lowQualScore : 1111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 33 333333333333333333333333 4444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444 111 33333333 2222 1111 2222 333333333333 222222 4444444444
lowQualScore : 66 55 11 33 5555 2 4444 2 222222222222222222222222 3333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333 4 444 4 6 3 3 44444444 77 7777 0000 4444 1111 333333333333 44 222222 5 1 1 5555555555 1 3 22 2
lowQualScore : .. .. .. .. .... . .... . ........................ ............................................................................................................. . ... . . . . ........ .. .... .... .... .... ............ .. ...... . . . .......... . . .. .
lowQualScore : 11 33 99 11 0000 2 7777 4 444444444444444444444444 6666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666 0 999 0 4 3 3 22222222 33 1111 0000 2222 8888 888888888888 77 444444 3 7 7 8888888888 7 5 44 5
consensus : AGGCCAAATGA--A--AAAAT--A---GT-TTTG----TTTCCTGTGA-C----C----C----G----A----GTCAATATTT---------T-A--------CAACCC-------ACCCC-CAGAGTCAA-AAAT-TTTTATTGATTTTTT-----TTTT-------AATT---ATTT-TTTA----TTT-GTC-TTTCGCT-CCATTTCGATCCATGAACCA-TG-GAGG-AAAA--AAAAA--GAAA----TT----CC----TACC----GACC---CAA-TNN--TTTT-CCA---GN-ATGTCACAGGAAAC-A-AA------NA--A-T-T--TTTTCATTTGGCCT
Reference ( gi|4 ) : AGGCCAAATGA--A--AA--T--A---GT-TTTG----TTTCCTGTGA-C----C----T----G----A----GTCAATATTT---------TTA--------CAACCC-------ACTTC-CAGAGTCAA-AAATCTTTTATTGATTTTTT-----TTTT-------AATT---ATTT-TTTA----TTTGGTC-TTCCACT-CCATTTCGATCCATGAATCA-TG-GAGGGGAAA--AAAAA--GAAA----TT----CC----TACC----GACC---CAA-CAA--TTTT-CCA---GA-ATGCCACAGGAAAC-A-AA------TA--A-T-T--TTTTCATTTGGCTT
gi|3 : AGGCCAAATGA--A--AA--AGAA---GT-TCTG----TTTCCTGTGA-C----CAGACT----G----A----GTCAATATTT---------TAATTCCACTTCAACCCTC-----ACCTT-TA-AGTCAA-AAATGTTT-ATTGATTTTTT-----TTTT-------AAAT---GTTT-TTT------TTG-TC-TTTCACT-CCTTTTCGATCCATGAACCA-TG-GAG---------AAAA--AAAA----TT----CC----TACCTACTGGCC---CAA-TTT--TTTT-CCA---AC-ATGTTGCAGGAAAC---CA------T---A-T-T--TTTTTATTTGG
gi|5 : AGGCCAAATGA--A--AAAAT--A---GT-TTTG----TTTCCTGTGA-C----C----C----G----ATCGCGTTGATATTT---------T-----------AACCC-------CCTCC-C-----CAT-AA---TTTTATTGATTTTTTATGTGTTTT---------TT---TTTT-TTTAATTTTTTTTTT-TTTTACTTCCATTTTGATCTATGCAACA-TA-TAG----AA--AAAAA--GGAC----CT----CCCATCTACC----AACC---CAA-T----TTTTATCA---GGCATGTCACAGGAAAC-A-AA-------A--A-TAT--TTTTCAT
gi|2 : gAGGCCAAATGA--A--AAAAT--A---GT-TTTG----TTCCCTGTGA-C----C----C----G----ATCATGTCAATATTT---------T-----------AACCC-------A------ATAGTCGA-AAAGTTTTTGTTTATTTTAT-----TTTT-------AA-----A-GT-TTAA----TT--GTC-TTTCTCT-CCATTTCAATTCAAGAACCA-TG-G-------T--AAAAT--GAAA----TT----CC----TACCTAT-GACC---CA---AA--TTTT-acg
gi|7 : tgataAGGCCAAATAA--A--AAAAT--A---TT-TTTG----TTTTCTGTCA-A----C----T----G----ACCAGGTCAATATTT---------T-----------AACCC-----------C-C-GAATCAA-A--------------TTTTT-----TTTTAAAAAAAAATT---ATTGATTTA----TTT--TT-TTTTGTT-CCATTGTGACCAATGAACCA-TG-GAGGTGAAA--AAAAAT-GTTA----TTCCCACC----TACC----GACC---CAA-T----TTTT-ACA---G---------AGGAAAC-A-AA------AAT-A-T-T--TTCTCATTTGGCatttcaatattcataattgtgtacctgtacttacttaaatactgtattttctgttaattattacactgattaaa
gi|9 : AGGTCAAATGA--ATAAA--T--A---GT-TTAG----TTTTCTGTGA-C----C----CAACCG----A----GTCAATAATG---------TAA--------CCCCCC-------CCCCC-CAG------------TGTTACTGATGTTTT-----TTTC---------------------------TTTCGTC-TTTCAAT-CTATTTCGATCCATAAACCA-TG-GAGGAAAAA--AAAAAAGAAAA----TT----TC----TAc
gi|10 : aAGGCCAAGTGA--A--AAAAT--A---GT-TTTG----TTTCTTGTGAGCTGA-C----T----G----A----GTCAATATTT---------------------AAC-------------T-CAAAGTAAA-AAAAAAAATATTGATTTTTTTTTC-TTTT-------AATT---CTTT-TTTA--------GTCATT--GCT-CCATTTCAATCCGTG--TCACTG-GA----AAC--AAAAA--gtatgtcataaaattttttatttttttttatttggc
gi|10 : tAGGTCAAATGA--AC-AA--T--A---TT-TTTG----TTTCCAGTGA-C----tattgttcatttgaccttatttggttggcggatat
gi|1 : taggccaagtgaaaaaatagttttgtttcttgtgagctgactgagtcaatatttaactcaaagtaaaaaaaaaaatattgatttttttttcttttaattcttttttagtcattgctccatttcaatccgtAGGCCAAATGATAA--AAC-T--A---GT-TTTGTTTGTTTCCTGTGA-CTTGAC----T----G----A----GTCAATATTTACCCCCAACCTC--------CAACCCCGACCCAACACCGCAAAGTC-A-GAATTTTTTTTTTTTTTTTT-----TTTT-------AA-----ATTT-T-----------GTC-TT--AAT----TTTTGA------AACCA-TGAGAGAGAAGAGTAAAAA--AAAA----TCCTA-CC----TACC----GACC-------CGA--TTTT-tatttggttggcggatat
gi|16 : taAGGCCAAATTA--A--AACAT--A---GT-TTTG----TTTCCTGTGA-C----CTGATT----G----A----GTCAATGTTT---------TTA--------C--CCC-------Atttttcatatatttatatataactatgaaataaatagtattttgtactgagttcacctgattacaa
gi|12 : ttAAGCCAAATGA--A--AA--A--A---TTATTTG----TTTCCTGTGG-C----gagt
gi|18 : gaatAGGCCAAATGA--A--AAGCT--T---GT-TTTG----TTTCCTGTAG-T----C----T----G----A----tattcagctggcaggttattggtcaccaatcagagcattattttgtttgccttgaatctacagtgatatcacatcaccttcttcttctg
gi|7 : cGGCCAAATGAGAA--AA--T--A---TT-TTTG----TTTCCTCTGccg
gi|8 : aggccaaataaaaaaatatttttgttttctgtcaactgaccaggtcaatattttaacccccgaatcaaatttttttttaaaaaaaaattattgatttatttttttttgttccattgtgaccaatgaaccatggaggtgaaaaaaaatgttattcccacctaccgacccaatttttaGGCTTAATGA--A--AAAAT--A---GT-TTTG----TTTCCTGTGA-C----CGAC-C----A----A----GTCAATATTT---------TTA--------C--------------CTC-C-GAGTCAATAGAT-TTTTATTGACATTTT-----GTTT-----------------T-TGTA----TATGG-------------------ATCCATGAACCA-TG-GAG-----A--AAAAA--GAAA----CT----CC----TAACTATTGACC---CAA-TTT--TTTT-ACA---GC-ACGTCACAGGAAAC-A-AA------AAT-A-T-T--TTTTCAT
gi|11 : GCAAAATGA--A--AAAAT--A---TT-TTTG----TTTCAGGTGA-C----A----T----G----A-------AACTTTT---------TT
gi|13 : caaaaatattttattgaatttattttttgtttttcactccatttcaatccatgaagcaaagagaaaaaaaaagaaattccttcctactgaccaaaGCCAAATGA--A--AAAAT--A---TT-TTTG----TTTCCTGTGA-C----A----T----G----t
gi|6 : agtttgtttttgtatttttttaaaaactttttgaaccatgagagaaaacaaaaagaaatccctatctaccgaccaaatttttccccctgCCATATGA--A--AA--A--ATTTGT-TGTG----TTTCCTGTGA-C----C----C----GACCCA----GTAAATATTT---------T-----------AATC------------C-CAGTATC-A-AAAT---------ATTCTTT-----TCTT-------AATTTTCATTT-TTT-----TTT-GTC-TTTCGCC-CCATTTTGCTCTTTGAACAA-T---AGGAGAAA--AAAAA--TACC----TA----CC----TACC----AACC---CAATTTT--TTTT-TCA---GC-ATGTCACAGAAATT-----------TT--T-T-T--TTTTCATTTGGCT
gi|5 : aATGA--A--AAA-T--A---TT-TTTG----TTTCCTGTGA-C----A----T----G----ta
gi|8 : gaggccaaatgaaaaaatagttttgtttcctgtgacccgatcgcgttgatattttaaccccctccccataattttattgattttttatgtgtttttttttttttaattttttttttttttacttccattttgatctatgcaacatatagaaaaaaaggacctcccatctaccaacccaatttttatcaggA--A--AA--T--A---TT-TTTG----TTTCCTGTGA-C----G----T----G----acg
gi|11 : ggcttaatgaaaaaatagttttgtttcctgtgaccgaccaagtcaatatttttacctccgagtcaatagatttttattgacattttgtttttgtatatggatccatgaaccatggagaaaaaagaaactcctaactattgacccaatttttttacagCAA-AAATATTTTATTGA----------------------ATTT---ATTT-TTT---------GTT-TTTCACT-CCATTTCAATCCATGAAGCA----AAGAGAAAA--AAAAA--GAAATTCCTT----CC----TACT----GACCAAAAAA-AAA--GTTT-C--------ATGTCACCTGAAAC-A-AA------AAT-A-T-T--TTTTCATTTTGCTttcat
gi|14 : TCGATCCATGTACCA-GG-GAGG-------AAAAA--AAAA----TT----CCCACTTACT----AACC---CAA-TTT--TTTT-CCA---A-------ACAA------A-AA------TAC-A-T-T--TTTTCATTTGGC
gi|13 : TGAACCA-TG--AGAGAAAAC-AAAAA--GAAA----TC----CC----TATC----TACC---GAC-CAAATTTTT-CCCCCTGC-ATGTCACAGGAAAC-A-AA------AAT-A-T-T--TTTTCATTTGGCc
gi|15 : agtttgtttttgtatttttttaaaaacttttAA--AAAAA--AAAA----TCCCTACC----TACC----GACC---C-A-TAT--TTTT-TTG---GGCATGTAACAGGAAAC-A-AA------C---C-T-T--TTTT
gi|17 : --TTTT-TCA---AT-ATGTCATAGGAAGC-A-AA------AAT-A-T-T--TTTTCAATTGGagg
gi|18 : caattCA---GA----CTACAGGAAAC-A-AAA-----CA--A-G-C--TTTTCATTTGGCC
gi|12 : c---GA-ATGCCACAGGAAAC-A-AA------TA--A-T-T--TTTTCATTTGGCTaccg
gi|10 : TGTCACTGGAAAC-A-AA-------A--A-TAT--TGTTCATTTGACCtattcagctggcaggttattggtcaccaatcagagcattattttgtttgccttgaatctacagtgatatcacatcaccttcttcttctg
gi|3 : taggccaagtgaaaaaatagttttgtttcttgtgagctgactgagtcaatatttaactcaaagtaaaaaaaaaaatattgatttttttttcttttaattcttttttagtcattgctccatttcaatccgGTCACAGGAAAC-A-GA-------A--C-T-TCTTTTTCATTTGGCCtatttggttggcggatat
gi|5 : GTCACAGGAAAC-A-AA-------ACTA-T-T--TTTTCATTTGGCCcagactgagtcaatattttaattccacttcaaccctcacctttaagtcaaaaatgtttattgattttttttttaaatgttttttttgtctttcactccttttcgatccatgaaccatggagaaaaaaaattcctacctactggcccaatttttttccaacatgttgcaggaaaccatatttttttatttgg
gi|2 : gGTCACAGGGAAC-A-AA-------ACTA-T-T--TTTTCATTTGGCCccgatcgcgttgatattttaaccccctccccataattttattgattttttatgtgtttttttttttttaattttttttttttttacttccattttgatctatgcaacatatagaaaaaaaggacctcccatctaccaacccaatttttatcaggcatgtcacaggaaacaaaaatatttttcatacg
gi|8 : tgataGTCACAGGAAAC-A-AAAC----T---A-T-T--TTTTCATTccgatcatgtcaatattttaacccaatagtcgaaaagtttttgtttattttatttttaaagtttaattgtctttctctccatttcaattcaagaaccatggtaaaatgaaattcctacctatgacccaaattttatttcaatattcataattgtgtacctgtacttacttaaatactgtattttctgttaattattacactgattaaa
gi|6 : ggcttGTCACAGGAAAC-ACAA------CA--AAT-T--TTTTCATATGGcgaccaagtcaatatttttacctccgagtcaatagatttttattgacattttgtttttgtatatggatccatgaaccatggagaaaaaagaaactcctaactattgacccaatttttttacagcacgtcacaggaaacaaaaatattttttcat
gi|9 : aGTCACAGAAAACTA-AA------CT--A-T-T--TATTCATTTGACCccgacccagtaaatattttaatcccagtatcaaaatattcttttcttaattttcatttttttttgtctttcgccccattttgctctttgaacaataggagaaaaaaaatacctacctaccaacccaatttttttttcagcatgtcacagaaatttttttttttcatttggcttta
gi|1 : aGTCACAGGAAAC-A-AACAAAACTA--G-T-T--TTATCATTTGGCCccaaccgagtcaataatgtaaccccccccccccagtgttactgatgtttttttctttcgtctttcaatctatttcgatccataaaccatggaggaaaaaaaaaaagaaaatttctagtatgtcataaaattttttatttttttttatttggc
gi|16 : taGTCACAGGAAAC-A-AAAC----T---A-T-G--TTTTAATTTGGCCttgactgagtcaatatttacccccaacctccaaccccgacccaacaccgcaaagtcagaatttttttttttttttttttttaaattttgtcttaatttttgaaaccatgagagagaagagtaaaaaaaaatcctacctaccgacccgatttttttttcatatatttatatataactatgaaataaatagtattttgtactgagttcacctgattacaa
gi|10 : ttCACAAGAAAC-A-AA-------ACTA-T-T--TTTTCACTTGGCCctgattgagtcaatgtttttaccccagagt
gi|7 : tACAGAAAAC-A-AA------AAT-A-T-T--TTTTTATTTGGCCagctgactgagtcaatatttaactcaaagtaaaaaaaaaaatattgatttttttttcttttaattcttttttagtcattgctccatttcaatccgtgtcactggaaacaaaaatattgttcatttgaccttatttggttggcggatat
Alignments
lowQualScore : 3333333333333333 88888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888 22222 2222 2222 1111111 111111111111 22222
lowQualScore : 3 1 3 6666 77777 3 5555555555555555 3 55555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555 3 8888 55 3 6 11111 33 555 1111 6666 6666 6666 6666 0000 3 3 1111111 999999999999 2 44444 3
lowQualScore : . . . .... ..... . ................ . .................................................................................................................... . .... .. . . ..... .. ... .... .... .... .... .... .... . . ....... ............ . ..... .
lowQualScore : 1 5 1 5555 77777 1 7777777777777777 6 33333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333 6 0000 00 1 2 55555 99 444 5555 5555 5555 5555 5555 0000 1 1 8888888 888888888888 9 66666 1
consensus : AGGCCAAATGA-AAAAATA-GTTTTG----TTTCCTG-----TGA-C----C----CGA----GTCAAT-ATTT----------T-A---------CAACCC--ACCC--C----CAGAGT-----C-AA-AAAT-TTTTATTGAT-TTTTT-----TTTT-------AATT---ATTT-TTTA-----TTTG-TCTTTCGC-TCCA--TTTCGATCCATGAACCA-TG-GAG--GA-AAA--AAAAA---GAAATT----C----C----T----A----CC----GACCC-A-A-TTT---TTTTCCA-------GCATGTCAC-AGGAAACAAANAT--AT-TTTTTCATTTGGCTT
Reference ( family-2562 ) : AGGCCAAATGA-AAAAATA-GTTTTG----TTTCCTG-----TGA-C----C----CGA----GTCAAT-ATTT----------T-A---------CAACCC--ACCC--C----CAGAGT-----C-AA-AAAT-TTTTATTGAT-TTTTT-----TTTT-------AATT---ATTT-TTTA-----TTTG-TCTTTCGC-TCCA--TTTCGATCCATGAACCA-TG-GAG--GA-AAA--AAAAA---GAAATT----C----C----T----A----CC----GACCC-A-A-TNN---TTTTCCA-------GNATGTCAC-AGGAAACAAANA---AT-TTTTTCATTTGGCCT
gi|1 : AGGCCAAATGATAAAACTA-GTTTTGTTTGTTTCCTG-----TGA-CTTGAC----TGA----GTCAAT-ATTTACCCCCAACCT-C---------CAACCCCGACCCAACACCGCAAAGT-----C--A-GAAT-TTTT-----T-TTTTT-----TTTT---------------TTT-TTTAAAT--TTTG-TCTT--------AATTTTTGA------AACCA-TGAGAGA-GA-AGAGTAAAAA---AAAATCCTA-C----C----T----A----CC----GACCC-G-ATTTT---TTTTTCATATATTTATATATAACTATGAAATAAATA---GT-ATTTT
gi|10 : taAGGCCAAGTGA-AAAAATA-GTTTTG----TTTCTTG-----TGAGCTGA-C----TGA----GTCAAT-ATTT-----------------------AA--------C--T----CAAAGTAAAAAA-AA-AAAT-ATTGATTTTT-TTTTC-----TTTT-------AATT---CTTT-TTTA--------G-TCATT-GC-TCCA--TTTCAATCCGTG--TCACTG-GAA--AC-AAA--AAgtactgagttcacctgattacaa
gi|10 : tAGGTCAAATGA-ACAA-TA-TTTTTG----TTTCCAG-----TGA-C----A----CGtattgttcatttgaccttatttggttggcggatat
gi|11 : taggccaagtgaaaaaatagttttgtttcttgtgagctgactgagtcaatatttaactcaaagtaaaaaaaaaaatattgatttttttttcttttaattcttttttagtcattgctccatttcaatc-----C-AA-AAATATTTTATTGAA-TTT-------------------------ATTT-TTT---------G-TTTTTCAC-TCCA--TTTCAATCCATGAAGCA-AA-GAG---A-AAA--AAAAA---GAAATT----C----C----TTCCTA----CT----GACCA-A-A-AAAAAAGTTTC-----------ATGTCAC-CTGAAACAAAAAT--AT-TTTTTCATTTTGCtatttggttggcggatat
gi|12 : -------GAATGCCAC-AGGAAACAAATA---AT-TTTTTCATTTGGCTTt
gi|13 : TGAACCA-TGAGAG--AA-AAC--AAAAA---GAAATC----C----C----T----ATCTACC----GACCA-A-A-TTT---TTCCCCCT------GCATGTCAC-AGGAAACAAAAAT--AT-TTTTTCATTTGGCtattcagctggcaggttattggtcaccaatcagagcattattttgtttgccttgaatctacagtgatatcacatcaccttcttcttctg
gi|14 : agtttgtttttgtatttttttaaaaacttttTCGATCCATGTACCA-GG-GAG--GA-AAA--AA-------AAATT----C----CCACTT----A----CT----AACCC-A-A-TTT---TTTTCC---------------------AAACAAAAATACAT-TTTTTCATTTGGCC
gi|15 : AA--AAAAA---AAAATCCCTAC----C----T----A----CC----GACCC-ATA-TTT---TTTT-GG-------GCATGTAAC-AGGAAACAAAC----CT-TTTTT
gi|16 : AGGCCAAATTA-AAACATA-GTTTTG----TTTCCTG-----TGA-C----CTGATTGA----GTCAAT-GTTT----------T-----------TA--------CC--C----CAGAGT-----agg
gi|17 : ttC-A-A-TTT---TTTTC-A-------ATATGTCAT-AGGAAGCAAAAAT--AT-TTTTTCAATTGG
gi|18 : AGGCCAAATGA-AAAGCTT-GTTTTG----TTTCCTG-----TAG-T----C----TGA----
gi|2 : cAGGCCAAATGA-AAAAATA-GTTTTG----TTCCCTG-----TGA-C----C----CGATCATGTCAAT-ATTT----------T------------AACCC--A-----------ATAGT-----CGAA-AAGT-TTTTGTTTAT-TTTAT-----TTTT-------AA-----A--G-TTTA-----ATTG-TCTTTCTC-TCCA--TTTCAATTCAAGAACCA-TG-G---------T--AAAAT---GAAATT----C----C----T----A----CCTAT-GACCCAA-A-TTT---TATTTCA-------ATAT-TCAT-Accg
gi|3 : tgataAGGCCAAATGA-AAAAGAA-GTTCTG----TTTCCTG-----TGA-C----CAGACTGA----GTCAAT-ATTT----------T-AATTCCACTTCAACCCTCACCT--T----TA-AGT-----C-AA-AAAT-GTTTATTGAT-TTTTT-----TTTT-------AAAT---GTTT-TTT-------TTG-TCTTTCAC-TCCT--TTTCGATCCATGAACCA-TG-GAG-----------AAAA---AAAATT----C----C----T----A----CCTACTGGCCC-A-A-TTT---TTTTCCA-------ACATGTTGC-AGGAAAC---CAT--AT-TTTTTTATTTGGattgtgtacctgtacttacttaaatactgtattttctgttaattattacactgattaaa
gi|4 : AGGCCAAATGA-AAA--TA-GTTTTG----TTTCCTG-----TGA-C----C----TGA----GTCAAT-ATTT----------TTA---------CAACCC--ACTT--C----CAGAGT-----C-AA-AAATCTTTTATTGAT-TTTTT-----TTTT-------AATT---ATTT-TTTA-----TTTGGTCTTCCAC-TCCA--TTTCGATCCATGAATCA-TG-GAG--GGGAAA--AAAAA---GAAATT----C----C----T----A----CC----GACCC-A-A-CAA---TTTTCCA-------GAATGCCAC-AGGAAACAAATA---AT-TTTTTCATTTGGCTT
gi|5 : AGGCCAAATGA-AAAAATA-GTTTTG----TTTCCTG-----TGA-C----C----CGATCGCGTTGAT-ATTT----------T------------AACCC--CCTC--C----C----------C-AT-AA---TTTTATTGAT-TTTTTATGTGTTTT---------TT---TTTT-TTTAATTTTTTTT-TTTTTTACTTCCA--TTTTGATCTATGCAACA-TA-TAG------AA--AAAAA---GGACCT----CCCATC----T----A----CC----AACCC-A-A-TTT---TTATCAG-------GCATGTCAC-AGGAAACAAA-A---ATATTTTTCAT
gi|6 : gCCATATGA-AAAAATTTGTTGTG----TTTCCTG-----TGA-C----C----CGACCCAGTAAAT-ATTT----------T-A-----------------ATCC--C-----AGTAT-----C-AA-AA---------T-AT-TCTTT-----TCTT-------AATTTTCATTT-TTT------TTTG-TCTTTCGC-CCCA--TTTTGCTCTTTGAACAA-T---AG--GA-GAA--AAAAA---ATACCTA---C----C----T----A----CC----AACCC-A-ATTTT---TTTTTCA-------GCATGTCAC-AGAAATT---TT---TT-TTTTTCATTTGGCTTacg
gi|7 : aAGGCCAAATAA-AAAAATA-TTTTTG----TTTTCTGTCAACTGA-C----C----AG-----GTCAAT-ATTT----------T-A-----------------ACCC--C----C-GAAT-----C-AA-A---------------TTTTT-----TTTTAAAAAAAAATT---ATTGATTTA-----TTT--TTTTTTGT-TCCA--TTGTGACCAATGAACCA-TG-GAGGTGA-AAA--AAAAT---GTTATTCCCAC----C----T----A----CC----GACCC-A-A-T-----TTTTACA-------G---------AGGAAACAAAAAT--AT-TTTCTCATTTGGCCta
gi|8 : GGCTTAATGA-AAAAATA-GTTTTG----TTTCCTG-----TGA-C----CGAC-CAA----GTCAAT-ATTT----------T----------------T--ACCT--C----C-GAGT-----C-AATAGAT-TTTTATTGAC-ATTTT-----GTTT-----------------------------TTG-T-----------A--TATGGATCCATGAACCA-TG-GAG-------A--AAAAA---GAAACT----C----C----T----A----ACTATTGACCC-A-A-TTT---TTTTACA-------GCACGTCAC-AGGAAACAAAAAT--AT-TTTTTCAT
gi|9 : AGGTCAAATGA-ATAAATA-GTTTAG----TTTTCTG-----TGA-CCCAAC----CGA----GTCAATAATGT----------A-A---------CCCCCC--CCCC--C----CAG------------------TGTTACTGATGTTTTT-----TTCT----------------------------TTCG-TCTTTCAA-TCTA--TTTCGATCCATAAACCA-TG-GAG--GA-AAA--AAAAAAAGAAAATT----T----C----T----A----
Alignments
lowQualScore : 3333333333333333 88888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888 11111 2222222222 1111 1111111 1111111111
lowQualScore : 3 3 7777 88888 3 7777777777777777 3 55555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555 3 8888 55 3 6 77777 33 2222222222 6666 6666 6666 8888 2 2 5555555 4444444444 0 2 1 777777 3333
lowQualScore : . . .... ..... . ................ . .................................................................................................................... . .... .. . . ..... .. .......... .... .... .... .... . . ....... .......... . . . ...... ....
lowQualScore : 3 3 1111 33333 3 8888888888888888 6 33333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333 6 0000 00 1 2 77777 99 6666666666 5555 5555 5555 5555 9 9 0000000 6666666666 9 5 7 777777 9999
consensus : AGGCCAAATGA-AAAAATA-GTTTTG----TTTCCTG-----TGA-C----C----CGA----GTCAAT-ATTT----------T-A---------CAACCC--ACCC--C----CAGAGT-----C-AA-AAAT-TTTTATTGAT-TTTTT-----TTTT-------AATT---ATTT-TTTA-----TTTG-TCTTTCGC-TCCA--TTTCGATCCATGAACCA-TG-GAG--GA-AAA--AAAAAGAAA----TT----C----C----TA----CC----GACCC-A-A-------TTTTTTTCCA-------GCATGTCAC-AGGAAACAAA-----NA-T--ATTTTTTCATTTGGCTT
Reference ( family-2562 ) : AGGCCAAATGA-AAAAATA-GTTTTG----TTTCCTG-----TGA-C----C----CGA----GTCAAT-ATTT----------T-A---------CAACCC--ACCC--C----CAGAGT-----C-AA-AAAT-TTTTATTGAT-TTTTT-----TTTT-------AATT---ATTT-TTTA-----TTTG-TCTTTCGC-TCCA--TTTCGATCCATGAACCA-TG-GAG--GA-AAA--AAAAAGAAA----TT----C----C----TA----CC----GACCC-A-A-------TTTTTTTCCA-------GCATGTCAC-AGGAAACAAA-----NA-T--ATTTTTTCATTTGGCTT
gi|1 : AGGCCAAATGATAAAACTA-GTTTTGTTTGTTTCCTG-----TGA-CTTGAC----TGA----GTCAAT-ATTTACCCCCAACCT-C---------CAACCCCGACCCAACACCGCAAAGT-----C--A-GAAT-TTTT-----T-TTTTT-----TTTT---------------TTT-TTTAAAT--TTTG-TCTT--------AATTTTTGA------AACCA-TGAGAGA-GA-AGAGTAAAAAAAAA----TCCTA-C----C----TA----CC----GACCC-G-AT------TTTTTTTTCATATATTTATATATAACTATGAAATAAA-----TAGT--ATTTT
gi|10 : taAGGCCAAGTGA-AAAAATA-GTTTTG----TTTCTTG-----TGAGCTGA-C----TGA----GTCAAT-ATTT-----------------------AA--------C--T----CAAAGTAAAAAA-AA-AAAT-ATTGATTTTT-TTTTC-----TTTT-------AATT---CTTT-TTTA--------G-TCATT-GC-TCCA--TTTCAATCCGTG--TCACTG-GAA--AC-AAA--AAgtactgagttcacctgattacaa
gi|10 : tCGTGTCAC-TGGAAACAAA-----AA-T--A-TTGTTCATTTGACCTtattgttcatttgaccttatttggttggcggatat
gi|11 : taggccaagtgaaaaaatagttttgtttcttgtgagctgactgagtcaatatttaactcaaagtaaaaaaaaaaatattgatttttttttcttttaattcttttttagtcattgctccatttcaatc-----C-AA-AAATATTTTATTGAA-TTT-------------------------ATTT-TTT---------G-TTTTTCAC-TCCA--TTTCAATCCATGAAGCA-AA-GA---GA-AAA--AAAAAGAAATTCCTT----C----C----TA----CT----GACCA-A-AAAAAAAGTTT---------------CATGTCAC-CTGAAACAAA-----AA-T--ATTTTTTCATTTTGCTtatttggttggcggatat
gi|12 : ATGCCAC-AGGAAACAAA-----TA----ATTTTTTCATTTGGCTT
gi|13 : gaTGAACCA-TGAGAG--AA-AAC--AAAAAGAAA----TC----C----C----TATCTACC----GACCA-A-A-------TTTTTCCCCCT------GCATGTCAC-AGGAAACAAA-----AA-T--ATTTTTTCATTTGGCtattcagctggcaggttattggtcaccaatcagagcattattttgtttgccttgaatctacagtgatatcacatcaccttcttcttctg
gi|14 : agtttgtttttgtatttttttaaaaacttttTCGATCCATGTACCA-GG-GAG--GA-AAA--AAAAA--------TT----C----CCACTTA----CT----AACCC-A-A-------TTTTTTTCC---------------------AAACAAA-----AA-TACATTTTTTCATTTGGC
gi|15 : AA--AAAAAAAAA----TCCCTAC----C----TA----CC----GACCC-ATA-------TTTTTTT-GG-------GCATGTAAC-AGGAAACAAA-----CC-T---TTTTTc
gi|16 : AGGCCAAATTA-AAACATA-GTTTTG----TTTCCTG-----TGA-C----CTGATTGA----GTCAAT-GTTT----------T-----------TA--------CC--C----CAGAGT-----agg
gi|17 : ttC-A-A-------TTTTTTTC-A-------ATATGTCAT-AGGAAGCAAA-----AA-T--ATTTTTTCAATTGG
gi|18 : AGGCCAAATGA-AAAGCTT-GTTTTG----TTTCCTG-----TAG-T----C----TGA----
gi|2 : cAGGCCAAATGA-AAAAATA-GTTTTG----TTCCCTG-----TGA-C----C----CGATCATGTCAAT-ATTT----------T------------AACCC--A-----------ATAGT-----CGAA-AAGT-TTTTGTTTAT-TTTAT-----TTTT-------AA-----A--G-TTTA-----ATTG-TCTTTCTC-TCCA--TTTCAATTCAAGAACCA-TG-G---------T--AAAATGAAA----TT----C----C----TA----CCTAT-GACCCAA-A-------TTTTATTTCA-------ATAT-TCAT-Accg
gi|3 : tgataAGGCCAAATGA-AAAAGAA-GTTCTG----TTTCCTG-----TGA-C----CAGACTGA----GTCAAT-ATTT----------T-AATTCCACTTCAACCCTCACCT--T----TA-AGT-----C-AA-AAAT-GTTTATTGAT-TTTTT-----TTTT-------AAAT---GTTT-TTT-------TTG-TCTTTCAC-TCCT--TTTCGATCCATGAACCA-TG-GAG-----------AAAAAAAA----TT----C----C----TA----CCTACTGGCCC-A-A-------TTTTTTTCCA-------ACATGTTGC-AGGAAAC--------CA-T--ATTTTTTTATTTGGattgtgtacctgtacttacttaaatactgtattttctgttaattattacactgattaaa
gi|4 : AGGCCAAATGA-AAA--TA-GTTTTG----TTTCCTG-----TGA-C----C----TGA----GTCAAT-ATTT----------TTA---------CAACCC--ACTT--C----CAGAGT-----C-AA-AAATCTTTTATTGAT-TTTTT-----TTTT-------AATT---ATTT-TTTA-----TTTGGTCTTCCAC-TCCA--TTTCGATCCATGAATCA-TG-GAG--GGGAAA--AAAAAGAAA----TT----C----C----TA----CC----GACCC-A-A-------CAATTTTCCA-------GAATGCCAC-AGGAAACAAA-----TA----ATTTTTTCATTTGGCTT
gi|5 : AGGCCAAATGA-AAAAATA-GTTTTG----TTTCCTG-----TGA-C----C----CGATCGCGTTGAT-ATTT----------T------------AACCC--CCTC--C----C----------C-AT-AA---TTTTATTGAT-TTTTTATGTGTTTT---------TT---TTTT-TTTAATTTTTTTT-TTTTTTACTTCCA--TTTTGATCTATGCAACA-TA-TAG------AA--AAAAAGGAC----CT----CCCATC----TA----CC----AACCC-A-A-------TTTTTATCAG-------GCATGTCAC-AGGAAACAAA-----AA-T--A-TTTTTCAT
gi|6 : gCCATATGA-AAAAATTTGTTGTG----TTTCCTG-----TGA-C----C----CGACCCAGTAAAT-ATTT----------T-A-----------------ATCC--C-----AGTAT-----C-AA-AA---------T-AT-TCTTT-----TCTT-------AATTTTCATTT-TTT------TTTG-TCTTTCGC-CCCA--TTTTGCTCTTTGAACAA-T---AG--GA-GAA--AAAAAATAC----CTA---C----C----TA----CC----AACCC-A-AT------TTTTTTTTCA-------GCATGTCAC-A-GAAAT--------TT-T--TTTTTTTCATTTGGCTTacg
gi|7 : aAGGCCAAATAA-AAAAATA-TTTTTG----TTTTCTGTCAACTGA-C----C----AG-----GTCAAT-ATTT----------T-A-----------------ACCC--C----C-GAAT-----C-AA-A---------------TTTTT-----TTTTAAAAAAAAATT---ATTGATTTA-----TTT--TTTTTTGT-TCCA--TTGTGACCAATGAACCA-TG-GAGGTGA-AAA--AAAATGTTA----TTCCCAC----C----TA----CC----GACCC-A-A---------TTTTTACA-------G---------AGGAAACAAA-----AA-T--ATTTTCTCATTTGGCta
gi|8 : GGCTTAATGA-AAAAATA-GTTTTG----TTTCCTG-----TGA-C----CGAC-CAA----GTCAAT-ATTT----------T----------------T--ACCT--C----C-GAGT-----C-AATAGAT-TTTTATTGAC-ATTTT-----GTTT-----------------------------TTG-T-----------A--TATGGATCCATGAACCA-TG-GAG-------A--AAAAAGAAA----CT----C----C----TA----ACTATTGACCC-A-A-------TTTTTTTACA-------GCACGTCAC-AGGAAACAAA-----AA-T--ATTTTTTCATc
gi|9 : AGGTCAAATGA-ATAAATA-GTTTAG----TTTTCTG-----TGA-CCCAAC----CGA----GTCAATAATGT----------A-A---------CCCCCC--CCCC--C----CAG------------------TGTTACTGATGTTTTT-----TTCT----------------------------TTCG-TCTTTCAA-TCTA--TTTCGATCCATAAACCA-TG-GAG--GA-AAA--AAAAAAAGA---------------------A----------------A-A-----------TTTCTA-------GTATGTCAT-A------AAATTTTTTA-T--TTTTTTTTATTTGGC
Alignments
lowQualScore : 3333333333333333 88888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888 11111 2222222222 1111 1111111 1111111111
lowQualScore : 3 3 7777 88888 3 7777777777777777 3 55555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555 3 8888 55 3 6 77777 33 2222222222 6666 6666 6666 8888 2 2 5555555 4444444444 0 2 1 777777 3333
lowQualScore : . . .... ..... . ................ . .................................................................................................................... . .... .. . . ..... .. .......... .... .... .... .... . . ....... .......... . . . ...... ....
lowQualScore : 3 3 1111 33333 3 8888888888888888 6 33333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333 6 0000 00 1 2 77777 99 6666666666 5555 5555 5555 5555 9 9 0000000 6666666666 9 5 7 777777 9999
consensus : AGGCCAAATGA-AAAAATA-GTTTTG----TTTCCTG-----TGA-C----C----CGA----GTCAAT-ATTT----------T-A---------CAACCC--ACCC--C----CAGAGT-----C-AA-AAAT-TTTTATTGAT-TTTTT-----TTTT-------AATT---ATTT-TTTA-----TTTG-TCTTTCGC-TCCA--TTTCGATCCATGAACCA-TG-GAG--GA-AAA--AAAAAGAAA----TT----C----C----TA----CC----GACCC-A-A-------TTTTTTTCCA-------GCATGTCAC-AGGAAACAAA-----NA-T--ATTTTTTCATTTGGCTT
Reference ( family-2562 ) : AGGCCAAATGA-AAAAATA-GTTTTG----TTTCCTG-----TGA-C----C----CGA----GTCAAT-ATTT----------T-A---------CAACCC--ACCC--C----CAGAGT-----C-AA-AAAT-TTTTATTGAT-TTTTT-----TTTT-------AATT---ATTT-TTTA-----TTTG-TCTTTCGC-TCCA--TTTCGATCCATGAACCA-TG-GAG--GA-AAA--AAAAAGAAA----TT----C----C----TA----CC----GACCC-A-A-------TTTTTTTCCA-------GCATGTCAC-AGGAAACAAA-----NA-T--ATTTTTTCATTTGGCTT
gi|1 : AGGCCAAATGATAAAACTA-GTTTTGTTTGTTTCCTG-----TGA-CTTGAC----TGA----GTCAAT-ATTTACCCCCAACCT-C---------CAACCCCGACCCAACACCGCAAAGT-----C--A-GAAT-TTTT-----T-TTTTT-----TTTT---------------TTT-TTTAAAT--TTTG-TCTT--------AATTTTTGA------AACCA-TGAGAGA-GA-AGAGTAAAAAAAAA----TCCTA-C----C----TA----CC----GACCC-G-AT------TTTTTTTTCATATATTTATATATAACTATGAAATAAA-----TAGT--ATTTT
gi|10 : taAGGCCAAGTGA-AAAAATA-GTTTTG----TTTCTTG-----TGAGCTGA-C----TGA----GTCAAT-ATTT-----------------------AA--------C--T----CAAAGTAAAAAA-AA-AAAT-ATTGATTTTT-TTTTC-----TTTT-------AATT---CTTT-TTTA--------G-TCATT-GC-TCCA--TTTCAATCCGTG--TCACTG-GAA--AC-AAA--AAgtactgagttcacctgattacaa
gi|10 : tCGTGTCAC-TGGAAACAAA-----AA-T--A-TTGTTCATTTGACCTtattgttcatttgaccttatttggttggcggatat
gi|11 : taggccaagtgaaaaaatagttttgtttcttgtgagctgactgagtcaatatttaactcaaagtaaaaaaaaaaatattgatttttttttcttttaattcttttttagtcattgctccatttcaatc-----C-AA-AAATATTTTATTGAA-TTT-------------------------ATTT-TTT---------G-TTTTTCAC-TCCA--TTTCAATCCATGAAGCA-AA-GA---GA-AAA--AAAAAGAAATTCCTT----C----C----TA----CT----GACCA-A-AAAAAAAGTTT---------------CATGTCAC-CTGAAACAAA-----AA-T--ATTTTTTCATTTTGCTtatttggttggcggatat
gi|12 : ATGCCAC-AGGAAACAAA-----TA----ATTTTTTCATTTGGCTT
gi|13 : gaTGAACCA-TGAGAG--AA-AAC--AAAAAGAAA----TC----C----C----TATCTACC----GACCA-A-A-------TTTTTCCCCCT------GCATGTCAC-AGGAAACAAA-----AA-T--ATTTTTTCATTTGGCtattcagctggcaggttattggtcaccaatcagagcattattttgtttgccttgaatctacagtgatatcacatcaccttcttcttctg
gi|14 : agtttgtttttgtatttttttaaaaacttttTCGATCCATGTACCA-GG-GAG--GA-AAA--AAAAA--------TT----C----CCACTTA----CT----AACCC-A-A-------TTTTTTTCC---------------------AAACAAA-----AA-TACATTTTTTCATTTGGC
gi|15 : AA--AAAAAAAAA----TCCCTAC----C----TA----CC----GACCC-ATA-------TTTTTTT-GG-------GCATGTAAC-AGGAAACAAA-----CC-T---TTTTTc
gi|16 : AGGCCAAATTA-AAACATA-GTTTTG----TTTCCTG-----TGA-C----CTGATTGA----GTCAAT-GTTT----------T-----------TA--------CC--C----CAGAGT-----agg
gi|17 : ttC-A-A-------TTTTTTTC-A-------ATATGTCAT-AGGAAGCAAA-----AA-T--ATTTTTTCAATTGG
gi|18 : AGGCCAAATGA-AAAGCTT-GTTTTG----TTTCCTG-----TAG-T----C----TGA----
gi|2 : cAGGCCAAATGA-AAAAATA-GTTTTG----TTCCCTG-----TGA-C----C----CGATCATGTCAAT-ATTT----------T------------AACCC--A-----------ATAGT-----CGAA-AAGT-TTTTGTTTAT-TTTAT-----TTTT-------AA-----A--G-TTTA-----ATTG-TCTTTCTC-TCCA--TTTCAATTCAAGAACCA-TG-G---------T--AAAATGAAA----TT----C----C----TA----CCTAT-GACCCAA-A-------TTTTATTTCA-------ATAT-TCAT-Accg
gi|3 : tgataAGGCCAAATGA-AAAAGAA-GTTCTG----TTTCCTG-----TGA-C----CAGACTGA----GTCAAT-ATTT----------T-AATTCCACTTCAACCCTCACCT--T----TA-AGT-----C-AA-AAAT-GTTTATTGAT-TTTTT-----TTTT-------AAAT---GTTT-TTT-------TTG-TCTTTCAC-TCCT--TTTCGATCCATGAACCA-TG-GAG-----------AAAAAAAA----TT----C----C----TA----CCTACTGGCCC-A-A-------TTTTTTTCCA-------ACATGTTGC-AGGAAAC--------CA-T--ATTTTTTTATTTGGattgtgtacctgtacttacttaaatactgtattttctgttaattattacactgattaaa
gi|4 : AGGCCAAATGA-AAA--TA-GTTTTG----TTTCCTG-----TGA-C----C----TGA----GTCAAT-ATTT----------TTA---------CAACCC--ACTT--C----CAGAGT-----C-AA-AAATCTTTTATTGAT-TTTTT-----TTTT-------AATT---ATTT-TTTA-----TTTGGTCTTCCAC-TCCA--TTTCGATCCATGAATCA-TG-GAG--GGGAAA--AAAAAGAAA----TT----C----C----TA----CC----GACCC-A-A-------CAATTTTCCA-------GAATGCCAC-AGGAAACAAA-----TA----ATTTTTTCATTTGGCTT
gi|5 : AGGCCAAATGA-AAAAATA-GTTTTG----TTTCCTG-----TGA-C----C----CGATCGCGTTGAT-ATTT----------T------------AACCC--CCTC--C----C----------C-AT-AA---TTTTATTGAT-TTTTTATGTGTTTT---------TT---TTTT-TTTAATTTTTTTT-TTTTTTACTTCCA--TTTTGATCTATGCAACA-TA-TAG------AA--AAAAAGGAC----CT----CCCATC----TA----CC----AACCC-A-A-------TTTTTATCAG-------GCATGTCAC-AGGAAACAAA-----AA-T--A-TTTTTCAT
gi|6 : gCCATATGA-AAAAATTTGTTGTG----TTTCCTG-----TGA-C----C----CGACCCAGTAAAT-ATTT----------T-A-----------------ATCC--C-----AGTAT-----C-AA-AA---------T-AT-TCTTT-----TCTT-------AATTTTCATTT-TTT------TTTG-TCTTTCGC-CCCA--TTTTGCTCTTTGAACAA-T---AG--GA-GAA--AAAAAATAC----CTA---C----C----TA----CC----AACCC-A-AT------TTTTTTTTCA-------GCATGTCAC-A-GAAAT--------TT-T--TTTTTTTCATTTGGCTTacg
gi|7 : aAGGCCAAATAA-AAAAATA-TTTTTG----TTTTCTGTCAACTGA-C----C----AG-----GTCAAT-ATTT----------T-A-----------------ACCC--C----C-GAAT-----C-AA-A---------------TTTTT-----TTTTAAAAAAAAATT---ATTGATTTA-----TTT--TTTTTTGT-TCCA--TTGTGACCAATGAACCA-TG-GAGGTGA-AAA--AAAATGTTA----TTCCCAC----C----TA----CC----GACCC-A-A---------TTTTTACA-------G---------AGGAAACAAA-----AA-T--ATTTTCTCATTTGGCta
gi|8 : GGCTTAATGA-AAAAATA-GTTTTG----TTTCCTG-----TGA-C----CGAC-CAA----GTCAAT-ATTT----------T----------------T--ACCT--C----C-GAGT-----C-AATAGAT-TTTTATTGAC-ATTTT-----GTTT-----------------------------TTG-T-----------A--TATGGATCCATGAACCA-TG-GAG-------A--AAAAAGAAA----CT----C----C----TA----ACTATTGACCC-A-A-------TTTTTTTACA-------GCACGTCAC-AGGAAACAAA-----AA-T--ATTTTTTCATc
gi|9 : AGGTCAAATGA-ATAAATA-GTTTAG----TTTTCTG-----TGA-CCCAAC----CGA----GTCAATAATGT----------A-A---------CCCCCC--CCCC--C----CAG------------------TGTTACTGATGTTTTT-----TTCT----------------------------TTCG-TCTTTCAA-TCTA--TTTCGATCCATAAACCA-TG-GAG--GA-AAA--AAAAAAAGA---------------------A----------------A-A-----------TTTCTA-------GTATGTCAT-A------AAATTTTTTA-T--TTTTTTTTATTTGGC
blockSeqs : . T . TCAAC G CTGATTGA A TAATTCCACTTCAACCCTCACCTTTAAGTCAAAAATGTTTATTGATTTTTTTTTTAAATGTTTTTT G TACT . C A GTGA . TTCCTT CCAT CACT TCTA TACT A T AAAAAAG CCCT . G TTTTTT TAC
blockSeqs : . . . . . CCGATCAT . TTACAACCCACTTCCAGAGTCAAAAATCTTTTATTGATTTTTTTTTTAATTATTTTTTAT . CAC . . . GGG . TCCCTA . . . TATT . . T TCA . T A T
blockSeqs : . . . . . CAGACTGA . TAACCCCCTCCCCATAATTTTATTGATTTTTTATGTGTTTTTTTTTTTTTAATTTTT . CTC . . . AC . TTCCCA . . . TAT . . . CCA . G A T
blockSeqs : . . . . . CCGATCGC . AACTCAAAGTAAAAAAAAAAATATTGATTTTTTTTTCTTTTAATTCTTTTTTA . CAC . . . GA . CTA . . . . . . . CCA . G T T
blockSeqs : . . . . . CCGACCCA . TAACCCAATAGTCGAAAAGTTTTTGTTTATTTTATTTTTAAAGTTTAA . CAC . . . AA . TC . . . . . . . CAG . G A T
blockSeqs : . . . . . CCAACCGA . TAACCCCCGAATCAAATTTTTTTTTAAAAAAAAATTATTGATTTAT . CGC . . . GA . TT . . . . . . . TCA . G A T
blockSeqs : . . . . . TGACTGA . TAATCCCAGTATCAAAATATTCTTTTCTTAATTTTCATTTTTTT . TGT . . . GA . TT . . . . . . . ACA . G C T
blockSeqs : . . . . . CGACCAA . TTACCTCCGAGTCAATAGATTTTTATTGACATTTTGTTT . CAA . . . GA . TT . . . . . . . ACA . G A T
blockSeqs : . . . . . CTGA . AACCCCCCCCCCCCAGTGTTACTGATGTTTTTTTCTT . GC . . . . . TT . . . . . . . CTA . G C T
blockSeqs : . . . . . CTGA . . . . . . . . CT . . . . . . . CC . G T T
blockSeqs : . . . . . CAG . . . . CT . . . . . . . GG . G A T
blockSeqs : . . . . . . . . . . . . CA . . T T
blockSeqs : . . . . . . . A .
blockSeqs : . . A .
blockSeqs : .
blockSeqCons : **** CGC* ** GA*** ** TT******** ******* CCA******* T***
originalCons : AGGCCAAATGA-AAAAATA-GTTTTG----TTTCCTG-----TGA-C----C----CGA----GTCAAT-ATTT----------T-A---------CAACCC--ACCC--C----CAGAGT-----C-AA-AAAT-TTTTATTGAT-TTTTT-----TTTT-------AATT---ATTT-TTTA-----TTTG-TCTTTCGC-TCCA--TTTCGATCCATGAACCA-TG-GAG--GA-AAA--AAAAAGAAA----TT----C----C----TA----CC----GACCC-A-A-------TTTTTTTCCA-------GCATGTCAC-AGGAAACAAA-----NA-T--ATTTTTTCATTTGGCTT
finalCons : AGGCCAAATGA-AAAAATA-GTTTTG----TTTCCTG-----TGA-C----C----CGA----GTCAAT-ATTT----------T-A---------CAACCC--ACCC--C----CAGAGT-----C-AA-AAAT-TTTTATTGAT-TTTTT-----TTTT-------AATT---ATTT-TTTA-----TTTG-TCTTTCGC-TCCA--TTTCGATCCATGAACCA-TG-GAGGA---AAA--AAAAAGAAATT--------C----C----TA----CC----GACCC-A-A-------TTTTTTTCCA-------GCATGTCAC-AGGAAACAAA-----NAT---ATTTTTTCATTTGGCTT
Alignments
lowQualScore : 3333333333333333 88888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888 11111 2222222222 1111 1111111 1111111111
lowQualScore : 3 3 7777 88888 3 7777777777777777 3 55555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555 3 8888 55 3 6 77777 33 2222222222 6666 6666 6666 8888 2 2 5555555 4444444444 0 2 1 777777 3333
lowQualScore : . . .... ..... . ................ . .................................................................................................................... . .... .. . . ..... .. .......... .... .... .... .... . . ....... .......... . . . ...... ....
lowQualScore : 3 3 1111 33333 3 8888888888888888 6 33333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333 6 0000 00 1 2 77777 99 6666666666 5555 5555 5555 5555 9 9 0000000 6666666666 9 5 7 777777 9999
consensus : AGGCCAAATGA-AAAAATA-GTTTTG----TTTCCTG-----TGA-C----C----CGA----GTCAAT-ATTT----------T-A---------CAACCC--ACCC--C----CAGAGT-----C-AA-AAAT-TTTTATTGAT-TTTTT-----TTTT-------AATT---ATTT-TTTA-----TTTG-TCTTTCGC-TCCA--TTTCGATCCATGAACCA-TG-GAG--GA-AAA--AAAAAGAAA----TT----C----C----TA----CC----GACCC-A-A-------TTTTTTTCCA-------GCATGTCAC-AGGAAACAAA-----NA-T--ATTTTTTCATTTGGCTT
Reference ( family-2562 ) : AGGCCAAATGA-AAAAATA-GTTTTG----TTTCCTG-----TGA-C----C----CGA----GTCAAT-ATTT----------T-A---------CAACCC--ACCC--C----CAGAGT-----C-AA-AAAT-TTTTATTGAT-TTTTT-----TTTT-------AATT---ATTT-TTTA-----TTTG-TCTTTCGC-TCCA--TTTCGATCCATGAACCA-TG-GAG--GA-AAA--AAAAAGAAA----TT----C----C----TA----CC----GACCC-A-A-------TTTTTTTCCA-------GCATGTCAC-AGGAAACAAA-----NA-T--ATTTTTTCATTTGGCTT
gi|1 : AGGCCAAATGATAAAACTA-GTTTTGTTTGTTTCCTG-----TGA-CTTGAC----TGA----GTCAAT-ATTTACCCCCAACCT-C---------CAACCCCGACCCAACACCGCAAAGT-----C--A-GAAT-TTTT-----T-TTTTT-----TTTT---------------TTT-TTTAAAT--TTTG-TCTT--------AATTTTTGA------AACCA-TGAGAGA-GA-AGAGTAAAAAAAAA----TCCTA-C----C----TA----CC----GACCC-G-AT------TTTTTTTTCATATATTTATATATAACTATGAAATAAA-----TAGT--ATTTT
gi|10 : taAGGCCAAGTGA-AAAAATA-GTTTTG----TTTCTTG-----TGAGCTGA-C----TGA----GTCAAT-ATTT-----------------------AA--------C--T----CAAAGTAAAAAA-AA-AAAT-ATTGATTTTT-TTTTC-----TTTT-------AATT---CTTT-TTTA--------G-TCATT-GC-TCCA--TTTCAATCCGTG--TCACTG-GAA--AC-AAA--AAgtactgagttcacctgattacaa
gi|10 : tCGTGTCAC-TGGAAACAAA-----AA-T--A-TTGTTCATTTGACCTtattgttcatttgaccttatttggttggcggatat
gi|11 : taggccaagtgaaaaaatagttttgtttcttgtgagctgactgagtcaatatttaactcaaagtaaaaaaaaaaatattgatttttttttcttttaattcttttttagtcattgctccatttcaatc-----C-AA-AAATATTTTATTGAA-TTT-------------------------ATTT-TTT---------G-TTTTTCAC-TCCA--TTTCAATCCATGAAGCA-AA-GA---GA-AAA--AAAAAGAAATTCCTT----C----C----TA----CT----GACCA-A-AAAAAAAGTTT---------------CATGTCAC-CTGAAACAAA-----AA-T--ATTTTTTCATTTTGCTtatttggttggcggatat
gi|12 : ATGCCAC-AGGAAACAAA-----TA----ATTTTTTCATTTGGCTT
gi|13 : gaTGAACCA-TGAGAG--AA-AAC--AAAAAGAAA----TC----C----C----TATCTACC----GACCA-A-A-------TTTTTCCCCCT------GCATGTCAC-AGGAAACAAA-----AA-T--ATTTTTTCATTTGGCtattcagctggcaggttattggtcaccaatcagagcattattttgtttgccttgaatctacagtgatatcacatcaccttcttcttctg
gi|14 : agtttgtttttgtatttttttaaaaacttttTCGATCCATGTACCA-GG-GAG--GA-AAA--AAAAA--------TT----C----CCACTTA----CT----AACCC-A-A-------TTTTTTTCC---------------------AAACAAA-----AA-TACATTTTTTCATTTGGC
gi|15 : AA--AAAAAAAAA----TCCCTAC----C----TA----CC----GACCC-ATA-------TTTTTTT-GG-------GCATGTAAC-AGGAAACAAA-----CC-T---TTTTTc
gi|16 : AGGCCAAATTA-AAACATA-GTTTTG----TTTCCTG-----TGA-C----CTGATTGA----GTCAAT-GTTT----------T-----------TA--------CC--C----CAGAGT-----agg
gi|17 : ttC-A-A-------TTTTTTTC-A-------ATATGTCAT-AGGAAGCAAA-----AA-T--ATTTTTTCAATTGG
gi|18 : AGGCCAAATGA-AAAGCTT-GTTTTG----TTTCCTG-----TAG-T----C----TGA----
gi|2 : cAGGCCAAATGA-AAAAATA-GTTTTG----TTCCCTG-----TGA-C----C----CGATCATGTCAAT-ATTT----------T------------AACCC--A-----------ATAGT-----CGAA-AAGT-TTTTGTTTAT-TTTAT-----TTTT-------AA-----A--G-TTTA-----ATTG-TCTTTCTC-TCCA--TTTCAATTCAAGAACCA-TG-G---------T--AAAATGAAA----TT----C----C----TA----CCTAT-GACCCAA-A-------TTTTATTTCA-------ATAT-TCAT-Accg
gi|3 : tgataAGGCCAAATGA-AAAAGAA-GTTCTG----TTTCCTG-----TGA-C----CAGACTGA----GTCAAT-ATTT----------T-AATTCCACTTCAACCCTCACCT--T----TA-AGT-----C-AA-AAAT-GTTTATTGAT-TTTTT-----TTTT-------AAAT---GTTT-TTT-------TTG-TCTTTCAC-TCCT--TTTCGATCCATGAACCA-TG-GAG-----------AAAAAAAA----TT----C----C----TA----CCTACTGGCCC-A-A-------TTTTTTTCCA-------ACATGTTGC-AGGAAAC--------CA-T--ATTTTTTTATTTGGattgtgtacctgtacttacttaaatactgtattttctgttaattattacactgattaaa
gi|4 : AGGCCAAATGA-AAA--TA-GTTTTG----TTTCCTG-----TGA-C----C----TGA----GTCAAT-ATTT----------TTA---------CAACCC--ACTT--C----CAGAGT-----C-AA-AAATCTTTTATTGAT-TTTTT-----TTTT-------AATT---ATTT-TTTA-----TTTGGTCTTCCAC-TCCA--TTTCGATCCATGAATCA-TG-GAG--GGGAAA--AAAAAGAAA----TT----C----C----TA----CC----GACCC-A-A-------CAATTTTCCA-------GAATGCCAC-AGGAAACAAA-----TA----ATTTTTTCATTTGGCTT
gi|5 : AGGCCAAATGA-AAAAATA-GTTTTG----TTTCCTG-----TGA-C----C----CGATCGCGTTGAT-ATTT----------T------------AACCC--CCTC--C----C----------C-AT-AA---TTTTATTGAT-TTTTTATGTGTTTT---------TT---TTTT-TTTAATTTTTTTT-TTTTTTACTTCCA--TTTTGATCTATGCAACA-TA-TAG------AA--AAAAAGGAC----CT----CCCATC----TA----CC----AACCC-A-A-------TTTTTATCAG-------GCATGTCAC-AGGAAACAAA-----AA-T--A-TTTTTCAT
gi|6 : gCCATATGA-AAAAATTTGTTGTG----TTTCCTG-----TGA-C----C----CGACCCAGTAAAT-ATTT----------T-A-----------------ATCC--C-----AGTAT-----C-AA-AA---------T-AT-TCTTT-----TCTT-------AATTTTCATTT-TTT------TTTG-TCTTTCGC-CCCA--TTTTGCTCTTTGAACAA-T---AG--GA-GAA--AAAAAATAC----CTA---C----C----TA----CC----AACCC-A-AT------TTTTTTTTCA-------GCATGTCAC-A-GAAAT--------TT-T--TTTTTTTCATTTGGCTTacg
gi|7 : aAGGCCAAATAA-AAAAATA-TTTTTG----TTTTCTGTCAACTGA-C----C----AG-----GTCAAT-ATTT----------T-A-----------------ACCC--C----C-GAAT-----C-AA-A---------------TTTTT-----TTTTAAAAAAAAATT---ATTGATTTA-----TTT--TTTTTTGT-TCCA--TTGTGACCAATGAACCA-TG-GAGGTGA-AAA--AAAATGTTA----TTCCCAC----C----TA----CC----GACCC-A-A---------TTTTTACA-------G---------AGGAAACAAA-----AA-T--ATTTTCTCATTTGGCta
gi|8 : GGCTTAATGA-AAAAATA-GTTTTG----TTTCCTG-----TGA-C----CGAC-CAA----GTCAAT-ATTT----------T----------------T--ACCT--C----C-GAGT-----C-AATAGAT-TTTTATTGAC-ATTTT-----GTTT-----------------------------TTG-T-----------A--TATGGATCCATGAACCA-TG-GAG-------A--AAAAAGAAA----CT----C----C----TA----ACTATTGACCC-A-A-------TTTTTTTACA-------GCACGTCAC-AGGAAACAAA-----AA-T--ATTTTTTCATc
gi|9 : AGGTCAAATGA-ATAAATA-GTTTAG----TTTTCTG-----TGA-CCCAAC----CGA----GTCAATAATGT----------A-A---------CCCCCC--CCCC--C----CAG------------------TGTTACTGATGTTTTT-----TTCT----------------------------TTCG-TCTTTCAA-TCTA--TTTCGATCCATAAACCA-TG-GAG--GA-AAA--AAAAAAAGA---------------------A----------------A-A-----------TTTCTA-------GTATGTCAT-A------AAATTTTTTA-T--TTTTTTTTATTTGGC