lowQualScore : 1111 1111111 11111 22 33333333333333 111 1 2222222222 1111 111 11111111 11 111111111 22 11 2222222222 1 3 222 1111111 22222222
lowQualScore : 2 1 444 44 555 6666 3 555 8888 2 3 999999 3 4444444 1 44 3 44 3 0 3 3 555 3 5 11111 6 1 7 5 3 77 6 44 00000000000000 111 8 5 2 6 0 5555555555 3333 0 8 0 3 5 1 1 000 6 99999999 111 3 00 5 66 5 1 777 5 555555555 66 1 1 66 1 2 88 5 8 5 5 5 9 22 222 66 1111111111 5 777 55 55 6 0 44444 4 2 3 555 3 7 5 3 3 111 6 4444444 3 999999 3 0 555 555 44 99999999 44 6 2
lowQualScore : . . ... .. ... .... . ... .... . . ...... . ....... . .. . .. . . . . ... . . ..... . . . . . .. . .. .............. ... . . . . . .......... .... . . . . . . . ... . ........ ... . .. . .. . . ... . ......... .. . . .. . . .. . . . . . . .. ... .. .......... . ... .. .. . . ..... . . . ... . . . . . ... . ....... . ...... . . ... ... .. ........ .. . .
lowQualScore : 7 8 666 22 444 5555 1 222 5555 2 3 666666 3 2222222 8 66 3 66 3 1 1 1 444 1 4 33333 4 8 0 6 3 33 7 55 33333333333333 333 0 0 2 0 1 0000000000 3333 7 0 1 9 7 7 7 000 7 33333333 666 5 00 6 99 0 4 888 0 555555555 99 0 0 99 4 2 99 0 4 0 0 0 6 00 666 11 3333333333 0 000 00 00 4 4 00000 8 6 1 444 1 9 2 3 3 111 4 2222222 3 666666 3 2 444 444 22 33333333 22 9 9
consensus : TACAGGGTGTTT-CAAAATATATGTTACAGTTTCGTGGGTTTATAATTTGC--ATTTT--TTT---A----T-AC--AATATGTAAAAA---CAGAAAACACAATTTTAAAGAGGACA-TTTCAAA------ATTTTA-TTACA-------TATGCAATATGTCA--ATTTTGCT-TGA--AAAA-TGAGATGTTGGTCAGAAATTTCATAAAATTTAATTTTC-AGATGA---TG-TGTTCCAAGTGACGTCCGTTTTGACGAATAACGACGTCA-ATTCGTTTTCCAGAGTTCTCTATTACTGCTGCACAAGTTTCAGCTGATACTGTTTGGA-A--CT-C-CTCTTGAT--G-ATGA-T----GTTTN--CAAACAGAACTTCCGC-TTTTGGGGAAGTGAAAAACCAAACGTTTACGCTGAAAAGTCGTTGCATGCTGAAAAAGTAAC----------CGTGNGGGCCGCACTCAGTTCAACTGGACTAATTGGGCCGTTTTTCTTTGAAAACAGTGATGGTGAAACAGAAAC-GATAAACAGCTGTCGATATTTGGAT---GTCACGCAGAAGAAATTCATTCCGGCATTAAAGAGGAGGAAA-GTGGATATGCACAGGATGTGGTTTCAGCAAGATGGAGCAACACCACACACA--T-----CTACAGAAGTTCTAGCATGGCTAAAGAAGACATTTGGCAN-CAGATTT--C-TGTCTTTCAGAAC--GGATCAAT-TT------TGGCC--ACCCCATTCCCCCGACCTCAACC--CGTTGGACTTCTTTCTGTGGG-GTTA-TCT-T-AAAGACAGGGTNTATCAATGCAAAC--CAACATGTGTT---------GAA-GAGTTGAAAGCATCA---ATCAAGAGAGAGT--TCCAAACAGTATCAGCTGAAACTTGTGCAG--CAGTAATAGAGAACTTTGGAAAACGAAT-TGACGTCGTTATTCGTCAAAACGGACGTCACTTGGAACA-CA---TCA-TCTGAAAATTAAATT-TTATGAAATTTCT-GACTAACATCTCA-TTTTTCAAGCAAAATT--GACATATTGCATA-------TGTAA-TAAAAT------TTTGAAA-TGTCCTCTTTAAAATTGTG---TTTTCTGTTTTTACATATT---GTA--T--A-----AAAAAAAT--GCAAATTATAAACCCACGAAACTGTAACATATATTTTG-AAACACCCTGTA
Reference ( gi|2 ) : TACAGGGTGTTT-CAAAATATATGTTACAGTTTCATGGGTTTATAATTTGC--ATTTT--TTT---A----T-AT--AATATGTAAAAA---AAGAAAACACAATTTTAAAGAGGACA-TTTCAAA------ATTTTA-TTACA-------TATGCAATATGTCA--ATTTTGCT-TGA--AAAA-TGAGATGTTGGTCAGAAATTTCATAAAATTTAATTTTC-AGATGA---TG-TGTTCCAAGTGACGTCCGTTTTGACGAATAACAACGTCA-ATTAGTTTCCCAGAGTTCTCTATTACTGTTGCACAAGTTTCAGTTGATACTGTTTGGA-A--CT-C-ATCTTGAT--GCATG--T----GTTTA--CAAACAGAACTTCCGC-TTTTGGGGAATTGAAAAACCAAACATTTACGCTGAAAAGTCGTTGCGTGCTGAAAAAGTAAC----------CGCAAGGGCCACACTCAGTTCAACTGGACTAATTAGGCCGTTTTTCTTTGAAAACAGTGATGATGAAACAGAAAC-GATAAACAGCTGTCGATATTTGGAT---GTCATGCAGAAGAAATTCATTCCGGCATTAAAGAGGAGGAAA-GTGAATATGCACAGGATGTGGTTTCAGCAAGATGGAGCAACACCACACACA--T-----CTACAGAAGTTCTAGCATGGCTAAAGAAGACATTTGGCAT-CAGATTT--C-TGTCTTTCAGAAC--AGATCAAT-TT------TGGCC--ACCCCATTCCCCTGACCTCAACC--CGTTGGACTTCTTAATGTGAG-GTTA-TCT-T-AAAGACAGGGTGTATCAATGCAAAC--CAACATGTGTT---------GAA-GAGTTGAAAGCATCA---ATCAAGAGAGAGT--TCCAAACAGTATCAGCTGAAACTTGTGCAG--CAGTAATAAAGAACTTTGGAAAACGAAT-TGACGTAGTTATTCGTCAAAACGGACGTCACTTGGAACA-CA---TCA-TCTGAAAATTAAATTGTTATGAAATTTCT-GACTAACATCTCA-TTTTTCAAGCAAAATA--GACATATTTCATA-------TGTAA-TAAAAT------TTTGAAA-TGTCCTCTTTAAAATTGTG---TTTTCTGTTTTTACATATT---GTA--T--A-----AAAAAAAT--GCAAATTATAAACCTACGAAACTGTAACATATATTTTG-AAACACCCTGTA
gi|3 : TACAGGGTGTTT-CAAAATATATGTTACAGTTTTGTTGGTTTATAATTTGC--ATTTT--TTT---A----T-AC--AATATGTTAAAA---CAGAAAACAC---TTTAAAGAGGACA-TTTCAAA------ATTTTA-TTACA-------TATGAAATATGTCA--ATTTTGCT-TGA--AAAAATGAGATGTTAGTTAGAAATTTCATAAAATTTAATTTTC-AGATGA---TG-TGTTCCAAGTGACGTCCGTTTTGACGAATAACGACGTCA-ATTCGTTTTCCAAAGTTCTCTATTACTGCTGCACAAGTTTCAGCTGATACTGTTTGGA-A--CT-CTCTCTTGAT-----TGA-T----GCTTT--CAA
gi|3 : gtataggttgtttcaaaatatatgttacagtttcgtgggtttataattagcatttttttatataatacgtaaaaacagaaaacacaattttaaagaggacatttaaaaaatttattacaaatgcaatatgtcaattttacttgaaaaatgagatattggtcagaaatttcataaaatttgatttcagctgatactgtttggaactctctcttgatgcatgtgtttacaaacagaacttccgcttttggggaagtgaaaaccaaaacatttacgctgaaaagtcgttgcatgctgaaaaagtaaccgtgtgggccgcactcagttcaactggactaattaggccgtttttctttgaaaacagtgatggtgaaaccgaaacgataaacagctgtcgatattttgatgtgacgcagaagaaattcattccggcattaaagaagaggaaagtgaatatgcacaggatgtggtttcagcaagacatagcaacaccacacacatctacagaagttctggcatggctaaagaatacatatggcaccagatttctgtctttcagaacagatcaaatttggccaccccattcatctgacctcaacccgttagacttctttatgtgaggttatcttaaagacagggtgtatcaatgcacaccaacatgtgttgaagggTATAGGTTGTTT-CAAAATATATGTTACAGTTTCGTGGGTTTATAATTAGC--ATTTT--TTT---A----T-AT--AATACGTAAAAA---CAGAAAACACAATTTTAAAGAGGACA-TTTAAAA------AATTTA-TTACA-------AATGCAATATGTCA--ATTTTACT-TGA--AAAA-TGAGATATTGGTCAGAAATTTCATAAAATTTGA-TTTC-AGCTGA---TACTGTT
gi|5 : gTATAGGGTGTTT-CA---TATATGTTACAGTTTCGTGGGTTTATAATTTGC--ATTAT--TTT---A----T-AC--AATATGTAAAAA---CAGAAAA-ACAATTTTAAAGAGGACA-TTTCAAA------ATTTTA-TTACA-------TATGAAATAGGTCA--ATTTTGCT-TGA--AAAA-TGAGGTGTTAGTCAGAAATATTATAAAATTTAATTTTC-AGATGA---TG-TGTTCCATGTGACGTCCGCTTTGACGAATAACGACATCA-ATTCGTTTTCCAAAGTTCTCTATTACTGCTGCACAAGTTTCAGCTGATACTGTTTGGA-A--CTCC-CTCTTGAT-----TGA-T----GCTTT--CAAtggaactctctcttgatgcatgtgtttacaaacagaacttccgcttttggggaagtgaaaaccaaaacatttacgctgaaaagtcgttgcatgctgaaaaagtaaccgtgtgggccgcactcagttcaactggactaattaggccgtttttctttgaaaacagtgatggtgaaaccgaaacgataaacagctgtcgatattttgatgtgacgcagaagaaattcattccggcattaaagaagaggaaagtgaatatgcacaggatgtggtttcagcaagacatagcaacaccacacacatctacagaagttctggcatggctaaagaatacatatggcaccagatttctgtctttcagaacagatcaaatttggccaccccattcatctgacctcaacccgttagacttctttatgtgaggttatcttaaagacagggtgtatcaatgcacaccaacatgtgttgaagggttgaaagcatcaatcaagagagagttccaaacagtatcagctgaaacttgtgcagcagtaatagagaactttggaaaacgaattgacgtcgttattcgtcaaaacggacgtcacttggaacacatcatctgaaaattaaattttatgaaatttctaactaacatctcattttttcaagcaaaattgacatatttcatatgtaataaaattttgaaatgtcctctttaaagtgttttctgttttaacatattgtataaaaaaatgcaaattataaaccaacaaaactgtaacatatattttgaaacaccctgta
gi|6 : ctctctcttgatgcatgattgtgtaaacaaacagaacttccgcttttggggaagtgaaaaaccaaactattaagctgaaaagttgttgcatgctgaaaagtaaccgtgtgggccgcactcagttcaactggactaattaggtggtttttctttgaaaacagtgattgtgaaacagaaacgataaacagctgtcaatattgggatgtcatgcagaagaaattcattccggcattaaaaaggaggaaagtgaatatgcacaggatgtggtttcagcaagatggagcaacaccacacacatctacagaagttctagcattgtaaaagaagacatttggcatcagatgtctgtctttcagaacagatcaattttggccaccctattcccctgacctcaacccgttggacttctttctgtgaggctatcttaaagacagggtttatcaatgcaaaccaacatgtgttgaagaaTACAGGGTGTTT-CAAAATATATGTTACAGTTTCGTGGGTTTATAATTTGC--ATTGT--TTT---A----T-AC--AATATGTAAAAA---CAGAAAATACAATTTTAAAGAGGACA-TTTCAAA------ATTTTA-TTACA-------TTTGAAATATGTCA--ATTTTGCT-TGA--AAAA-TGAGGTGTTAGTCAGAAATTTCATAAAATTTAATTTTC-AGATGA---TG-TGTTCCAAGTGACGTCCGTTTTGACGAATAACGACGTCA-ATTAGTTT----------TCTATTACTGCTGGACAAGTTTCAGCTGATACAGTTTGGA-A--CT-CTCTCTTGAT-----TGA-T----GCTTT--CAA
gi|15 : gctgaaaagtcgttgcatgctgaaaaagtaaccgtaatggccgcactgagttcaactggactaattaggccatttttctttgaaaacactgatggtgaaacagaatcgataaacaactgtcgatatttagatgtcgtacagaagaaattcattccggcattaaagaggaggaaagtgaatatgcacaggatgtggtttcagcaagatggagcaacaccacacacatctacagaagttctagcttggctaaagaagacatttggcaccagatttctgtctttcagaacagatcaatgttggccactccattcccctgacctcaacccgttggacttctttctgtgaggttaacttaaagacagggtgtatcaatgcaaaccaacatgtgttgaaaagTACAGGGTGTTT-CAAAATATATGTAACAGTTTCGTGGGTTTATAATTTGC--ATTTT--TT----A----T-AC--AATATGTAACAA---CAGAAAACACAATTTTAAAGAGGACA-TTTCAAA------ATTTTA-TTACA-------TATGAAATATGTCA--ATTTTGCT-TGG--AAAA-TGAGATGTTAGTCAGAAATTTCATAAAAATTAATTTTC-AGATGA---TG-TGTTCCAAGTGACGTCCGTTTTGACGAATAACGACGTCA-ATTCGTTTTCCAAAGTTCTCTATTACTGCTGCACAAGTTTC
gi|14 : TACAGGGTGTTT-CAAAATATATGTTACAGTTTCATGGCTTTATAATTTGC--ATTTT--TTTTTAA----T-AT--AATATGTAAAAA---CAGAAAACACAATTTTAAAGAGGACA-TTTCAAA------ATTGTA-TTACATAATAATTATGGTATATGTCA--ATTTTGCT-TGA--AAAA-TGAGATGTTGGTCAGAAATT--ATAAAATTTAATTTTC-AGATGA---TG-TGTTCCAAGTGACGTCCGTTTT---------------------------CCAGAGTTCTCTATTACTGCTGCACAAGTTTCAGCTGATACTGTTTGGA-A--C
gi|20 : TACAGGGTCTCT-CAAAGTATATGTTACAGTTTCGTGGGTTTATAATTTGC--ACTTT--TT----A----T-AC--AATATGTAAAAA---CAGAAAACACAATTTTAAAATGGACA-TTTCCAA------TTTTTT-TTACA-------TATGCAAT-----------TTGCT-TGA--AAAA-TGAGATGTTGGTCAAAAATTTCATAAAATTTAATTTCC-AGATAA---TG-TGTTCCAAGTGA
gi|1 : ACAGGGTGCTT--GTAATATATGTTACAGTac
gi|11 : ACAGGGTGTCT-CAAAATATATGTTACAGTTTCCGGGGGTTATAATTTGC---TTAA--TTT---A----T-AC--ACTATATA----------TAAACACCATTTAAAAGAGGACA-TTCCAAAAAGGTTATTCCAGTTATAG------TATACAACATGTCA--AGATTGTT-TGA--AAAA-CATGATATCAGTCTGTACCTT-ACAAAATATCATTTTC-ATATGA---TA-TGTTCAAATTGATGCCCATTCTGATGAATTTTAACG---------------ACAGTTCTTTGCCGCTGCAGCACAAATTTCAGCTGATACTGTTAGGA-ATTCT-C--TCTTGAT--aacgactgtgtattacagataagtaggaaagtaatttgctttgtataatgctttgtataaaacatcaaattaacaaacaattaaccaaattttatatggcactgaaagttcggggaaaattacgacgtcaagatgttatcaaatcaggtgtttgattacaaatggcactgtccacagaaatgcacagcgacatttttaagctcttttatgaaagtacatctgttgttaacgttgtaagaagaatgcagaaaatgtacccagaggaagaaagacgcaacagaattcaagttcatcgaaaagaacgacattctgaacaaacgggatcggttttaaaccagcgccacagtaatgccgggagaccaaggagcgcttggtctgatgagaacatggctagtgtgagagcttctgttgtagaaacacctcagcagtctgtaagacagatactttacgatgtttctaacgcaagtgcatcaacagtatacaggattctacgaattgacctgaaatcagacattgactaaaggttatcgtttgcaaacttggttaaggaccattacatgtttcgatgtattatggtttagcgacgaagcctatcttgatgaatgtgttaaacagaacttacgccttttggagaagtgaaaaaccaaacatttacgctgaaaagtcattgcatgctgaaacagtaaccgcactcagttcttctttattaattgggtcgtttttctttgaaaacagtgatggtgatacagaaacgataaacagctgtcgacatttggatcacatcacgaagaagaaatgcattccggaattaaacagtaggaaagttgatatgaacaggatgtgggttcatgaagatggagcaataccacaaatatatagactacagaagttctagcttcggtaaagaagacatttggcatcatatttctgtgtttcagaacggatcaattgcggccaccacaatcccctgacctcaacccgttgtacttctttctgtggggttaaagacagggtatataactgcaaaccaacatgtgtggaagagttaaaagcataaaaaaggagaattctccaaa
gi|21 : gaggagttgaaagtatcaACAGGGTGTTT-CATAGTATATGTTACAGT
gi|13 : CAGGATTTTTTCAAAATATATGTTACAGTTTTGTGGGTTTATAATTTGC--ATTTT--TTT---A----T-AT--AATATGTAAATA---CAGAAAACACAATTTTAGAGAAGAAAATTTTTAA------ATTTTA-TTACA-------TATGCAATATGTCA--ATTTTGCT-TGA--AAAA-TGAGATGTTGGCCAGAAATTTCATAAAATTTAATTTTC-AGATGA---TT-TGTTCCAAGTGACGTCCGTTTTGACGAATAACGAGTTCA-GTTAGTTTTTCAGAGTTCTCTATTACTGCTGCACAAGTTTCAGCTGATACTGTTaacaactgcgtattacagataaatggacagtattttgctgcgtattttacctcaaataaacaagcaattaaccaaattgtatatggcactgaaaggtttttgaaaatatttctttgagtgtcctgtgtcctgactgagtgttatcacgtattttc
gi|19 : CAGGGCGTTT-CAAAATATATGTTGGAGTTTCATGGGTTTATAATTTGC----TTA--ATT---A----CGGG--AAAATGTAAAAA---CAGAAATCACCATTTGAAATAGTACA-TTTCTAA------ACGTTA-TTCCA-------TATACAATATATCAAGATTGTTTT-TAA--AAAA-GCTGATCTTAGTCCATGCCTTTATAAAATGTCATTTC---GATGAAATTG-TATT
gi|7 : AGGGTGTTT-CAAAATATATGTTACAGTTTCATGGGTTTATTATTTGC--ATATT--TTT---A----T-AT--AATATGTAAAAACAGAAAAAAACACAATTTTAAAAAAGACA-TTTTAAA------ATTTTA-TTACA-------TATGCAATATGTCA--ATTTTGCT-TGA--AAAA-TGAGATGTTGGTCAGAACTTTCATAAAATTTAATTTTC-AGATGA---TG-TGTTCCAAGTGACGTCCGTTTTGACGAATAACGACATCA-ATTAGTTTTCCAGAGTTCTCTATTACTGCTGCACAAGTTTCAGCTGATACTGTTTGGA-A--CT-CTCTCTTAAT--GCATG--T----GTTTA--TAAACAGAACTTCCGC-TTTTGGGGAAGTGAAAATCCAAACTTTTACGCTGAAAAGTCGTTGCATGCTGAAAAAGTAGC----------CGTAATGGCCACATTGAGTTCAACTGGACTAATTAGGCCATTTTTCTTTGAAAACACTGATGGTGAAACAGAAAC-GATAAACAGTTGTCGATATTTAGAT---GTCATGCAGAAGAAATTCATTCTGGCATTA
gi|24 : AGGGTGTTT-CAAAATGTATGTTACAGTTTCATGGGTGAATAATTTG-----TTTAATTT---A----T-GC--AATATAGAAAAG---CAGAAAACACCATTTGAA
gi|4 : aGGTGTTT-CATAATATATGTTACAG
gi|9 : TTGTAATTTGCTTATTTA--TTT---AGATCT-ATGCAATATGTAAAAA---CTGAAAACACCATTTGAAAGAAAACA-GTTCAAA------GTTTCA-TTCCA-------TATGTAACATGTCA--A----GCTGTGATCACAA-T----------CTATATATTT-ATCAAATGTCATTTTCAAAATAA---TA-TGTTCTAAGTGACGTCCTTTCTGACGAATAACGGCGTCACAGT-GTTTCACAAAGGTCTCTACCATTTCTACACAGGTTTCAGAGGATACTGTTTGGATT--TT-T-AT-TTGAT-----TGA-T----GTTTT--CAAaaacgacagtgtattacagatgatgggaatgtattttgttgtgtataatacatcaaattaacaagcaattaaacaaattttatatggcactgaaagttcgagaaaaataacgacgtcatgacgtcatgaatgacatttctgacgacatcaattcaggtgtttgtttacaaatggcgctgtccacagaaatgcacagagacattattaagtacttttatgaatgttaatatgttgctaaagttctcagaagaatgcaaaaaaatgtacccagaggaaaaaagtctaaacagaatgcaagttcatcgaatagtacggaaatctgagcaaacggggtcggttttagaccagcgtcacagtaatgccaggagaccaaggagcgctcgatctgatgagaacatcggtagtgtgagagcttctgttgcagaaacacctcacctctgcaagaaagatagtttacgatgtttctaaagcttgtgcttcaactgtatacaggattctacgatttgaactgaaacttattccatataaaatatcttttatgaaatatttgaagaaatcagacattgactattgtttgcaaactggataaaggaccaacagcatgttccggaagtactgtggtttagcccatttttaccttgatgccaaaccaaacatttactctgaaaagtcgttgcatgctgaaaaagtaaccgtgtgggcctaactcagttcaacaggactaattgggccgttttcctttgaaaacagtgatggtgaaacagaaacgataaacagttgttgatatttggatgttatgcagtagaaattcattccggcattaaagagggagaaagtggttatgcacagggtgtggtttcagcaagatggagcaacaccacgcacatctacagaagttcac
gi|22 : ggtttctgtctttcaaggcggaccaattttggcgaccccactccccaaatctcaacccgctggacttcttcctgtggggttatcttaaggcagtgtcatagtgtaaaccaacatgtgttgatcacccggaatagTAAACTTTAATTTTC-AGATGA----G-TGTTCAAAATGACGTCCGTTTTGATGAATAACGACATCACATCTTTTTCCAAGA--TCTCTAGCATTGCTGCAAAAATTTCAGCTGATACTGTTGGGA-A--TTCC-CTCTTGAT--G
gi|16 : GTTTCTTAAAGTTTTTTATTACTGATCTGCATGTTTCAGTTGATACT------A-AT-CT-C-ATTTTattttaactcttccatacatgttcgtttgtat
gi|3 : tagcttgagaaggcatttggtgacaatgtcatttctttcaagacagagaaagagtggtttctccattcacacgatattaaccatcttggttattatttgagagatacttataaaggcagaatatataaacaaacaccaactcccggaatgaattgaaagtggctattggaagaTTTCAGCTGATACTGTTTGGA-A--CT-CTCTCTTGAT--GCATG--T----GTTTA--CAAACAGAACTTCCGC-TTTTGGGGAAGTGAAAACCAAAACATTTACGCTGAAAAGTCGTTGCATGCTGAAAAAGTAAC----------CGTGTGGGCCGCACTCAGTTCAACTGGACTAATTAGGCCGTTTTTCTTTGAAAACAGTGATGGTGAAACCGAAAC-GATAAACAGCTGTCGATATTTTGAT---GTGACGCAGAAGAAATTCATTCCGGCATTAAAGAAGAGGAAA-GTGAATATGCACAGGATGTGGTTTCAGCAAGACATAGCAACACCACACACA--T-----CTACAGAAGTTCTGGCATGGCTAAAGAATACATATGGCAC-CAGATTT--C-TGTCTTTCAGAAC--AGATCAAA-TT------TGGCC--ACCCCATTCATCTGACCTCAACC--CGTTAGACTTCTTTATGTGAG-GTTA-TCT-T-AAAGACAGGGTGTATCAATGCACAC--CAACATGTGTT---------GAA-GGGTTGAAAGCATCA---ATCAAGAGAGAGT--TCCAAACAGTATCAGCTGAAACTTGTGCAG--CAGTAATAGAGAACTTTGGAAAACGAAT-TGACGTCGTTATTCGTCAAAACGGACGTCACTTGGAACA-CA---TCA-TCTGAAAATTAAATT-TTATGAAATTTCT-AACTAACATCTCATTTTTTCAAGCAAAATT--GACATATTTCATA-------TGTAA-TAAAAT------TTTGAAA-TGTCCTCTTTAAA---GTG---TTTTCTGTTTTAACATATT---GTA--T--------AAAAAAAT--GCAAATTATAAACCAACAAAACTGTAACATATATTTTG-AAACACCCTGTAgtttagagtggctatcacacagaagggac
gi|8 : gtataggttgtttcaaaatatatgttacagtttcgtgggtttataattagcatttttttatataatacgtaaaaacagaaaacacaattttaaagaggacatttaaaaaatttattacaaatgcaatatgtcaattttacttgaaaaatgagatattggtcagaaatttcataaaatttgaTGAA-G--CC-C-ATTTTTATTTGAATG--CAACGGTTAA--CAAGCAAAACTGTAGA-TACCGGAGAAGGGGAGAACCAAATGTGTTTGTCGAGACGCCATTGCACGGCGAAAAGGTGACGGTTTGGCCGCGTAAAG----CTCTCAG-------GGAATTATTGGAACAATTT-CTATGAAGATAAAAACGAAGAAACTGCAACTGA--AACAG-------TA-------------------AAAATATTTTTACCAGCATAAAAAAAGACGAGACATTGATATTAATAT-ATATGGTATCAGCAAGGTGGCGCTGTTCC-CACACAGCC-----CTGCA-AATTCCCGACA-GGCTGGAGGAGAAAT---GCAGACA-ATTTGAC-T-TCGCTCAAAAC--------GT-TTACAGAATGGCC--GCCGAACTCGCCGGATCTAAGCC--CACCCGGCTTTTTCTTGTGGG-A--ACTCT-TGAAGGGCATGATTTA------CAAAC--CAATA
gi|1 : cattacagatgtgatttgattccaagaGAA-G--CC-T-ATCTTGAT--GAATG--T----GTT-----AAACAGAACTTACGCCTTTTGGAGAAGTGAAAAACCAAACATTTACGCTGAAAAGTCATTGCATGCTGAAACAGTAAC----------CGCA---------CTCAGTTCTTCTTTATTAATTGGGTCGTTTTTCTTTGAAAACAGTGATGGTGATACAGAAAC-GATAAACAGCTGTCGACATTTGGATCACATCACGAAGAAGAAATGCATTCCGGAATTAAACAGTAGGAAA-GTTGATATGAACAGGATGTGGGTTCATGAAGATGGAGCAATACCACAAATA--TATAGACTACAGAAGTTCTAGCTTCGGTAAAGAAGACATTTGGCAT-CATATTT--C-TGTGTTTCAGAAC--GGATCAAT-TG------CGGCC--ACCACAATCCCCTGACCTCAACC--CGTTGTACTTCTTTCTGTGGG-G------T-T-AAAGACAGGGTATATAACTGCAAAC--CAACATGTGTG---------GAA-GAGTTAAAAGCATAA---A--AAAGGAGAATTCTCCAAAccaaaggtaacggaagaactcaagaaagc
gi|5 : acagggtgcttgtaatatatgttacagtaacgactgtgtattacagataagtaggaaagtaatttgctttgtataatgctttgtataaaacatcaaattaacaaacaattaaccaaattttatatggcactgaaagttcggggaaaattacgacgtcaagatgttatcaaatcaggtgtttgattacaaatggcactgtccacagaaatgcacagcgacatttttaagctcttttatgaaagtacatctgttgttaacgttgtaagaagaatgcagaaaatgtacccagaggaagaaagacgcaacagaattcaagttcatcgaaaagaacgacattctgaacaaacgggatcggttttaaaccagcgccacagtaatgccgggagaccaaggagcgcttggtctgatgagaacatggctagtgtgagagcttctgttgtagaaacacctcagcagtctgtaagacagatactttacgatgtttctaacgcaagtgcatcaacagtatacaggattctacgaattgacctgaaatcagacattgactaaaggttatcgtttgcaaacttggttaaggaccattacatgtttcgatgtattatggtttagcgac--CT-C--TCTTGAT--GCATGATT----GTGTAAACAAACAGAACTTCCGC-TTTTGGGGAAGTGAAAAACCAAACTATTAAGCTGAAAAGTTGTTGCATGCTGAAAA-GTAAC----------CGTGTGGGCCGCACTCAGTTCAACTGGACTAATTAGGTGGTTTTTCTTTGAAAACAGTGATTGTGAAACAGAAAC-GATAAACAGCTGTCAATATTGGGAT---GTCATGCAGAAGAAATTCATTCCGGCATTAAAAAGGAGGAAA-GTGAATATGCACAGGATGTGGTTTCAGCAAGATGGAGCAACACCACACACA--T-----CTACAGAAGTTCTAGCATTGTAAAAGAAGACATTTGGCAT-CAGATGT--C-TGTCTTTCAGAAC--AGATCAAT-TT------TGGCC--ACCCTATTCCCCTGACCTCAACC--CGTTGGACTTCTTTCTGTGAG-GCTA-TCT-T-AAAGACAGGGTTTATCAATGCAAAC--CAACATGTGTT---------GAA-GAATTGAAAGCATCA---ATCAAGAGGGAGT--TCCAAACAGTATCAGCTGAAACTTGTGCAG--CAGTAATAGAGAACTTTGGAAAACGAAT-TGATGTCGTTATTCGTCAAAGCGGACGTCACATGGAACA-CA---TCA-TCTGAAAATTAAATT-TTATAATATTTCT-GACTAACACCTCA-TTTTTCAAGCAAAATT--GACCTATTTCATA-------TGTAA-TAAAAT------TTTGAAA-TGTCCTCTTTAAAATTGT----TTTTCTGTTTTTACATATT---GTA--T--------AAAATAAT--GCAAATTATAAACCCACGAAACTGTAACATATA---TG-AAACACCCTATA
gi|4 : ctAAACCAAACATTTACTCTGAAAAGTCGTTGCATGCTGAAAAAGTAAC----------CGTGTGGGCCTAACTCAGTTCAACAGGACTAATTGGGCCGTTTTCCTTTGAAAACAGTGATGGTGAAACAGAAAC-GATAAACAGTTGTTGATATTTGGAT---GTTATGCAGTAGAAATTCATTCCGGCATTAAAGAGGGAGAAA-GTGGTTATGCACAGGGTGTGGTTTCAGCAAGATGGAGCAACACCACGCACA--T-----CTACAGAAGTTC
gi|6 : ggtgtttcataatatatgttacagaaacgacagtgtattacagatgatgggaatgtattttgttgtgtataatacatcaaattaacaagcaattaaacaaattttatatggcactgaaagttcgagaaaaataacgacgtcatgacgtcatgaatgacatttctgacgacatcaattcaggtgtttgtttacaaatggcgctgtccacagaaatgcacagagacattattaagtacttttatgaatgttaatatgttgctaaagttctcagaagaatgcaaaaaaatgtacccagaggaaaaaagtctaaacagaatgcaagttcatcgaatagtacggaaatctgagcaaacggggtcggttttagaccagcgtcacagtaatgccaggagaccaaggagcgctcgatctgatgagaacatcggtagtgtgagagcttctgttgcagaaacacctcacctctgcaagaaagatagtttacgatgtttctaaagcttgtgcttcaactgtatacaggattctacgatttgaactgaaacttattccatataaaatatcttttatgaaatatttgaagaaatcagacattgactattgtttgcaaactggataaaggaccaacagcatgttccggaagtactgtggtttagcccatttttaccttgatgccGCTGAAAAGTCGTTGCATGCTGAAAAAGTAAC----------CGTAATGGCCGCACTGAGTTCAACTGGACTAATTAGGCCATTTTTCTTTGAAAACACTGATGGTGAAACAGAATC-GATAAACAACTGTCGATATTTAGAT---GTCGTACAGAAGAAATTCATTCCGGCATTAAAGAGGAGGAAA-GTGAATATGCACAGGATGTGGTTTCAGCAAGATGGAGCAACACCACACACA--T-----CTACAGAAGTTCTAGCTTGGCTAAAGAAGACATTTGGCAC-CAGATTT--C-TGTCTTTCAGAAC--AGATCAAT-GT------TGGCC--ACTCCATTCCCCTGACCTCAACC--CGTTGGACTTCTTTCTGTGAG-GTTA-ACT-T-AAAGACAGGGTGTATCAATGCAAAC--CAACATGTGTT---------GAA-AAGTTGAAAGCATCA---ATCAAGAGAGAGT--TCCAAACTGTATCAGCTGAAACTTGTCCAG--CAGTAATA----------GAAAACTAAT-TGACGTCGTTATTCGTCAAAACGGACGTCACTTGGAACA-CA---TCA-TCTGAAAATTAAATT-TTATGAAATTTCT-GACTAACACCTCA-TTTTTCAAGCAAAATT--GACATATTTCAAA-------TGTAA-TAAAAT------TTTGAAA-TGTCCTCTTTAAAATTGTA---TTTTCTGTTTTTACATATT---GTA--T--------AAAACAAT--GCAAATTATAAACCCACGAAACTGTAACATATATTTTG-AAACACCCTGTAac
gi|16 : TAGCTTGAGAAGGCATTTGGTGA-CA-ATGT--CATTTCTTTCAAGAC--AGAGAAAG-AG------TGGTT--TCTCCATTCACACGATATTAACCATC-TTGG--TTATTA-TTTGAGAGATA-CTTAT-AAAGGCAGAATATATAAA--CAAACACCAACTCCCG-----------GAATGAATTGAAAGTGGCT---ATTGGAAGAAAAA--TGAGATTAGTATCAACTGAAAC--ATGCAGATCAGTAATAAAAAACTTTAAGAAACG
gi|23 : -CAGTTTA--T-TATCTT-CAAAACCCAGA---ATGTC------TAGCCTAACTCC----CCCCAACCATAACT--CTCTGGTCTTCTTTTTGTGGG-GTTA-TTT-G-AAGGACTAAGTTTA------CAAAC--CAACtttagagtggctatcacacagaagggac
gi|9 : ggGGTTT--C-TGTCTTTCAAGGC--GGACCAAT-TT------TGGCG--ACCCCACTCCCCAAATCTCAACC--CGCTGGACTTCTTCCTGTGGG-GTTA-TCT-T--AAGGCAGTGT-CAT-AGTGTAAAC--CAACATGTGTTGATCACCCGGAA-TAGTTGAAAACATCA---ATCAA-ATAAAAA--TCCAAACAGTATCCTCTGAAACCTGTGTAG--AAATGGTAGAGACCTTTGTGAAAC-ACTGTGACGCCGTTATTCGTCAGAAAGGACGTCACTTAGAACA-TA---TTATTTTGAAAATGACATT-TGAT-AAATATATAGATTGTGATCACA-GCTT--------------GACATGTTACATA-------TGGAA-TGAAAC------TTTGAAC-TGTTTTCTTTCAAATGGTG---TTTTCAGTTTTTACATATT---GCA--T--AGATCTAAATAAATAAGCAAATTACAAtcccaaacaattaactgaagaa
gi|22 : ATACAAAC--GAACATGTATG---------GAA-GAGTTAAAA---TCA----TCAAGAGGGAAT--TCCCAACAGTATCAGCTGAAATTTTTGCAG--CAATGCTAGAGATC-TTGGAAAAAGATG-TGATGTCGTTATTCATCAAAACGGACGTCATTTTGAACA-C----TCA-TCTGAAAATTAAA
gi|11 : taaac---------GAG-GAGTTGAAAGTATCA---ATCAAGAGAGAAT--TCCTAACAGTATCAGCTGAAATTTGTGCTG--CAGCGGCAAAGAACTGT------CG--T-TAA---A---ATTCATCAGAATGGGCATCAATTTGAACA-TA---TCA-TATGAAAATGATATT-TTGT-AAGGTACA-GACTGATATCATG-TTTTTCAAACAATCTT--GACATGTTGTATAC------TATAACTGGAATAACCTTTTTGGAA-TGTCCTCTTTTAAATGGTG---TTTA-------TATATAGT---GTA--T--A-----AATTAA----GCAAATTATAACCCCCGGAAACTGTAACATATATTTTG-AGACACCCTGT
gi|3 : TTGTAAACA-CATGCATCAAGAGAGAGT--TCCAAACAGTATCAGCTGAAA
gi|7 : gtataggttgtttcaaaatatatgttacagtttcgtgggtttataattagcatttttttatataatacgtaaaaacagaaaacacaattttaaagaggacatttaaaaaatttattacaaatgcaatatgtcaattttacttgaaaaatgagatattggtcagaaatttcataaaatttga---ATTAAGAGAGAGT--TCCAAACAGTATCAGCTGAAACTTGTGCAG--CAGTAATAGAGAACTCTGGAAAACTAAT-TGATGTCGTTATTCGTCAAAACGGACGTCACTTGGAACA-CA---TCA-TCTGAAAATTAAATT-TTATGAAAGTTCT-GACCAACATCTCA-TTTTTCAAGCAAAATT--GACATATTGCATA-------TGTAA-TAAAAT------TTTAAAA-TGTCTTTTTTAAAATTGTGTTTTTTTCTGTTTTTACATATT---ATA--T--------AAAAATAT--GCAAATAATAAACCCATGAAACTGTAACATATATTTTG-AAACACCCTacagaacttccgcttttggggaagtgaaaaccaaaacatttacgctgaaaagtcgttgcatgctgaaaaagtaaccgtgtgggccgcactcagttcaactggactaattaggccgtttttctttgaaaacagtgatggtgaaaccgaaacgataaacagctgtcgatattttgatgtgacgcagaagaaattcattccggcattaaagaagaggaaagtgaatatgcacaggatgtggtttcagcaagacatagcaacaccacacacatctacagaagttctggcatggctaaagaatacatatggcaccagatttctgtctttcagaacagatcaaatttggccaccccattcatctgacctcaacccgttagacttctttatgtgaggttatcttaaagacagggtgtatcaatgcacaccaacatgtgttgaagggttgaaagcatcaatcaagagagagttccaaacagtatcagctgaaacttgtgcagcagtaatagagaactttggaaaacgaattgacgtcgttattcgtcaaaacggacgtcacttggaacacatcatctgaaaattaaattttatgaaatttctaactaacatctcattttttcaagcaaaattgacatatttcatatgtaataaaattttgaaatgtcctctttaaagtgttttctgttttaacatattgtataaaaaaatgcaaattataaaccaacaaaactgtaacatatattttgaaacaccctgta
gi|14 : GT--TCCAAACAGTATCAGCTGAAACTTGTGCAG--CAGTAATAGAGAACTCTGG---------------------------AAAACGGACGTCACTTGGAACA-CA---TCA-TCTGAAAATTAAATT-TTAT--AATTTCT-GACCAACATCTCA-TTTTTCAAGCAAAATT--GACATATACCATAATTATTATGTAA-TACAAT------TTTGAAA-TGTCCTCTTTAAAATTGTG---TTTTCTGTTTTTACATATT---ATA--TTAA-----AAAAAAAT--GCAAATTATAAAGCCATGAAACTGTAACATATATTTTG-AAACACCCTGTAgcatgtgtttataaacagaacttccgcttttggggaagtgaaaatccaaacttttacgctgaaaagtcgttgcatgctgaaaaagtagccgtaatggccacattgagttcaactggactaattaggccatttttctttgaaaacactgatggtgaaacagaaacgataaacagttgtcgatatttagatgtcatgcagaagaaattcattctggcatta
gi|13 : AACAGTATCAGCTGAAACTTGTGCAG--CAGTAATAGAGAACTCTGAAAAACTAAC-TGAACTCGTTATTCGTCAAAACGGACGTCACTTGGAACA-AA---TCA-TCTGAAAATTAAATT-TTATGAAATTTCT-GGCCAACATCTCA-TTTTTCAAGCAAAATT--GACATATTGCATA-------TGTAA-TAAAAT------TTAAAAATTTTCTTCTCTAAAATTGTG---TTTTCTGTATTTACATATT---ATA--T--------AAAAAAAT--GCAAATTATAAACCCACAAAACTGTAACATATATTTTGAAAAAATCCTG
gi|15 : GAAACTTGTGCAG--CAGTAATAGAGAACTTTGGAAAACGAAT-TGACGTCGTTATTCGTCAAAACGGACGTCACTTGGAACA-CA---TCA-TCTGAAAATTAA-TTTTTATGAAATTTCT-GACTAACATCTCA-TTTTCCAAGCAAAATT--GACATATTTCATA-------TGTAA-TAAAAT------TTTGAAA-TGTCCTCTTTAAAATTGTG---TTTTCTGTTGTTACATATT---GTA--T---------AAAAAAT--GCAAATTATAAACCCACGAAACTGTTACATATATTTTG-AAACACCCTGTA
gi|20 : TCACTTGGAACA-CA---TTA-TCTGGAAATTAAATT-TTATGAAATTTTT-GACCAACATCTCA-TTTTTCAAGCAAA-----------TTGCATA-------TGTAA-AAAAAA------TTGGAAA-TGTCCATTTTAAAATTGTG---TTTTCTGTTTTTACATATT---GTA--T--A-------AAAAGT--GCAAATTATAAACCCACGAAACTGTAACATATACTTTG-AGAGACCCTGTA
gi|3 : AACAGTA---TCA-GCTGAAA-TCAAATT-TTATGAAATTTCT-GACCAATATCTCA-TTTTTCAAGTAAAATT--GACATATTGCATT-------TGTAA-TAAATT------TTTTAAA-TGTCCTCTTTAAAATTGTG---TTTTCTGTTTTTACGTATT---ATA--T--------AAAAAAAT--GCTAATTATAAACCCACGAAACTGTAACATATATTTTG-AAACAACCTATAac
gi|19 : gAATA-CAATTTCA-TC--GAAATGACATT-TTATAAAGGCATG-GACTAAGATCAGC-TTTTTTAAAAACAATCTTGATATATTGTATA-------TGGAA-TAACGT------TTAGAAA-TGTACTATTTCAAATGGTG---ATTTCTGTTTTTACATTTTCCCGTAATT--A-----A---------GCAAATTATAAACCCATGAAACTCCAACATATATTTTG-AAACGCCCTGtggaactctctcttgatgcatgtgtttacaaacagaacttccgcttttggggaagtgaaaaccaaaacatttacgctgaaaagtcgttgcatgctgaaaaagtaaccgtgtgggccgcactcagttcaactggactaattaggccgtttttctttgaaaacagtgatggtgaaaccgaaacgataaacagctgtcgatattttgatgtgacgcagaagaaattcattccggcattaaagaagaggaaagtgaatatgcacaggatgtggtttcagcaagacatagcaacaccacacacatctacagaagttctggcatggctaaagaatacatatggcaccagatttctgtctttcagaacagatcaaatttggccaccccattcatctgacctcaacccgttagacttctttatgtgaggttatcttaaagacagggtgtatcaatgcacaccaacatgtgttgaagggttgaaagcatcaatcaagagagagttccaaacagtatcagctgaaacttgtgcagcagtaatagagaactttggaaaacgaattgacgtcgttattcgtcaaaacggacgtcacttggaacacatcatctgaaaattaaattttatgaaatttctaactaacatctcattttttcaagcaaaattgacatatttcatatgtaataaaattttgaaatgtcctctttaaagtgttttctgttttaacatattgtataaaaaaatgcaaattataaaccaacaaaactgtaacatatattttgaaacaccctgta
gi|24 : TTCAAATGGTG---TTTTCTGCTTTTCTATATT---GCA--T--A-----AATTAAA----CAAATTATTCACCCATGAAACTGTAACATACATTTTG-AAACACCCT
gi|1 : aACTGTAACATATATTAC--AAGCACCCTGT
gi|21 : ACTGTAACATATACTATG-AAACACCCTGTaacgactgtgtattacagataagtaggaaagtaatttgctttgtataatgctttgtataaaacatcaaattaacaaacaattaaccaaattttatatggcactgaaagttcggggaaaattacgacgtcaagatgttatcaaatcaggtgtttgattacaaatggcactgtccacagaaatgcacagcgacatttttaagctcttttatgaaagtacatctgttgttaacgttgtaagaagaatgcagaaaatgtacccagaggaagaaagacgcaacagaattcaagttcatcgaaaagaacgacattctgaacaaacgggatcggttttaaaccagcgccacagtaatgccgggagaccaaggagcgcttggtctgatgagaacatggctagtgtgagagcttctgttgtagaaacacctcagcagtctgtaagacagatactttacgatgtttctaacgcaagtgcatcaacagtatacaggattctacgaattgacctgaaatcagacattgactaaaggttatcgtttgcaaacttggttaaggaccattacatgtttcgatgtattatggtttagcgacgaagcctatcttgatgaatgtgttaaacagaacttacgccttttggagaagtgaaaaaccaaacatttacgctgaaaagtcattgcatgctgaaacagtaaccgcactcagttcttctttattaattgggtcgtttttctttgaaaacagtgatggtgatacagaaacgataaacagctgtcgacatttggatcacatcacgaagaagaaatgcattccggaattaaacagtaggaaagttgatatgaacaggatgtgggttcatgaagatggagcaataccacaaatatatagactacagaagttctagcttcggtaaagaagacatttggcatcatatttctgtgtttcagaacggatcaattgcggccaccacaatcccctgacctcaacccgttgtacttctttctgtggggttaaagacagggtatataactgcaaaccaacatgtgtggaagagttaaaagcataaaaaaggagaattctccaaa
5 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|10 ): TACATTGCGTTTCAAATATATATACACTAACGACTGCGTAACACAGATTACTGTGAGAGTATTTTGCTGTGTATACTGTATCAAAATAACAGGCACATAAGCAAATTTATTATAGCACCAATAGTTTGGGATAGTTATGGCGTAATCTGTGACGTCATCTAAACAATATTTTGTTTTGACAATAGCGCTGTCCACAGAAAGGCACATATACATTATTAGGCTATTCTGTTGTTACTGTTGTAAGAAAAATGCAAAAGCTATACCCAGAGAAAGAAAGATTTAGCAGAATACAATTTCATCGAAATGACATTTTATAAAGGCATGGACTAAGATCAG
Unaligned ( gi|12 ): CAGGGTGGTTCAAATGTACAGTTATGACTGCATATTACAGATTAATGTGTTAGTATTGTTGTGTATACTATATTGAAAAAACAAGCATAGAACCAAATTATATATGGCACTAAAAGTTCGGGAAAAATTATAATGTCATGATGTCATCTATGATGTCATCTGATCAGGTGTTTTCACAGTGGGGCTGTTCACAAAATTGTTAGGCTCTATTATGAATGTTATTTTCTTGTTACTGTTGTAAGAAAAATGTAAAAACTATACCTAGAGGAAGAGAGATTCAGCAGAATGCAAGTT
Unaligned ( gi|17 ): TTTAAACCAACGACATTGTAATGGCGGCAGACCAAGTAGCATCATGTCTGACGAAAACATAGCCAGTGTGAAGTCTACTATTGCAGAACCACCACGACAGCCTGCAGAAAGGTCACGAGGTTTCATACACAAGTACACCGTTGCAGTATTTTTCGGTTTGACCGAAAACTTACTATATCTACATATGACATTATTGCTTATGTAGCAATTGAAGAAAGAAGACATTGACT
Unaligned ( gi|18 ): TACAAGGTGTTTCAAACTATTTGTTGCAGTAACGACAGCGTATTACAGTAATTTGTAAGTATTATTTTTGTGTATACTAATGGAATTAACTAGAACAGAGCCAATTATTATGGTATTAAGAAGAAAATGACGTAATCTAAGTGGATGTTCGGTTTTGCAATGACACTGTTCACAGAAAGACATGGGAAAACTATTAAGCACTATTATGTATG
Unaligned ( gi|25 ): AACAGGCGGTTTCATAATATATGTTAAAATAAATACTGTGTAGTACAGATTAATGAGAAAGTA
Alignments
lowQualScore : 111 2222222 1 3 33333 1111 11111 11111111 111111 111111111 111111 222222
lowQualScore : 4 0 66 66 888 000 6 1111111 6 3 0 99 0 5 0 99999 6 1111 6 6 55 0 22222 5 0 0 888 3 5 55555555 1 66 5 66 5 444444 4 66 0 1 4 0 55 4 4 4 1 88 0 55 777777777 4 66 66 1 0 1 0 5 888 777 4 4 6 5 0 5 66 7 5 5 444444 0 3 888 66 888888 00 0 66
lowQualScore : . . .. .. ... ... . ....... . . . .. . . . ..... . .... . . .. . ..... . . . ... . . ........ . .. . .. . ...... . .. . . . . .. . . . . .. . .. ......... . .. .. . . . . . ... ... . . . . . . .. . . . ...... . . ... .. ...... .. . ..
lowQualScore : 0 1 99 99 888 000 7 7777777 7 2 2 00 8 0 0 22222 7 2222 7 3 00 2 55555 0 2 2 888 1 7 33333333 7 77 6 99 0 444444 4 11 1 0 4 9 33 4 4 4 0 66 7 55 888888888 4 11 11 9 1 1 2 0 888 888 4 4 5 0 8 0 99 6 0 0 444444 2 0 888 99 000000 88 1 99
consensus : TACAGGGTGTTT-CAAAATATATGTTACAGTTTCGTGGGTTTATAA--TTTGCATTTT--TTT---ATATAATATGTAAAAACAGAAAA---CACAATTTTAAAGAGGACA-TTTCAAAATTTTATTACATA-------TGCAATATGTCAATTTTGCTTGAAAAATGAGATGTTGGTCAGAAATTTCATAAAATTTAATTTTCAGATGATG-TGTTCCAAGTGACGTCCGTTTTGACGAATAACGACGTCAATTAGTTTTCCAGAGTTCTCTATTACTGCTGCACAAGTTTCAGCTGATACTGTTTGGAACTCTCTCTTGATGCATGAT-GTTTA--CAAACAGAACTTCCGC-TTTTGGGGAAGTGAAAAACCAAACATTTACGCTGAAAAGTCGTTGCATGCTGAAAAAGTAACCGTGNGGGCCGCA-----CTCAGTTCAACTGGACTAATTAGGCCGTTTTTCTTTGAAAACAGTGATGGTGAAACAGAAAC-GATAAACAGCTGTCGATATTTGGAT---GTCATGCAGAAGAAATTCATTCCGGCATTAAAGAGGAGGAAA-GTGGATATGCACAGGATGTGGTTTCAGCAAGATGGAGCAACACCACACACA--T-----CTACAGAAGTTCTAGCATGGCTAAAGAAGACATTTGGCA-NCAGATTT--C-TGTCTTTCAGAACGGATCAATTT------TGGCCACCCCATTCCCCCGACCTCAACC--CGTTGGACTTCTT-TCTGTGGGGTTA-TCT-T-AAAGACAGGGTNTATCAATGCAAAC--CAACATGTGTTGA---------A-GAGTTGAAAGCATCAATCAAGAGAGAGT--TCCAAACAGTATCAGCTGAAACTTGTGCAG--CAGTAATAGAGAACTTTGGAAAACGAAT-TGACGTCGTTA---TTCGTCAAAACGGACGTCACTTGGAACACA---TCATCT-GAAAATTAAATT-TTATGAAATTTCT-GACTAACATCTCA-TTTTTCAAGCAAAAT--TGACATATTTCATA-TGTAA-TAAAAT------TTTGAAATGTCCTCTTTAAAATTGTGTTTTCTGTTTTTACATATT---GTA--TA-----AAAAAAAT--GCAAATTATAAACCCACGAAACTGTAACATATATTTTGAAACACCCTGTA
Reference ( family-2302 ) : TACAGGGTGTTT-CAAAATATATGTTACAGTTTCGTGGGTTTATAA--TTTGCATTTT--TTT---ATACAATATGTAAAAACAGAAAA---CACAATTTTAAAGAGGACA-TTTCAAAATTTTATTACATA-------TGCAATATGTCAATTTTGCTTGAAAAATGAGATGTTGGTCAGAAATTTCATAAAATTTAATTTTCAGATGATG-TGTTCCAAGTGACGTCCGTTTTGACGAATAACGACGTCAATTCGTTTTCCAGAGTTCTCTATTACTGCTGCACAAGTTTCAGCTGATACTGTTTGGAACTC-CTCTTGATG-ATGAT-GTTTN--CAAACAGAACTTCCGC-TTTTGGGGAAGTGAAAAACCAAACGTTTACGCTGAAAAGTCGTTGCATGCTGAAAAAGTAACCGTGNGGGCCGCA-----CTCAGTTCAACTGGACTAATTGGGCCGTTTTTCTTTGAAAACAGTGATGGTGAAACAGAAAC-GATAAACAGCTGTCGATATTTGGAT---GTCACGCAGAAGAAATTCATTCCGGCATTAAAGAGGAGGAAA-GTGGATATGCACAGGATGTGGTTTCAGCAAGATGGAGCAACACCACACACA--T-----CTACAGAAGTTCTAGCATGGCTAAAGAAGACATTTGGCA-NCAGATTT--C-TGTCTTTCAGAACGGATCAATTT------TGGCCACCCCATTCCCCCGACCTCAACC--CGTTGGACTTCTT-TCTGTGGGGTTA-TCT-T-AAAGACAGGGTNTATCAATGCAAAC--CAACATGTGTTGA---------A-GAGTTGAAAGCATCAATCAAGAGAGAGT--TCCAAACAGTATCAGCTGAAACTTGTGCAG--CAGTAATAGAGAACTTTGGAAAACGAAT-TGACGTCGTTA---TTCGTCAAAACGGACGTCACTTGGAACACA---TCATCT-GAAAATTAAATT-TTATGAAATTTCT-GACTAACATCTCA-TTTTTCAAGCAAAAT--TGACATATTGCATA-TGTAA-TAAAAT------TTTGAAATGTCCTCTTTAAAATTGTGTTTTCTGTTTTTACATATT---GTA--TA-----AAAAAAAT--GCAAATTATAAACCCACGAAACTGTAACATATATTTTGAAACACCCTGTA
gi|1 : TCTTGATG-A--AT-GTGTT---AAACAGAACTTACGCCTTTTGGAGAAGTGAAAAACCAAACATTTACGCTGAAAAGTCATTGCATGCTGAAACAGTAACCG---------CA-----CTCAGTTCTTCTTTATTAATTGGGTCGTTTTTCTTTGAAAACAGTGATGGTGATACAGAAAC-GATAAACAGCTGTCGACATTTGGATCACATCACGAAGAAGAAATGCATTCCGGAATTAAACAGTAGGAAA-GTTGATATGAACAGGATGTGGGTTCATGAAGATGGAGCAATACCACAAATA--TATAGACTACAGAAGTTCTAGCTTCGGTAAAGAAGACATTTGGCA-TCATATTT--C-TGTGTTTCAGAACGGATCAATTG------CGGCCACCACAATCCCCTGACCTCAACC--CGTTGTACTTCTT-TCTGTGGGG------T-T-AAAGACAGGGTATATAACTGCAAAC--CAACATGTGTGGA---------A-GAGTTAAAAGCATAAA--AAAGGAGAATTCTCCAAA
gi|10 : acagggtgcttgtaatatatgttacagtaacgactgtgtattacagataagtaggaaagtaatttgctttgtataatgctttgtataaaacatcaaattaacaaacaattaaccaaattttatatggcactgaaagttcggggaaaattacgacgtcaagatgttatcaaatcaggtgtttgattacaaatggcactgtccacagaaatgcacagcgacatttttaagctcttttatgaaagtacatctgttgttaacgttgtaagaagaatgcagaaaatgtacccagaggaagaaagacgcaacagaattcaagttcatcgaaaagaacgacattctgaacaaacgggatcggttttaaaccagcgccacagtaatgccgggagaccaaggagcgcttggtctgatgagaacatggctagtgtgagagcttctgttgtagaaacacctcagcagtctgtaagacagatactttacgatgtttctaacgcaagtgcatcaacagtatacaggattctacgaattgacctgaaatcagacattgactaaaggttatcgtttgcaaacttggttaaggaccattacatgtttcgatgtattatggtttagcgacgaagcctaTGGGT--ATAGCTTTTGCATTTT--TCT----TACAACA-GTAACAACAGAA
gi|11 : tacattgcgtttcaaatatatatacactaacgactgcgtaacacagattactgtgagagtattttgctgtgtatactgtatcaaaataacaggcacataagcaaatttattatagcaccaatagtttgggatagttatggcgtaatctgtgacgtcatctaaacaatattttgttttgacaatagcgctgtccacagaaaggcacatatacattattaggctaGA---------G-GAGTTGAAAGTATCAATCAAGAGAGAAT--TCCTAACAGTATCAGCTGAAATTTGTGCTG--CAGCGGCAAAGAACT------------------GTCGTTAAAATTCATCAGAATGGGCATCAATTTGAACATA---TCATAT-GAAAATGATATT-TTGT-AAGGTACA-GACTGATATCATG-TTTTTCAAACAATCT--TGACATGTTGTATACTATAACTGGAATAACCTTTTTGGAATGTCCTCTTTTAAATGGTGTTTA-------TATATAGT---GTA--TA-----AATTAA----GCAAATTATAACCCCCGGAAACTGTAACATATATTTTGAGACACCCTGTgagaaagaaagatttagcagaatacaatttcatcgaaatgacattttataaaggcatggactaagatcag
gi|13 : CAGGATTTTTTCAAAATATATGTTACAGTTTTGTGGGTTTATAA--TTTGCATTTT--TTT---ATATAATATGTAAATACAGAAAA---CACAATTTTAGAGAAGAAAATTTTTAAATTTTATTACATA-------TGCAATATGTCAATTTTGCTTGAAAAATGAGATGTTGGCCAGAAATTTCATAAAATTTAATTTTCAGATGATT-TGTTCCAAGTGACGTCCGTTTTGACGAATAACGAGTTCAGTTAGTTTTTCAGAGTTCTCTATTACTGCTGCACAAGTTTCAGCTGATACTGTT
gi|14 : TACAGGGTGTTT-CAAAATATATGTTACAGTTTCATGGCTTTATAA--TTTGCATTTT--TTTTTAATATAATATGTAAAAACAGAAAA---CACAATTTTAAAGAGGACA-TTTCAAAATTGTATTACATAATAATTATGGTATATGTCAATTTTGCTTGAAAAATGAGATGTTGGTCAGAAATT--ATAAAATTTAATTTTCAGATGATG-TGTTCCAAGTGACGTCCGT--------------------------TTTCCAGAGTTCTCTATTACTGCTGCACAAGTTTCAGCTGATACTGTTTGGAAC
gi|15 : GAAACTTGTGCAG--CAGTAATAGAGAACTTTGGAAAACGAAT-TGACGTCGTTA---TTCGTCAAAACGGACGTCACTTGGAACACA---TCATCT-GAAAATTAATTT-TTATGAAATTTCT-GACTAACATCTCA-TTTTCCAAGCAAAAT--TGACATATTTCATA-TGTAA-TAAAAT------TTTGAAATGTCCTCTTTAAAATTGTGTTTTCTGTTGTTACATATT---GTA--T-------AAAAAAT--GCAAATTATAAACCCACGAAACTGTTACATATATTTTGAAACACCCTGTA
gi|16 : TAGCTTGAGAAGGCATTTGGTG-ACA-ATGT--CATTTCTTTCAAGACAGAGAAAGAG------TGGTTTCTCCATTCACACGATATTAACCATC-TTGG--TTATTATTTGAGAGAT-A-CTTAT-AAAGGCAGAATATATAAA--CAAACACCAACTCCCG--GA---------ATGAATTGAAAGTGGCTATTGGAAGAAAAA--TGAGATTAGTATCAACTGAAAC--ATGCAGATCAGTAATAAAAAACTTTAAGAAACG
gi|18 : TACAAGGTGTTT-CAAACTATTTGTTGCAGTtttagagtggctatcacacagaagggac
gi|19 : AATACAATTTCATC---GAAATGACATT-TTATAAAGGCATG-GACTAAGATCAGC-TTTTTTAAAAACAATCTTGATATATTGTATA-TGGAA-TAACGT------TTAGAAATGTACTATTTCAAATGGTGATTTCTGTTTTTACATTTTCCCGTAATTA-----A---------GCAAATTATAAACCCATGAAACTCCAACATATATTTTGAAACGCCCTGaacgacagcgtattacagtaatttgtaagtattatttttgtgtatactaatggaattaactagaacagagccaattattatggtattaagaagaaaatgacgtaatctaagtggatgttcggttttgcaatgacactgttcacagaaagacatgggaaaactattaagcactattatgtatg
gi|2 : TACAGGGTGTTT-CAAAATATATGTTACAGTTTCATGGGTTTATAA--TTTGCATTTT--TTT---ATATAATATGTAAAAAAAGAAAA---CACAATTTTAAAGAGGACA-TTTCAAAATTTTATTACATA-------TGCAATATGTCAATTTTGCTTGAAAAATGAGATGTTGGTCAGAAATTTCATAAAATTTAATTTTCAGATGATG-TGTTCCAAGTGACGTCCGTTTTGACGAATAACAACGTCAATTAGTTTCCCAGAGTTCTCTATTACTGTTGCACAAGTTTCAGTTGATACTGTTTGGAACTC-ATCTTGATGCATG-T-GTTTA--CAAACAGAACTTCCGC-TTTTGGGGAATTGAAAAACCAAACATTTACGCTGAAAAGTCGTTGCGTGCTGAAAAAGTAACCGCAAGGGCCACA-----CTCAGTTCAACTGGACTAATTAGGCCGTTTTTCTTTGAAAACAGTGATGATGAAACAGAAAC-GATAAACAGCTGTCGATATTTGGAT---GTCATGCAGAAGAAATTCATTCCGGCATTAAAGAGGAGGAAA-GTGAATATGCACAGGATGTGGTTTCAGCAAGATGGAGCAACACCACACACA--T-----CTACAGAAGTTCTAGCATGGCTAAAGAAGACATTTGGCA-TCAGATTT--C-TGTCTTTCAGAACAGATCAATTT------TGGCCACCCCATTCCCCTGACCTCAACC--CGTTGGACTTCTT-AATGTGAGGTTA-TCT-T-AAAGACAGGGTGTATCAATGCAAAC--CAACATGTGTTGA---------A-GAGTTGAAAGCATCAATCAAGAGAGAGT--TCCAAACAGTATCAGCTGAAACTTGTGCAG--CAGTAATAAAGAACTTTGGAAAACGAAT-TGACGTAGTTA---TTCGTCAAAACGGACGTCACTTGGAACACA---TCATCT-GAAAATTAAATTGTTATGAAATTTCT-GACTAACATCTCA-TTTTTCAAGCAAAAT--AGACATATTTCATA-TGTAA-TAAAAT------TTTGAAATGTCCTCTTTAAAATTGTGTTTTCTGTTTTTACATATT---GTA--TA-----AAAAAAAT--GCAAATTATAAACCTACGAAACTGTAACATATATTTTGAAACACCCTGTA
gi|20 : TACAGGGTCTCT-CAAAGTATATGTTACAGTTTCGTGGGTTTATAA--TTTGCACTTT--TT----ATACAATATGTAAAAACAGAAAA---CACAATTTTAAAATGGACA-TTTCCAATTTTTTTTACATA-------TGCAAT---------TTGCTTGAAAAATGAGATGTTGGTCAAAAATTTCATAAAATTTAATTTCCAGATAATG-TGTTCCAAGTGA
gi|21 : ACAGGGTGTTT-CATAGTATATGTTACAGTac
gi|22 : ATACAAAC--GAACATGTATGGA---------A-GAGTTAAAA---TCA-TCAAGAGGGAAT--TCCCAACAGTATCAGCTGAAATTTTTGCAG--CAATGCTAGAGATC-TTGGAAAAAGATG-TGATGTCGTTA---TTCATCAAAACGGACGTCATTTTGAACAC----TCATCT-GAAAATTAAAGT-TTAaacaactgcgtattacagataaatggacagtattttgctgcgtattttacctcaaataaacaagcaattaaccaaattgtatatggcactgaaaggtttttgaaaatatttctttgagtgtcctgtgtcctgactgagtgttatcacgtattttc
gi|23 : TCCCCCCAACCATAACT--CTCTGGTCTTCTT-TTTGTGGGGTTA-TTT-G-AAGGACTAAGTTTA------CAAAC--CAAC
gi|24 : ggcagtttattatcttcaaaacccagaatgtctagcctaacAGGGTGTTT-CAAAATGTATGTTACAGTTTCATGGGTGAATAA--TTTG---TTTAATTT---ATGCAATATAGAAAAGCAGAAAA---CACCATTTGAAtcccaaacaattaactgaagaa
gi|3 : aTATAGGTTGTTT-CAAAATATATGTTACAGTTTCGTGGGTTTATAA--TTAGCATTTT--TTT---ATATAATACGTAAAAACAGAAAA---CACAATTTTAAAGAGGACA-TTTAAAAAATTTATTACAAA-------TGCAATATGTCAATTTTACTTGAAAAATGAGATATTGGTCAGAAATTTCATAAAATTTGA-TTTCAGCTGATACTGTT
gi|3 : gTTTCAGCTGATACTGTTTGGAACTCTCTCTTGATGCATG-T-GTTTA--CAAACAGAACTTCCGC-TTTTGGGGAAGTGAAAACCAAAACATTTACGCTGAAAAGTCGTTGCATGCTGAAAAAGTAACCGTGTGGGCCGCA-----CTCAGTTCAACTGGACTAATTAGGCCGTTTTTCTTTGAAAACAGTGATGGTGAAACCGAAAC-GATAAACAGCTGTCGATATTTTGAT---GTGACGCAGAAGAAATTCATTCCGGCATTAAAGAAGAGGAAA-GTGAATATGCACAGGATGTGGTTTCAGCAAGACATAGCAACACCACACACA--T-----CTACAGAAGTTCTGGCATGGCTAAAGAATACATATGGCA-CCAGATTT--C-TGTCTTTCAGAACAGATCAAATT------TGGCCACCCCATTCATCTGACCTCAACC--CGTTAGACTTCTT-TATGTGAGGTTA-TCT-T-AAAGACAGGGTGTATCAATGCACAC--CAACATGTGTTGA---------A-GGGTTGAAAGCATCAATCAAGAGAGAGT--TCCAAACAGTATCAGCTGAAACTTGTGCAG--CAGTAATAGAGAACTTTGGAAAACGAAT-TGACGTCGTTA---TTCGTCAAAACGGACGTCACTTGGAACACA---TCATCT-GAAAATTAAATT-TTATGAAATTTCT-AACTAACATCTCATTTTTTCAAGCAAAAT--TGACATATTTCATA-TGTAA-TAAAAT------TTTGAAATGTCCTCTTTAAA---GTGTTTTCTGTTTTAACATATT---GTA--T------AAAAAAAT--GCAAATTATAAACCAACAAAACTGTAACATATATTTTGAAACACCCTGTAtggaactctctcttgatgcatgtgtttacaaacagaacttccgcttttggggaagtgaaaaccaaaacatttacgctgaaaagtcgttgcatgctgaaaaagtaaccgtgtgggccgcactcagttcaactggactaattaggccgtttttctttgaaaacagtgatggtgaaaccgaaacgataaacagctgtcgatattttgatgtgacgcagaagaaattcattccggcattaaagaagaggaaagtgaatatgcacaggatgtggtttcagcaagacatagcaacaccacacacatctacagaagttctggcatggctaaagaatacatatggcaccagatttctgtctttcagaacagatcaaatttggccaccccattcatctgacctcaacccgttagacttctttatgtgaggttatcttaaagacagggtgtatcaatgcacaccaacatgtgttgaagggttgaaagcatcaatcaagagagagttccaaacagtatcagctgaaacttgtgcagcagtaatagagaactttggaaaacgaattgacgtcgttattcgtcaaaacggacgtcacttggaacacatcatctgaaaattaaattttatgaaatttctaactaacatctcattttttcaagcaaaattgacatatttcatatgtaataaaattttgaaatgtcctctttaaagtgttttctgttttaacatattgtataaaaaaatgcaaattataaaccaacaaaactgtaacatatattttgaaacaccctgta
gi|4 : gtataggttgtttcaaaatatatgttacagtttcgtgggtttataattagcatttttttatataatacgtaaaaacagaaaacacaattttaaagaggacatttaaaaaatttattacaaatgcaatatgtcaattttacttgaaaaatgagatattggtcagaaatttcataaaatttgaGGTGTTT-CATAATATATGTTACAG
gi|4 : AAACCAAACATTTACTCTGAAAAGTCGTTGCATGCTGAAAAAGTAACCGTGTGGGCCTAA-----CTCAGTTCAACAGGACTAATTGGGCCGTTTTCCTTTGAAAACAGTGATGGTGAAACAGAAAC-GATAAACAGTTGTTGATATTTGGAT---GTTATGCAGTAGAAATTCATTCCGGCATTAAAGAGGGAGAAA-GTGGTTATGCACAGGGTGTGGTTTCAGCAAGATGGAGCAACACCACGCACA--T-----CTACAGAAGTTCaaacgacagtgtattacagatgatgggaatgtattttgttgtgtataatacatcaaattaacaagcaattaaacaaattttatatggcactgaaagttcgagaaaaataacgacgtcatgacgtcatgaatgacatttctgacgacatcaattcaggtgtttgtttacaaatggcgctgtccacagaaatgcacagagacattattaagtacttttatgaatgttaatatgttgctaaagttctcagaagaatgcaaaaaaatgtacccagaggaaaaaagtctaaacagaatgcaagttcatcgaatagtacggaaatctgagcaaacggggtcggttttagaccagcgtcacagtaatgccaggagaccaaggagcgctcgatctgatgagaacatcggtagtgtgagagcttctgttgcagaaacacctcacctctgcaagaaagatagtttacgatgtttctaaagcttgtgcttcaactgtatacaggattctacgatttgaactgaaacttattccatataaaatatcttttatgaaatatttgaagaaatcagacattgactattgtttgcaaactggataaaggaccaacagcatgttccggaagtactgtggtttagcccatttttaccttgatgccaaaccaaacatttactctgaaaagtcgttgcatgctgaaaaagtaaccgtgtgggcctaactcagttcaacaggactaattgggccgttttcctttgaaaacagtgatggtgaaacagaaacgataaacagttgttgatatttggatgttatgcagtagaaattcattccggcattaaagagggagaaagtggttatgcacagggtgtggtttcagcaagatggagcaacaccacgcacatctacagaagttcac
gi|5 : ggtgtttcataatatatgttacagaaacgacagtgtattacagatgatgggaatgtattttgttgtgtataatacatcaaattaacaagcaattaaacaaattttatatggcactgaaagttcgagaaaaataacgacgtcatgacgtcatgaatgacatttctgacgacatcaattcaggtgtttgtttacaaatggcgctgtccacagaaatgcacagagacattattaagtacttttatgaatgttaatatgttgctaaagttctcagaagaatgcaaaaaaatgtacccagaggaaaaaagtctaaacagaatgcaagttcatcgaatagtacggaaatctgagcaaacggggtcggttttagaccagcgtcacagtaatgccaggagaccaaggagcgctcgatctgatgagaacatcggtagtgtgagagcttctgttgcagaaacacctcacctctgcaagaaagatagtttacgatgtttctaaagcttgtgcttcaactgtatacaggattctacgatttgaactgaaacttattccatataaaatatcttttatgaaatatttgaagaaatcagacattgactattgtttgcaaactggataaaggaccaacagcatgttccggaagtactgtggtttagcccatttttaccttgatgccCTCTCTCTTGATGCATGATTGTGTAAACAAACAGAACTTCCGC-TTTTGGGGAAGTGAAAAACCAAACTATTAAGCTGAAAAGTTGTTGCATGCTGAAAA-GTAACCGTGTGGGCCGCA-----CTCAGTTCAACTGGACTAATTAGGTGGTTTTTCTTTGAAAACAGTGATTGTGAAACAGAAAC-GATAAACAGCTGTCAATATTGGGAT---GTCATGCAGAAGAAATTCATTCCGGCATTAAAAAGGAGGAAA-GTGAATATGCACAGGATGTGGTTTCAGCAAGATGGAGCAACACCACACACA--T-----CTACAGAAGTTCTAGCATTGTAAAAGAAGACATTTGGCA-TCAGATGT--C-TGTCTTTCAGAACAGATCAATTT------TGGCCACCCTATTCCCCTGACCTCAACC--CGTTGGACTTCTT-TCTGTGAGGCTA-TCT-T-AAAGACAGGGTTTATCAATGCAAAC--CAACATGTGTTGA---------A-GAATTGAAAGCATCAATCAAGAGGGAGT--TCCAAACAGTATCAGCTGAAACTTGTGCAG--CAGTAATAGAGAACTTTGGAAAACGAAT-TGATGTCGTTA---TTCGTCAAAGCGGACGTCACATGGAACACA---TCATCT-GAAAATTAAATT-TTATAATATTTCT-GACTAACACCTCA-TTTTTCAAGCAAAAT--TGACCTATTTCATA-TGTAA-TAAAAT------TTTGAAATGTCCTCTTTAAAATTGT-TTTTCTGTTTTTACATATT---GTA--T------AAAATAAT--GCAAATTATAAACCCACGAAACTGTAACATATA---TGAAACACCCTATAac
gi|6 : GCTGAAAAGTCGTTGCATGCTGAAAAAGTAACCGTAATGGCCGCA-----CTGAGTTCAACTGGACTAATTAGGCCATTTTTCTTTGAAAACACTGATGGTGAAACAGAATC-GATAAACAACTGTCGATATTTAGAT---GTCGTACAGAAGAAATTCATTCCGGCATTAAAGAGGAGGAAA-GTGAATATGCACAGGATGTGGTTTCAGCAAGATGGAGCAACACCACACACA--T-----CTACAGAAGTTCTAGCTTGGCTAAAGAAGACATTTGGCA-CCAGATTT--C-TGTCTTTCAGAACAGATCAATGT------TGGCCACTCCATTCCCCTGACCTCAACC--CGTTGGACTTCTT-TCTGTGAGGTTA-ACT-T-AAAGACAGGGTGTATCAATGCAAAC--CAACATGTGTTGA---------A-AAGTTGAAAGCATCAATCAAGAGAGAGT--TCCAAACTGTATCAGCTGAAACTTGTCCAG--CAGTAATAGAAAACT----------AAT-TGACGTCGTTA---TTCGTCAAAACGGACGTCACTTGGAACACA---TCATCT-GAAAATTAAATT-TTATGAAATTTCT-GACTAACACCTCA-TTTTTCAAGCAAAAT--TGACATATTTCAAA-TGTAA-TAAAAT------TTTGAAATGTCCTCTTTAAAATTGTATTTTCTGTTTTTACATATT---GTA--T------AAAACAAT--GCAAATTATAAACCCACGAAACTGTAACATATATTTTGAAACACCCTGTA
gi|7 : AGGGTGTTT-CAAAATATATGTTACAGTTTCATGGGTTTATTA--TTTGCATATT--TTT---ATATAATATGTAAAAACAGAAAAAAACACAATTTTAAAAAAGACA-TTTTAAAATTTTATTACATA-------TGCAATATGTCAATTTTGCTTGAAAAATGAGATGTTGGTCAGAACTTTCATAAAATTTAATTTTCAGATGATG-TGTTCCAAGTGACGTCCGTTTTGACGAATAACGACATCAATTAGTTTTCCAGAGTTCTCTATTACTGCTGCACAAGTTTCAGCTGATACTGTTTGGAACTCTCTCTTAATGCATG-T-GTTTA--TAAACAGAACTTCCGC-TTTTGGGGAAGTGAAAATCCAAACTTTTACGCTGAAAAGTCGTTGCATGCTGAAAAAGTAGCCGTAATGGCCACA-----TTGAGTTCAACTGGACTAATTAGGCCATTTTTCTTTGAAAACACTGATGGTGAAACAGAAAC-GATAAACAGTTGTCGATATTTAGAT---GTCATGCAGAAGAAATTCATTCTGGCATTA
gi|8 : -GTTAA--CAAGCAAAACTGTAGA-TACCGGAGAAGGGGAGAACCAAATGTGTTTGTCGAGACGCCATTGCACGGCGAAAAGGTGACGGTTTGG-CCGCGTAAAGCTC---TCAG--GGAATTATTGGAACAATTT-CTATGAAGATAAAAACGAAGAAACTGCAACTGA--AACAG-------TA-------------------AAAATATTTTTACCAGCATAAAAAAAGACGAGACATTGATATTAATAT-ATATGGTATCAGCAAGGTGGCGCTGTTCC-CACACAGCC-----CTGCA-AATTCCCGACA-GGCTGGAGGAGAAAT---GCAGACA-ATTTGAC-T-TCGCTCAAAACG------TTTACAGAATGGCCGCCGAACTCGCCGGATCTAAGCC--CACCCGGCTTTTT-CTTGTGGGA--ACTCT-TGAAGGGCATGATTTA------CAAAC--CAATA
gi|9 : cattacagatgtgatttgattccaagatgaagcccatttttatttgaatgcaacgGGTTT--C-TGTCTTTCAAGGCGGACCAATTT------TGGCGACCCCACTCCCCAAATCTCAACC--CGCTGGACTTCTT-CCTGTGGGGTTA-TCT-T-AAGG-CAGTGTC-AT-AGTGTAAAC--CAACATGTGTTGATCACCCGGAA-TAGTTGAAAACATCAATCAA-ATAAAAA--TCCAAACAGTATCCTCTGAAACCTGTGTAG--AAATGGTAGAGACCTTTGTGAAAC-ACTGTGACGCCGTTA---TTCGTCAGAAAGGACGTCACTTAGAACATA---TTATTTTGAAAATGACATT-TGAT-AAATATATAGATTGTGATCACA---------GC----T--TGACATGTTACATA-TGGAA-TGAAAC------TTTGAACTGTTTTCTTTCAAATGGTGTTTTCAGTTTTTACATATT---GCA--TAGATCTAAATAAATAAGCAAATTACAAccaaaggtaacggaagaactcaagaaagc
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|12 ): CAGGGTGGTTCAAATGTACAGTTATGACTGCATATTACAGATTAATGTGTTAGTATTGTTGTGTATACTATATTGAAAAAACAAGCATAGAACCAAATTATATATGGCACTAAAAGTTCGGGAAAAATTATAATGTCATGATGTCATCTATGATGTCATCTGATCAGGTGTTTTCACAGTGGGGCTGTTCACAAAATTGTTAGGCTCTATTATGAATGTTATTTTCTTGTTACTGTTGTAAGAAAAATGTAAAAACTATACCTAGAGGAAGAGAGATTCAGCAGAATGCAAGTT
Unaligned ( gi|17 ): TTTAAACCAACGACATTGTAATGGCGGCAGACCAAGTAGCATCATGTCTGACGAAAACATAGCCAGTGTGAAGTCTACTATTGCAGAACCACCACGACAGCCTGCAGAAAGGTCACGAGGTTTCATACACAAGTACACCGTTGCAGTATTTTTCGGTTTGACCGAAAACTTACTATATCTACATATGACATTATTGCTTATGTAGCAATTGAAGAAAGAAGACATTGACT
Unaligned ( gi|25 ): AACAGGCGGTTTCATAATATATGTTAAAATAAATACTGTGTAGTACAGATTAATGAGAAAGTA
Alignments
lowQualScore : 1111111 1111111 111 3 11111 11111111 111111 111111111 111111 222222
lowQualScore : 4 66 5 888 6666666 888 5 5 66 888 66 5 5 1 8888888 77 000 5 3 0 99 0 0 0 6 3 99 6 0 55 0 22222 5 0 0 888 5 55555555 1 66 5 66 5 444444 4 66 0 1 4 0 55 4 4 4 1 88 0 55 777777777 4 66 66 1 0 1 0 5 888 5 5 6 5 5 5 5 666666 0 3 666666 66 66
lowQualScore : . .. . ... ....... ... . . .. ... .. . . . ....... .. ... . . . .. . . . . . .. . . .. . ..... . . . ... . ........ . .. . .. . ...... . .. . . . . .. . . . . .. . .. ......... . .. .. . . . . . ... . . . . . . . ...... . . ...... .. ..
lowQualScore : 0 99 0 888 2222222 888 0 0 99 888 99 0 7 9 6666666 99 000 7 2 2 00 8 8 2 7 5 22 7 6 00 2 55555 0 2 2 888 7 33333333 7 77 6 99 0 444444 4 11 1 0 4 9 33 4 4 4 0 66 7 55 888888888 4 11 11 9 1 1 2 0 888 0 0 6 7 7 7 7 444444 2 0 666666 11 11
consensus : TACAGGGTGTTT-CAAAATATATGTTACAGTTTCG--TGGGT-TTA---TAATTTG-------CATTTTTTT---ATAT-AAT-ATGTAA--AAACAGAAAA---CA--CAATT-TTAAAGAGGACA-TTTCAAAATTTTATTACATA-------TGCAATATGTCA--ATTTTGCTTGAAAAATGAGATGTTGGTCAGAAATTTCATAAAATTTAATTTTCAGATGA---TG-TGTTCCAAGTGACGTCCGTTTTGACGAATAACGACGTCAATTAGTTTTCCAGAGTTCTCTATTACTGCTGCACAAGTTTCAGCTGATACTGTTTGGAACTCTCTCTTGATGCATG-T-GTTTA--CAAACAGAACTTCCGC-TTTTGGGGAAGTGAAAAACCAAACATTTACGCTGAAAAGTCGTTGCATGCTGAAAAAGTAACCGTGNGGGCCGCA-----CTCAGTTCAACTGGACTAATTAGGCCGTTTTTCTTTGAAAACAGTGATGGTGAAACAGAAAC-GATAAACAGCTGTCGATATTTGGAT---GTCATGCAGAAGAAATTCATTCCGGCATTAAAGAGGAGGAAA-GTGGATATGCACAGGATGTGGTTTCAGCAAGATGGAGCAACACCACACACA--T-----CTACAGAAGTTCTAGCATGGCTAAAGAAGACATTTGGCA-NCAGATTT--C-TGTCTTTCAGAACGGATCAATTT------TGGCCACCCCATTCCCCCGACCTCAACC--CGTTGGACTTCTT-TCTGTGGGGTTA-TCT-T-AAAGACAGGGTNTATCAATGCAAAC--CAACATGTGTTGA---------A-GAGTTGAAAGCATCAATCAAGAGAGAGT--TCCAAACAGTATCAGCTGAAACTTGTGCAG--CAGTAATAGAGAACTTTGGAAAACGAAT-TGACGTCGTTA---TTCGTCAAAACGGACGTCACTTGGAACACATCATCT-GAAAATTAAATT-TTATGAAATTTCT-GACTAACATCTCA-TTTTTCAAGCAAAATTGACATATTTCATA-TGTAA-TAAAAT------TTTGAAATGTCCTCTTTAAAATTGTGTTTTCTGTTTTTACATATTGTATA-----AAAAAAAT--GCAAA--TTATAAACCCACGAAACTGTAACATATATTTTGAAACACCCTGTA
Reference ( family-2302 ) : TACAGGGTGTTT-CAAAATATATGTTACAGTTTCG--TGGGT-TTA---TAATTTG-------CATTTTTTT---ATAT-AAT-ATGTAA--AAACAGAAAA---CA--CAATT-TTAAAGAGGACA-TTTCAAAATTTTATTACATA-------TGCAATATGTCA--ATTTTGCTTGAAAAATGAGATGTTGGTCAGAAATTTCATAAAATTTAATTTTCAGATGA---TG-TGTTCCAAGTGACGTCCGTTTTGACGAATAACGACGTCAATTAGTTTTCCAGAGTTCTCTATTACTGCTGCACAAGTTTCAGCTGATACTGTTTGGAACTCTCTCTTGATGCATGAT-GTTTA--CAAACAGAACTTCCGC-TTTTGGGGAAGTGAAAAACCAAACATTTACGCTGAAAAGTCGTTGCATGCTGAAAAAGTAACCGTGNGGGCCGCA-----CTCAGTTCAACTGGACTAATTAGGCCGTTTTTCTTTGAAAACAGTGATGGTGAAACAGAAAC-GATAAACAGCTGTCGATATTTGGAT---GTCATGCAGAAGAAATTCATTCCGGCATTAAAGAGGAGGAAA-GTGGATATGCACAGGATGTGGTTTCAGCAAGATGGAGCAACACCACACACA--T-----CTACAGAAGTTCTAGCATGGCTAAAGAAGACATTTGGCA-NCAGATTT--C-TGTCTTTCAGAACGGATCAATTT------TGGCCACCCCATTCCCCCGACCTCAACC--CGTTGGACTTCTT-TCTGTGGGGTTA-TCT-T-AAAGACAGGGTNTATCAATGCAAAC--CAACATGTGTTGA---------A-GAGTTGAAAGCATCAATCAAGAGAGAGT--TCCAAACAGTATCAGCTGAAACTTGTGCAG--CAGTAATAGAGAACTTTGGAAAACGAAT-TGACGTCGTTA---TTCGTCAAAACGGACGTCACTTGGAACACATCATCT-GAAAATTAAATT-TTATGAAATTTCT-GACTAACATCTCA-TTTTTCAAGCAAAATTGACATATTTCATA-TGTAA-TAAAAT------TTTGAAATGTCCTCTTTAAAATTGTGTTTTCTGTTTTTACATATTGTATA-----AAAAAAAT--GCAAA--TTATAAACCCACGAAACTGTAACATATATTTTGAAACACCCTGTA
gi|1 : GAAGCCTATCTTGATGAATG-T-GTT-----AAACAGAACTTACGCCTTTTGGAGAAGTGAAAAACCAAACATTTACGCTGAAAAGTCATTGCATGCTGAAACAGTAACCG---------CA-----CTCAGTTCTTCTTTATTAATTGGGTCGTTTTTCTTTGAAAACAGTGATGGTGATACAGAAAC-GATAAACAGCTGTCGACATTTGGATCACATCACGAAGAAGAAATGCATTCCGGAATTAAACAGTAGGAAA-GTTGATATGAACAGGATGTGGGTTCATGAAGATGGAGCAATACCACAAATA--TATAGACTACAGAAGTTCTAGCTTCGGTAAAGAAGACATTTGGCA-TCATATTT--C-TGTGTTTCAGAACGGATCAATTG------CGGCCACCACAATCCCCTGACCTCAACC--CGTTGTACTTCTT-TCTGTGGGG------T-T-AAAGACAGGGTATATAACTGCAAAC--CAACATGTGTGGA---------A-GAGTTAAAAGCATAAA--AAAGGAGAATTCTCCAAA
gi|10 : acagggtgcttgtaatatatgttacagtaacgactgtgtattacagataagtaggaaagtaatttgctttgtataatgctttgtataaaacatcaaattaacaaacaattaaccaaattttatatggcactgaaagttcggggaaaattacgacgtcaagatgttatcaaatcaggtgtttgattacaaatggcactgtccacagaaatgcacagcgacatttttaagctcttttatgaaagtacatctgttgttaacgttgtaagaagaatgcagaaaatgtacccagaggaagaaagacgcaacagaattcaagttcatcgaaaagaacgacattctgaacaaacgggatcggttttaaaccagcgccacagtaatgccgggagaccaaggagcgcttggtctgatgagaacatggctagtgtgagagcttctgttgtagaaacacctcagcagtctgtaagacagatactttacgatgtttctaacgcaagtgcatcaacagtatacaggattctacgaattgacctgaaatcagacattgactaaaggttatcgtttgcaaacttggttaaggaccattacatgtttcgatgtattatggtttagcgacTTCTGTTGTTAC-TGTTGTA-------AGAAAAAT--GCAAAAGCTAT--ACCCA
gi|11 : tacattgcgtttcaaatatatatacactaacgactgcgtaacacagattactgtgagagtattttgctgtgtatactgtatcaaaataacaggcacataagcaaatttattatagcaccaatagtttgggatagttatggcgtaatctgtgacgtcatctaaacaatattttgttttgacaatagcgctgtccacagaaaggcacatatacattattaggctaGA---------G-GAGTTGAAAGTATCAATCAAGAGAGAAT--TCCTAACAGTATCAGCTGAAATTTGTGCTG--CAGCGGCAAAGAACT------------------GTCGTTAAAATTCATCAGAATGGGCATCAATTTGAACATATCATAT-GAAAATGATATT-TTGT-AAGGTACA-GACTGATATCATG-TTTTTCAAACAATCTTGACATGTTGTATACTATAACTGGAATAACCTTTTTGGAATGTCCTCTTTTAAATGGTGTTTA-------TATATAGTGTATA-----AATTAA----GCAAA--TTATAACCCCCGGAAACTGTAACATATATTTTGAGACACCCTGTgagaaagaaagatttagcagaatacaatttcatcgaaatgacattttataaaggcatggactaagatcag
gi|13 : CAGGATTTTTTCAAAATATATGTTACAGTTTTG--TGGGT-TTA---TAATTTG-------CATTTTTTT---ATAT-AAT-ATGTAA--ATACAGAAAA---CA--CAATT-TTAGAGAAGAAAATTTTTAAATTTTATTACATA-------TGCAATATGTCA--ATTTTGCTTGAAAAATGAGATGTTGGCCAGAAATTTCATAAAATTTAATTTTCAGATGA---TT-TGTTCCAAGTGACGTCCGTTTTGACGAATAACGAGTTCAGTTAGTTTTTCAGAGTTCTCTATTACTGCTGCACAAGTTTCAGCTGATACTGTT
gi|14 : TACAGGGTGTTT-CAAAATATATGTTACAGTTTCA--TGGCT-TTA---TAATTTG-------CATTTTTTTTTAATAT-AAT-ATGTAA--AAACAGAAAA---CA--CAATT-TTAAAGAGGACA-TTTCAAAATTGTATTACATAATAATTATGGTATATGTCA--ATTTTGCTTGAAAAATGAGATGTTGGTCAGAAATT--ATAAAATTTAATTTTCAGATGA---TG-TGTTCCAAGTGACGTCCGTT--------------------------TTCCAGAGTTCTCTATTACTGCTGCACAAGTTTCAGCTGATACTGTTTGGAAC
gi|15 : GAAACTTGTGCAG--CAGTAATAGAGAACTTTGGAAAACGAAT-TGACGTCGTTA---TTCGTCAAAACGGACGTCACTTGGAACACATCATCT-GAAAATTAATTT-TTATGAAATTTCT-GACTAACATCTCA-TTTTCCAAGCAAAATTGACATATTTCATA-TGTAA-TAAAAT------TTTGAAATGTCCTCTTTAAAATTGTGTTTTCTGTTGTTACATATTGTAT-------AAAAAAT--GCAAA--TTATAAACCCACGAAACTGTTACATATATTTTGAAACACCCTGTA
gi|16 : TAGCTTGAGAAGGCATTTGGTG-ACA-ATGT--CATTTCTTTCAAGACAGAGAAAGAG------TGGTTTCTCCATTCACACGATATTAACCATC-TTGG--TTATTATTTGAGAGAT-A-CTTAT-AAAGGCAGAATATATAAA--CAAACACCAACTCCCG--GA---------ATGAATTGAAAGTGGCTATTGGAAGAAAAA--TGAGATTAGTATCAACTGAAAC--ATGCAGATCAGTAATAAAAAACTTTAAGAAACG
gi|18 : TACAAGGTGTTT-CAAACTATTTGTTGCAGTAACGACAGCGTATTACAGTAATTTGTAAGTATTATTTTTGT---GTAT-ACTAATGGAATTAACTAGAACA---GAGCCAATTATTAtttagagtggctatcacacagaagggac
gi|19 : CAGGGCGTTT-CAAAATATATGTTGGAGTTTCA--TGGGT-TTA---TAATTTG-------C--TTAATT---ACGGGAAA-ATGTAA--AAACAGAAAT---CA--CCATT-TGAAATAGTACA-TTTCTAAACGTTATTCCATA-------TACAATATATCAAGATTGTTTTTAAAAAAGCTGATCTTAGTCCATGCCTTTATAAAATGTCATTTC--GATGAAATTG-TATTtggtattaagaagaaaatgacgtaatctaagtggatgttcggttttgcaatgacactgttcacagaaagacatgggaaaactattaagcactattatgtatg
gi|2 : TACAGGGTGTTT-CAAAATATATGTTACAGTTTCA--TGGGT-TTA---TAATTTG-------CATTTTTTT---ATAT-AAT-ATGTAA--AAAAAGAAAA---CA--CAATT-TTAAAGAGGACA-TTTCAAAATTTTATTACATA-------TGCAATATGTCA--ATTTTGCTTGAAAAATGAGATGTTGGTCAGAAATTTCATAAAATTTAATTTTCAGATGA---TG-TGTTCCAAGTGACGTCCGTTTTGACGAATAACAACGTCAATTAGTTTCCCAGAGTTCTCTATTACTGTTGCACAAGTTTCAGTTGATACTGTTTGGAACTC-ATCTTGATGCATG-T-GTTTA--CAAACAGAACTTCCGC-TTTTGGGGAATTGAAAAACCAAACATTTACGCTGAAAAGTCGTTGCGTGCTGAAAAAGTAACCGCAAGGGCCACA-----CTCAGTTCAACTGGACTAATTAGGCCGTTTTTCTTTGAAAACAGTGATGATGAAACAGAAAC-GATAAACAGCTGTCGATATTTGGAT---GTCATGCAGAAGAAATTCATTCCGGCATTAAAGAGGAGGAAA-GTGAATATGCACAGGATGTGGTTTCAGCAAGATGGAGCAACACCACACACA--T-----CTACAGAAGTTCTAGCATGGCTAAAGAAGACATTTGGCA-TCAGATTT--C-TGTCTTTCAGAACAGATCAATTT------TGGCCACCCCATTCCCCTGACCTCAACC--CGTTGGACTTCTT-AATGTGAGGTTA-TCT-T-AAAGACAGGGTGTATCAATGCAAAC--CAACATGTGTTGA---------A-GAGTTGAAAGCATCAATCAAGAGAGAGT--TCCAAACAGTATCAGCTGAAACTTGTGCAG--CAGTAATAAAGAACTTTGGAAAACGAAT-TGACGTAGTTA---TTCGTCAAAACGGACGTCACTTGGAACACATCATCT-GAAAATTAAATTGTTATGAAATTTCT-GACTAACATCTCA-TTTTTCAAGCAAAATAGACATATTTCATA-TGTAA-TAAAAT------TTTGAAATGTCCTCTTTAAAATTGTGTTTTCTGTTTTTACATATTGTATA-----AAAAAAAT--GCAAA--TTATAAACCTACGAAACTGTAACATATATTTTGAAACACCCTGTA
gi|20 : TACAGGGTCTCT-CAAAGTATATGTTACAGTTTCG--TGGGT-TTA---TAATTTG-------CACTTTTT----ATAC-AAT-ATGTAA--AAACAGAAAA---CA--CAATT-TTAAAATGGACA-TTTCCAATTTTTTTTACATA-------TGCAAT-----------TTGCTTGAAAAATGAGATGTTGGTCAAAAATTTCATAAAATTTAATTTCCAGATAA---TG-TGTTCCAAGTGA
gi|21 : ACAGGGTGTTT-CATAGTATATGTTACAGTac
gi|22 : ATACAAAC--GAACATGTATGGA---------A-GAGTTAAAA---TCA-TCAAGAGGGAAT--TCCCAACAGTATCAGCTGAAATTTTTGCAG--CAATGCTAGAGATC-TTGGAAAAAGATG-TGATGTCGTTA---TTCATCAAAACGGACGTCATTTTGAACAC-TCATCT-GAAAATTAAAGT-TTAaacaactgcgtattacagataaatggacagtattttgctgcgtattttacctcaaataaacaagcaattaaccaaattgtatatggcactgaaaggtttttgaaaatatttctttgagtgtcctgtgtcctgactgagtgttatcacgtattttc
gi|23 : TCCCCCCAACCATAACT--CTCTGGTCTTCTT-TTTGTGGGGTTA-TTT-G-AAGGACTAAGTTTA------CAAAC--CAAC
gi|24 : ggcagtttattatcttcaaaacccagaatgtctagcctaacTTCAAATGGTGTTTTCTGCTTTTCTATATTGCATA-----AATTAAA----CAAA--TTATTCACCCATGAAACTGTAACATACATTTTGAAACACCCTtcccaaacaattaactgaagaa
gi|3 : aTATAGGTTGTTT-CAAAATATATGTTACAGTTTCG--TGGGT-TTA---TAATTAG-------CATTTTTTT---ATAT-AAT-ACGTAA--AAACAGAAAA---CA--CAATT-TTAAAGAGGACA-TTTAAAAAATTTATTACAAA-------TGCAATATGTCA--ATTTTACTTGAAAAATGAGATATTGGTCAGAAATTTCATAAAATTTGA-TTTCAGCTGA---TACTGTT
gi|3 : gTTTCAGCTGATACTGTTTGGAACTCTCTCTTGATGCATG-T-GTTTA--CAAACAGAACTTCCGC-TTTTGGGGAAGTGAAAACCAAAACATTTACGCTGAAAAGTCGTTGCATGCTGAAAAAGTAACCGTGTGGGCCGCA-----CTCAGTTCAACTGGACTAATTAGGCCGTTTTTCTTTGAAAACAGTGATGGTGAAACCGAAAC-GATAAACAGCTGTCGATATTTTGAT---GTGACGCAGAAGAAATTCATTCCGGCATTAAAGAAGAGGAAA-GTGAATATGCACAGGATGTGGTTTCAGCAAGACATAGCAACACCACACACA--T-----CTACAGAAGTTCTGGCATGGCTAAAGAATACATATGGCA-CCAGATTT--C-TGTCTTTCAGAACAGATCAAATT------TGGCCACCCCATTCATCTGACCTCAACC--CGTTAGACTTCTT-TATGTGAGGTTA-TCT-T-AAAGACAGGGTGTATCAATGCACAC--CAACATGTGTTGA---------A-GGGTTGAAAGCATCAATCAAGAGAGAGT--TCCAAACAGTATCAGCTGAAACTTGTGCAG--CAGTAATAGAGAACTTTGGAAAACGAAT-TGACGTCGTTA---TTCGTCAAAACGGACGTCACTTGGAACACATCATCT-GAAAATTAAATT-TTATGAAATTTCT-AACTAACATCTCATTTTTTCAAGCAAAATTGACATATTTCATA-TGTAA-TAAAAT------TTTGAAATGTCCTCTTTAAA---GTGTTTTCTGTTTTAACATATTGTAT------AAAAAAAT--GCAAA--TTATAAACCAACAAAACTGTAACATATATTTTGAAACACCCTGTAtggaactctctcttgatgcatgtgtttacaaacagaacttccgcttttggggaagtgaaaaccaaaacatttacgctgaaaagtcgttgcatgctgaaaaagtaaccgtgtgggccgcactcagttcaactggactaattaggccgtttttctttgaaaacagtgatggtgaaaccgaaacgataaacagctgtcgatattttgatgtgacgcagaagaaattcattccggcattaaagaagaggaaagtgaatatgcacaggatgtggtttcagcaagacatagcaacaccacacacatctacagaagttctggcatggctaaagaatacatatggcaccagatttctgtctttcagaacagatcaaatttggccaccccattcatctgacctcaacccgttagacttctttatgtgaggttatcttaaagacagggtgtatcaatgcacaccaacatgtgttgaagggttgaaagcatcaatcaagagagagttccaaacagtatcagctgaaacttgtgcagcagtaatagagaactttggaaaacgaattgacgtcgttattcgtcaaaacggacgtcacttggaacacatcatctgaaaattaaattttatgaaatttctaactaacatctcattttttcaagcaaaattgacatatttcatatgtaataaaattttgaaatgtcctctttaaagtgttttctgttttaacatattgtataaaaaaatgcaaattataaaccaacaaaactgtaacatatattttgaaacaccctgta
gi|4 : gtataggttgtttcaaaatatatgttacagtttcgtgggtttataattagcatttttttatataatacgtaaaaacagaaaacacaattttaaagaggacatttaaaaaatttattacaaatgcaatatgtcaattttacttgaaaaatgagatattggtcagaaatttcataaaatttgaGGTGTTT-CATAATATATGTTACAG
gi|4 : AAACCAAACATTTACTCTGAAAAGTCGTTGCATGCTGAAAAAGTAACCGTGTGGGCCTAA-----CTCAGTTCAACAGGACTAATTGGGCCGTTTTCCTTTGAAAACAGTGATGGTGAAACAGAAAC-GATAAACAGTTGTTGATATTTGGAT---GTTATGCAGTAGAAATTCATTCCGGCATTAAAGAGGGAGAAA-GTGGTTATGCACAGGGTGTGGTTTCAGCAAGATGGAGCAACACCACGCACA--T-----CTACAGAAGTTCaaacgacagtgtattacagatgatgggaatgtattttgttgtgtataatacatcaaattaacaagcaattaaacaaattttatatggcactgaaagttcgagaaaaataacgacgtcatgacgtcatgaatgacatttctgacgacatcaattcaggtgtttgtttacaaatggcgctgtccacagaaatgcacagagacattattaagtacttttatgaatgttaatatgttgctaaagttctcagaagaatgcaaaaaaatgtacccagaggaaaaaagtctaaacagaatgcaagttcatcgaatagtacggaaatctgagcaaacggggtcggttttagaccagcgtcacagtaatgccaggagaccaaggagcgctcgatctgatgagaacatcggtagtgtgagagcttctgttgcagaaacacctcacctctgcaagaaagatagtttacgatgtttctaaagcttgtgcttcaactgtatacaggattctacgatttgaactgaaacttattccatataaaatatcttttatgaaatatttgaagaaatcagacattgactattgtttgcaaactggataaaggaccaacagcatgttccggaagtactgtggtttagcccatttttaccttgatgccaaaccaaacatttactctgaaaagtcgttgcatgctgaaaaagtaaccgtgtgggcctaactcagttcaacaggactaattgggccgttttcctttgaaaacagtgatggtgaaacagaaacgataaacagttgttgatatttggatgttatgcagtagaaattcattccggcattaaagagggagaaagtggttatgcacagggtgtggtttcagcaagatggagcaacaccacgcacatctacagaagttcac
gi|5 : ggtgtttcataatatatgttacagaaacgacagtgtattacagatgatgggaatgtattttgttgtgtataatacatcaaattaacaagcaattaaacaaattttatatggcactgaaagttcgagaaaaataacgacgtcatgacgtcatgaatgacatttctgacgacatcaattcaggtgtttgtttacaaatggcgctgtccacagaaatgcacagagacattattaagtacttttatgaatgttaatatgttgctaaagttctcagaagaatgcaaaaaaatgtacccagaggaaaaaagtctaaacagaatgcaagttcatcgaatagtacggaaatctgagcaaacggggtcggttttagaccagcgtcacagtaatgccaggagaccaaggagcgctcgatctgatgagaacatcggtagtgtgagagcttctgttgcagaaacacctcacctctgcaagaaagatagtttacgatgtttctaaagcttgtgcttcaactgtatacaggattctacgatttgaactgaaacttattccatataaaatatcttttatgaaatatttgaagaaatcagacattgactattgtttgcaaactggataaaggaccaacagcatgttccggaagtactgtggtttagcccatttttaccttgatgccCTCTCTCTTGATGCATGATTGTGTAAACAAACAGAACTTCCGC-TTTTGGGGAAGTGAAAAACCAAACTATTAAGCTGAAAAGTTGTTGCATGCTGAAAA-GTAACCGTGTGGGCCGCA-----CTCAGTTCAACTGGACTAATTAGGTGGTTTTTCTTTGAAAACAGTGATTGTGAAACAGAAAC-GATAAACAGCTGTCAATATTGGGAT---GTCATGCAGAAGAAATTCATTCCGGCATTAAAAAGGAGGAAA-GTGAATATGCACAGGATGTGGTTTCAGCAAGATGGAGCAACACCACACACA--T-----CTACAGAAGTTCTAGCATTGTAAAAGAAGACATTTGGCA-TCAGATGT--C-TGTCTTTCAGAACAGATCAATTT------TGGCCACCCTATTCCCCTGACCTCAACC--CGTTGGACTTCTT-TCTGTGAGGCTA-TCT-T-AAAGACAGGGTTTATCAATGCAAAC--CAACATGTGTTGA---------A-GAATTGAAAGCATCAATCAAGAGGGAGT--TCCAAACAGTATCAGCTGAAACTTGTGCAG--CAGTAATAGAGAACTTTGGAAAACGAAT-TGATGTCGTTA---TTCGTCAAAGCGGACGTCACATGGAACACATCATCT-GAAAATTAAATT-TTATAATATTTCT-GACTAACACCTCA-TTTTTCAAGCAAAATTGACCTATTTCATA-TGTAA-TAAAAT------TTTGAAATGTCCTCTTTAAAATTGT-TTTTCTGTTTTTACATATTGTAT------AAAATAAT--GCAAA--TTATAAACCCACGAAACTGTAACATATA---TGAAACACCCTATAac
gi|6 : GCTGAAAAGTCGTTGCATGCTGAAAAAGTAACCGTAATGGCCGCA-----CTGAGTTCAACTGGACTAATTAGGCCATTTTTCTTTGAAAACACTGATGGTGAAACAGAATC-GATAAACAACTGTCGATATTTAGAT---GTCGTACAGAAGAAATTCATTCCGGCATTAAAGAGGAGGAAA-GTGAATATGCACAGGATGTGGTTTCAGCAAGATGGAGCAACACCACACACA--T-----CTACAGAAGTTCTAGCTTGGCTAAAGAAGACATTTGGCA-CCAGATTT--C-TGTCTTTCAGAACAGATCAATGT------TGGCCACTCCATTCCCCTGACCTCAACC--CGTTGGACTTCTT-TCTGTGAGGTTA-ACT-T-AAAGACAGGGTGTATCAATGCAAAC--CAACATGTGTTGA---------A-AAGTTGAAAGCATCAATCAAGAGAGAGT--TCCAAACTGTATCAGCTGAAACTTGTCCAG--CAGTAATAGAAAACT----------AAT-TGACGTCGTTA---TTCGTCAAAACGGACGTCACTTGGAACACATCATCT-GAAAATTAAATT-TTATGAAATTTCT-GACTAACACCTCA-TTTTTCAAGCAAAATTGACATATTTCAAA-TGTAA-TAAAAT------TTTGAAATGTCCTCTTTAAAATTGTATTTTCTGTTTTTACATATTGTAT------AAAACAAT--GCAAA--TTATAAACCCACGAAACTGTAACATATATTTTGAAACACCCTGTA
gi|7 : AGGGTGTTT-CAAAATATATGTTACAGTTTCA--TGGGT-TTA---TTATTTG-------CATATTTTT---ATAT-AAT-ATGTAA--AAACAGAAAAAAACA--CAATT-TTAAAAAAGACA-TTTTAAAATTTTATTACATA-------TGCAATATGTCA--ATTTTGCTTGAAAAATGAGATGTTGGTCAGAACTTTCATAAAATTTAATTTTCAGATGA---TG-TGTTCCAAGTGACGTCCGTTTTGACGAATAACGACATCAATTAGTTTTCCAGAGTTCTCTATTACTGCTGCACAAGTTTCAGCTGATACTGTTTGGAACTCTCTCTTAATGCATG-T-GTTTA--TAAACAGAACTTCCGC-TTTTGGGGAAGTGAAAATCCAAACTTTTACGCTGAAAAGTCGTTGCATGCTGAAAAAGTAGCCGTAATGGCCACA-----TTGAGTTCAACTGGACTAATTAGGCCATTTTTCTTTGAAAACACTGATGGTGAAACAGAAAC-GATAAACAGTTGTCGATATTTAGAT---GTCATGCAGAAGAAATTCATTCTGGCATTA
gi|8 : -GTTAA--CAAGCAAAACTGTAGA-TACCGGAGAAGGGGAGAACCAAATGTGTTTGTCGAGACGCCATTGCACGGCGAAAAGGTGACGGTTTGG-CCGCGTAAAGCTC---TCAG--GGAATTATTGGAACAATTT-CTATGAAGATAAAAACGAAGAAACTGCAACTGA--AACAG-------TA-------------------AAAATATTTTTACCAGCATAAAAAAAGACGAGACATTGATATTAATAT-ATATGGTATCAGCAAGGTGGCGCTGTTCC-CACACAGCC-----CTGCA-AATTCCCGACA-GGCTGGAGGAGAAAT---GCAGACA-ATTTGAC-T-TCGCTCAAAACG------TTTACAGAATGGCCGCCGAACTCGCCGGATCTAAGCC--CACCCGGCTTTTT-CTTGTGGGA--ACTCT-TGAAGGGCATGATTTA------CAAAC--CAATA
gi|9 : cattacagatgtgatttgattccaagatgaagcccatttttatttgaatgcaacgGGTTT--C-TGTCTTTCAAGGCGGACCAATTT------TGGCGACCCCACTCCCCAAATCTCAACC--CGCTGGACTTCTT-CCTGTGGGGTTA-TCT-T-AAGG-CAGTGTC-AT-AGTGTAAAC--CAACATGTGTTGATCACCCGGAA-TAGTTGAAAACATCAATCAA-ATAAAAA--TCCAAACAGTATCCTCTGAAACCTGTGTAG--AAATGGTAGAGACCTTTGTGAAAC-ACTGTGACGCCGTTA---TTCGTCAGAAAGGACGTCACTTAGAACATATTATTTTGAAAATGACATT-TGAT-AAATATATAGATTGTGATCACA---------GC----TTGACATGTTACATA-TGGAA-TGAAAC------TTTGAACTGTTTTCTTTCAAATGGTGTTTTCAGTTTTTACATATTGCATAGATCTAAATAAATAAGCAAA--TTACAAccaaaggtaacggaagaactcaagaaagc
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|12 ): CAGGGTGGTTCAAATGTACAGTTATGACTGCATATTACAGATTAATGTGTTAGTATTGTTGTGTATACTATATTGAAAAAACAAGCATAGAACCAAATTATATATGGCACTAAAAGTTCGGGAAAAATTATAATGTCATGATGTCATCTATGATGTCATCTGATCAGGTGTTTTCACAGTGGGGCTGTTCACAAAATTGTTAGGCTCTATTATGAATGTTATTTTCTTGTTACTGTTGTAAGAAAAATGTAAAAACTATACCTAGAGGAAGAGAGATTCAGCAGAATGCAAGTT
Unaligned ( gi|17 ): TTTAAACCAACGACATTGTAATGGCGGCAGACCAAGTAGCATCATGTCTGACGAAAACATAGCCAGTGTGAAGTCTACTATTGCAGAACCACCACGACAGCCTGCAGAAAGGTCACGAGGTTTCATACACAAGTACACCGTTGCAGTATTTTTCGGTTTGACCGAAAACTTACTATATCTACATATGACATTATTGCTTATGTAGCAATTGAAGAAAGAAGACATTGACT
Unaligned ( gi|25 ): AACAGGCGGTTTCATAATATATGTTAAAATAAATACTGTGTAGTACAGATTAATGAGAAAGTA
Alignments
lowQualScore : 1111111 1111111 111 11111 11111111 111111 111111111 111111 222222
lowQualScore : 4 66 5 888 6666666 888 5 5 66 888 66 5 5 1 8888888 77 000 5 3 0 99 0 0 6 6 99 3 99 6 0 55 0 22222 5 0 0 888 5 55555555 1 66 5 66 5 444444 4 66 0 1 4 0 55 4 4 4 1 88 0 55 777777777 4 66 66 1 0 1 0 5 888 5 5 6 5 5 5 5 666666 0 3 666666 66 66
lowQualScore : . .. . ... ....... ... . . .. ... .. . . . ....... .. ... . . . .. . . . . .. . .. . . .. . ..... . . . ... . ........ . .. . .. . ...... . .. . . . . .. . . . . .. . .. ......... . .. .. . . . . . ... . . . . . . . ...... . . ...... .. ..
lowQualScore : 0 99 0 888 2222222 888 0 0 99 888 99 0 7 9 6666666 99 000 7 2 2 00 8 8 7 7 22 5 22 7 6 00 2 55555 0 2 2 888 7 33333333 7 77 6 99 0 444444 4 11 1 0 4 9 33 4 4 4 0 66 7 55 888888888 4 11 11 9 1 1 2 0 888 0 0 6 7 7 7 7 444444 2 0 666666 11 11
consensus : TACAGGGTGTTT-CAAAATATATGTTACAGTTTCG--TGGGT-TTA---TAATTTG-------CATTTTTTT---ATAT-AAT-ATGTAA--AAACAGAAAA---CA--CAATT-TTAAAGAGGACA-TTTCAAAATTTTATTACATA-------TGCAATATGTCA--ATTTTGCTTGAAAAATGAGATGTTGGTCAGAAATTTCATAAAATTTAATTTTCAGATGA---TG-TGTTCCAAGTGACGTCCGTTTTGACGAATAACGACGTCAATTAGTTTTCCAGAGTTCTCTATTACTGCTGCACAAGTTTCAGCTGATACTGTTTGGAACTCTCTCTTGA-TGCA-TG--TGTTTA--CAAACAGAACTTCCGC-TTTTGGGGAAGTGAAAAACCAAACATTTACGCTGAAAAGTCGTTGCATGCTGAAAAAGTAACCGTGNGGGCCGCA-----CTCAGTTCAACTGGACTAATTAGGCCGTTTTTCTTTGAAAACAGTGATGGTGAAACAGAAAC-GATAAACAGCTGTCGATATTTGGAT---GTCATGCAGAAGAAATTCATTCCGGCATTAAAGAGGAGGAAA-GTGGATATGCACAGGATGTGGTTTCAGCAAGATGGAGCAACACCACACACA--T-----CTACAGAAGTTCTAGCATGGCTAAAGAAGACATTTGGCA-NCAGATTT--C-TGTCTTTCAGAACGGATCAATTT------TGGCCACCCCATTCCCCCGACCTCAACC--CGTTGGACTTCTT-TCTGTGGGGTTA-TCT-T-AAAGACAGGGTNTATCAATGCAAAC--CAACATGTGTTGA---------A-GAGTTGAAAGCATCAATCAAGAGAGAGT--TCCAAACAGTATCAGCTGAAACTTGTGCAG--CAGTAATAGAGAACTTTGGAAAACGAAT-TGACGTCGTTA---TTCGTCAAAACGGACGTCACTTGGAACACATCATCT-GAAAATTAAATT-TTATGAAATTTCT-GACTAACATCTCA-TTTTTCAAGCAAAATTGACATATTTCATA-TGTAA-TAAAAT------TTTGAAATGTCCTCTTTAAAATTGTGTTTTCTGTTTTTACATATTGTATA-----AAAAAAAT--GCAAA--TTATAAACCCACGAAACTGTAACATATATTTTGAAACACCCTGTA
Reference ( family-2302 ) : TACAGGGTGTTT-CAAAATATATGTTACAGTTTCG--TGGGT-TTA---TAATTTG-------CATTTTTTT---ATAT-AAT-ATGTAA--AAACAGAAAA---CA--CAATT-TTAAAGAGGACA-TTTCAAAATTTTATTACATA-------TGCAATATGTCA--ATTTTGCTTGAAAAATGAGATGTTGGTCAGAAATTTCATAAAATTTAATTTTCAGATGA---TG-TGTTCCAAGTGACGTCCGTTTTGACGAATAACGACGTCAATTAGTTTTCCAGAGTTCTCTATTACTGCTGCACAAGTTTCAGCTGATACTGTTTGGAACTCTCTCTTGA-TGCA-TG--TGTTTA--CAAACAGAACTTCCGC-TTTTGGGGAAGTGAAAAACCAAACATTTACGCTGAAAAGTCGTTGCATGCTGAAAAAGTAACCGTGNGGGCCGCA-----CTCAGTTCAACTGGACTAATTAGGCCGTTTTTCTTTGAAAACAGTGATGGTGAAACAGAAAC-GATAAACAGCTGTCGATATTTGGAT---GTCATGCAGAAGAAATTCATTCCGGCATTAAAGAGGAGGAAA-GTGGATATGCACAGGATGTGGTTTCAGCAAGATGGAGCAACACCACACACA--T-----CTACAGAAGTTCTAGCATGGCTAAAGAAGACATTTGGCA-NCAGATTT--C-TGTCTTTCAGAACGGATCAATTT------TGGCCACCCCATTCCCCCGACCTCAACC--CGTTGGACTTCTT-TCTGTGGGGTTA-TCT-T-AAAGACAGGGTNTATCAATGCAAAC--CAACATGTGTTGA---------A-GAGTTGAAAGCATCAATCAAGAGAGAGT--TCCAAACAGTATCAGCTGAAACTTGTGCAG--CAGTAATAGAGAACTTTGGAAAACGAAT-TGACGTCGTTA---TTCGTCAAAACGGACGTCACTTGGAACACATCATCT-GAAAATTAAATT-TTATGAAATTTCT-GACTAACATCTCA-TTTTTCAAGCAAAATTGACATATTTCATA-TGTAA-TAAAAT------TTTGAAATGTCCTCTTTAAAATTGTGTTTTCTGTTTTTACATATTGTATA-----AAAAAAAT--GCAAA--TTATAAACCCACGAAACTGTAACATATATTTTGAAACACCCTGTA
gi|1 : GAAGCCTATCTTGA-TGAA-TG--TGTT-----AAACAGAACTTACGCCTTTTGGAGAAGTGAAAAACCAAACATTTACGCTGAAAAGTCATTGCATGCTGAAACAGTAACCG---------CA-----CTCAGTTCTTCTTTATTAATTGGGTCGTTTTTCTTTGAAAACAGTGATGGTGATACAGAAAC-GATAAACAGCTGTCGACATTTGGATCACATCACGAAGAAGAAATGCATTCCGGAATTAAACAGTAGGAAA-GTTGATATGAACAGGATGTGGGTTCATGAAGATGGAGCAATACCACAAATA--TATAGACTACAGAAGTTCTAGCTTCGGTAAAGAAGACATTTGGCA-TCATATTT--C-TGTGTTTCAGAACGGATCAATTG------CGGCCACCACAATCCCCTGACCTCAACC--CGTTGTACTTCTT-TCTGTGGGG------T-T-AAAGACAGGGTATATAACTGCAAAC--CAACATGTGTGGA---------A-GAGTTAAAAGCATAAA--AAAGGAGAATTCTCCAAA
gi|10 : acagggtgcttgtaatatatgttacagtaacgactgtgtattacagataagtaggaaagtaatttgctttgtataatgctttgtataaaacatcaaattaacaaacaattaaccaaattttatatggcactgaaagttcggggaaaattacgacgtcaagatgttatcaaatcaggtgtttgattacaaatggcactgtccacagaaatgcacagcgacatttttaagctcttttatgaaagtacatctgttgttaacgttgtaagaagaatgcagaaaatgtacccagaggaagaaagacgcaacagaattcaagttcatcgaaaagaacgacattctgaacaaacgggatcggttttaaaccagcgccacagtaatgccgggagaccaaggagcgcttggtctgatgagaacatggctagtgtgagagcttctgttgtagaaacacctcagcagtctgtaagacagatactttacgatgtttctaacgcaagtgcatcaacagtatacaggattctacgaattgacctgaaatcagacattgactaaaggttatcgtttgcaaacttggttaaggaccattacatgtttcgatgtattatggtttagcgacTTCTGTTGTTAC-TGTTGTA-------AGAAAAAT--GCAAAAGCTAT--ACCCA
gi|11 : tacattgcgtttcaaatatatatacactaacgactgcgtaacacagattactgtgagagtattttgctgtgtatactgtatcaaaataacaggcacataagcaaatttattatagcaccaatagtttgggatagttatggcgtaatctgtgacgtcatctaaacaatattttgttttgacaatagcgctgtccacagaaaggcacatatacattattaggctaGA---------G-GAGTTGAAAGTATCAATCAAGAGAGAAT--TCCTAACAGTATCAGCTGAAATTTGTGCTG--CAGCGGCAAAGAACT------------------GTCGTTAAAATTCATCAGAATGGGCATCAATTTGAACATATCATAT-GAAAATGATATT-TTGT-AAGGTACA-GACTGATATCATG-TTTTTCAAACAATCTTGACATGTTGTATACTATAACTGGAATAACCTTTTTGGAATGTCCTCTTTTAAATGGTGTTTA-------TATATAGTGTATA-----AATTAA----GCAAA--TTATAACCCCCGGAAACTGTAACATATATTTTGAGACACCCTGTgagaaagaaagatttagcagaatacaatttcatcgaaatgacattttataaaggcatggactaagatcag
gi|13 : CAGGATTTTTTCAAAATATATGTTACAGTTTTG--TGGGT-TTA---TAATTTG-------CATTTTTTT---ATAT-AAT-ATGTAA--ATACAGAAAA---CA--CAATT-TTAGAGAAGAAAATTTTTAAATTTTATTACATA-------TGCAATATGTCA--ATTTTGCTTGAAAAATGAGATGTTGGCCAGAAATTTCATAAAATTTAATTTTCAGATGA---TT-TGTTCCAAGTGACGTCCGTTTTGACGAATAACGAGTTCAGTTAGTTTTTCAGAGTTCTCTATTACTGCTGCACAAGTTTCAGCTGATACTGTT
gi|14 : TACAGGGTGTTT-CAAAATATATGTTACAGTTTCA--TGGCT-TTA---TAATTTG-------CATTTTTTTTTAATAT-AAT-ATGTAA--AAACAGAAAA---CA--CAATT-TTAAAGAGGACA-TTTCAAAATTGTATTACATAATAATTATGGTATATGTCA--ATTTTGCTTGAAAAATGAGATGTTGGTCAGAAATT--ATAAAATTTAATTTTCAGATGA---TG-TGTTCCAAGTGACGTCCGTT--------------------------TTCCAGAGTTCTCTATTACTGCTGCACAAGTTTCAGCTGATACTGTTTGGAAC
gi|15 : GAAACTTGTGCAG--CAGTAATAGAGAACTTTGGAAAACGAAT-TGACGTCGTTA---TTCGTCAAAACGGACGTCACTTGGAACACATCATCT-GAAAATTAATTT-TTATGAAATTTCT-GACTAACATCTCA-TTTTCCAAGCAAAATTGACATATTTCATA-TGTAA-TAAAAT------TTTGAAATGTCCTCTTTAAAATTGTGTTTTCTGTTGTTACATATTGTAT-------AAAAAAT--GCAAA--TTATAAACCCACGAAACTGTTACATATATTTTGAAACACCCTGTA
gi|16 : TAGCTTGAGAAGGCATTTGGTG-ACA-ATGT--CATTTCTTTCAAGACAGAGAAAGAG------TGGTTTCTCCATTCACACGATATTAACCATC-TTGG--TTATTATTTGAGAGAT-A-CTTAT-AAAGGCAGAATATATAAA--CAAACACCAACTCCCG--GA---------ATGAATTGAAAGTGGCTATTGGAAGAAAAA--TGAGATTAGTATCAACTGAAAC--ATGCAGATCAGTAATAAAAAACTTTAAGAAACG
gi|18 : TACAAGGTGTTT-CAAACTATTTGTTGCAGTAACGACAGCGTATTACAGTAATTTGTAAGTATTATTTTTGT---GTAT-ACTAATGGAATTAACTAGAACA---GAGCCAATTATTAtttagagtggctatcacacagaagggac
gi|19 : CAGGGCGTTT-CAAAATATATGTTGGAGTTTCA--TGGGT-TTA---TAATTTG-------C--TTAATT---ACGGGAAA-ATGTAA--AAACAGAAAT---CA--CCATT-TGAAATAGTACA-TTTCTAAACGTTATTCCATA-------TACAATATATCAAGATTGTTTTTAAAAAAGCTGATCTTAGTCCATGCCTTTATAAAATGTCATTTC--GATGAAATTG-TATTtggtattaagaagaaaatgacgtaatctaagtggatgttcggttttgcaatgacactgttcacagaaagacatgggaaaactattaagcactattatgtatg
gi|2 : TACAGGGTGTTT-CAAAATATATGTTACAGTTTCA--TGGGT-TTA---TAATTTG-------CATTTTTTT---ATAT-AAT-ATGTAA--AAAAAGAAAA---CA--CAATT-TTAAAGAGGACA-TTTCAAAATTTTATTACATA-------TGCAATATGTCA--ATTTTGCTTGAAAAATGAGATGTTGGTCAGAAATTTCATAAAATTTAATTTTCAGATGA---TG-TGTTCCAAGTGACGTCCGTTTTGACGAATAACAACGTCAATTAGTTTCCCAGAGTTCTCTATTACTGTTGCACAAGTTTCAGTTGATACTGTTTGGAACTC-ATCTTGA-TGCA-TG--TGTTTA--CAAACAGAACTTCCGC-TTTTGGGGAATTGAAAAACCAAACATTTACGCTGAAAAGTCGTTGCGTGCTGAAAAAGTAACCGCAAGGGCCACA-----CTCAGTTCAACTGGACTAATTAGGCCGTTTTTCTTTGAAAACAGTGATGATGAAACAGAAAC-GATAAACAGCTGTCGATATTTGGAT---GTCATGCAGAAGAAATTCATTCCGGCATTAAAGAGGAGGAAA-GTGAATATGCACAGGATGTGGTTTCAGCAAGATGGAGCAACACCACACACA--T-----CTACAGAAGTTCTAGCATGGCTAAAGAAGACATTTGGCA-TCAGATTT--C-TGTCTTTCAGAACAGATCAATTT------TGGCCACCCCATTCCCCTGACCTCAACC--CGTTGGACTTCTT-AATGTGAGGTTA-TCT-T-AAAGACAGGGTGTATCAATGCAAAC--CAACATGTGTTGA---------A-GAGTTGAAAGCATCAATCAAGAGAGAGT--TCCAAACAGTATCAGCTGAAACTTGTGCAG--CAGTAATAAAGAACTTTGGAAAACGAAT-TGACGTAGTTA---TTCGTCAAAACGGACGTCACTTGGAACACATCATCT-GAAAATTAAATTGTTATGAAATTTCT-GACTAACATCTCA-TTTTTCAAGCAAAATAGACATATTTCATA-TGTAA-TAAAAT------TTTGAAATGTCCTCTTTAAAATTGTGTTTTCTGTTTTTACATATTGTATA-----AAAAAAAT--GCAAA--TTATAAACCTACGAAACTGTAACATATATTTTGAAACACCCTGTA
gi|20 : TACAGGGTCTCT-CAAAGTATATGTTACAGTTTCG--TGGGT-TTA---TAATTTG-------CACTTTTT----ATAC-AAT-ATGTAA--AAACAGAAAA---CA--CAATT-TTAAAATGGACA-TTTCCAATTTTTTTTACATA-------TGCAAT-----------TTGCTTGAAAAATGAGATGTTGGTCAAAAATTTCATAAAATTTAATTTCCAGATAA---TG-TGTTCCAAGTGA
gi|21 : ACAGGGTGTTT-CATAGTATATGTTACAGTac
gi|22 : ATACAAAC--GAACATGTATGGA---------A-GAGTTAAAA---TCA-TCAAGAGGGAAT--TCCCAACAGTATCAGCTGAAATTTTTGCAG--CAATGCTAGAGATC-TTGGAAAAAGATG-TGATGTCGTTA---TTCATCAAAACGGACGTCATTTTGAACAC-TCATCT-GAAAATTAAAGT-TTAaacaactgcgtattacagataaatggacagtattttgctgcgtattttacctcaaataaacaagcaattaaccaaattgtatatggcactgaaaggtttttgaaaatatttctttgagtgtcctgtgtcctgactgagtgttatcacgtattttc
gi|23 : TCCCCCCAACCATAACT--CTCTGGTCTTCTT-TTTGTGGGGTTA-TTT-G-AAGGACTAAGTTTA------CAAAC--CAAC
gi|24 : ggcagtttattatcttcaaaacccagaatgtctagcctaacTTCAAATGGTGTTTTCTGCTTTTCTATATTGCATA-----AATTAAA----CAAA--TTATTCACCCATGAAACTGTAACATACATTTTGAAACACCCTtcccaaacaattaactgaagaa
gi|3 : aTATAGGTTGTTT-CAAAATATATGTTACAGTTTCG--TGGGT-TTA---TAATTAG-------CATTTTTTT---ATAT-AAT-ACGTAA--AAACAGAAAA---CA--CAATT-TTAAAGAGGACA-TTTAAAAAATTTATTACAAA-------TGCAATATGTCA--ATTTTACTTGAAAAATGAGATATTGGTCAGAAATTTCATAAAATTTGA-TTTCAGCTGA---TACTGTT
gi|3 : gTTTCAGCTGATACTGTTTGGAACTCTCTCTTGA-TGCA-TG--TGTTTA--CAAACAGAACTTCCGC-TTTTGGGGAAGTGAAAACCAAAACATTTACGCTGAAAAGTCGTTGCATGCTGAAAAAGTAACCGTGTGGGCCGCA-----CTCAGTTCAACTGGACTAATTAGGCCGTTTTTCTTTGAAAACAGTGATGGTGAAACCGAAAC-GATAAACAGCTGTCGATATTTTGAT---GTGACGCAGAAGAAATTCATTCCGGCATTAAAGAAGAGGAAA-GTGAATATGCACAGGATGTGGTTTCAGCAAGACATAGCAACACCACACACA--T-----CTACAGAAGTTCTGGCATGGCTAAAGAATACATATGGCA-CCAGATTT--C-TGTCTTTCAGAACAGATCAAATT------TGGCCACCCCATTCATCTGACCTCAACC--CGTTAGACTTCTT-TATGTGAGGTTA-TCT-T-AAAGACAGGGTGTATCAATGCACAC--CAACATGTGTTGA---------A-GGGTTGAAAGCATCAATCAAGAGAGAGT--TCCAAACAGTATCAGCTGAAACTTGTGCAG--CAGTAATAGAGAACTTTGGAAAACGAAT-TGACGTCGTTA---TTCGTCAAAACGGACGTCACTTGGAACACATCATCT-GAAAATTAAATT-TTATGAAATTTCT-AACTAACATCTCATTTTTTCAAGCAAAATTGACATATTTCATA-TGTAA-TAAAAT------TTTGAAATGTCCTCTTTAAA---GTGTTTTCTGTTTTAACATATTGTAT------AAAAAAAT--GCAAA--TTATAAACCAACAAAACTGTAACATATATTTTGAAACACCCTGTAtggaactctctcttgatgcatgtgtttacaaacagaacttccgcttttggggaagtgaaaaccaaaacatttacgctgaaaagtcgttgcatgctgaaaaagtaaccgtgtgggccgcactcagttcaactggactaattaggccgtttttctttgaaaacagtgatggtgaaaccgaaacgataaacagctgtcgatattttgatgtgacgcagaagaaattcattccggcattaaagaagaggaaagtgaatatgcacaggatgtggtttcagcaagacatagcaacaccacacacatctacagaagttctggcatggctaaagaatacatatggcaccagatttctgtctttcagaacagatcaaatttggccaccccattcatctgacctcaacccgttagacttctttatgtgaggttatcttaaagacagggtgtatcaatgcacaccaacatgtgttgaagggttgaaagcatcaatcaagagagagttccaaacagtatcagctgaaacttgtgcagcagtaatagagaactttggaaaacgaattgacgtcgttattcgtcaaaacggacgtcacttggaacacatcatctgaaaattaaattttatgaaatttctaactaacatctcattttttcaagcaaaattgacatatttcatatgtaataaaattttgaaatgtcctctttaaagtgttttctgttttaacatattgtataaaaaaatgcaaattataaaccaacaaaactgtaacatatattttgaaacaccctgta
gi|4 : gtataggttgtttcaaaatatatgttacagtttcgtgggtttataattagcatttttttatataatacgtaaaaacagaaaacacaattttaaagaggacatttaaaaaatttattacaaatgcaatatgtcaattttacttgaaaaatgagatattggtcagaaatttcataaaatttgaGGTGTTT-CATAATATATGTTACAG
gi|4 : AAACCAAACATTTACTCTGAAAAGTCGTTGCATGCTGAAAAAGTAACCGTGTGGGCCTAA-----CTCAGTTCAACAGGACTAATTGGGCCGTTTTCCTTTGAAAACAGTGATGGTGAAACAGAAAC-GATAAACAGTTGTTGATATTTGGAT---GTTATGCAGTAGAAATTCATTCCGGCATTAAAGAGGGAGAAA-GTGGTTATGCACAGGGTGTGGTTTCAGCAAGATGGAGCAACACCACGCACA--T-----CTACAGAAGTTCaaacgacagtgtattacagatgatgggaatgtattttgttgtgtataatacatcaaattaacaagcaattaaacaaattttatatggcactgaaagttcgagaaaaataacgacgtcatgacgtcatgaatgacatttctgacgacatcaattcaggtgtttgtttacaaatggcgctgtccacagaaatgcacagagacattattaagtacttttatgaatgttaatatgttgctaaagttctcagaagaatgcaaaaaaatgtacccagaggaaaaaagtctaaacagaatgcaagttcatcgaatagtacggaaatctgagcaaacggggtcggttttagaccagcgtcacagtaatgccaggagaccaaggagcgctcgatctgatgagaacatcggtagtgtgagagcttctgttgcagaaacacctcacctctgcaagaaagatagtttacgatgtttctaaagcttgtgcttcaactgtatacaggattctacgatttgaactgaaacttattccatataaaatatcttttatgaaatatttgaagaaatcagacattgactattgtttgcaaactggataaaggaccaacagcatgttccggaagtactgtggtttagcccatttttaccttgatgccaaaccaaacatttactctgaaaagtcgttgcatgctgaaaaagtaaccgtgtgggcctaactcagttcaacaggactaattgggccgttttcctttgaaaacagtgatggtgaaacagaaacgataaacagttgttgatatttggatgttatgcagtagaaattcattccggcattaaagagggagaaagtggttatgcacagggtgtggtttcagcaagatggagcaacaccacgcacatctacagaagttcac
gi|5 : ggtgtttcataatatatgttacagaaacgacagtgtattacagatgatgggaatgtattttgttgtgtataatacatcaaattaacaagcaattaaacaaattttatatggcactgaaagttcgagaaaaataacgacgtcatgacgtcatgaatgacatttctgacgacatcaattcaggtgtttgtttacaaatggcgctgtccacagaaatgcacagagacattattaagtacttttatgaatgttaatatgttgctaaagttctcagaagaatgcaaaaaaatgtacccagaggaaaaaagtctaaacagaatgcaagttcatcgaatagtacggaaatctgagcaaacggggtcggttttagaccagcgtcacagtaatgccaggagaccaaggagcgctcgatctgatgagaacatcggtagtgtgagagcttctgttgcagaaacacctcacctctgcaagaaagatagtttacgatgtttctaaagcttgtgcttcaactgtatacaggattctacgatttgaactgaaacttattccatataaaatatcttttatgaaatatttgaagaaatcagacattgactattgtttgcaaactggataaaggaccaacagcatgttccggaagtactgtggtttagcccatttttaccttgatgccCTCTCTCTTGA-TGCA-TGATTGTGTAAACAAACAGAACTTCCGC-TTTTGGGGAAGTGAAAAACCAAACTATTAAGCTGAAAAGTTGTTGCATGCTGAAAA-GTAACCGTGTGGGCCGCA-----CTCAGTTCAACTGGACTAATTAGGTGGTTTTTCTTTGAAAACAGTGATTGTGAAACAGAAAC-GATAAACAGCTGTCAATATTGGGAT---GTCATGCAGAAGAAATTCATTCCGGCATTAAAAAGGAGGAAA-GTGAATATGCACAGGATGTGGTTTCAGCAAGATGGAGCAACACCACACACA--T-----CTACAGAAGTTCTAGCATTGTAAAAGAAGACATTTGGCA-TCAGATGT--C-TGTCTTTCAGAACAGATCAATTT------TGGCCACCCTATTCCCCTGACCTCAACC--CGTTGGACTTCTT-TCTGTGAGGCTA-TCT-T-AAAGACAGGGTTTATCAATGCAAAC--CAACATGTGTTGA---------A-GAATTGAAAGCATCAATCAAGAGGGAGT--TCCAAACAGTATCAGCTGAAACTTGTGCAG--CAGTAATAGAGAACTTTGGAAAACGAAT-TGATGTCGTTA---TTCGTCAAAGCGGACGTCACATGGAACACATCATCT-GAAAATTAAATT-TTATAATATTTCT-GACTAACACCTCA-TTTTTCAAGCAAAATTGACCTATTTCATA-TGTAA-TAAAAT------TTTGAAATGTCCTCTTTAAAATTGT-TTTTCTGTTTTTACATATTGTAT------AAAATAAT--GCAAA--TTATAAACCCACGAAACTGTAACATATA---TGAAACACCCTATAac
gi|6 : GCTGAAAAGTCGTTGCATGCTGAAAAAGTAACCGTAATGGCCGCA-----CTGAGTTCAACTGGACTAATTAGGCCATTTTTCTTTGAAAACACTGATGGTGAAACAGAATC-GATAAACAACTGTCGATATTTAGAT---GTCGTACAGAAGAAATTCATTCCGGCATTAAAGAGGAGGAAA-GTGAATATGCACAGGATGTGGTTTCAGCAAGATGGAGCAACACCACACACA--T-----CTACAGAAGTTCTAGCTTGGCTAAAGAAGACATTTGGCA-CCAGATTT--C-TGTCTTTCAGAACAGATCAATGT------TGGCCACTCCATTCCCCTGACCTCAACC--CGTTGGACTTCTT-TCTGTGAGGTTA-ACT-T-AAAGACAGGGTGTATCAATGCAAAC--CAACATGTGTTGA---------A-AAGTTGAAAGCATCAATCAAGAGAGAGT--TCCAAACTGTATCAGCTGAAACTTGTCCAG--CAGTAATAGAAAACT----------AAT-TGACGTCGTTA---TTCGTCAAAACGGACGTCACTTGGAACACATCATCT-GAAAATTAAATT-TTATGAAATTTCT-GACTAACACCTCA-TTTTTCAAGCAAAATTGACATATTTCAAA-TGTAA-TAAAAT------TTTGAAATGTCCTCTTTAAAATTGTATTTTCTGTTTTTACATATTGTAT------AAAACAAT--GCAAA--TTATAAACCCACGAAACTGTAACATATATTTTGAAACACCCTGTA
gi|7 : AGGGTGTTT-CAAAATATATGTTACAGTTTCA--TGGGT-TTA---TTATTTG-------CATATTTTT---ATAT-AAT-ATGTAA--AAACAGAAAAAAACA--CAATT-TTAAAAAAGACA-TTTTAAAATTTTATTACATA-------TGCAATATGTCA--ATTTTGCTTGAAAAATGAGATGTTGGTCAGAACTTTCATAAAATTTAATTTTCAGATGA---TG-TGTTCCAAGTGACGTCCGTTTTGACGAATAACGACATCAATTAGTTTTCCAGAGTTCTCTATTACTGCTGCACAAGTTTCAGCTGATACTGTTTGGAACTCTCTCTTAA-TGCA-TG--TGTTTA--TAAACAGAACTTCCGC-TTTTGGGGAAGTGAAAATCCAAACTTTTACGCTGAAAAGTCGTTGCATGCTGAAAAAGTAGCCGTAATGGCCACA-----TTGAGTTCAACTGGACTAATTAGGCCATTTTTCTTTGAAAACACTGATGGTGAAACAGAAAC-GATAAACAGTTGTCGATATTTAGAT---GTCATGCAGAAGAAATTCATTCTGGCATTA
gi|8 : TTGAATGCAACG---GTTAA--CAAGCAAAACTGTAGA-TACCGGAGAAGGGGAGAACCAAATGTGTTTGTCGAGACGCCATTGCACGGCGAAAAGGTGACGGTTTGG-CCGCGTAAAGCTC---TCAG--GGAATTATTGGAACAATTT-CTATGAAGATAAAAACGAAGAAACTGCAACTGA--AACAG-------TA-------------------AAAATATTTTTACCAGCATAAAAAAAGACGAGACATTGATATTAATAT-ATATGGTATCAGCAAGGTGGCGCTGTTCC-CACACAGCC-----CTGCA-AATTCCCGACA-GGCTGGAGGAGAAAT---GCAGACA-ATTTGAC-T-TCGCTCAAAACG------TTTACAGAATGGCCGCCGAACTCGCCGGATCTAAGCC--CACCCGGCTTTTT-CTTGTGGGA--ACTCT-TGAAGGGCATGATTTA------CAAAC--CAATA
gi|9 : cattacagatgtgatttgattccaagatgaagcccatttttatGGTTT--C-TGTCTTTCAAGGCGGACCAATTT------TGGCGACCCCACTCCCCAAATCTCAACC--CGCTGGACTTCTT-CCTGTGGGGTTA-TCT-T-AAGG-CAGTGTC-AT-AGTGTAAAC--CAACATGTGTTGATCACCCGGAA-TAGTTGAAAACATCAATCAA-ATAAAAA--TCCAAACAGTATCCTCTGAAACCTGTGTAG--AAATGGTAGAGACCTTTGTGAAAC-ACTGTGACGCCGTTA---TTCGTCAGAAAGGACGTCACTTAGAACATATTATTTTGAAAATGACATT-TGAT-AAATATATAGATTGTGATCACA---------GC----TTGACATGTTACATA-TGGAA-TGAAAC------TTTGAACTGTTTTCTTTCAAATGGTGTTTTCAGTTTTTACATATTGCATAGATCTAAATAAATAAGCAAA--TTACAAccaaaggtaacggaagaactcaagaaagc
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|12 ): CAGGGTGGTTCAAATGTACAGTTATGACTGCATATTACAGATTAATGTGTTAGTATTGTTGTGTATACTATATTGAAAAAACAAGCATAGAACCAAATTATATATGGCACTAAAAGTTCGGGAAAAATTATAATGTCATGATGTCATCTATGATGTCATCTGATCAGGTGTTTTCACAGTGGGGCTGTTCACAAAATTGTTAGGCTCTATTATGAATGTTATTTTCTTGTTACTGTTGTAAGAAAAATGTAAAAACTATACCTAGAGGAAGAGAGATTCAGCAGAATGCAAGTT
Unaligned ( gi|17 ): TTTAAACCAACGACATTGTAATGGCGGCAGACCAAGTAGCATCATGTCTGACGAAAACATAGCCAGTGTGAAGTCTACTATTGCAGAACCACCACGACAGCCTGCAGAAAGGTCACGAGGTTTCATACACAAGTACACCGTTGCAGTATTTTTCGGTTTGACCGAAAACTTACTATATCTACATATGACATTATTGCTTATGTAGCAATTGAAGAAAGAAGACATTGACT
Unaligned ( gi|25 ): AACAGGCGGTTTCATAATATATGTTAAAATAAATACTGTGTAGTACAGATTAATGAGAAAGTA
Alignments
lowQualScore : 1111111 1111111 111 11111 11111111 111111 111111111 111111 222222
lowQualScore : 4 66 5 888 6666666 888 5 5 66 888 66 5 5 1 8888888 77 000 5 3 0 99 0 0 6 6 99 3 99 6 0 55 0 22222 5 0 0 888 5 55555555 1 66 5 66 5 444444 4 66 0 1 4 0 55 4 4 4 1 88 0 55 777777777 4 66 66 1 0 1 0 5 888 5 5 6 5 5 5 5 666666 0 3 666666 66 66
lowQualScore : . .. . ... ....... ... . . .. ... .. . . . ....... .. ... . . . .. . . . . .. . .. . . .. . ..... . . . ... . ........ . .. . .. . ...... . .. . . . . .. . . . . .. . .. ......... . .. .. . . . . . ... . . . . . . . ...... . . ...... .. ..
lowQualScore : 0 99 0 888 2222222 888 0 0 99 888 99 0 7 9 6666666 99 000 7 2 2 00 8 8 7 7 22 5 22 7 6 00 2 55555 0 2 2 888 7 33333333 7 77 6 99 0 444444 4 11 1 0 4 9 33 4 4 4 0 66 7 55 888888888 4 11 11 9 1 1 2 0 888 0 0 6 7 7 7 7 444444 2 0 666666 11 11
consensus : TACAGGGTGTTT-CAAAATATATGTTACAGTTTCG--TGGGT-TTA---TAATTTG-------CATTTTTTT---ATAT-AAT-ATGTAA--AAACAGAAAA---CA--CAATT-TTAAAGAGGACA-TTTCAAAATTTTATTACATA-------TGCAATATGTCA--ATTTTGCTTGAAAAATGAGATGTTGGTCAGAAATTTCATAAAATTTAATTTTCAGATGA---TG-TGTTCCAAGTGACGTCCGTTTTGACGAATAACGACGTCAATTAGTTTTCCAGAGTTCTCTATTACTGCTGCACAAGTTTCAGCTGATACTGTTTGGAACTCTCTCTTGA-TGCA-TG--TGTTTA--CAAACAGAACTTCCGC-TTTTGGGGAAGTGAAAAACCAAACATTTACGCTGAAAAGTCGTTGCATGCTGAAAAAGTAACCGTGNGGGCCGCA-----CTCAGTTCAACTGGACTAATTAGGCCGTTTTTCTTTGAAAACAGTGATGGTGAAACAGAAAC-GATAAACAGCTGTCGATATTTGGAT---GTCATGCAGAAGAAATTCATTCCGGCATTAAAGAGGAGGAAA-GTGGATATGCACAGGATGTGGTTTCAGCAAGATGGAGCAACACCACACACA--T-----CTACAGAAGTTCTAGCATGGCTAAAGAAGACATTTGGCA-NCAGATTT--C-TGTCTTTCAGAACGGATCAATTT------TGGCCACCCCATTCCCCCGACCTCAACC--CGTTGGACTTCTT-TCTGTGGGGTTA-TCT-T-AAAGACAGGGTNTATCAATGCAAAC--CAACATGTGTTGA---------A-GAGTTGAAAGCATCAATCAAGAGAGAGT--TCCAAACAGTATCAGCTGAAACTTGTGCAG--CAGTAATAGAGAACTTTGGAAAACGAAT-TGACGTCGTTA---TTCGTCAAAACGGACGTCACTTGGAACACATCATCT-GAAAATTAAATT-TTATGAAATTTCT-GACTAACATCTCA-TTTTTCAAGCAAAATTGACATATTTCATA-TGTAA-TAAAAT------TTTGAAATGTCCTCTTTAAAATTGTGTTTTCTGTTTTTACATATTGTATA-----AAAAAAAT--GCAAA--TTATAAACCCACGAAACTGTAACATATATTTTGAAACACCCTGTA
Reference ( family-2302 ) : TACAGGGTGTTT-CAAAATATATGTTACAGTTTCG--TGGGT-TTA---TAATTTG-------CATTTTTTT---ATAT-AAT-ATGTAA--AAACAGAAAA---CA--CAATT-TTAAAGAGGACA-TTTCAAAATTTTATTACATA-------TGCAATATGTCA--ATTTTGCTTGAAAAATGAGATGTTGGTCAGAAATTTCATAAAATTTAATTTTCAGATGA---TG-TGTTCCAAGTGACGTCCGTTTTGACGAATAACGACGTCAATTAGTTTTCCAGAGTTCTCTATTACTGCTGCACAAGTTTCAGCTGATACTGTTTGGAACTCTCTCTTGA-TGCA-TG--TGTTTA--CAAACAGAACTTCCGC-TTTTGGGGAAGTGAAAAACCAAACATTTACGCTGAAAAGTCGTTGCATGCTGAAAAAGTAACCGTGNGGGCCGCA-----CTCAGTTCAACTGGACTAATTAGGCCGTTTTTCTTTGAAAACAGTGATGGTGAAACAGAAAC-GATAAACAGCTGTCGATATTTGGAT---GTCATGCAGAAGAAATTCATTCCGGCATTAAAGAGGAGGAAA-GTGGATATGCACAGGATGTGGTTTCAGCAAGATGGAGCAACACCACACACA--T-----CTACAGAAGTTCTAGCATGGCTAAAGAAGACATTTGGCA-NCAGATTT--C-TGTCTTTCAGAACGGATCAATTT------TGGCCACCCCATTCCCCCGACCTCAACC--CGTTGGACTTCTT-TCTGTGGGGTTA-TCT-T-AAAGACAGGGTNTATCAATGCAAAC--CAACATGTGTTGA---------A-GAGTTGAAAGCATCAATCAAGAGAGAGT--TCCAAACAGTATCAGCTGAAACTTGTGCAG--CAGTAATAGAGAACTTTGGAAAACGAAT-TGACGTCGTTA---TTCGTCAAAACGGACGTCACTTGGAACACATCATCT-GAAAATTAAATT-TTATGAAATTTCT-GACTAACATCTCA-TTTTTCAAGCAAAATTGACATATTTCATA-TGTAA-TAAAAT------TTTGAAATGTCCTCTTTAAAATTGTGTTTTCTGTTTTTACATATTGTATA-----AAAAAAAT--GCAAA--TTATAAACCCACGAAACTGTAACATATATTTTGAAACACCCTGTA
gi|1 : GAAGCCTATCTTGA-TGAA-TG--TGTT-----AAACAGAACTTACGCCTTTTGGAGAAGTGAAAAACCAAACATTTACGCTGAAAAGTCATTGCATGCTGAAACAGTAACCG---------CA-----CTCAGTTCTTCTTTATTAATTGGGTCGTTTTTCTTTGAAAACAGTGATGGTGATACAGAAAC-GATAAACAGCTGTCGACATTTGGATCACATCACGAAGAAGAAATGCATTCCGGAATTAAACAGTAGGAAA-GTTGATATGAACAGGATGTGGGTTCATGAAGATGGAGCAATACCACAAATA--TATAGACTACAGAAGTTCTAGCTTCGGTAAAGAAGACATTTGGCA-TCATATTT--C-TGTGTTTCAGAACGGATCAATTG------CGGCCACCACAATCCCCTGACCTCAACC--CGTTGTACTTCTT-TCTGTGGGG------T-T-AAAGACAGGGTATATAACTGCAAAC--CAACATGTGTGGA---------A-GAGTTAAAAGCATAAA--AAAGGAGAATTCTCCAAA
gi|10 : acagggtgcttgtaatatatgttacagtaacgactgtgtattacagataagtaggaaagtaatttgctttgtataatgctttgtataaaacatcaaattaacaaacaattaaccaaattttatatggcactgaaagttcggggaaaattacgacgtcaagatgttatcaaatcaggtgtttgattacaaatggcactgtccacagaaatgcacagcgacatttttaagctcttttatgaaagtacatctgttgttaacgttgtaagaagaatgcagaaaatgtacccagaggaagaaagacgcaacagaattcaagttcatcgaaaagaacgacattctgaacaaacgggatcggttttaaaccagcgccacagtaatgccgggagaccaaggagcgcttggtctgatgagaacatggctagtgtgagagcttctgttgtagaaacacctcagcagtctgtaagacagatactttacgatgtttctaacgcaagtgcatcaacagtatacaggattctacgaattgacctgaaatcagacattgactaaaggttatcgtttgcaaacttggttaaggaccattacatgtttcgatgtattatggtttagcgacTTCTGTTGTTAC-TGTTGTA-------AGAAAAAT--GCAAAAGCTAT--ACCCA
gi|11 : tacattgcgtttcaaatatatatacactaacgactgcgtaacacagattactgtgagagtattttgctgtgtatactgtatcaaaataacaggcacataagcaaatttattatagcaccaatagtttgggatagttatggcgtaatctgtgacgtcatctaaacaatattttgttttgacaatagcgctgtccacagaaaggcacatatacattattaggctaGA---------G-GAGTTGAAAGTATCAATCAAGAGAGAAT--TCCTAACAGTATCAGCTGAAATTTGTGCTG--CAGCGGCAAAGAACT------------------GTCGTTAAAATTCATCAGAATGGGCATCAATTTGAACATATCATAT-GAAAATGATATT-TTGT-AAGGTACA-GACTGATATCATG-TTTTTCAAACAATCTTGACATGTTGTATACTATAACTGGAATAACCTTTTTGGAATGTCCTCTTTTAAATGGTGTTTA-------TATATAGTGTATA-----AATTAA----GCAAA--TTATAACCCCCGGAAACTGTAACATATATTTTGAGACACCCTGTgagaaagaaagatttagcagaatacaatttcatcgaaatgacattttataaaggcatggactaagatcag
gi|13 : CAGGATTTTTTCAAAATATATGTTACAGTTTTG--TGGGT-TTA---TAATTTG-------CATTTTTTT---ATAT-AAT-ATGTAA--ATACAGAAAA---CA--CAATT-TTAGAGAAGAAAATTTTTAAATTTTATTACATA-------TGCAATATGTCA--ATTTTGCTTGAAAAATGAGATGTTGGCCAGAAATTTCATAAAATTTAATTTTCAGATGA---TT-TGTTCCAAGTGACGTCCGTTTTGACGAATAACGAGTTCAGTTAGTTTTTCAGAGTTCTCTATTACTGCTGCACAAGTTTCAGCTGATACTGTT
gi|14 : TACAGGGTGTTT-CAAAATATATGTTACAGTTTCA--TGGCT-TTA---TAATTTG-------CATTTTTTTTTAATAT-AAT-ATGTAA--AAACAGAAAA---CA--CAATT-TTAAAGAGGACA-TTTCAAAATTGTATTACATAATAATTATGGTATATGTCA--ATTTTGCTTGAAAAATGAGATGTTGGTCAGAAATT--ATAAAATTTAATTTTCAGATGA---TG-TGTTCCAAGTGACGTCCGTT--------------------------TTCCAGAGTTCTCTATTACTGCTGCACAAGTTTCAGCTGATACTGTTTGGAAC
gi|15 : GAAACTTGTGCAG--CAGTAATAGAGAACTTTGGAAAACGAAT-TGACGTCGTTA---TTCGTCAAAACGGACGTCACTTGGAACACATCATCT-GAAAATTAATTT-TTATGAAATTTCT-GACTAACATCTCA-TTTTCCAAGCAAAATTGACATATTTCATA-TGTAA-TAAAAT------TTTGAAATGTCCTCTTTAAAATTGTGTTTTCTGTTGTTACATATTGTAT-------AAAAAAT--GCAAA--TTATAAACCCACGAAACTGTTACATATATTTTGAAACACCCTGTA
gi|16 : TAGCTTGAGAAGGCATTTGGTG-ACA-ATGT--CATTTCTTTCAAGACAGAGAAAGAG------TGGTTTCTCCATTCACACGATATTAACCATC-TTGG--TTATTATTTGAGAGAT-A-CTTAT-AAAGGCAGAATATATAAA--CAAACACCAACTCCCG--GA---------ATGAATTGAAAGTGGCTATTGGAAGAAAAA--TGAGATTAGTATCAACTGAAAC--ATGCAGATCAGTAATAAAAAACTTTAAGAAACG
gi|18 : TACAAGGTGTTT-CAAACTATTTGTTGCAGTAACGACAGCGTATTACAGTAATTTGTAAGTATTATTTTTGT---GTAT-ACTAATGGAATTAACTAGAACA---GAGCCAATTATTAtttagagtggctatcacacagaagggac
gi|19 : CAGGGCGTTT-CAAAATATATGTTGGAGTTTCA--TGGGT-TTA---TAATTTG-------C--TTAATT---ACGGGAAA-ATGTAA--AAACAGAAAT---CA--CCATT-TGAAATAGTACA-TTTCTAAACGTTATTCCATA-------TACAATATATCAAGATTGTTTTTAAAAAAGCTGATCTTAGTCCATGCCTTTATAAAATGTCATTTC--GATGAAATTG-TATTtggtattaagaagaaaatgacgtaatctaagtggatgttcggttttgcaatgacactgttcacagaaagacatgggaaaactattaagcactattatgtatg
gi|2 : TACAGGGTGTTT-CAAAATATATGTTACAGTTTCA--TGGGT-TTA---TAATTTG-------CATTTTTTT---ATAT-AAT-ATGTAA--AAAAAGAAAA---CA--CAATT-TTAAAGAGGACA-TTTCAAAATTTTATTACATA-------TGCAATATGTCA--ATTTTGCTTGAAAAATGAGATGTTGGTCAGAAATTTCATAAAATTTAATTTTCAGATGA---TG-TGTTCCAAGTGACGTCCGTTTTGACGAATAACAACGTCAATTAGTTTCCCAGAGTTCTCTATTACTGTTGCACAAGTTTCAGTTGATACTGTTTGGAACTC-ATCTTGA-TGCA-TG--TGTTTA--CAAACAGAACTTCCGC-TTTTGGGGAATTGAAAAACCAAACATTTACGCTGAAAAGTCGTTGCGTGCTGAAAAAGTAACCGCAAGGGCCACA-----CTCAGTTCAACTGGACTAATTAGGCCGTTTTTCTTTGAAAACAGTGATGATGAAACAGAAAC-GATAAACAGCTGTCGATATTTGGAT---GTCATGCAGAAGAAATTCATTCCGGCATTAAAGAGGAGGAAA-GTGAATATGCACAGGATGTGGTTTCAGCAAGATGGAGCAACACCACACACA--T-----CTACAGAAGTTCTAGCATGGCTAAAGAAGACATTTGGCA-TCAGATTT--C-TGTCTTTCAGAACAGATCAATTT------TGGCCACCCCATTCCCCTGACCTCAACC--CGTTGGACTTCTT-AATGTGAGGTTA-TCT-T-AAAGACAGGGTGTATCAATGCAAAC--CAACATGTGTTGA---------A-GAGTTGAAAGCATCAATCAAGAGAGAGT--TCCAAACAGTATCAGCTGAAACTTGTGCAG--CAGTAATAAAGAACTTTGGAAAACGAAT-TGACGTAGTTA---TTCGTCAAAACGGACGTCACTTGGAACACATCATCT-GAAAATTAAATTGTTATGAAATTTCT-GACTAACATCTCA-TTTTTCAAGCAAAATAGACATATTTCATA-TGTAA-TAAAAT------TTTGAAATGTCCTCTTTAAAATTGTGTTTTCTGTTTTTACATATTGTATA-----AAAAAAAT--GCAAA--TTATAAACCTACGAAACTGTAACATATATTTTGAAACACCCTGTA
gi|20 : TACAGGGTCTCT-CAAAGTATATGTTACAGTTTCG--TGGGT-TTA---TAATTTG-------CACTTTTT----ATAC-AAT-ATGTAA--AAACAGAAAA---CA--CAATT-TTAAAATGGACA-TTTCCAATTTTTTTTACATA-------TGCAAT-----------TTGCTTGAAAAATGAGATGTTGGTCAAAAATTTCATAAAATTTAATTTCCAGATAA---TG-TGTTCCAAGTGA
gi|21 : ACAGGGTGTTT-CATAGTATATGTTACAGTac
gi|22 : ATACAAAC--GAACATGTATGGA---------A-GAGTTAAAA---TCA-TCAAGAGGGAAT--TCCCAACAGTATCAGCTGAAATTTTTGCAG--CAATGCTAGAGATC-TTGGAAAAAGATG-TGATGTCGTTA---TTCATCAAAACGGACGTCATTTTGAACAC-TCATCT-GAAAATTAAAGT-TTAaacaactgcgtattacagataaatggacagtattttgctgcgtattttacctcaaataaacaagcaattaaccaaattgtatatggcactgaaaggtttttgaaaatatttctttgagtgtcctgtgtcctgactgagtgttatcacgtattttc
gi|23 : TCCCCCCAACCATAACT--CTCTGGTCTTCTT-TTTGTGGGGTTA-TTT-G-AAGGACTAAGTTTA------CAAAC--CAAC
gi|24 : ggcagtttattatcttcaaaacccagaatgtctagcctaacTTCAAATGGTGTTTTCTGCTTTTCTATATTGCATA-----AATTAAA----CAAA--TTATTCACCCATGAAACTGTAACATACATTTTGAAACACCCTtcccaaacaattaactgaagaa
gi|3 : aTATAGGTTGTTT-CAAAATATATGTTACAGTTTCG--TGGGT-TTA---TAATTAG-------CATTTTTTT---ATAT-AAT-ACGTAA--AAACAGAAAA---CA--CAATT-TTAAAGAGGACA-TTTAAAAAATTTATTACAAA-------TGCAATATGTCA--ATTTTACTTGAAAAATGAGATATTGGTCAGAAATTTCATAAAATTTGA-TTTCAGCTGA---TACTGTT
gi|3 : gTTTCAGCTGATACTGTTTGGAACTCTCTCTTGA-TGCA-TG--TGTTTA--CAAACAGAACTTCCGC-TTTTGGGGAAGTGAAAACCAAAACATTTACGCTGAAAAGTCGTTGCATGCTGAAAAAGTAACCGTGTGGGCCGCA-----CTCAGTTCAACTGGACTAATTAGGCCGTTTTTCTTTGAAAACAGTGATGGTGAAACCGAAAC-GATAAACAGCTGTCGATATTTTGAT---GTGACGCAGAAGAAATTCATTCCGGCATTAAAGAAGAGGAAA-GTGAATATGCACAGGATGTGGTTTCAGCAAGACATAGCAACACCACACACA--T-----CTACAGAAGTTCTGGCATGGCTAAAGAATACATATGGCA-CCAGATTT--C-TGTCTTTCAGAACAGATCAAATT------TGGCCACCCCATTCATCTGACCTCAACC--CGTTAGACTTCTT-TATGTGAGGTTA-TCT-T-AAAGACAGGGTGTATCAATGCACAC--CAACATGTGTTGA---------A-GGGTTGAAAGCATCAATCAAGAGAGAGT--TCCAAACAGTATCAGCTGAAACTTGTGCAG--CAGTAATAGAGAACTTTGGAAAACGAAT-TGACGTCGTTA---TTCGTCAAAACGGACGTCACTTGGAACACATCATCT-GAAAATTAAATT-TTATGAAATTTCT-AACTAACATCTCATTTTTTCAAGCAAAATTGACATATTTCATA-TGTAA-TAAAAT------TTTGAAATGTCCTCTTTAAA---GTGTTTTCTGTTTTAACATATTGTAT------AAAAAAAT--GCAAA--TTATAAACCAACAAAACTGTAACATATATTTTGAAACACCCTGTAtggaactctctcttgatgcatgtgtttacaaacagaacttccgcttttggggaagtgaaaaccaaaacatttacgctgaaaagtcgttgcatgctgaaaaagtaaccgtgtgggccgcactcagttcaactggactaattaggccgtttttctttgaaaacagtgatggtgaaaccgaaacgataaacagctgtcgatattttgatgtgacgcagaagaaattcattccggcattaaagaagaggaaagtgaatatgcacaggatgtggtttcagcaagacatagcaacaccacacacatctacagaagttctggcatggctaaagaatacatatggcaccagatttctgtctttcagaacagatcaaatttggccaccccattcatctgacctcaacccgttagacttctttatgtgaggttatcttaaagacagggtgtatcaatgcacaccaacatgtgttgaagggttgaaagcatcaatcaagagagagttccaaacagtatcagctgaaacttgtgcagcagtaatagagaactttggaaaacgaattgacgtcgttattcgtcaaaacggacgtcacttggaacacatcatctgaaaattaaattttatgaaatttctaactaacatctcattttttcaagcaaaattgacatatttcatatgtaataaaattttgaaatgtcctctttaaagtgttttctgttttaacatattgtataaaaaaatgcaaattataaaccaacaaaactgtaacatatattttgaaacaccctgta
gi|4 : gtataggttgtttcaaaatatatgttacagtttcgtgggtttataattagcatttttttatataatacgtaaaaacagaaaacacaattttaaagaggacatttaaaaaatttattacaaatgcaatatgtcaattttacttgaaaaatgagatattggtcagaaatttcataaaatttgaGGTGTTT-CATAATATATGTTACAG
gi|4 : AAACCAAACATTTACTCTGAAAAGTCGTTGCATGCTGAAAAAGTAACCGTGTGGGCCTAA-----CTCAGTTCAACAGGACTAATTGGGCCGTTTTCCTTTGAAAACAGTGATGGTGAAACAGAAAC-GATAAACAGTTGTTGATATTTGGAT---GTTATGCAGTAGAAATTCATTCCGGCATTAAAGAGGGAGAAA-GTGGTTATGCACAGGGTGTGGTTTCAGCAAGATGGAGCAACACCACGCACA--T-----CTACAGAAGTTCaaacgacagtgtattacagatgatgggaatgtattttgttgtgtataatacatcaaattaacaagcaattaaacaaattttatatggcactgaaagttcgagaaaaataacgacgtcatgacgtcatgaatgacatttctgacgacatcaattcaggtgtttgtttacaaatggcgctgtccacagaaatgcacagagacattattaagtacttttatgaatgttaatatgttgctaaagttctcagaagaatgcaaaaaaatgtacccagaggaaaaaagtctaaacagaatgcaagttcatcgaatagtacggaaatctgagcaaacggggtcggttttagaccagcgtcacagtaatgccaggagaccaaggagcgctcgatctgatgagaacatcggtagtgtgagagcttctgttgcagaaacacctcacctctgcaagaaagatagtttacgatgtttctaaagcttgtgcttcaactgtatacaggattctacgatttgaactgaaacttattccatataaaatatcttttatgaaatatttgaagaaatcagacattgactattgtttgcaaactggataaaggaccaacagcatgttccggaagtactgtggtttagcccatttttaccttgatgccaaaccaaacatttactctgaaaagtcgttgcatgctgaaaaagtaaccgtgtgggcctaactcagttcaacaggactaattgggccgttttcctttgaaaacagtgatggtgaaacagaaacgataaacagttgttgatatttggatgttatgcagtagaaattcattccggcattaaagagggagaaagtggttatgcacagggtgtggtttcagcaagatggagcaacaccacgcacatctacagaagttcac
gi|5 : ggtgtttcataatatatgttacagaaacgacagtgtattacagatgatgggaatgtattttgttgtgtataatacatcaaattaacaagcaattaaacaaattttatatggcactgaaagttcgagaaaaataacgacgtcatgacgtcatgaatgacatttctgacgacatcaattcaggtgtttgtttacaaatggcgctgtccacagaaatgcacagagacattattaagtacttttatgaatgttaatatgttgctaaagttctcagaagaatgcaaaaaaatgtacccagaggaaaaaagtctaaacagaatgcaagttcatcgaatagtacggaaatctgagcaaacggggtcggttttagaccagcgtcacagtaatgccaggagaccaaggagcgctcgatctgatgagaacatcggtagtgtgagagcttctgttgcagaaacacctcacctctgcaagaaagatagtttacgatgtttctaaagcttgtgcttcaactgtatacaggattctacgatttgaactgaaacttattccatataaaatatcttttatgaaatatttgaagaaatcagacattgactattgtttgcaaactggataaaggaccaacagcatgttccggaagtactgtggtttagcccatttttaccttgatgccCTCTCTCTTGA-TGCA-TGATTGTGTAAACAAACAGAACTTCCGC-TTTTGGGGAAGTGAAAAACCAAACTATTAAGCTGAAAAGTTGTTGCATGCTGAAAA-GTAACCGTGTGGGCCGCA-----CTCAGTTCAACTGGACTAATTAGGTGGTTTTTCTTTGAAAACAGTGATTGTGAAACAGAAAC-GATAAACAGCTGTCAATATTGGGAT---GTCATGCAGAAGAAATTCATTCCGGCATTAAAAAGGAGGAAA-GTGAATATGCACAGGATGTGGTTTCAGCAAGATGGAGCAACACCACACACA--T-----CTACAGAAGTTCTAGCATTGTAAAAGAAGACATTTGGCA-TCAGATGT--C-TGTCTTTCAGAACAGATCAATTT------TGGCCACCCTATTCCCCTGACCTCAACC--CGTTGGACTTCTT-TCTGTGAGGCTA-TCT-T-AAAGACAGGGTTTATCAATGCAAAC--CAACATGTGTTGA---------A-GAATTGAAAGCATCAATCAAGAGGGAGT--TCCAAACAGTATCAGCTGAAACTTGTGCAG--CAGTAATAGAGAACTTTGGAAAACGAAT-TGATGTCGTTA---TTCGTCAAAGCGGACGTCACATGGAACACATCATCT-GAAAATTAAATT-TTATAATATTTCT-GACTAACACCTCA-TTTTTCAAGCAAAATTGACCTATTTCATA-TGTAA-TAAAAT------TTTGAAATGTCCTCTTTAAAATTGT-TTTTCTGTTTTTACATATTGTAT------AAAATAAT--GCAAA--TTATAAACCCACGAAACTGTAACATATA---TGAAACACCCTATAac
gi|6 : GCTGAAAAGTCGTTGCATGCTGAAAAAGTAACCGTAATGGCCGCA-----CTGAGTTCAACTGGACTAATTAGGCCATTTTTCTTTGAAAACACTGATGGTGAAACAGAATC-GATAAACAACTGTCGATATTTAGAT---GTCGTACAGAAGAAATTCATTCCGGCATTAAAGAGGAGGAAA-GTGAATATGCACAGGATGTGGTTTCAGCAAGATGGAGCAACACCACACACA--T-----CTACAGAAGTTCTAGCTTGGCTAAAGAAGACATTTGGCA-CCAGATTT--C-TGTCTTTCAGAACAGATCAATGT------TGGCCACTCCATTCCCCTGACCTCAACC--CGTTGGACTTCTT-TCTGTGAGGTTA-ACT-T-AAAGACAGGGTGTATCAATGCAAAC--CAACATGTGTTGA---------A-AAGTTGAAAGCATCAATCAAGAGAGAGT--TCCAAACTGTATCAGCTGAAACTTGTCCAG--CAGTAATAGAAAACT----------AAT-TGACGTCGTTA---TTCGTCAAAACGGACGTCACTTGGAACACATCATCT-GAAAATTAAATT-TTATGAAATTTCT-GACTAACACCTCA-TTTTTCAAGCAAAATTGACATATTTCAAA-TGTAA-TAAAAT------TTTGAAATGTCCTCTTTAAAATTGTATTTTCTGTTTTTACATATTGTAT------AAAACAAT--GCAAA--TTATAAACCCACGAAACTGTAACATATATTTTGAAACACCCTGTA
gi|7 : AGGGTGTTT-CAAAATATATGTTACAGTTTCA--TGGGT-TTA---TTATTTG-------CATATTTTT---ATAT-AAT-ATGTAA--AAACAGAAAAAAACA--CAATT-TTAAAAAAGACA-TTTTAAAATTTTATTACATA-------TGCAATATGTCA--ATTTTGCTTGAAAAATGAGATGTTGGTCAGAACTTTCATAAAATTTAATTTTCAGATGA---TG-TGTTCCAAGTGACGTCCGTTTTGACGAATAACGACATCAATTAGTTTTCCAGAGTTCTCTATTACTGCTGCACAAGTTTCAGCTGATACTGTTTGGAACTCTCTCTTAA-TGCA-TG--TGTTTA--TAAACAGAACTTCCGC-TTTTGGGGAAGTGAAAATCCAAACTTTTACGCTGAAAAGTCGTTGCATGCTGAAAAAGTAGCCGTAATGGCCACA-----TTGAGTTCAACTGGACTAATTAGGCCATTTTTCTTTGAAAACACTGATGGTGAAACAGAAAC-GATAAACAGTTGTCGATATTTAGAT---GTCATGCAGAAGAAATTCATTCTGGCATTA
gi|8 : TTGAATGCAACG---GTTAA--CAAGCAAAACTGTAGA-TACCGGAGAAGGGGAGAACCAAATGTGTTTGTCGAGACGCCATTGCACGGCGAAAAGGTGACGGTTTGG-CCGCGTAAAGCTC---TCAG--GGAATTATTGGAACAATTT-CTATGAAGATAAAAACGAAGAAACTGCAACTGA--AACAG-------TA-------------------AAAATATTTTTACCAGCATAAAAAAAGACGAGACATTGATATTAATAT-ATATGGTATCAGCAAGGTGGCGCTGTTCC-CACACAGCC-----CTGCA-AATTCCCGACA-GGCTGGAGGAGAAAT---GCAGACA-ATTTGAC-T-TCGCTCAAAACG------TTTACAGAATGGCCGCCGAACTCGCCGGATCTAAGCC--CACCCGGCTTTTT-CTTGTGGGA--ACTCT-TGAAGGGCATGATTTA------CAAAC--CAATA
gi|9 : cattacagatgtgatttgattccaagatgaagcccatttttatGGTTT--C-TGTCTTTCAAGGCGGACCAATTT------TGGCGACCCCACTCCCCAAATCTCAACC--CGCTGGACTTCTT-CCTGTGGGGTTA-TCT-T-AAGG-CAGTGTC-AT-AGTGTAAAC--CAACATGTGTTGATCACCCGGAA-TAGTTGAAAACATCAATCAA-ATAAAAA--TCCAAACAGTATCCTCTGAAACCTGTGTAG--AAATGGTAGAGACCTTTGTGAAAC-ACTGTGACGCCGTTA---TTCGTCAGAAAGGACGTCACTTAGAACATATTATTTTGAAAATGACATT-TGAT-AAATATATAGATTGTGATCACA---------GC----TTGACATGTTACATA-TGGAA-TGAAAC------TTTGAACTGTTTTCTTTCAAATGGTGTTTTCAGTTTTTACATATTGCATAGATCTAAATAAATAAGCAAA--TTACAAccaaaggtaacggaagaactcaagaaagc
blockSeqs : . AC A CAG TAAGTAT TTA G A TT AAA GC A . A ATAATTA AG AAT C T CG A A AT T AA . AA TAAAG T . C GCC T GA G GA A ACAGAA C AT A A TT C A G A TA AC TCACCCGGA T . AT T G G . T G G A T . . . T AGATCT AA .
blockSeqs : . . . . . . . . . . . . . T . . . . T CA . . . T . . GT . . . . T T A G . . . T . T . TT . . . G TC . . . . . T G . . . . G . . . . . T A . .
blockSeqs : . . . . . . . . . . . . . A . . . . . . . . . T . . GT . . . . T A T G . . . C . A . TT . . . T TC . . . . . T G . . . . G . . . . . G A . .
blockSeqs : . . . . . . . . . . . . . C . . . . . . . T . . GT . . . . T T C G . . . T . A . CT . . . G TC . . . . . T G . . . . A . . . . . T A . .
blockSeqs : . . . . . . . . . . . . . A . . . . . . . A . . AA . . . . T T T G . . . T . A . TT . . . T TC . . . . . T G . . . . G . . . . . T . . .
blockSeqs : . . . . . . . . . . . . . A . . . . AA . . . . T . C . . . . T . G . TT . . . G T . . . . . T G . . . . . . . . . . G . . .
blockSeqs : . . . . . . . . . . . . TT . . . . . . . G . A . T . . . T . . . . . . T . . . . . . . . .
blockSeqs : . A . . . . . . . C . . . . . . . . . . .
blockSeqs : . .
blockSeqCons : GN *** T******* TT ** *** ****** **
originalCons : TACAGGGTGTTT-CAAAATATATGTTACAGTTTCG--TGGGT-TTA---TAATTTG-------CATTTTTTT---ATAT-AAT-ATGTAA--AAACAGAAAA---CA--CAATT-TTAAAGAGGACA-TTTCAAAATTTTATTACATA-------TGCAATATGTCA--ATTTTGCTTGAAAAATGAGATGTTGGTCAGAAATTTCATAAAATTTAATTTTCAGATGA---TG-TGTTCCAAGTGACGTCCGTTTTGACGAATAACGACGTCAATTAGTTTTCCAGAGTTCTCTATTACTGCTGCACAAGTTTCAGCTGATACTGTTTGGAACTCTCTCTTGA-TGCA-TG--TGTTTA--CAAACAGAACTTCCGC-TTTTGGGGAAGTGAAAAACCAAACATTTACGCTGAAAAGTCGTTGCATGCTGAAAAAGTAACCGTGNGGGCCGCA-----CTCAGTTCAACTGGACTAATTAGGCCGTTTTTCTTTGAAAACAGTGATGGTGAAACAGAAAC-GATAAACAGCTGTCGATATTTGGAT---GTCATGCAGAAGAAATTCATTCCGGCATTAAAGAGGAGGAAA-GTGGATATGCACAGGATGTGGTTTCAGCAAGATGGAGCAACACCACACACA--T-----CTACAGAAGTTCTAGCATGGCTAAAGAAGACATTTGGCA-NCAGATTT--C-TGTCTTTCAGAACGGATCAATTT------TGGCCACCCCATTCCCCCGACCTCAACC--CGTTGGACTTCTT-TCTGTGGGGTTA-TCT-T-AAAGACAGGGTNTATCAATGCAAAC--CAACATGTGTTGA---------A-GAGTTGAAAGCATCAATCAAGAGAGAGT--TCCAAACAGTATCAGCTGAAACTTGTGCAG--CAGTAATAGAGAACTTTGGAAAACGAAT-TGACGTCGTTA---TTCGTCAAAACGGACGTCACTTGGAACACATCATCT-GAAAATTAAATT-TTATGAAATTTCT-GACTAACATCTCA-TTTTTCAAGCAAAATTGACATATTTCATA-TGTAA-TAAAAT------TTTGAAATGTCCTCTTTAAAATTGTGTTTTCTGTTTTTACATATTGTATA-----AAAAAAAT--GCAAA--TTATAAACCCACGAAACTGTAACATATATTTTGAAACACCCTGTA
finalCons : TACAGGGTGTTT-CAAAATATATGTTACAGTTTCG--TGGGT-TTA---TAATTTG-------CATTTTTTT---ATAT-AAT-ATGTAA--AAACAGAAAA---CA--CAATT-TTAAAGAGGACA-TTTCAAAATTTTATTACATA-------TGCAATATGTCA--ATTTTGCTTGAAAAATGAGATGTTGGTCAGAAATTTCATAAAATTTAATTTTCAGATGA---TG-TGTTCCAAGTGACGTCCGTTTTGACGAATAACGACGTCAATTAGTTTTCCAGAGTTCTCTATTACTGCTGCACAAGTTTCAGCTGATACTGTTTGGAACTCTCTCTTGA-TGCA-TG--TGTTTA--CAAACAGAACTTCCGC-TTTTGGGGAAGTGAAAAACCAAACATTTACGCTGAAAAGTCGTTGCATGCTGAAAAAGTAACCGTGNGGGCCGCA-----CTCAGTTCAACTGGACTAATTAGGCCGTTTTTCTTTGAAAACAGTGATGGTGAAACAGAAAC-GATAAACAGCTGTCGATATTTGGAT---GTCATGCAGAAGAAATTCATTCCGGCATTAAAGAGGAGGAAA-GTGGATATGCACAGGATGTGGTTTCAGCAAGATGGAGCAACACCACACACAT-------CTACAGAAGTTCTAGCATGGCTAAAGAAGACATTTGGCA-NCAGATTT--C-TGTCTTTCAGAACGGATCAATTT------TGGCCACCCCATTCCCCCGACCTCAACC--CGTTGGACTTCTT-TCTGTGGGGTTA-TCT-T-AAAGACAGGGTNTATCAATGCAAAC--CAACATGTGTTGA---------A-GAGTTGAAAGCATCAATCAAGAGAGAGT--TCCAAACAGTATCAGCTGAAACTTGTGCAG--CAGTAATAGAGAACTTTGGAAAACGAAT-TGACGTCGTTA---TTCGTCAAAACGGACGTCACTTGGAACACATCATCT-GAAAATTAAATT-TTATGAAATTTCT-GACTAACATCTCA-TTTTTCAAGCAAAATTGACATATTTCATA-TGTAA-TAAAAT------TTTGAAATGTCCTCTTTAAAATTGTGTTTTCTGTTTTTACATATTGTATA-----AAAAAAAT--GCAAA--TTATAAACCCACGAAACTGTAACATATATTTTGAAACACCCTGTA
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|12 ): CAGGGTGGTTCAAATGTACAGTTATGACTGCATATTACAGATTAATGTGTTAGTATTGTTGTGTATACTATATTGAAAAAACAAGCATAGAACCAAATTATATATGGCACTAAAAGTTCGGGAAAAATTATAATGTCATGATGTCATCTATGATGTCATCTGATCAGGTGTTTTCACAGTGGGGCTGTTCACAAAATTGTTAGGCTCTATTATGAATGTTATTTTCTTGTTACTGTTGTAAGAAAAATGTAAAAACTATACCTAGAGGAAGAGAGATTCAGCAGAATGCAAGTT
Unaligned ( gi|17 ): TTTAAACCAACGACATTGTAATGGCGGCAGACCAAGTAGCATCATGTCTGACGAAAACATAGCCAGTGTGAAGTCTACTATTGCAGAACCACCACGACAGCCTGCAGAAAGGTCACGAGGTTTCATACACAAGTACACCGTTGCAGTATTTTTCGGTTTGACCGAAAACTTACTATATCTACATATGACATTATTGCTTATGTAGCAATTGAAGAAAGAAGACATTGACT
Unaligned ( gi|25 ): AACAGGCGGTTTCATAATATATGTTAAAATAAATACTGTGTAGTACAGATTAATGAGAAAGTA
Alignments
lowQualScore : 1111111 1111111 111 11111 11111111 111111 111111111 111111 222222
lowQualScore : 4 66 5 888 6666666 888 5 5 66 888 66 5 5 1 8888888 77 000 5 3 0 99 0 0 6 6 99 3 99 6 0 55 0 22222 5 0 0 888 5 55555555 1 66 5 66 5 444444 4 66 0 1 4 0 55 4 4 4 1 88 0 55 777777777 4 66 66 1 0 1 0 5 888 5 5 6 5 5 5 5 666666 0 3 666666 66 66
lowQualScore : . .. . ... ....... ... . . .. ... .. . . . ....... .. ... . . . .. . . . . .. . .. . . .. . ..... . . . ... . ........ . .. . .. . ...... . .. . . . . .. . . . . .. . .. ......... . .. .. . . . . . ... . . . . . . . ...... . . ...... .. ..
lowQualScore : 0 99 0 888 2222222 888 0 0 99 888 99 0 7 9 6666666 99 000 7 2 2 00 8 8 7 7 22 5 22 7 6 00 2 55555 0 2 2 888 7 33333333 7 77 6 99 0 444444 4 11 1 0 4 9 33 4 4 4 0 66 7 55 888888888 4 11 11 9 1 1 2 0 888 0 0 6 7 7 7 7 444444 2 0 666666 11 11
consensus : TACAGGGTGTTT-CAAAATATATGTTACAGTTTCG--TGGGT-TTA---TAATTTG-------CATTTTTTT---ATAT-AAT-ATGTAA--AAACAGAAAA---CA--CAATT-TTAAAGAGGACA-TTTCAAAATTTTATTACATA-------TGCAATATGTCA--ATTTTGCTTGAAAAATGAGATGTTGGTCAGAAATTTCATAAAATTTAATTTTCAGATGA---TG-TGTTCCAAGTGACGTCCGTTTTGACGAATAACGACGTCAATTAGTTTTCCAGAGTTCTCTATTACTGCTGCACAAGTTTCAGCTGATACTGTTTGGAACTCTCTCTTGA-TGCA-TG--TGTTTA--CAAACAGAACTTCCGC-TTTTGGGGAAGTGAAAAACCAAACATTTACGCTGAAAAGTCGTTGCATGCTGAAAAAGTAACCGTGNGGGCCGCA-----CTCAGTTCAACTGGACTAATTAGGCCGTTTTTCTTTGAAAACAGTGATGGTGAAACAGAAAC-GATAAACAGCTGTCGATATTTGGAT---GTCATGCAGAAGAAATTCATTCCGGCATTAAAGAGGAGGAAA-GTGGATATGCACAGGATGTGGTTTCAGCAAGATGGAGCAACACCACACACA--T-----CTACAGAAGTTCTAGCATGGCTAAAGAAGACATTTGGCA-NCAGATTT--C-TGTCTTTCAGAACGGATCAATTT------TGGCCACCCCATTCCCCCGACCTCAACC--CGTTGGACTTCTT-TCTGTGGGGTTA-TCT-T-AAAGACAGGGTNTATCAATGCAAAC--CAACATGTGTTGA---------A-GAGTTGAAAGCATCAATCAAGAGAGAGT--TCCAAACAGTATCAGCTGAAACTTGTGCAG--CAGTAATAGAGAACTTTGGAAAACGAAT-TGACGTCGTTA---TTCGTCAAAACGGACGTCACTTGGAACACATCATCT-GAAAATTAAATT-TTATGAAATTTCT-GACTAACATCTCA-TTTTTCAAGCAAAATTGACATATTTCATA-TGTAA-TAAAAT------TTTGAAATGTCCTCTTTAAAATTGTGTTTTCTGTTTTTACATATTGTATA-----AAAAAAAT--GCAAA--TTATAAACCCACGAAACTGTAACATATATTTTGAAACACCCTGTA
Reference ( family-2302 ) : TACAGGGTGTTT-CAAAATATATGTTACAGTTTCG--TGGGT-TTA---TAATTTG-------CATTTTTTT---ATAT-AAT-ATGTAA--AAACAGAAAA---CA--CAATT-TTAAAGAGGACA-TTTCAAAATTTTATTACATA-------TGCAATATGTCA--ATTTTGCTTGAAAAATGAGATGTTGGTCAGAAATTTCATAAAATTTAATTTTCAGATGA---TG-TGTTCCAAGTGACGTCCGTTTTGACGAATAACGACGTCAATTAGTTTTCCAGAGTTCTCTATTACTGCTGCACAAGTTTCAGCTGATACTGTTTGGAACTCTCTCTTGA-TGCA-TG--TGTTTA--CAAACAGAACTTCCGC-TTTTGGGGAAGTGAAAAACCAAACATTTACGCTGAAAAGTCGTTGCATGCTGAAAAAGTAACCGTGNGGGCCGCA-----CTCAGTTCAACTGGACTAATTAGGCCGTTTTTCTTTGAAAACAGTGATGGTGAAACAGAAAC-GATAAACAGCTGTCGATATTTGGAT---GTCATGCAGAAGAAATTCATTCCGGCATTAAAGAGGAGGAAA-GTGGATATGCACAGGATGTGGTTTCAGCAAGATGGAGCAACACCACACACA--T-----CTACAGAAGTTCTAGCATGGCTAAAGAAGACATTTGGCA-NCAGATTT--C-TGTCTTTCAGAACGGATCAATTT------TGGCCACCCCATTCCCCCGACCTCAACC--CGTTGGACTTCTT-TCTGTGGGGTTA-TCT-T-AAAGACAGGGTNTATCAATGCAAAC--CAACATGTGTTGA---------A-GAGTTGAAAGCATCAATCAAGAGAGAGT--TCCAAACAGTATCAGCTGAAACTTGTGCAG--CAGTAATAGAGAACTTTGGAAAACGAAT-TGACGTCGTTA---TTCGTCAAAACGGACGTCACTTGGAACACATCATCT-GAAAATTAAATT-TTATGAAATTTCT-GACTAACATCTCA-TTTTTCAAGCAAAATTGACATATTTCATA-TGTAA-TAAAAT------TTTGAAATGTCCTCTTTAAAATTGTGTTTTCTGTTTTTACATATTGTATA-----AAAAAAAT--GCAAA--TTATAAACCCACGAAACTGTAACATATATTTTGAAACACCCTGTA
gi|1 : GAAGCCTATCTTGA-TGAA-TG--TGTT-----AAACAGAACTTACGCCTTTTGGAGAAGTGAAAAACCAAACATTTACGCTGAAAAGTCATTGCATGCTGAAACAGTAACCG---------CA-----CTCAGTTCTTCTTTATTAATTGGGTCGTTTTTCTTTGAAAACAGTGATGGTGATACAGAAAC-GATAAACAGCTGTCGACATTTGGATCACATCACGAAGAAGAAATGCATTCCGGAATTAAACAGTAGGAAA-GTTGATATGAACAGGATGTGGGTTCATGAAGATGGAGCAATACCACAAATA--TATAGACTACAGAAGTTCTAGCTTCGGTAAAGAAGACATTTGGCA-TCATATTT--C-TGTGTTTCAGAACGGATCAATTG------CGGCCACCACAATCCCCTGACCTCAACC--CGTTGTACTTCTT-TCTGTGGGG------T-T-AAAGACAGGGTATATAACTGCAAAC--CAACATGTGTGGA---------A-GAGTTAAAAGCATAAA--AAAGGAGAATTCTCCAAA
gi|10 : acagggtgcttgtaatatatgttacagtaacgactgtgtattacagataagtaggaaagtaatttgctttgtataatgctttgtataaaacatcaaattaacaaacaattaaccaaattttatatggcactgaaagttcggggaaaattacgacgtcaagatgttatcaaatcaggtgtttgattacaaatggcactgtccacagaaatgcacagcgacatttttaagctcttttatgaaagtacatctgttgttaacgttgtaagaagaatgcagaaaatgtacccagaggaagaaagacgcaacagaattcaagttcatcgaaaagaacgacattctgaacaaacgggatcggttttaaaccagcgccacagtaatgccgggagaccaaggagcgcttggtctgatgagaacatggctagtgtgagagcttctgttgtagaaacacctcagcagtctgtaagacagatactttacgatgtttctaacgcaagtgcatcaacagtatacaggattctacgaattgacctgaaatcagacattgactaaaggttatcgtttgcaaacttggttaaggaccattacatgtttcgatgtattatggtttagcgacTTCTGTTGTTAC-TGTTGTA-------AGAAAAAT--GCAAAAGCTAT--ACCCA
gi|11 : tacattgcgtttcaaatatatatacactaacgactgcgtaacacagattactgtgagagtattttgctgtgtatactgtatcaaaataacaggcacataagcaaatttattatagcaccaatagtttgggatagttatggcgtaatctgtgacgtcatctaaacaatattttgttttgacaatagcgctgtccacagaaaggcacatatacattattaggctaGA---------G-GAGTTGAAAGTATCAATCAAGAGAGAAT--TCCTAACAGTATCAGCTGAAATTTGTGCTG--CAGCGGCAAAGAACT------------------GTCGTTAAAATTCATCAGAATGGGCATCAATTTGAACATATCATAT-GAAAATGATATT-TTGT-AAGGTACA-GACTGATATCATG-TTTTTCAAACAATCTTGACATGTTGTATACTATAACTGGAATAACCTTTTTGGAATGTCCTCTTTTAAATGGTGTTTA-------TATATAGTGTATA-----AATTAA----GCAAA--TTATAACCCCCGGAAACTGTAACATATATTTTGAGACACCCTGTgagaaagaaagatttagcagaatacaatttcatcgaaatgacattttataaaggcatggactaagatcag
gi|13 : CAGGATTTTTTCAAAATATATGTTACAGTTTTG--TGGGT-TTA---TAATTTG-------CATTTTTTT---ATAT-AAT-ATGTAA--ATACAGAAAA---CA--CAATT-TTAGAGAAGAAAATTTTTAAATTTTATTACATA-------TGCAATATGTCA--ATTTTGCTTGAAAAATGAGATGTTGGCCAGAAATTTCATAAAATTTAATTTTCAGATGA---TT-TGTTCCAAGTGACGTCCGTTTTGACGAATAACGAGTTCAGTTAGTTTTTCAGAGTTCTCTATTACTGCTGCACAAGTTTCAGCTGATACTGTT
gi|14 : TACAGGGTGTTT-CAAAATATATGTTACAGTTTCA--TGGCT-TTA---TAATTTG-------CATTTTTTTTTAATAT-AAT-ATGTAA--AAACAGAAAA---CA--CAATT-TTAAAGAGGACA-TTTCAAAATTGTATTACATAATAATTATGGTATATGTCA--ATTTTGCTTGAAAAATGAGATGTTGGTCAGAAATT--ATAAAATTTAATTTTCAGATGA---TG-TGTTCCAAGTGACGTCCGTT--------------------------TTCCAGAGTTCTCTATTACTGCTGCACAAGTTTCAGCTGATACTGTTTGGAAC
gi|15 : GAAACTTGTGCAG--CAGTAATAGAGAACTTTGGAAAACGAAT-TGACGTCGTTA---TTCGTCAAAACGGACGTCACTTGGAACACATCATCT-GAAAATTAATTT-TTATGAAATTTCT-GACTAACATCTCA-TTTTCCAAGCAAAATTGACATATTTCATA-TGTAA-TAAAAT------TTTGAAATGTCCTCTTTAAAATTGTGTTTTCTGTTGTTACATATTGTAT-------AAAAAAT--GCAAA--TTATAAACCCACGAAACTGTTACATATATTTTGAAACACCCTGTA
gi|16 : TAGCTTGAGAAGGCATTTGGTG-ACA-ATGT--CATTTCTTTCAAGACAGAGAAAGAG------TGGTTTCTCCATTCACACGATATTAACCATC-TTGG--TTATTATTTGAGAGAT-A-CTTAT-AAAGGCAGAATATATAAA--CAAACACCAACTCCCG--GA---------ATGAATTGAAAGTGGCTATTGGAAGAAAAA--TGAGATTAGTATCAACTGAAAC--ATGCAGATCAGTAATAAAAAACTTTAAGAAACG
gi|18 : TACAAGGTGTTT-CAAACTATTTGTTGCAGTAACGACAGCGTATTACAGTAATTTGTAAGTATTATTTTTGT---GTAT-ACTAATGGAATTAACTAGAACA---GAGCCAATTATTAtttagagtggctatcacacagaagggac
gi|19 : CAGGGCGTTT-CAAAATATATGTTGGAGTTTCA--TGGGT-TTA---TAATTTG-------C--TTAATT---ACGGGAAA-ATGTAA--AAACAGAAAT---CA--CCATT-TGAAATAGTACA-TTTCTAAACGTTATTCCATA-------TACAATATATCAAGATTGTTTTTAAAAAAGCTGATCTTAGTCCATGCCTTTATAAAATGTCATTTC--GATGAAATTG-TATTtggtattaagaagaaaatgacgtaatctaagtggatgttcggttttgcaatgacactgttcacagaaagacatgggaaaactattaagcactattatgtatg
gi|2 : TACAGGGTGTTT-CAAAATATATGTTACAGTTTCA--TGGGT-TTA---TAATTTG-------CATTTTTTT---ATAT-AAT-ATGTAA--AAAAAGAAAA---CA--CAATT-TTAAAGAGGACA-TTTCAAAATTTTATTACATA-------TGCAATATGTCA--ATTTTGCTTGAAAAATGAGATGTTGGTCAGAAATTTCATAAAATTTAATTTTCAGATGA---TG-TGTTCCAAGTGACGTCCGTTTTGACGAATAACAACGTCAATTAGTTTCCCAGAGTTCTCTATTACTGTTGCACAAGTTTCAGTTGATACTGTTTGGAACTC-ATCTTGA-TGCA-TG--TGTTTA--CAAACAGAACTTCCGC-TTTTGGGGAATTGAAAAACCAAACATTTACGCTGAAAAGTCGTTGCGTGCTGAAAAAGTAACCGCAAGGGCCACA-----CTCAGTTCAACTGGACTAATTAGGCCGTTTTTCTTTGAAAACAGTGATGATGAAACAGAAAC-GATAAACAGCTGTCGATATTTGGAT---GTCATGCAGAAGAAATTCATTCCGGCATTAAAGAGGAGGAAA-GTGAATATGCACAGGATGTGGTTTCAGCAAGATGGAGCAACACCACACACA--T-----CTACAGAAGTTCTAGCATGGCTAAAGAAGACATTTGGCA-TCAGATTT--C-TGTCTTTCAGAACAGATCAATTT------TGGCCACCCCATTCCCCTGACCTCAACC--CGTTGGACTTCTT-AATGTGAGGTTA-TCT-T-AAAGACAGGGTGTATCAATGCAAAC--CAACATGTGTTGA---------A-GAGTTGAAAGCATCAATCAAGAGAGAGT--TCCAAACAGTATCAGCTGAAACTTGTGCAG--CAGTAATAAAGAACTTTGGAAAACGAAT-TGACGTAGTTA---TTCGTCAAAACGGACGTCACTTGGAACACATCATCT-GAAAATTAAATTGTTATGAAATTTCT-GACTAACATCTCA-TTTTTCAAGCAAAATAGACATATTTCATA-TGTAA-TAAAAT------TTTGAAATGTCCTCTTTAAAATTGTGTTTTCTGTTTTTACATATTGTATA-----AAAAAAAT--GCAAA--TTATAAACCTACGAAACTGTAACATATATTTTGAAACACCCTGTA
gi|20 : TACAGGGTCTCT-CAAAGTATATGTTACAGTTTCG--TGGGT-TTA---TAATTTG-------CACTTTTT----ATAC-AAT-ATGTAA--AAACAGAAAA---CA--CAATT-TTAAAATGGACA-TTTCCAATTTTTTTTACATA-------TGCAAT-----------TTGCTTGAAAAATGAGATGTTGGTCAAAAATTTCATAAAATTTAATTTCCAGATAA---TG-TGTTCCAAGTGA
gi|21 : ACAGGGTGTTT-CATAGTATATGTTACAGTac
gi|22 : ATACAAAC--GAACATGTATGGA---------A-GAGTTAAAA---TCA-TCAAGAGGGAAT--TCCCAACAGTATCAGCTGAAATTTTTGCAG--CAATGCTAGAGATC-TTGGAAAAAGATG-TGATGTCGTTA---TTCATCAAAACGGACGTCATTTTGAACAC-TCATCT-GAAAATTAAAGT-TTAaacaactgcgtattacagataaatggacagtattttgctgcgtattttacctcaaataaacaagcaattaaccaaattgtatatggcactgaaaggtttttgaaaatatttctttgagtgtcctgtgtcctgactgagtgttatcacgtattttc
gi|23 : TCCCCCCAACCATAACT--CTCTGGTCTTCTT-TTTGTGGGGTTA-TTT-G-AAGGACTAAGTTTA------CAAAC--CAAC
gi|24 : ggcagtttattatcttcaaaacccagaatgtctagcctaacTTCAAATGGTGTTTTCTGCTTTTCTATATTGCATA-----AATTAAA----CAAA--TTATTCACCCATGAAACTGTAACATACATTTTGAAACACCCTtcccaaacaattaactgaagaa
gi|3 : aTATAGGTTGTTT-CAAAATATATGTTACAGTTTCG--TGGGT-TTA---TAATTAG-------CATTTTTTT---ATAT-AAT-ACGTAA--AAACAGAAAA---CA--CAATT-TTAAAGAGGACA-TTTAAAAAATTTATTACAAA-------TGCAATATGTCA--ATTTTACTTGAAAAATGAGATATTGGTCAGAAATTTCATAAAATTTGA-TTTCAGCTGA---TACTGTT
gi|3 : gTTTCAGCTGATACTGTTTGGAACTCTCTCTTGA-TGCA-TG--TGTTTA--CAAACAGAACTTCCGC-TTTTGGGGAAGTGAAAACCAAAACATTTACGCTGAAAAGTCGTTGCATGCTGAAAAAGTAACCGTGTGGGCCGCA-----CTCAGTTCAACTGGACTAATTAGGCCGTTTTTCTTTGAAAACAGTGATGGTGAAACCGAAAC-GATAAACAGCTGTCGATATTTTGAT---GTGACGCAGAAGAAATTCATTCCGGCATTAAAGAAGAGGAAA-GTGAATATGCACAGGATGTGGTTTCAGCAAGACATAGCAACACCACACACA--T-----CTACAGAAGTTCTGGCATGGCTAAAGAATACATATGGCA-CCAGATTT--C-TGTCTTTCAGAACAGATCAAATT------TGGCCACCCCATTCATCTGACCTCAACC--CGTTAGACTTCTT-TATGTGAGGTTA-TCT-T-AAAGACAGGGTGTATCAATGCACAC--CAACATGTGTTGA---------A-GGGTTGAAAGCATCAATCAAGAGAGAGT--TCCAAACAGTATCAGCTGAAACTTGTGCAG--CAGTAATAGAGAACTTTGGAAAACGAAT-TGACGTCGTTA---TTCGTCAAAACGGACGTCACTTGGAACACATCATCT-GAAAATTAAATT-TTATGAAATTTCT-AACTAACATCTCATTTTTTCAAGCAAAATTGACATATTTCATA-TGTAA-TAAAAT------TTTGAAATGTCCTCTTTAAA---GTGTTTTCTGTTTTAACATATTGTAT------AAAAAAAT--GCAAA--TTATAAACCAACAAAACTGTAACATATATTTTGAAACACCCTGTAtggaactctctcttgatgcatgtgtttacaaacagaacttccgcttttggggaagtgaaaaccaaaacatttacgctgaaaagtcgttgcatgctgaaaaagtaaccgtgtgggccgcactcagttcaactggactaattaggccgtttttctttgaaaacagtgatggtgaaaccgaaacgataaacagctgtcgatattttgatgtgacgcagaagaaattcattccggcattaaagaagaggaaagtgaatatgcacaggatgtggtttcagcaagacatagcaacaccacacacatctacagaagttctggcatggctaaagaatacatatggcaccagatttctgtctttcagaacagatcaaatttggccaccccattcatctgacctcaacccgttagacttctttatgtgaggttatcttaaagacagggtgtatcaatgcacaccaacatgtgttgaagggttgaaagcatcaatcaagagagagttccaaacagtatcagctgaaacttgtgcagcagtaatagagaactttggaaaacgaattgacgtcgttattcgtcaaaacggacgtcacttggaacacatcatctgaaaattaaattttatgaaatttctaactaacatctcattttttcaagcaaaattgacatatttcatatgtaataaaattttgaaatgtcctctttaaagtgttttctgttttaacatattgtataaaaaaatgcaaattataaaccaacaaaactgtaacatatattttgaaacaccctgta
gi|4 : gtataggttgtttcaaaatatatgttacagtttcgtgggtttataattagcatttttttatataatacgtaaaaacagaaaacacaattttaaagaggacatttaaaaaatttattacaaatgcaatatgtcaattttacttgaaaaatgagatattggtcagaaatttcataaaatttgaGGTGTTT-CATAATATATGTTACAG
gi|4 : AAACCAAACATTTACTCTGAAAAGTCGTTGCATGCTGAAAAAGTAACCGTGTGGGCCTAA-----CTCAGTTCAACAGGACTAATTGGGCCGTTTTCCTTTGAAAACAGTGATGGTGAAACAGAAAC-GATAAACAGTTGTTGATATTTGGAT---GTTATGCAGTAGAAATTCATTCCGGCATTAAAGAGGGAGAAA-GTGGTTATGCACAGGGTGTGGTTTCAGCAAGATGGAGCAACACCACGCACA--T-----CTACAGAAGTTCaaacgacagtgtattacagatgatgggaatgtattttgttgtgtataatacatcaaattaacaagcaattaaacaaattttatatggcactgaaagttcgagaaaaataacgacgtcatgacgtcatgaatgacatttctgacgacatcaattcaggtgtttgtttacaaatggcgctgtccacagaaatgcacagagacattattaagtacttttatgaatgttaatatgttgctaaagttctcagaagaatgcaaaaaaatgtacccagaggaaaaaagtctaaacagaatgcaagttcatcgaatagtacggaaatctgagcaaacggggtcggttttagaccagcgtcacagtaatgccaggagaccaaggagcgctcgatctgatgagaacatcggtagtgtgagagcttctgttgcagaaacacctcacctctgcaagaaagatagtttacgatgtttctaaagcttgtgcttcaactgtatacaggattctacgatttgaactgaaacttattccatataaaatatcttttatgaaatatttgaagaaatcagacattgactattgtttgcaaactggataaaggaccaacagcatgttccggaagtactgtggtttagcccatttttaccttgatgccaaaccaaacatttactctgaaaagtcgttgcatgctgaaaaagtaaccgtgtgggcctaactcagttcaacaggactaattgggccgttttcctttgaaaacagtgatggtgaaacagaaacgataaacagttgttgatatttggatgttatgcagtagaaattcattccggcattaaagagggagaaagtggttatgcacagggtgtggtttcagcaagatggagcaacaccacgcacatctacagaagttcac
gi|5 : ggtgtttcataatatatgttacagaaacgacagtgtattacagatgatgggaatgtattttgttgtgtataatacatcaaattaacaagcaattaaacaaattttatatggcactgaaagttcgagaaaaataacgacgtcatgacgtcatgaatgacatttctgacgacatcaattcaggtgtttgtttacaaatggcgctgtccacagaaatgcacagagacattattaagtacttttatgaatgttaatatgttgctaaagttctcagaagaatgcaaaaaaatgtacccagaggaaaaaagtctaaacagaatgcaagttcatcgaatagtacggaaatctgagcaaacggggtcggttttagaccagcgtcacagtaatgccaggagaccaaggagcgctcgatctgatgagaacatcggtagtgtgagagcttctgttgcagaaacacctcacctctgcaagaaagatagtttacgatgtttctaaagcttgtgcttcaactgtatacaggattctacgatttgaactgaaacttattccatataaaatatcttttatgaaatatttgaagaaatcagacattgactattgtttgcaaactggataaaggaccaacagcatgttccggaagtactgtggtttagcccatttttaccttgatgccCTCTCTCTTGA-TGCA-TGATTGTGTAAACAAACAGAACTTCCGC-TTTTGGGGAAGTGAAAAACCAAACTATTAAGCTGAAAAGTTGTTGCATGCTGAAAA-GTAACCGTGTGGGCCGCA-----CTCAGTTCAACTGGACTAATTAGGTGGTTTTTCTTTGAAAACAGTGATTGTGAAACAGAAAC-GATAAACAGCTGTCAATATTGGGAT---GTCATGCAGAAGAAATTCATTCCGGCATTAAAAAGGAGGAAA-GTGAATATGCACAGGATGTGGTTTCAGCAAGATGGAGCAACACCACACACA--T-----CTACAGAAGTTCTAGCATTGTAAAAGAAGACATTTGGCA-TCAGATGT--C-TGTCTTTCAGAACAGATCAATTT------TGGCCACCCTATTCCCCTGACCTCAACC--CGTTGGACTTCTT-TCTGTGAGGCTA-TCT-T-AAAGACAGGGTTTATCAATGCAAAC--CAACATGTGTTGA---------A-GAATTGAAAGCATCAATCAAGAGGGAGT--TCCAAACAGTATCAGCTGAAACTTGTGCAG--CAGTAATAGAGAACTTTGGAAAACGAAT-TGATGTCGTTA---TTCGTCAAAGCGGACGTCACATGGAACACATCATCT-GAAAATTAAATT-TTATAATATTTCT-GACTAACACCTCA-TTTTTCAAGCAAAATTGACCTATTTCATA-TGTAA-TAAAAT------TTTGAAATGTCCTCTTTAAAATTGT-TTTTCTGTTTTTACATATTGTAT------AAAATAAT--GCAAA--TTATAAACCCACGAAACTGTAACATATA---TGAAACACCCTATAac
gi|6 : GCTGAAAAGTCGTTGCATGCTGAAAAAGTAACCGTAATGGCCGCA-----CTGAGTTCAACTGGACTAATTAGGCCATTTTTCTTTGAAAACACTGATGGTGAAACAGAATC-GATAAACAACTGTCGATATTTAGAT---GTCGTACAGAAGAAATTCATTCCGGCATTAAAGAGGAGGAAA-GTGAATATGCACAGGATGTGGTTTCAGCAAGATGGAGCAACACCACACACA--T-----CTACAGAAGTTCTAGCTTGGCTAAAGAAGACATTTGGCA-CCAGATTT--C-TGTCTTTCAGAACAGATCAATGT------TGGCCACTCCATTCCCCTGACCTCAACC--CGTTGGACTTCTT-TCTGTGAGGTTA-ACT-T-AAAGACAGGGTGTATCAATGCAAAC--CAACATGTGTTGA---------A-AAGTTGAAAGCATCAATCAAGAGAGAGT--TCCAAACTGTATCAGCTGAAACTTGTCCAG--CAGTAATAGAAAACT----------AAT-TGACGTCGTTA---TTCGTCAAAACGGACGTCACTTGGAACACATCATCT-GAAAATTAAATT-TTATGAAATTTCT-GACTAACACCTCA-TTTTTCAAGCAAAATTGACATATTTCAAA-TGTAA-TAAAAT------TTTGAAATGTCCTCTTTAAAATTGTATTTTCTGTTTTTACATATTGTAT------AAAACAAT--GCAAA--TTATAAACCCACGAAACTGTAACATATATTTTGAAACACCCTGTA
gi|7 : AGGGTGTTT-CAAAATATATGTTACAGTTTCA--TGGGT-TTA---TTATTTG-------CATATTTTT---ATAT-AAT-ATGTAA--AAACAGAAAAAAACA--CAATT-TTAAAAAAGACA-TTTTAAAATTTTATTACATA-------TGCAATATGTCA--ATTTTGCTTGAAAAATGAGATGTTGGTCAGAACTTTCATAAAATTTAATTTTCAGATGA---TG-TGTTCCAAGTGACGTCCGTTTTGACGAATAACGACATCAATTAGTTTTCCAGAGTTCTCTATTACTGCTGCACAAGTTTCAGCTGATACTGTTTGGAACTCTCTCTTAA-TGCA-TG--TGTTTA--TAAACAGAACTTCCGC-TTTTGGGGAAGTGAAAATCCAAACTTTTACGCTGAAAAGTCGTTGCATGCTGAAAAAGTAGCCGTAATGGCCACA-----TTGAGTTCAACTGGACTAATTAGGCCATTTTTCTTTGAAAACACTGATGGTGAAACAGAAAC-GATAAACAGTTGTCGATATTTAGAT---GTCATGCAGAAGAAATTCATTCTGGCATTA
gi|8 : TTGAATGCAACG---GTTAA--CAAGCAAAACTGTAGA-TACCGGAGAAGGGGAGAACCAAATGTGTTTGTCGAGACGCCATTGCACGGCGAAAAGGTGACGGTTTGG-CCGCGTAAAGCTC---TCAG--GGAATTATTGGAACAATTT-CTATGAAGATAAAAACGAAGAAACTGCAACTGA--AACAG-------TA-------------------AAAATATTTTTACCAGCATAAAAAAAGACGAGACATTGATATTAATAT-ATATGGTATCAGCAAGGTGGCGCTGTTCC-CACACAGCC-----CTGCA-AATTCCCGACA-GGCTGGAGGAGAAAT---GCAGACA-ATTTGAC-T-TCGCTCAAAACG------TTTACAGAATGGCCGCCGAACTCGCCGGATCTAAGCC--CACCCGGCTTTTT-CTTGTGGGA--ACTCT-TGAAGGGCATGATTTA------CAAAC--CAATA
gi|9 : cattacagatgtgatttgattccaagatgaagcccatttttatGGTTT--C-TGTCTTTCAAGGCGGACCAATTT------TGGCGACCCCACTCCCCAAATCTCAACC--CGCTGGACTTCTT-CCTGTGGGGTTA-TCT-T-AAGG-CAGTGTC-AT-AGTGTAAAC--CAACATGTGTTGATCACCCGGAA-TAGTTGAAAACATCAATCAA-ATAAAAA--TCCAAACAGTATCCTCTGAAACCTGTGTAG--AAATGGTAGAGACCTTTGTGAAAC-ACTGTGACGCCGTTA---TTCGTCAGAAAGGACGTCACTTAGAACATATTATTTTGAAAATGACATT-TGAT-AAATATATAGATTGTGATCACA---------GC----TTGACATGTTACATA-TGGAA-TGAAAC------TTTGAACTGTTTTCTTTCAAATGGTGTTTTCAGTTTTTACATATTGCATAGATCTAAATAAATAAGCAAA--TTACAAccaaaggtaacggaagaactcaagaaagc
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|12 ): CAGGGTGGTTCAAATGTACAGTTATGACTGCATATTACAGATTAATGTGTTAGTATTGTTGTGTATACTATATTGAAAAAACAAGCATAGAACCAAATTATATATGGCACTAAAAGTTCGGGAAAAATTATAATGTCATGATGTCATCTATGATGTCATCTGATCAGGTGTTTTCACAGTGGGGCTGTTCACAAAATTGTTAGGCTCTATTATGAATGTTATTTTCTTGTTACTGTTGTAAGAAAAATGTAAAAACTATACCTAGAGGAAGAGAGATTCAGCAGAATGCAAGTT
Unaligned ( gi|17 ): TTTAAACCAACGACATTGTAATGGCGGCAGACCAAGTAGCATCATGTCTGACGAAAACATAGCCAGTGTGAAGTCTACTATTGCAGAACCACCACGACAGCCTGCAGAAAGGTCACGAGGTTTCATACACAAGTACACCGTTGCAGTATTTTTCGGTTTGACCGAAAACTTACTATATCTACATATGACATTATTGCTTATGTAGCAATTGAAGAAAGAAGACATTGACT
Unaligned ( gi|25 ): AACAGGCGGTTTCATAATATATGTTAAAATAAATACTGTGTAGTACAGATTAATGAGAAAGTA