lowQualScore : 3333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333 1111111111111111111111111111111111
lowQualScore : 22 11 111 11 444444444444444444444444444 1 111 1111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 11 4444444444444444444444444444444444 1 111 55555555555555555555555 111 11111111 55555555555 111 55555555555555555555555555555555 11 222222 11 2 222222 44444444 2222222 111 1111 33333333 1 111 5555555 1 2222 111 333333
lowQualScore : 11 6 4 33 444 00 2 1 999999999999999999999999999 5 5 0 8 555 3 2 7777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777 8 8 6 8 4 0 8 33 7777777777777777777777777777777777 0 1 0 8 1 444 33333333333333333333333 1 5 0 1 777 88888888 99 0 33333333333 1 1 777 11111111111111111111111111111111 11 5 2 0 666666 11 1 0 333333 8 88888888 11 6666666 1 7 111 3 7777 3 66666666 0 777 0 7777777 0 8 9 5 5 8 3 4444 8 1 555 7 4 888888 4 2 3 3 55 4 5 2
lowQualScore : .. . . .. ... .. . . ........................... . . . . ... . . .................................................................................................................................................................................. . . . . . . . .. .................................. . . . . . ... ....................... . . . . ... ........ .. . ........... . . ... ................................ .. . . . ...... .. . . ...... . ........ .. ....... . . ... . .... . ........ . ... . ....... . . . . . . . .... . . ... . . ...... . . . . .. . . .
lowQualScore : 00 0 0 88 000 22 8 4 666666666666666666666666666 4 0 8 6 444 2 8 6666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666 0 0 0 0 6 8 2 88 8888888888888888888888888888888888 7 0 2 0 8 000 00000000000000000000000 4 0 8 8 222 22222222 22 8 00000000000 0 4 888 66666666666666666666666666666666 00 4 8 8 222222 44 0 0 000000 0 66666666 88 0000000 4 8 000 2 0000 2 22222222 0 555 2 5555555 2 0 4 4 6 0 8 6666 0 4 222 0 4 444444 4 9 6 6 00 4 3 2
consensus : NNNNATGTACCANATATCANATA--AAT---AAAAC-AATACTCACCTCACGACCATTAAATCCAAAC--CGTTCCACATG----NATACACACACAAACAATAAAGAATTTGTATAGAAACANCTGTACT----------------G----------ACATCGAA-GAAATATATAAAA--AT-AT-----AC-C-ATTAAAT---------CCGCTGGTN-------------CC-CC--TTCC-TGCTGGCGC----TCTNTA----NATAACGTCCCCCTTCA-C-----GATC--------C--TCAAGTTA-AA-AATACACTTTT-ACAACCGACAACGTTGAAATAAGCATGCAGCCCGTGATTCAGATACCC--ATTGACGGTCAATGAATGG-----A---------CA--TANCGG---------ACATTAAGCAAACTTGACTTTACCTCTACATAATATTATGG-TTNATGGC---CCGC--------AATACAAA--AA--CCTATCTAAGTATCANCGATAACTGATTCACTGTTATTTGTTT-------GTATTTTAGTGTTTATAGC--CATA--A--GTGCAAA--T----TTAT--------TCTTAT--TGTCATATATTGCTCCTAN----TTCACCTTATTTTA------AATATG-TACTTTCT-TTGTGCCACACAAAC-------ATGTATTTTCGCTATTNACGCGTGA----AAACGCTCTCCCC--------CACCC-C---AAGCCCAG----GACTAAGATTCAG-AACCAAAC-AAACGAA---ATT-GTTCACCACTACTGTACTACTA--CCCTATCT-GTAAATGTAANA-TTTA-ATGTTTTATGCCTCATNTTGTTTCACCATGTAT-T-TA--TATGTGATGTTACCTGAGTGAAAAT-AAAGAATACTGACAC
Reference ( gi|3 ) : CGTCATGTACCTAACATCAAATA--AAT---AAAAT-AATACTCACCTCGCGATCATTAAATCCAAAC--C--TCCACATG----CATGTTCAAACCAACAATAAAGACTCTGTATAGAAACAGCCGTACT----------------G----------ACATTGAATGAAATTTATAAAA--AT-AT-----ACCC-ACTGAAC---------CCGCTGGTG-------------CC-CC--TTTTATGCTAGTAC----ACTTTA----TATAACGCCCCCCTTCACC-----AACC--------C--TCAAGTTA-AA-AATACACTTTT-ACAACCGACAACGTTGAAATAAGCATGCAGCCCGTGATCCAGATACCC--ATTGACGGTCAATGAATGG-----A---------CA--TA-------------ACATTGAACAAACTTGACTTTACCTCTACATAATATTATGG-TTAATGGC---CTGC--------AAAACAAA--AA-TCCTATCTGAGTATTATCGATAACTGACTCTCTGTTATTTGTTT-------GTATTTTAGTGTTTATAGT--CATA--A--GCGCAAA--T----TTAT--------CCTTAT--TTTTACATATTGCTCCTAG----CTCAACTTATGTTA------AATGTG-TATTTTCT-TTGTGCCACACAAAC-------ATGTATTTTCACTATTTACGCGTAA----AAACGCTCTCCCC--------CACCC-C---AAGCC-------GACTAAGATTCAA-ATCAAAAC-AAACAAA---ACT-GTTCACCATTACTGTACTACTA--CCCTATAT-GTAAATGGAAAAATTTA-ATGTTTTATGCCTCATGTTGTTTCACCATGTAT-T-TA--TATGTGATGTTACCTGAGTGAAAAT-AAAGAATACTGATAC
gi|2 : ATGTACCATATATCAAATA--AAT---AGGAT-AATACTCACCTCACGACCATTAAATCTA-----C--TCGACATT----TATGCACAAAT--AC--TAAAGAATCTGTATA-AAACAACCTTACTCAATCTGACAGATTCAG----------ACATTTAAAGAAATATATAAAACTAC-ATTAAAGACCTAATTAAATATAATCTAGCCGCTGGTGACATACACTGAAACCGCCGATTCCACGTTTATGCTAGAACTCTATATATATAACGTTCCCCTTCACC-----GATC--------C--TCAAGTTA-AA-ATTACATTTTT-ACAACCGACAATGTTGAAATAAGCATGCATCCCGTGACTCGGATACAC--ATTGACGGTCAATGAATGG-----A---------CA--TAACGGCTACACCAGACAATGGGCAGACTTGACTATACCTCTACATAATATTATGGCTTGATAGC---CTGCTGCACAAAAAAATAAC--AATTCCTAACTGATCATGATT--TAAATG--------------GTTT-------G---TTCAGTGTTTATAGCCACATG--ATTGTGCAAAACTTTTATTAT--------CTTCATAACTTTATATA--GTCCCTAT----TTCAACGTATTTCA------AATATG-TACTTTC---TGTGTTACAC--AC-------ATGTATTTTCGCTATTAACGCTTGA----AAACA-TTTCC
gi|8 : AATATCATATATCAATTACAAAATCAGTACTCACCTCACTTCCATTAAATCCATTC--CATTTCACACG----AAT----ACACAAACAATAAAGAATATGTATAGataaaaaaacactgttaccctatctgcaaatgtaaaagtaaatgtgctattcctatactggttcaccatgtatttatacgtaatgttacctgcgtgcaaataaaaaaatattgaaactgagactgtact
gi|1 : tactttttgcgtacacaatgacatgtctgatgagtatcattatttattagtgtcctttctttaaaattgaaagtacccagaatactactataatcatccttatataatcaactgctcaaaacaactcgattaacacaatacaaaaagtaagtacatttgccaaatttgagctcagatcaataaagtaaaaaaatgcacaaaatcATA--CAT---AAAAC-AATATTCACATCAAAATCTATAAATCAGAAC--CATTTTAAGTGAAAACAT----ACACAAACAATTAGGAACTTGTATAGAAACATCTGTACG----------------G----------A--TCGA-TGAAATGTATAAAA--CTCAT------TGC-AGTAAAC---------CCGTCGGTT-------------CC-CC--TTTT-TGCTGGAAC----TCTATA----GATAACGCCCTC-TCCAGCGCAGGAACCAGTGTAGACGGTTAAGTTA-CA-AATATACTTTA-ACGACCGACAGCCTTAAAATAAACATGCAGCCCATGATACAGATACCCCCATTGACGGTCAATGAATTG-----AAATACCAGCCA--TATCAG---------ATATTAAACAAATTTGAATTTACCTCTGCATAATATCATGG-TTGATGACACTCTAC--------A---------------TATTCAAGTACCAGTGATACCTAATTCACTGTTATTTG-TT-------GAAACTTAGTGTGTATAA---CATACTA--GT----A--T----GTATAGAATAAGTCTTAC--TGCTACATATTGCTC--AGGTTTTTC--CTTACTTTA------GATATG-TACGT--T-TTGTACCACACAAAC-------ATGTATTTTCGATATTCTCCCATACCCCTATTCCCTCACCCCATCCCACTCACCC-C---ATCCCCAAAAATGACTAGGATTCAG-AACCAACC-CAAC-AA---ATT-ACTCACACTAACTGTACTACTACCCCCTATAT-GTAAATG------TTTA-A--TTTAATGTTTTATGTTGTTTGACCATGTAT-G-TA--TATGTGCTATTACCTGAGTGAAAAC-AGAGAATACTGATAC
gi|12 : aatttctacgtaaatcaagagagttagaaaatgcacaaaaataactA--AAG---AAAAA-AATACTAACCTCGCGATCATTAAACCCAAAC--CGTTCCACATA----CATATATACACAAACAATACCGAATTTGTATAGAAACACCTGTACT----------------G----------Atgcaaaaaataaaatggatatatctaacacattttt
gi|7 : aaatctacaaaacaaaaaagacagaacaaaaaatagtatcgtgcaaAT---AAAGC-AATACCCACCTCACGGCAATTAAATCTAAACAAT--TACGCATG----AATACACAAACCATAAATAA---CT-TGTATAGAAACAGCTGTACT----------------G----------A
gi|4 : tgtcaaccaatcaaatataataccaggacaggaaatgtacgttttgtatacttaatcacctgacagatgagtatcattatttaatagtatgtcccttctttaaaaataaaagaaaacatttgttaccataatattactataaatattcaaataccctgaaatactaacaactgcttacaacaaactcaatttatacaccacaaaaagtcggtacatttgtcaaattactgcccaaatcaataaagaaaatatgcacaacaaaaatacaattcacaatattGTAAAGAAACAGCTGTACT----------------GACCAATACAAACATTGAA--AAAGATAT------AT-AT-----A----ATTAAGT---------TCACT--TA-------------AC-C--------TGCTGGTTC----CCTTTT----TTGGAC-------TT----------GTC--------G--TCAAGTTA-AA-AATACTCTTTT-TCATCTGACAACATTGAAATAAGCATGCAGCCCGTGATTCAGATACCC--ATTGATGGTCATTGAATGGGAATTA---------CAGCTACACCAG-------ACATTAAGCAAACTTGATTTTATGTTCACATTATATTAAGA-TTCATGGC---AAAC--------AATACAAA--AA-A---ATCTAA-T-TTA--GAAAA-----TCTATGTT--TTGTTT-----------TTTATTATTGATTGC--CATA--T--GTGTAAA--A----TTAT--------TCTTAT--TGTCATATATTGCTCCTAT----TTCACCTGATTTTA------AATATG-TA------------CCACACAAAA-------ATATATATT---TGTAAAAGCTTGA----AAACGCT-TCCCC--------CACCC-CCTTAAGCCTAGCT--GACTAAAACTCAG-AACCAAAC-AAACAAA----TT-GATCACCACTACTGTACTACTA--CCCT-TACAGTAAATGTAAAA-TTTA-ATGTTTTGTGCCTCATGTTGTTTCACCATGTATATATA--TATGCGATGTTACCTGAGTGAAAAT-A
gi|16 : TGCTAGCAG----TCTATA----GACAATGTCTCCTTTTA-------------------------AGCTATAATAATAGATTTTT-ACAACTGACAATATTGAAATAAGCATGCAGCCTGTc
gi|14 : C--------C--TCAAGATA-AA-A-TACACTTTTTACAACCGACAACAC--AAATAAGCATGCAGTCCGTGATTCAAATACCC--ATTGACGGCCAATTAATGG-----G---------AA--TA-------------ATA
gi|5 : tGACTTTACCTCTACATAATGTTATGG-TTTATGGC---CTGC--------TATACAAA--AA-CCCTATCTGAGTATTATCGATAACTGACTCACTGTTATTTGTTT-------GTATTTTAGTGTTTATAGT--CATA--A--GTGCACA--T----TTAC--------TCTTAT--TTTCATATATTGCTCCTAG----TTCACCATATTTTA------AATGTGTTCTTTTTT-TTGTGCCACACAAACATGTAAAATGTATTTTCGCTATTTACGCGTGA----AAACGCTCTTCCC--------CACCC-C---AAGCC-------GACTTACATTCAA-AACCAAAC-AAACAAA---ACT-GTTCACCATAACTGTACTACCA--ACCTATAT-GTAAATGT-AAAATTTA-ATGTTTTATGCCTCATGTTATTTCACCATGTAT-T-TA--TATGTGATGCAACCTGAGTGAAAAT-AAAGAATACTGAgctacactagacatttaacaaac
gi|6 : ATGG-TTCATGGC---ACGC--------AATACAAAGGAA--CCTAACTAAGTATCAACCATAGCTTATTCACTGCTGTTTGTTTTTTAGGAGT-TTTTAACGTTAATTTT--CAAA--T--GTGTTAA--A----ATAT--------TCTTCT--TGTCATATATTGCTCCTTA----TTCATCTTAT-TTATACCTTGATGTG-TAC---CTATTGTGCCACACATAC-------ATATATATACGCAA---AAGCGTAA----AAACGCTCTCCCC--------CACCCAC---TAACC-------GACGAAGATTCAGTACCAAA-C-AAATGAA----TT-GTTCTTCACTACTTTAATACAAA-TCTTATCT-GTAAATGAAATATTTTA-TTTTTTTATGCCTCATTTTGTTTCACCTTGTAT-T-TA--TATATGTTATTACCTGAGTGAAAAT-GAAGAATAaaactgaataatgggtacc
gi|9 : TCAA-A-CAGAACTAAACAAACATACTTATGCAACACTACTGTGTCACTA---------T-GTAAA-------ATTTG-ATGGTTTATATCTCATTTT-TTTCATCATGGGT-T-TA--TATATAATGTTACCTGAGTGAATAT-AAAGAACATTAAT
gi|10 : acccaccaatataaccgtatcTACTTCTA--CCCTATCT-GTAAATGTAAGA-TATAGATGTTTCATGTCTCATGTTGTTTCACCTTGTAC-T-TA--TATGTGATGTTTCCTGAGTCGAAAT-AAAGACTACTGACACgacaagaaata
gi|2 : atgaACTGTTA--CCCTATCT-GCAAATGTAAAAGTA-A-ATGTGCTATTCCT-ATACTGGTTCACCATGTAT-T-TA--TACGTAATGTTACCTGCGTGCAAATAAAAAAATATTGAAACtgtttctacagtgatacaacacaagaagtttatacaa
gi|13 : atgtaccatatatcaaataaataggataatactcacctcacgaccattaaatctactcgacatttatgcacaaatactaaagaatctgtataaaacaaccttactcaatctgacagattcagacatttaaagaaatatataaaactacattaaagacctaattaaatataatctagccgctggtgacatacactgaaaccgccgattccacgtttatgctagaactctatatatataacgttccccttcaccgatcctcaagttaaaattacatttttacaaccgacaatgttgaaataagcatgcatcccgtgactcggatacacattgacggtcaatgaatggacataacggctacaccagacaatgggcagacttgactatacctctacataatattatggcttgatagcctgctgcacaaaaaaataacaattcctaactgatcatgatttaaatggtttgttcagtgtttatagccacatgattgtgcaaaacttttattatcttcataactttatatagtccctatttcaacgtatttcaaatatgtactttctgtgttacacacatgtattttcgctattaacgcttgaaaacatttccataaaaaaacTACTA--TCCTAACT-CTAAATG-ATTAATTTA-ATGTTTTATACCTCATTTTGATTCACCATGTAT-T-TA--AAGGTGATGCTACCATAGTGAAAtgagactgtact
gi|11 : actttcattacaaaccaaccaatcaaaaaagttgTATCT-GTAAAT--ATTATTTTA-TTGTTTCATACC-CATCTTGTTTTACCATGTAT-T-TACTTAATTG-TATTACCTGATTGAAAAT-AAAGAATA-TGA
gi|20 : cgtttttctgatttaataccgtttaaatatttgatcactgTTGTTTCACCATGTAT-T-TA--TATGTGATGTTACATGattctgaaaaataa
gi|17 : TAT-T-TA--TATGTTATGTTACCTGAGAGATAAT-GAAGAATAGTGACAC
3 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|15 ): ATGGTTCGTCGTACGCAATACAAAGAAAATATATCCGAGTATCAGTTTAGCTAACTTACTTTTAGCTGTTTTTTTTTTTATCGTTTATTGTCATATATATTGAGTTAGAATAT
Unaligned ( gi|18 ): TACTATGTCAGTAGAGCTTATACCAGTAAAATGTCACAACAAGATAAGACTTCATATAAA
Unaligned ( gi|19 ): ATTGTAATAGATATTCATATAGCATAGTGTGTTTTTC
Alignments
lowQualScore : 11111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 11 1 4444 111111 66666666666666666666 11111111111111111111111111111111111111111111111111111111111111111111111111111 11 11 6666666666666666666666 11 88888888888888888888888888888888888888 2222222222222 2222222 11111 33333333333 111 11111 22222222 111111 1111 222222222 2222222 11 9999999999999999999999999999999 1 11
lowQualScore : 1 7 11 0 3 3 0 1 1111 0 1 999999 00000000000000000000 1 44444444444444444444444444444444444444444444444444444444444444444444444444444 44 11 1 1 8 3 4444444444444444444444 1 3 6 2 11 33333333333333333333333333333333333333 5 1 44 5 8888888888888 0000000 1 4 4 0 0 44444 5 44444444444 2 444 66666 55 44444444 2 999999 1 1 6 4444 999999999 1111111 2 999 1 3 00 8 3333333333333333333333333333333 4 3 5 6 00 55 4 4 4 4 2 3 3 44 4 777 4
lowQualScore : . . .. . . . . . .... . . ...... .................... . ............................................................................. .. .. . . . . ...................... . . . . .. ...................................... . . .. . ............. ....... . . . . . ..... . ........... . ... ..... .. ........ . ...... . . . .... ......... ....... . ... . . .. . ............................... . . . . .. .. . . . . . . . .. . ... .
lowQualScore : 0 0 00 6 2 5 5 0 0000 3 0 222222 88888888888888888888 2 88888888888888888888888888888888888888888888888888888888888888888888888888888 22 00 0 0 6 2 8888888888888888888888 0 5 7 2 00 66666666666666666666666666666666666666 7 0 77 4 4444444444444 4444444 7 4 3 1 1 33333 7 66666666666 1 111 77777 88 22222222 5 222222 0 0 7 2222 000000000 7777777 5 777 0 7 33 0 0000000000000000000000000000000 7 2 2 7 66 55 0 9 0 0 4 3 3 66 0 888 5
consensus : NNNNATGTACCANATATCAA-ATAAATAAAACAATACTCACCTCGCGACCATTAAATCCAAACCATTCCACATGNATAT-TACACAAACAATAAAGAATTTGTATAGAAACAGCCGTA------CTGACA-----------TCGA-A-GAAATATATAAAA--A----T-AT-----ACCC-ATTAAAC---------CCGCTGGT-------------ACC-CC--TTTTA------TGCTAGNACTC--TATATATAACGTCCCCCTTCA---C--GATCC-----------TCAAGTTAAAAATACACTTTT-ACAACCGACAACGTTGAAATAAGCATGCAGCCCGTGATTCAGATA--CCCATTGACGGTCAATGAATGG-----A---------CA----TANCA---------G--ACATTAAACAAACTTGACTTTACCTCTACATAATATTATGG-TTNATGGCACGCAATACA---AA--AA-CC-TATCCGAGTATCA---NCGATAACTGACTCACTGTTATTT-----G-TTT-------GTATTTTAGTGTTTATNGT--CATA--A--GTGCAAANNTAT--------TCTTATTNTCA------TATATTGCTCCTANTTCACCTTATTT-TA----AATGTGTACTTTCT-TT-GTGCCACACAAACATGTA-------TTTTCGCTATTNACGCGTGAAAACGCT-CTCCCCCACCC-C---A--------AGCC-----------A---GACTAAGATTCAGAACCAAACAAACGAAATTGTTCACCACT-ACTGTACTACTA--CCCTATCTGTAAATG--T-AAAATTTA-ATGTTTT-ATGCCTCATNTTGTTTCACCATGTAT-T-TA--TATGTGATGTTACCTGAGTGAAAAT-AAAGAA---TACTGACAC
Reference ( family-2270 ) : NNNNATGTACCANATATCAN-ATAAATAAAACAATACTCACCTCACGACCATTAAATCCAAACCGTTCCACATGNATACACACACAAACAATAAAGAATTTGTATAGAAACANCTGTA------CTGACA-----------TCGA-A-GAAATATATAAAA--A----T-AT-----ACC--ATTAAAT---------CCGCTGGT-------------NCC-CC--TTCC-------TGCTGGCGCTC--TNTANATAACGTCCCCCTTCA---C--GATCC-----------TCAAGTTAAAAATACACTTTT-ACAACCGACAACGTTGAAATAAGCATGCAGCCCGTGATTCAGATA--CCCATTGACGGTCAATGAATGG-----A---------CA----TANCG---------G--ACATTAAGCAAACTTGACTTTACCTCTACATAATATTATGG-TTNATGGCCCGCAATACA---AA--AA-CC-TATCTAAGTATCA---NCGATAACTGATTCACTGTTATTT-----G-TTT-------GTATTTTAGTGTTTATAGC--CATA--A--GTGCAAATTTAT--------TCTTATTGTCA------TATATTGCTCCTANTTCACCTTATTT-TA----AATATGTACTTTCT-TT-GTGCCACACAAACATGTA-------TTTTCGCTATTNACGCGTGAAAACGCT-CTCCCCCACCC-C---A--------AGCCC----------AG--GACTAAGATTCAGAACCAAACAAACGAAATTGTTCACCACT-ACTGTACTACTA--CCCTATCTGTAAATG--T-AANATTTA-ATGTTTT-ATGCCTCATNTTGTTTCACCATGTAT-T-TA--TATGTGATGTTACCTGAGTGAAAAT-AAAGAA---TACTGACAC
gi|1 : ATGCACAAAA-ATAACTATACATAAAACAATATTCACATCAAAATCTATAAATCAGAACCATTTTAAGTGAAAACATACACAAACAATTAGGAACTTGTATAGAAACATCTGTA------CGGA-------------TCGA-T-GAAATGTATAAAA--C----TCAT-----TGC--AGTAAAC---------CCGTCGGT-------------TCC-CC--TTTT-------TGCTGGAACTC--TATAGATAACG-CCCTCTCCAGCGCAGGAACCAGTGTAGACGGTTAAGTTACAAATATACTTTA-ACGACCGACAGCCTTAAAATAAACATGCAGCCCATGATACAGATACCCCCATTGACGGTCAATGAATTG-----AAATACCAGCCA----TATCA---------G--ATATTAAACAAATTTGAATTTACCTCTGCATAATATCATGG-TTGATGACACTC--TACA-------------TATTCAAGTACCA---GTGATACCTAATTCACTGTTATTT-----G--TT-------GAAACTTAGTGTGTATAA---CATACTA--GT----ATGTATAGAATAAGTCTTACTGCTA------CATATTGCTCAGGTTTTTCCTTACTT-TA----GATATGTACGT--T-TT-GTACCACACAAACATGTA-------TTTTCGATATTCTCCCAT---ACCCCTATTCCCTCACCC-C---ATCCCACTCACCCCATCCCCAAAAAT--GACTAGGATTCAGAACCAACCCAAC-AAATTACTCA-CACTAACTGTACTACTACCCCCTATATGTAAATG--T-TTAATTTA-ATGTTTT-ATG-------TTGTTTGACCATGTAT-G-TA--TATGTGCTATTACCTGAGTGAAAAC-AGAGAA---TACTGATAC
gi|10 : aatttctacgtaaatcaagagagttagaaaTACTTCTA--CCCTATCTGTAAATG--T-AAGATATAGATGTTTC-ATGTCTCATGTTGTTTCACCTTGTAC-T-TA--TATGTGATGTTTCCTGAGTCGAAAT-AAAGAC---TACTGACACtgcaaaaaataaaatggatatatctaacacattttt
gi|11 : atgaTATCTGTAAATA--T-TAT-TTTA-TTGTTTC-ATACC-CATCTTGTTTTACCATGTAT-T-TACTTAATTG-TATTACCTGATTGAAAAT-AAAGAA---TA-TGAtgtttctacagtgatacaacacaagaagtttatacaa
gi|12 : cgtttttctgatttaataccgtttaaatatttgatcactgAAAGAAAAAAATACTAACCTCGCGATCATTAAACCCAAACCGTTCCACATACATATATACACAAACAATACCGAATTTGTATAGAAACACCTGTA------CTGAattctgaaaaataa
gi|13 : aaatctacaaaacaaaaaagacagaacaaaaaatagtatcgtgcaaTACTA--TCCTAACTCTAAATGATT-AA--TTTA-ATGTTTT-ATACCTCATTTTGATTCACCATGTAT-T-TA--AAGGTGATGCTACCATAGTGAAA
gi|14 : actttcattacaaaccaaccaatcaaaaaagttgTCC-----------TCAAGATAAAA-TACACTTTTTACAACCGACAACAC--AAATAAGCATGCAGTCCGTGATTCAAATA--CCCATTGACGGCCAATTAATGG-----G---------AA----TAATA---------GCTACACTAGACA
gi|15 : ATGG-TTCGTCGTACGCAATACAAAGAA--AA-TA-TATCCGAGTATCA---GTT-TAGCTAACTTACTTTTAGCT-----GTTTT-------TTTTTTTATCGTTTATTGT--CATA--tttaacaaac
gi|16 : -------TGCTAGCAGTC--TATAGACAATGTCTCCTTTTA---A--G---C-----------T--A--TAATAATAGATTTTT-ACAACTGACAATATTGAAATAAGCATGCAGCCTGTtatattgagttagaatat
gi|17 : TAT-T-TA--TATGTTATGTTACCTGAGAGATAAT-GAAGAA---TAGTGACAC
gi|2 : ATGTACCATATATCAA-ATAAATAGGATAATACTCACCTCACGACCATTAAATCTA-----CTCGACATTTAT----GCACAAATACTAAAGAATCTGTATA-AAACAACCTTACTCAATCTGACAGATTCAGACATTTAA-A-GAAATATATAAAACTA----C-ATTAAAGACCTAATTAAATATAATCTAGCCGCTGGTGACATACACTGAAACCGCCGATTCCACGTTTATGCTAGAACTCTATATATATAACGTTCCCCTTCAC--C--GATCC-----------TCAAGTTAAAATTACATTTTT-ACAACCGACAATGTTGAAATAAGCATGCATCCCGTGACTCGGATA--CACATTGACGGTCAATGAATGG-----A---------CA----TAACGGCTACACCAG--ACAATGGGCAGACTTGACTATACCTCTACATAATATTATGGCTTGATAGCCTGCTGCACA---AA--A----------AAATAACAATTCC--TAACTGA-TCA-TG--ATTTAAATGG-TTT-------G---TTCAGTGTTTATAGCCACATG--ATTGTGCAAAACTTT--------TATTATCTTCATAACTTTATATAGTCCCTATTTCAACGTATTT-CA----AATATGTACTTTC---T-GTGTTACAC--ACATGTA-------TTTTCGCTATTAACGCTTGAAAACA-T-TTCCagatatttattaaaatatgaa
gi|2 : ACTGTTA--CCCTATCTGCAAATG--T-AAAAGTAA-ATGTGCT-ATTCCT-ATACTGGTTCACCATGTAT-T-TA--TACGTAATGTTACCTGCGTGCAAATAAAAAAA---TATTGAAACataaaaaaacactgttaccctatctgcaaatgtaaaagtaaatgtgctattcctatactggttcaccatgtatttatacgtaatgttacctgcgtgcaaataaaaaaatattgaaactgagactgtact
gi|20 : atgtaccatatatcaaataaataggataatactcacctcacgaccattaaatctactcgacatttatgcacaaatactaaagaatctgtataaaacaaccttactcaatctgacagattcagacatttaaagaaatatataaaactacattaaagacctaattaaatataatctagccgctggtgacatacactgaaaccgccgattccacgtttatgctagaactctatatatataacgttccccttcaccgatcctcaagttaaaattacatttttacaaccgacaatgttgaaataagcatgcatcccgtgactcggatacacattgacggtcaatgaatggacataacggctacaccagacaatgggcagacttgactatacctctacataatattatggcttgatagcctgctgcacaaaaaaataacaattcctaactgatcatgatttaaatggtttgttcagtgtttatagccacatgattgtgcaaaacttttattatcttcataactttatatagtccctatttcaacgtatttcaaatatgtactttctgtgttacacacatgtattttcgctattaacgcttgaaaacatttccataaaaaaacTTGTTTCACCATGTAT-T-TA--TATGTGATGTTACATGtgagactgtact
gi|3 : ATGTACCTAACATCAA-ATAAATAAAATAATACTCACCTCGCGATCATTAAATCCAAACC--TCCACATGCATGTTCAAACCAACAATAAAGACTCTGTATAGAAACAGCCGTA------CTGACA-----------TTGA-ATGAAATTTATAAAA--A----T-AT-----ACCC-ACTGAAC---------CCGCTGGT-------------GCC-CC--TTTTA------TGCTAGTACAC--TTTATATAACGCCCCCCTTCA---CC-AACCC-----------TCAAGTTAAAAATACACTTTT-ACAACCGACAACGTTGAAATAAGCATGCAGCCCGTGATCCAGATA--CCCATTGACGGTCAATGAATGG-----A---------CA----TA---------------ACATTGAACAAACTTGACTTTACCTCTACATAATATTATGG-TTAATGGCCTGCAAAACA---AA--AATCC-TATCTGAGTATTA---TCGATAACTGACTCTCTGTTATTT-----G-TTT-------GTATTTTAGTGTTTATAGT--CATA--A--GCGCAAATTTAT--------CCTTATTTTTA------CATATTGCTCCTAGCTCAACTTATGT-TA----AATGTGTATTTTCT-TT-GTGCCACACAAACATGTA-------TTTTCACTATTTACGCGTAAAAACGCT-CTCCCCCACCC-C---A--------AGCC---------------GACTAAGATTCAAATCAAAACAAACAAAACTGTTCACCATT-ACTGTACTACTA--CCCTATATGTAAATG--GAAAAATTTA-ATGTTTT-ATGCCTCATGTTGTTTCACCATGTAT-T-TA--TATGTGATGTTACCTGAGTGAAAAT-AAAGAA---TACTGATAC
gi|4 : cgtcGTAAAGAAACAGCTGTA------CTGAC-------------CAATA-CAAACATTGAAAA--AGATAT-AT-----ATA--ATTAAGT---------TCACT--T-------------AAC-C--------------TGCTGGTTCCC--TTTTTTGGAC-------TT---------GTCG-----------TCAAGTTAAAAATACTCTTTT-TCATCTGACAACATTGAAATAAGCATGCAGCCCGTGATTCAGATA--CCCATTGATGGTCATTGAATGGGAATTA---------CAGCTACACCA---------G--ACATTAAGCAAACTTGATTTTATGTTCACATTATATTAAGA-TTCATGGCAAACAATACA---AA--AA-A---ATCTAA-T-TTA-----GA-AA---ATCTA-TGTT--TT-----G-TTT-----------TTTATTATTGATTGC--CATA--T--GTGTAAAATTAT--------TCTTATTGTCA------TATATTGCTCCTATTTCACCTGATTT-TA----AATATGTAC-------------CACACAAAAATATA-------TATTTG-TA--AAAGCTTGAAAACGCT--TCCCCCACCC-CCTTA--------AGCCT----------AGCTGACTAAAACTCAGAACCAAACAAAC-AAATTGATCACCACT-ACTGTACTACTA--CCCTTACAGTAAATG--T-AAAATTTA-ATGTTTT-GTGCCTCATGTTGTTTCACCATGTATATATA--TATGCGATGTTACCTGAGTGAAAAT-A
gi|5 : GACTTTACCTCTACATAATGTTATGG-TTTATGGCCTGCTATACA---AA--AA-CCCTATCTGAGTATTA---TCGATAACTGACTCACTGTTATTT-----G-TTT-------GTATTTTAGTGTTTATAGT--CATA--A--GTGCACATTTAC--------TCTTATTTTCA------TATATTGCTCCTAGTTCACCATATTT-TA----AATGTGTTCTTTTT-TTTGTGCCACACAAACATGTAAAATGTATTTTCGCTATTTACGCGTGAAAACGCT-CTTCCCCACCC-C---A--------AGCC---------------GACTTACATTCAAAACCAAACAAACAAAACTGTTCACCATA-ACTGTACTACCA--ACCTATATGTAAATG--T-AAAATTTA-ATGTTTT-ATGCCTCATGTTATTTCACCATGTAT-T-TA--TATGTGATGCAACCTGAGTGAAAAT-AAAGAA---TACTGAc
gi|6 : ATGG-TTCATGGCACGCAATACA---AAGGAA-CC-TAACTAAGTATCA---ACCATAGCTTATTCACTGCTGTTT-----G-TTTTTTAGGAGT-TTTTAACGTTAATTTT--CAAA--T--GTGTTAAAATAT--------TCTTCTTGTCA------TATATTGCTCCTTATTCATCTTATTTATACCTTGATGTGTAC---CTATT-GTGCCACACATACATATA-------TATACGCAA---AAGCGTAAAAACGCT-CTCCCCCACCCAC---T--------AACC---------------GACGAAGATTCAGTACCAAACAAATGAA-TTGTTCTTCACT-ACTTTAATACAAA-TCTTATCTGTAAATG--A-AATATTTT-ATTTTTTTATGCCTCATTTTGTTTCACCTTGTAT-T-TA--TATATGTTATTACCTGAGTGAAAAT-GAAGAA---TAaaactgaataatgggtacc
gi|7 : ATAAAGCAATACCCACCTCACGGCAATTAAATCTAAACAATTACGCATGAAT----ACACAAACCATAAATAACTTGTATAGAAACAGCTGTA------CTGA
gi|8 : tgtcaaccaatcaaatataataccaggacaggaaatgtacgttttgtatacttaatcacctgacagatgagtatcattatttaatagtatgtcccttctttaaaaataaaagaaaacatttgttaccataatattactataaatattcaaataccctgaaatactaacaactgcttacaacaaactcaatttatacaccacaaaaagtcggtacatttgtcaaattactgcccaaatcaataaagaaaatatgcacaacaaaaatacaattcacaatattTATCATATATCAA-TTACA-AAATCAGTACTCACCTCACTTCCATTAAATCCATTCCATTTCACACGAAT----ACACAAACAATAAAGAATATGTATAG
gi|9 : tactttttgcgtacacaatgacatgtctgatgagtatcattatttattagtgtcctttctttaaaattgaaagtacccagaatactactataatcatccttatataatcaactgctcaaaacaactcgattaacacaatacaaaaagtaagtacatttgccaaatttgagctcagatcaataaagtaaaaaaatgcacaaaatcaaCAGAACTAAACAAACATACTTATGCAACACT-ACTGTGTCACT---------------ATG--T-AAAATTTG-ATGGTTT-ATATCTCATTTT-TTTCATCATGGGT-T-TA--TATATAATGTTACCTGAGTGAATAT-AAAGAACATTAATGACA
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|18 ): TACTATGTCAGTAGAGCTTATACCAGTAAAATGTCACAACAAGATAAGACTTCATATAAA
Unaligned ( gi|19 ): ATTGTAATAGATATTCATATAGCATAGTGTGTTTTTC
Alignments
lowQualScore : 4444 111111 66666666666666666666 11 11111 8888888888888888888888888888888888888888888888888888888888888888888 11 77777777777777777777777777 11 55555555555555555555555555555 3333333 1111111 2222 2222222 11111 33333333333 111 11111 111111 1111 222222222 2222222 11 111 99999999999999999999999999 1 11
lowQualScore : 1 0 3 0 1 1 1 4444 6 0 1 0 999999 00000000000000000000 1 33 55555 9999999999999999999999999999999999999999999999999999999999999999999 2222 11 1 5 3 11111111111111111111111111 1 3 6 2 11 66666666666666666666666666666 2222222 5 1 11 5 0000000 5555 33 0000000 1 5 0 0 0 44444 5 44444444444 1 000 66666 99 6 22 6 1 999999 1 1 6 4444 999999999 1111111 2 999 1 3 00 8 444 77777777777777777777777777 4 3 5 6 00 4 4 4 2 3 3 44 4 777 4
lowQualScore : . . . . . . . .... . . . . ...... .................... . .. ..... ................................................................... .... .. . . . .......................... . . . . .. ............................. ....... . . .. . ....... .... .. ....... . . . . . ..... . ........... . ... ..... .. . .. . . ...... . . . .... ......... ....... . ... . . .. . ... .......................... . . . . .. . . . . . . .. . ... .
lowQualScore : 0 6 2 7 0 7 0 2222 7 3 0 7 222222 88888888888888888888 2 88 55555 2222222222222222222222222222222222222222222222222222222222222222222 8888 00 0 4 8 00000000000000000000000000 0 5 7 2 00 88888888888888888888888888888 5555555 7 0 77 4 3333333 9999 11 4444444 7 3 7 1 1 33333 7 66666666666 0 111 77777 22 7 00 7 0 222222 0 0 7 2222 000000000 7777777 5 777 0 7 33 0 000 44444444444444444444444444 7 2 2 7 66 0 0 0 4 3 3 66 0 888 5
consensus : NNNNATGTACCATATATCAAATAAATAAAACAATACTCACCTCGCGACCATTAAATCCAAACCATTCCACATGNA-AT-T-ACACAAACAATAAAGAATTTGTATAGAAACAGCCGTA------CTGACA-----------TCGA-A-GAAATAT--ATAAAA--AT-AT-----ACNC-A-TTAAAC---------CCGCTGGT-------------ACC-CC--TT------TTATGCTAGNACTC--TATANATAACGTCCCCCTTCA---C--GA----TCC-----------TCAAGTTAAAAATACACTTTT-ACAACCGACAACGTTGAAATAAGCATGCAGCCCGTGATTCAGATA--CCCATTGACGGTCAATGAATGG-----A---------CA----TANCAGCTACATTAAACAA-------ACTTGACTTTACCTCTACATAATATTATGG-TTNATGGCACGCAATACA---AA--AA-CC-TATCCGAGTATCA---NCGATAACTGACTCACTGTTATTT-----G-TTT-------GTATTTTAGTGTTTATNGT--CATA--A--G--TGCA-AAANT-ATTCTTATTNTCA------TATATTGCTCCTANTTCACCTTATTT-TA----AATGTGTACTTTCT-TT-GTGCCACACAAACATGTA-------TTTTCGCTATTNACGCGTGAAAACGCT-CTCCCCCACCC-C---AAGCC-A--------------------G---ACTAAGATTCAGAACCAAACAAACGAAATTGTTCACCACT-ACTGTACTACTA--CCCTATCTGTAAATGT-AAAATTTA-ATGTTTT-ATGCCTCATNTTGTTTCACCATGTAT-T-TA--TATGTGATGTTACCTGAGTGAAAAT-AAAGAA---TACTGACAC
Reference ( family-2270 ) : NNNNATGTACCANATATCAAATAAATAAAACAATACTCACCTCGCGACCATTAAATCCAAACCATTCCACATGNATAT-T-ACACAAACAATAAAGAATTTGTATAGAAACAGCCGTA------CTGACA-----------TCGA-A-GAAATAT--ATAAAA--AT-AT-----ACCC-A-TTAAAC---------CCGCTGGT-------------ACC-CC--TT------TTATGCTAGNACTC--TATATATAACGTCCCCCTTCA---C--GA----TCC-----------TCAAGTTAAAAATACACTTTT-ACAACCGACAACGTTGAAATAAGCATGCAGCCCGTGATTCAGATA--CCCATTGACGGTCAATGAATGG-----A---------CA----TANCAG--ACATTAAACAA-------ACTTGACTTTACCTCTACATAATATTATGG-TTNATGGCACGCAATACA---AA--AA-CC-TATCCGAGTATCA---NCGATAACTGACTCACTGTTATTT-----G-TTT-------GTATTTTAGTGTTTATNGT--CATA--A--G--TGCA-AANNT-ATTCTTATTNTCA------TATATTGCTCCTANTTCACCTTATTT-TA----AATGTGTACTTTCT-TT-GTGCCACACAAACATGTA-------TTTTCGCTATTNACGCGTGAAAACGCT-CTCCCCCACCC-C---AAGCC-A--------------------G---ACTAAGATTCAGAACCAAACAAACGAAATTGTTCACCACT-ACTGTACTACTA--CCCTATCTGTAAATGT-AAAATTTA-ATGTTTT-ATGCCTCATNTTGTTTCACCATGTAT-T-TA--TATGTGATGTTACCTGAGTGAAAAT-AAAGAA---TACTGACAC
gi|1 : ATACATAAAACAATATTCACATCAAAATCTATAAATCAGAACCATTTTAAGTGAAAACAT-ACACAAACAATTAGGAACTTGTATAGAAACATCTGTA------CGGA-------------TCGA-T-GAAATGT--ATAAAA--CTCAT------TGC-A-GTAAAC---------CCGTCGGT-------------TCC-CC--TT------TT-TGCTGGAACTC--TATAGATAACG-CCCTCTCCAGCGCAGGA----ACCAGTGTAGACGGTTAAGTTACAAATATACTTTA-ACGACCGACAGCCTTAAAATAAACATGCAGCCCATGATACAGATACCCCCATTGACGGTCAATGAATTG-----AAATACCAGCCA----TATCAG--ATATTAAACAA-------ATTTGAATTTACCTCTGCATAATATCATGG-TTGATGACACTC--TACA-------------TATTCAAGTACCA---GTGATACCTAATTCACTGTTATTT-----G--TT-------GAAACTTAGTGTGTATAA---CATACTA--GTATGTATAGAATAAGTCTTACTGCTA------CATATTGCTCAGGTTTTTCCTTACTT-TA----GATATGTACGT--T-TT-GTACCACACAAACATGTA-------TTTTCGATATTCTCCCAT---ACCCCTATTCCCTCACCC-C---ATCCC-ACTCACCCCATCCCCAAAAATG---ACTAGGATTCAGAACCAACCCAAC-AAATTACTCA-CACTAACTGTACTACTACCCCCTATATGTAAATGT-TTAATTTA-ATGTTTT-ATG-------TTGTTTGACCATGTAT-G-TA--TATGTGCTATTACCTGAGTGAAAAC-AGAGAA---TACTGATAC
gi|10 : aatttctacgtaaatcaagagagttagaaaatgcacaaaaataactTACTTCTA--CCCTATCTGTAAATGT-AAGATATAGATGTTTC-ATGTCTCATGTTGTTTCACCTTGTAC-T-TA--TATGTGATGTTTCCTGAGTCGAAAT-AAAGAC---TACTGACACtgcaaaaaataaaatggatatatctaacacattttt
gi|11 : atgaTATCTGTAAATAT-TAT-TTTA-TTGTTTC-ATACC-CATCTTGTTTTACCATGTAT-T-TACTTAATTG-TATTACCTGATTGAAAAT-AAAGAA---TA-TGAtgtttctacagtgatacaacacaagaagtttatacaa
gi|12 : cgtttttctgatttaataccgtttaaatatttgatcactgAAAGAAAAAAATACTAACCTCGCGATCATTAAACCCAAACCGTTCCACATACATATAT-ACACAAACAATACCGAATTTGTATAGAAACACCTGTA------CTGAattctgaaaaataa
gi|13 : aaatctacaaaacaaaaaagacagaacaaaaaatagtatcgtgcaaTACTA--TCCTAACTCTAAATGA-TTAATTTA-ATGTTTT-ATACCTCATTTTGATTCACCATGTAT-T-TA--AAGGTGATGCTACCATAGTGAAA
gi|14 : actttcattacaaaccaaccaatcaaaaaagttg----TCC-----------TCAAGATAAAA-TACACTTTTTACAACCGACAACAC--AAATAAGCATGCAGTCCGTGATTCAAATA--CCCATTGACGGCCAATTAATGG-----G---------AA----TAATAGCTACACTAGACA
gi|15 : ATGG-TTCGTCGTACGCAATACAAAGAA--AA-TA-TATCCGAGTATCA---GTT-TAGCTAACTTACTTTTAGCT-----GTTTT-------TTTTTTTATCGTTTATTGT--CATA--tttaacaaac
gi|16 : TGCTAGCAGTC--TATAGACAATGTCTCCTTTTA---A--G-------C-----------T--A--TAATAATAGATTTTT-ACAACTGACAATATTGAAATAAGCATGCAGCCTGTtatattgagttagaatat
gi|17 : TAT-T-TA--TATGTTATGTTACCTGAGAGATAAT-GAAGAA---TAGTGACAC
gi|2 : ATGTACCATATATCAAATAAATAGGATAATACTCACCTCACGACCATTAAAT-----CTACTCGACATTTA----T-GCACAAATACTAAAGAATCTGTATA-AAACAACCTTACTCAATCTGACAGATTCAGACATTTAA-A-GAAATAT--ATAAAACTAC-ATTAAAGACCTAA-TTAAATATAATCTAGCCGCTGGTGACATACACTGAAACCGCCGATTCCACGTTTATGCTAGAACTCTATATATATAACGTTCCCCTTCAC--C--GA----TCC-----------TCAAGTTAAAATTACATTTTT-ACAACCGACAATGTTGAAATAAGCATGCATCCCGTGACTCGGATA--CACATTGACGGTCAATGAATGG-----A---------CA----TAACGGCTACACCAGACAATGGGCAGACTTGACTATACCTCTACATAATATTATGGCTTGATAGCCTGCTGCACA---AA--AA----------AATAACAATTCC--TAACTGA-TCA-TG--ATTTAAATGG-TTT-------G---TTCAGTGTTTATAGCCACATG--ATTG--TGCA-AAACT-TTTATTATCTTCATAACTTTATATAGTCCCTATTTCAACGTATTT-CA----AATATGTACTTTC---T-GTGTTACAC--ACATGTA-------TTTTCGCTATTAACGCTTGAAAACA-T-TTCCagatatttattaaaatatgaa
gi|2 : ACTGTTA--CCCTATCTGCAAATGT-AAAAGTAA-ATGTGCT-ATTCCT-ATACTGGTTCACCATGTAT-T-TA--TACGTAATGTTACCTGCGTGCAAATAAAAAAA---TATTGAAACataaaaaaacactgttaccctatctgcaaatgtaaaagtaaatgtgctattcctatactggttcaccatgtatttatacgtaatgttacctgcgtgcaaataaaaaaatattgaaactgagactgtact
gi|20 : atgtaccatatatcaaataaataggataatactcacctcacgaccattaaatctactcgacatttatgcacaaatactaaagaatctgtataaaacaaccttactcaatctgacagattcagacatttaaagaaatatataaaactacattaaagacctaattaaatataatctagccgctggtgacatacactgaaaccgccgattccacgtttatgctagaactctatatatataacgttccccttcaccgatcctcaagttaaaattacatttttacaaccgacaatgttgaaataagcatgcatcccgtgactcggatacacattgacggtcaatgaatggacataacggctacaccagacaatgggcagacttgactatacctctacataatattatggcttgatagcctgctgcacaaaaaaataacaattcctaactgatcatgatttaaatggtttgttcagtgtttatagccacatgattgtgcaaaacttttattatcttcataactttatatagtccctatttcaacgtatttcaaatatgtactttctgtgttacacacatgtattttcgctattaacgcttgaaaacatttccataaaaaaacTTGTTTCACCATGTAT-T-TA--TATGTGATGTTACATGtgagactgtact
gi|3 : ATGTACCTAACATCAAATAAATAAAATAATACTCACCTCGCGATCATTAAATCCAAACC--TCCACATGCATGT-TCAAACCAACAATAAAGACTCTGTATAGAAACAGCCGTA------CTGACA-----------TTGA-ATGAAATTT--ATAAAA--AT-AT-----ACCC-A-CTGAAC---------CCGCTGGT-------------GCC-CC--TT------TTATGCTAGTACAC--TTTATATAACGCCCCCCTTCA---CC-AA----CCC-----------TCAAGTTAAAAATACACTTTT-ACAACCGACAACGTTGAAATAAGCATGCAGCCCGTGATCCAGATA--CCCATTGACGGTCAATGAATGG-----A---------CA----TA------ACATTGAACAA-------ACTTGACTTTACCTCTACATAATATTATGG-TTAATGGCCTGCAAAACA---AA--AATCC-TATCTGAGTATTA---TCGATAACTGACTCTCTGTTATTT-----G-TTT-------GTATTTTAGTGTTTATAGT--CATA--A--G--CGCA-AATTT-ATCCTTATTTTTA------CATATTGCTCCTAGCTCAACTTATGT-TA----AATGTGTATTTTCT-TT-GTGCCACACAAACATGTA-------TTTTCACTATTTACGCGTAAAAACGCT-CTCCCCCACCC-C---AAGCC----------------------G---ACTAAGATTCAAATCAAAACAAACAAAACTGTTCACCATT-ACTGTACTACTA--CCCTATATGTAAATGGAAAAATTTA-ATGTTTT-ATGCCTCATGTTGTTTCACCATGTAT-T-TA--TATGTGATGTTACCTGAGTGAAAAT-AAAGAA---TACTGATAC
gi|4 : cgtcGTAAAGAAACAGCTGTA------CTGAC-------------CAATA-CAAACATTGAAAAAG--AT-AT-----ATAT-AATTAAGT---------TCACT--T-------------AAC-C--------------TGCTGGT-----------------TCCCTTTTTT---G--GACTTGTCG-----------TCAAGTTAAAAATACTCTTTT-TCATCTGACAACATTGAAATAAGCATGCAGCCCGTGATTCAGATA--CCCATTGATGGTCATTGAATGGGAATTA---------CAGCTACACCAG--ACATTAAGCAA-------ACTTGATTTTATGTTCACATTATATTAAGA-TTCATGGCAAACAATACA---AA--AA-A---ATCTAA-T-TTA-----GAAAA-----TCTATGTT--TT-----G-TTT-----------TTTATTATTGATTGC--CATA--T--G--TGTA-AAATT-ATTCTTATTGTCA------TATATTGCTCCTATTTCACCTGATTT-TA----AATATGTAC-------------CACACAAAAATATA-------TATTTG-TA--AAAGCTTGAAAACGCT--TCCCCCACCC-CCTTAAGCCTA--------------------GCTGACTAAAACTCAGAACCAAACAAAC-AAATTGATCACCACT-ACTGTACTACTA--CCCTTACAGTAAATGT-AAAATTTA-ATGTTTT-GTGCCTCATGTTGTTTCACCATGTATATATA--TATGCGATGTTACCTGAGTGAAAAT-A
gi|5 : GACTTTACCTCTACATAATGTTATGG-TTTATGGCCTGCTATACA---AA--AA-CCCTATCTGAGTATTA---TCGATAACTGACTCACTGTTATTT-----G-TTT-------GTATTTTAGTGTTTATAGT--CATA--A--G--TGCA-CATTT-ACTCTTATTTTCA------TATATTGCTCCTAGTTCACCATATTT-TA----AATGTGTTCTTTTT-TTTGTGCCACACAAACATGTAAAATGTATTTTCGCTATTTACGCGTGAAAACGCT-CTTCCCCACCC-C---AAGCC----------------------G---ACTTACATTCAAAACCAAACAAACAAAACTGTTCACCATA-ACTGTACTACCA--ACCTATATGTAAATGT-AAAATTTA-ATGTTTT-ATGCCTCATGTTATTTCACCATGTAT-T-TA--TATGTGATGCAACCTGAGTGAAAAT-AAAGAA---TACTGAc
gi|6 : ATGG-TTCATGGCACGCAATACA---AAGGAA-CC-TAACTAAGTATCA---ACCATAGCTTATTCACTGCTGTTT-----G-TTTTTTAGGAGT-TTTTAACGTTAATTTT--CAAA--T--G--TGTT-AAAAT-ATTCTTCTTGTCA------TATATTGCTCCTTATTCATCTTATTTATACCTTGATGTGTAC---CTATT-GTGCCACACATACATATA-------TATACGCAA---AAGCGTAAAAACGCT-CTCCCCCACCCAC---TAACC----------------------G---ACGAAGATTCAGTACCAAACAAATGAA-TTGTTCTTCACT-ACTTTAATACAAA-TCTTATCTGTAAATGA-AATATTTT-ATTTTTTTATGCCTCATTTTGTTTCACCTTGTAT-T-TA--TATATGTTATTACCTGAGTGAAAAT-GAAGAA---TAaaactgaataatgggtacc
gi|7 : ATAAAGCAATACCCACCTCACGGCAATTAAATCTAAACAATTACGCATGAA----T-ACACAAACCATAAATAACTTGTATAGAAACAGCTGTA------CTGA
gi|8 : tgtcaaccaatcaaatataataccaggacaggaaatgtacgttttgtatacttaatcacctgacagatgagtatcattatttaatagtatgtcccttctttaaaaataaaagaaaacatttgttaccataatattactataaatattcaaataccctgaaatactaacaactgcttacaacaaactcaatttatacaccacaaaaagtcggtacatttgtcaaattactgcccaaatcaataaagaaaatatgcacaacaaaaatacaattcacaatattTATCATATATCAATTACA-AAATCAGTACTCACCTCACTTCCATTAAATCCATTCCATTTCACACGAA----T-ACACAAACAATAAAGAATATGTATAG
gi|9 : tactttttgcgtacacaatgacatgtctgatgagtatcattatttattagtgtcctttctttaaaattgaaagtacccagaatactactataatcatccttatataatcaactgctcaaaacaactcgattaacacaatacaaaaagtaagtacatttgccaaatttgagctcagatcaataaagtaaaaaaatgcacaaaatcaaCAGAACTAAACAAACATACTTATGCAACACT-ACTGTGTCACT---------------ATGT-AAAATTTG-ATGGTTT-ATATCTCATTTT-TTTCATCATGGGT-T-TA--TATATAATGTTACCTGAGTGAATAT-AAAGAACATTAATGACA
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|18 ): TACTATGTCAGTAGAGCTTATACCAGTAAAATGTCACAACAAGATAAGACTTCATATAAA
Unaligned ( gi|19 ): ATTGTAATAGATATTCATATAGCATAGTGTGTTTTTC
Alignments
lowQualScore : 55555 111111 66666666666666666666 11 1 999999999999999999999999999999999999999999999999999999999999999999999 11 77777777777777777777777777 11 22222222222222222 3333333 1111111 2222 2222222 11111 33333333333 111 11111 111111 1111 222222222 2222222 11 111 99999999999999999999999999 1 11
lowQualScore : 0 3 0 1 1 1 44444 6 0 1 0 999999 00000000000000000000 1 33 3 0 111111111111111111111111111111111111111111111111111111111111111111111 2222 11 1 3 3 11111111111111111111111111 1 3 6 2 11 5 8 77777777777777777 2222222 5 1 11 5 0000000 5555 33 0000000 1 5 0 0 0 44444 5 44444444444 1 000 66666 99 6 1 6 1 999999 1 1 6 4444 999999999 1111111 2 999 1 3 00 8 444 77777777777777777777777777 4 3 5 6 00 4 4 4 2 3 3 44 4 777 4
lowQualScore : . . . . . . ..... . . . . ...... .................... . .. . . ..................................................................... .... .. . . . .......................... . . . . .. . . ................. ....... . . .. . ....... .... .. ....... . . . . . ..... . ........... . ... ..... .. . . . . ...... . . . .... ......... ....... . ... . . .. . ... .......................... . . . . .. . . . . . . .. . ... .
lowQualScore : 6 2 7 0 7 0 55555 7 3 0 7 222222 88888888888888888888 2 88 0 0 222222222222222222222222222222222222222222222222222222222222222222222 8888 00 0 8 8 00000000000000000000000000 0 5 7 2 00 0 8 22222222222222222 5555555 7 0 77 4 3333333 9999 11 4444444 7 3 7 1 1 33333 7 66666666666 0 111 77777 22 7 0 7 0 222222 0 0 7 2222 000000000 7777777 5 777 0 7 33 0 000 44444444444444444444444444 7 2 2 7 66 0 0 0 4 3 3 66 0 888 5
consensus : NNNNATGTACCATATATCAAATAAATAAAACAATACTCACCTCGCGACCATTAAATCCAAACCATTCCACATGNA-A---T-ACACAAACAATAAAGAATTTGTATAGAAACAGCCGTA------CTGACA-----------TCGA-A-GAAATAT--ATAAAANT-ATA--------CNCA-TTAAAC---------CCGCTGGT-------------ACC-CC--TT------TTATGCTAGNACTC--TATANATAACGTCCCCCTTCA---C--GA----TCC-----------TCAAGTTAAAAATACACTTTT-ACAACCGACAACGTTGAAATAAGCATGCAGCCCGTGATTCAGATA--CCCATTGACGGTCAATGAATGGAAATAACAGCT-------ACA-------TTAAACAA-------ACTTGACTTTACCTCTACATAATATTATGG-TTNATGGCACGCAATACA---AA--AA-CC-TATCCGAGTATCA---NCGATAACTGACTCACTGTTATTT-----G-TTT-------GTATTTTAGTGTTTATNGT--CATA--A--G--TGCA-AAANT-ATTCTTATTNTCA------TATATTGCTCCTANTTCACCTTATTT-TA----AATGTGTACTTTCT-TT-GTGCCACACAAACATGTA-------TTTTCGCTATTNACGCGTGAAAACGCT-CTCCCCCACCC-C---AAGCC-A--------------------G---ACTAAGATTCAGAACCAAACAAACGAAATTGTTCACCACT-ACTGTACTACTA--CCCTATCTGTAAATGT-AAAATTTA-ATGTTTT-ATGCCTCATNTTGTTTCACCATGTAT-T-TA--TATGTGATGTTACCTGAGTGAAAAT-AAAGAA---TACTGACAC
Reference ( family-2270 ) : NNNNATGTACCATATATCAAATAAATAAAACAATACTCACCTCGCGACCATTAAATCCAAACCATTCCACATGNA-AT--T-ACACAAACAATAAAGAATTTGTATAGAAACAGCCGTA------CTGACA-----------TCGA-A-GAAATAT--ATAAAAAT-ATA--------CNCA-TTAAAC---------CCGCTGGT-------------ACC-CC--TT------TTATGCTAGNACTC--TATANATAACGTCCCCCTTCA---C--GA----TCC-----------TCAAGTTAAAAATACACTTTT-ACAACCGACAACGTTGAAATAAGCATGCAGCCCGTGATTCAGATA--CCCATTGACGGTCAATGAATGGACATANCAGCT-------ACA-------TTAAACAA-------ACTTGACTTTACCTCTACATAATATTATGG-TTNATGGCACGCAATACA---AA--AA-CC-TATCCGAGTATCA---NCGATAACTGACTCACTGTTATTT-----G-TTT-------GTATTTTAGTGTTTATNGT--CATA--A--G--TGCA-AAANT-ATTCTTATTNTCA------TATATTGCTCCTANTTCACCTTATTT-TA----AATGTGTACTTTCT-TT-GTGCCACACAAACATGTA-------TTTTCGCTATTNACGCGTGAAAACGCT-CTCCCCCACCC-C---AAGCC-A--------------------G---ACTAAGATTCAGAACCAAACAAACGAAATTGTTCACCACT-ACTGTACTACTA--CCCTATCTGTAAATGT-AAAATTTA-ATGTTTT-ATGCCTCATNTTGTTTCACCATGTAT-T-TA--TATGTGATGTTACCTGAGTGAAAAT-AAAGAA---TACTGACAC
gi|1 : ATACATAAAACAATATTCACATCAAAATCTATAAATCAGAACCATTTTAAGTGAA-AACAT-ACACAAACAATTAGGAACTTGTATAGAAACATCTGTA------CGGA-------------TCGA-T-GAAATGT--ATAAAACTCAT---------TGCA-GTAAAC---------CCGTCGGT-------------TCC-CC--TT------TT-TGCTGGAACTC--TATAGATAACG-CCCTCTCCAGCGCAGGA----ACCAGTGTAGACGGTTAAGTTACAAATATACTTTA-ACGACCGACAGCCTTAAAATAAACATGCAGCCCATGATACAGATACCCCCATTGACGGTCAATGAATTGAAATACCAGCCATATCAGATA-------TTAAACAA-------ATTTGAATTTACCTCTGCATAATATCATGG-TTGATGACACTC--TACA-------------TATTCAAGTACCA---GTGATACCTAATTCACTGTTATTT-----G--TT-------GAAACTTAGTGTGTATAA---CATACTA--GTATGTATAGAATAAGTCTTACTGCTA------CATATTGCTCAGGTTTTTCCTTACTT-TA----GATATGTACGT--T-TT-GTACCACACAAACATGTA-------TTTTCGATATTCTCCCAT---ACCCCTATTCCCTCACCC-C---ATCCC-ACTCACCCCATCCCCAAAAATG---ACTAGGATTCAGAACCAACCCAAC-AAATTACTCA-CACTAACTGTACTACTACCCCCTATATGTAAATGT-TTAATTTA-ATGTTTT-ATG-------TTGTTTGACCATGTAT-G-TA--TATGTGCTATTACCTGAGTGAAAAC-AGAGAA---TACTGATAC
gi|10 : aatttctacgtaaatcaagagagttagaaaatgcacaaaaataactTACTTCTA--CCCTATCTGTAAATGT-AAGATATAGATGTTTC-ATGTCTCATGTTGTTTCACCTTGTAC-T-TA--TATGTGATGTTTCCTGAGTCGAAAT-AAAGAC---TACTGACACtgcaaaaaataaaatggatatatctaacacattttt
gi|11 : atgaTATCTGTAAATAT-TAT-TTTA-TTGTTTC-ATACC-CATCTTGTTTTACCATGTAT-T-TACTTAATTG-TATTACCTGATTGAAAAT-AAAGAA---TA-TGAtgtttctacagtgatacaacacaagaagtttatacaa
gi|12 : cgtttttctgatttaataccgtttaaatatttgatcactgAAAGAAAAAAATACTAACCTCGCGATCATTAAACCCAAACCGTTCCACATACATATA-T-ACACAAACAATACCGAATTTGTATAGAAACACCTGTA------CTGAattctgaaaaataa
gi|13 : aaatctacaaaacaaaaaagacagaacaaaaaatagtatcgtgcaaTACTA--TCCTAACTCTAAATGA-TTAATTTA-ATGTTTT-ATACCTCATTTTGATTCACCATGTAT-T-TA--AAGGTGATGCTACCATAGTGAAA
gi|14 : actttcattacaaaccaaccaatcaaaaaagttg----TCC-----------TCAAGATAAAA-TACACTTTTTACAACCGACAACAC--AAATAAGCATGCAGTCCGTGATTCAAATA--CCCATTGACGGCCAATTAATGGGAATAATAGCT-------ACA-------CTAGACA
gi|15 : ATGG-TTCGTCGTACGCAATACAAAGAA--AA-TA-TATCCGAGTATCA---GTT-TAGCTAACTTACTTTTAGCT-----GTTTT-------TTTTTTTATCGTTTATTGT--CATA--tttaacaaac
gi|16 : TGCTAGCAGTC--TATAGACAATGTCTCCTTTTA---A--G-------C-----------T--A--TAATAATAGATTTTT-ACAACTGACAATATTGAAATAAGCATGCAGCCTGTtatattgagttagaatat
gi|17 : TAT-T-TA--TATGTTATGTTACCTGAGAGATAAT-GAAGAA---TAGTGACAC
gi|2 : ATGTACCATATATCAAATAAATAGGATAATACTCACCTCACGACCATTAAAT-----CTACTCGACATTTA-----T-GCACAAATACTAAAGAATCTGTATA-AAACAACCTTACTCAATCTGACAGATTCAGACATTTAA-A-GAAATAT--ATAAAACT-ACATTAAAGACCTAA-TTAAATATAATCTAGCCGCTGGTGACATACACTGAAACCGCCGATTCCACGTTTATGCTAGAACTCTATATATATAACGTTCCCCTTCAC--C--GA----TCC-----------TCAAGTTAAAATTACATTTTT-ACAACCGACAATGTTGAAATAAGCATGCATCCCGTGACTCGGATA--CACATTGACGGTCAATGAATGGACATAACGGCT-------ACA-------CCAGACAATGGGCAGACTTGACTATACCTCTACATAATATTATGGCTTGATAGCCTGCTGCACA---AA--AA----------AATAACAATTCC--TAACTGA-TCA-TG--ATTTAAATGG-TTT-------G---TTCAGTGTTTATAGCCACATG--ATTG--TGCA-AAACT-TTTATTATCTTCATAACTTTATATAGTCCCTATTTCAACGTATTT-CA----AATATGTACTTTC---T-GTGTTACAC--ACATGTA-------TTTTCGCTATTAACGCTTGAAAACA-T-TTCCagatatttattaaaatatgaa
gi|2 : ACTGTTA--CCCTATCTGCAAATGT-AAAAGTAA-ATGTGCT-ATTCCT-ATACTGGTTCACCATGTAT-T-TA--TACGTAATGTTACCTGCGTGCAAATAAAAAAA---TATTGAAACataaaaaaacactgttaccctatctgcaaatgtaaaagtaaatgtgctattcctatactggttcaccatgtatttatacgtaatgttacctgcgtgcaaataaaaaaatattgaaactgagactgtact
gi|20 : atgtaccatatatcaaataaataggataatactcacctcacgaccattaaatctactcgacatttatgcacaaatactaaagaatctgtataaaacaaccttactcaatctgacagattcagacatttaaagaaatatataaaactacattaaagacctaattaaatataatctagccgctggtgacatacactgaaaccgccgattccacgtttatgctagaactctatatatataacgttccccttcaccgatcctcaagttaaaattacatttttacaaccgacaatgttgaaataagcatgcatcccgtgactcggatacacattgacggtcaatgaatggacataacggctacaccagacaatgggcagacttgactatacctctacataatattatggcttgatagcctgctgcacaaaaaaataacaattcctaactgatcatgatttaaatggtttgttcagtgtttatagccacatgattgtgcaaaacttttattatcttcataactttatatagtccctatttcaacgtatttcaaatatgtactttctgtgttacacacatgtattttcgctattaacgcttgaaaacatttccataaaaaaacTTGTTTCACCATGTAT-T-TA--TATGTGATGTTACATGtgagactgtact
gi|3 : ATGTACCTAACATCAAATAAATAAAATAATACTCACCTCGCGATCATTAAATCCAAACC--TCCACATGCATGT--TCAAACCAACAATAAAGACTCTGTATAGAAACAGCCGTA------CTGACA-----------TTGA-ATGAAATTT--ATAAAAAT-ATA--------CCCA-CTGAAC---------CCGCTGGT-------------GCC-CC--TT------TTATGCTAGTACAC--TTTATATAACGCCCCCCTTCA---CC-AA----CCC-----------TCAAGTTAAAAATACACTTTT-ACAACCGACAACGTTGAAATAAGCATGCAGCCCGTGATCCAGATA--CCCATTGACGGTCAATGAATGGACATA-------------ACA-------TTGAACAA-------ACTTGACTTTACCTCTACATAATATTATGG-TTAATGGCCTGCAAAACA---AA--AATCC-TATCTGAGTATTA---TCGATAACTGACTCTCTGTTATTT-----G-TTT-------GTATTTTAGTGTTTATAGT--CATA--A--G--CGCA-AATTT-ATCCTTATTTTTA------CATATTGCTCCTAGCTCAACTTATGT-TA----AATGTGTATTTTCT-TT-GTGCCACACAAACATGTA-------TTTTCACTATTTACGCGTAAAAACGCT-CTCCCCCACCC-C---AAGCC----------------------G---ACTAAGATTCAAATCAAAACAAACAAAACTGTTCACCATT-ACTGTACTACTA--CCCTATATGTAAATGGAAAAATTTA-ATGTTTT-ATGCCTCATGTTGTTTCACCATGTAT-T-TA--TATGTGATGTTACCTGAGTGAAAAT-AAAGAA---TACTGATAC
gi|4 : cgtcGTAAAGAAACAGCTGTA------CTGAC-------------CAATA-CAAACATTGAAAAAGAT-ATA--------TATAATTAAGT---------TCACT--T-------------AAC-C--------------TGCTGGT-----------------TCCCTTTTTT---G--GACTTGTCG-----------TCAAGTTAAAAATACTCTTTT-TCATCTGACAACATTGAAATAAGCATGCAGCCCGTGATTCAGATA--CCCATTGATGGTCATTGAATGGGAATTACAGCT-------ACACCAGACATTAAGCAA-------ACTTGATTTTATGTTCACATTATATTAAGA-TTCATGGCAAACAATACA---AA--AA-A---ATCTAA-T-TTA-----GAAAA-----TCTATGTT--TT-----G-TTT-----------TTTATTATTGATTGC--CATA--T--G--TGTA-AAATT-ATTCTTATTGTCA------TATATTGCTCCTATTTCACCTGATTT-TA----AATATGTAC-------------CACACAAAAATATA-------TATTTG-TA--AAAGCTTGAAAACGCT--TCCCCCACCC-CCTTAAGCCTA--------------------GCTGACTAAAACTCAGAACCAAACAAAC-AAATTGATCACCACT-ACTGTACTACTA--CCCTTACAGTAAATGT-AAAATTTA-ATGTTTT-GTGCCTCATGTTGTTTCACCATGTATATATA--TATGCGATGTTACCTGAGTGAAAAT-A
gi|5 : GACTTTACCTCTACATAATGTTATGG-TTTATGGCCTGCTATACA---AA--AA-CCCTATCTGAGTATTA---TCGATAACTGACTCACTGTTATTT-----G-TTT-------GTATTTTAGTGTTTATAGT--CATA--A--G--TGCA-CATTT-ACTCTTATTTTCA------TATATTGCTCCTAGTTCACCATATTT-TA----AATGTGTTCTTTTT-TTTGTGCCACACAAACATGTAAAATGTATTTTCGCTATTTACGCGTGAAAACGCT-CTTCCCCACCC-C---AAGCC----------------------G---ACTTACATTCAAAACCAAACAAACAAAACTGTTCACCATA-ACTGTACTACCA--ACCTATATGTAAATGT-AAAATTTA-ATGTTTT-ATGCCTCATGTTATTTCACCATGTAT-T-TA--TATGTGATGCAACCTGAGTGAAAAT-AAAGAA---TACTGAc
gi|6 : ATGG-TTCATGGCACGCAATACA---AAGGAA-CC-TAACTAAGTATCA---ACCATAGCTTATTCACTGCTGTTT-----G-TTTTTTAGGAGT-TTTTAACGTTAATTTT--CAAA--T--G--TGTT-AAAAT-ATTCTTCTTGTCA------TATATTGCTCCTTATTCATCTTATTTATACCTTGATGTGTAC---CTATT-GTGCCACACATACATATA-------TATACGCAA---AAGCGTAAAAACGCT-CTCCCCCACCCAC---TAACC----------------------G---ACGAAGATTCAGTACCAAACAAATGAA-TTGTTCTTCACT-ACTTTAATACAAA-TCTTATCTGTAAATGA-AATATTTT-ATTTTTTTATGCCTCATTTTGTTTCACCTTGTAT-T-TA--TATATGTTATTACCTGAGTGAAAAT-GAAGAA---TAaaactgaataatgggtacc
gi|7 : ATAAAGCAATACCCACCTCACGGCAATTAAATCTAAACAATTACGCATGAA-----T-ACACAAACCATAAATAACTTGTATAGAAACAGCTGTA------CTGA
gi|8 : tgtcaaccaatcaaatataataccaggacaggaaatgtacgttttgtatacttaatcacctgacagatgagtatcattatttaatagtatgtcccttctttaaaaataaaagaaaacatttgttaccataatattactataaatattcaaataccctgaaatactaacaactgcttacaacaaactcaatttatacaccacaaaaagtcggtacatttgtcaaattactgcccaaatcaataaagaaaatatgcacaacaaaaatacaattcacaatattTATCATATATCAATTACA-AAATCAGTACTCACCTCACTTCCATTAAATCCATTCCATTTCACACGAA-----T-ACACAAACAATAAAGAATATGTATAG
gi|9 : tactttttgcgtacacaatgacatgtctgatgagtatcattatttattagtgtcctttctttaaaattgaaagtacccagaatactactataatcatccttatataatcaactgctcaaaacaactcgattaacacaatacaaaaagtaagtacatttgccaaatttgagctcagatcaataaagtaaaaaaatgcacaaaatcaaCAGAACTAAACAAACATACTTATGCAACACT-ACTGTGTCACT---------------ATGT-AAAATTTG-ATGGTTT-ATATCTCATTTT-TTTCATCATGGGT-T-TA--TATATAATGTTACCTGAGTGAATAT-AAAGAACATTAATGACA
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|18 ): TACTATGTCAGTAGAGCTTATACCAGTAAAATGTCACAACAAGATAAGACTTCATATAAA
Unaligned ( gi|19 ): ATTGTAATAGATATTCATATAGCATAGTGTGTTTTTC
Alignments
lowQualScore : 333333333333 111111 66666666666666666666 11 1 999999999999999999999999999999999999999999999999999999999999999999999 11 77777777777777777777777777 11 44444444444444444 3333333 1111111 2222 2222222 11111 33333333333 111 11111 111111 1111 222222222 2222222 11 111 99999999999999999999999999 1 11
lowQualScore : 0 3 0 1 1 666666666666 0 1 0 999999 00000000000000000000 1 33 1 0 111111111111111111111111111111111111111111111111111111111111111111111 2222 11 1 3 3 11111111111111111111111111 1 3 6 2 11 0 11111111111111111 2222222 5 1 11 5 0000000 5555 33 0000000 1 5 0 0 0 44444 5 44444444444 1 000 66666 99 6 1 6 1 999999 1 1 6 4444 999999999 1111111 2 999 1 3 00 8 444 77777777777777777777777777 4 3 5 6 00 4 4 4 2 3 3 44 4 777 4
lowQualScore : . . . . . ............ . . . ...... .................... . .. . . ..................................................................... .... .. . . . .......................... . . . . .. . ................. ....... . . .. . ....... .... .. ....... . . . . . ..... . ........... . ... ..... .. . . . . ...... . . . .... ......... ....... . ... . . .. . ... .......................... . . . . .. . . . . . . .. . ... .
lowQualScore : 6 2 7 0 7 888888888888 3 0 7 222222 88888888888888888888 2 88 0 0 222222222222222222222222222222222222222222222222222222222222222222222 8888 00 0 8 8 00000000000000000000000000 0 5 7 2 00 6 88888888888888888 5555555 7 0 77 4 3333333 9999 11 4444444 7 3 7 1 1 33333 7 66666666666 0 111 77777 22 7 0 7 0 222222 0 0 7 2222 000000000 7777777 5 777 0 7 33 0 000 44444444444444444444444444 7 2 2 7 66 0 0 0 4 3 3 66 0 888 5
consensus : NNNNATGTACCATATATCAAATAAATAAAACAATACTCACCTCGCGACCATTAAATCCAAACCATTCCACATGCA---A---T--ACACAAACAATAAAGAATTTGTATAGAAACAGCCGTA------CTGACA-----------TCGA-A-GAAATAT--ATAAAANT-ATA--------CNCA-TTAAAC---------CCGCTGGT-------------ACC-CC--TT------TTATGCTAGNACTC--TATANATAACGTCCCCCTTCA---C--GA----TCC-----------TCAAGTTAAAAATACACTTTT-ACAACCGACAACGTTGAAATAAGCATGCAGCCCGTGATTCAGATA--CCCATTGACGGTCAATGAATGGAAATAACAGCT-------ACA-------TTAAACAA-------ACTTGACTTTACCTCTACATAATATTATGG-TTNATGGCACGCAATACA---AA--AA-CC-TATCCGAGTATCA---NCGATAACTGACTCACTGTTATTT-----G-TTT-------GTATTTTAGTGTTTATNGT--CATA--A--G--TGCA-AAANT-ATTCTTATTNTCA------TATATTGCTCCTANTTCACCTTATTT-TA----AATGTGTACTTTCT-TT-GTGCCACACAAACATGTA-------TTTTCGCTATTNACGCGTGAAAACGCT-CTCCCCCACCC-C---AAGCC-A--------------------G---ACTAAGATTCAGAACCAAACAAACGAAATTGTTCACCACT-ACTGTACTACTA--CCCTATCTGTAAATGT-AAAATTTA-ATGTTTT-ATGCCTCATNTTGTTTCACCATGTAT-T-TA--TATGTGATGTTACCTGAGTGAAAAT-AAAGAA---TACTGACAC
Reference ( family-2270 ) : NNNNATGTACCATATATCAAATAAATAAAACAATACTCACCTCGCGACCATTAAATCCAAACCATTCCACATGNA---A---T--ACACAAACAATAAAGAATTTGTATAGAAACAGCCGTA------CTGACA-----------TCGA-A-GAAATAT--ATAAAANT-ATA--------CNCA-TTAAAC---------CCGCTGGT-------------ACC-CC--TT------TTATGCTAGNACTC--TATANATAACGTCCCCCTTCA---C--GA----TCC-----------TCAAGTTAAAAATACACTTTT-ACAACCGACAACGTTGAAATAAGCATGCAGCCCGTGATTCAGATA--CCCATTGACGGTCAATGAATGGAAATAACAGCT-------ACA-------TTAAACAA-------ACTTGACTTTACCTCTACATAATATTATGG-TTNATGGCACGCAATACA---AA--AA-CC-TATCCGAGTATCA---NCGATAACTGACTCACTGTTATTT-----G-TTT-------GTATTTTAGTGTTTATNGT--CATA--A--G--TGCA-AAANT-ATTCTTATTNTCA------TATATTGCTCCTANTTCACCTTATTT-TA----AATGTGTACTTTCT-TT-GTGCCACACAAACATGTA-------TTTTCGCTATTNACGCGTGAAAACGCT-CTCCCCCACCC-C---AAGCC-A--------------------G---ACTAAGATTCAGAACCAAACAAACGAAATTGTTCACCACT-ACTGTACTACTA--CCCTATCTGTAAATGT-AAAATTTA-ATGTTTT-ATGCCTCATNTTGTTTCACCATGTAT-T-TA--TATGTGATGTTACCTGAGTGAAAAT-AAAGAA---TACTGACAC
gi|1 : ATACATAAAACAATATTCACATCAAAATCTATAAATCAGAACCATTTTAAGTGAA---AACAT--ACACAAACAATTAGGAACTTGTATAGAAACATCTGTA------CGGA-------------TCGA-T-GAAATGT--ATAAAACTCAT---------TGCA-GTAAAC---------CCGTCGGT-------------TCC-CC--TT------TT-TGCTGGAACTC--TATAGATAACG-CCCTCTCCAGCGCAGGA----ACCAGTGTAGACGGTTAAGTTACAAATATACTTTA-ACGACCGACAGCCTTAAAATAAACATGCAGCCCATGATACAGATACCCCCATTGACGGTCAATGAATTGAAATACCAGCCATATCAGATA-------TTAAACAA-------ATTTGAATTTACCTCTGCATAATATCATGG-TTGATGACACTC--TACA-------------TATTCAAGTACCA---GTGATACCTAATTCACTGTTATTT-----G--TT-------GAAACTTAGTGTGTATAA---CATACTA--GTATGTATAGAATAAGTCTTACTGCTA------CATATTGCTCAGGTTTTTCCTTACTT-TA----GATATGTACGT--T-TT-GTACCACACAAACATGTA-------TTTTCGATATTCTCCCAT---ACCCCTATTCCCTCACCC-C---ATCCC-ACTCACCCCATCCCCAAAAATG---ACTAGGATTCAGAACCAACCCAAC-AAATTACTCA-CACTAACTGTACTACTACCCCCTATATGTAAATGT-TTAATTTA-ATGTTTT-ATG-------TTGTTTGACCATGTAT-G-TA--TATGTGCTATTACCTGAGTGAAAAC-AGAGAA---TACTGATAC
gi|10 : aatttctacgtaaatcaagagagttagaaaatgcacaaaaataactTACTTCTA--CCCTATCTGTAAATGT-AAGATATAGATGTTTC-ATGTCTCATGTTGTTTCACCTTGTAC-T-TA--TATGTGATGTTTCCTGAGTCGAAAT-AAAGAC---TACTGACACtgcaaaaaataaaatggatatatctaacacattttt
gi|11 : atgaTATCTGTAAATAT-TAT-TTTA-TTGTTTC-ATACC-CATCTTGTTTTACCATGTAT-T-TACTTAATTG-TATTACCTGATTGAAAAT-AAAGAA---TA-TGAtgtttctacagtgatacaacacaagaagtttatacaa
gi|12 : cgtttttctgatttaataccgtttaaatatttgatcactgAAAGAAAAAAATACTAACCTCGCGATCATTAAACCCAAACCGTTCCACATACATATA---T--ACACAAACAATACCGAATTTGTATAGAAACACCTGTA------CTGAattctgaaaaataa
gi|13 : aaatctacaaaacaaaaaagacagaacaaaaaatagtatcgtgcaaTACTA--TCCTAACTCTAAATGA-TTAATTTA-ATGTTTT-ATACCTCATTTTGATTCACCATGTAT-T-TA--AAGGTGATGCTACCATAGTGAAA
gi|14 : actttcattacaaaccaaccaatcaaaaaagttg----TCC-----------TCAAGATAAAA-TACACTTTTTACAACCGACAACAC--AAATAAGCATGCAGTCCGTGATTCAAATA--CCCATTGACGGCCAATTAATGGGAATAATAGCT-------ACA-------CTAGACA
gi|15 : ATGG-TTCGTCGTACGCAATACAAAGAA--AA-TA-TATCCGAGTATCA---GTT-TAGCTAACTTACTTTTAGCT-----GTTTT-------TTTTTTTATCGTTTATTGT--CATA--tttaacaaac
gi|16 : TGCTAGCAGTC--TATAGACAATGTCTCCTTTTA---A--G-------C-----------T--A--TAATAATAGATTTTT-ACAACTGACAATATTGAAATAAGCATGCAGCCTGTtatattgagttagaatat
gi|17 : TAT-T-TA--TATGTTATGTTACCTGAGAGATAAT-GAAGAA---TAGTGACAC
gi|2 : ATGTACCATATATCAAATAAATAGGATAATACTCACCTCACGACCATTAAAT-----CTACTCGACATTT----A---T--GCACAAATACTAAAGAATCTGTATA-AAACAACCTTACTCAATCTGACAGATTCAGACATTTAA-A-GAAATAT--ATAAAACT-ACATTAAAGACCTAA-TTAAATATAATCTAGCCGCTGGTGACATACACTGAAACCGCCGATTCCACGTTTATGCTAGAACTCTATATATATAACGTTCCCCTTCAC--C--GA----TCC-----------TCAAGTTAAAATTACATTTTT-ACAACCGACAATGTTGAAATAAGCATGCATCCCGTGACTCGGATA--CACATTGACGGTCAATGAATGGACATAACGGCT-------ACA-------CCAGACAATGGGCAGACTTGACTATACCTCTACATAATATTATGGCTTGATAGCCTGCTGCACA---AA--AA----------AATAACAATTCC--TAACTGA-TCA-TG--ATTTAAATGG-TTT-------G---TTCAGTGTTTATAGCCACATG--ATTG--TGCA-AAACT-TTTATTATCTTCATAACTTTATATAGTCCCTATTTCAACGTATTT-CA----AATATGTACTTTC---T-GTGTTACAC--ACATGTA-------TTTTCGCTATTAACGCTTGAAAACA-T-TTCCagatatttattaaaatatgaa
gi|2 : ACTGTTA--CCCTATCTGCAAATGT-AAAAGTAA-ATGTGCT-ATTCCT-ATACTGGTTCACCATGTAT-T-TA--TACGTAATGTTACCTGCGTGCAAATAAAAAAA---TATTGAAACataaaaaaacactgttaccctatctgcaaatgtaaaagtaaatgtgctattcctatactggttcaccatgtatttatacgtaatgttacctgcgtgcaaataaaaaaatattgaaactgagactgtact
gi|20 : atgtaccatatatcaaataaataggataatactcacctcacgaccattaaatctactcgacatttatgcacaaatactaaagaatctgtataaaacaaccttactcaatctgacagattcagacatttaaagaaatatataaaactacattaaagacctaattaaatataatctagccgctggtgacatacactgaaaccgccgattccacgtttatgctagaactctatatatataacgttccccttcaccgatcctcaagttaaaattacatttttacaaccgacaatgttgaaataagcatgcatcccgtgactcggatacacattgacggtcaatgaatggacataacggctacaccagacaatgggcagacttgactatacctctacataatattatggcttgatagcctgctgcacaaaaaaataacaattcctaactgatcatgatttaaatggtttgttcagtgtttatagccacatgattgtgcaaaacttttattatcttcataactttatatagtccctatttcaacgtatttcaaatatgtactttctgtgttacacacatgtattttcgctattaacgcttgaaaacatttccataaaaaaacTTGTTTCACCATGTAT-T-TA--TATGTGATGTTACATGtgagactgtact
gi|3 : ATGTACCTAACATCAAATAAATAAAATAATACTCACCTCGCGATCATTAAATCCAAACC--TCCACATGCAT--G---TTCAAACCAACAATAAAGACTCTGTATAGAAACAGCCGTA------CTGACA-----------TTGA-ATGAAATTT--ATAAAAAT-ATA--------CCCA-CTGAAC---------CCGCTGGT-------------GCC-CC--TT------TTATGCTAGTACAC--TTTATATAACGCCCCCCTTCA---CC-AA----CCC-----------TCAAGTTAAAAATACACTTTT-ACAACCGACAACGTTGAAATAAGCATGCAGCCCGTGATCCAGATA--CCCATTGACGGTCAATGAATGGACATAACA--------------------TTGAACAA-------ACTTGACTTTACCTCTACATAATATTATGG-TTAATGGCCTGCAAAACA---AA--AATCC-TATCTGAGTATTA---TCGATAACTGACTCTCTGTTATTT-----G-TTT-------GTATTTTAGTGTTTATAGT--CATA--A--G--CGCA-AATTT-ATCCTTATTTTTA------CATATTGCTCCTAGCTCAACTTATGT-TA----AATGTGTATTTTCT-TT-GTGCCACACAAACATGTA-------TTTTCACTATTTACGCGTAAAAACGCT-CTCCCCCACCC-C---AAGCC----------------------G---ACTAAGATTCAAATCAAAACAAACAAAACTGTTCACCATT-ACTGTACTACTA--CCCTATATGTAAATGGAAAAATTTA-ATGTTTT-ATGCCTCATGTTGTTTCACCATGTAT-T-TA--TATGTGATGTTACCTGAGTGAAAAT-AAAGAA---TACTGATAC
gi|4 : cgtcGTAAAGAAACAGCTGTA------CTGAC-------------CAATA-CAAACATTGAAAAAGAT-ATA--------TATAATTAAGT---------TCACT--T-------------AAC-C--------------TGCTGGT-----------------TCCCTTTTTT---G--GACTTGTCG-----------TCAAGTTAAAAATACTCTTTT-TCATCTGACAACATTGAAATAAGCATGCAGCCCGTGATTCAGATA--CCCATTGATGGTCATTGAATGGGAATTACAGCT-------ACACCAGACATTAAGCAA-------ACTTGATTTTATGTTCACATTATATTAAGA-TTCATGGCAAACAATACA---AA--AA-A---ATCTAA-T-TTA-----GAAAA-----TCTATGTT--TT-----G-TTT-----------TTTATTATTGATTGC--CATA--T--G--TGTA-AAATT-ATTCTTATTGTCA------TATATTGCTCCTATTTCACCTGATTT-TA----AATATGTAC-------------CACACAAAAATATA-------TATTTG-TA--AAAGCTTGAAAACGCT--TCCCCCACCC-CCTTAAGCCTA--------------------GCTGACTAAAACTCAGAACCAAACAAAC-AAATTGATCACCACT-ACTGTACTACTA--CCCTTACAGTAAATGT-AAAATTTA-ATGTTTT-GTGCCTCATGTTGTTTCACCATGTATATATA--TATGCGATGTTACCTGAGTGAAAAT-A
gi|5 : GACTTTACCTCTACATAATGTTATGG-TTTATGGCCTGCTATACA---AA--AA-CCCTATCTGAGTATTA---TCGATAACTGACTCACTGTTATTT-----G-TTT-------GTATTTTAGTGTTTATAGT--CATA--A--G--TGCA-CATTT-ACTCTTATTTTCA------TATATTGCTCCTAGTTCACCATATTT-TA----AATGTGTTCTTTTT-TTTGTGCCACACAAACATGTAAAATGTATTTTCGCTATTTACGCGTGAAAACGCT-CTTCCCCACCC-C---AAGCC----------------------G---ACTTACATTCAAAACCAAACAAACAAAACTGTTCACCATA-ACTGTACTACCA--ACCTATATGTAAATGT-AAAATTTA-ATGTTTT-ATGCCTCATGTTATTTCACCATGTAT-T-TA--TATGTGATGCAACCTGAGTGAAAAT-AAAGAA---TACTGAc
gi|6 : ATGG-TTCATGGCACGCAATACA---AAGGAA-CC-TAACTAAGTATCA---ACCATAGCTTATTCACTGCTGTTT-----G-TTTTTTAGGAGT-TTTTAACGTTAATTTT--CAAA--T--G--TGTT-AAAAT-ATTCTTCTTGTCA------TATATTGCTCCTTATTCATCTTATTTATACCTTGATGTGTAC---CTATT-GTGCCACACATACATATA-------TATACGCAA---AAGCGTAAAAACGCT-CTCCCCCACCCAC---TAACC----------------------G---ACGAAGATTCAGTACCAAACAAATGAA-TTGTTCTTCACT-ACTTTAATACAAA-TCTTATCTGTAAATGA-AATATTTT-ATTTTTTTATGCCTCATTTTGTTTCACCTTGTAT-T-TA--TATATGTTATTACCTGAGTGAAAAT-GAAGAA---TAaaactgaataatgggtacc
gi|7 : ATAAAGCAATACCCACCTCACGGCAATTAAATCTAAACAATTACGCATG-A---A---T--ACACAAACCATAAATAACTTGTATAGAAACAGCTGTA------CTGA
gi|8 : tgtcaaccaatcaaatataataccaggacaggaaatgtacgttttgtatacttaatcacctgacagatgagtatcattatttaatagtatgtcccttctttaaaaataaaagaaaacatttgttaccataatattactataaatattcaaataccctgaaatactaacaactgcttacaacaaactcaatttatacaccacaaaaagtcggtacatttgtcaaattactgcccaaatcaataaagaaaatatgcacaacaaaaatacaattcacaatattTATCATATATCAATTACA-AAATCAGTACTCACCTCACTTCCATTAAATCCATTCCATTTCACACG-A---A---T--ACACAAACAATAAAGAATATGTATAG
gi|9 : tactttttgcgtacacaatgacatgtctgatgagtatcattatttattagtgtcctttctttaaaattgaaagtacccagaatactactataatcatccttatataatcaactgctcaaaacaactcgattaacacaatacaaaaagtaagtacatttgccaaatttgagctcagatcaataaagtaaaaaaatgcacaaaatcaaCAGAACTAAACAAACATACTTATGCAACACT-ACTGTGTCACT---------------ATGT-AAAATTTG-ATGGTTT-ATATCTCATTTT-TTTCATCATGGGT-T-TA--TATATAATGTTACCTGAGTGAATAT-AAAGAACATTAATGACA
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|18 ): TACTATGTCAGTAGAGCTTATACCAGTAAAATGTCACAACAAGATAAGACTTCATATAAA
Unaligned ( gi|19 ): ATTGTAATAGATATTCATATAGCATAGTGTGTTTTTC
Alignments
lowQualScore : 333333333333 111111 66666666666666666666 11 1 999999999999999999999999999999999999999999999999999999999999999999999 11 77777777777777777777777777 11 44444444444444444 3333333 1111111 2222 2222222 11111 33333333333 111 11111 111111 1111 222222222 2222222 11 111 99999999999999999999999999 1 11
lowQualScore : 0 3 0 1 1 666666666666 0 1 0 999999 00000000000000000000 1 33 1 0 111111111111111111111111111111111111111111111111111111111111111111111 2222 11 1 3 3 11111111111111111111111111 1 3 6 2 11 0 11111111111111111 2222222 5 1 11 5 0000000 5555 33 0000000 1 5 0 0 0 44444 5 44444444444 1 000 66666 99 6 1 6 1 999999 1 1 6 4444 999999999 1111111 2 999 1 3 00 8 444 77777777777777777777777777 4 3 5 6 00 4 4 4 2 3 3 44 4 777 4
lowQualScore : . . . . . ............ . . . ...... .................... . .. . . ..................................................................... .... .. . . . .......................... . . . . .. . ................. ....... . . .. . ....... .... .. ....... . . . . . ..... . ........... . ... ..... .. . . . . ...... . . . .... ......... ....... . ... . . .. . ... .......................... . . . . .. . . . . . . .. . ... .
lowQualScore : 6 2 7 0 7 333333333333 3 0 7 222222 88888888888888888888 2 88 0 0 222222222222222222222222222222222222222222222222222222222222222222222 8888 00 0 8 8 00000000000000000000000000 0 5 7 2 00 6 88888888888888888 5555555 7 0 77 4 3333333 9999 11 4444444 7 3 7 1 1 33333 7 66666666666 0 111 77777 22 7 0 7 0 222222 0 0 7 2222 000000000 7777777 5 777 0 7 33 0 000 44444444444444444444444444 7 2 2 7 66 0 0 0 4 3 3 66 0 888 5
consensus : NNNNATGTACCATATATCAAATAAATAAAACAATACTCACCTCGCGACCATTAAATCCAAACCATTCCACATGCA---A---T--ACACAAACAATAAAGAATTTGTATAGAAACAGCCGTA------CTGACA-----------TCGA-A-GAAATAT--ATAAAANT-ATA--------CNCA-TTAAAC---------CCGCTGGT-------------ACC-CC--TT------TTATGCTAGNACTC--TATANATAACGTCCCCCTTCA---C--GA----TCC-----------TCAAGTTAAAAATACACTTTT-ACAACCGACAACGTTGAAATAAGCATGCAGCCCGTGATTCAGATA--CCCATTGACGGTCAATGAATGGAAATAACAGCT-------ACA-------TTAAACAA-------ACTTGACTTTACCTCTACATAATATTATGG-TTNATGGCACGCAATACA---AA--AA-CC-TATCCGAGTATCA---NCGATAACTGACTCACTGTTATTT-----G-TTT-------GTATTTTAGTGTTTATNGT--CATA--A--G--TGCA-AAANT-ATTCTTATTNTCA------TATATTGCTCCTANTTCACCTTATTT-TA----AATGTGTACTTTCT-TT-GTGCCACACAAACATGTA-------TTTTCGCTATTNACGCGTGAAAACGCT-CTCCCCCACCC-C---AAGCC-A--------------------G---ACTAAGATTCAGAACCAAACAAACGAAATTGTTCACCACT-ACTGTACTACTA--CCCTATCTGTAAATGT-AAAATTTA-ATGTTTT-ATGCCTCATNTTGTTTCACCATGTAT-T-TA--TATGTGATGTTACCTGAGTGAAAAT-AAAGAA---TACTGACAC
Reference ( family-2270 ) : NNNNATGTACCATATATCAAATAAATAAAACAATACTCACCTCGCGACCATTAAATCCAAACCATTCCACATGCA---A---T--ACACAAACAATAAAGAATTTGTATAGAAACAGCCGTA------CTGACA-----------TCGA-A-GAAATAT--ATAAAANT-ATA--------CNCA-TTAAAC---------CCGCTGGT-------------ACC-CC--TT------TTATGCTAGNACTC--TATANATAACGTCCCCCTTCA---C--GA----TCC-----------TCAAGTTAAAAATACACTTTT-ACAACCGACAACGTTGAAATAAGCATGCAGCCCGTGATTCAGATA--CCCATTGACGGTCAATGAATGGAAATAACAGCT-------ACA-------TTAAACAA-------ACTTGACTTTACCTCTACATAATATTATGG-TTNATGGCACGCAATACA---AA--AA-CC-TATCCGAGTATCA---NCGATAACTGACTCACTGTTATTT-----G-TTT-------GTATTTTAGTGTTTATNGT--CATA--A--G--TGCA-AAANT-ATTCTTATTNTCA------TATATTGCTCCTANTTCACCTTATTT-TA----AATGTGTACTTTCT-TT-GTGCCACACAAACATGTA-------TTTTCGCTATTNACGCGTGAAAACGCT-CTCCCCCACCC-C---AAGCC-A--------------------G---ACTAAGATTCAGAACCAAACAAACGAAATTGTTCACCACT-ACTGTACTACTA--CCCTATCTGTAAATGT-AAAATTTA-ATGTTTT-ATGCCTCATNTTGTTTCACCATGTAT-T-TA--TATGTGATGTTACCTGAGTGAAAAT-AAAGAA---TACTGACAC
gi|1 : ATACATAAAACAATATTCACATCAAAATCTATAAATCAGAACCATTTTAAGTGAA---AACAT--ACACAAACAATTAGGAACTTGTATAGAAACATCTGTA------CGGA-------------TCGA-T-GAAATGT--ATAAAACTCAT---------TGCA-GTAAAC---------CCGTCGGT-------------TCC-CC--TT------TT-TGCTGGAACTC--TATAGATAACG-CCCTCTCCAGCGCAGGA----ACCAGTGTAGACGGTTAAGTTACAAATATACTTTA-ACGACCGACAGCCTTAAAATAAACATGCAGCCCATGATACAGATACCCCCATTGACGGTCAATGAATTGAAATACCAGCCATATCAGATA-------TTAAACAA-------ATTTGAATTTACCTCTGCATAATATCATGG-TTGATGACACTC--TACA-------------TATTCAAGTACCA---GTGATACCTAATTCACTGTTATTT-----G--TT-------GAAACTTAGTGTGTATAA---CATACTA--GTATGTATAGAATAAGTCTTACTGCTA------CATATTGCTCAGGTTTTTCCTTACTT-TA----GATATGTACGT--T-TT-GTACCACACAAACATGTA-------TTTTCGATATTCTCCCAT---ACCCCTATTCCCTCACCC-C---ATCCC-ACTCACCCCATCCCCAAAAATG---ACTAGGATTCAGAACCAACCCAAC-AAATTACTCA-CACTAACTGTACTACTACCCCCTATATGTAAATGT-TTAATTTA-ATGTTTT-ATG-------TTGTTTGACCATGTAT-G-TA--TATGTGCTATTACCTGAGTGAAAAC-AGAGAA---TACTGATAC
gi|10 : aatttctacgtaaatcaagagagttagaaaatgcacaaaaataactTACTTCTA--CCCTATCTGTAAATGT-AAGATATAGATGTTTC-ATGTCTCATGTTGTTTCACCTTGTAC-T-TA--TATGTGATGTTTCCTGAGTCGAAAT-AAAGAC---TACTGACACtgcaaaaaataaaatggatatatctaacacattttt
gi|11 : atgaTATCTGTAAATAT-TAT-TTTA-TTGTTTC-ATACC-CATCTTGTTTTACCATGTAT-T-TACTTAATTG-TATTACCTGATTGAAAAT-AAAGAA---TA-TGAtgtttctacagtgatacaacacaagaagtttatacaa
gi|12 : cgtttttctgatttaataccgtttaaatatttgatcactgAAAGAAAAAAATACTAACCTCGCGATCATTAAACCCAAACCGTTCCACATACATATA---T--ACACAAACAATACCGAATTTGTATAGAAACACCTGTA------CTGAattctgaaaaataa
gi|13 : aaatctacaaaacaaaaaagacagaacaaaaaatagtatcgtgcaaTACTA--TCCTAACTCTAAATGA-TTAATTTA-ATGTTTT-ATACCTCATTTTGATTCACCATGTAT-T-TA--AAGGTGATGCTACCATAGTGAAA
gi|14 : actttcattacaaaccaaccaatcaaaaaagttg----TCC-----------TCAAGATAAAA-TACACTTTTTACAACCGACAACAC--AAATAAGCATGCAGTCCGTGATTCAAATA--CCCATTGACGGCCAATTAATGGGAATAATAGCT-------ACA-------CTAGACA
gi|15 : ATGG-TTCGTCGTACGCAATACAAAGAA--AA-TA-TATCCGAGTATCA---GTT-TAGCTAACTTACTTTTAGCT-----GTTTT-------TTTTTTTATCGTTTATTGT--CATA--tttaacaaac
gi|16 : TGCTAGCAGTC--TATAGACAATGTCTCCTTTTA---A--G-------C-----------T--A--TAATAATAGATTTTT-ACAACTGACAATATTGAAATAAGCATGCAGCCTGTtatattgagttagaatat
gi|17 : TAT-T-TA--TATGTTATGTTACCTGAGAGATAAT-GAAGAA---TAGTGACAC
gi|2 : ATGTACCATATATCAAATAAATAGGATAATACTCACCTCACGACCATTAAAT-----CTACTCGACATTT----A---T--GCACAAATACTAAAGAATCTGTATA-AAACAACCTTACTCAATCTGACAGATTCAGACATTTAA-A-GAAATAT--ATAAAACT-ACATTAAAGACCTAA-TTAAATATAATCTAGCCGCTGGTGACATACACTGAAACCGCCGATTCCACGTTTATGCTAGAACTCTATATATATAACGTTCCCCTTCAC--C--GA----TCC-----------TCAAGTTAAAATTACATTTTT-ACAACCGACAATGTTGAAATAAGCATGCATCCCGTGACTCGGATA--CACATTGACGGTCAATGAATGGACATAACGGCT-------ACA-------CCAGACAATGGGCAGACTTGACTATACCTCTACATAATATTATGGCTTGATAGCCTGCTGCACA---AA--AA----------AATAACAATTCC--TAACTGA-TCA-TG--ATTTAAATGG-TTT-------G---TTCAGTGTTTATAGCCACATG--ATTG--TGCA-AAACT-TTTATTATCTTCATAACTTTATATAGTCCCTATTTCAACGTATTT-CA----AATATGTACTTTC---T-GTGTTACAC--ACATGTA-------TTTTCGCTATTAACGCTTGAAAACA-T-TTCCagatatttattaaaatatgaa
gi|2 : ACTGTTA--CCCTATCTGCAAATGT-AAAAGTAA-ATGTGCT-ATTCCT-ATACTGGTTCACCATGTAT-T-TA--TACGTAATGTTACCTGCGTGCAAATAAAAAAA---TATTGAAACataaaaaaacactgttaccctatctgcaaatgtaaaagtaaatgtgctattcctatactggttcaccatgtatttatacgtaatgttacctgcgtgcaaataaaaaaatattgaaactgagactgtact
gi|20 : atgtaccatatatcaaataaataggataatactcacctcacgaccattaaatctactcgacatttatgcacaaatactaaagaatctgtataaaacaaccttactcaatctgacagattcagacatttaaagaaatatataaaactacattaaagacctaattaaatataatctagccgctggtgacatacactgaaaccgccgattccacgtttatgctagaactctatatatataacgttccccttcaccgatcctcaagttaaaattacatttttacaaccgacaatgttgaaataagcatgcatcccgtgactcggatacacattgacggtcaatgaatggacataacggctacaccagacaatgggcagacttgactatacctctacataatattatggcttgatagcctgctgcacaaaaaaataacaattcctaactgatcatgatttaaatggtttgttcagtgtttatagccacatgattgtgcaaaacttttattatcttcataactttatatagtccctatttcaacgtatttcaaatatgtactttctgtgttacacacatgtattttcgctattaacgcttgaaaacatttccataaaaaaacTTGTTTCACCATGTAT-T-TA--TATGTGATGTTACATGtgagactgtact
gi|3 : ATGTACCTAACATCAAATAAATAAAATAATACTCACCTCGCGATCATTAAATCCAAACC--TCCACATGCAT--G---TTCAAACCAACAATAAAGACTCTGTATAGAAACAGCCGTA------CTGACA-----------TTGA-ATGAAATTT--ATAAAAAT-ATA--------CCCA-CTGAAC---------CCGCTGGT-------------GCC-CC--TT------TTATGCTAGTACAC--TTTATATAACGCCCCCCTTCA---CC-AA----CCC-----------TCAAGTTAAAAATACACTTTT-ACAACCGACAACGTTGAAATAAGCATGCAGCCCGTGATCCAGATA--CCCATTGACGGTCAATGAATGGACATAACA--------------------TTGAACAA-------ACTTGACTTTACCTCTACATAATATTATGG-TTAATGGCCTGCAAAACA---AA--AATCC-TATCTGAGTATTA---TCGATAACTGACTCTCTGTTATTT-----G-TTT-------GTATTTTAGTGTTTATAGT--CATA--A--G--CGCA-AATTT-ATCCTTATTTTTA------CATATTGCTCCTAGCTCAACTTATGT-TA----AATGTGTATTTTCT-TT-GTGCCACACAAACATGTA-------TTTTCACTATTTACGCGTAAAAACGCT-CTCCCCCACCC-C---AAGCC----------------------G---ACTAAGATTCAAATCAAAACAAACAAAACTGTTCACCATT-ACTGTACTACTA--CCCTATATGTAAATGGAAAAATTTA-ATGTTTT-ATGCCTCATGTTGTTTCACCATGTAT-T-TA--TATGTGATGTTACCTGAGTGAAAAT-AAAGAA---TACTGATAC
gi|4 : cgtcGTAAAGAAACAGCTGTA------CTGAC-------------CAATA-CAAACATTGAAAAAGAT-ATA--------TATAATTAAGT---------TCACT--T-------------AAC-C--------------TGCTGGT-----------------TCCCTTTTTT---G--GACTTGTCG-----------TCAAGTTAAAAATACTCTTTT-TCATCTGACAACATTGAAATAAGCATGCAGCCCGTGATTCAGATA--CCCATTGATGGTCATTGAATGGGAATTACAGCT-------ACACCAGACATTAAGCAA-------ACTTGATTTTATGTTCACATTATATTAAGA-TTCATGGCAAACAATACA---AA--AA-A---ATCTAA-T-TTA-----GAAAA-----TCTATGTT--TT-----G-TTT-----------TTTATTATTGATTGC--CATA--T--G--TGTA-AAATT-ATTCTTATTGTCA------TATATTGCTCCTATTTCACCTGATTT-TA----AATATGTAC-------------CACACAAAAATATA-------TATTTG-TA--AAAGCTTGAAAACGCT--TCCCCCACCC-CCTTAAGCCTA--------------------GCTGACTAAAACTCAGAACCAAACAAAC-AAATTGATCACCACT-ACTGTACTACTA--CCCTTACAGTAAATGT-AAAATTTA-ATGTTTT-GTGCCTCATGTTGTTTCACCATGTATATATA--TATGCGATGTTACCTGAGTGAAAAT-A
gi|5 : GACTTTACCTCTACATAATGTTATGG-TTTATGGCCTGCTATACA---AA--AA-CCCTATCTGAGTATTA---TCGATAACTGACTCACTGTTATTT-----G-TTT-------GTATTTTAGTGTTTATAGT--CATA--A--G--TGCA-CATTT-ACTCTTATTTTCA------TATATTGCTCCTAGTTCACCATATTT-TA----AATGTGTTCTTTTT-TTTGTGCCACACAAACATGTAAAATGTATTTTCGCTATTTACGCGTGAAAACGCT-CTTCCCCACCC-C---AAGCC----------------------G---ACTTACATTCAAAACCAAACAAACAAAACTGTTCACCATA-ACTGTACTACCA--ACCTATATGTAAATGT-AAAATTTA-ATGTTTT-ATGCCTCATGTTATTTCACCATGTAT-T-TA--TATGTGATGCAACCTGAGTGAAAAT-AAAGAA---TACTGAc
gi|6 : ATGG-TTCATGGCACGCAATACA---AAGGAA-CC-TAACTAAGTATCA---ACCATAGCTTATTCACTGCTGTTT-----G-TTTTTTAGGAGT-TTTTAACGTTAATTTT--CAAA--T--G--TGTT-AAAAT-ATTCTTCTTGTCA------TATATTGCTCCTTATTCATCTTATTTATACCTTGATGTGTAC---CTATT-GTGCCACACATACATATA-------TATACGCAA---AAGCGTAAAAACGCT-CTCCCCCACCCAC---TAACC----------------------G---ACGAAGATTCAGTACCAAACAAATGAA-TTGTTCTTCACT-ACTTTAATACAAA-TCTTATCTGTAAATGA-AATATTTT-ATTTTTTTATGCCTCATTTTGTTTCACCTTGTAT-T-TA--TATATGTTATTACCTGAGTGAAAAT-GAAGAA---TAaaactgaataatgggtacc
gi|7 : ATAAAGCAATACCCACCTCACGGCAATTAAATCTAAACAATTACGCATG-A---A---T--ACACAAACCATAAATAACTTGTATAGAAACAGCTGTA------CTGA
gi|8 : tgtcaaccaatcaaatataataccaggacaggaaatgtacgttttgtatacttaatcacctgacagatgagtatcattatttaatagtatgtcccttctttaaaaataaaagaaaacatttgttaccataatattactataaatattcaaataccctgaaatactaacaactgcttacaacaaactcaatttatacaccacaaaaagtcggtacatttgtcaaattactgcccaaatcaataaagaaaatatgcacaacaaaaatacaattcacaatattTATCATATATCAATTACA-AAATCAGTACTCACCTCACTTCCATTAAATCCATTCCATTTCACACG-A---A---T--ACACAAACAATAAAGAATATGTATAG
gi|9 : tactttttgcgtacacaatgacatgtctgatgagtatcattatttattagtgtcctttctttaaaattgaaagtacccagaatactactataatcatccttatataatcaactgctcaaaacaactcgattaacacaatacaaaaagtaagtacatttgccaaatttgagctcagatcaataaagtaaaaaaatgcacaaaatcaaCAGAACTAAACAAACATACTTATGCAACACT-ACTGTGTCACT---------------ATGT-AAAATTTG-ATGGTTT-ATATCTCATTTT-TTTCATCATGGGT-T-TA--TATATAATGTTACCTGAGTGAATAT-AAAGAACATTAATGACA
blockSeqs : G C G CATATAT C CTCAAT CAGATTCAGACATTTAAA A TG C . ATTAAAGACCTAATTAAATATAATCTAGCCGCTGGTGACATACACTGAAACCGCCGATTCCACGTTTA CAGT TA A G T GGACTTGTCG C A T A . ACACCAGACA TGGGCAG C C AC A AAGAA TCC CG ATTCC A C AAATG T TTTAGGAGTT T CCA ATT . . C . T TAACTT T A A CCTT TTTTTTTT AAATGTA C TTA T G T A CTT TAGCTG A A C . A A G T G A A CT A CAT C
blockSeqs : T C A CATGTTC A . CATTGAAT T . A . ACCCACTGAACCCGCTGGTGCCCCTTTTA AACT . A T T CCGATCC C T . A . ACA . . G CT T AAGG CCC TG TCGA G C . . TTTT A T A . . T . T . G A . . TTTCTTT . C TTT G A C . . G A A C . . . . . C . . . . . G
blockSeqs : T T A TAT G . CCAATA A . A . ATATAATTAAGTTCACTTAACC TACA . T T C CCAACCC C A . G . ACA . . A CT A AA TA TA TCGA G C . . GTAT A T T . . T . G . T C . . TTTCT . C TTT T G C . . G G A C . . . . . T . . . . . T
blockSeqs : T C A AAT G . T . . . T AGC C A . G . . . C AA A AA CC TG ACCA G T . . GTAT T C A . . T . T . G C . . CTATT . C A G G C . . G A C T . . . . . A . . . . . C
blockSeqs : . . . AAT G . . . . A . T CT T AA A TA GTT T . . . G A T T . . A . G . A T . . . . . . G A . . . A . . . . . G . . . . . C
blockSeqs : . C AC A AA . . GA . . . . . T T . . . . G . . . . . A
blockSeqs : . . . . G . . . . . .
blockSeqs : . . . . T . . . . .
blockSeqs : . . . T . . . .
blockSeqs : . . .
blockSeqs : . . .
blockSeqCons : AAT********* CCGGCCC******************* ** ACA************** AA***** CN** T** N**** ** C* G************************* **
originalCons : NNNNATGTACCATATATCAAATAAATAAAACAATACTCACCTCGCGACCATTAAATCCAAACCATTCCACATGCA---A---T--ACACAAACAATAAAGAATTTGTATAGAAACAGCCGTA------CTGACA-----------TCGA-A-GAAATAT--ATAAAANT-ATA--------CNCA-TTAAAC---------CCGCTGGT-------------ACC-CC--TT------TTATGCTAGNACTC--TATANATAACGTCCCCCTTCA---C--GA----TCC-----------TCAAGTTAAAAATACACTTTT-ACAACCGACAACGTTGAAATAAGCATGCAGCCCGTGATTCAGATA--CCCATTGACGGTCAATGAATGGAAATAACAGCT-------ACA-------TTAAACAA-------ACTTGACTTTACCTCTACATAATATTATGG-TTNATGGCACGCAATACA---AA--AA-CC-TATCCGAGTATCA---NCGATAACTGACTCACTGTTATTT-----G-TTT-------GTATTTTAGTGTTTATNGT--CATA--A--G--TGCA-AAANT-ATTCTTATTNTCA------TATATTGCTCCTANTTCACCTTATTT-TA----AATGTGTACTTTCT-TT-GTGCCACACAAACATGTA-------TTTTCGCTATTNACGCGTGAAAACGCT-CTCCCCCACCC-C---AAGCC-A--------------------G---ACTAAGATTCAGAACCAAACAAACGAAATTGTTCACCACT-ACTGTACTACTA--CCCTATCTGTAAATGT-AAAATTTA-ATGTTTT-ATGCCTCATNTTGTTTCACCATGTAT-T-TA--TATGTGATGTTACCTGAGTGAAAAT-AAAGAA---TACTGACAC
finalCons : NNNNATGTACCATATATCAAATAAATAAAACAATACTCACCTCGCGACCATTAAATCCAAACCATTCCACATGAAT---------ACACAAACAATAAAGAATTTGTATAGAAACAGCCGTA------CTGACA-----------TCGA-A-GAAATAT--ATAAAANT-ATA--------CNCA-TTAAAC---------CCGCTGGT-------------ACC-CC--TT------TTATGCTAGNACTC--TATANATAACGTCCCCCTTCACCGGCCC-------------------TCAAGTTAAAAATACACTTTT-ACAACCGACAACGTTGAAATAAGCATGCAGCCCGTGATTCAGATA--CCCATTGACGGTCAATGAATGGAAATAACAGCTACA--------------TTAAACAA-------ACTTGACTTTACCTCTACATAATATTATGG-TTNATGGCACGCAATACAAA-----AACN--TATCCGAGTATCA---NCGATAACTGACTCACTGTTATTT-----G-TTT-------GTATTTTAGTGTTTATNGT--CATAN----G--TGCA-AAANT-ATTCTTATTNTCA------TATATTGCTCCTANTTCACCTTATTT-TA----AATGTGTACTTTCT-TT-GTGCCACACAAACATGTA-------TTTTCGCTATTNACGCGTGAAAACGCTC-TCCCCCACCC-C---AAGCCG-------------------------ACTAAGATTCAGAACCAAACAAACGAAATTGTTCACCACT-ACTGTACTACTA--CCCTATCTGTAAATGT-AAAATTTA-ATGTTTT-ATGCCTCATNTTGTTTCACCATGTAT-T-TA--TATGTGATGTTACCTGAGTGAAAAT-AAAGAA---TACTGACAC
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|18 ): TACTATGTCAGTAGAGCTTATACCAGTAAAATGTCACAACAAGATAAGACTTCATATAAA
Unaligned ( gi|19 ): ATTGTAATAGATATTCATATAGCATAGTGTGTTTTTC
Alignments
lowQualScore : 222222222222222 111111 66666666666666666666 11 1 999999999999999999999999999999999999999999999999999999999999999999999 11 66666666666666666666666666 11 44444444444444444 3333333 1111111 1111 1111 11111 33333333333 1111111111111 111111 1111 222222222 2222222 11 77777777777777777777777777777 1 11
lowQualScore : 0 3 0 1 1 888888888888888 0 1 0 999999 00000000000000000000 1 33 1 0 111111111111111111111111111111111111111111111111111111111111111111111 2222 11 1 3 3 33333333333333333333333333 6 6 3 6 2 11 0 11111111111111111 2222222 5 1 11 5 0000000 7777 1 55 5 2222 1 5 0 0 0 44444 5 44444444444 1 2 7777777777777 1 1 999999 1 1 6 4444 999999999 1111111 2 999 1 3 00 8 22222222222222222222222222222 4 3 5 6 00 4 4 4 2 3 3 44 4 777 4
lowQualScore : . . . . . ............... . . . ...... .................... . .. . . ..................................................................... .... .. . . . .......................... . . . . . .. . ................. ....... . . .. . ....... .... . .. . .... . . . . . ..... . ........... . . ............. . . ...... . . . .... ......... ....... . ... . . .. . ............................. . . . . .. . . . . . . .. . ... .
lowQualScore : 6 2 7 0 7 000000000000000 3 0 7 222222 88888888888888888888 2 88 0 0 222222222222222222222222222222222222222222222222222222222222222222222 8888 00 0 8 8 22222222222222222222222222 7 7 5 7 2 00 6 88888888888888888 5555555 7 0 77 4 3333333 4444 9 77 0 4444 7 3 7 1 1 33333 7 66666666666 0 3 4444444444444 0 0 222222 0 0 7 2222 000000000 7777777 5 777 0 7 33 0 44444444444444444444444444444 7 2 2 7 66 0 0 0 4 3 3 66 0 888 5
consensus : NNNNATGTACCATATATCAAATAAATAAAACAATACTCACCTCGCGACCATTAAATCCAAACCATTCCACATG-A---A----T----ACACAAACAATAAAGAATTTGTATAGAAACAGCCGTA------CTGACA-----------TCGA-A-GAAATAT--ATAAAANT-ATA--------CNCA-TTAAAC---------CCGCTGGT-------------ACC-CC--TT------TTATGCTAGNACTC--TATANATAACGTCCCCCTTC---ACCG-----ACC--------C--TCAAGTTA-AA-AATACACTTTT-ACAACCGACAACGTTGAAATAAGCATGCAGCCCGTGATTCAGATA--CCCATTGACGGTCAATGAATGGAAATAACAGCT-------ACA-------TTAAACAA-------ACTTGACTTTACCTCTACATAATATTATGG-TTNATGGCACGCAATACA---AA--AA-CN-TATCCGAGTATCANCGATAACTGACTCACTGTTATTT-----G-TTT-------GTATTTTAGTGTTTATNGTCA------TA----TGTGCAAAATTATTCTTATTNTCA------TATATTGCTCCTANTTCACCTTATTT-TA----AATGTGTACTTTCT-TT-GTGCCACACAAACATGT-------ATTTTCGCTATTNACGCGTGAAAACGCT-CTCCCCCACCC-C---A--------AGCC-A-C---------GACTAAGATTCAGAACCAAACAAACGAAATTGTTCACCACT-ACTGTACTACTA--CCCTATCTGTAAATGT-AAAATTTA-ATGTTTT-ATGCCTCATNTTGTTTCACCATGTAT-T-TA--TATGTGATGTTACCTGAGTGAAAAT-AAAGAA---TACTGACAC
Reference ( family-2270 ) : NNNNATGTACCATATATCAAATAAATAAAACAATACTCACCTCGCGACCATTAAATCCAAACCATTCCACATG-A---A----T----ACACAAACAATAAAGAATTTGTATAGAAACAGCCGTA------CTGACA-----------TCGA-A-GAAATAT--ATAAAANT-ATA--------CNCA-TTAAAC---------CCGCTGGT-------------ACC-CC--TT------TTATGCTAGNACTC--TATANATAACGTCCCCCTTC---ACCG-----GCC--------C--TCAAGTTA-AA-AATACACTTTT-ACAACCGACAACGTTGAAATAAGCATGCAGCCCGTGATTCAGATA--CCCATTGACGGTCAATGAATGGAAATAACAGCT-------ACA-------TTAAACAA-------ACTTGACTTTACCTCTACATAATATTATGG-TTNATGGCACGCAATACA---AA--AA-CN-TATCCGAGTATCANCGATAACTGACTCACTGTTATTT-----G-TTT-------GTATTTTAGTGTTTATNGTCA------TA----NGTGCAAAANTATTCTTATTNTCA------TATATTGCTCCTANTTCACCTTATTT-TA----AATGTGTACTTTCT-TT-GTGCCACACAAACATGT-------ATTTTCGCTATTNACGCGTGAAAACGCT-CTCCCCCACCC-C---A--------AGCC-------------GACTAAGATTCAGAACCAAACAAACGAAATTGTTCACCACT-ACTGTACTACTA--CCCTATCTGTAAATGT-AAAATTTA-ATGTTTT-ATGCCTCATNTTGTTTCACCATGTAT-T-TA--TATGTGATGTTACCTGAGTGAAAAT-AAAGAA---TACTGACAC
gi|1 : ATACATAAAACAATATTCACATCAAAATCTATAAATCAGAACCATTTTAAGTG-A---AAACAT----ACACAAACAATTAGGAACTTGTATAGAAACATCTGTA------CGGA-------------TCGA-T-GAAATGT--ATAAAACTCAT---------TGCA-GTAAAC---------CCGTCGGT-------------TCC-CC--TT------TT-TGCTGGAACTC--TATAGATAACG-CCCTCTCC---AGCGCAGGAACCAGTGTAGACGGTTAAGTTA-CA-AATATACTTTA-ACGACCGACAGCCTTAAAATAAACATGCAGCCCATGATACAGATACCCCCATTGACGGTCAATGAATTGAAATACCAGCCATATCAGATA-------TTAAACAA-------ATTTGAATTTACCTCTGCATAATATCATGG-TTGATGACACTC--TACA-------------TATTCAAGTACCAGTGATACCTAATTCACTGTTATTT-----G--TT-------GAAACTTAGTGTGTATAA-CATACTAGTA----TGTATAGAATAAGTCTTACTGCTA------CATATTGCTCAGGTTTTTCCTTACTT-TA----GATATGTACGT--T-TT-GTACCACACAAACATGT-------ATTTTCGATATTCTCCCAT---ACCCCTATTCCCTCACCC-C---ATCCCACTCACCCCATCCCCAAAAATGACTAGGATTCAGAACCAACCCAAC-AAATTACTCA-CACTAACTGTACTACTACCCCCTATATGTAAATGT-TTAATTTA-ATGTTTT-ATG-------TTGTTTGACCATGTAT-G-TA--TATGTGCTATTACCTGAGTGAAAAC-AGAGAA---TACTGATAC
gi|10 : aatttctacgtaaatcaagagagttagaaaatgcacaaaaataactTACTTCTA--CCCTATCTGTAAATGT-AAGATATAGATGTTTC-ATGTCTCATGTTGTTTCACCTTGTAC-T-TA--TATGTGATGTTTCCTGAGTCGAAAT-AAAGAC---TACTGACACtgcaaaaaataaaatggatatatctaacacattttt
gi|11 : atgaTATCTGTAAATAT-TAT-TTTA-TTGTTTC-ATACC-CATCTTGTTTTACCATGTAT-T-TACTTAATTG-TATTACCTGATTGAAAAT-AAAGAA---TA-TGAtgtttctacagtgatacaacacaagaagtttatacaa
gi|12 : cgtttttctgatttaataccgtttaaatatttgatcactgAAAGAAAAAAATACTAACCTCGCGATCATTAAACCCAAACCGTTCCACATACATATA----T----ACACAAACAATACCGAATTTGTATAGAAACACCTGTA------CTGAattctgaaaaataa
gi|13 : aaatctacaaaacaaaaaagacagaacaaaaaatagtatcgtgcaaTACTA--TCCTAACTCTAAATGA-TTAATTTA-ATGTTTT-ATACCTCATTTTGATTCACCATGTAT-T-TA--AAGGTGATGCTACCATAGTGAAA
gi|14 : actttcattacaaaccaaccaatcaaaaaagttgC--------C--TCAAGATA-AA-A-TACACTTTTTACAACCGACAACAC--AAATAAGCATGCAGTCCGTGATTCAAATA--CCCATTGACGGCCAATTAATGGGAATAATAGCT-------ACA-------CTAGACA
gi|15 : tATGG-TTCGTCGTACGCAATACAAAGAA--AA-TA-TATCCGAGTATCAGTT-TAGCTAACTTACTTTTAGCT-----GTTTT-------TTTTTTTATCGTTTATTGTCA------TA----TATtttaacaaac
gi|16 : TGCTAGCAGTC--TATAGACAATGTCTCCTTTT---A-------------------------AGCTATAATAATAGATTTTT-ACAACTGACAATATTGAAATAAGCATGCAGCCTGTattgagttagaatat
gi|17 : TAT-T-TA--TATGTTATGTTACCTGAGAGATAAT-GAAGAA---TAGTGACAC
gi|2 : ATGTACCATATATCAAATAAATAGGATAATACTCACCTCACGACCATTAAAT-----CTACTCGACATT-T---A----T----GCACAAATACTAAAGAATCTGTATA-AAACAACCTTACTCAATCTGACAGATTCAGACATTTAA-A-GAAATAT--ATAAAACT-ACATTAAAGACCTAA-TTAAATATAATCTAGCCGCTGGTGACATACACTGAAACCGCCGATTCCACGTTTATGCTAGAACTCTATATATATAACGTTCCCCTTC---ACCG-----ATC--------C--TCAAGTTA-AA-ATTACATTTTT-ACAACCGACAATGTTGAAATAAGCATGCATCCCGTGACTCGGATA--CACATTGACGGTCAATGAATGGACATAACGGCT-------ACA-------CCAGACAATGGGCAGACTTGACTATACCTCTACATAATATTATGGCTTGATAGCCTGCTGCACA---AA--AA-AA-TAAC--AAT-TC--C--TAACTGA-TCA-TG--ATTTAAATGG-TTT-------G---TTCAGTGTTTATAGCCA------CATGATTGTGCAAAACTTTTATTATCTTCATAACTTTATATAGTCCCTATTTCAACGTATTT-CA----AATATGTACTTTC---T-GTGTTACAC--ACATGT-------ATTTTCGCTATTAACGCTTGAAAACA-T-TTCCagatatttattaaaatatgaa
gi|2 : ACTGTTA--CCCTATCTGCAAATGT-AAAAGTAA-ATGTGCT-ATTCCT-ATACTGGTTCACCATGTAT-T-TA--TACGTAATGTTACCTGCGTGCAAATAAAAAAA---TATTGAAACataaaaaaacactgttaccctatctgcaaatgtaaaagtaaatgtgctattcctatactggttcaccatgtatttatacgtaatgttacctgcgtgcaaataaaaaaatattgaaactgagactgtact
gi|20 : atgtaccatatatcaaataaataggataatactcacctcacgaccattaaatctactcgacatttatgcacaaatactaaagaatctgtataaaacaaccttactcaatctgacagattcagacatttaaagaaatatataaaactacattaaagacctaattaaatataatctagccgctggtgacatacactgaaaccgccgattccacgtttatgctagaactctatatatataacgttccccttcaccgatcctcaagttaaaattacatttttacaaccgacaatgttgaaataagcatgcatcccgtgactcggatacacattgacggtcaatgaatggacataacggctacaccagacaatgggcagacttgactatacctctacataatattatggcttgatagcctgctgcacaaaaaaataacaattcctaactgatcatgatttaaatggtttgttcagtgtttatagccacatgattgtgcaaaacttttattatcttcataactttatatagtccctatttcaacgtatttcaaatatgtactttctgtgttacacacatgtattttcgctattaacgcttgaaaacatttccataaaaaaacTTGTTTCACCATGTAT-T-TA--TATGTGATGTTACATGtgagactgtact
gi|3 : ATGTACCTAACATCAAATAAATAAAATAATACTCACCTCGCGATCATTAAATCCAAACC--TCCACATG-C---A----TGTTCAAACCAACAATAAAGACTCTGTATAGAAACAGCCGTA------CTGACA-----------TTGA-ATGAAATTT--ATAAAAAT-ATA--------CCCA-CTGAAC---------CCGCTGGT-------------GCC-CC--TT------TTATGCTAGTACAC--TTTATATAACGCCCCCCTTC---ACCA-----ACC--------C--TCAAGTTA-AA-AATACACTTTT-ACAACCGACAACGTTGAAATAAGCATGCAGCCCGTGATCCAGATA--CCCATTGACGGTCAATGAATGGACATAACA--------------------TTGAACAA-------ACTTGACTTTACCTCTACATAATATTATGG-TTAATGGCCTGCAAAACA---AA--AATCC-TATCTGAGTATTATCGATAACTGACTCTCTGTTATTT-----G-TTT-------GTATTTTAGTGTTTATAGTCA------TA----AGCGCAAATTTATCCTTATTTTTA------CATATTGCTCCTAGCTCAACTTATGT-TA----AATGTGTATTTTCT-TT-GTGCCACACAAACATGT-------ATTTTCACTATTTACGCGTAAAAACGCT-CTCCCCCACCC-C---A--------AGCC-------------GACTAAGATTCAAATCAAAACAAACAAAACTGTTCACCATT-ACTGTACTACTA--CCCTATATGTAAATGGAAAAATTTA-ATGTTTT-ATGCCTCATGTTGTTTCACCATGTAT-T-TA--TATGTGATGTTACCTGAGTGAAAAT-AAAGAA---TACTGATAC
gi|4 : cgtcGTAAAGAAACAGCTGTA------CTGAC-------------CAATA-CAAACATTGAAAAAGAT-ATA--------TATAATTAAGT---------TCACT--T-------------AAC-C--------------TGCTGGT-----------------TCCCTTTTTTGGACTT-----GTC--------G--TCAAGTTA-AA-AATACTCTTTT-TCATCTGACAACATTGAAATAAGCATGCAGCCCGTGATTCAGATA--CCCATTGATGGTCATTGAATGGGAATTACAGCT-------ACACCAGACATTAAGCAA-------ACTTGATTTTATGTTCACATTATATTAAGA-TTCATGGCAAACAATACA---AA--AA-AA-T---CTAAT-TTA--GAAAA-----TCTATGTT--TT-----G-TTT-----------TTTATTATTGATTGCCA------TA----TGTGTAAAATTATTCTTATTGTCA------TATATTGCTCCTATTTCACCTGATTT-TA----AATATGTAC-------------CACACAAAAATAT-------ATATTTG-TA--AAAGCTTGAAAACGCT--TCCCCCACCC-CCTTA--------AGCCTAGCT--------GACTAAAACTCAGAACCAAACAAAC-AAATTGATCACCACT-ACTGTACTACTA--CCCTTACAGTAAATGT-AAAATTTA-ATGTTTT-GTGCCTCATGTTGTTTCACCATGTATATATA--TATGCGATGTTACCTGAGTGAAAAT-A
gi|5 : GACTTTACCTCTACATAATGTTATGG-TTTATGGCCTGCTATACA---AA--AA-CCCTATCTGAGTATTATCGATAACTGACTCACTGTTATTT-----G-TTT-------GTATTTTAGTGTTTATAGTCA------TA----AGTGCACATTTACTCTTATTTTCA------TATATTGCTCCTAGTTCACCATATTT-TA----AATGTGTTCTTTTT-TTTGTGCCACACAAACATGTAAAATGTATTTTCGCTATTTACGCGTGAAAACGCT-CTTCCCCACCC-C---A--------AGCC-------------GACTTACATTCAAAACCAAACAAACAAAACTGTTCACCATA-ACTGTACTACCA--ACCTATATGTAAATGT-AAAATTTA-ATGTTTT-ATGCCTCATGTTATTTCACCATGTAT-T-TA--TATGTGATGCAACCTGAGTGAAAAT-AAAGAA---TACTGAc
gi|6 : ATGG-TTCATGGCACGCAATACA---AAGGAA-CC-TAACTAAGTATCAACCATAGCTTATTCACTGCTGTTT-----G-TTTTTTAGGAGT-TTTTAACGTTAATTTTCA------AA----TGTGTTAAAATATTCTTCTTGTCA------TATATTGCTCCTTATTCATCTTATTTATACCTTGATGTGTAC---CTATT-GTGCCACACATACATAT-------ATATACGCAA---AAGCGTAAAAACGCT-CTCCCCCACCCAC---T--------AACC-------------GACGAAGATTCAGTACCAAACAAATGAA-TTGTTCTTCACT-ACTTTAATACAAA-TCTTATCTGTAAATGA-AATATTTT-ATTTTTTTATGCCTCATTTTGTTTCACCTTGTAT-T-TA--TATATGTTATTACCTGAGTGAAAAT-GAAGAA---TAaaactgaataatgggtacc
gi|7 : ATAAAGCAATACCCACCTCACGGCAATTAAATCTAAACAATTACGCATG-A---A----T----ACACAAACCATAAATAACTTGTATAGAAACAGCTGTA------CTGA
gi|8 : tgtcaaccaatcaaatataataccaggacaggaaatgtacgttttgtatacttaatcacctgacagatgagtatcattatttaatagtatgtcccttctttaaaaataaaagaaaacatttgttaccataatattactataaatattcaaataccctgaaatactaacaactgcttacaacaaactcaatttatacaccacaaaaagtcggtacatttgtcaaattactgcccaaatcaataaagaaaatatgcacaacaaaaatacaattcacaatattTATCATATATCAATTACA-AAATCAGTACTCACCTCACTTCCATTAAATCCATTCCATTTCACACG-A---A----T----ACACAAACAATAAAGAATATGTATAG
gi|9 : tactttttgcgtacacaatgacatgtctgatgagtatcattatttattagtgtcctttctttaaaattgaaagtacccagaatactactataatcatccttatataatcaactgctcaaaacaactcgattaacacaatacaaaaagtaagtacatttgccaaatttgagctcagatcaataaagtaaaaaaatgcacaaaatcaaCAGAACTAAACAAACATACTTATGCAACACT-ACTGTGTCACT---------------ATGT-AAAATTTG-ATGGTTT-ATATCTCATTTT-TTTCATCATGGGT-T-TA--TATATAATGTTACCTGAGTGAATAT-AAAGAACATTAATGACA
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|18 ): TACTATGTCAGTAGAGCTTATACCAGTAAAATGTCACAACAAGATAAGACTTCATATAAA
Unaligned ( gi|19 ): ATTGTAATAGATATTCATATAGCATAGTGTGTTTTTC