lowQualScore : 1
lowQualScore : 5 3 1 1 5
lowQualScore : . . . . .
lowQualScore : 2 3 7 7 0
consensus : AGAGGGGGTGTTCACGCTAG-TTT-TTT-CATNAATTCGA
Reference ( gi|16 ) : AGAGGGTGTGTTCACGCTAG-TTT-TTT-CATCAATTTGA
gi|10 : AGAGGGGGTATTCACGCTAG-TTT-TTT-CATCAATTTGA
gi|18 : AGAGGGGGAGTTCACGCTAG-TTT-TTC-CATCAATTCGAa
gi|9 : AGAGGGGGTGTTCAAGCTAG-TTT-TTT-CATTAATTCGA
gi|6 : AGAGGAGGTGTTCATGCTAG-TTT-TTT-CATAAATTTGAa
gi|11 : aataaaaAGAGGGGGTGTCCACGCTAT-TTT-TTT-CATCAATTT
gi|13 : aAGAAGGTGTGTTCACACTAG-TTC-TTT-CATAAATTCGAta
gi|12 : aAGAGGGTGTGTTTGCGCTAA-TTT-TTT-CATGAATTCGA
gi|7 : aAGAGAGGGTGTTCATGCTAG-TTT-TTT-CATTAATTCGA
gi|17 : aAGAGGGGATGCTCACGCTAG-TTT-TTT-CACAAATTTGAa
gi|20 : AGAGGAGGTGTTCACGCTA--TTT-TTT-CATAAATTTGA
gi|2 : AGAGGGGGTTTTCAGGCTGA-TTT-TTT-CATCAATTTGA
gi|14 : aataatcatcgaataaaaAGAGGG-ATGCTCACGCTAGTTTT-TTT-CATAAATTTGA
gi|15 : AGAGGGAGAGCTCACGCTAT-TTG-TTT-CATCAATTTGAa
gi|8 : aAGAGGGGGTGTTCACGGTAG-ATT-TTT-CATAAATT
gi|4 : AGAGGGGATGTTCACGCTAG-ATT-TTT-CAT-AATTccaa
gi|24 : atatacatgaataaaaAGAAGGGGTGTTCACGCTAG-ATT-TTT-CAT
gi|5 : AGAGGAGATGTTCACGCTAG-CTT-TTT-CAaact
gi|21 : tatatgaccgaataaaaGAGGGTGTGTTCACGCTAG-TTT-TTGACATCAATTTGca
gi|23 : GAGAGGGTGTTCATGCTAG-TTT-TTT-CATTAATT
gi|3 : GAGAG-GTGTTCACACTAG-CTT-TTT-CATCAATTTc
gi|1 : ctatgaccgaacaaaacGAGTGGGTGTTTACGCTAG-TTTATTT-CATCAATTT
gi|22 : cactaaaatttgaccgaataaaatAGGG-GTGTTCATGCTAG-CTT-TTT-CATTAATTCGAc
gi|19 : aAGGGGGTGTTCACGCTAGTTTT-TTT-CCTGAATTCGA
gi|25 : GTTCACGCTAG-TTT-TTT-CATTTATTCGAa
Alignments
lowQualScore : 3 1 1 2
lowQualScore : . . . .
lowQualScore : 2 6 6 6
consensus : AGAGGGGGTGTTCACGCTAG-TTT-TTT-CATNAATTCGA
Reference ( family-2273 ) : AGAGGGGGTGTTCACGCTAG-TTT-TTT-CATNAATTCGA
gi|1 : GAGTGGGTGTTTACGCTAG-TTTATTT-CATCAATT
gi|10 : cactaaaatttgaccgaataaaatAGAGGGGGTATTCACGCTAG-TTT-TTT-CATCAATTTGAtc
gi|11 : AGAGGGGGTGTCCACGCTAT-TTT-TTT-CATCAATTa
gi|12 : aAGAGGGTGTGTTTGCGCTAA-TTT-TTT-CATGAATTCGAtta
gi|13 : aAGAAGGTGTGTTCACACTAG-TTC-TTT-CATAAATTCGA
gi|14 : aAGAGGGA-TGCTCACGCTAGTTTT-TTT-CATAAATTTGA
gi|15 : AGAGGGAGAGCTCACGCTAT-TTG-TTT-CATCAATTTGAa
gi|16 : aAGAGGGTGTGTTCACGCTAG-TTT-TTT-CATCAATTTGA
gi|17 : AGAGGGGATGCTCACGCTAG-TTT-TTT-CACAAATTTGA
gi|18 : AGAGGGGGAGTTCACGCTAG-TTT-TTC-CATCAATTCGA
gi|19 : AGGGGGTGTTCACGCTAGTTTT-TTT-CCTGAATTCGA
gi|2 : AGAGGGGGTTTTCAGGCTGA-TTT-TTT-CATCAATTTGAa
gi|20 : aataatcatcgaataaaaAGAGGAGGTGTTCACGCTA--TTT-TTT-CATAAATTTGA
gi|21 : GAGGGTGTGTTCACGCTAG-TTT-TTGACATCAATTTG
gi|22 : AAGGGGTGTTCATGCTAG-CTT-TTT-CATTAATTCGA
gi|23 : GAGAGGGTGTTCATGCTAG-TTT-TTT-CATTAATTC
gi|24 : AGAAGGGGTGTTCACGCTAG-ATT-TTT-CATA
gi|25 : GGGGGGTTCACGCTAG-TTT-TTT-CATTTATTCGAct
gi|3 : GAGGTGTTCACACTAG-CTT-TTT-CATCAATT
gi|4 : ctatgaccgaacaaaacgaAGAGGGGATGTTCACGCTAG-ATT-TTT-CAT-AATTt
gi|5 : atatacatgaataaaaAGAGGAGATGTTCACGCTAG-CTT-TTT-CA
gi|6 : tatatgaccgaataaaaAGAGGAGGTGTTCATGCTAG-TTT-TTT-CATAAATTTGAca
gi|7 : aataaaaAGAGAGGGTGTTCATGCTAG-TTT-TTT-CATTAATTCGA
gi|8 : aAGAGGGGGTGTTCACGGTAG-ATT-TTT-CATAAATTCa
gi|9 : AGAGGGGGTGTTCAAGCTAG-TTT-TTT-CATTAATTCGAcaa
Alignments
lowQualScore : 3 1 1 2
lowQualScore : . . . .
lowQualScore : 2 6 6 6
consensus : AGAGGGGGTGTTCACGCTAG-TTT-TTT-CATNAATTCGA
Reference ( family-2273 ) : AGAGGGGGTGTTCACGCTAG-TTT-TTT-CATNAATTCGA
gi|1 : GAGTGGGTGTTTACGCTAG-TTTATTT-CATCAATT
gi|10 : cactaaaatttgaccgaataaaatAGAGGGGGTATTCACGCTAG-TTT-TTT-CATCAATTTGAtc
gi|11 : AGAGGGGGTGTCCACGCTAT-TTT-TTT-CATCAATTa
gi|12 : aAGAGGGTGTGTTTGCGCTAA-TTT-TTT-CATGAATTCGAtta
gi|13 : aAGAAGGTGTGTTCACACTAG-TTC-TTT-CATAAATTCGA
gi|14 : aAGAGGGA-TGCTCACGCTAGTTTT-TTT-CATAAATTTGA
gi|15 : AGAGGGAGAGCTCACGCTAT-TTG-TTT-CATCAATTTGAa
gi|16 : aAGAGGGTGTGTTCACGCTAG-TTT-TTT-CATCAATTTGA
gi|17 : AGAGGGGATGCTCACGCTAG-TTT-TTT-CACAAATTTGA
gi|18 : AGAGGGGGAGTTCACGCTAG-TTT-TTC-CATCAATTCGA
gi|19 : AGGGGGTGTTCACGCTAGTTTT-TTT-CCTGAATTCGA
gi|2 : AGAGGGGGTTTTCAGGCTGA-TTT-TTT-CATCAATTTGAa
gi|20 : aataatcatcgaataaaaAGAGGAGGTGTTCACGCTA--TTT-TTT-CATAAATTTGA
gi|21 : GAGGGTGTGTTCACGCTAG-TTT-TTGACATCAATTTG
gi|22 : AAGGGGTGTTCATGCTAG-CTT-TTT-CATTAATTCGA
gi|23 : GAGAGGGTGTTCATGCTAG-TTT-TTT-CATTAATTC
gi|24 : AGAAGGGGTGTTCACGCTAG-ATT-TTT-CATA
gi|25 : GGGGGGTTCACGCTAG-TTT-TTT-CATTTATTCGAct
gi|3 : GAGGTGTTCACACTAG-CTT-TTT-CATCAATT
gi|4 : ctatgaccgaacaaaacgaAGAGGGGATGTTCACGCTAG-ATT-TTT-CAT-AATTt
gi|5 : atatacatgaataaaaAGAGGAGATGTTCACGCTAG-CTT-TTT-CA
gi|6 : tatatgaccgaataaaaAGAGGAGGTGTTCATGCTAG-TTT-TTT-CATAAATTTGAca
gi|7 : aataaaaAGAGAGGGTGTTCATGCTAG-TTT-TTT-CATTAATTCGA
gi|8 : aAGAGGGGGTGTTCACGGTAG-ATT-TTT-CATAAATTCa
gi|9 : AGAGGGGGTGTTCAAGCTAG-TTT-TTT-CATTAATTCGAcaa
blockSeqs : T . A C
blockSeqs : T . . C
blockSeqs : . . . G
blockSeqs : . . . A
blockSeqs : . . . A
blockSeqs : . . . C
blockSeqs : . . . C
blockSeqs : . . . A
blockSeqs : . . . C
blockSeqs : . . . G
blockSeqs : . . . C
blockSeqs : . . . A
blockSeqs : . . . C
blockSeqs : . . . T
blockSeqs : . . . T
blockSeqs : . . . A
blockSeqs : . . . T
blockSeqs : . . . C
blockSeqs : . . . A
blockSeqs : . . . T
blockSeqs : . . . A
blockSeqs : . . . T
blockSeqs : . . . .
blockSeqs : . . .
blockSeqCons :
originalCons : AGAGGGGGTGTTCACGCTAG-TTT-TTT-CATNAATTCGA
finalCons : AGAGGGGGTGTTCACGCTAG-TTT-TTT-CATNAATTCGA
Alignments
lowQualScore : 3 1 1 2
lowQualScore : . . . .
lowQualScore : 2 6 6 6
consensus : AGAGGGGGTGTTCACGCTAG-TTT-TTT-CATNAATTCGA
Reference ( family-2273 ) : AGAGGGGGTGTTCACGCTAG-TTT-TTT-CATNAATTCGA
gi|1 : GAGTGGGTGTTTACGCTAG-TTTATTT-CATCAATT
gi|10 : cactaaaatttgaccgaataaaatAGAGGGGGTATTCACGCTAG-TTT-TTT-CATCAATTTGAtc
gi|11 : AGAGGGGGTGTCCACGCTAT-TTT-TTT-CATCAATTa
gi|12 : aAGAGGGTGTGTTTGCGCTAA-TTT-TTT-CATGAATTCGAtta
gi|13 : aAGAAGGTGTGTTCACACTAG-TTC-TTT-CATAAATTCGA
gi|14 : aAGAGGGA-TGCTCACGCTAGTTTT-TTT-CATAAATTTGA
gi|15 : AGAGGGAGAGCTCACGCTAT-TTG-TTT-CATCAATTTGAa
gi|16 : aAGAGGGTGTGTTCACGCTAG-TTT-TTT-CATCAATTTGA
gi|17 : AGAGGGGATGCTCACGCTAG-TTT-TTT-CACAAATTTGA
gi|18 : AGAGGGGGAGTTCACGCTAG-TTT-TTC-CATCAATTCGA
gi|19 : AGGGGGTGTTCACGCTAGTTTT-TTT-CCTGAATTCGA
gi|2 : AGAGGGGGTTTTCAGGCTGA-TTT-TTT-CATCAATTTGAa
gi|20 : aataatcatcgaataaaaAGAGGAGGTGTTCACGCTA--TTT-TTT-CATAAATTTGA
gi|21 : GAGGGTGTGTTCACGCTAG-TTT-TTGACATCAATTTG
gi|22 : AAGGGGTGTTCATGCTAG-CTT-TTT-CATTAATTCGA
gi|23 : GAGAGGGTGTTCATGCTAG-TTT-TTT-CATTAATTC
gi|24 : AGAAGGGGTGTTCACGCTAG-ATT-TTT-CATA
gi|25 : GGGGGGTTCACGCTAG-TTT-TTT-CATTTATTCGAct
gi|3 : GAGGTGTTCACACTAG-CTT-TTT-CATCAATT
gi|4 : ctatgaccgaacaaaacgaAGAGGGGATGTTCACGCTAG-ATT-TTT-CAT-AATTt
gi|5 : atatacatgaataaaaAGAGGAGATGTTCACGCTAG-CTT-TTT-CA
gi|6 : tatatgaccgaataaaaAGAGGAGGTGTTCATGCTAG-TTT-TTT-CATAAATTTGAca
gi|7 : aataaaaAGAGAGGGTGTTCATGCTAG-TTT-TTT-CATTAATTCGA
gi|8 : aAGAGGGGGTGTTCACGGTAG-ATT-TTT-CATAAATTCa
gi|9 : AGAGGGGGTGTTCAAGCTAG-TTT-TTT-CATTAATTCGAcaa