lowQualScore                  :                                    22           111                                                                     1                                        1      1                     
lowQualScore                  :      4 3            3              00           444           2   444 1 99999999   0    0                               3 55555                       2    1     0      0                     
lowQualScore                  :      . .            .              ..           ...           .   ... . ........   .    .                               . .....                       .    .     .      .                     
lowQualScore                  :      1 6            5              33           666           5   444 7 88888888   1    4                               0 99999                       1    7     7      8                     
consensus                     : TTTTTCC-CGTAGAAAGGAAGGGATGTGTCTATCCATGCTGAGATTTTT--AAGAACAACTT-CCA---TTT------T-CTCTTCCGCCATGTTCAATATTCTTTCTCTCAAAGAAGCTTG-----TTGTTTAAAGCGGTGTCAGTATANAAAT-CACCCCGTCAAAATGATCTCGTCATCATAAGGAA
Reference ( gi|1 )            : TTTTTTC-CGTAGAAAGGAAAGGATGTGTCTATCCTCGCTGAGATTTTA--AAGAACAACTT-CCA---TTT------T-CTCTTCCGCCATGTTCAATATTCTTTCTCTCAAAGAAGCTGG-----TTGTTTAAAGCGGTGTCAATATAGAAAT-CACCCAGTCAAACTGATCTCGTCATCATAAGGAA
gi|2                          : TTTTTCC-CGTTGAAAGGAAGGGACGTGTCTATCCACTCTGAGATTTTA--GAGAACAACTT-TCA---TTT------T-CTCTTCCGTCATGTGTAATATTCTTCCTGTCAAAGAAGCTTG-----TTGTTTAAAGCGGTGTCAATATAGAAAT-CACCCAGTCAAACTGATCTCGTCATCATAA
gi|4                          :  TTTTCC-CGTAGAAAGGAAAGGATGTGTCTATCCACGCTGAGATTTTA--AAAAACAACTT-CCA---TTT------T-CTCTTCCGCCATTTTCAATATTGTTTCTCTCAAAGAAACTTG-----TTGTTTAAAGCGGTGTCAATATAGAAAT-CACCTAATCAAACTGATCTCGTCA
gi|11                         :  TTTTCC-CGTAGAAAGGAAGGGGTGTGTCTATCCATGCTGAGATTTTT--AAGAACAACTT-CCA---TTT------T-CTCTTCCGCCATGTTCAGTATTCTTTCTCTCAAAGAAACTTG-----TTGTTTAAAGCggaag
gi|7                          :  TTTTCC-CGTATAAAGGAAGAGATGTATCTATCCATGCTGAGA---------------CTT-CCA---TTT--------------------GTTCAATGTTCTTTCTCTCAAAGAAGCTTG-----TTGTTTAAAGCGTTGTCGATATAGAAAT-CACGACGTCAAAATGATCTCGTCATCATAAGc
gi|3                          :   TTTCC-CGTAGAAAGGAAATGATGTGTCTATCCATGCTGAGATTTTT--AATAACAACTT-CCA---TTT------TTCTCTTCCACCATGTTATATATTCTTTCTCTCAAAGAAGCTTG-----TTGTTTAAAGCGGTGTCAATATAGAAAT-CACCCCGTCAAAATGATCTCGTCATCATAA
gi|12                         :   TTTCC-CGTAGAAAGGAAGGGATGTGTCTATCCATGCTGAGATTTTT--AAGAACAACTT-CGA---TTT------T-CTCTTCCGCCATGTTCAATATTCTTTCTCTCAAAGAAACTTG-----TTGTTTAAAGC
gi|13                         :    TTCC-CGTAGAAAGGAAGGGGTGTGTCTATCCATGCTGAGATTTTT--AAGAACAACTT-CCA---TTT------T-CTCTTCCGCCATGTTCAGTATTCTTTCTCTCAAAGAAACTTG-----TTGTTTAAAGCc
gi|14                         :     TTCGCGTAGAAAGGAAGGGATGTGTCTATCCATGCTGAGATTTTT--AAGAACAACTT-CCA---TTT------T-CTCTTCTGCCATGTTCAATAGTCTTTCTCTCAAAGAAACTTG-----TTGTTTAAAGCc
gi|5                          :       C-CGTAGAAAGGAAGGAATGTGTCTATCCATGCTCAGATTTTT--AAGAACAACTT-CCA---T-------------------CATGTCCAATATTCTTTATCTCAAAGAAG-TAG-----TTGTTTAAAGCGGTGTCAATATAGTAAT-CACCCCGTCAAAACGATCTCGTCATCATAAGGAAc
gi|18                         :   tctaC-CGTAGAAAGGAAGGGATGTGT-TATCCATGCTGAGATTTTGCTGAGAAAAACTT-CCA---TTT------T-CTCTTCCGCCATGTTCAATATTCTTTCT
gi|6                          :    tcta-CGTAGAAAGGAAGGGATGTGTCTATCCATGCTGAGATTTTT--AAGAACAACTT-CCA---T-------------------CATGTTCTATATTCTTTTTCTCAAAGAAGCGTG-----TTGTTTAAAGCAGTGTCAATATAGAAAT-CATCCCGTCAAAATGATCTCGTCATCATA
gi|17                         :        atGTAGAAAGGAAGGGATGTGTCTATCCATGCTGAGATTTTT--AAGAACAACTT-CCA--------------------------GTTCAATATTCTTTCTCTCAAAGAAACTTG-----TTGTTTAAAGC
gi|8                          :                                      GCTGAGATTTTT--AAGAACAACTT-CCA---TTT------T-CTCTTCCGCCATGTTCAATATTCTTTCTCTCAAATAAGCTTG-----TTGTTAAAACTTGTGTCAATATAGAAAT-CACCCCGTCAGAATGATCTCGTCATCATCAGGA
gi|10                         :                                      tCTGATATTTTT--AAGAACAACTT-CCA---T-------------------CATGTTCAATATTCTTTCTCTCAAAGAAGCTTG-----TTGTTAAAACCGGTGTCAATATAGAAAT-CACCCCGTCAAAATGATCTCGTCATCATAA
gi|9                          :                                           caccTTA--AAGATAAACTTACCAAAATTTGTCTGAT-TTCATCCGACATTTTGAATATT-----TCCCGGTGAA--TGGACACATTAT--AAAGCGGTG-CAACCTCAAAATTCTCCTGGTCACAATGATCTCGTCATCATTAG
gi|15                         :                                                              T-CCA---TTT------T-CTCTTCCGCCACGTTCAATATTCTTTCTGTCAAAGAAGCTTG-----TTGTTTAAAGCGGTGTCGATATAGAAAT-CACCCAGTCAAACTGATCTCGTCATCATAAGGAA
gi|19                         :                                                                                                    ATTCTTTCTCTCAAAGAAGCTTG-----TTGTTTAAACCGGTGTCAATATAGAAAT-CACCCCATCAAAATGATCTCGTCATCATAA
gi|16                         :                                                                                                           CTATCAAAGAAGCTTG-----TTGTTTAAAGCGGTGTCAATATAGAAAA-CATCACGTCAAAATGATCTCGTCATCATA
gi|21                         :                                                                                                                 tttgttgaactttgttgttggatgaCGGTGTCAGTATATAAAT-CACCCCGTCAAAATGATCTCGTCATCATAAGGAA
gi|20                         :                                                                                                                                          CGGTGTCAGTATATAAAT-CACCCTGTCAAAATGATCTCGTCATCATAAGGAA
gi|27                         :                                                                                                                                          CGGTGTCAGTATATAAAT-CACCCCATCAAAATGATCTCGTCATCATGA
gi|25                         :                                                                                                                                          CGGTGTCGGTATATAAAT-CACCCCGTCAAAATGATCTCGTCATC
gi|24                         :                                                                                                                                      gacaCGGTGTCGGTATATAAAT-CACCCCGTCAAAATGATCTCGTCATC
gi|23                         :                                                                                                                                     ttgacaGGTGTCAGTATATAAAT-CACCCCGTCAAAATGATCTCGTCATCATAAGGAA
gi|22                         :                                                                                                                                           GGTGTCAGTATATAAAT-CACCCCGTCAAAATGATCTCGTCATCATAAGGAA
gi|28                         :                                                                                                                                           GGTGTCAGTATATAAAT-CACCCCGTCAAAATGATCTCGTCATCATAA
gi|26                         :                                                                                                                                           GGTGTCAGTATATAAAT-CACCCCGTCAAAATGATATTGTCATCATAAG
gi|29                         :                                                                                                                                           GGTGTCAGTATATAAAT-CACCCCGTCAAAATGATCTCGTCA
gi|31                         :                                                                                                                                           GGTGTCAGTATATAAAT-CACCCCGTCAAAATGATATTGTCATactta
gi|30                         :                                                                                                                                                  ATATAGAAAT-CACCCAGTCAAACTGATCTCGTCATAATAAGGAA





Alignments
lowQualScore                  :                                                                 33                1  2                             33                                    1    1                                  
lowQualScore                  :                                                                 ..                .  .                             ..                                    .    .                                  
lowQualScore                  :                                                                 77                7  4                             11                                    0    6                                  
consensus                     :                  TTTTTCCCGTAGAAAGGAAGGGATGTGTCTATCCATGCTGAGATTTT--TAAGAACAACTTCCATTTT-CTCTTCCGCCATGTTCAATATTCTTTCTC--TCAAAGAAGCTTGTTGTTTAAAGCGGTGTCAGTATAGAAAT-CACCCCGTCAAAATGATCTCGTCATCATAAGGAA
Reference ( family-2509 )     :                  TTTTTCCCGTAGAAAGGAAGGGATGTGTCTATCCATGCTGAGATTTT--TAAGAACAACTTCCATTTT-CTCTTCCGCCATGTTCAATATTCTTTCTC--TCAAAGAAGCTTGTTGTTTAAAGCGGTGTCAGTATANAAAT-CACCCCGTCAAAATGATCTCGTCATCATAAGGAA
gi|1                          :                  TTTTTTCCGTAGAAAGGAAAGGATGTGTCTATCCTCGCTGAGATTTT--AAAGAACAACTTCCATTTT-CTCTTCCGCCATGTTCAATATTCTTTCTC--TCAAAGAAGCTGGTTGTTTAAAGCGGTGTCAATATAGAAAT-CACCCAGTCAAACTGATCTCGTCATCATAAGGAA
gi|10                         :                                                       CTGATATTTT--TAAGAACAACTTCCAT-------------CATGTTCAATATTCTTTCTC--TCAAAGAAGCTTGTTGTTAAAACCGGTGTCAATATAGAAAT-CACCCCGTCAAAATGATCTCGTCATCATAA
gi|11                         :               caccTTTTCCCGTAGAAAGGAAGGGGTGTGTCTATCCATGCTGAGATTTT--TAAGAACAACTTCCATTTT-CTCTTCCGCCATGTTCAGTATTCTTTCTC--TCAAAGAAACTTGTTGTTTAAAGC
gi|12                         :                    TTTCCCGTAGAAAGGAAGGGATGTGTCTATCCATGCTGAGATTTT--TAAGAACAACTTCGATTTT-CTCTTCCGCCATGTTCAATATTCTTTCTC--TCAAAGAAACTTGTTGTTTAAAGCc
gi|13                         :                     TTCCCGTAGAAAGGAAGGGGTGTGTCTATCCATGCTGAGATTTT--TAAGAACAACTTCCATTTT-CTCTTCCGCCATGTTCAGTATTCTTTCTC--TCAAAGAAACTTGTTGTTTAAAGCc
gi|14                         :                     TTCGCGTAGAAAGGAAGGGATGTGTCTATCCATGCTGAGATTTT--TAAGAACAACTTCCATTTT-CTCTTCTGCCATGTTCAATAGTCTTTCTC--TCAAAGAAACTTGTTGTTTAAAGCc
gi|15                         :                                                                              TCCATTTT-CTCTTCCGCCACGTTCAATATTCTTTCTG--TCAAAGAAGCTTGTTGTTTAAAGCGGTGTCGATATAGAAAT-CACCCAGTCAAACTGATCTCGTCATCATAAGGAAc
gi|16                         :                                                                                                                 CTA--TCAAAGAAGCTTGTTGTTTAAAGCGGTGTCAATATAGAAAA-CATCACGTCAAAATGATCTCGTCATCATA
gi|17                         : tttgttgaactttgttgttggatgaGTAGAAAGGAAGGGATGTGTCTATCCATGCTGAGATTTT--TAAGAACAACTTCCA-----------------GTTCAATATTCTTTCTC--TCAAAGAAACTTGTTGTTTAAAGC
gi|18                         :                        CCGTAGAAAGGAAGGGATGTGT-TATCCATGCTGAGATTTTGCTGAGAAAAACTTCCATTTT-CTCTTCCGCCATGTTCAATATTCTTTCT
gi|19                         :                                                                                                      tctaATTCTTTCTC--TCAAAGAAGCTTGTTGTTTAAACCGGTGTCAATATAGAAAT-CACCCCATCAAAATGATCTCGTCATCATAA
gi|2                          :                  TTTTTCCCGTTGAAAGGAAGGGACGTGTCTATCCACTCTGAGATTTT--AGAGAACAACTTTCATTTT-CTCTTCCGTCATGTGTAATATTCTTCCTG--TCAAAGAAGCTTGTTGTTTAAAGCGGTGTCAATATAGAAAT-CACCCAGTCAAACTGATCTCGTCATCATAA
gi|20                         :                                                                                                                                             CGGTGTCAGTATATAAAT-CACCCTGTCAAAATGATCTCGTCATCATAAGGAA
gi|21                         :                                                                                                                                             CGGTGTCAGTATATAAAT-CACCCCGTCAAAATGATCTCGTCATCATAAGGAA
gi|22                         :                                                                                                                                              GGTGTCAGTATATAAAT-CACCCCGTCAAAATGATCTCGTCATCATAAGGAA
gi|23                         :                                                                                                                                              GGTGTCAGTATATAAAT-CACCCCGTCAAAATGATCTCGTCATCATAAGGAA
gi|24                         :                                                                                                                                             CGGTGTCGGTATATAAAT-CACCCCGTCAAAATGATCTCGTCATC
gi|25                         :                                                                                                                                       ttgacaCGGTGTCGGTATATAAAT-CACCCCGTCAAAATGATCTCGTCATC
gi|26                         :                                                                                                                                          gacaGGTGTCAGTATATAAAT-CACCCCGTCAAAATGATATTGTCATCATAAG
gi|27                         :                                                                                                                                             CGGTGTCAGTATATAAAT-CACCCCATCAAAATGATCTCGTCATCATGA
gi|28                         :                                                                                                                                              GGTGTCAGTATATAAAT-CACCCCGTCAAAATGATCTCGTCATCATAA
gi|29                         :                                                                                                                                              GGTGTCAGTATATAAAT-CACCCCGTCAAAATGATCTCGTCA
gi|3                          :                    TTTCCCGTAGAAAGGAAATGATGTGTCTATCCATGCTGAGATTTT--TAATAACAACTTCCATTTTTCTCTTCCACCATGTTATATATTCTTTCTC--TCAAAGAAGCTTGTTGTTTAAAGCGGTGTCAATATAGAAAT-CACCCCGTCAAAATGATCTCGTCATCATAAactta
gi|30                         :                                                                                                                                                      TATAGAAAT-CACCCAGTCAAACTGATCTCGTCATAATAAGGAA
gi|31                         :                                                                                                                                             aGGTGTCAGTATATAAAT-CACCCCGTCAAAATGATATTGTCAT
gi|4                          :                   TTTTCCCGTAGAAAGGAAAGGATGTGTCTATCCACGCTGAGATTTT--AAAAAACAACTTCCATTTT-CTCTTCCGCCATTTTCAATATTGTTTCTC--TCAAAGAAACTTGTTGTTTAAAGCGGTGTCAATATAGAAAT-CACCTAATCAAACTGATCTCGTCA
gi|5                          :                        CCGTAGAAAGGAAGGAATGTGTCTATCCATGCTCAGATTTT--TAAGAACAACTTCCAT-------------CATGTCCAATATTCTTTATC--TCAAAGAAG-TAGTTGTTTAAAGCGGTGTCAATATAGTAAT-CACCCCGTCAAAACGATCTCGTCATCATAAGGAAggaag
gi|6                          :                     tctaCGTAGAAAGGAAGGGATGTGTCTATCCATGCTGAGATTTT--TAAGAACAACTTCCAT-------------CATGTTCTATATTCTTTTTC--TCAAAGAAGCGTGTTGTTTAAAGCAGTGTCAATATAGAAAT-CATCCCGTCAAAATGATCTCGTCATCATA
gi|7                          :                 atTTTTCCCGTATAAAGGAAGAGATGTATCTATCCATGCTGAGA---------------CTTCCATTT--------------GTTCAATGTTCTTTCTC--TCAAAGAAGCTTGTTGTTTAAAGCGTTGTCGATATAGAAAT-CACGACGTCAAAATGATCTCGTCATCATAAG
gi|8                          :                                                     TGCTGAGATTTT--TAAGAACAACTTCCATTTT-CTCTTCCGCCATGTTCAATATTCTTTCTC--TCAAATAAGCTTGTTGTTAAAACTTGTGTCAATATAGAAAT-CACCCCGTCAGAATGATCTCGTCATCATCAGGA
gi|9                          :                                                                                     T-TTCATCCGACATTTTGAATATT---TCCCGGTGAATGGA-CACATTAT--AAAGCGGTG-CAACCTCAAAATTCTCCTGGTCACAATGATCTCGTCATCATTAG





Alignments
lowQualScore                  :                                                                 33                1  2                             33                                    1    1                                  
lowQualScore                  :                                                                 ..                .  .                             ..                                    .    .                                  
lowQualScore                  :                                                                 77                7  4                             11                                    6    6                                  
consensus                     :                  TTTTTCCCGTAGAAAGGAAGGGATGTGTCTATCCATGCTGAGATTTT--TAAGAACAACTTCCATTTT-CTCTTCCGCCATGTTCAATATTCTTTCTC--TCAAAGAAGCTTGTTGTTTAAAGCGGTGTCAGTATAGAAAT-CACCCCGTCAAAATGATCTCGTCATCATAAGGAA
Reference ( family-2509 )     :                  TTTTTCCCGTAGAAAGGAAGGGATGTGTCTATCCATGCTGAGATTTT--TAAGAACAACTTCCATTTT-CTCTTCCGCCATGTTCAATATTCTTTCTC--TCAAAGAAGCTTGTTGTTTAAAGCGGTGTCAGTATAGAAAT-CACCCCGTCAAAATGATCTCGTCATCATAAGGAA
gi|1                          :                  TTTTTTCCGTAGAAAGGAAAGGATGTGTCTATCCTCGCTGAGATTTT--AAAGAACAACTTCCATTTT-CTCTTCCGCCATGTTCAATATTCTTTCTC--TCAAAGAAGCTGGTTGTTTAAAGCGGTGTCAATATAGAAAT-CACCCAGTCAAACTGATCTCGTCATCATAAGGAA
gi|10                         :                                                       CTGATATTTT--TAAGAACAACTTCCAT-------------CATGTTCAATATTCTTTCTC--TCAAAGAAGCTTGTTGTTAAAACCGGTGTCAATATAGAAAT-CACCCCGTCAAAATGATCTCGTCATCATAA
gi|11                         :               caccTTTTCCCGTAGAAAGGAAGGGGTGTGTCTATCCATGCTGAGATTTT--TAAGAACAACTTCCATTTT-CTCTTCCGCCATGTTCAGTATTCTTTCTC--TCAAAGAAACTTGTTGTTTAAAGC
gi|12                         :                    TTTCCCGTAGAAAGGAAGGGATGTGTCTATCCATGCTGAGATTTT--TAAGAACAACTTCGATTTT-CTCTTCCGCCATGTTCAATATTCTTTCTC--TCAAAGAAACTTGTTGTTTAAAGCc
gi|13                         :                     TTCCCGTAGAAAGGAAGGGGTGTGTCTATCCATGCTGAGATTTT--TAAGAACAACTTCCATTTT-CTCTTCCGCCATGTTCAGTATTCTTTCTC--TCAAAGAAACTTGTTGTTTAAAGCc
gi|14                         :                     TTCGCGTAGAAAGGAAGGGATGTGTCTATCCATGCTGAGATTTT--TAAGAACAACTTCCATTTT-CTCTTCTGCCATGTTCAATAGTCTTTCTC--TCAAAGAAACTTGTTGTTTAAAGCc
gi|15                         :                                                                              TCCATTTT-CTCTTCCGCCACGTTCAATATTCTTTCTG--TCAAAGAAGCTTGTTGTTTAAAGCGGTGTCGATATAGAAAT-CACCCAGTCAAACTGATCTCGTCATCATAAGGAAc
gi|16                         :                                                                                                                 CTA--TCAAAGAAGCTTGTTGTTTAAAGCGGTGTCAATATAGAAAA-CATCACGTCAAAATGATCTCGTCATCATA
gi|17                         : tttgttgaactttgttgttggatgaGTAGAAAGGAAGGGATGTGTCTATCCATGCTGAGATTTT--TAAGAACAACTTCCA-----------------GTTCAATATTCTTTCTC--TCAAAGAAACTTGTTGTTTAAAGC
gi|18                         :                        CCGTAGAAAGGAAGGGATGTGT-TATCCATGCTGAGATTTTGCTGAGAAAAACTTCCATTTT-CTCTTCCGCCATGTTCAATATTCTTTCT
gi|19                         :                                                                                                      tctaATTCTTTCTC--TCAAAGAAGCTTGTTGTTTAAACCGGTGTCAATATAGAAAT-CACCCCATCAAAATGATCTCGTCATCATAA
gi|2                          :                  TTTTTCCCGTTGAAAGGAAGGGACGTGTCTATCCACTCTGAGATTTT--AGAGAACAACTTTCATTTT-CTCTTCCGTCATGTGTAATATTCTTCCTG--TCAAAGAAGCTTGTTGTTTAAAGCGGTGTCAATATAGAAAT-CACCCAGTCAAACTGATCTCGTCATCATAA
gi|20                         :                                                                                                                                             CGGTGTCAGTATATAAAT-CACCCTGTCAAAATGATCTCGTCATCATAAGGAA
gi|21                         :                                                                                                                                             CGGTGTCAGTATATAAAT-CACCCCGTCAAAATGATCTCGTCATCATAAGGAA
gi|22                         :                                                                                                                                              GGTGTCAGTATATAAAT-CACCCCGTCAAAATGATCTCGTCATCATAAGGAA
gi|23                         :                                                                                                                                              GGTGTCAGTATATAAAT-CACCCCGTCAAAATGATCTCGTCATCATAAGGAA
gi|24                         :                                                                                                                                             CGGTGTCGGTATATAAAT-CACCCCGTCAAAATGATCTCGTCATC
gi|25                         :                                                                                                                                       ttgacaCGGTGTCGGTATATAAAT-CACCCCGTCAAAATGATCTCGTCATC
gi|26                         :                                                                                                                                          gacaGGTGTCAGTATATAAAT-CACCCCGTCAAAATGATATTGTCATCATAAG
gi|27                         :                                                                                                                                             CGGTGTCAGTATATAAAT-CACCCCATCAAAATGATCTCGTCATCATGA
gi|28                         :                                                                                                                                              GGTGTCAGTATATAAAT-CACCCCGTCAAAATGATCTCGTCATCATAA
gi|29                         :                                                                                                                                              GGTGTCAGTATATAAAT-CACCCCGTCAAAATGATCTCGTCA
gi|3                          :                    TTTCCCGTAGAAAGGAAATGATGTGTCTATCCATGCTGAGATTTT--TAATAACAACTTCCATTTTTCTCTTCCACCATGTTATATATTCTTTCTC--TCAAAGAAGCTTGTTGTTTAAAGCGGTGTCAATATAGAAAT-CACCCCGTCAAAATGATCTCGTCATCATAAactta
gi|30                         :                                                                                                                                                      TATAGAAAT-CACCCAGTCAAACTGATCTCGTCATAATAAGGAA
gi|31                         :                                                                                                                                             aGGTGTCAGTATATAAAT-CACCCCGTCAAAATGATATTGTCAT
gi|4                          :                   TTTTCCCGTAGAAAGGAAAGGATGTGTCTATCCACGCTGAGATTTT--AAAAAACAACTTCCATTTT-CTCTTCCGCCATTTTCAATATTGTTTCTC--TCAAAGAAACTTGTTGTTTAAAGCGGTGTCAATATAGAAAT-CACCTAATCAAACTGATCTCGTCA
gi|5                          :                        CCGTAGAAAGGAAGGAATGTGTCTATCCATGCTCAGATTTT--TAAGAACAACTTCCAT-------------CATGTCCAATATTCTTTATC--TCAAAGAAG-TAGTTGTTTAAAGCGGTGTCAATATAGTAAT-CACCCCGTCAAAACGATCTCGTCATCATAAGGAAggaag
gi|6                          :                     tctaCGTAGAAAGGAAGGGATGTGTCTATCCATGCTGAGATTTT--TAAGAACAACTTCCAT-------------CATGTTCTATATTCTTTTTC--TCAAAGAAGCGTGTTGTTTAAAGCAGTGTCAATATAGAAAT-CATCCCGTCAAAATGATCTCGTCATCATA
gi|7                          :                 atTTTTCCCGTATAAAGGAAGAGATGTATCTATCCATGCTGAGA---------------CTTCCATTT--------------GTTCAATGTTCTTTCTC--TCAAAGAAGCTTGTTGTTTAAAGCGTTGTCGATATAGAAAT-CACGACGTCAAAATGATCTCGTCATCATAAG
gi|8                          :                                                     TGCTGAGATTTT--TAAGAACAACTTCCATTTT-CTCTTCCGCCATGTTCAATATTCTTTCTC--TCAAATAAGCTTGTTGTTAAAACTTGTGTCAATATAGAAAT-CACCCCGTCAGAATGATCTCGTCATCATCAGGA
gi|9                          :                                                                                     T-TTCATCCGACATTTTGAATATT---TCCCGGTGAATGGA-CACATTAT--AAAGCGGTG-CAACCTCAAAATTCTCCTGGTCACAATGATCTCGTCATCATTAG


blockSeqs                     :                                                                 GC                T  T                             GG                                    G    T
blockSeqs                     :                                                                 .                 T  .                             .                                     G    .
blockSeqs                     :                                                                 .                 T  .                             .                                     G    .
blockSeqs                     :                                                                 .                 T  .                             .                                     G    .
blockSeqs                     :                                                                 .                 T  .                             .                                     G    .
blockSeqs                     :                                                                 .                 T  .                             .                                     T    .
blockSeqs                     :                                                                 .                 T  .                             .                                     T    .
blockSeqs                     :                                                                 .                 T  .                             .                                     T    .
blockSeqs                     :                                                                 .                 T  .                             .                                     T    .
blockSeqs                     :                                                                 .                 T  .                             .                                     T    .
blockSeqs                     :                                                                 .                 T  .                             .                                     T    .
blockSeqs                     :                                                                 .                 .  .                             .                                     T    .
blockSeqs                     :                                                                 .                 .  .                             .                                     T    .
blockSeqs                     :                                                                 .                 .  .                             .                                     T    .
blockSeqs                     :                                                                                   .  .                             .                                     T    .
blockSeqs                     :                                                                                      .                             .                                     G    .
blockSeqs                     :                                                                                                                    .                                     G    .
blockSeqs                     :                                                                                                                                                          T    .
blockSeqs                     :                                                                                                                                                          G    .
blockSeqs                     :                                                                                                                                                          G    .
blockSeqs                     :                                                                                                                                                          G    .
blockSeqs                     :                                                                                                                                                          G    .
blockSeqs                     :                                                                                                                                                          G    .
blockSeqs                     :                                                                                                                                                          A    .


blockSeqCons                  :                  
originalCons                  :                  TTTTTCCCGTAGAAAGGAAGGGATGTGTCTATCCATGCTGAGATTTT--TAAGAACAACTTCCATTTT-CTCTTCCGCCATGTTCAATATTCTTTCTC--TCAAAGAAGCTTGTTGTTTAAAGCGGTGTCAGTATAGAAAT-CACCCCGTCAAAATGATCTCGTCATCATAAGGAA
finalCons                     :                  TTTTTCCCGTAGAAAGGAAGGGATGTGTCTATCCATGCTGAGATTTT--TAAGAACAACTTCCATTTT-CTCTTCCGCCATGTTCAATATTCTTTCTC--TCAAAGAAGCTTGTTGTTTAAAGCGGTGTCAGTATAGAAAT-CACCCCGTCAAAATGATCTCGTCATCATAAGGAA





Alignments
lowQualScore                  :                                                                 33                1  2                             33                                    1    1                                  
lowQualScore                  :                                                                 ..                .  .                             ..                                    .    .                                  
lowQualScore                  :                                                                 77                7  4                             11                                    6    6                                  
consensus                     :                  TTTTTCCCGTAGAAAGGAAGGGATGTGTCTATCCATGCTGAGATTTT--TAAGAACAACTTCCATTTT-CTCTTCCGCCATGTTCAATATTCTTTCTC--TCAAAGAAGCTTGTTGTTTAAAGCGGTGTCAGTATAGAAAT-CACCCCGTCAAAATGATCTCGTCATCATAAGGAA
Reference ( family-2509 )     :                  TTTTTCCCGTAGAAAGGAAGGGATGTGTCTATCCATGCTGAGATTTT--TAAGAACAACTTCCATTTT-CTCTTCCGCCATGTTCAATATTCTTTCTC--TCAAAGAAGCTTGTTGTTTAAAGCGGTGTCAGTATAGAAAT-CACCCCGTCAAAATGATCTCGTCATCATAAGGAA
gi|1                          :                  TTTTTTCCGTAGAAAGGAAAGGATGTGTCTATCCTCGCTGAGATTTT--AAAGAACAACTTCCATTTT-CTCTTCCGCCATGTTCAATATTCTTTCTC--TCAAAGAAGCTGGTTGTTTAAAGCGGTGTCAATATAGAAAT-CACCCAGTCAAACTGATCTCGTCATCATAAGGAA
gi|10                         :                                                       CTGATATTTT--TAAGAACAACTTCCAT-------------CATGTTCAATATTCTTTCTC--TCAAAGAAGCTTGTTGTTAAAACCGGTGTCAATATAGAAAT-CACCCCGTCAAAATGATCTCGTCATCATAA
gi|11                         :               caccTTTTCCCGTAGAAAGGAAGGGGTGTGTCTATCCATGCTGAGATTTT--TAAGAACAACTTCCATTTT-CTCTTCCGCCATGTTCAGTATTCTTTCTC--TCAAAGAAACTTGTTGTTTAAAGC
gi|12                         :                    TTTCCCGTAGAAAGGAAGGGATGTGTCTATCCATGCTGAGATTTT--TAAGAACAACTTCGATTTT-CTCTTCCGCCATGTTCAATATTCTTTCTC--TCAAAGAAACTTGTTGTTTAAAGCc
gi|13                         :                     TTCCCGTAGAAAGGAAGGGGTGTGTCTATCCATGCTGAGATTTT--TAAGAACAACTTCCATTTT-CTCTTCCGCCATGTTCAGTATTCTTTCTC--TCAAAGAAACTTGTTGTTTAAAGCc
gi|14                         :                     TTCGCGTAGAAAGGAAGGGATGTGTCTATCCATGCTGAGATTTT--TAAGAACAACTTCCATTTT-CTCTTCTGCCATGTTCAATAGTCTTTCTC--TCAAAGAAACTTGTTGTTTAAAGCc
gi|15                         :                                                                              TCCATTTT-CTCTTCCGCCACGTTCAATATTCTTTCTG--TCAAAGAAGCTTGTTGTTTAAAGCGGTGTCGATATAGAAAT-CACCCAGTCAAACTGATCTCGTCATCATAAGGAAc
gi|16                         :                                                                                                                 CTA--TCAAAGAAGCTTGTTGTTTAAAGCGGTGTCAATATAGAAAA-CATCACGTCAAAATGATCTCGTCATCATA
gi|17                         : tttgttgaactttgttgttggatgaGTAGAAAGGAAGGGATGTGTCTATCCATGCTGAGATTTT--TAAGAACAACTTCCA-----------------GTTCAATATTCTTTCTC--TCAAAGAAACTTGTTGTTTAAAGC
gi|18                         :                        CCGTAGAAAGGAAGGGATGTGT-TATCCATGCTGAGATTTTGCTGAGAAAAACTTCCATTTT-CTCTTCCGCCATGTTCAATATTCTTTCT
gi|19                         :                                                                                                      tctaATTCTTTCTC--TCAAAGAAGCTTGTTGTTTAAACCGGTGTCAATATAGAAAT-CACCCCATCAAAATGATCTCGTCATCATAA
gi|2                          :                  TTTTTCCCGTTGAAAGGAAGGGACGTGTCTATCCACTCTGAGATTTT--AGAGAACAACTTTCATTTT-CTCTTCCGTCATGTGTAATATTCTTCCTG--TCAAAGAAGCTTGTTGTTTAAAGCGGTGTCAATATAGAAAT-CACCCAGTCAAACTGATCTCGTCATCATAA
gi|20                         :                                                                                                                                             CGGTGTCAGTATATAAAT-CACCCTGTCAAAATGATCTCGTCATCATAAGGAA
gi|21                         :                                                                                                                                             CGGTGTCAGTATATAAAT-CACCCCGTCAAAATGATCTCGTCATCATAAGGAA
gi|22                         :                                                                                                                                              GGTGTCAGTATATAAAT-CACCCCGTCAAAATGATCTCGTCATCATAAGGAA
gi|23                         :                                                                                                                                              GGTGTCAGTATATAAAT-CACCCCGTCAAAATGATCTCGTCATCATAAGGAA
gi|24                         :                                                                                                                                             CGGTGTCGGTATATAAAT-CACCCCGTCAAAATGATCTCGTCATC
gi|25                         :                                                                                                                                       ttgacaCGGTGTCGGTATATAAAT-CACCCCGTCAAAATGATCTCGTCATC
gi|26                         :                                                                                                                                          gacaGGTGTCAGTATATAAAT-CACCCCGTCAAAATGATATTGTCATCATAAG
gi|27                         :                                                                                                                                             CGGTGTCAGTATATAAAT-CACCCCATCAAAATGATCTCGTCATCATGA
gi|28                         :                                                                                                                                              GGTGTCAGTATATAAAT-CACCCCGTCAAAATGATCTCGTCATCATAA
gi|29                         :                                                                                                                                              GGTGTCAGTATATAAAT-CACCCCGTCAAAATGATCTCGTCA
gi|3                          :                    TTTCCCGTAGAAAGGAAATGATGTGTCTATCCATGCTGAGATTTT--TAATAACAACTTCCATTTTTCTCTTCCACCATGTTATATATTCTTTCTC--TCAAAGAAGCTTGTTGTTTAAAGCGGTGTCAATATAGAAAT-CACCCCGTCAAAATGATCTCGTCATCATAAactta
gi|30                         :                                                                                                                                                      TATAGAAAT-CACCCAGTCAAACTGATCTCGTCATAATAAGGAA
gi|31                         :                                                                                                                                             aGGTGTCAGTATATAAAT-CACCCCGTCAAAATGATATTGTCAT
gi|4                          :                   TTTTCCCGTAGAAAGGAAAGGATGTGTCTATCCACGCTGAGATTTT--AAAAAACAACTTCCATTTT-CTCTTCCGCCATTTTCAATATTGTTTCTC--TCAAAGAAACTTGTTGTTTAAAGCGGTGTCAATATAGAAAT-CACCTAATCAAACTGATCTCGTCA
gi|5                          :                        CCGTAGAAAGGAAGGAATGTGTCTATCCATGCTCAGATTTT--TAAGAACAACTTCCAT-------------CATGTCCAATATTCTTTATC--TCAAAGAAG-TAGTTGTTTAAAGCGGTGTCAATATAGTAAT-CACCCCGTCAAAACGATCTCGTCATCATAAGGAAggaag
gi|6                          :                     tctaCGTAGAAAGGAAGGGATGTGTCTATCCATGCTGAGATTTT--TAAGAACAACTTCCAT-------------CATGTTCTATATTCTTTTTC--TCAAAGAAGCGTGTTGTTTAAAGCAGTGTCAATATAGAAAT-CATCCCGTCAAAATGATCTCGTCATCATA
gi|7                          :                 atTTTTCCCGTATAAAGGAAGAGATGTATCTATCCATGCTGAGA---------------CTTCCATTT--------------GTTCAATGTTCTTTCTC--TCAAAGAAGCTTGTTGTTTAAAGCGTTGTCGATATAGAAAT-CACGACGTCAAAATGATCTCGTCATCATAAG
gi|8                          :                                                     TGCTGAGATTTT--TAAGAACAACTTCCATTTT-CTCTTCCGCCATGTTCAATATTCTTTCTC--TCAAATAAGCTTGTTGTTAAAACTTGTGTCAATATAGAAAT-CACCCCGTCAGAATGATCTCGTCATCATCAGGA
gi|9                          :                                                                                     T-TTCATCCGACATTTTGAATATT---TCCCGGTGAATGGA-CACATTAT--AAAGCGGTG-CAACCTCAAAATTCTCCTGGTCACAATGATCTCGTCATCATTAG