccagcggAATG---------------------TTTAA---------------------TTCATTATTTCCTATTTCTTAATTCTAAATGATAAGTTCAAA-ATT---CTTAAT---ACCAAATACCTAGTT--------CTTGATTACCATT-TGTATAtacctagttcttgattaccatttgtataga
gi|11 : ttgaaagccagcgggttcaaaattgttctgttgaatgcataattctaaagtataaatgttgaatatatttCCGTAGCAAGACTTTAATAA-A-CAGGGAGGCCGATTCT--ATGG--GGG--TTTGGGGACATGTCT-T-CACAGAGTTT--CTT-TGGGAGAGGATGACATTTCATGCCTTTTCCTGCTTTTCAAAGCCTATTTTCAA--GCCCGTCTga
gi|12 : tGCCCGTAGTTAGACATTAA-AC-A-CAGGGAGACCGATTCT--A--GGAGGG--TCTGA----------------AGAAT------T-TGGGCGAGGATGCTATTTTCTGCTTTTTTCT
gi|13 : GACCCGTAGCTAGAGCTTAA-AAAA-CAGGGAGGCCTATTCTAAA--G--GGG--TGTGGGGG-ATGT-TCC-CCCAGAAg
gi|2 : GGCCCGTAGCTAGACCTCAA-AA-A-CAGGGAGGCCGATTCT--A--G--GGG--TTTGGGAGGGGGT------CCAGAATAA--AAT-TAGGCGATGATACCATTTCTTACGTTTTCCTACATTTCAGAAGCTATTTT-----GCCCATTTGGAGGTAT--TGATTTTGGATACGTTTTTT-----TAATATCAAGTTCAAAAAATCTGGGG---GTTTACAAATAATCACCAAATGACAACAAAT-AA-AAAACGCACAAAGATATCTCATTTA-TT-AGATCTATACTCTC-ATTTTTTTTT-AGCAAATAAAAT--GAGTT-GATATATGTATGCAAA--TGTAATGCAATGTTCGTTCATGCATATAGATTCACAAAAATC----TAA-ATTGAACAAGTGTGTAGCATAAGTCTTAAGATCAATTCTTTGAGGCTGAAATTCACAACATT---T---AAGAATTAGACTAAGCATTCACCAACGTCTATCTGATAACAAATTGTGACAATTTGCTAATTATTAGTTGAACATTAGATTATTGATGT-------TATCAAAGG------CATACAAGCACAGCAATAGTTCATATAGTCATATTAAGTATCTTTCTTAAATGTATCATGATGATAAAATCCAAATG---------------------TTCAA---------------------TTTTTTATT-CCAATTTCTTAATTCTAAATGATTTTTTCAAACATT---C---AT---GCCAAATGTCTGATTCTAGA-TACTTGATTATCA-T-TGTATATAATTTGTTTACTGTTTTATTC-TTACTTTGTATTTCTTAGTTCTAAATGATT----C---ATTCTTCATGCCAAAATGAATGGGTTAATTC--TTTATG-TCT-TTT-----------TAATAGTAGTGGTAGTTATGATTGTGATATTGTTTATGATGGTGGAAGTAGTGGTGATAGTGTTTGTGATAATGATAATGATAATGGTAATGTTATCGGTAGGTGTAGTGGTAGTGACAATGTCA-------TGGCAGTTAATATTGTAGTTGTTGTGATGGTGGTTGTAATAGTGACAATGGCAGTGGTTGTGGTAATGCTAATGCTAATATAATTATAA
gi|3 : CTTCATTTCAGAACCTATTTT-----GCCCATTTGGAGGTAT--TGATTTTGGATAC-TTTTTT-----TAATATCAAGTCCAAAAAATCTGGGG---TTTTACAAATAATCAC-AAATGACAACAAAT-AA-AAAAAGTCCAAAGATATCTTATTTA-TA-AGATCTATACTCTCAATATATTTTT-ATCACATAAAAT--G---------TATGTAAGCAAA--TGTAATGCAATGTGCGTTCATGCATATAGATTCACAAAAGTC----TAA-ATTGAACAAGTGTGTGGCACAAGTCTTAAAATCAATTCTTTGAGGCTGAAATTCAAAATATT---T---AAAAATTTGACTAAGCATTTACCAACGTCTATCTGATAACAAATTGTGACAATTTGCTAATTATTAGTCGAACATTAGATTATTGATGT-------TATCAAAGG------CATACAAGCACAGCAATAGTTCATATAGTCATATTTAGTATCTTTCTTAAATGAATTATGATGATAAAATCCAAATG---------------------TTCAATTGAATATGCTTAATGTTTAATTTTTTATT-CCAATTTCTTAATTCTAAATTATT-GTTCAAA-ATT---C---AT---GCCAAATGCCCGATTCTAAA-TACTTGATTATCA-T-TGTATATAATTTGTATACTGTTTTACTC-TTAATTTCTATTTC-TAGTTCTTAATGATA----C---ATTCTTCATGCC-AAGTGAATGGGTTAATTC--TTTATG-
gi|4 : GGTCCGTAGCTAGACCTTAA-AA-A--AGGGAGGCAGATTNN--N--N--NNN--NNNNNNNNNNNNN-N-N-NNNNNNNNNN--NNN-NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCCCATTTGGAGGTAT--TGATTTTGGATAC-TTTTTT-----TA-TACCAAGACCAAAAA--------------------TAATTACCGAATGACAACAAAT-CACAAAATTCACAAATACATCTAATTCA-TTCAGATCTATACTCTCACCATACTTTT------------------TT-GATACATG----CAAA--TGTCATGCAATGCGCATTGATGCATATAGACTCACATCAATC----TAA-ATTGTACAAGTGTGTAACGTAAGTCTTTAAATCAAATATTTGAGAC--AAA---AAAACATTTGGT---AAGTATTACACTAAACATTCACCAACGTCTATCTGATAATAAATTGTGAGGATTTGCTATTTATAAGTCGAACATTATACTG-TAATAT-------TATCAAA
gi|5 : CCTTAA-AA-A-CAGGGAGTCCGATTNN--N--N--NNN--NNNNNNNNNNNNN-N-N-NNNNNNNNNN--NNN-NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN---GTCCATTTGGAGGTTT--TGATTTTGGATAT-TTGTTT-----TA-TATCAAGACAAAAAAATCTGGGGATATTTTACAAATAATCACCAAATTACAACAAATCAA-AAAATTCACAAATACATCATATTTATTT-AAATCTATGCTCTCAACATATTTTT-TGTAGAT----------TT-GATACATG----CAAA--TGTCACGCAATGCGCATTCATGCATTTAGATTCACTTCAATCACTTCAACATTTTATAAGTAT-TAGACTAAG
gi|5 : AACATT---TTATAAGTATTAGACTAAGCATTCACAAAGCTCTATCTGATAACAAATTGTGAGGATTTGCTGTTTGTTAGTCCAACATTATATC-TTGATGT-------TACCAAAGG------Ccattcacaaagctctatctgataacaaattgtgaggatttgctgtttgttagtccaacattatatcttgatgttaccaaaggc
gi|6 : ccttaaaaacagggagtccgattnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngtccatttggaggttttgattttggatatttgttttatatcaagacaaaaaaatctggggatattttacaaataatcaccaaattacaacaaatcaaaaaattcacaaatacatcatatttatttaaatctatgctctcaacatattttttgtagatttgatacatgcaaatgtcacgcaatgcgcattcatgcatttagattcacttcaatcacttcGGCCCGTAGATAGACCTTAA-AA-AACAAGGTGACCGATTCT--A--G--GGGGTCTTATGGGCATGT-T-CGCCCAGAA-AATGAAT-TGGGCGAAGATTCAATTTCTTGCGTTTTCTTACATTTCAGAACCTATTTT-----GCCCATTTTAA--TATTCTGTTTTT-------TTTTCTATAAATAATAACAA-ATCAAATAAT
gi|6 : AAAGAAAATATGAGTT-GATACATGTA--TAAAAGTGTCATGCAATGTGCGTTCATGCATATAGATTCACATAAGTC----TAA-ATTGTACACGTGTGTAACATAAGTCTTAAAA-CAAtcataaagaaaatatgagttgatacatgtataaaagtgtcatgcaatgtgcgttcatgcatatagattcacataagtctaaattgtacacgtgtgtaacataagtcttaaaacaagattttgtctagcaaaaggttccttctagcgcat
gi|7 : ggcccgtagatagaccttaaaaaacaaggtgaccgattctagggggtcttatgggcatgttcgcccagaaaatgaattgggcgaagattcaatttcttgcgttttcttacatttcagaacctattttgcccattttaatattctgtttttttttctataaataataacaaatcaaataattcatTAGTGGCAGTTGTTAATGTAGTTGTTGTGATGGTGGTTGTAGTAGTGACAGTGGTAGgattttgtctagcaaaaggttccttctagcgcat
gi|8 : TCAGTTTTTTTAGACTTAAATTCAAAACATT---T---AAGTATTAGACTAAGCCCGCCCCAACAACTATCTGATAACAAATTCTGACGATTTGCTAATTATTAGTCAAACATTAGATTAATGATGTTACAATGTATCAAAGGCAGGCACATACACATACAGTAAAAGTTCATATAGTCATATTTAGTATATTTCCCAAATGTAATATGATGTTAAAATGTAAATG---------------------TTCAA---------------------TTnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnng
gi|9 : AATG---------------------TTTAA---------------------TTCATTATT-TCTATTTCTTCATTA-AAATGATACGTTCTAA-ATT---G---ATAATGGCATATGCCTGGTTCTAAG-TGTTTTATTATCA-CCTGTACATACTTTGCATAGTGTTTTAATC-TT------CATTTCTTAGTGCTAAATGATA----A---ATTCTTCATGTCAAGATTAGTTCTTTAATTCTATTTACACTTT-TTTAAgaatacgctttaatacgttga
blockSeqs : . A A ATG GA GT C CTT AATGAA . G C NNNNN TC CG ATAAATAA GT ATAT C C C C C T C AGCAAATAAAATGAG . TATG AG A A ACTT C A TGGT AT TACAATG CAGGCA TTCAATTGAATATGCTTAATGTTTAA CA T T AA C CTTAAT G G C TT T T A AT AGTTCAAA A TA T C . . T TAATGT G . T GG C
blockSeqs : . . . AAA . . G TCC TTTCT . G T CAA . C TAA GT G C . . A T . . ATCACATAAAATG . TAAG . A A . . A TTAT AT . . TTTAA TT . A TT . GATAAT A . C CC A A . AC C A . T . .
blockSeqs : . . . A . . N TCG TAAAA . T G NN . C TAA GA T C . . T A . . TGTAGAT . TA . C T . . T T AA . . TTCAA TT . A AC . GTTCT G . C T A A . AA C A . C .
blockSeqs : . . . A . . N NN NNNNN . N N . . T TA GA . . . . T T . . . . . . C T . . T T G . . TTCAA CA . T T . CAT G . T T C . . . A .
blockSeqs : . . . N . . C NN NNNNN . N N . . . TA A . . . C T . . T T T . TTTAA . CAT G . . T
blockSeqs : . . . N . . . . T . A G .
blockSeqs : A . . . .
blockSeqCons : TNNNN** C* TAA***** GN CAAT************** TA** TTCAA****************************************** CN
originalCons : GGCCCGTAGCTAGACCTTAA-AA-A-CAGGGAGGCCGATTCT--A--G--GGG--TTTGGGGGCATGT-T-C-CCCAGAATAA--AAT-TGGGCGANGATGCCATTTCTTGCNTTTTCCTACATTTCAGAACCTATTTT-----GCCCATTTGGAGGTAT--TGATTTTGGATAC-TTTTTT-----TAATATCAAGACCAAAAAATCTGGGG---TTTTACAAATAATCACCAAATGACAACAAAT-AA-AAAACGCACAAAGATATCTNATTTA-TT-AGATCTATACTCTCAACATATTTTT-AGCAAATAAAAT--GA-TT-GATACATGTA--CAAA--TGTNATGCAATGCGCGTTCATGCATATAGATTCACANAAATC----TAA-ATTGNACAAGTGTGTAGCATAAGTCTTAAAATCAATTCTTTGAGGCTGAAATTCAAAACATT---T---AAGTATTAGACTAAGCATTCACCAACGTCTATCTGATAACAAATTGTGACGATTTGCTAATTATTAGTCGAACATTAGATTATTGATGT-------TATCAAAGG------CATACAAGCACAGCAATAGTTCATATAGTCATATTTAGTATCTTTCTTAAATGTATTATGATGATAAAATCCAAATG---------------------TTCAA---------------------TTCTTTATT-CCAATTTCTTAATTCTAAATGATTCGTTCAAA-ATT---C---AT---GCCAAATGCCTGATTCTAAA-TACTTGATTATCA-T-TGTATATANTTTGTATACTGTTTTATTC-TTANTTTCTATTTCTTAGTTCTAAATGATA----C---ATTCTTCATGCCAAAATGAATGGGTTAATTC--TTTACG-TCT-TTTAACGGTAGTGGTAATGGTAGTGGTAGCTGTGATTGTGATATTGTTTATGATGGTGGAAGTAGTGGTGATAGTGTTTGTGATAANGATAATGGTAATGGTAATGTTATCGGTAGGTGTAGTNGTAGTGACAGTGTCATTGGTAGTGGCAGTTAATATTGTAGTTGTTGTGATGGTGGTTGTAGTAGTGACAGTGGTAGTGGTNGTNNTAATGNTAATGCTAATATAATTGTAA
finalCons : GGCCCGTAGCTAGACCTTAA-AA-A-CAGGGAGGCCGATTCT--A--G--GGG--TTTGGGGGCATGT-T-C-CCCAGAATNNNN--T-TGGGCGANGATGCCATTTCTTGCNTTTTCCTACATTTCAGAACCTATTTT-----GCCCATTTGGAGGTAT--TGATTTTGGATAC-TTTTTTTAA-----TATCAAGNCCAAAAAATCTGGGG---TTTTACAAATAATCACCAAATGACAACAAAT-AA-AAAACGCACAAAGATATCTNATTTA-TT-AGATCTATACTCTCAACATATTTTTCAAT--------------TT-GATACATGTA--CAAA--TGTNATGCAATGCGCGTTCATGCATATAGATTCACANAAATC----TAA-ATTGNACAAGTGTGTAGCATAAGTCTTAAAATCAATTCTTTGAGGCTGAAATTCAAAACATT---T---AAGTATTAGACTAAGCATTCACCAACGTCTATCTGATAACAAATTGTGACGATTTGCTAATTATTAGTCGAACATTAGATTATTGATGT-------TATCAAAGG------CATACAAGCACAGCAATAGTTCATATAGTCATATTTAGTATCTTTCTTAAATGTATTATGATGATAAAATCCAAATGTTCAA------------------------------------------TTCNTTATT-CCAATTTCTTAATTCTAAATGATTCGTTCAAA-ATT---C---AT---GCCAAATGCCTGATTCTAAA-TACTTGATTATCA-T-TGTATATANTTTGTATACTGTTTTATTC-TTANTTTCTATTTCTTAGTTCTAAATGATA----C---ATTCTTCATGCCAAAATGAATGGGTTAATTC--TTTACG-TCT-TTTAACGGTAGTGGTAATGGTAGTGGTAGCTGTGATTGTGATATTGTTTATGATGGTGGAAGTAGTGGTGATAGTGTTTGTGATAANGATAATGGTAATGGTAATGTTATCGGTAGGTGTAGTNGTAGTGACAGTGTCATTGGTAGTGGCAGTTAATATTGTAGTTGTTGTGATGGTGGTTGTAGTAGTGACAGTGGTAGTGGTNGTNNTAATGNTAATGCTAATATAATTGTAA
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|14 ): AATTATACATTATTTCTGATAGTTACATGCACATCATTATCTGGTGACGTTAAAGC
Unaligned ( gi|15 ): TTATCAGAAATAAATTAAATAACATAATTTGTGTTTGTCCTATAAAAGCATAAAC
Unaligned ( gi|16 ): TACATGGCAACAATTCATATTTATGTGATTCAGTT
Alignments
lowQualScore : 1111111111111111111111111111111
lowQualScore : 22222 222222 33333 11 11111111 1111 1 2222222222222222222222222222222 3333 1111 1111111 2222222 222222 77777777777777777777777777777777777777777777777 11 1 111111111111 22222222 1 11 1 1 33333333333 333333 2222
lowQualScore : 5 5 5 77777 66 66 0 5 33333 222222 1 1 22222 99 11 88888888 55 4444 5 8 8 1 1 8 8 5 0000000000000000000000000000000 6666 99 1 0 1 4444 6 1 0 0 4444444 55 1111111 333333 55555555555555555555555555555555555555555555555 77 8 1 0 22 3 999999999999 1 6 1 666 1 0 1 8 44 0 66666666 0 33 2 0 3 00000000000 1 000000 1 3333 1 22 1
lowQualScore : . . . ..... .. .. . . ..... ...... . . ..... .. .. ........ .. .... . . . . . . . . ............................... .... .. . . . .... . . . . ....... .. ....... ...... ............................................... .. . . . .. . ............ . . . ... . . . . .. . ........ . .. . . . ........... . ...... . .... . .. .
lowQualScore : 7 7 7 22222 99 99 2 2 66666 666666 0 0 11111 22 88 00000000 88 6666 0 0 0 4 0 0 0 6 7777777777777777777777777777777 8888 22 0 7 0 2222 7 0 8 8 3333333 22 7777777 000000 33333333333333333333333333333333333333333333333 44 0 4 8 88 3 333333333333 0 7 0 888 0 8 0 0 66 8 00000000 6 88 0 0 3 33333333333 0 000000 0 5555 0 00 0
consensus : GGCCCGTAGCTAGACCTTAA-AA-A-CAGGGAGGCCGATTCT--A--G--GGG--TTTGGGGGCATGT-T-C-CCCAGAATANAN-TTGGGCGANGATGCCATTTCTTGCNTTTTCCTACATTTCAGAACCTATTTT-----GCCCATTTGGAGGTAT--TGATTTTGGATAC-TTTTTT-----TAATATCAAGACCAAAAAATCTGGGG---TTTTACAAATAATCACCAAATGACAACAAAT-AA-AAAACGCACAAAGATATCTNATTTA-TT-AGATCTATACTCTCAACATATTTTT--T----------A------------AT---TTGATACATGTA--CAAA--TGTNATGCAATGCGCGTTCATGCATATAGATTCACANAAATC----TAA-ATTGNACAAGTGTGTAGCATAAGTCTTAAAATCAATTCTTTGAGGCTGAAATTCAAAACATT---T---AAGTATTAGACTAAGCATTCACCAACGTCTATCTGATAACAAATTGTGACGATTTGCTAATTATTAGTCGAACATTAGATTATTGATGT-------TATCAAAGG------CATACAAGCACAGCAATAGTTCATATAGTCATATTTAGTATCTTTCTTAAATGTATTATGATGATAAAATCCAAATG---------------------TTCAA---------------------TTCTTTATT-CCAATTTCTTAATTCTAAATGATTCGTTCAAA-ATT---C---AT---GCCAAATGCCTGATTCTAAA-TACTTGATTATCA-T-TGTATATANTTTGTATACTGTTTTATTC-TTANTTTCTATTTCTTAGTTCTAAATGATA----C---ATTCTTCATGCCAAAATGAATGGGTTAATTC--TTTACG-TCT-TTTAACGGTAGTGGTAATGGTAGTGGTAGCTGTGATTGTGATATTGTTTATGATGGTGGAAGTAGTGGTGATAGTGTTTGTGATAANGATAATGGTAATGGTAATGTTATCGGTAGGTGTAGTNGTAGTGACAGTGTCATTGGTAGTGGCAGTTAATATTGTAGTTGTTGTGATGGTGGTTGTAGTAGTGACAGTGGTAGTGGTNGTNNTAATGNTAATGCTAATATAATTGTAA
Reference ( family-2614 ) : GGCCCGTAGCTAGACCTTAA-AA-A-CAGGGAGGCCGATTCT--A--G--GGG--TTTGGGGGCATGT-T-C-CCCAGAATNNNN-TTGGGCGANGATGCCATTTCTTGCNTTTTCCTACATTTCAGAACCTATTTT-----GCCCATTTGGAGGTAT--TGATTTTGGATAC-TTTTTT-----TAATATCAAGNCCAAAAAATCTGGGG---TTTTACAAATAATCACCAAATGACAACAAAT-AA-AAAACGCACAAAGATATCTNATTTA-TT-AGATCTATACTCTCAACATATTTTT--C----------A------------AT---TTGATACATGTA--CAAA--TGTNATGCAATGCGCGTTCATGCATATAGATTCACANAAATC----TAA-ATTGNACAAGTGTGTAGCATAAGTCTTAAAATCAATTCTTTGAGGCTGAAATTCAAAACATT---T---AAGTATTAGACTAAGCATTCACCAACGTCTATCTGATAACAAATTGTGACGATTTGCTAATTATTAGTCGAACATTAGATTATTGATGT-------TATCAAAGG------CATACAAGCACAGCAATAGTTCATATAGTCATATTTAGTATCTTTCTTAAATGTATTATGATGATAAAATCCAAATG---------------------TTCAA---------------------TTCNTTATT-CCAATTTCTTAATTCTAAATGATTCGTTCAAA-ATT---C---AT---GCCAAATGCCTGATTCTAAA-TACTTGATTATCA-T-TGTATATANTTTGTATACTGTTTTATTC-TTANTTTCTATTTCTTAGTTCTAAATGATA----C---ATTCTTCATGCCAAAATGAATGGGTTAATTC--TTTACG-TCT-TTTAACGGTAGTGGTAATGGTAGTGGTAGCTGTGATTGTGATATTGTTTATGATGGTGGAAGTAGTGGTGATAGTGTTTGTGATAANGATAATGGTAATGGTAATGTTATCGGTAGGTGTAGTNGTAGTGACAGTGTCATTGGTAGTGGCAGTTAATATTGTAGTTGTTGTGATGGTGGTTGTAGTAGTGACAGTGGTAGTGGTNGTNNTAATGNTAATGCTAATATAATTGTAA
gi|1 : --A--G--TGG--TCTCGGGGCATGC-T-CGCCCAGAAAAAAT-ATGGGCGATGATGCCATTTCTTGCTTTTTCCTACACTTCAAAACCTATTTT-----GCCCATTTGGAGGTTT--TGATTTTGGATA-----------------AT------------ATCTGAGG---TTTTACAAATAATCACAAAATGACAACAAAT-AA-AAAA-GCACACAGATATCTGATTTA-TT-AGATCTATACTCTCAACATATTTTT--T----------AGCAAATAAAGTTAT---TTGATACATG----CAAA--TGTAATGCAACGTGCGTTCATTCATAACGATTCACAAAAATC----TAA-ATTGAACAAGTGTGTAGCATAAAACCTAAAATCAATTCTTTAAGGCTGAAATTAAAAACATT---T---ATGTATTAGACTTAGCATTCACCAACGTCTTGCTGATAACAAATTGTAGCAATTTACTAATAATAAGTCGAACATAAGATTATTAATGT-------TATCAAAGG------CATACAAGCACAGCAATAGATCATATAGTCATATTTAGTATCTTTCTTAAATGTATTATGATGATAAAATCCAAATGTTCAATTGAATATGGTTAACGTTTAA---------------------TT-TTTATT-CAAATTTCTTAATTCTAAATGACTTATTTAAACATT---C---AT---GCTAAAT-CCTGATACTAGA-TACTTGATTATCA-T-TGTATATAGTTTGTATACTGTTTTATTT-TTAATTTCTATTTTTCAGTTCTAAATGATA----C---ATTCTTCATGCC-AAATGAATGGGTTAATTC--TTTATG-TCTGTTTAACGGTAGTGGTAATGGTAGTGGTAACTGTGATTGTGATATTGTTTATGATGGTGGAAGTAATGGTGATAGTGTTTGTGATAAAGATAATGGTAATGG------TATTGGTAGGTGTAGTTGTAGTGACAGTGTCATTGGTAGTGGCAGTTAATATTGTAGTTGTTGTGATATTGGTTTTAGTCGTGACAGTGGTTGTGATAATTTTAATGATAATGCTAATATAATTGTAA
gi|10 : taggggtttgggGTTCAAA-ATTGTTC----T---GTTGAATGCATAATTCTAAAGTA--TAA--AT-G-T-TGAATATATTT-----AATGTTTAATTCATTATTTCCTATTTCTTAATTCTAAATGATAAGTTCAAAATTCTTAATACCAAAnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngcacg
gi|10 : ttgaaagccagcggAATG---------------------TTTAA---------------------TTCATTATTTCCTATTTCTTAATTCTAAATGATAAGTTCAAA-ATT---CTTAAT---ACCAAATACCTAGTT--------CTTGATTACCATT-TGTATAtacctagttcttgattaccatttgtataga
gi|11 : ttgaaagccagcgggttcaaaattgttctgttgaatgcataattctaaagtataaatgttgaatatatttCCGTAGCAAGACTTTAATAA-A-CAGGGAGGCCGATTCT--ATGG--GGG--TTTGGGGACATGTCT-T-CACAGAGTTTCT-TTGGGAGAGGATGACATTTCATGCCTTTTCCTGCTTTTCAAAGCCTATTTTCAA--GCCCGTCTga
gi|12 : tGCCCGTAGTTAGACATTAA-AC-A-CAGGGAGACCGATTCT--A--GGAGGG--TCTGA----------------AGAAT-----TTGGGCGAGGATGCTATTTTCTGCTTTTTTCT
gi|13 : GACCCGTAGCTAGAGCTTAA-AAAA-CAGGGAGGCCTATTCTAAA--G--GGG--TGTGGGGG-ATGT-TCC-CCCAGAAg
gi|2 : GGCCCGTAGCTAGACCTCAA-AA-A-CAGGGAGGCCGATTCT--A--G--GGG--TTTGGGAGGGGGT------CCAGAATAAAA-TTAGGCGATGATACCATTTCTTACGTTTTCCTACATTTCAGAAGCTATTTT-----GCCCATTTGGAGGTAT--TGATTTTGGATACGTTTTTT-----TAATATCAAGTTCAAAAAATCTGGGG---GTTTACAAATAATCACCAAATGACAACAAAT-AA-AAAACGCACAAAGATATCTCATTTA-TT-AGATCTATACTCTCA---TTTTTTT--TTAGCAAATAAA------------ATGAGTTGATATATGTATGCAAA--TGTAATGCAATGTTCGTTCATGCATATAGATTCACAAAAATC----TAA-ATTGAACAAGTGTGTAGCATAAGTCTTAAGATCAATTCTTTGAGGCTGAAATTCACAACATT---T---AAGAATTAGACTAAGCATTCACCAACGTCTATCTGATAACAAATTGTGACAATTTGCTAATTATTAGTTGAACATTAGATTATTGATGT-------TATCAAAGG------CATACAAGCACAGCAATAGTTCATATAGTCATATTAAGTATCTTTCTTAAATGTATCATGATGATAAAATCCAAATG---------------------TTCAA---------------------TTTTTTATT-CCAATTTCTTAATTCTAAATGATTTTTTCAAACATT---C---AT---GCCAAATGTCTGATTCTAGA-TACTTGATTATCA-T-TGTATATAATTTGTTTACTGTTTTATTC-TTACTTTGTATTTCTTAGTTCTAAATGATT----C---ATTCTTCATGCCAAAATGAATGGGTTAATTC--TTTATG-TCT-TTT-----------TAATAGTAGTGGTAGTTATGATTGTGATATTGTTTATGATGGTGGAAGTAGTGGTGATAGTGTTTGTGATAATGATAATGATAATGGTAATGTTATCGGTAGGTGTAGTGGTAGTGACAATGTCA-------TGGCAGTTAATATTGTAGTTGTTGTGATGGTGGTTGTAATAGTGACAATGGCAGTGGTTGTGGTAATGCTAATGCTAATATAATTATAA
gi|3 : CTTCATTTCAGAACCTATTTT-----GCCCATTTGGAGGTAT--TGATTTTGGATAC-TTTTTT-----TAATATCAAGTCCAAAAAATCTGGGG---TTTTACAAATAATCAC-AAATGACAACAAAT-AA-AAAAAGTCCAAAGATATCTTATTTA-TA-AGATCTATACTCTCAATATATTTTTATC----------AC-----------AT---AAAATGTATGTAAGCAAA--TGTAATGCAATGTGCGTTCATGCATATAGATTCACAAAAGTC----TAA-ATTGAACAAGTGTGTGGCACAAGTCTTAAAATCAATTCTTTGAGGCTGAAATTCAAAATATT---T---AAAAATTTGACTAAGCATTTACCAACGTCTATCTGATAACAAATTGTGACAATTTGCTAATTATTAGTCGAACATTAGATTATTGATGT-------TATCAAAGG------CATACAAGCACAGCAATAGTTCATATAGTCATATTTAGTATCTTTCTTAAATGAATTATGATGATAAAATCCAAATG---------------------TTCAATTGAATATGCTTAATGTTTAATTTTTTATT-CCAATTTCTTAATTCTAAATTATT-GTTCAAA-ATT---C---AT---GCCAAATGCCCGATTCTAAA-TACTTGATTATCA-T-TGTATATAATTTGTATACTGTTTTACTC-TTAATTTCTATTTC-TAGTTCTTAATGATA----C---ATTCTTCATGCC-AAGTGAATGGGTTAATTC--TTTATG-
gi|4 : GGTCCGTAGCTAGACCTTAA-AA-A--AGGGAGGCAGATTNN--N--N--NNN--NNNNNNNNNNNNN-N-N-NNNNNNNNNNNN-NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCCCATTTGGAGGTAT--TGATTTTGGATAC-TTTTTT-----TA-TACCAAGACCAAAAA--------------------TAATTACCGAATGACAACAAAT-CACAAAATTCACAAATACATCTAATTCA-TTCAGATCTATACTCTCACCATACTTTT-------------------------------TTGATACATG----CAAA--TGTCATGCAATGCGCATTGATGCATATAGACTCACATCAATC----TAA-ATTGTACAAGTGTGTAACGTAAGTCTTTAAATCAAATATTTGAGAC--AAA---AAAACATTTGGT---AAGTATTACACTAAACATTCACCAACGTCTATCTGATAATAAATTGTGAGGATTTGCTATTTATAAGTCGAACATTATACTG-TAATAT-------TATCAAA
gi|5 : CCTTAA-AA-A-CAGGGAGTCCGATTNN--N--N--NNN--NNNNNNNNNNNNN-N-N-NNNNNNNNNNNN-NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN---GTCCATTTGGAGGTTT--TGATTTTGGATAT-TTGTTT-----TA-TATCAAGACAAAAAAATCTGGGGATATTTTACAAATAATCACCAAATTACAACAAATCAA-AAAATTCACAAATACATCATATTTATTT-AAATCTATGCTCTCAACATATTTTT--TGTA-------G------------AT---TTGATACATG----CAAA--TGTCACGCAATGCGCATTCATGCATTTAGATTCACTTCAATCACTTCAACATTTTATAAGTAT-TAGACTAAG
gi|5 : AACATT---TTATAAGTATTAGACTAAGCATTCACAAAGCTCTATCTGATAACAAATTGTGAGGATTTGCTGTTTGTTAGTCCAACATTATATC-TTGATGT-------TACCAAAGG------Ccattcacaaagctctatctgataacaaattgtgaggatttgctgtttgttagtccaacattatatcttgatgttaccaaaggc
gi|6 : ccttaaaaacagggagtccgattnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngtccatttggaggttttgattttggatatttgttttatatcaagacaaaaaaatctggggatattttacaaataatcaccaaattacaacaaatcaaaaaattcacaaatacatcatatttatttaaatctatgctctcaacatattttttgtagatttgatacatgcaaatgtcacgcaatgcgcattcatgcatttagattcacttcaatcacttcGGCCCGTAGATAGACCTTAA-AA-AACAAGGTGACCGATTCT--A--G--GGGGTCTTATGGGCATGT-T-CGCCCAGAAAATGAATTGGGCGAAGATTCAATTTCTTGCGTTTTCTTACATTTCAGAACCTATTTT-----GCCCATTTTAA--TATTCTGTTTTT-------TTTTCTATAAATAATAACAA-ATCAAATAAT
gi|6 : ---TTGATACATGTA--TAAAAGTGTCATGCAATGTGCGTTCATGCATATAGATTCACATAAGTC----TAA-ATTGTACACGTGTGTAACATAAGTCTTAAAA-CAAtcataaagaaaatatgagttgatacatgtataaaagtgtcatgcaatgtgcgttcatgcatatagattcacataagtctaaattgtacacgtgtgtaacataagtcttaaaacaagattttgtctagcaaaaggttccttctagcgcat
gi|7 : ggcccgtagatagaccttaaaaaacaaggtgaccgattctagggggtcttatgggcatgttcgcccagaaaatgaattgggcgaagattcaatttcttgcgttttcttacatttcagaacctattttgcccattttaatattctgtttttttttctataaataataacaaatcaaataattcataaagaaaatatgagTAGTGGCAGTTGTTAATGTAGTTGTTGTGATGGTGGTTGTAGTAGTGACAGTGGTAGgattttgtctagcaaaaggttccttctagcgcat
gi|8 : TCAGTTTTTTTAGACTTAAATTCAAAACATT---T---AAGTATTAGACTAAGCCCGCCCCAACAACTATCTGATAACAAATTCTGACGATTTGCTAATTATTAGTCAAACATTAGATTAATGATGTTACAATGTATCAAAGGCAGGCACATACACATACAGTAAAAGTTCATATAGTCATATTTAGTATATTTCCCAAATGTAATATGATGTTAAAATGTAAATG---------------------TTCAA---------------------TTnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnng
gi|9 : AATG---------------------TTTAA---------------------TTCATTATT-TCTATTTCTTCATTA-AAATGATACGTTCTAA-ATT---G---ATAATGGCATATGCCTGGTTCTAAG-TGTTTTATTATCA-CCTGTACATACTTTGCATAGTGTTTTAATC-TT------CATTTCTTAGTGCTAAATGATA----A---ATTCTTCATGTCAAGATTAGTTCTTTAATTCTATTTACACTTT-TTTAAgaatacgctttaatacgttga
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|14 ): AATTATACATTATTTCTGATAGTTACATGCACATCATTATCTGGTGACGTTAAAGC
Unaligned ( gi|15 ): TTATCAGAAATAAATTAAATAACATAATTTGTGTTTGTCCTATAAAAGCATAAAC
Unaligned ( gi|16 ): TACATGGCAACAATTCATATTTATGTGATTCAGTT