lowQualScore : 11 222222222222222222222 1111111 2 1 2222 44444444444 1111 111 2 2
lowQualScore : 3 44 7 2 2 0 999999999999999999999 8888888 66 6 3 77 5 1 0000 1 5 55555555555 5 8 77 4 4 3 1111 777 0 0 0 6 6 6
lowQualScore : . .. . . . . ..................... ....... .. . . .. . . .... . . ........... . . .. . . . .... ... . . . . . .
lowQualScore : 1 33 2 9 5 6 111111111111111111111 6666666 44 7 7 99 7 7 6666 4 0 00000000000 0 4 00 4 4 7 0000 111 8 0 0 0 0 0
consensus : GTTTAAA-CTTATTTATTTTAC-ATCGATTGTGAAACAAGT-TCTTACAACTTAGGCAAATTNCGCTCGAAGTCTTTCTGGATAGAACCAGTACTA-------AG-CGTATGCGGATAAAGTG--TCTTGCTCA-AGGACACCACACATAGCCGTGGC-GGAGGATCGAA-C---CA-----CGACCCTCC-GATCNTGGGTTCGGTGCTCTACC-AC-TGGACCACGC-GCTCCA-CTGTAATAACTCTATACCGTATT
Reference ( gi|1 ) : GTTTAAA-CTTATTTATTTTAC-TTCAGTTGTGAAACAAGT-TCTTACAACTTAGGCAAATCCCGCTCGAAGTCTTCCTGGATAGAACCAGTACTA-------AG-CATATGCGGA-AAAGTG--TCTTGCTCA-AGGACACCACACGTAGCCGTTAC-GGAGGATCGAA-C---CAT----TGACCCTCC-GATCATGGGTTCAGTGCTCTACC-AC-TGAACCATGT-GCTCCA-CTGTAATAA-TCT-TACTGCACTTCCACAAAAATAATTATTTTTATTGTTTGTTGTTGCCAAAATGTCGGATATATCCGACGTTTC
gi|3 : GTTTAAA-CTTATTTATTTTAC-TTTGATTGTGAAATAAGT-TATTACAACTTAGACAAATCACACTCGA-GTCTTCCTGGTTAGAACCAGTACTA--------------TGCAGA-AAAATG--TCTTGCTCA-AGGACATCACACATAGCTGTGGT-GGAGGATCGAA-C---CCG----AGACCCTCT-TATCATGGGTTCGGTTCTCTACC-AC-TGGACCACAA-GCTCCA-C
gi|4 : tcacgtattgtgtttattgttctgtGTTTAAA-CTTATTTATTTTAC-ATCGATTGTGAAACAAGT-TCTTACAAATAAGGCAAATCACGCTCGGA--------------AACTAGTACTA-------AG-CATATGCGGATAAAGTG--TCGTGCTCA-AGGACACCACCCATAGCCGTGGC-GGAGAATCGAC-C---CA-----CGACCCTCC-GATCATGGGCTATGTGCTCTACA-AC-TGGACCAAGC-GATCCA-Cctgaaaaatactttaatatgggg
gi|25 : gttatgttatgctctattaGTTTAAA-CTTATTTATTTTAC-TTTGATTGTGAAACAAGattatttcaatgtatattaatatgg
gi|16 : taGTTAAAA-CGTATTTATTTTGT-ATCAATAG--AAGCACGT-TTTTACAACTTGTGCAAATTCTG-TTG----CTGTCTGGATAG
gi|19 : aGTTTAAA-CTT---TATTTTACATTTA-TTGTGAAACAAGT-TC
gi|17 : ttcatgttacagtaactgttgttaTTTAAATCTTATTTATTTTAC-ATCAATTGTG-GACAAGA-TTATAGAAATCGGGTAACTTTTGCTCAGTGTCTTTCT
gi|21 : TTTAAA-ATTATTTCTTTAAC-ATCGATTGCGAAACAAGT-TCT
gi|26 : aagtcagttatgtctatTTAAA-CTTATTCATTTTAC-ATTGATTGTGAAACAATT-TCT
gi|15 : TAAG-TTTATTTATTTTAC-ATCAATTGTGTAAGAAGTGTCTCGC----TAAG--AAT----------GT-TTGCTA---AGAACTGGTACTA-------AG-CAT
gi|2 : AA-TTCATTTATTTTAC-ATCGGTTGTGAAACAAGT-TGTCA----TTAGCCAAATATCACTCTAAGTACTCATG--TCGAA-CAATACgcacatataa
gi|20 : AA-TTTATATATTTTAC-ATCGATTTTGAAACAAGT-TATTACAAggctcaagtacgtttatcgtgatatcagggcctgggtggatggaacttgtactaagggtatgtgaatgaagtgtcttgctcaaggacgtcacttatagccgtggcggaggatcgaactcacgaccctccgatcctgggttcgaggttctatcacatgacatttcactccacataatatatttgaacataagaattaacatt
gi|24 : atgttaatcgttcattggAA-CTTATTTATTTTAC-ATCGACTATGAAATAAAG-TCTTACAa
gi|5 : -CTTGTTT--TATAC-ATTAATAGTGAATCAAGA-TCTTACATCTAACACAAATTACACTCAAAATCTTTCCAAGCAGACCCAGTACTA-------AG-CATATGTGGATAAAATG--TCTTACTCA-TGAACACAGCAC-TG---GTT---GGA-GATTGAATC---CATAACATGTTAGTCCAGAT------TCCAATGCTCTGCC-AT-TTCACAACGC-CTTCCA-C
gi|13 : aattttggTTATTTATTTTAC-ATTGAATGTGAAACAAGA-GTTTACAA
gi|14 : gtccactattcttAATTGTGAAACCAAT-TCTTACAACatgttgccacatctatccaatgcagatgaagtgttctgctcatgg
gi|8 : ttgtatctCTAGGTAGAACAATTACTA-------AG-AAAATGCGGC-AAA-TGGTTCTTCCCAA-AGGACACCCCACATAGCGGTTGC-GGAAGATCGAA-C---TGC----AGACTCTCT-GATCCTTGGTTCCTTGCTCTGCC-AC-TGGATCAGGC-ACTCCAGCTGcaacagaaccagtactagcttaccagacgtacgcagataaagtatctttctgaaggacac
gi|2 : aTGGATGGAACTTGTACTA-------AG-GGTATGTGAATGAAGTG--TCTTGCTCA-AGGACGTCACTTATAGCCGTGGC-GGAGGATCGAA-CT--CA-----CGACCCTCC-GATCCTGGGTTCGAGGTTCTATC-ACATGA--CATTTCACTCCA-C-ATAATAgttttatctgataatggggagtatg
gi|14 : aattcatttattttacatcggttgtgaaacaagttgtcattagccaaatatcactctaagtactcatgtcgaacaatacggctcaagtacgtttatcgtgatatcagggcctgggACAGAACCAGTACTAGCTTACCAGACGTACGCAGATAAAGTA--TCTTTCTGA-AGGACACtatttgaacataagaattaacatt
gi|10 : ttgtatctaattgtgaaaccaattcttacaaccaG--TCTTGCCCATAATATTCCACACAGGGTCCTGGCAGGGGGATCAAA-CACGCA-------GCCCTCT-GATCCCGGGTCCATCGGTCTACCTAT-TTAACCATGT-GCTTCA-C----ATAACTCT-T
gi|11 : GCCGTGGC-GGATGATCGAA-C---AAG----CGACCC-CC-GATCTTGGAT
gi|18 : atgacattactgattGGATCTAA-C---CCA----TGACCCTAT-GACCTTGGGTCCTATGATCTAAC-AC-TTGACCACAT-GCTCCATCTGTAactacgcaaaacttttgtttcaaatatatgattgagtttaattaatgtgcatg
gi|23 : ATCTTGGGTTCGGTGCTCTACC--C-TGGATCAAAC-ACTCCA-Cg
gi|22 : ATGGGCGCGGTGCTCTACC-AC-TGGACCATAC-GATCC----GCAATAA-TCTATACCGTATctgaaaagcccttagt
4 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|6 ): TTAGTTCAAGAAAGTTTACTTTACAATGTACATGAATTGTGAAATGATATTGCAACATACAAACATCTTGATACAGAACCTGGTATATGTACAGTGAGTGGATGTGGATAAAGTAACTTGTTTAAGGACCTATACTTGGTCCTGGTGGGGAATCTAACCCAGGACCCACCTATACCACTATGTGTCTCACATGGAT
Unaligned ( gi|7 ): TTTTGTTTTATTTTAGTTTAATGTTTAAAACTTACAAACATTATCTTACATCAATTGAGAAACGAGTGCTTACTGTTTACAAACTAGAAAAATTATGTCTTTTTTGGTCTTACCATGCAGATAAAGTGCTTTGTTCATGGTCGTGGCAGGAGACTGAACCAACAACCC
Unaligned ( gi|9 ): TGCTATGCAAATGTGGTTATAGTCCCTTGTTCAAGGGCAGTACACAGTGTCTTGGTGGGGGTTGTGACATGCAGCCCGCTGATCCTGGGTTATGTGCCTCACAGCTATACCAAGTGTCCCATA
Unaligned ( gi|12 ): ACCACGATCGCAGTGTTACCGGGTAAAACCATTACTATGCAGATTAAATGTTTTGTTTAACAAAATAACACATTGTCCCCTATTGCAGGGTCAAACTTAGAAACCTT
Alignments
lowQualScore : 333333333333333333 11111111 1111111111111111 11111111 11111 1
lowQualScore : 5 2 55555 33 2 2 0 77 777777777777777777 5 5555555 55555555 9999999999999999 2 66 1 4 1 1 0 4 8 88888888 2 1 0 4 5 33333 8 5 7
lowQualScore : . . ..... .. . . . .. .................. . ....... ........ ................ . .. . . . . . . . ........ . . . . . ..... . . .
lowQualScore : 0 4 99999 22 2 4 5 33 222222222222222222 1 3333333 55555555 4444444444444444 3 11 6 0 4 0 5 0 0 22222222 0 0 9 4 4 88888 0 0 3
consensus : GTTTAAA-CTTA-T-----TTAT--TTTACATC-GATTGTGAAACAAGT-TCTTACAACTTAGGCAAATCNCGCTCGAA-------GTCTTTCTGGATA--GAACC------A-GTAC--TA-------AG-CGTATGCGGATAAA--GTGTCTTGCTCA-AGGACACCACACATAGCCGTGGC-GGAGGATCGAA-C-C-A-C--GACCCTCCGATCCTGGGTTCGGTGCTCTACC-ACTGGACCACGCGCTCCA-CTGTAATA-ACTCTATACCGCACT
Reference ( family-2335 ) : GTTTAAA-CTTA-T-----TTAT--TTTACATC-GATTGTGAAACAAGT-TCTTACAACTTAGGCAAATTNCGCTCGAA-------GTCTTTCTGGATA--GAACC------A-GTAC--TA-------AG-CGTATGCGGATAAA--GTGTCTTGCTCA-AGGACACCACACATAGCCGTGGC-GGAGGATCGAA-C-C-A-C--GACCCTCCGATCNTGGGTTCGGTGCTCTACC-ACTGGACCACGCGCTCCA-CTGTAATA-ACTCTATACCGTATT
gi|1 : GTTTAAA-CTTA-T-----TTAT--TTTACTTC-AGTTGTGAAACAAGT-TCTTACAACTTAGGCAAATCCCGCTCGAA-------GTCTTCCTGGATA--GAACC------A-GTAC--TA-------AG-CATATGCGGA-AAA--GTGTCTTGCTCA-AGGACACCACACGTAGCCGTTAC-GGAGGATCGAA-C-C-ATT--GACCCTCCGATCATGGGTTCAGTGCTCTACC-ACTGAACCATGTGCTCCA-CTGTAATA-A-TCT-TACTGCACT
gi|10 : GTCTTGCCCATAATATTCCACACAGGGTCCTGGCAGGGGGATCAAA-CAC-G-C--AGCCCTCTGATCCCGGGTCCATCGGTCTACCTATTTAACCATGTGCTTCA-C----ATA-ACTCTtccacaaaaataattatttttattgtttgttgttgccaaaatgtcggatatatccgacgtttc
gi|11 : GACATTACTGATTGCCGTGGC-GGATGATCGAA-C-A-AGC--GACCC-CCGATCTTGGATt
gi|13 : atTTA-T-----TTAT--TTTACATT-GAATGTGAAACAAGA-GTTTACAAactacgcaaaacttttgtttcaaatatatgattgagtttaattaatgtgcatg
gi|14 : gtccactattcttTTGTATCTAATTGTGAAACCAAT-TCTTACAACatgttgccacatctatccaatgcagatgaagtgttctgctcatgg
gi|14 : ACA--GAACC------A-GTAC--TAGCTTACCAGACGTACGCAGATAAA--GTATCTTTCTGA-AGGACACcaacagaaccagtactagcttaccagacgtacgcagataaagtatctttctgaaggacac
gi|15 : ttgtatctaattgtgaaaccaattcttacaaccaTAAG-TTTA-T-----TTAT--TTTACATC-AATTGTGTAAGAAGTGTCTCGC----TAAG--AAT-----------------GT-TTGCTA---A--GAACT------G-GTAC--TA-------AG-C--ATGCACATA
gi|16 : GTTAAAA-CGTA-T-----TTAT--TTTGTATC-AATAG--AAGCACGT-TTTTACAACTTGTGCAAATTCTG-TTG-----------CTGTCTGGATA--Gtaa
gi|17 : aTTTAAATCTTA-T-----TTAT--TTTACATC-AATTGTG-GACAAGA-TTATAGAAATCGGGTAACTTTTGCTCAGT-------GTCTTTCT
gi|19 : GTTTAAA-CTT---------TAT--TTTACATT-TATTGTGAAACAAGT-TC
gi|2 : ttcatgttacagtaactgttgttaAA-TTCA-T-----TTAT--TTTACATC-GGTTGTGAAACAAGT-TGTCA----TTAGCCAAATATCACTCTAA-------GT
gi|2 : TGGATG--GAACT------T-GTAC--TA-------AG-GGTATGTGAATGAA--GTGTCTTGCTCA-AGGACGTCACTTATAGCCGTGGC-GGAGGATCGAA-CTC-A-C--GACCCTCCGATCCTGGGTTCGAGGTTCTATC-ACATGACATTTCACTCCA-C-ATAATA-actcatgtcgaacaatacggctcaagtacgtttatcgtgatatcagggcctgggtggatggaacttgtactaagggtatgtgaatgaagtgtcttgctcaaggacgtcacttatagccgtggcggaggatcgaactcacgaccctccgatcctgggttcgaggttctatcacatgacatttcactccacataatatatttgaacataagaattaacatt
gi|20 : aattcatttattttacatcggttgtgaaacaagttgtcattagccaaatatcactctaagtactcatgtcgaacaatacggctcaagtacgtttatcgtgatatcagggcctgggAA-TTTA-T-----ATAT--TTTACATC-GATTTTGAAACAAGT-TATTACAAtatttgaacataagaattaacatt
gi|21 : atgttaatcgttcattggTTTAAA-ATTA-T-----TTCT--TTAACATC-GATTGCGAAACAAGT-TCTa
gi|22 : aagtcagttatgtctatTGGGCGCGGTGCTCTACC-ACTGGACCATACGATCC----GCAATA-A-TCTATACCGTATT
gi|23 : aATCTTGGGTTCGGTGCTCTACC--CTGGATCAAACACTCCA-C
gi|24 : AA-CTTA-T-----TTAT--TTTACATC-GACTATGAAATAAAG-TCTTACActgaaaagcccttagt
gi|25 : GTTTAAA-CTTA-T-----TTAT--TTTACTTT-GATTGTGAAACAAG
gi|26 : taTTAAA-CTTA-T-----TCAT--TTTACATT-GATTGTGAAACAATT-TCT
gi|3 : GTTTAAA-CTTA-T-----TTAT--TTTACTTT-GATTGTGAAATAAGT-TATTACAACTTAGACAAATCACACTCG-A-------GTCTTCCTGGTTA--GAACC------A-GTAC----------------TATGCAGA-AAA--ATGTCTTGCTCA-AGGACATCACACATAGCTGTGGT-GGAGGATCGAA-C-C---CGAGACCCTCTTATCATGGGTTCGGTTCTCTACC-ACTGGACCACAAGCTCCACCTGAAAAATACTTTA
gi|4 : tcacgtattgtgtttattgttctgtGTTTAAA-CTTA-T-----TTAT--TTTACATC-GATTGTGAAACAAGT-TCTTACAAATAAGGCAAATCACGCTCGGA-----------------------AACT------A-GTAC--TA-------AG-CATATGCGGATAAA--GTGTCGTGCTCA-AGGACACCACCCATAGCCGTGGC-GGAGAATCGAC-C-C-A-C--GACCCTCCGATCATGGGCTATGTGCTCTACA-ACTGGACCAAGCGATCCA-Catatgggg
gi|5 : gttatgttatgctctatta-CTTG-T-----TT----TATACATT-AATAGTGAATCAAGA-TCTTACATCTAACACAAATTACACTCAAA-------ATCTTTCCAAGCA--GACCC------A-GTAC--TA-------AG-CATATGTGGATAAA--ATGTCTTACTCA-TGAACACAGCAC-------TGGT-TGGAGATTGAATC-C-A-T--AACATGTTAGTCCAGATTCCAATGCTCTGCC-ATTTCACAACGCCTTCCA-Cattatttcaatgtatattaatatgg
gi|6 : aattttggAAG-TTTACT-----TTACAATGTACATG-AATTGTGAAATGA---TATTGCAACATA--CAAAC-----------------ATCTT----GATACAGAACCTGGTATATGTACAGTG-------AG-TGGATGTGGATAAA--GTAACTTGTTTA-AGGAC-CTATACTTGGTCCTGGT-GGGGAATCTAACC-C-A-G--GACCCACCTAT
gi|7 : ttagttcaagaGTTTAAAACTTA-CAAACATTAT--CTTACATC-AATTGAGAAACGAGT-GCTTACTGTTTA--CAAA-----CTAGAAAAATTATGTCTTTTTTGGT------CT---------TAC----------------CATGCAGATAAA--GTGCTTTGTT--------------CATGGTCGTGGC-AGGAGACTGAA-C-CAA-C--AACCCaccactatgtgtctcacatggat
gi|8 : ttttgttttattttagtttaatCTAGGTA--GAACA------A-TTAC--TA-------AG-AAAATGCGG-CAAATGGT-TCTTCCCAA-AGGACACCCCACATAGCGGTTGC-GGAAGATCGAA-C-T-G-CA-GACTCTCTGATCCTTGGTTCCTTGCTCTGCC-ACTGGATCAGGCACTCCAGCTG
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|9 ): TGCTATGCAAATGTGGTTATAGTCCCTTGTTCAAGGGCAGTACACAGTGTCTTGGTGGGGGTTGTGACATGCAGCCCGCTGATCCTGGGTTATGTGCCTCACAGCTATACCAAGTGTCCCATA
Unaligned ( gi|12 ): ACCACGATCGCAGTGTTACCGGGTAAAACCATTACTATGCAGATTAAATGTTTTGTTTAACAAAATAACACATTGTCCCCTATTGCAGGGTCAAACTTAGAAACCTT
Unaligned ( gi|18 ): GGATCTAACCCATGACCCTATGACCTTGGGTCCTATGATCTAACACTTGACCACATGCTCCATCTGTAG
Alignments
lowQualScore : 11 2222222222 11111111 11111111111111111 11111111 11111 1
lowQualScore : 5 2 55555 33 2 0 0 0 00 3333 2222222222 66 5555555 55555555 77777777777777777 1 55 0 3 0 0 2 3 3 7 55555555 55 3 0 2 4 6 22222 8 5 7
lowQualScore : . . ..... .. . . . . .. .... .......... .. ....... ........ ................. . .. . . . . . . . . ........ .. . . . . . ..... . . .
lowQualScore : 0 4 99999 22 2 2 5 1 77 7777 3333333333 44 3333333 55555555 77777777777777777 3 55 5 6 5 1 0 6 6 3 44444444 00 3 7 3 0 4 99999 0 0 3
consensus : GTTTAAA-CTTA-T-----TTAT--TTTACATC-GATTGTGAAACAAGTTCTTACAACTTAGGCAAATCNCGCTCGGA-------GTCTTT-CTGGATA--GAACC------A-GTAC--TA-------AG-CGTATGCGGATAAA--GTGTCTTGCTCA-AGGACACCACACATAGCCGTGGC-GGGGGAT-CGAA-C-C-A-C--G--ACCCTCCGATCCTGGGTTCGGTGCTCTACC-ACTGGACCANGCGCTCCA-CTGTAATA-ACTCTATACCGCACT
Reference ( family-2335 ) : GTTTAAA-CTTA-T-----TTAT--TTTACATC-GATTGTGAAACAAGTTCTTACAACTTAGGCAAATCNCGCTCGAA-------GTCTTT-CTGGATA--GAACC------A-GTAC--TA-------AG-CGTATGCGGATAAA--GTGTCTTGCTCA-AGGACACCACACATAGCCGTGGC-GGAGGAT-CGAA-C-C-A-C--G--ACCCTCCGATCCTGGGTTCGGTGCTCTACC-ACTGGACCACGCGCTCCA-CTGTAATA-ACTCTATACCGCACT
gi|1 : GTTTAAA-CTTA-T-----TTAT--TTTACTTC-AGTTGTGAAACAAGTTCTTACAACTTAGGCAAATCCCGCTCGAA-------GTCTTC-CTGGATA--GAACC------A-GTAC--TA-------AG-CATATGCGGA-AAA--GTGTCTTGCTCA-AGGACACCACACGTAGCCGTTAC-GGAGGAT-CGAA-C-C-ATT--G--ACCCTCCGATCATGGGTTCAGTGCTCTACC-ACTGAACCATGTGCTCCA-CTGTAATA-A-TCT-TACTGCACT
gi|10 : GTCTTGCCCATAATATTCCACACAGGGTCCTGGCAGGGGGAT-CAAA-CAC-G-C--A--GCCCTCTGATCCCGGGTCCATCGGTCTACCTATTTAACCATGTGCTTCA-C----ATA-ACTCTtccacaaaaataattatttttattgtttgttgttgccaaaatgtcggatatatccgacgtttc
gi|11 : GACATTACTGATTGCCGTGGC-GGATGAT-CGAA-C-A-AGC--G--ACCC-CCGATCTTGGATt
gi|13 : atTTA-T-----TTAT--TTTACATT-GAATGTGAAACAAGAGTTTACAAactacgcaaaacttttgtttcaaatatatgattgagtttaattaatgtgcatg
gi|14 : gtccactattcttTTGTATCTAATTGTGAAACCAATTCTTACAACatgttgccacatctatccaatgcagatgaagtgttctgctcatgg
gi|14 : ACA--GAACC------A-GTAC--TAGCTTACCAGACGTACGCAGATAAA--GTATCTTTCTGA-AGGACACcaacagaaccagtactagcttaccagacgtacgcagataaagtatctttctgaaggacac
gi|15 : ttgtatctaattgtgaaaccaattcttacaaccaTAAG-TTTA-T-----TTAT--TTTACATC-AATTGTGTAAGAAGT-----------------GTCTCGCTAAGA-------ATGTTTGCTA---A--GAACT------G-GTAC--TA-------AG-C--ATGCACATA
gi|16 : GTTAAAA-CGTA-T-----TTAT--TTTGTATC-AATAG--AAGCACGTTTTTACAACTTGTGCAAATTCTG-TTG-----------CTGT-CTGGATA--Gtaa
gi|17 : aTTTAAATCTTA-T-----TTAT--TTTACATC-AATTGTG-GACAAGATTATAGAAATCGGGTAACTTTTGCTCAGT-------GTCTTT-CT
gi|19 : GTTTAAA-CTT---------TAT--TTTACATT-TATTGTGAAACAAGTTC
gi|2 : ttcatgttacagtaactgttgttaAA-TTCA-T-----TTAT--TTTACATC-GGTTGTGAAACAAGTTGTCA----TTAGCCAAATATCACTCTAA-------GT
gi|2 : TGGATG--GAACT------T-GTAC--TA-------AG-GGTATGTGAATGAA--GTGTCTTGCTCA-AGGACGTCACTTATAGCCGTGGC-GGAGGAT-CGAA-CTC-A-C--G--ACCCTCCGATCCTGGGTTCGAGGTTCTATC-ACATGACATTTCACTCCA-C-ATAATA-actcatgtcgaacaatacggctcaagtacgtttatcgtgatatcagggcctgggtggatggaacttgtactaagggtatgtgaatgaagtgtcttgctcaaggacgtcacttatagccgtggcggaggatcgaactcacgaccctccgatcctgggttcgaggttctatcacatgacatttcactccacataatatatttgaacataagaattaacatt
gi|20 : aattcatttattttacatcggttgtgaaacaagttgtcattagccaaatatcactctaagtactcatgtcgaacaatacggctcaagtacgtttatcgtgatatcagggcctgggAA-TTTA-T-----ATAT--TTTACATC-GATTTTGAAACAAGTTATTACAAtatttgaacataagaattaacatt
gi|21 : atgttaatcgttcattggTTTAAA-ATTA-T-----TTCT--TTAACATC-GATTGCGAAACAAGTTCTa
gi|22 : aagtcagttatgtctatTGGGCGCGGTGCTCTACC-ACTGGACCATACGATCC----GCAATA-A-TCTATACCGTATT
gi|23 : aATCTTGGGTTCGGTGCTCTACC--CTGGATCAAACACTCCA-C
gi|24 : AA-CTTA-T-----TTAT--TTTACATC-GACTATGAAATAAAGTCTTACActgaaaagcccttagt
gi|25 : GTTTAAA-CTTA-T-----TTAT--TTTACTTT-GATTGTGAAACAAG
gi|26 : taTTAAA-CTTA-T-----TCAT--TTTACATT-GATTGTGAAACAATTTCT
gi|3 : GTTTAAA-CTTA-T-----TTAT--TTTACTTT-GATTGTGAAATAAGTTATTACAACTTAGACAAATCACACTCG-A-------GTCTTC-CTGGTTA--GAACC------A-GTAC----------------TATGCAGA-AAA--ATGTCTTGCTCA-AGGACATCACACATAGCTGTGGT-GGAGGAT-CGAA-C-C---CGAG--ACCCTCTTATCATGGGTTCGGTTCTCTACC-ACTGGACCACAAGCTCCACCTGAAAAATACTTTA
gi|4 : tcacgtattgtgtttattgttctgtGTTTAAA-CTTA-T-----TTAT--TTTACATC-GATTGTGAAACAAGTTCTTACAAATAAGGCAAATCACGCTCGGA------------------------AACT------A-GTAC--TA-------AG-CATATGCGGATAAA--GTGTCGTGCTCA-AGGACACCACCCATAGCCGTGGC-GGAGAAT-CGAC-C-C-A-C--G--ACCCTCCGATCATGGGCTATGTGCTCTACA-ACTGGACCAAGCGATCCA-Catatgggg
gi|5 : gttatgttatgctctatta-CTTG-T-----TT----TATACATT-AATAGTGAATCAAGATCTTACATCTAACACAAATTACACTCAAA-------ATCTTT-CCAAGCA--GACCC------A-GTAC--TA-------AG-CATATGTGGATAAA--ATGTCTTACTCA-TGAACACAGCAC-------TGGT-TGGAGAT-TGAATC-C-A-T--A--ACATGTTAGTCCAGATTCCAATGCTCTGCC-ATTTCACAACGCCTTCCA-Cattatttcaatgtatattaatatgg
gi|6 : aattttggAAG-TTTACT-----TTACAATGTACATG-AATTGTGAAATGA--TATTGCAACATA--CAAA-CA----------------TCTT-----GATACAGAACCTGGTATATGTACAGTG-------AG-TGGATGTGGATAAA--GTAACTTGTTTA-AGGAC-CTATACTTGGTCCTGGT-GGGGAAT-CTAACC-C-A-G--G--ACCCACCTAT
gi|7 : ttagttcaagaGTTTAAAACTTA-CAAACATTAT--CTTACATC-AATTGAGAAACGAGTGCTTACTGTTTA--CAAA-----CTAGAAAAATTATGTCTTT-TTTGGT------CT---------TAC----------------CATGCAGATAAA--GTGCTTTGTT--------------CATGGTCGTGGC-AGGAGAC-TGAA-C-CAA-C--A--ACCCaccactatgtgtctcacatggat
gi|8 : ttttgttttattttagtttaat-CTAGGTA--GAACA------A-TTAC--TA-------AG-AAAATGCGG-CAAATGGT-TCTTCCCAA-AGGACACCCCACATAGCGGTTGC-GGAAGAT-CGAA-C-T-G-CA-G--ACTCTCTGATCCTTGGTTCCTTGCTCTGCC-ACTGGATCAGGCACTCCAGCTG
gi|9 : aTGC--TA-------TG-CAAATGTGGTTATA--GTCCCTTGTTCA-AGGGCAGTACACAGTGTCTTGGT-GGGGGTTGTGA----C-A-T--GCAGCCCGCTGATCCTGGGTTATGTGCCTCACA-GCTATACCAAGTGTCCCA-gttttatctgataatggggagtatg
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|12 ): ACCACGATCGCAGTGTTACCGGGTAAAACCATTACTATGCAGATTAAATGTTTTGTTTAACAAAATAACACATTGTCCCCTATTGCAGGGTCAAACTTAGAAACCTT
Unaligned ( gi|18 ): GGATCTAACCCATGACCCTATGACCTTGGGTCCTATGATCTAACACTTGACCACATGCTCCATCTGTAG
Alignments
lowQualScore : 111111 22222222222222222222 11111111 11111 1
lowQualScore : 5 2 55555 33 2 0 222222 666666 3 44 00000000000000000000 0 55 55 666 888 1 55 0 3 0 0 2 3 3 7 55555555 55 3 0 2 4 1 22222 8 5 7
lowQualScore : . . ..... .. . . ...... ...... . .. .................... . .. .. ... ... . .. . . . . . . . . ........ .. . . . . . ..... . . .
lowQualScore : 0 4 99999 22 2 2 555555 444444 6 55 00000000000000000000 9 44 00 333 444 3 55 5 6 5 1 0 6 6 3 44444444 00 3 7 3 0 0 99999 0 0 3
consensus : GTTTAAA-CTTA-T-----TTAT--TTTACATC-GATTGTGAAACAAGTTCTTACAACTTAGGCAA--ATCNCGCT-CGGA-------GTCTTT-CTGG-GTAGAACTAG--TAC--TAAGCGTATGCGGATAAA--GTGTCTTGCTCA-AGGACACCACACATAGCCGTGGC-GGGGGAT-CGAA-C-C-A-C--G--ACCCTCCGATCCTGGGTTCGGTGCTCTACC-ACTGGACCANGCGCTCCA-CTGTAATA-ACTCTATACCGCACT
Reference ( family-2335 ) : GTTTAAA-CTTA-T-----TTAT--TTTACATC-GATTGTGAAACAAGTTCTTACAACTTAGGCAA--ATCNCGCT-CGGA-------GTCTTT-CTGG-ATAGAACCAG--TAC--TAAGCGTATGCGGATAAA--GTGTCTTGCTCA-AGGACACCACACATAGCCGTGGC-GGGGGAT-CGAA-C-C-A-C--G--ACCCTCCGATCCTGGGTTCGGTGCTCTACC-ACTGGACCANGCGCTCCA-CTGTAATA-ACTCTATACCGCACT
gi|1 : GTTTAAA-CTTA-T-----TTAT--TTTACTTC-AGTTGTGAAACAAGTTCTTACAACTTAGGCAA--ATCCCGCT-CGAA-------GTCTTC-CTGG-ATAGAACCAG--TAC--TAAGCATATGCGGA-AAA--GTGTCTTGCTCA-AGGACACCACACGTAGCCGTTAC-GGAGGAT-CGAA-C-C-ATT--G--ACCCTCCGATCATGGGTTCAGTGCTCTACC-ACTGAACCATGTGCTCCA-CTGTAATA-A-TCT-TACTGCACT
gi|10 : GTCTTGCCCATAATATTCCACACAGGGTCCTGGCAGGGGGAT-CAAA-CAC-G-C--A--GCCCTCTGATCCCGGGTCCATCGGTCTACCTATTTAACCATGTGCTTCA-C----ATA-ACTCTtccacaaaaataattatttttattgtttgttgttgccaaaatgtcggatatatccgacgtttc
gi|11 : GACATTACTGATTGCCGTGGC-GGATGAT-CGAA-C-A-AGC--G--ACCC-CCGATCTTGGATt
gi|13 : atTTA-T-----TTAT--TTTACATT-GAATGTGAAACAAGAGTTTACAAactacgcaaaacttttgtttcaaatatatgattgagtttaattaatgtgcatg
gi|14 : gtccactattcttTTGTATCTAATTGTGAAACCAATTCTTACAAC-----CAA-----------CAGA-------ACC-----------AGTACTAGCTTAC--CAGACGTACGCAGATAAA--GTATCTTTCTGA-AGGACACatgttgccacatctatccaatgcagatgaagtgttctgctcatgg
gi|15 : TAAG-TTTA-T-----TTAT--TTTACATC-AATTGTGTAAGAAGT-------------------GTCTCGCT-AAGA-------ATGTTTGCTA----AGAACTGG--TAC--TAAGC--ATGCACATA
gi|16 : GTTAAAA-CGTA-T-----TTAT--TTTGTATC-AATAG--AAGCACGTTTTTACAACTTGTGCAA--ATTCTG-T-TG-----------CTGT-CTGG-ATAGtaa
gi|17 : aTTTAAATCTTA-T-----TTAT--TTTACATC-AATTGTG-GACAAGATTATAGAAATCGGGTAA--CTTTTGCT-CAGT-------GTCTTT-CT
gi|19 : GTTTAAA-CTT---------TAT--TTTACATT-TATTGTGAAACAAGTTC
gi|2 : ttcatgttacagtaactgttgttaAA-TTCA-T-----TTAT--TTTACATC-GGTTGTGAAACAAGTTGTCA----TTAGCCAA--ATATCACT-CTAA-------GT
gi|2 : TGG-ATGGAACTTG--TAC--TAAGGGTATGTGAATGAA--GTGTCTTGCTCA-AGGACGTCACTTATAGCCGTGGC-GGAGGAT-CGAA-CTC-A-C--G--ACCCTCCGATCCTGGGTTCGAGGTTCTATC-ACATGACATTTCACTCCA-C-ATAATA-actcatgtcgaacaatacggctcaagtacgtttatcgtgatatcagggcctgggtggatggaacttgtactaagggtatgtgaatgaagtgtcttgctcaaggacgtcacttatagccgtggcggaggatcgaactcacgaccctccgatcctgggttcgaggttctatcacatgacatttcactccacataatatatttgaacataagaattaacatt
gi|20 : aattcatttattttacatcggttgtgaaacaagttgtcattagccaaatatcactctaagtactcatgtcgaacaatacggctcaagtacgtttatcgtgatatcagggcctgggAA-TTTA-T-----ATAT--TTTACATC-GATTTTGAAACAAGTTATTACAAtatttgaacataagaattaacatt
gi|21 : atgttaatcgttcattggTTTAAA-ATTA-T-----TTCT--TTAACATC-GATTGCGAAACAAGTTCTa
gi|22 : aagtcagttatgtctatTGGGCGCGGTGCTCTACC-ACTGGACCATACGATCC----GCAATA-A-TCTATACCGTATT
gi|23 : aATCTTGGGTTCGGTGCTCTACC--CTGGATCAAACACTCCA-C
gi|24 : AA-CTTA-T-----TTAT--TTTACATC-GACTATGAAATAAAGTCTTACActgaaaagcccttagt
gi|25 : GTTTAAA-CTTA-T-----TTAT--TTTACTTT-GATTGTGAAACAAG
gi|26 : taTTAAA-CTTA-T-----TCAT--TTTACATT-GATTGTGAAACAATTTCT
gi|3 : GTTTAAA-CTTA-T-----TTAT--TTTACTTT-GATTGTGAAATAAGTTATTACAACTTAGACAA--ATCACACT-C-GA-------GTCTTC-CTGG-TTAGAACCAG--TAC--------TATGCAGA-AAA--ATGTCTTGCTCA-AGGACATCACACATAGCTGTGGT-GGAGGAT-CGAA-C-C---CGAG--ACCCTCTTATCATGGGTTCGGTTCTCTACC-ACTGGACCACAAGCTCCACCTGAAAAATACTTTA
gi|4 : tcacgtattgtgtttattgttctgtGTTTAAA-CTTA-T-----TTAT--TTTACATC-GATTGTGAAACAAGTTCTTACAAATAAGGCAA--ATCACGCT-CGGA-----------------------AACTAG--TAC--TAAGCATATGCGGATAAA--GTGTCGTGCTCA-AGGACACCACCCATAGCCGTGGC-GGAGAAT-CGAC-C-C-A-C--G--ACCCTCCGATCATGGGCTATGTGCTCTACA-ACTGGACCAAGCGATCCA-Catatgggg
gi|5 : gttatgttatgctctatta-CTTG-T-----TT----TATACATT-AATAGTGAATCAAGATCTTACATCTAACACAA--ATTACACT-CAAA-------ATCTTT-CCAA-GCAGACCCAG--TAC--TAAGCATATGTGGATAAA--ATGTCTTACTCA-TGAACACAGCAC-------TGGT-TGGAGAT-TGAATC-C-A-T--A--ACATGTTAGTCCAGATTCCAATGCTCTGCC-ATTTCACAACGCCTTCCA-Cattatttcaatgtatattaatatgg
gi|6 : aattttggAAG-TTTACT-----TTACAATGTACATG-AATTGTGAAATGA--TATTGCAACATA--CAAACATCTTGATACAGA-------A----C-CTGGTATAT-----G--TACAGTGAGTGGATGTGGATAAA--GTAACTTGTTTA-AGGAC-CTATACTTGGTCCTGGT-GGGGAAT-CTAACC-C-A-G--G--ACCCACCTAT
gi|7 : ttagttcaagaGTTTAAAACTTA-CAAACATTAT--CTTACATC-AATTGAGAAACGAGTGCTTACTGTTTA--CAA--A-----CT-AGAAAAATTATGTCTTT-TTTG-GT----CT----TAC--------CATGCAGATAAA--GTGCTTTGTT--------------CATGGTCGTGGC-AGGAGAC-TGAA-C-CAA-C--A--ACCCaccactatgtgtctcacatggat
gi|8 : ttttgttttattttagtttaat-CTAG-GTAGAACAAT--TAC--TAAGAAAATGCGG-CAAATGGT-TCTTCCCAA-AGGACACCCCACATAGCGGTTGC-GGAAGAT-CGAA-C-T-G-CA-G--ACTCTCTGATCCTTGGTTCCTTGCTCTGCC-ACTGGATCAGGCACTCCAGCTG
gi|9 : a--TGC--TATGCAAATGTGGTTATA--GTCCCTTGTTCA-AGGGCAGTACACAGTGTCTTGGT-GGGGGTTGTGA----C-A-T--GCAGCCCGCTGATCCTGGGTTATGTGCCTCACA-GCTATACCAAGTGTCCCA-gttttatctgataatggggagtatg
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|12 ): ACCACGATCGCAGTGTTACCGGGTAAAACCATTACTATGCAGATTAAATGTTTTGTTTAACAAAATAACACATTGTCCCCTATTGCAGGGTCAAACTTAGAAACCTT
Unaligned ( gi|18 ): GGATCTAACCCATGACCCTATGACCTTGGGTCCTATGATCTAACACTTGACCACATGCTCCATCTGTAG
Alignments
lowQualScore : 111111 1111111111111111111 11111111 11111 1
lowQualScore : 5 2 55555 33 2 0 222222 77777 3 44 7777777777777777777 4 55 666 888 1 55 0 3 0 0 2 3 3 7 55555555 55 3 0 2 4 1 22222 8 5 7
lowQualScore : . . ..... .. . . ...... ..... . .. ................... . .. ... ... . .. . . . . . . . . ........ .. . . . . . ..... . . .
lowQualScore : 0 4 99999 22 2 2 555555 44444 6 55 8888888888888888888 0 00 333 444 3 55 5 6 5 1 0 6 6 3 44444444 00 3 7 3 0 0 99999 0 0 3
consensus : GTTTAAA-CTTA-T-----TTAT--TTTACATC-GATTGTGAAACAAGTTCTTACAACTTAGGCAAA--TCNCGCT-CGGA-------GTCTTT-CTGGGTAGAACTA-G--TAC--TAAGCGTATGCGGATAAA--GTGTCTTGCTCA-AGGACACCACACATAGCCGTGGC-GGGGGAT-CGAA-C-C-A-C--G--ACCCTCCGATCCTGGGTTCGGTGCTCTACC-ACTGGACCANGCGCTCCA-CTGTAATA-ACTCTATACCGCACT
Reference ( family-2335 ) : GTTTAAA-CTTA-T-----TTAT--TTTACATC-GATTGTGAAACAAGTTCTTACAACTTAGGCAAA--TCNCGCT-CGGA-------GTCTTT-CTGGGTAGAACTA-G--TAC--TAAGCGTATGCGGATAAA--GTGTCTTGCTCA-AGGACACCACACATAGCCGTGGC-GGGGGAT-CGAA-C-C-A-C--G--ACCCTCCGATCCTGGGTTCGGTGCTCTACC-ACTGGACCANGCGCTCCA-CTGTAATA-ACTCTATACCGCACT
gi|1 : GTTTAAA-CTTA-T-----TTAT--TTTACTTC-AGTTGTGAAACAAGTTCTTACAACTTAGGCAAA--TCCCGCT-CGAA-------GTCTTC-CTGGATAGAACCA-G--TAC--TAAGCATATGCGGA-AAA--GTGTCTTGCTCA-AGGACACCACACGTAGCCGTTAC-GGAGGAT-CGAA-C-C-ATT--G--ACCCTCCGATCATGGGTTCAGTGCTCTACC-ACTGAACCATGTGCTCCA-CTGTAATA-A-TCT-TACTGCACT
gi|10 : GTCTTGCCCATAATATTCCACACAGGGTCCTGGCAGGGGGAT-CAAA-CAC-G-C--A--GCCCTCTGATCCCGGGTCCATCGGTCTACCTATTTAACCATGTGCTTCA-C----ATA-ACTCTtccacaaaaataattatttttattgtttgttgttgccaaaatgtcggatatatccgacgtttc
gi|11 : GACATTACTGATTGCCGTGGC-GGATGAT-CGAA-C-A-AGC--G--ACCC-CCGATCTTGGATt
gi|13 : atTTA-T-----TTAT--TTTACATT-GAATGTGAAACAAGAGTTTACAAactacgcaaaacttttgtttcaaatatatgattgagtttaattaatgtgcatg
gi|14 : gtccactattcttTTGTATCTAATTGTGAAACCAATTCTTACAAC-----CAA-----------CAGA-------ACC----------AGTACTA-GCTTAC--CAGACGTACGCAGATAAA--GTATCTTTCTGA-AGGACACatgttgccacatctatccaatgcagatgaagtgttctgctcatgg
gi|15 : TAAG-TTTA-T-----TTAT--TTTACATC-AATTGTGTAAGAAGT-----------------G--TCTCGCT-AAGA-------ATGTTTGCTA---AGAACTG-G--TAC--TAAGC--ATGCACATA
gi|16 : GTTAAAA-CGTA-T-----TTAT--TTTGTATC-AATAG--AAGCACGTTTTTACAACTTGTGCAAA--TTCTG-T-TG-----------CTGT-CTGGATAGtaa
gi|17 : aTTTAAATCTTA-T-----TTAT--TTTACATC-AATTGTG-GACAAGATTATAGAAATCGGGTAAC--TTTTGCT-CAGT-------GTCTTT-CT
gi|19 : GTTTAAA-CTT---------TAT--TTTACATT-TATTGTGAAACAAGTTC
gi|2 : ttcatgttacagtaactgttgttaAA-TTCA-T-----TTAT--TTTACATC-GGTTGTGAAACAAGTTGTCA----TTAGCCAAA--TATCACT-CTAA-------GT
gi|2 : TGGATGGAACTT-G--TAC--TAAGGGTATGTGAATGAA--GTGTCTTGCTCA-AGGACGTCACTTATAGCCGTGGC-GGAGGAT-CGAA-CTC-A-C--G--ACCCTCCGATCCTGGGTTCGAGGTTCTATC-ACATGACATTTCACTCCA-C-ATAATA-actcatgtcgaacaatacggctcaagtacgtttatcgtgatatcagggcctgggtggatggaacttgtactaagggtatgtgaatgaagtgtcttgctcaaggacgtcacttatagccgtggcggaggatcgaactcacgaccctccgatcctgggttcgaggttctatcacatgacatttcactccacataatatatttgaacataagaattaacatt
gi|20 : aattcatttattttacatcggttgtgaaacaagttgtcattagccaaatatcactctaagtactcatgtcgaacaatacggctcaagtacgtttatcgtgatatcagggcctgggAA-TTTA-T-----ATAT--TTTACATC-GATTTTGAAACAAGTTATTACAAtatttgaacataagaattaacatt
gi|21 : atgttaatcgttcattggTTTAAA-ATTA-T-----TTCT--TTAACATC-GATTGCGAAACAAGTTCTa
gi|22 : aagtcagttatgtctatTGGGCGCGGTGCTCTACC-ACTGGACCATACGATCC----GCAATA-A-TCTATACCGTATT
gi|23 : aATCTTGGGTTCGGTGCTCTACC--CTGGATCAAACACTCCA-C
gi|24 : AA-CTTA-T-----TTAT--TTTACATC-GACTATGAAATAAAGTCTTACActgaaaagcccttagt
gi|25 : GTTTAAA-CTTA-T-----TTAT--TTTACTTT-GATTGTGAAACAAG
gi|26 : taTTAAA-CTTA-T-----TCAT--TTTACATT-GATTGTGAAACAATTTCT
gi|3 : GTTTAAA-CTTA-T-----TTAT--TTTACTTT-GATTGTGAAATAAGTTATTACAACTTAGACAAA--TCACACT-C-GA-------GTCTTC-CTGGTTAGAACCA-G--TAC--------TATGCAGA-AAA--ATGTCTTGCTCA-AGGACATCACACATAGCTGTGGT-GGAGGAT-CGAA-C-C---CGAG--ACCCTCTTATCATGGGTTCGGTTCTCTACC-ACTGGACCACAAGCTCCACCTGAAAAATACTTTA
gi|4 : tcacgtattgtgtttattgttctgtGTTTAAA-CTTA-T-----TTAT--TTTACATC-GATTGTGAAACAAGTTCTTACAAATAAGGCAAA--TCACGCT-CGGA----------------------AACTA-G--TAC--TAAGCATATGCGGATAAA--GTGTCGTGCTCA-AGGACACCACCCATAGCCGTGGC-GGAGAAT-CGAC-C-C-A-C--G--ACCCTCCGATCATGGGCTATGTGCTCTACA-ACTGGACCAAGCGATCCA-Catatgggg
gi|5 : gttatgttatgctctatta-CTTG-T-----TT----TATACATT-AATAGTGAATCAAGATCTTACATCTAACACAAA--TTACACT-CAAA-------ATCTTT-CCAAGCAGACCCA-G--TAC--TAAGCATATGTGGATAAA--ATGTCTTACTCA-TGAACACAGCAC-------TGGT-TGGAGAT-TGAATC-C-A-T--A--ACATGTTAGTCCAGATTCCAATGCTCTGCC-ATTTCACAACGCCTTCCA-Cattatttcaatgtatattaatatgg
gi|6 : aattttggAAG-TTTACT-----TTACAATGTACATG-AATTGTGAAATGA--TATTGCAACATA--CAAACATCTTGATACAGA-------ACCT------GGTA----TATG--TACAGTGAGTGGATGTGGATAAA--GTAACTTGTTTA-AGGAC-CTATACTTGGTCCTGGT-GGGGAAT-CTAACC-C-A-G--G--ACCCACCTAT
gi|7 : ttagttcaagaGTTTAAAACTTA-CAAACATTAT--CTTACATC-AATTGAGAAACGAGTGCTTACTGTTTA--CAAA-------CT-AGAAAAATTATGTCTTT-TTTGGT----CT-----TAC--------CATGCAGATAAA--GTGCTTTGTT--------------CATGGTCGTGGC-AGGAGAC-TGAA-C-CAA-C--A--ACCCaccactatgtgtctcacatggat
gi|8 : ttttgttttattttagtttaat-CTAGGTAGAACAA-T--TAC--TAAGAAAATGCGG-CAAATGGT-TCTTCCCAA-AGGACACCCCACATAGCGGTTGC-GGAAGAT-CGAA-C-T-G-CA-G--ACTCTCTGATCCTTGGTTCCTTGCTCTGCC-ACTGGATCAGGCACTCCAGCTG
gi|9 : a--TGC--TATGCAAATGTGGTTATA--GTCCCTTGTTCA-AGGGCAGTACACAGTGTCTTGGT-GGGGGTTGTGA----C-A-T--GCAGCCCGCTGATCCTGGGTTATGTGCCTCACA-GCTATACCAAGTGTCCCA-gttttatctgataatggggagtatg
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|12 ): ACCACGATCGCAGTGTTACCGGGTAAAACCATTACTATGCAGATTAAATGTTTTGTTTAACAAAATAACACATTGTCCCCTATTGCAGGGTCAAACTTAGAAACCTT
Unaligned ( gi|18 ): GGATCTAACCCATGACCCTATGACCTTGGGTCCTATGATCTAACACTTGACCACATGCTCCATCTGTAG
Alignments
lowQualScore : 111111 1111111111111111111 11111111 11111 1
lowQualScore : 5 2 55555 33 2 0 222222 77777 3 44 7777777777777777777 4 55 666 888 1 55 0 3 0 0 2 3 3 7 55555555 55 3 0 2 4 1 22222 8 5 7
lowQualScore : . . ..... .. . . ...... ..... . .. ................... . .. ... ... . .. . . . . . . . . ........ .. . . . . . ..... . . .
lowQualScore : 0 4 99999 22 2 2 555555 44444 6 55 8888888888888888888 0 00 333 444 3 55 5 6 5 1 0 6 6 3 44444444 00 3 7 3 0 0 99999 0 0 3
consensus : GTTTAAA-CTTA-T-----TTAT--TTTACATC-GATTGTGAAACAAGTTCTTACAACTTAGGCAAA--TCNCGCT-CGGA-------GTCTTT-CTGGGTAGAACTA-G--TAC--TAAGCGTATGCGGATAAA--GTGTCTTGCTCA-AGGACACCACACATAGCCGTGGC-GGGGGAT-CGAA-C-C-A-C--G--ACCCTCCGATCCTGGGTTCGGTGCTCTACC-ACTGGACCANGCGCTCCA-CTGTAATA-ACTCTATACCGCACT
Reference ( family-2335 ) : GTTTAAA-CTTA-T-----TTAT--TTTACATC-GATTGTGAAACAAGTTCTTACAACTTAGGCAAA--TCNCGCT-CGGA-------GTCTTT-CTGGGTAGAACTA-G--TAC--TAAGCGTATGCGGATAAA--GTGTCTTGCTCA-AGGACACCACACATAGCCGTGGC-GGGGGAT-CGAA-C-C-A-C--G--ACCCTCCGATCCTGGGTTCGGTGCTCTACC-ACTGGACCANGCGCTCCA-CTGTAATA-ACTCTATACCGCACT
gi|1 : GTTTAAA-CTTA-T-----TTAT--TTTACTTC-AGTTGTGAAACAAGTTCTTACAACTTAGGCAAA--TCCCGCT-CGAA-------GTCTTC-CTGGATAGAACCA-G--TAC--TAAGCATATGCGGA-AAA--GTGTCTTGCTCA-AGGACACCACACGTAGCCGTTAC-GGAGGAT-CGAA-C-C-ATT--G--ACCCTCCGATCATGGGTTCAGTGCTCTACC-ACTGAACCATGTGCTCCA-CTGTAATA-A-TCT-TACTGCACT
gi|10 : GTCTTGCCCATAATATTCCACACAGGGTCCTGGCAGGGGGAT-CAAA-CAC-G-C--A--GCCCTCTGATCCCGGGTCCATCGGTCTACCTATTTAACCATGTGCTTCA-C----ATA-ACTCTtccacaaaaataattatttttattgtttgttgttgccaaaatgtcggatatatccgacgtttc
gi|11 : GACATTACTGATTGCCGTGGC-GGATGAT-CGAA-C-A-AGC--G--ACCC-CCGATCTTGGATt
gi|13 : atTTA-T-----TTAT--TTTACATT-GAATGTGAAACAAGAGTTTACAAactacgcaaaacttttgtttcaaatatatgattgagtttaattaatgtgcatg
gi|14 : gtccactattcttTTGTATCTAATTGTGAAACCAATTCTTACAAC-----CAA-----------CAGA-------ACC----------AGTACTA-GCTTAC--CAGACGTACGCAGATAAA--GTATCTTTCTGA-AGGACACatgttgccacatctatccaatgcagatgaagtgttctgctcatgg
gi|15 : TAAG-TTTA-T-----TTAT--TTTACATC-AATTGTGTAAGAAGT-----------------G--TCTCGCT-AAGA-------ATGTTTGCTA---AGAACTG-G--TAC--TAAGC--ATGCACATA
gi|16 : GTTAAAA-CGTA-T-----TTAT--TTTGTATC-AATAG--AAGCACGTTTTTACAACTTGTGCAAA--TTCTG-T-TG-----------CTGT-CTGGATAGtaa
gi|17 : aTTTAAATCTTA-T-----TTAT--TTTACATC-AATTGTG-GACAAGATTATAGAAATCGGGTAAC--TTTTGCT-CAGT-------GTCTTT-CT
gi|19 : GTTTAAA-CTT---------TAT--TTTACATT-TATTGTGAAACAAGTTC
gi|2 : ttcatgttacagtaactgttgttaAA-TTCA-T-----TTAT--TTTACATC-GGTTGTGAAACAAGTTGTCA----TTAGCCAAA--TATCACT-CTAA-------GT
gi|2 : TGGATGGAACTT-G--TAC--TAAGGGTATGTGAATGAA--GTGTCTTGCTCA-AGGACGTCACTTATAGCCGTGGC-GGAGGAT-CGAA-CTC-A-C--G--ACCCTCCGATCCTGGGTTCGAGGTTCTATC-ACATGACATTTCACTCCA-C-ATAATA-actcatgtcgaacaatacggctcaagtacgtttatcgtgatatcagggcctgggtggatggaacttgtactaagggtatgtgaatgaagtgtcttgctcaaggacgtcacttatagccgtggcggaggatcgaactcacgaccctccgatcctgggttcgaggttctatcacatgacatttcactccacataatatatttgaacataagaattaacatt
gi|20 : aattcatttattttacatcggttgtgaaacaagttgtcattagccaaatatcactctaagtactcatgtcgaacaatacggctcaagtacgtttatcgtgatatcagggcctgggAA-TTTA-T-----ATAT--TTTACATC-GATTTTGAAACAAGTTATTACAAtatttgaacataagaattaacatt
gi|21 : atgttaatcgttcattggTTTAAA-ATTA-T-----TTCT--TTAACATC-GATTGCGAAACAAGTTCTa
gi|22 : aagtcagttatgtctatTGGGCGCGGTGCTCTACC-ACTGGACCATACGATCC----GCAATA-A-TCTATACCGTATT
gi|23 : aATCTTGGGTTCGGTGCTCTACC--CTGGATCAAACACTCCA-C
gi|24 : AA-CTTA-T-----TTAT--TTTACATC-GACTATGAAATAAAGTCTTACActgaaaagcccttagt
gi|25 : GTTTAAA-CTTA-T-----TTAT--TTTACTTT-GATTGTGAAACAAG
gi|26 : taTTAAA-CTTA-T-----TCAT--TTTACATT-GATTGTGAAACAATTTCT
gi|3 : GTTTAAA-CTTA-T-----TTAT--TTTACTTT-GATTGTGAAATAAGTTATTACAACTTAGACAAA--TCACACT-C-GA-------GTCTTC-CTGGTTAGAACCA-G--TAC--------TATGCAGA-AAA--ATGTCTTGCTCA-AGGACATCACACATAGCTGTGGT-GGAGGAT-CGAA-C-C---CGAG--ACCCTCTTATCATGGGTTCGGTTCTCTACC-ACTGGACCACAAGCTCCACCTGAAAAATACTTTA
gi|4 : tcacgtattgtgtttattgttctgtGTTTAAA-CTTA-T-----TTAT--TTTACATC-GATTGTGAAACAAGTTCTTACAAATAAGGCAAA--TCACGCT-CGGA----------------------AACTA-G--TAC--TAAGCATATGCGGATAAA--GTGTCGTGCTCA-AGGACACCACCCATAGCCGTGGC-GGAGAAT-CGAC-C-C-A-C--G--ACCCTCCGATCATGGGCTATGTGCTCTACA-ACTGGACCAAGCGATCCA-Catatgggg
gi|5 : gttatgttatgctctatta-CTTG-T-----TT----TATACATT-AATAGTGAATCAAGATCTTACATCTAACACAAA--TTACACT-CAAA-------ATCTTT-CCAAGCAGACCCA-G--TAC--TAAGCATATGTGGATAAA--ATGTCTTACTCA-TGAACACAGCAC-------TGGT-TGGAGAT-TGAATC-C-A-T--A--ACATGTTAGTCCAGATTCCAATGCTCTGCC-ATTTCACAACGCCTTCCA-Cattatttcaatgtatattaatatgg
gi|6 : aattttggAAG-TTTACT-----TTACAATGTACATG-AATTGTGAAATGA--TATTGCAACATA--CAAACATCTTGATACAGA-------ACCT------GGTA----TATG--TACAGTGAGTGGATGTGGATAAA--GTAACTTGTTTA-AGGAC-CTATACTTGGTCCTGGT-GGGGAAT-CTAACC-C-A-G--G--ACCCACCTAT
gi|7 : ttagttcaagaGTTTAAAACTTA-CAAACATTAT--CTTACATC-AATTGAGAAACGAGTGCTTACTGTTTA--CAAA-------CT-AGAAAAATTATGTCTTT-TTTGGT----CT-----TAC--------CATGCAGATAAA--GTGCTTTGTT--------------CATGGTCGTGGC-AGGAGAC-TGAA-C-CAA-C--A--ACCCaccactatgtgtctcacatggat
gi|8 : ttttgttttattttagtttaat-CTAGGTAGAACAA-T--TAC--TAAGAAAATGCGG-CAAATGGT-TCTTCCCAA-AGGACACCCCACATAGCGGTTGC-GGAAGAT-CGAA-C-T-G-CA-G--ACTCTCTGATCCTTGGTTCCTTGCTCTGCC-ACTGGATCAGGCACTCCAGCTG
gi|9 : a--TGC--TATGCAAATGTGGTTATA--GTCCCTTGTTCA-AGGGCAGTACACAGTGTCTTGGT-GGGGGTTGTGA----C-A-T--GCAGCCCGCTGATCCTGGGTTATGTGCCTCACA-GCTATACCAAGTGTCCCA-gttttatctgataatggggagtatg
blockSeqs : T C AAACA AA T CTTGTG CATCT A AG AAATTATGTCTTTTTTGG T CT AGT CGT T TG T G A G T ACGC CA T A T T CCTGA T C A
blockSeqs : A . . . . ATCGGG TCT . AG GTCTTCCTGGT . . C GGT T . . T . . C AAGC . T G . T CAT . C A
blockSeqs : . . . . . CTTAGA TTC . AG ATCTTTCCAAG . . T CAT T . . A . . . TCAC . T G . T GC . .
blockSeqs : . . . . . ATAAGG TTT . TA ATGTTTGCTA . . T CAT T . . A . . . CCGA . T G . A C .
blockSeqs : . . . . . CTAACA TAT . GG CTGTCTGGA . . T TGG T . . A . . . CAAC . G G . C
blockSeqs : . . . . . TTAGC TCA . AA ACCTGG . . T AAA T . . G . . . TGCA . A T . A
blockSeqs : . . . . . CATA TCA . AG ACC . . T CAA T . . G . . . CAC . T A . C
blockSeqs : . . . . . TTTA TTA . GA . . . T C C . . A . . . CAT . G C . G
blockSeqs : . . . . . C . . G . . . T T . . T . . . CAG . . T . A
blockSeqs : . . . . . . . . G . . C . . . . . . CAT .
blockSeqs : . . . . .
blockSeqs : . . . . .
blockSeqs : . . . . .
blockSeqs : . . . . .
blockSeqs : . . . . .
blockSeqs : . . . .
blockSeqs : .
blockSeqCons : CT***
originalCons : GTTTAAA-CTTA-T-----TTAT--TTTACATC-GATTGTGAAACAAGTTCTTACAACTTAGGCAAA--TCNCGCT-CGGA-------GTCTTT-CTGGGTAGAACTA-G--TAC--TAAGCGTATGCGGATAAA--GTGTCTTGCTCA-AGGACACCACACATAGCCGTGGC-GGGGGAT-CGAA-C-C-A-C--G--ACCCTCCGATCCTGGGTTCGGTGCTCTACC-ACTGGACCANGCGCTCCA-CTGTAATA-ACTCTATACCGCACT
finalCons : GTTTAAA-CTTA-T-----TTAT--TTTACATC-GATTGTGAAACAAGTTCTTACAACTTAGGCAAA--TCNCGCT-CGGA-------GTCTTT-CTGGGTAGAACTA-G--TAC--TAAGCGTATGCGGATAAA--GTGTCTTGCTCA-AGGACACCACACATAGCCGTGGC-GGGGGAT-CGAA-C-C-A-C--G--ACCCTCCGATCCTGGGTTCGGTGCTCTACC-ACTGGACCANGCGCTCCACT---AATA-ACTCTATACCGCACT
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|12 ): ACCACGATCGCAGTGTTACCGGGTAAAACCATTACTATGCAGATTAAATGTTTTGTTTAACAAAATAACACATTGTCCCCTATTGCAGGGTCAAACTTAGAAACCTT
Unaligned ( gi|18 ): GGATCTAACCCATGACCCTATGACCTTGGGTCCTATGATCTAACACTTGACCACATGCTCCATCTGTAG
Alignments
lowQualScore : 111111 1111111111111111111 11111111 222 2 1
lowQualScore : 5 2 55555 33 2 0 222222 77777 3 44 7777777777777777777 4 55 666 888 1 55 0 3 0 0 2 3 3 7 55555555 55 3 0 2 4 1 777 3 5
lowQualScore : . . ..... .. . . ...... ..... . .. ................... . .. ... ... . .. . . . . . . . . ........ .. . . . . . ... . .
lowQualScore : 0 4 99999 22 2 2 555555 44444 6 55 8888888888888888888 0 00 333 444 3 55 5 6 5 1 0 6 6 3 44444444 00 3 7 3 0 0 444 3 5
consensus : GTTTAAA-CTTA-T-----TTAT--TTTACATC-GATTGTGAAACAAGTTCTTACAACTTAGGCAAA--TCNCGCT-CGGA-------GTCTTT-CTGGGTAGAACTA-G--TAC--TAAGCGTATGCGGATAAA--GTGTCTTGCTCA-AGGACACCACACATAGCCGTGGC-GGGGGAT-CGAA-C-C-A-C--G--ACCCTCCGATCCTGGGTTCGGTGCTCTACC-ACTGGACCANGCGCTCCAC--TAATAA-TCTATACCGCACT
Reference ( family-2335 ) : GTTTAAA-CTTA-T-----TTAT--TTTACATC-GATTGTGAAACAAGTTCTTACAACTTAGGCAAA--TCNCGCT-CGGA-------GTCTTT-CTGGGTAGAACTA-G--TAC--TAAGCGTATGCGGATAAA--GTGTCTTGCTCA-AGGACACCACACATAGCCGTGGC-GGGGGAT-CGAA-C-C-A-C--G--ACCCTCCGATCCTGGGTTCGGTGCTCTACC-ACTGGACCANGCGCTCCAC--TAATAACTCTATACCGCACT
gi|1 : GTTTAAA-CTTA-T-----TTAT--TTTACTTC-AGTTGTGAAACAAGTTCTTACAACTTAGGCAAA--TCCCGCT-CGAA-------GTCTTC-CTGGATAGAACCA-G--TAC--TAAGCATATGCGGA-AAA--GTGTCTTGCTCA-AGGACACCACACGTAGCCGTTAC-GGAGGAT-CGAA-C-C-ATT--G--ACCCTCCGATCATGGGTTCAGTGCTCTACC-ACTGAACCATGTGCTCCACTGTAATAA-TCT-TACTGCACT
gi|10 : GTCTTGCCCATAATATTCCACACAGGGTCCTGGCAGGGGGAT-CAAA-CAC-G-C--A--GCCCTCTGATCCCGGGTCCATCGGTCTACCTATTTAACCATGTGCTTCAC----ATAACTCTtccacaaaaataattatttttattgtttgttgttgccaaaatgtcggatatatccgacgtttc
gi|11 : GACATTACTGATTGCCGTGGC-GGATGAT-CGAA-C-A-AGC--G--ACCC-CCGATCTTGGATt
gi|13 : atTTA-T-----TTAT--TTTACATT-GAATGTGAAACAAGAGTTTACAAactacgcaaaacttttgtttcaaatatatgattgagtttaattaatgtgcatg
gi|14 : gtccactattcttTTGTATCTAATTGTGAAACCAATTCTTACAAC-----CAA-----------CAGA-------ACC----------AGTACTA-GCTTAC--CAGACGTACGCAGATAAA--GTATCTTTCTGA-AGGACACatgttgccacatctatccaatgcagatgaagtgttctgctcatgg
gi|15 : TAAG-TTTA-T-----TTAT--TTTACATC-AATTGTGTAAGAAGT-----------------G--TCTCGCT-AAGA-------ATGTTTGCTA---AGAACTG-G--TAC--TAAGC--ATGCACATA
gi|16 : GTTAAAA-CGTA-T-----TTAT--TTTGTATC-AATAG--AAGCACGTTTTTACAACTTGTGCAAA--TTCTG-T-TG-----------CTGT-CTGGATAGtaa
gi|17 : aTTTAAATCTTA-T-----TTAT--TTTACATC-AATTGTG-GACAAGATTATAGAAATCGGGTAAC--TTTTGCT-CAGT-------GTCTTT-CT
gi|19 : GTTTAAA-CTT---------TAT--TTTACATT-TATTGTGAAACAAGTTC
gi|2 : ttcatgttacagtaactgttgttaAA-TTCA-T-----TTAT--TTTACATC-GGTTGTGAAACAAGTTGTCA----TTAGCCAAA--TATCACT-CTAA-------GT
gi|2 : TGGATGGAACTT-G--TAC--TAAGGGTATGTGAATGAA--GTGTCTTGCTCA-AGGACGTCACTTATAGCCGTGGC-GGAGGAT-CGAA-CTC-A-C--G--ACCCTCCGATCCTGGGTTCGAGGTTCTATC-ACATGACATTTCACTCCACA-TAATAactcatgtcgaacaatacggctcaagtacgtttatcgtgatatcagggcctgggtggatggaacttgtactaagggtatgtgaatgaagtgtcttgctcaaggacgtcacttatagccgtggcggaggatcgaactcacgaccctccgatcctgggttcgaggttctatcacatgacatttcactccacataatatatttgaacataagaattaacatt
gi|20 : aattcatttattttacatcggttgtgaaacaagttgtcattagccaaatatcactctaagtactcatgtcgaacaatacggctcaagtacgtttatcgtgatatcagggcctgggAA-TTTA-T-----ATAT--TTTACATC-GATTTTGAAACAAGTTATTACAAtatttgaacataagaattaacatt
gi|21 : atgttaatcgttcattggTTTAAA-ATTA-T-----TTCT--TTAACATC-GATTGCGAAACAAGTTCTa
gi|22 : aagtcagttatgtctatTGGGCGCGGTGCTCTACC-ACTGGACCATACGATCCGC---AATAA-TCTATACCGTATT
gi|23 : aATCTTGGGTTCGGTGCTCTACC--CTGGATCAAACACTCCAC--
gi|24 : AA-CTTA-T-----TTAT--TTTACATC-GACTATGAAATAAAGTCTTACActgaaaagcccttagt
gi|25 : GTTTAAA-CTTA-T-----TTAT--TTTACTTT-GATTGTGAAACAAG
gi|26 : taTTAAA-CTTA-T-----TCAT--TTTACATT-GATTGTGAAACAATTTCT
gi|3 : GTTTAAA-CTTA-T-----TTAT--TTTACTTT-GATTGTGAAATAAGTTATTACAACTTAGACAAA--TCACACT-C-GA-------GTCTTC-CTGGTTAGAACCA-G--TAC--------TATGCAGA-AAA--ATGTCTTGCTCA-AGGACATCACACATAGCTGTGGT-GGAGGAT-CGAA-C-C---CGAG--ACCCTCTTATCATGGGTTCGGTTCTCTACC-ACTGGACCACAAGCTCCAC--
gi|4 : tcacgtattgtgtttattgttctgtGTTTAAA-CTTA-T-----TTAT--TTTACATC-GATTGTGAAACAAGTTCTTACAAATAAGGCAAA--TCACGCT-CGGA----------------------AACTA-G--TAC--TAAGCATATGCGGATAAA--GTGTCGTGCTCA-AGGACACCACCCATAGCCGTGGC-GGAGAAT-CGAC-C-C-A-C--G--ACCCTCCGATCATGGGCTATGTGCTCTACA-ACTGGACCAAGCGATCCAC--ctgaaaaatactttaatatgggg
gi|5 : gttatgttatgctctatta-CTTG-T-----TT----TATACATT-AATAGTGAATCAAGATCTTACATCTAACACAAA--TTACACT-CAAA-------ATCTTT-CCAAGCAGACCCA-G--TAC--TAAGCATATGTGGATAAA--ATGTCTTACTCA-TGAACACAGCAC-------TGGT-TGGAGAT-TGAATC-C-A-T--A--ACATGTTAGTCCAGATTCCAATGCTCTGCC-ATTTCACAACGCCTTCCAC--attatttcaatgtatattaatatgg
gi|6 : aattttggAAG-TTTACT-----TTACAATGTACATG-AATTGTGAAATGA--TATTGCAACATA--CAAACATCTTGATACAGA-------ACCT------GGTA----TATG--TACAGTGAGTGGATGTGGATAAA--GTAACTTGTTTA-AGGAC-CTATACTTGGTCCTGGT-GGGGAAT-CTAACC-C-A-G--G--ACCCACCTAT
gi|7 : ttagttcaagaGTTTAAAACTTA-CAAACATTAT--CTTACATC-AATTGAGAAACGAGTGCTTACTGTTTA--CAAA-------CT-AGAAAAATTATGTCTTT-TTTGGT----CT-----TAC--------CATGCAGATAAA--GTGCTTTGTT--------------CATGGTCGTGGC-AGGAGAC-TGAA-C-CAA-C--A--ACCCaccactatgtgtctcacatggat
gi|8 : ttttgttttattttagtttaat-CTAGGTAGAACAA-T--TAC--TAAGAAAATGCGG-CAAATGGT-TCTTCCCAA-AGGACACCCCACATAGCGGTTGC-GGAAGAT-CGAA-C-T-G-CA-G--ACTCTCTGATCCTTGGTTCCTTGCTCTGCC-ACTGGATCAGGCACTCCA
gi|9 : a--TGC--TATGCAAATGTGGTTATA--GTCCCTTGTTCA-AGGGCAGTACACAGTGTCTTGGT-GGGGGTTGTGA----C-A-T--GCAGCCCGCTGATCCTGGGTTATGTGCCTCACA-GCTATACCAAGTGTCCCAgctggttttatctgataatggggagtatg
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|12 ): ACCACGATCGCAGTGTTACCGGGTAAAACCATTACTATGCAGATTAAATGTTTTGTTTAACAAAATAACACATTGTCCCCTATTGCAGGGTCAAACTTAGAAACCTT
Unaligned ( gi|18 ): GGATCTAACCCATGACCCTATGACCTTGGGTCCTATGATCTAACACTTGACCACATGCTCCATCTGTAG