lowQualScore : 22 111 1 1 1
lowQualScore : 4 3 3 00 444 2 444 1 99999999 0 0 3 55555 2 1 0 0
lowQualScore : . . . .. ... . ... . ........ . . . ..... . . . .
lowQualScore : 1 6 5 33 666 5 444 7 88888888 1 4 0 99999 1 7 7 8
consensus : TTTTTCC-CGTAGAAAGGAAGGGATGTGTCTATCCATGCTGAGATTTTT--AAGAACAACTT-CCA---TTT------T-CTCTTCCGCCATGTTCAATATTCTTTCTCTCAAAGAAGCTTG-----TTGTTTAAAGCGGTGTCAGTATANAAAT-CACCCCGTCAAAATGATCTCGTCATCATAAGGAA
Reference ( gi|1 ) : TTTTTTC-CGTAGAAAGGAAAGGATGTGTCTATCCTCGCTGAGATTTTA--AAGAACAACTT-CCA---TTT------T-CTCTTCCGCCATGTTCAATATTCTTTCTCTCAAAGAAGCTGG-----TTGTTTAAAGCGGTGTCAATATAGAAAT-CACCCAGTCAAACTGATCTCGTCATCATAAGGAA
gi|2 : TTTTTCC-CGTTGAAAGGAAGGGACGTGTCTATCCACTCTGAGATTTTA--GAGAACAACTT-TCA---TTT------T-CTCTTCCGTCATGTGTAATATTCTTCCTGTCAAAGAAGCTTG-----TTGTTTAAAGCGGTGTCAATATAGAAAT-CACCCAGTCAAACTGATCTCGTCATCATAA
gi|4 : TTTTCC-CGTAGAAAGGAAAGGATGTGTCTATCCACGCTGAGATTTTA--AAAAACAACTT-CCA---TTT------T-CTCTTCCGCCATTTTCAATATTGTTTCTCTCAAAGAAACTTG-----TTGTTTAAAGCGGTGTCAATATAGAAAT-CACCTAATCAAACTGATCTCGTCA
gi|11 : TTTTCC-CGTAGAAAGGAAGGGGTGTGTCTATCCATGCTGAGATTTTT--AAGAACAACTT-CCA---TTT------T-CTCTTCCGCCATGTTCAGTATTCTTTCTCTCAAAGAAACTTG-----TTGTTTAAAGCggaag
gi|7 : TTTTCC-CGTATAAAGGAAGAGATGTATCTATCCATGCTGAGA---------------CTT-CCA---TTT--------------------GTTCAATGTTCTTTCTCTCAAAGAAGCTTG-----TTGTTTAAAGCGTTGTCGATATAGAAAT-CACGACGTCAAAATGATCTCGTCATCATAAGc
gi|3 : TTTCC-CGTAGAAAGGAAATGATGTGTCTATCCATGCTGAGATTTTT--AATAACAACTT-CCA---TTT------TTCTCTTCCACCATGTTATATATTCTTTCTCTCAAAGAAGCTTG-----TTGTTTAAAGCGGTGTCAATATAGAAAT-CACCCCGTCAAAATGATCTCGTCATCATAA
gi|12 : TTTCC-CGTAGAAAGGAAGGGATGTGTCTATCCATGCTGAGATTTTT--AAGAACAACTT-CGA---TTT------T-CTCTTCCGCCATGTTCAATATTCTTTCTCTCAAAGAAACTTG-----TTGTTTAAAGC
gi|13 : TTCC-CGTAGAAAGGAAGGGGTGTGTCTATCCATGCTGAGATTTTT--AAGAACAACTT-CCA---TTT------T-CTCTTCCGCCATGTTCAGTATTCTTTCTCTCAAAGAAACTTG-----TTGTTTAAAGCc
gi|14 : TTCGCGTAGAAAGGAAGGGATGTGTCTATCCATGCTGAGATTTTT--AAGAACAACTT-CCA---TTT------T-CTCTTCTGCCATGTTCAATAGTCTTTCTCTCAAAGAAACTTG-----TTGTTTAAAGCc
gi|5 : C-CGTAGAAAGGAAGGAATGTGTCTATCCATGCTCAGATTTTT--AAGAACAACTT-CCA---T-------------------CATGTCCAATATTCTTTATCTCAAAGAAG-TAG-----TTGTTTAAAGCGGTGTCAATATAGTAAT-CACCCCGTCAAAACGATCTCGTCATCATAAGGAAc
gi|18 : tctaC-CGTAGAAAGGAAGGGATGTGT-TATCCATGCTGAGATTTTGCTGAGAAAAACTT-CCA---TTT------T-CTCTTCCGCCATGTTCAATATTCTTTCT
gi|6 : tcta-CGTAGAAAGGAAGGGATGTGTCTATCCATGCTGAGATTTTT--AAGAACAACTT-CCA---T-------------------CATGTTCTATATTCTTTTTCTCAAAGAAGCGTG-----TTGTTTAAAGCAGTGTCAATATAGAAAT-CATCCCGTCAAAATGATCTCGTCATCATA
gi|17 : atGTAGAAAGGAAGGGATGTGTCTATCCATGCTGAGATTTTT--AAGAACAACTT-CCA--------------------------GTTCAATATTCTTTCTCTCAAAGAAACTTG-----TTGTTTAAAGC
gi|8 : GCTGAGATTTTT--AAGAACAACTT-CCA---TTT------T-CTCTTCCGCCATGTTCAATATTCTTTCTCTCAAATAAGCTTG-----TTGTTAAAACTTGTGTCAATATAGAAAT-CACCCCGTCAGAATGATCTCGTCATCATCAGGA
gi|10 : tCTGATATTTTT--AAGAACAACTT-CCA---T-------------------CATGTTCAATATTCTTTCTCTCAAAGAAGCTTG-----TTGTTAAAACCGGTGTCAATATAGAAAT-CACCCCGTCAAAATGATCTCGTCATCATAA
gi|9 : caccTTA--AAGATAAACTTACCAAAATTTGTCTGAT-TTCATCCGACATTTTGAATATT-----TCCCGGTGAA--TGGACACATTAT--AAAGCGGTG-CAACCTCAAAATTCTCCTGGTCACAATGATCTCGTCATCATTAG
gi|15 : T-CCA---TTT------T-CTCTTCCGCCACGTTCAATATTCTTTCTGTCAAAGAAGCTTG-----TTGTTTAAAGCGGTGTCGATATAGAAAT-CACCCAGTCAAACTGATCTCGTCATCATAAGGAA
gi|19 : ATTCTTTCTCTCAAAGAAGCTTG-----TTGTTTAAACCGGTGTCAATATAGAAAT-CACCCCATCAAAATGATCTCGTCATCATAA
gi|16 : CTATCAAAGAAGCTTG-----TTGTTTAAAGCGGTGTCAATATAGAAAA-CATCACGTCAAAATGATCTCGTCATCATA
gi|21 : tttgttgaactttgttgttggatgaCGGTGTCAGTATATAAAT-CACCCCGTCAAAATGATCTCGTCATCATAAGGAA
gi|20 : CGGTGTCAGTATATAAAT-CACCCTGTCAAAATGATCTCGTCATCATAAGGAA
gi|27 : CGGTGTCAGTATATAAAT-CACCCCATCAAAATGATCTCGTCATCATGA
gi|25 : CGGTGTCGGTATATAAAT-CACCCCGTCAAAATGATCTCGTCATC
gi|24 : gacaCGGTGTCGGTATATAAAT-CACCCCGTCAAAATGATCTCGTCATC
gi|23 : ttgacaGGTGTCAGTATATAAAT-CACCCCGTCAAAATGATCTCGTCATCATAAGGAA
gi|22 : GGTGTCAGTATATAAAT-CACCCCGTCAAAATGATCTCGTCATCATAAGGAA
gi|28 : GGTGTCAGTATATAAAT-CACCCCGTCAAAATGATCTCGTCATCATAA
gi|26 : GGTGTCAGTATATAAAT-CACCCCGTCAAAATGATATTGTCATCATAAG
gi|29 : GGTGTCAGTATATAAAT-CACCCCGTCAAAATGATCTCGTCA
gi|31 : GGTGTCAGTATATAAAT-CACCCCGTCAAAATGATATTGTCATactta
gi|30 : ATATAGAAAT-CACCCAGTCAAACTGATCTCGTCATAATAAGGAA
Alignments
lowQualScore : 33 1 2 33 1 1
lowQualScore : .. . . .. . .
lowQualScore : 77 7 4 11 0 6
consensus : TTTTTCCCGTAGAAAGGAAGGGATGTGTCTATCCATGCTGAGATTTT--TAAGAACAACTTCCATTTT-CTCTTCCGCCATGTTCAATATTCTTTCTC--TCAAAGAAGCTTGTTGTTTAAAGCGGTGTCAGTATAGAAAT-CACCCCGTCAAAATGATCTCGTCATCATAAGGAA
Reference ( family-2509 ) : TTTTTCCCGTAGAAAGGAAGGGATGTGTCTATCCATGCTGAGATTTT--TAAGAACAACTTCCATTTT-CTCTTCCGCCATGTTCAATATTCTTTCTC--TCAAAGAAGCTTGTTGTTTAAAGCGGTGTCAGTATANAAAT-CACCCCGTCAAAATGATCTCGTCATCATAAGGAA
gi|1 : TTTTTTCCGTAGAAAGGAAAGGATGTGTCTATCCTCGCTGAGATTTT--AAAGAACAACTTCCATTTT-CTCTTCCGCCATGTTCAATATTCTTTCTC--TCAAAGAAGCTGGTTGTTTAAAGCGGTGTCAATATAGAAAT-CACCCAGTCAAACTGATCTCGTCATCATAAGGAA
gi|10 : CTGATATTTT--TAAGAACAACTTCCAT-------------CATGTTCAATATTCTTTCTC--TCAAAGAAGCTTGTTGTTAAAACCGGTGTCAATATAGAAAT-CACCCCGTCAAAATGATCTCGTCATCATAA
gi|11 : caccTTTTCCCGTAGAAAGGAAGGGGTGTGTCTATCCATGCTGAGATTTT--TAAGAACAACTTCCATTTT-CTCTTCCGCCATGTTCAGTATTCTTTCTC--TCAAAGAAACTTGTTGTTTAAAGC
gi|12 : TTTCCCGTAGAAAGGAAGGGATGTGTCTATCCATGCTGAGATTTT--TAAGAACAACTTCGATTTT-CTCTTCCGCCATGTTCAATATTCTTTCTC--TCAAAGAAACTTGTTGTTTAAAGCc
gi|13 : TTCCCGTAGAAAGGAAGGGGTGTGTCTATCCATGCTGAGATTTT--TAAGAACAACTTCCATTTT-CTCTTCCGCCATGTTCAGTATTCTTTCTC--TCAAAGAAACTTGTTGTTTAAAGCc
gi|14 : TTCGCGTAGAAAGGAAGGGATGTGTCTATCCATGCTGAGATTTT--TAAGAACAACTTCCATTTT-CTCTTCTGCCATGTTCAATAGTCTTTCTC--TCAAAGAAACTTGTTGTTTAAAGCc
gi|15 : TCCATTTT-CTCTTCCGCCACGTTCAATATTCTTTCTG--TCAAAGAAGCTTGTTGTTTAAAGCGGTGTCGATATAGAAAT-CACCCAGTCAAACTGATCTCGTCATCATAAGGAAc
gi|16 : CTA--TCAAAGAAGCTTGTTGTTTAAAGCGGTGTCAATATAGAAAA-CATCACGTCAAAATGATCTCGTCATCATA
gi|17 : tttgttgaactttgttgttggatgaGTAGAAAGGAAGGGATGTGTCTATCCATGCTGAGATTTT--TAAGAACAACTTCCA-----------------GTTCAATATTCTTTCTC--TCAAAGAAACTTGTTGTTTAAAGC
gi|18 : CCGTAGAAAGGAAGGGATGTGT-TATCCATGCTGAGATTTTGCTGAGAAAAACTTCCATTTT-CTCTTCCGCCATGTTCAATATTCTTTCT
gi|19 : tctaATTCTTTCTC--TCAAAGAAGCTTGTTGTTTAAACCGGTGTCAATATAGAAAT-CACCCCATCAAAATGATCTCGTCATCATAA
gi|2 : TTTTTCCCGTTGAAAGGAAGGGACGTGTCTATCCACTCTGAGATTTT--AGAGAACAACTTTCATTTT-CTCTTCCGTCATGTGTAATATTCTTCCTG--TCAAAGAAGCTTGTTGTTTAAAGCGGTGTCAATATAGAAAT-CACCCAGTCAAACTGATCTCGTCATCATAA
gi|20 : CGGTGTCAGTATATAAAT-CACCCTGTCAAAATGATCTCGTCATCATAAGGAA
gi|21 : CGGTGTCAGTATATAAAT-CACCCCGTCAAAATGATCTCGTCATCATAAGGAA
gi|22 : GGTGTCAGTATATAAAT-CACCCCGTCAAAATGATCTCGTCATCATAAGGAA
gi|23 : GGTGTCAGTATATAAAT-CACCCCGTCAAAATGATCTCGTCATCATAAGGAA
gi|24 : CGGTGTCGGTATATAAAT-CACCCCGTCAAAATGATCTCGTCATC
gi|25 : ttgacaCGGTGTCGGTATATAAAT-CACCCCGTCAAAATGATCTCGTCATC
gi|26 : gacaGGTGTCAGTATATAAAT-CACCCCGTCAAAATGATATTGTCATCATAAG
gi|27 : CGGTGTCAGTATATAAAT-CACCCCATCAAAATGATCTCGTCATCATGA
gi|28 : GGTGTCAGTATATAAAT-CACCCCGTCAAAATGATCTCGTCATCATAA
gi|29 : GGTGTCAGTATATAAAT-CACCCCGTCAAAATGATCTCGTCA
gi|3 : TTTCCCGTAGAAAGGAAATGATGTGTCTATCCATGCTGAGATTTT--TAATAACAACTTCCATTTTTCTCTTCCACCATGTTATATATTCTTTCTC--TCAAAGAAGCTTGTTGTTTAAAGCGGTGTCAATATAGAAAT-CACCCCGTCAAAATGATCTCGTCATCATAAactta
gi|30 : TATAGAAAT-CACCCAGTCAAACTGATCTCGTCATAATAAGGAA
gi|31 : aGGTGTCAGTATATAAAT-CACCCCGTCAAAATGATATTGTCAT
gi|4 : TTTTCCCGTAGAAAGGAAAGGATGTGTCTATCCACGCTGAGATTTT--AAAAAACAACTTCCATTTT-CTCTTCCGCCATTTTCAATATTGTTTCTC--TCAAAGAAACTTGTTGTTTAAAGCGGTGTCAATATAGAAAT-CACCTAATCAAACTGATCTCGTCA
gi|5 : CCGTAGAAAGGAAGGAATGTGTCTATCCATGCTCAGATTTT--TAAGAACAACTTCCAT-------------CATGTCCAATATTCTTTATC--TCAAAGAAG-TAGTTGTTTAAAGCGGTGTCAATATAGTAAT-CACCCCGTCAAAACGATCTCGTCATCATAAGGAAggaag
gi|6 : tctaCGTAGAAAGGAAGGGATGTGTCTATCCATGCTGAGATTTT--TAAGAACAACTTCCAT-------------CATGTTCTATATTCTTTTTC--TCAAAGAAGCGTGTTGTTTAAAGCAGTGTCAATATAGAAAT-CATCCCGTCAAAATGATCTCGTCATCATA
gi|7 : atTTTTCCCGTATAAAGGAAGAGATGTATCTATCCATGCTGAGA---------------CTTCCATTT--------------GTTCAATGTTCTTTCTC--TCAAAGAAGCTTGTTGTTTAAAGCGTTGTCGATATAGAAAT-CACGACGTCAAAATGATCTCGTCATCATAAG
gi|8 : TGCTGAGATTTT--TAAGAACAACTTCCATTTT-CTCTTCCGCCATGTTCAATATTCTTTCTC--TCAAATAAGCTTGTTGTTAAAACTTGTGTCAATATAGAAAT-CACCCCGTCAGAATGATCTCGTCATCATCAGGA
gi|9 : T-TTCATCCGACATTTTGAATATT---TCCCGGTGAATGGA-CACATTAT--AAAGCGGTG-CAACCTCAAAATTCTCCTGGTCACAATGATCTCGTCATCATTAG
Alignments
lowQualScore : 33 1 2 33 1 1
lowQualScore : .. . . .. . .
lowQualScore : 77 7 4 11 6 6
consensus : TTTTTCCCGTAGAAAGGAAGGGATGTGTCTATCCATGCTGAGATTTT--TAAGAACAACTTCCATTTT-CTCTTCCGCCATGTTCAATATTCTTTCTC--TCAAAGAAGCTTGTTGTTTAAAGCGGTGTCAGTATAGAAAT-CACCCCGTCAAAATGATCTCGTCATCATAAGGAA
Reference ( family-2509 ) : TTTTTCCCGTAGAAAGGAAGGGATGTGTCTATCCATGCTGAGATTTT--TAAGAACAACTTCCATTTT-CTCTTCCGCCATGTTCAATATTCTTTCTC--TCAAAGAAGCTTGTTGTTTAAAGCGGTGTCAGTATAGAAAT-CACCCCGTCAAAATGATCTCGTCATCATAAGGAA
gi|1 : TTTTTTCCGTAGAAAGGAAAGGATGTGTCTATCCTCGCTGAGATTTT--AAAGAACAACTTCCATTTT-CTCTTCCGCCATGTTCAATATTCTTTCTC--TCAAAGAAGCTGGTTGTTTAAAGCGGTGTCAATATAGAAAT-CACCCAGTCAAACTGATCTCGTCATCATAAGGAA
gi|10 : CTGATATTTT--TAAGAACAACTTCCAT-------------CATGTTCAATATTCTTTCTC--TCAAAGAAGCTTGTTGTTAAAACCGGTGTCAATATAGAAAT-CACCCCGTCAAAATGATCTCGTCATCATAA
gi|11 : caccTTTTCCCGTAGAAAGGAAGGGGTGTGTCTATCCATGCTGAGATTTT--TAAGAACAACTTCCATTTT-CTCTTCCGCCATGTTCAGTATTCTTTCTC--TCAAAGAAACTTGTTGTTTAAAGC
gi|12 : TTTCCCGTAGAAAGGAAGGGATGTGTCTATCCATGCTGAGATTTT--TAAGAACAACTTCGATTTT-CTCTTCCGCCATGTTCAATATTCTTTCTC--TCAAAGAAACTTGTTGTTTAAAGCc
gi|13 : TTCCCGTAGAAAGGAAGGGGTGTGTCTATCCATGCTGAGATTTT--TAAGAACAACTTCCATTTT-CTCTTCCGCCATGTTCAGTATTCTTTCTC--TCAAAGAAACTTGTTGTTTAAAGCc
gi|14 : TTCGCGTAGAAAGGAAGGGATGTGTCTATCCATGCTGAGATTTT--TAAGAACAACTTCCATTTT-CTCTTCTGCCATGTTCAATAGTCTTTCTC--TCAAAGAAACTTGTTGTTTAAAGCc
gi|15 : TCCATTTT-CTCTTCCGCCACGTTCAATATTCTTTCTG--TCAAAGAAGCTTGTTGTTTAAAGCGGTGTCGATATAGAAAT-CACCCAGTCAAACTGATCTCGTCATCATAAGGAAc
gi|16 : CTA--TCAAAGAAGCTTGTTGTTTAAAGCGGTGTCAATATAGAAAA-CATCACGTCAAAATGATCTCGTCATCATA
gi|17 : tttgttgaactttgttgttggatgaGTAGAAAGGAAGGGATGTGTCTATCCATGCTGAGATTTT--TAAGAACAACTTCCA-----------------GTTCAATATTCTTTCTC--TCAAAGAAACTTGTTGTTTAAAGC
gi|18 : CCGTAGAAAGGAAGGGATGTGT-TATCCATGCTGAGATTTTGCTGAGAAAAACTTCCATTTT-CTCTTCCGCCATGTTCAATATTCTTTCT
gi|19 : tctaATTCTTTCTC--TCAAAGAAGCTTGTTGTTTAAACCGGTGTCAATATAGAAAT-CACCCCATCAAAATGATCTCGTCATCATAA
gi|2 : TTTTTCCCGTTGAAAGGAAGGGACGTGTCTATCCACTCTGAGATTTT--AGAGAACAACTTTCATTTT-CTCTTCCGTCATGTGTAATATTCTTCCTG--TCAAAGAAGCTTGTTGTTTAAAGCGGTGTCAATATAGAAAT-CACCCAGTCAAACTGATCTCGTCATCATAA
gi|20 : CGGTGTCAGTATATAAAT-CACCCTGTCAAAATGATCTCGTCATCATAAGGAA
gi|21 : CGGTGTCAGTATATAAAT-CACCCCGTCAAAATGATCTCGTCATCATAAGGAA
gi|22 : GGTGTCAGTATATAAAT-CACCCCGTCAAAATGATCTCGTCATCATAAGGAA
gi|23 : GGTGTCAGTATATAAAT-CACCCCGTCAAAATGATCTCGTCATCATAAGGAA
gi|24 : CGGTGTCGGTATATAAAT-CACCCCGTCAAAATGATCTCGTCATC
gi|25 : ttgacaCGGTGTCGGTATATAAAT-CACCCCGTCAAAATGATCTCGTCATC
gi|26 : gacaGGTGTCAGTATATAAAT-CACCCCGTCAAAATGATATTGTCATCATAAG
gi|27 : CGGTGTCAGTATATAAAT-CACCCCATCAAAATGATCTCGTCATCATGA
gi|28 : GGTGTCAGTATATAAAT-CACCCCGTCAAAATGATCTCGTCATCATAA
gi|29 : GGTGTCAGTATATAAAT-CACCCCGTCAAAATGATCTCGTCA
gi|3 : TTTCCCGTAGAAAGGAAATGATGTGTCTATCCATGCTGAGATTTT--TAATAACAACTTCCATTTTTCTCTTCCACCATGTTATATATTCTTTCTC--TCAAAGAAGCTTGTTGTTTAAAGCGGTGTCAATATAGAAAT-CACCCCGTCAAAATGATCTCGTCATCATAAactta
gi|30 : TATAGAAAT-CACCCAGTCAAACTGATCTCGTCATAATAAGGAA
gi|31 : aGGTGTCAGTATATAAAT-CACCCCGTCAAAATGATATTGTCAT
gi|4 : TTTTCCCGTAGAAAGGAAAGGATGTGTCTATCCACGCTGAGATTTT--AAAAAACAACTTCCATTTT-CTCTTCCGCCATTTTCAATATTGTTTCTC--TCAAAGAAACTTGTTGTTTAAAGCGGTGTCAATATAGAAAT-CACCTAATCAAACTGATCTCGTCA
gi|5 : CCGTAGAAAGGAAGGAATGTGTCTATCCATGCTCAGATTTT--TAAGAACAACTTCCAT-------------CATGTCCAATATTCTTTATC--TCAAAGAAG-TAGTTGTTTAAAGCGGTGTCAATATAGTAAT-CACCCCGTCAAAACGATCTCGTCATCATAAGGAAggaag
gi|6 : tctaCGTAGAAAGGAAGGGATGTGTCTATCCATGCTGAGATTTT--TAAGAACAACTTCCAT-------------CATGTTCTATATTCTTTTTC--TCAAAGAAGCGTGTTGTTTAAAGCAGTGTCAATATAGAAAT-CATCCCGTCAAAATGATCTCGTCATCATA
gi|7 : atTTTTCCCGTATAAAGGAAGAGATGTATCTATCCATGCTGAGA---------------CTTCCATTT--------------GTTCAATGTTCTTTCTC--TCAAAGAAGCTTGTTGTTTAAAGCGTTGTCGATATAGAAAT-CACGACGTCAAAATGATCTCGTCATCATAAG
gi|8 : TGCTGAGATTTT--TAAGAACAACTTCCATTTT-CTCTTCCGCCATGTTCAATATTCTTTCTC--TCAAATAAGCTTGTTGTTAAAACTTGTGTCAATATAGAAAT-CACCCCGTCAGAATGATCTCGTCATCATCAGGA
gi|9 : T-TTCATCCGACATTTTGAATATT---TCCCGGTGAATGGA-CACATTAT--AAAGCGGTG-CAACCTCAAAATTCTCCTGGTCACAATGATCTCGTCATCATTAG
blockSeqs : GC T T GG G T
blockSeqs : . T . . G .
blockSeqs : . T . . G .
blockSeqs : . T . . G .
blockSeqs : . T . . G .
blockSeqs : . T . . T .
blockSeqs : . T . . T .
blockSeqs : . T . . T .
blockSeqs : . T . . T .
blockSeqs : . T . . T .
blockSeqs : . T . . T .
blockSeqs : . . . . T .
blockSeqs : . . . . T .
blockSeqs : . . . . T .
blockSeqs : . . . T .
blockSeqs : . . G .
blockSeqs : . G .
blockSeqs : T .
blockSeqs : G .
blockSeqs : G .
blockSeqs : G .
blockSeqs : G .
blockSeqs : G .
blockSeqs : A .
blockSeqCons :
originalCons : TTTTTCCCGTAGAAAGGAAGGGATGTGTCTATCCATGCTGAGATTTT--TAAGAACAACTTCCATTTT-CTCTTCCGCCATGTTCAATATTCTTTCTC--TCAAAGAAGCTTGTTGTTTAAAGCGGTGTCAGTATAGAAAT-CACCCCGTCAAAATGATCTCGTCATCATAAGGAA
finalCons : TTTTTCCCGTAGAAAGGAAGGGATGTGTCTATCCATGCTGAGATTTT--TAAGAACAACTTCCATTTT-CTCTTCCGCCATGTTCAATATTCTTTCTC--TCAAAGAAGCTTGTTGTTTAAAGCGGTGTCAGTATAGAAAT-CACCCCGTCAAAATGATCTCGTCATCATAAGGAA
Alignments
lowQualScore : 33 1 2 33 1 1
lowQualScore : .. . . .. . .
lowQualScore : 77 7 4 11 6 6
consensus : TTTTTCCCGTAGAAAGGAAGGGATGTGTCTATCCATGCTGAGATTTT--TAAGAACAACTTCCATTTT-CTCTTCCGCCATGTTCAATATTCTTTCTC--TCAAAGAAGCTTGTTGTTTAAAGCGGTGTCAGTATAGAAAT-CACCCCGTCAAAATGATCTCGTCATCATAAGGAA
Reference ( family-2509 ) : TTTTTCCCGTAGAAAGGAAGGGATGTGTCTATCCATGCTGAGATTTT--TAAGAACAACTTCCATTTT-CTCTTCCGCCATGTTCAATATTCTTTCTC--TCAAAGAAGCTTGTTGTTTAAAGCGGTGTCAGTATAGAAAT-CACCCCGTCAAAATGATCTCGTCATCATAAGGAA
gi|1 : TTTTTTCCGTAGAAAGGAAAGGATGTGTCTATCCTCGCTGAGATTTT--AAAGAACAACTTCCATTTT-CTCTTCCGCCATGTTCAATATTCTTTCTC--TCAAAGAAGCTGGTTGTTTAAAGCGGTGTCAATATAGAAAT-CACCCAGTCAAACTGATCTCGTCATCATAAGGAA
gi|10 : CTGATATTTT--TAAGAACAACTTCCAT-------------CATGTTCAATATTCTTTCTC--TCAAAGAAGCTTGTTGTTAAAACCGGTGTCAATATAGAAAT-CACCCCGTCAAAATGATCTCGTCATCATAA
gi|11 : caccTTTTCCCGTAGAAAGGAAGGGGTGTGTCTATCCATGCTGAGATTTT--TAAGAACAACTTCCATTTT-CTCTTCCGCCATGTTCAGTATTCTTTCTC--TCAAAGAAACTTGTTGTTTAAAGC
gi|12 : TTTCCCGTAGAAAGGAAGGGATGTGTCTATCCATGCTGAGATTTT--TAAGAACAACTTCGATTTT-CTCTTCCGCCATGTTCAATATTCTTTCTC--TCAAAGAAACTTGTTGTTTAAAGCc
gi|13 : TTCCCGTAGAAAGGAAGGGGTGTGTCTATCCATGCTGAGATTTT--TAAGAACAACTTCCATTTT-CTCTTCCGCCATGTTCAGTATTCTTTCTC--TCAAAGAAACTTGTTGTTTAAAGCc
gi|14 : TTCGCGTAGAAAGGAAGGGATGTGTCTATCCATGCTGAGATTTT--TAAGAACAACTTCCATTTT-CTCTTCTGCCATGTTCAATAGTCTTTCTC--TCAAAGAAACTTGTTGTTTAAAGCc
gi|15 : TCCATTTT-CTCTTCCGCCACGTTCAATATTCTTTCTG--TCAAAGAAGCTTGTTGTTTAAAGCGGTGTCGATATAGAAAT-CACCCAGTCAAACTGATCTCGTCATCATAAGGAAc
gi|16 : CTA--TCAAAGAAGCTTGTTGTTTAAAGCGGTGTCAATATAGAAAA-CATCACGTCAAAATGATCTCGTCATCATA
gi|17 : tttgttgaactttgttgttggatgaGTAGAAAGGAAGGGATGTGTCTATCCATGCTGAGATTTT--TAAGAACAACTTCCA-----------------GTTCAATATTCTTTCTC--TCAAAGAAACTTGTTGTTTAAAGC
gi|18 : CCGTAGAAAGGAAGGGATGTGT-TATCCATGCTGAGATTTTGCTGAGAAAAACTTCCATTTT-CTCTTCCGCCATGTTCAATATTCTTTCT
gi|19 : tctaATTCTTTCTC--TCAAAGAAGCTTGTTGTTTAAACCGGTGTCAATATAGAAAT-CACCCCATCAAAATGATCTCGTCATCATAA
gi|2 : TTTTTCCCGTTGAAAGGAAGGGACGTGTCTATCCACTCTGAGATTTT--AGAGAACAACTTTCATTTT-CTCTTCCGTCATGTGTAATATTCTTCCTG--TCAAAGAAGCTTGTTGTTTAAAGCGGTGTCAATATAGAAAT-CACCCAGTCAAACTGATCTCGTCATCATAA
gi|20 : CGGTGTCAGTATATAAAT-CACCCTGTCAAAATGATCTCGTCATCATAAGGAA
gi|21 : CGGTGTCAGTATATAAAT-CACCCCGTCAAAATGATCTCGTCATCATAAGGAA
gi|22 : GGTGTCAGTATATAAAT-CACCCCGTCAAAATGATCTCGTCATCATAAGGAA
gi|23 : GGTGTCAGTATATAAAT-CACCCCGTCAAAATGATCTCGTCATCATAAGGAA
gi|24 : CGGTGTCGGTATATAAAT-CACCCCGTCAAAATGATCTCGTCATC
gi|25 : ttgacaCGGTGTCGGTATATAAAT-CACCCCGTCAAAATGATCTCGTCATC
gi|26 : gacaGGTGTCAGTATATAAAT-CACCCCGTCAAAATGATATTGTCATCATAAG
gi|27 : CGGTGTCAGTATATAAAT-CACCCCATCAAAATGATCTCGTCATCATGA
gi|28 : GGTGTCAGTATATAAAT-CACCCCGTCAAAATGATCTCGTCATCATAA
gi|29 : GGTGTCAGTATATAAAT-CACCCCGTCAAAATGATCTCGTCA
gi|3 : TTTCCCGTAGAAAGGAAATGATGTGTCTATCCATGCTGAGATTTT--TAATAACAACTTCCATTTTTCTCTTCCACCATGTTATATATTCTTTCTC--TCAAAGAAGCTTGTTGTTTAAAGCGGTGTCAATATAGAAAT-CACCCCGTCAAAATGATCTCGTCATCATAAactta
gi|30 : TATAGAAAT-CACCCAGTCAAACTGATCTCGTCATAATAAGGAA
gi|31 : aGGTGTCAGTATATAAAT-CACCCCGTCAAAATGATATTGTCAT
gi|4 : TTTTCCCGTAGAAAGGAAAGGATGTGTCTATCCACGCTGAGATTTT--AAAAAACAACTTCCATTTT-CTCTTCCGCCATTTTCAATATTGTTTCTC--TCAAAGAAACTTGTTGTTTAAAGCGGTGTCAATATAGAAAT-CACCTAATCAAACTGATCTCGTCA
gi|5 : CCGTAGAAAGGAAGGAATGTGTCTATCCATGCTCAGATTTT--TAAGAACAACTTCCAT-------------CATGTCCAATATTCTTTATC--TCAAAGAAG-TAGTTGTTTAAAGCGGTGTCAATATAGTAAT-CACCCCGTCAAAACGATCTCGTCATCATAAGGAAggaag
gi|6 : tctaCGTAGAAAGGAAGGGATGTGTCTATCCATGCTGAGATTTT--TAAGAACAACTTCCAT-------------CATGTTCTATATTCTTTTTC--TCAAAGAAGCGTGTTGTTTAAAGCAGTGTCAATATAGAAAT-CATCCCGTCAAAATGATCTCGTCATCATA
gi|7 : atTTTTCCCGTATAAAGGAAGAGATGTATCTATCCATGCTGAGA---------------CTTCCATTT--------------GTTCAATGTTCTTTCTC--TCAAAGAAGCTTGTTGTTTAAAGCGTTGTCGATATAGAAAT-CACGACGTCAAAATGATCTCGTCATCATAAG
gi|8 : TGCTGAGATTTT--TAAGAACAACTTCCATTTT-CTCTTCCGCCATGTTCAATATTCTTTCTC--TCAAATAAGCTTGTTGTTAAAACTTGTGTCAATATAGAAAT-CACCCCGTCAGAATGATCTCGTCATCATCAGGA
gi|9 : T-TTCATCCGACATTTTGAATATT---TCCCGGTGAATGGA-CACATTAT--AAAGCGGTG-CAACCTCAAAATTCTCCTGGTCACAATGATCTCGTCATCATTAG