lowQualScore : 2222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222 111111111111111111111111111111111111111111111111111111111111111111111111111111111111 111111111111111111111111111111111111111111111111111111111111 1111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 1 111111 222222222222222222 22222222 333333333333 111 111 22222222222 222222222222222 3333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333 222 1 11 22 222 111 22 11111 1 1 11 111111111111111111111111111111111111111111111111111111111111111111111111111111111111 1 666666666666666666666666666666666666666666666666666666666666 22222222222 6666666666666666666666666666666666666666666666666666666666666666666 111 1 333333333
lowQualScore : 2 5 0 9 999999 888888888888888888 44444444 2 999999999999 44 8 444 5 5 444 33333333333 2 222222222222222 6666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666 333 5 88 4 33 999 777 5 33 4 88888 7 0 4 44 0 000000000000000000000000000000000000000000000000000000000000000000000000000000000000 0 555555555555555555555555555555555555555555555555555555555555 88888888888 6 6 3333333333333333333333333333333333333333333333333333333333333333333 111 7 999999999
lowQualScore : . . . . ...... .................. ........ . ............ .. . ... . . ... ........... . ............... .................................................................................................... ... . .. . .. ... ... . .. . ..... . . . .. . .................................................................................... . ............................................................ ........... . . ................................................................... ... . .........
lowQualScore : 8 0 0 0 333333 777777777777777777 22222222 5 000000000000 66 0 000 0 0 000 88888888888 5 888888888888888 0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 333 0 00 0 00 777 555 0 66 3 66666 0 0 0 66 8 000000000000000000000000000000000000000000000000000000000000000000000000000000000000 0 555555555555555555555555555555555555555555555555555555555555 33333333333 7 0 5555555555555555555555555555555555555555555555555555555555555555555 777 0 444444444
consensus : GTGCCGTTTCACGAAACATCGTAAACTTACGTAAAAAATTATCGTAAGTTTTT--------AA-CNT----ACG--------AAAAAAGTTACGATATTCATTTTGCGTTTCACG-AACATCAA---CGTAAGTTTTTGCGTANGCCTAAGAA---AAAAAAANTT----CGTAAGTT-------TT------TCGTAGGACGCTCTTTAGTACAGGAGATAAGTAACTGGCCATAGAAACGTCGAC-----------A--C-----------GGTA---------GAGCACCTGTC--------------A--------------TTATTTTCTCGTTGCTTT-A-AATAAAA---GTTTATGCGTTGAAACTGAACACAAATGACGTCAGTTTTTAATTTACTACAAAATGNCGTANAAAATA-AAAAAAATACGTCAT---TCCAGTTTCGTTTATTAACTGTTCCAGCGCCGGTCGTAANTAATTAG--TCAGTCATGAGAATTGTAAGACAAATTTATATAATATTAATCTAAATAAATTTACAGTTAATACTGCATCTAGTTTATTACTTTTTT-ATACTCTGTCGTNTATAGGAG-TTATACAATGAATTTTAACGTAGTAAACGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGGGAGACCTTCATTCAAT-ATAA---------TAAATTAAATGATAATTTANGATAATTCAAATAATAATGAAAATTATNACAATAAAAGTAAATGATAATC--------GAGATAAAATAATGAAAATGACACACTTATTTTCC-TTTTTTGGCAGCTGTGCATTTCAAACATATTGGTATAAGT------------NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCTGCTGATGAT---GATACTAATAACAATATATAGTCATTTAAATTAAAGTACG-ATGATAATAATGATAATAAAATGAATCT
Reference ( gi|1 ) : GTGCCGTTCCACGAAACATCATAAACTTACGTAAAAAATTATCGTCAGTTTTT--------AA-CAT----ACG--------AAAAAAGTTACGATATTCATTTTGCGTTTCACG-AACATCAA---CGTAAGTTTTTGCGTACGCCTAAAAA---AAAAAAAGTT----CGTAAGTT-------TT------TCGTAGGACGCTCTTTAGTACAGGAGATAAGTAACTGGCCATAGAAACGTCAAC-----------A--C-----------GGTA---------GAGCACCTGTC--------------A--------------TTATTTTCTC-----------AATAAAA---GTTTATGAGTTGAAACTGAACACAAATGACGTCAGTTTTTAATTTACTACAAAATGACGT-AAAAATACAAAAAAATACGTCAT---TTCAGTTTCATTTATTAACTGTTTCAGTGCCGATC--AACTAATTAA--TCAGTCATGAGAATTGTAAGACAAATTTATATAATATTAATCAAAATAAATTTACAGTTAATATTGCATCTAGTTTATTACTTTTTT-ATACTCTGTCGTTTATAGGAG-ATATACAATGAATTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGAGAGACCTTCATTCAAT-ATAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAATAAAAGTAAATGATATTC--------GAGATAAAATAATGAAAATGACACACTTATTTTCC-TTTTTTGGCAGCTGTGCATTTCAAACATATTGATATAAGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCTGATGAT---GATACTAATAACAATAAATAGTCATTTAAATTAAAGTACT-ATGATAATAATGATAATAAAATGAATCT
gi|6 : GTGCCTTTTCATGAAAAATCGTAAACTTACGAAAAAAAGTAT--TCA-TTTT----------G-CAT----AGGCCTAAGAAAAAAAAGTT
gi|2 : gtccaggTGCCGTTTCACGAAACATCTTAAACTTACGCAAAAAATTATCGTAAGTTTTT--------AA-CTT----ACG--------AAAAAAGTTACGATATTCATTTTGCGTTTCACG-AACATCAA---CGTAAGTTTTTGCGTACGCCTAAGAA---AAAAAAATTT----CGTAAGTT-------TT------TCGTAGGACGCTCTTTAGTACAGGAGATAAGTAACTGGCCATAGAAACGTCAACATCCGGCACGAA--C-----------GGTA---------GAGCACCTGTC--------------A--------------TTATTTTCTC-----------AATAAAA---GTTTATGCGTTGAAACTGAACACAAATGACGTCAGTTTTTAATTTACTACAAAATGACGTAAAAAATAAAAAAAAATACGTCAT---TTCAGTTTCATTTATTAACTGTTCCAGTGCCGATC--AACTAATTAA--TCAGTCATGAGAATTGTAAGACAAATTTATATAATATTAATCTAAATAAATTTACAGTTAATATTGCATCTAGTTTATTACTTTTTT-ATACTCTGTCGTTTATAGGAG-ATATACAATGAATTTcgtgattttttcgtaggatactctttagtacaggagataagtaactggccatagaaatgtcaacatctggcatgaatggtagagcacctgccaatcataaatggttgttattttctcgttgctttgaaaataaaagtatatgcgttgaaactgaacacaaatgacgagtttttaatttactacaaaatatcatcaaaataaaaaaaatacgtgattcaagtttcatttattaactgtttcagtgccgatcaactaattaa
gi|10 : CCATTTCATGAAACATCGTAAACTTACATAAAAAATTATCGTAAGTTTTT--------AA-CTT----ACG--------AAAAAAGTTACTATATTC-----------CACG-AACATCAA---TGAATGTTTTTGCGTACGCCTAAGAA---AAAAA--GTT----TGTAAGTT-------TT------ATGTAGGACACTCTTTAGTACAGGAGATAAGTAACTGGCCATAGAAACATnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntaaattaaatgataatttaaattaattcaaataataatgaaaatgataataaaatgataacaataaaagtaaatgataatcgagataaaataatgaaaatgacacacttattttccttttttggcagctgtgcatttcaaacatattggtataag
gi|2 : CGTCCTACGAAA-------AACTTACG----AAATTTTTTT---TTCTT--------AGGCGT----ACG--------CAAAAACTTACG---TTGATGTT-CGTGAAACGCAAAATGAATATCGTAACTTTTTTCGTAAGT-TAAAAACTTACGATAATTTTTTGCGTAAGTTTAAGATGTT------TCGTGAAACG
gi|11 : tgcCGTCTTACTAAACATCGTAAGCTAAGATAAATT-TTATCGTAAGTTTTTTTAGTTACGA-TATCTTAACG--------AAAAAC-TTACG----TC------CGTCTTACC-AACAATAA---CGTAAGT-------------TAAAAA---AAA------T----CGTAAGTT-------TTTTTTTGTCGTACGACctctttagtacaggagataagtaactggccatagaaacgtcaacatccggcacgaacggtagagcacctgtcattattttctcaataaaagtttatgcgttgaaactgaacacaaatgacgtcagtttttaatttactacaaaatgacgtaaaaaataaaaaaaaatacgtcatttcagtttcatttattaactgttccagtgccgatcaactaattaatcagtcatgagaattgtaagacaaatttatataatattaatctaaataaatttacagttaatattgcatctagtttattacttttttatactctgtcgtttataggagatatacaatgaatttnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntaaattaaatgataatttaaattaattcaaataataatgaaaatgataataaaatgataacaataaaagtaaatgataatcgagataaaataatgaaaatgacacacttattttccttttttggcagctgtgcatttcaaacatattggtataag
gi|8 : gagAAAAAAT-A----CA-TTTTT--------AA-CTT----ACG--------AAAACAGTTA-----TTTATTTTGCATTTCACG-AACATCAA---CGTAATTTTTTGatgata
gi|6 : TTTTGCATAGGCCTAAGAA---AAAAAA-GTT----CGTGATTT-------TT------TCGTAGGATACTCTTTAGTACAGGAGATAAGTAACTGGCCATAGAAATGTCAAC-----------A--TCTGGCATGAATGGTA---------GAGCACCTGCC--------------AATCATAAATGGTTGTTATTTTCTCGTTGCTTTGAAAATAAAA---GTATATGCGTTGAAACTGAACACAAATGACG--AGTTTTTAATTTACTACAAAATATCAT-CAAAATA-AAAAAAATACGTGAT---TCAAGTTTCATTTATTAACTGTTTCAGTGCCGATC--AACTAATTAA--agagtactctttagtacaggagataagtaaattgccatagcaacgtcgatatccggcaaaaatggcggagcacctgtcaaacataaatggttattatttgctcattgcttttaaataaaacatatttaagcgttgaaac
gi|8 : gtccagggtgccttttcatgaaaaatcgtaaacttacgaaaaaaagtattca----CGTAA-TT-------TT------TTG-AGAGTACTCTTTAGTACAGGAGATAAGTAAATTGCCATAGCAACGTCGAT-----------ATCC-----------GGCAAAAATGGCGGAGCACCTGTCAAACATAAATGGTTA--------------TTATTTGCTCATTGCTTTTA-AATAAAACATATTTAAGCGTTGAAAC
gi|3 : aaaaaatacatttttaacttacgaaaacagttatttattttgcatttcacgaacatcaaAAAA---AAAAAAATACGTCAT---TTCAGTTTCATTTATTAACTGTTCCAGTGCCGATC--AACTAATTAA--TCAGTCATGAGAATTGTAAGACAAATTTATATAATATTAATCTAAATAAATTTACAGTTAATATTGCATCTAGTTTATTACTTTTTT-ATACTCTGTCGTTTATAGGAGAACA-ACAATGAATTT
gi|4 : AGATACGTCAGACATCCGGTTTTGTCTGATGATTCTCACAGCGCTGGTCGTAAATAAT--G--TCAGTCATGAGAATTGTAAGACAAATTTATATAATATTAATCTAAATAAATTTACAGTTAATACTGCATCTAGTTGATTACCTTTTTAATACTCTGTCGTATATAGGAG-TTATACAATGAATTT-NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGAGAGACCTTCATTCAAT-AT-----------TAAATTAAATGATAATTTATGATAATTCAAATAATAATGAAAATTATAATAATAAAAGTAAATGATAATT--------GAGATGAAATAAAGAAAATGACACACTTATTTTCC-TTTTTTGGCAGCTGTGCACTTCAAACATATTGGTATAAGT------------NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCTGCTGATGAT---GATACAAATAACAATATATAGTCATTTAAATTAAAG---------TAATAATGATAATAAAATGAnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncaataaaagtaaatgataatcgagatacaataatgaaaatgacacacttatttttcttttttggcagctgtgcatttcaaacatattggtataagtnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngctgatgatgatactaataacaatatatagtcatttaaattaaagtacgatgataataatgataataaaatgaatct
gi|5 : gcgtgatatccttcagaccgtgCAGCGCTGGTCGTAAATAAT--G--TCAGTCATGAGAACTGTAAGACAAATTTATATAATATTAATCTAAATAAATTTACAGTTAATACTGCATCTAGTTTATTACTTTTTT-ATACTATGTTGTATATAGGAG-TTATACAATGAATTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGGGAGACCTTCATTCAAT-AT-----------TAAATTAAATGATAATTTAAAATAATTCAAATAATAATGAAAATTATTATAATAAAAGTAAATGATAATT--------GAGATGAAATGATGAAAATGACACAGTTATTTTCC-TTTTTTGGTAGCTGTGCACTTCAAACATATTGGTATAAGT
gi|12 : aCAGCGCTGGTCGTAAATAAT--G--TCAGTCATGAGAATTGTAAGACAAATTTATATAAtactactactactactactacttctactaatgctgatgataatgatacagataacaatatatagtcatttaaattaaagtaataatga
gi|13 : gttgtagcgtgatatccttcagaccgtgagattcgccaggcatccgattttgtcttacgactctcaCAGCGCTGGTC--G--TAAATAACGTCAGTCATGAAAATTGTA
gi|7 : tgtagcgtgatatccttcagaccgtgagattcgtcagacattcggttttgtcttacgattctaaGAAG-TTATACAATGAATTTTAACGTAGTAAACGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-GGAGAGACATTCATTCNNN-NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGAGATAAAATAATGAAAATGACTCTCTTATTTTCC-TTTATTGGCAGCTGTGCATTTCAAACATATTG
gi|14 : GGGGAGACCTTCATTCAATAATAA
gi|2 : CAATAAAAGTAAATGATAATC--------GAGATAAAATAATGAAAATGACACACTTATTTTCC-TTTTTTGGCAGCTGTGCATTTCAAACATATTGGTATAAGattaaatgatattttaaattaattcaaataataatgaaaatgataataaaatgaaaa
gi|3 : tgccgtttcacgaaacatcttaaacttacgcaaaaaattatcgtaagtttttaacttacgaaaaaagttacgatattcattttgcgtttcacgaacatcaacgtaagtttttgcgtacgcctaagaaaaaaaaatttcgtaagtttttcgtaggacgctctttagtacaggagataagtaactggccatagaaacgtcaacatccggcacgaacggtagagcacctgtcattattttctcaataaaagtttatgcgttgaaactgaacacaaatgacgtcagtttttaatttactacaaaatgacgtaaaaaataaaaaaaaatacgtcatttcagtttcatttattaactgttccagtgccgatcaactaattaatcagtcatgagaattgtaagacaaatttatataatattaatctaaataaatttacagttaatattgcatctagtttattacttttttatactctgtcgtttataggagatatacaatgaatttnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntaaattaaatgataatttaaattaattcaaataataatgaaaatgataataaaatgataaCAATAAAAGTAAATGATAATC--------GAGATACAATAATGAAAATGACACACTTATTTTTC-TTTTTTGGCAGCTGTGCATTTCAAACATATTGGTATAAGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCTGATGAT---GATACTAATAACAATATATAGTCATTTAAATTAAAGTACG-ATGATAATAATGATAATAAAATGAATCT
gi|9 : aaaaaaaaaaatacgtcatttcagtttcatttattaactgttccagtgccgatcaactaattaatcagtcatgagaattgtaagacaaatttatataatattaatctaaataaatttacagttaatattgcatctagtttattacttttttatactctgtcgtttataggagaacaacaatgaatttnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnAATAAAAGTAAATGATAATC--------GAGATAAAATAATGAAAATGACACACTTATTTTCCTTTTTTTGGCAGCTGTGCATTTCAAACATATTGGTATAAGT
gi|5 : aaatgataatGCTGATGATAATGATACAGATAACAATATATAGTCATTTAAATTAAAGTAATAATGAnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngctgatgatgatgatactaataacaatatatagtcatttaaattaaagtaataatgataataaaatga
gi|15 : acagcgctggtcgtaaataatgtcagtcatgagaactgtaagacaaatttatataatattaatctaaataaatttacagttaatactgcatctagtttattacttttttatactatgttgtatataggagttatacaatgaatttnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnggggagaccttcattcaatattaaattaaatgataatttaaaataattcaaataataatgaaaattattataataaaagtaaatgataattgagatgaaatgatgaaaatgacacagttattttccttttttggtagctgtgcacttcaaacatattggtataagttactactactactactactacttctactaatCTGATGAT---GATACTAATAACAATATATAGTCATTTAAATTAAAGTACG-ATGATAATAATGATAATAAAATGAAT
gi|9 : TGATGAT---GATACTAATAACAATATATAGTCATTTAAATTAAAG---------TAATAATGATAATAAAATGA
gi|17 : aaatgataataataaaagtaaatgataatcgagataaaataatgaaaatgacacacttattttcctttttttggcagctgtgcatttcaaacatattggtataagtnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngctgaTGATGAT---GATACTAATAACAATATATAGTCATTTAAATTAAAG---------TAATAATGATAATAAAATGA
gi|19 : ctgaATAGTCATTTAAATTAAAGTACG-ATGATAATAATGATAATAAAATGAAT
2 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|16 ): TTATTGCTACTAGTACCAACACTTCTAATGCTGATGATAACGATAACAACTAGCATTGCATTGACATTAAACT
Unaligned ( gi|18 ): GTGTAGCGTGATATCCTACAGACCGTGAGATACGTCAGACATCCGGTTTTGTCTTACGAGTCTTA
Alignments
lowQualScore : 11111111111111111111111111111 2222222222222222222222222222222222222222222222222222222222222222
lowQualScore : 111 2222222222 11111 11 111111 999999999999999999999999999999999999999 00000000000000000000000000000 666666666666 111 22 1111 111 1111 11 11 8888888888888888888888888888888888888888888888888888888888888888888888 555555555555 333333333333 3333333333333333333333333333333333333333333333333333333333333333 33333333
lowQualScore : 2 77 111 6 1 9999999999 666 33333 3 0 44 2 999999 2 999999999999999999999999999999999999999 88888888888888888888888888888 555555555555 777 7 1 11 4444 000 0 5 00 0000 88 1 88 8 1 7 6 5555555555555555555555555555555555555555555555555555555555555555555555 444444444444 666 666666666666 7 0 5 9999999999999999999999999999999999999999999999999999999999999999 0 88888888
lowQualScore : . .. ... . . .......... ... ..... . . .. . ...... . ....................................... ............................. ............ ... . . .. .... ... . . .. .... .. . .. . . . . ...................................................................... ............ ... ............ . . . ................................................................ . ........
lowQualScore : 5 77 777 7 0 2222222222 888 00000 8 8 44 5 222222 0 555555555555555555555555555555555555555 55555555555555555555555555555 888888888888 555 3 0 33 2222 000 7 7 44 5555 00 0 55 0 0 8 7 6666666666666666666666666666666666666666666666666666666666666666666666 888888888888 222 555555555555 5 4 7 2222222222222222222222222222222222222222222222222222222222222222 7 11111111
consensus : GTGCCGTTTCACGAAACATCGTAAACTTACGTAAAAAATTATCGTAAG-TTTT---TA-ACTTACGA----------AAAAAGTTACGATATTCATTTTGCGTTTCACGAACATCAACGTAAGTTTTTGCGTACGCCTAAGAAAAAAAAAGTTCGTAAGTTTT------TCGTAGGACGCTCTTTAGTACAGGAGATAAGTAACTGGCCATAGAAACGTCAAC-----------A--C-----------GGTA---------GAGCACCTGTC--------------A--------------TTATTTTCTCGTTGC-TTT--AAATAAAA---GTTTATGCGTTGAAACTGAACACAAATGACGTCAGTTTTTAATTTACTACAAAATGACGTA-AAAAT-A-AAAAAAATACGTCAT---TCCGGTTTCGT-TTATTAACTGTTC---CAGCGCCGGTCGTAANTAATTAGTCAGTCATGAGAATTGTAAGACAAATTTATATAATATTAATCTAAATAAATTTACAGTTAATATTGCATCTAGTTTATTACTTTTTTA-TACTCTGTCGTTTATAGGAGTTAT-ACAATGAATTTTAACGTAGTAAACGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGAGAGACCTTCATTCAATAT-A---------TAAATTAAATGATAATTTAAANTAATTCAAATAATAATGAAAAT--T---------ATAACAATAAAAGTAAATGATAATCGAGATAAAATAATGAAAATGACACACTTATTTTCC-TTTTTTGGCAGCTGTGCATTTCAAACATATTGGTATAAGT------------TACTACTACTACTACTACTACTTCTACTAATGCTGANNNNNNNNNNNNNNNNGCTGCTGATGATGATACTAATAACAATATATAGTCATTTAAATTAAAGTACGATGATAATAATGATAATAAAATGAATCT
Reference ( family-2266 ) : GTGCCGTTTCACGAAACATCGTAAACTTACGTAAAAAATTATCGTAAG-TTTT---TA-ACNTACGA----------AAAAAGTTACGATATTCATTTTGCGTTTCACGAACATCAACGTAAGTTTTTGCGTANGCCTAAGAAAAAAAAANTTCGTAAGTTTT------TCGTAGGACGCTCTTTAGTACAGGAGATAAGTAACTGGCCATAGAAACGTCGAC-----------A--C-----------GGTA---------GAGCACCTGTC--------------A--------------TTATTTTCTCGTTGC-TTT--AAATAAAA---GTTTATGCGTTGAAACTGAACACAAATGACGTCAGTTTTTAATTTACTACAAAATGNCGTANAAAAT-A-AAAAAAATACGTCAT---TCCAGTTTCGT-TTATTAACTGTTC---CAGCGCCGGTCGTAANTAATTAGTCAGTCATGAGAATTGTAAGACAAATTTATATAATATTAATCTAAATAAATTTACAGTTAATACTGCATCTAGTTTATTACTTTTTTA-TACTCTGTCGTNTATAGGAGTTAT-ACAATGAATTTTAACGTAGTAAACGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGGGAGACCTTCATTCAATATAA---------TAAATTAAATGATAATTTANGATAATTCAAATAATAATGAAAAT--T---------ATNACAATAAAAGTAAATGATAATCGAGATAAAATAATGAAAATGACACACTTATTTTCC-TTTTTTGGCAGCTGTGCATTTCAAACATATTGGTATAAGT------------NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCTGCTGATGATGATACTAATAACAATATATAGTCATTTAAATTAAAGTACGATGATAATAATGATAATAAAATGAATCT
gi|1 : GTGCCGTTCCACGAAACATCATAAACTTACGTAAAAAATTATCGTCAG-TTTT---TA-ACATACGA----------AAAAAGTTACGATATTCATTTTGCGTTTCACGAACATCAACGTAAGTTTTTGCGTACGCCTAAAAAAAAAAAAGTTCGTAAGTTTT------TCGTAGGACGCTCTTTAGTACAGGAGATAAGTAACTGGCCATAGAAACGTCAAC-----------A--C-----------GGTA---------GAGCACCTGTC--------------A--------------TTATTTTCTC------------AATAAAA---GTTTATGAGTTGAAACTGAACACAAATGACGTCAGTTTTTAATTTACTACAAAATGACGTA-AAAAT-ACAAAAAAATACGTCAT---TTCAGTTTCAT-TTATTAACTGTTT---CAGTGCCGATC--AACTAATTAATCAGTCATGAGAATTGTAAGACAAATTTATATAATATTAATCAAAATAAATTTACAGTTAATATTGCATCTAGTTTATTACTTTTTTA-TACTCTGTCGTTTATAGGAGATAT-ACAATGAATTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGAGAGACCTTCATTCAATATAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN--N---------NNNNCAATAAAAGTAAATGATATTCGAGATAAAATAATGAAAATGACACACTTATTTTCC-TTTTTTGGCAGCTGTGCATTTCAAACATATTGATATAAGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCTGATGATGATACTAATAACAATAAATAGTCATTTAAATTAAAGTACTATGATAATAATGATAATAAAATGAATCT
gi|10 : CCATTTCATGAAACATCGTAAACTTACATAAAAAATTATCGTAAG-TTTT---TA-ACTTACGA----------AAAAAGTTACTATATTC-----------CACGAACATCAATGAATGTTTTTGCGTACGCCTAAG--AAAAAAAGTTTGTAAGTTTT------ATGTAGGACACTCTTTAGTACAGGAGATAAGTAACTGGCCATAGAAACAT
gi|11 : CGTCTTACTAAACATCGTAAGCTAAGAT-AAATTTTATCGTAAGTTTTT---TT-AGTTACGATATCTTAACGAAAAACTTACG----TC------CGTCTTACCAACAATAACGTAAGTT----------------AAAAAAAA---TCGTAAGTTTTTTTTTGTCGTACGAC
gi|12 : gag---TCCGATTTTGTCTTAC-GACTCTCA---CAGCGCTGGTCGTAAATAAT--GTCAGTCATGAGAATTGTAAGACAAATTTATATAAatgata
gi|13 : gttgtagcgtgatatccttcagaccgtgagattcgccaggcaCAT---TC-GGTTTTGT-CT--TA-CGATTCTAACAGCGCTGGTCGTAAATAAC--GTCAGTCATGAAAATTGTA
gi|14 : tgtagcgtgatatccttcagaccgtgagattcgtcagaGGGGAGACCTTCATTCAATA--A---------TAAATTAAATGATATTTTAAATTAATTCAAATAATAATGAAAAT--G---------AT---AATAAAA
gi|15 : CTGATGATGATACTAATAACAATATATAGTCATTTAAATTAAAGTACGATGATAATAATGATAATAAAATGAATtgaaaa
gi|17 : CTGATGATGATGATACTAATAACAATATATAGTCATTTAAATTAAAG--------TAATAATGATAATAAAATGA
gi|19 : ATAGTCATTTAAATTAAAGTACGATGATAATAATGATAATAAAATGAAT
gi|2 : TGCCGTTTCACGAAACATCTTAAACTTACGCAAAAAATTATCGTAAG-TTTT---TA-ACTTACGA----------AAAAAGTTACGATATTCATTTTGCGTTTCACGAACATCAACGTAAGTTTTTGCGTACGCCTAAGAAAAAAAAATTTCGTAAGTTTT------TCGTAGGACGCTCTTTAGTACAGGAGATAAGTAACTGGCCATAGAAACGTCAACATCCGGCACGAA--C-----------GGTA---------GAGCACCTGTC--------------A--------------TTATTTTCTC------------AATAAAA---GTTTATGCGTTGAAACTGAACACAAATGACGTCAGTTTTTAATTTACTACAAAATGACGTAAAAAATAA-AAAAAAATACGTCAT---TTCAGTTTCAT-TTATTAACTGTTC---CAGTGCCGATC--AACTAATTAATCAGTCATGAGAATTGTAAGACAAATTTATATAATATTAATCTAAATAAATTTACAGTTAATATTGCATCTAGTTTATTACTTTTTTA-TACTCTGTCGTTTATAGGAGATAT-ACAATGAA-TTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN---------TAAATTAAATGATAATTTAAATTAATTCAAATAATAATGAAAATGATAATAAAATGATAACAATAAAAGTAAATGATAATCGAGATAAAATAATGAAAATGACACACTTATTTTCC-TTTTTTGGCAGCTGTGCATTTCAAACATATTGGTATAAG
gi|3 : AAA--A-AAAAAAATACGTCAT---TTCAGTTTCAT-TTATTAACTGTTC---CAGTGCCGATC--AACTAATTAATCAGTCATGAGAATTGTAAGACAAATTTATATAATATTAATCTAAATAAATTTACAGTTAATATTGCATCTAGTTTATTACTTTTTTA-TACTCTGTCGTTTATAGGAG-AACAACAATGAATTT
gi|3 : CAATAAAAGTAAATGATAATCGAGATACAATAATGAAAATGACACACTTATTTTTC-TTTTTTGGCAGCTGTGCATTTCAAACATATTGGTATAAGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCTGATGATGATACTAATAACAATATATAGTCATTTAAATTAAAGTACGATGATAATAATGATAATAAAATGAATCTnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncaataaaagtaaatgataatcgagatacaataatgaaaatgacacacttatttttcttttttggcagctgtgcatttcaaacatattggtataagtnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngctgatgatgatactaataacaatatatagtcatttaaattaaagtacgatgataataatgataataaaatgaatct
gi|4 : aaaaaaaaaaatacgtcatttcagtttcatttattaactgttccagtgccgatcaactaattaatcagtcatgagaattgtaagacaaatttatataatattaatctaaataaatttacagttaatattgcatctagtttattacttttttatactctgtcgtttataggagaacaacaatgaatttnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnAGATACGTCAGACATCCGGTTTTGT-CTGATGATTCTCA---CAGCGCTGGTCGTAAATAAT--GTCAGTCATGAGAATTGTAAGACAAATTTATATAATATTAATCTAAATAAATTTACAGTTAATACTGCATCTAGTTGATTACCTTTTTAATACTCTGTCGTATATAGGAGTTAT-ACAATGAATTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-GGAGAGACCTTCATTCAATAT-----------TAAATTAAATGATAATTTATGATAATTCAAATAATAATGAAAAT--T---------ATAATAATAAAAGTAAATGATAATTGAGATGAAATAAAGAAAATGACACACTTATTTTCC-TTTTTTGGCAGCTGTGCACTTCAAACATATTGGTATAAGT------------NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCTGCTGATGATGATACAAATAACAATATATAGTCATTTAAATTAAAG--------TAATAATGATAATAAAATGA
gi|5 : gcgtgatatccttcagaccgtg---CAGCGCTGGTCGTAAATAAT--GTCAGTCATGAGAACTGTAAGACAAATTTATATAATATTAATCTAAATAAATTTACAGTTAATACTGCATCTAGTTTATTACTTTTTTA-TACTATGTTGTATATAGGAGTTAT-ACAATGAATTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGGGAGACCTTCATTCAATAT-----------TAAATTAAATGATAATTTAAAATAATTCAAATAATAATGAAAAT--T---------ATTATAATAAAAGTAAATGATAATTGAGATGAAATGATGAAAATGACACAGTTATTTTCC-TTTTTTGGTAGCTGTGCACTTCAAACATATTGGTATAAGT------------TACTACTACTACTACTACTACTTCTACTAATGCTGA------------------TGATAATG---ATACAGATAACAATATATAGTCATTTAAATTAAAG--------TAATAATGA
gi|6 : aGTGCCTTTTCATGAAAAATCGTAAACTTACGAAAAAAAGTAT--TCA--TTTTGCATAGGCCTAAGA----------AAAAA
gi|6 : gtccaggTTTTGCATAGGCCTAAGAAAAAAAA-GTTCGTGATTTTT------TCGTAGGATACTCTTTAGTACAGGAGATAAGTAACTGGCCATAGAAATGTCAAC-----------A--TCTGGCATGAATGGTA---------GAGCACCTGCC--------------AATCATAAATGGTTGTTATTTTCTCGTTGC-TTTGAAAATAAAA---GTATATGCGTTGAAACTGAACACAAATGACG--AGTTTTTAATTTACTACAAAATATCAT-CAAAAT-A-AAAAAAATACGTGAT---TCAAGTTTCAT-TTATTAACTGTTT---CAGTGCCGATC--AACTAATTAaagttcgtgattttttcgtaggatactctttagtacaggagataagtaactggccatagaaatgtcaacatctggcatgaatggtagagcacctgccaatcataaatggttgttattttctcgttgctttgaaaataaaagtatatgcgttgaaactgaacacaaatgacgagtttttaatttactacaaaatatcatcaaaataaaaaaaatacgtgattcaagtttcatttattaactgtttcagtgccgatcaactaattaa
gi|7 : gtccagggtgccttttcatgaaaaatcgtaaacttacgaaaaaaagtattcaGAAGTTAT-ACAATGAATTTTAACGTAGTAAACG-NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGAGAGACATTCATTCa
gi|7 : GAGATAAAATAATGAAAATGACTCTCTTATTTTCC-TTTATTGGCAGCTGTGCATTTCAAACATATTGnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntgagataaaataatgaaaatgactctcttattttcctttattggcagctgtgcatttcaaacatattg
gi|8 : gaagttatacaatgaattttaacgtagtaaacgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnggagagacattcattcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntAAAAAAT------ACA-TTTT---TA-ACTTACGA----------AAACAGTTA-----TTTATTTTGCATTTCACGAACATCAACGTAATTTTTTG
gi|8 : CGTAA-TTTT------TTG-AGAGTACTCTTTAGTACAGGAGATAAGTAAATTGCCATAGCAACGTCGAT-----------ATCC-----------GGCAAAAATGGCGGAGCACCTGTCAAACATAAATGGTTA--------------TTATTTGCTCATTGCTTTT--AAATAAAACATATTTAAGCGTTGAAACagagtactctttagtacaggagataagtaaattgccatagcaacgtcgatatccggcaaaaatggcggagcacctgtcaaacataaatggttattatttgctcattgcttttaaataaaacatatttaagcgttgaaac
gi|9 : aaaaaatacatttttaacttacgaaaacagttatttattttgcatttcacgaacatcaaAAAT--G---------ATAATAATAAAAGTAAATGATAATCGAGATAAAATAATGAAAATGACACACTTATTTTCCTTTTTTTGGCAGCTGTGCATTTCAAACATATTGGTATAAGT------------------------------NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCTGATGATGATGATACTAATAACAATATATAGTCATTTAAATTAAAG--------TAATAATGATAATAAAATGA
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|16 ): TTATTGCTACTAGTACCAACACTTCTAATGCTGATGATAACGATAACAACTAGCATTGCATTGACATTAAACT
Unaligned ( gi|18 ): GTGTAGCGTGATATCCTACAGACCGTGAGATACGTCAGACATCCGGTTTTGTCTTACGAGTCTTA
Alignments
lowQualScore : 11111111111111111111111111111 1111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 111 2222222222 11111 1 111111 999999999999999999999999999999999999999 00000000000000000000000000000 666666666666 111 1 1111 111 1111 11 11 8888888888888888888888888888888888888888888888888888888888888888888888 555555555555 333333333333 2222222222222222222222222222222222222222222222222222222222222222 33333333
lowQualScore : 2 77 111 6 9999999999 666 33333 0 0 2 999999 999999999999999999999999999999999999999 88888888888888888888888888888 555555555555 777 7 3 4444 000 0 5 00 0000 88 1 88 8 1 7 6 5555555555555555555555555555555555555555555555555555555555555555555555 000000000000 1 666666666666 5 7777777777777777777777777777777777777777777777777777777777777777 0 88888888
lowQualScore : . .. ... . .......... ... ..... . . . ...... ....................................... ............................. ............ ... . . .... ... . . .. .... .. . .. . . . . ...................................................................... ............ . ............ . ................................................................ . ........
lowQualScore : 5 77 777 7 2222222222 888 00000 8 6 5 222222 555555555555555555555555555555555555555 55555555555555555555555555555 888888888888 555 3 3 2222 000 7 7 44 5555 00 0 55 0 4 8 7 6666666666666666666666666666666666666666666666666666666666666666666666 444444444444 0 555555555555 7 1111111111111111111111111111111111111111111111111111111111111111 7 11111111
consensus : GTGCCGTTTCACGAAACATCGTAAACTTACGTAAAAAATTATCGTAAG-TTTT---TA-ACTTACGA----------AAAAAGTTACGATATTCATTTTGCGTTTCACGAACATCAACGTAAGTTTTTGCGTACGCCTAAGAAAAAAAAAGTTCGTAAGTTTT------TCGTAGGACGCTCTTTAGTACAGGAGATAAGTAACTGGCCATAGAAACGTCAAC-----------A--C-----------GGTA---------GAGCACCTGTC--------------A--------------TTATTTTCTCGTTGC-TTT--AAATAAAA---GTTTATGCGTTGAAACTGAACACAAATGACGTCAGTTTTTAATTTACTACAAAATGACGT-AAAAAT-A-AAAAAAATACGTCAT---TCCGGTTTCGT-TTATTAACTGTTC---CAGCGCCGGTCGTAANTAATTAGTCAGTCATGAGAATTGTAAGACAAATTTATATAATATTAATCTAAATAAATTTACAGTTAATATTGCATCTAGTTTATTACTTTTTTA-TACTCTGTCGTTTATAGGAGTTAT-ACAATGAATTTTAACGTAGTAAACGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGAGAGACCTTCATTCAATATA----------TAAATTAAATGATAATTTAAANTAATTCAAATAATAATGAAAAT--T---------ATAACAATAAAAGTAAATGATAATCGAGATAAAATAATGAAAATGACACACTTATTTTCC-TTTTTTGGCAGCTGTGCATTTCAAACATATTGGTATAAGT------------TACTGCTACTANTACCANCACTTCTACTAATGCTGANNNNNNNNNNNNNNNNGCTGCTGATGATGATACTAATAACAATATATAGTCATTTAAATTAAAGTACGATGATAATAATGATAATAAAATGAATCT
Reference ( family-2266 ) : GTGCCGTTTCACGAAACATCGTAAACTTACGTAAAAAATTATCGTAAG-TTTT---TA-ACTTACGA----------AAAAAGTTACGATATTCATTTTGCGTTTCACGAACATCAACGTAAGTTTTTGCGTACGCCTAAGAAAAAAAAAGTTCGTAAGTTTT------TCGTAGGACGCTCTTTAGTACAGGAGATAAGTAACTGGCCATAGAAACGTCAAC-----------A--C-----------GGTA---------GAGCACCTGTC--------------A--------------TTATTTTCTCGTTGC-TTT--AAATAAAA---GTTTATGCGTTGAAACTGAACACAAATGACGTCAGTTTTTAATTTACTACAAAATGACGT-AAAAAT-A-AAAAAAATACGTCAT---TCCGGTTTCGT-TTATTAACTGTTC---CAGCGCCGGTCGTAANTAATTAGTCAGTCATGAGAATTGTAAGACAAATTTATATAATATTAATCTAAATAAATTTACAGTTAATATTGCATCTAGTTTATTACTTTTTTA-TACTCTGTCGTTTATAGGAGTTAT-ACAATGAATTTTAACGTAGTAAACGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGAGAGACCTTCATTCAATATA----------TAAATTAAATGATAATTTAAANTAATTCAAATAATAATGAAAAT--T---------ATAACAATAAAAGTAAATGATAATCGAGATAAAATAATGAAAATGACACACTTATTTTCC-TTTTTTGGCAGCTGTGCATTTCAAACATATTGGTATAAGT------------TACTACTACTACTACTACTACTTCTACTAATGCTGANNNNNNNNNNNNNNNNGCTGCTGATGATGATACTAATAACAATATATAGTCATTTAAATTAAAGTACGATGATAATAATGATAATAAAATGAATCT
gi|1 : GTGCCGTTCCACGAAACATCATAAACTTACGTAAAAAATTATCGTCAG-TTTT---TA-ACATACGA----------AAAAAGTTACGATATTCATTTTGCGTTTCACGAACATCAACGTAAGTTTTTGCGTACGCCTAAAAAAAAAAAAGTTCGTAAGTTTT------TCGTAGGACGCTCTTTAGTACAGGAGATAAGTAACTGGCCATAGAAACGTCAAC-----------A--C-----------GGTA---------GAGCACCTGTC--------------A--------------TTATTTTCTC------------AATAAAA---GTTTATGAGTTGAAACTGAACACAAATGACGTCAGTTTTTAATTTACTACAAAATGACGT-AAAAAT-ACAAAAAAATACGTCAT---TTCAGTTTCAT-TTATTAACTGTTT---CAGTGCCGATC--AACTAATTAATCAGTCATGAGAATTGTAAGACAAATTTATATAATATTAATCAAAATAAATTTACAGTTAATATTGCATCTAGTTTATTACTTTTTTA-TACTCTGTCGTTTATAGGAGATAT-ACAATGAATTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGAGAGACCTTCATTCAATATAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN--N---------NNNNCAATAAAAGTAAATGATATTCGAGATAAAATAATGAAAATGACACACTTATTTTCC-TTTTTTGGCAGCTGTGCATTTCAAACATATTGATATAAGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCTGATGATGATACTAATAACAATAAATAGTCATTTAAATTAAAGTACTATGATAATAATGATAATAAAATGAATCT
gi|10 : CCATTTCATGAAACATCGTAAACTTACATAAAAAATTATCGTAAG-TTTT---TA-ACTTACGA----------AAAAAGTTACTATATTC-----------CACGAACATCAATGAATGTTTTTGCGTACGCCTAAG--AAAAAAAGTTTGTAAGTTTT------ATGTAGGACACTCTTTAGTACAGGAGATAAGTAACTGGCCATAGAAACAT
gi|11 : CGTCTTACTAAACATCGTAAGCTAAGAT-AAATTTTATCGTAAGTTTTT---TT-AGTTACGATATCTTAACGAAAAACTTACG----TC------CGTCTTACCAACAATAACGTAAGTT----------------AAAAAAAA---TCGTAAGTTTTTTTTTGTCGTACGAC
gi|12 : gag---TCCGATTTTGTCTTAC-GACTCTCA---CAGCGCTGGTCGTAAATAAT--GTCAGTCATGAGAATTGTAAGACAAATTTATATAAatgata
gi|13 : gttgtagcgtgatatccttcagaccgtgagattcgccaggcaCAT---TC-GGTTTTGT-CT--TA-CGATTCTAACAGCGCTGGTCGTAAATAAC--GTCAGTCATGAAAATTGTA
gi|14 : tgtagcgtgatatccttcagaccgtgagattcgtcagaGGGGAGACCTTCATTCAATA-A----------TAAATTAAATGATATTTTAAATTAATTCAAATAATAATGAAAAT--G---------ATAATAA
gi|15 : CTGATGATGATACTAATAACAATATATAGTCATTTAAATTAAAGTACGATGATAATAATGATAATAAAATGAATaatgaaaa
gi|16 : T------------TATTGCTACTAGTACCAACACTTC---TAATGCTGA
gi|17 : CTGATGATGATGATACTAATAACAATATATAGTCATTTAAATTAAAG--------TAATAATGATAATAAAATGAtgataacgataacaactagcattgcattgacattaaact
gi|19 : ATAGTCATTTAAATTAAAGTACGATGATAATAATGATAATAAAATGAAT
gi|2 : TGCCGTTTCACGAAACATCTTAAACTTACGCAAAAAATTATCGTAAG-TTTT---TA-ACTTACGA----------AAAAAGTTACGATATTCATTTTGCGTTTCACGAACATCAACGTAAGTTTTTGCGTACGCCTAAGAAAAAAAAATTTCGTAAGTTTT------TCGTAGGACGCTCTTTAGTACAGGAGATAAGTAACTGGCCATAGAAACGTCAACATCCGGCACGAA--C-----------GGTA---------GAGCACCTGTC--------------A--------------TTATTTTCTC------------AATAAAA---GTTTATGCGTTGAAACTGAACACAAATGACGTCAGTTTTTAATTTACTACAAAATGACGTAAAAAATAA-AAAAAAATACGTCAT---TTCAGTTTCAT-TTATTAACTGTTC---CAGTGCCGATC--AACTAATTAATCAGTCATGAGAATTGTAAGACAAATTTATATAATATTAATCTAAATAAATTTACAGTTAATATTGCATCTAGTTTATTACTTTTTTA-TACTCTGTCGTTTATAGGAGATAT-ACAATGAATTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN----------TAAATTAAATGATAATTTAAATTAATTCAAATAATAATGAAAATGATAATAAAATGATAACAATAAAAGTAAATGATAATCGAGATAAAATAATGAAAATGACACACTTATTTTCC-TTTTTTGGCAGCTGTGCATTTCAAACATATTGGTATAAG
gi|3 : AAA--A-AAAAAAATACGTCAT---TTCAGTTTCAT-TTATTAACTGTTC---CAGTGCCGATC--AACTAATTAATCAGTCATGAGAATTGTAAGACAAATTTATATAATATTAATCTAAATAAATTTACAGTTAATATTGCATCTAGTTTATTACTTTTTTA-TACTCTGTCGTTTATAGGAG-AACAACAATGAATTT
gi|3 : CAATAAAAGTAAATGATAATCGAGATACAATAATGAAAATGACACACTTATTTTTC-TTTTTTGGCAGCTGTGCATTTCAAACATATTGGTATAAGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCTGATGATGATACTAATAACAATATATAGTCATTTAAATTAAAGTACGATGATAATAATGATAATAAAATGAATCTnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncaataaaagtaaatgataatcgagatacaataatgaaaatgacacacttatttttcttttttggcagctgtgcatttcaaacatattggtataagtnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngctgatgatgatactaataacaatatatagtcatttaaattaaagtacgatgataataatgataataaaatgaatct
gi|4 : aaaaaaaaaaatacgtcatttcagtttcatttattaactgttccagtgccgatcaactaattaatcagtcatgagaattgtaagacaaatttatataatattaatctaaataaatttacagttaatattgcatctagtttattacttttttatactctgtcgtttataggagaacaacaatgaatttnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnAGATACGTCAGACATCCGGTTTTGT-CTGATGATTCTCA---CAGCGCTGGTCGTAAATAAT--GTCAGTCATGAGAATTGTAAGACAAATTTATATAATATTAATCTAAATAAATTTACAGTTAATACTGCATCTAGTTGATTACCTTTTTAATACTCTGTCGTATATAGGAGTTAT-ACAATGAATTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-GGAGAGACCTTCATTCAATAT-----------TAAATTAAATGATAATTTATGATAATTCAAATAATAATGAAAAT--T---------ATAATAATAAAAGTAAATGATAATTGAGATGAAATAAAGAAAATGACACACTTATTTTCC-TTTTTTGGCAGCTGTGCACTTCAAACATATTGGTATAAGT------------NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCTGCTGATGATGATACAAATAACAATATATAGTCATTTAAATTAAAG--------TAATAATGATAATAAAATGA
gi|5 : gcgtgatatccttcagaccgtg---CAGCGCTGGTCGTAAATAAT--GTCAGTCATGAGAACTGTAAGACAAATTTATATAATATTAATCTAAATAAATTTACAGTTAATACTGCATCTAGTTTATTACTTTTTTA-TACTATGTTGTATATAGGAGTTAT-ACAATGAATTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGGGAGACCTTCATTCAATAT-----------TAAATTAAATGATAATTTAAAATAATTCAAATAATAATGAAAAT--T---------ATTATAATAAAAGTAAATGATAATTGAGATGAAATGATGAAAATGACACAGTTATTTTCC-TTTTTTGGTAGCTGTGCACTTCAAACATATTGGTATAAGT------------TACTACTACTACTACTACTACTTCTACTAATGCTGA---------------------TGATAATGATACAGATAACAATATATAGTCATTTAAATTAAAG--------TAATAATGA
gi|6 : aGTGCCTTTTCATGAAAAATCGTAAACTTACGAAAAAAAGTAT--TCA--TTTTGCATAGGCCTAAGA----------AAAAA
gi|6 : gtccaggTTTTGCATAGGCCTAAGAAAAAAAA-GTTCGTGATTTTT------TCGTAGGATACTCTTTAGTACAGGAGATAAGTAACTGGCCATAGAAATGTCAAC-----------A--TCTGGCATGAATGGTA---------GAGCACCTGCC--------------AATCATAAATGGTTGTTATTTTCTCGTTGC-TTTGAAAATAAAA---GTATATGCGTTGAAACTGAACACAAATGACG--AGTTTTTAATTTACTACAAAATATCAT-CAAAAT-A-AAAAAAATACGTGAT---TCAAGTTTCAT-TTATTAACTGTTT---CAGTGCCGATC--AACTAATTAaagttcgtgattttttcgtaggatactctttagtacaggagataagtaactggccatagaaatgtcaacatctggcatgaatggtagagcacctgccaatcataaatggttgttattttctcgttgctttgaaaataaaagtatatgcgttgaaactgaacacaaatgacgagtttttaatttactacaaaatatcatcaaaataaaaaaaatacgtgattcaagtttcatttattaactgtttcagtgccgatcaactaattaa
gi|7 : gtccagggtgccttttcatgaaaaatcgtaaacttacgaaaaaaagtattcaGAAGTTAT-ACAATGAATTTTAACGTAGTAAACG-NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGAGAGACATTCATTCa
gi|7 : GAGATAAAATAATGAAAATGACTCTCTTATTTTCC-TTTATTGGCAGCTGTGCATTTCAAACATATTGnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntgagataaaataatgaaaatgactctcttattttcctttattggcagctgtgcatttcaaacatattg
gi|8 : gaagttatacaatgaattttaacgtagtaaacgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnggagagacattcattcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntAAAAAAT------ACA-TTTT---TA-ACTTACGA----------AAACAGTTA-----TTTATTTTGCATTTCACGAACATCAACGTAATTTTTTG
gi|8 : CGTAA-TTTT------TTG-AGAGTACTCTTTAGTACAGGAGATAAGTAAATTGCCATAGCAACGTCGAT-----------ATCC-----------GGCAAAAATGGCGGAGCACCTGTCAAACATAAATGGTTA--------------TTATTTGCTCATTGCTTTT--AAATAAAACATATTTAAGCGTTGAAACagagtactctttagtacaggagataagtaaattgccatagcaacgtcgatatccggcaaaaatggcggagcacctgtcaaacataaatggttattatttgctcattgcttttaaataaaacatatttaagcgttgaaac
gi|9 : aaaaaatacatttttaacttacgaaaacagttatttattttgcatttcacgaacatcaaAAAT--G---------ATAATAATAAAAGTAAATGATAATCGAGATAAAATAATGAAAATGACACACTTATTTTCCTTTTTTTGGCAGCTGTGCATTTCAAACATATTGGTATAAGT------------------------------NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCTGATGATGATGATACTAATAACAATATATAGTCATTTAAATTAAAG--------TAATAATGATAATAAAATGA
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|18 ): GTGTAGCGTGATATCCTACAGACCGTGAGATACGTCAGACATCCGGTTTTGTCTTACGAGTCTTA
Alignments
lowQualScore : 11111111111111111111111111111 1111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 111 2222222222 11111 1 111111 999999999999999999999999999999999999999 00000000000000000000000000000 666666666666 111 1 1111 111 1111 11 11 8888888888888888888888888888888888888888888888888888888888888888888888 555555555555 333333333333 2222222222222222222222222222222222222222222222222222222222222222 33333333
lowQualScore : 2 77 111 6 9999999999 666 33333 0 0 2 999999 999999999999999999999999999999999999999 88888888888888888888888888888 555555555555 777 7 3 4444 000 0 5 00 0000 88 1 88 8 1 7 6 5555555555555555555555555555555555555555555555555555555555555555555555 000000000000 1 666666666666 5 5555555555555555555555555555555555555555555555555555555555555555 0 88888888
lowQualScore : . .. ... . .......... ... ..... . . . ...... ....................................... ............................. ............ ... . . .... ... . . .. .... .. . .. . . . . ...................................................................... ............ . ............ . ................................................................ . ........
lowQualScore : 5 77 777 7 2222222222 888 00000 8 6 5 222222 555555555555555555555555555555555555555 55555555555555555555555555555 888888888888 555 3 3 2222 000 7 7 44 5555 00 0 55 0 4 8 7 6666666666666666666666666666666666666666666666666666666666666666666666 444444444444 0 555555555555 7 6666666666666666666666666666666666666666666666666666666666666666 7 11111111
consensus : GTGCCGTTTCACGAAACATCGTAAACTTACGTAAAAAATTATCGTAAG-TTTT---TA-ACTTACGA----------AAAAAGTTACGATATTCATTTTGCGTTTCACGAACATCAACGTAAGTTTTTGCGTACGCCTAAGAAAAAAAAAGTTCGTAAGTTTT------TCGTAGGACGCTCTTTAGTACAGGAGATAAGTAACTGGCCATAGAAACGTCAAC-----------A--C-----------GGTA---------GAGCACCTGTC--------------A--------------TTATTTTCTCGTTGC-TTT--AAATAAAA---GTTTATGCGTTGAAACTGAACACAAATGACGTCAGTTTTTAATTTACTACAAAATGACGT-AAAAAT-A-AAAAAAATACGTCAT---TCCGGTTTCGT-TTATTAACTGTTC---CAGCGCCGGTCGTAANTAATTAGTCAGTCATGAGAATTGTAAGACAAATTTATATAATATTAATCTAAATAAATTTACAGTTAATATTGCATCTAGTTTATTACTTTTTTA-TACTCTGTCGTTTATAGGAGTTAT-ACAATGAATTTTAACGTAGTAAACGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGAGAGACCTTCATTCAATATA----------TAAATTAAATGATAATTTAAANTAATTCAAATAATAATGAAAAT--T---------ATAACAATAAAAGTAAATGATAATCGAGATAAAATAATGAAAATGACACACTTATTTTCC-TTTTTTGGCAGCTGTGCATTTCAAACATATTGGTATAAGT------------TACTGCTACTANTACCANCACTTCTACTAATGCTGANNNNNNNNNNNNNNNNGCTGCTGATGATGATACTAATAACAATATATAGTCATTTAAATTAAAGTACGATGATAATAATGATAATAAAATGAATCT
Reference ( family-2266 ) : GTGCCGTTTCACGAAACATCGTAAACTTACGTAAAAAATTATCGTAAG-TTTT---TA-ACTTACGA----------AAAAAGTTACGATATTCATTTTGCGTTTCACGAACATCAACGTAAGTTTTTGCGTACGCCTAAGAAAAAAAAAGTTCGTAAGTTTT------TCGTAGGACGCTCTTTAGTACAGGAGATAAGTAACTGGCCATAGAAACGTCAAC-----------A--C-----------GGTA---------GAGCACCTGTC--------------A--------------TTATTTTCTCGTTGC-TTT--AAATAAAA---GTTTATGCGTTGAAACTGAACACAAATGACGTCAGTTTTTAATTTACTACAAAATGACGT-AAAAAT-A-AAAAAAATACGTCAT---TCCGGTTTCGT-TTATTAACTGTTC---CAGCGCCGGTCGTAANTAATTAGTCAGTCATGAGAATTGTAAGACAAATTTATATAATATTAATCTAAATAAATTTACAGTTAATATTGCATCTAGTTTATTACTTTTTTA-TACTCTGTCGTTTATAGGAGTTAT-ACAATGAATTTTAACGTAGTAAACGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGAGAGACCTTCATTCAATATA----------TAAATTAAATGATAATTTAAANTAATTCAAATAATAATGAAAAT--T---------ATAACAATAAAAGTAAATGATAATCGAGATAAAATAATGAAAATGACACACTTATTTTCC-TTTTTTGGCAGCTGTGCATTTCAAACATATTGGTATAAGT------------TACTGCTACTANTACCANCACTTCTACTAATGCTGANNNNNNNNNNNNNNNNGCTGCTGATGATGATACTAATAACAATATATAGTCATTTAAATTAAAGTACGATGATAATAATGATAATAAAATGAATCT
gi|1 : GTGCCGTTCCACGAAACATCATAAACTTACGTAAAAAATTATCGTCAG-TTTT---TA-ACATACGA----------AAAAAGTTACGATATTCATTTTGCGTTTCACGAACATCAACGTAAGTTTTTGCGTACGCCTAAAAAAAAAAAAGTTCGTAAGTTTT------TCGTAGGACGCTCTTTAGTACAGGAGATAAGTAACTGGCCATAGAAACGTCAAC-----------A--C-----------GGTA---------GAGCACCTGTC--------------A--------------TTATTTTCTC------------AATAAAA---GTTTATGAGTTGAAACTGAACACAAATGACGTCAGTTTTTAATTTACTACAAAATGACGT-AAAAAT-ACAAAAAAATACGTCAT---TTCAGTTTCAT-TTATTAACTGTTT---CAGTGCCGATC--AACTAATTAATCAGTCATGAGAATTGTAAGACAAATTTATATAATATTAATCAAAATAAATTTACAGTTAATATTGCATCTAGTTTATTACTTTTTTA-TACTCTGTCGTTTATAGGAGATAT-ACAATGAATTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGAGAGACCTTCATTCAATATAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN--N---------NNNNCAATAAAAGTAAATGATATTCGAGATAAAATAATGAAAATGACACACTTATTTTCC-TTTTTTGGCAGCTGTGCATTTCAAACATATTGATATAAGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCTGATGATGATACTAATAACAATAAATAGTCATTTAAATTAAAGTACTATGATAATAATGATAATAAAATGAATCT
gi|10 : CCATTTCATGAAACATCGTAAACTTACATAAAAAATTATCGTAAG-TTTT---TA-ACTTACGA----------AAAAAGTTACTATATTC-----------CACGAACATCAATGAATGTTTTTGCGTACGCCTAAG--AAAAAAAGTTTGTAAGTTTT------ATGTAGGACACTCTTTAGTACAGGAGATAAGTAACTGGCCATAGAAACAT
gi|11 : CGTCTTACTAAACATCGTAAGCTAAGAT-AAATTTTATCGTAAGTTTTT---TT-AGTTACGATATCTTAACGAAAAACTTACG----TC------CGTCTTACCAACAATAACGTAAGTT----------------AAAAAAAA---TCGTAAGTTTTTTTTTGTCGTACGAC
gi|12 : gag---TCCGATTTTGTCTTAC-GACTCTCA---CAGCGCTGGTCGTAAATAAT--GTCAGTCATGAGAATTGTAAGACAAATTTATATAAatgata
gi|13 : gttgtagcgtgatatccttcagaccgtgagattcgccaggcaCAT---TC-GGTTTTGT-CT--TA-CGATTCTAACAGCGCTGGTCGTAAATAAC--GTCAGTCATGAAAATTGTA
gi|14 : tgtagcgtgatatccttcagaccgtgagattcgtcagaGGGGAGACCTTCATTCAATA-A----------TAAATTAAATGATATTTTAAATTAATTCAAATAATAATGAAAAT--G---------ATAATAA
gi|15 : CTGATGATGATACTAATAACAATATATAGTCATTTAAATTAAAGTACGATGATAATAATGATAATAAAATGAATaatgaaaa
gi|16 : T------------TATTGCTACTAGTACCAACACTT---CTAATGCTGA
gi|17 : CTGATGATGATGATACTAATAACAATATATAGTCATTTAAATTAAAG--------TAATAATGATAATAAAATGAtgataacgataacaactagcattgcattgacattaaact
gi|19 : ATAGTCATTTAAATTAAAGTACGATGATAATAATGATAATAAAATGAAT
gi|2 : TGCCGTTTCACGAAACATCTTAAACTTACGCAAAAAATTATCGTAAG-TTTT---TA-ACTTACGA----------AAAAAGTTACGATATTCATTTTGCGTTTCACGAACATCAACGTAAGTTTTTGCGTACGCCTAAGAAAAAAAAATTTCGTAAGTTTT------TCGTAGGACGCTCTTTAGTACAGGAGATAAGTAACTGGCCATAGAAACGTCAACATCCGGCACGAA--C-----------GGTA---------GAGCACCTGTC--------------A--------------TTATTTTCTC------------AATAAAA---GTTTATGCGTTGAAACTGAACACAAATGACGTCAGTTTTTAATTTACTACAAAATGACGTAAAAAATAA-AAAAAAATACGTCAT---TTCAGTTTCAT-TTATTAACTGTTC---CAGTGCCGATC--AACTAATTAATCAGTCATGAGAATTGTAAGACAAATTTATATAATATTAATCTAAATAAATTTACAGTTAATATTGCATCTAGTTTATTACTTTTTTA-TACTCTGTCGTTTATAGGAGATAT-ACAATGAATTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN----------TAAATTAAATGATAATTTAAATTAATTCAAATAATAATGAAAATGATAATAAAATGATAACAATAAAAGTAAATGATAATCGAGATAAAATAATGAAAATGACACACTTATTTTCC-TTTTTTGGCAGCTGTGCATTTCAAACATATTGGTATAAG
gi|3 : AAA--A-AAAAAAATACGTCAT---TTCAGTTTCAT-TTATTAACTGTTC---CAGTGCCGATC--AACTAATTAATCAGTCATGAGAATTGTAAGACAAATTTATATAATATTAATCTAAATAAATTTACAGTTAATATTGCATCTAGTTTATTACTTTTTTA-TACTCTGTCGTTTATAGGAG-AACAACAATGAATTT
gi|3 : CAATAAAAGTAAATGATAATCGAGATACAATAATGAAAATGACACACTTATTTTTC-TTTTTTGGCAGCTGTGCATTTCAAACATATTGGTATAAGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCTGATGATGATACTAATAACAATATATAGTCATTTAAATTAAAGTACGATGATAATAATGATAATAAAATGAATCTnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncaataaaagtaaatgataatcgagatacaataatgaaaatgacacacttatttttcttttttggcagctgtgcatttcaaacatattggtataagtnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngctgatgatgatactaataacaatatatagtcatttaaattaaagtacgatgataataatgataataaaatgaatct
gi|4 : aaaaaaaaaaatacgtcatttcagtttcatttattaactgttccagtgccgatcaactaattaatcagtcatgagaattgtaagacaaatttatataatattaatctaaataaatttacagttaatattgcatctagtttattacttttttatactctgtcgtttataggagaacaacaatgaatttnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnAGATACGTCAGACATCCGGTTTTGT-CTGATGATTCTCA---CAGCGCTGGTCGTAAATAAT--GTCAGTCATGAGAATTGTAAGACAAATTTATATAATATTAATCTAAATAAATTTACAGTTAATACTGCATCTAGTTGATTACCTTTTTAATACTCTGTCGTATATAGGAGTTAT-ACAATGAATTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-GGAGAGACCTTCATTCAATAT-----------TAAATTAAATGATAATTTATGATAATTCAAATAATAATGAAAAT--T---------ATAATAATAAAAGTAAATGATAATTGAGATGAAATAAAGAAAATGACACACTTATTTTCC-TTTTTTGGCAGCTGTGCACTTCAAACATATTGGTATAAGT------------NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCTGCTGATGATGATACAAATAACAATATATAGTCATTTAAATTAAAG--------TAATAATGATAATAAAATGA
gi|5 : gcgtgatatccttcagaccgtg---CAGCGCTGGTCGTAAATAAT--GTCAGTCATGAGAACTGTAAGACAAATTTATATAATATTAATCTAAATAAATTTACAGTTAATACTGCATCTAGTTTATTACTTTTTTA-TACTATGTTGTATATAGGAGTTAT-ACAATGAATTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGGGAGACCTTCATTCAATAT-----------TAAATTAAATGATAATTTAAAATAATTCAAATAATAATGAAAAT--T---------ATTATAATAAAAGTAAATGATAATTGAGATGAAATGATGAAAATGACACAGTTATTTTCC-TTTTTTGGTAGCTGTGCACTTCAAACATATTGGTATAAGT------------TACTACTACTACTACTACTACTTCTACTAATGCTGA---------------------TGATAATGATACAGATAACAATATATAGTCATTTAAATTAAAG--------TAATAATGA
gi|6 : aGTGCCTTTTCATGAAAAATCGTAAACTTACGAAAAAAAGTAT--TCA--TTTTGCATAGGCCTAAGA----------AAAAA
gi|6 : gtccaggTTTTGCATAGGCCTAAGAAAAAAAA-GTTCGTGATTTTT------TCGTAGGATACTCTTTAGTACAGGAGATAAGTAACTGGCCATAGAAATGTCAAC-----------A--TCTGGCATGAATGGTA---------GAGCACCTGCC--------------AATCATAAATGGTTGTTATTTTCTCGTTGC-TTTGAAAATAAAA---GTATATGCGTTGAAACTGAACACAAATGACG--AGTTTTTAATTTACTACAAAATATCAT-CAAAAT-A-AAAAAAATACGTGAT---TCAAGTTTCAT-TTATTAACTGTTT---CAGTGCCGATC--AACTAATTAaagttcgtgattttttcgtaggatactctttagtacaggagataagtaactggccatagaaatgtcaacatctggcatgaatggtagagcacctgccaatcataaatggttgttattttctcgttgctttgaaaataaaagtatatgcgttgaaactgaacacaaatgacgagtttttaatttactacaaaatatcatcaaaataaaaaaaatacgtgattcaagtttcatttattaactgtttcagtgccgatcaactaattaa
gi|7 : gtccagggtgccttttcatgaaaaatcgtaaacttacgaaaaaaagtattcaGAAGTTAT-ACAATGAATTTTAACGTAGTAAACG-NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGAGAGACATTCATTCa
gi|7 : GAGATAAAATAATGAAAATGACTCTCTTATTTTCC-TTTATTGGCAGCTGTGCATTTCAAACATATTGnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntgagataaaataatgaaaatgactctcttattttcctttattggcagctgtgcatttcaaacatattg
gi|8 : gaagttatacaatgaattttaacgtagtaaacgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnggagagacattcattcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntAAAAAAT------ACA-TTTT---TA-ACTTACGA----------AAACAGTTA-----TTTATTTTGCATTTCACGAACATCAACGTAATTTTTTG
gi|8 : CGTAA-TTTT------TTG-AGAGTACTCTTTAGTACAGGAGATAAGTAAATTGCCATAGCAACGTCGAT-----------ATCC-----------GGCAAAAATGGCGGAGCACCTGTCAAACATAAATGGTTA--------------TTATTTGCTCATTGCTTTT--AAATAAAACATATTTAAGCGTTGAAACagagtactctttagtacaggagataagtaaattgccatagcaacgtcgatatccggcaaaaatggcggagcacctgtcaaacataaatggttattatttgctcattgcttttaaataaaacatatttaagcgttgaaac
gi|9 : aaaaaatacatttttaacttacgaaaacagttatttattttgcatttcacgaacatcaaAAAT--G---------ATAATAATAAAAGTAAATGATAATCGAGATAAAATAATGAAAATGACACACTTATTTTCCTTTTTTTGGCAGCTGTGCATTTCAAACATATTGGTATAAGT------------------------------NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCTGATGATGATGATACTAATAACAATATATAGTCATTTAAATTAAAG--------TAATAATGATAATAAAATGA
blockSeqs : C GT GCA G TATCTTAACG ATA ATTTT A G TTTTTG ATCCGGCACGAACGGTA AATCATAAATGGTTG GTTGCTTTGAA CAT T A TAA ACA C CTAA GT A TA A T A A NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NN T GATAATAAAATG T NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN TACGATGA
blockSeqs : C G . . . ATA ATTTT A G . ATCTGGCATGAATGGTA AAACATAAATGGTTA ATTGCTTTTA . . . TA . . A GT A TA . T T . NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN A T G . NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN TACGATGA
blockSeqs : C G . . . . . . G . ATCCGGCAAAAATGGCG A . . A . . C GT C TA . A T . NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN T A T . TACTACTACTACTACTACTACTTCTACTAATGCTGA TACGATGA
blockSeqs : . A . . . . . . T . . . C GT C . . A T . NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN T A T . NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN .
blockSeqs : . . . . . . . . . A . A . . . G . .
blockSeqs : . . T . A . . .
blockSeqs : . C . .
blockSeqCons : ***** GT ** T*********** ********
originalCons : GTGCCGTTTCACGAAACATCGTAAACTTACGTAAAAAATTATCGTAAG-TTTT---TA-ACTTACGA----------AAAAAGTTACGATATTCATTTTGCGTTTCACGAACATCAACGTAAGTTTTTGCGTACGCCTAAGAAAAAAAAAGTTCGTAAGTTTT------TCGTAGGACGCTCTTTAGTACAGGAGATAAGTAACTGGCCATAGAAACGTCAAC-----------A--C-----------GGTA---------GAGCACCTGTC--------------A--------------TTATTTTCTCGTTGC-TTT--AAATAAAA---GTTTATGCGTTGAAACTGAACACAAATGACGTCAGTTTTTAATTTACTACAAAATGACGT-AAAAAT-A-AAAAAAATACGTCAT---TCCGGTTTCGT-TTATTAACTGTTC---CAGCGCCGGTCGTAANTAATTAGTCAGTCATGAGAATTGTAAGACAAATTTATATAATATTAATCTAAATAAATTTACAGTTAATATTGCATCTAGTTTATTACTTTTTTA-TACTCTGTCGTTTATAGGAGTTAT-ACAATGAATTTTAACGTAGTAAACGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGAGAGACCTTCATTCAATATA----------TAAATTAAATGATAATTTAAANTAATTCAAATAATAATGAAAAT--T---------ATAACAATAAAAGTAAATGATAATCGAGATAAAATAATGAAAATGACACACTTATTTTCC-TTTTTTGGCAGCTGTGCATTTCAAACATATTGGTATAAGT------------TACTGCTACTANTACCANCACTTCTACTAATGCTGANNNNNNNNNNNNNNNNGCTGCTGATGATGATACTAATAACAATATATAGTCATTTAAATTAAAGTACGATGATAATAATGATAATAAAATGAATCT
finalCons : GTGCCGTTTCACGAAACATCGTAAACTTACGTAAAAAATTATCGTAAG-TTTT---TA-ACTTACGA----------AAAAAGTTACGATATTC-----GCGTTTCACGAACATCAACGTAAGTTTTTGCGTACGCCTAAGAAAAAAAAAGTTCGTAAGTTTT------TCGTAGGACGCTCTTTAGTACAGGAGATAAGTAACTGGCCATAGAAACGTCAAC-----------A--C-----------GGTA---------GAGCACCTGTC--------------A--------------TTATTTTCTCGTTGC-TTT--AAATAAAA---GTTTATGCGTTGAAACTGAACACAAATGACGTCAGTTTTTAATTTACTACAAAATGACGT-AAAAAT-A-AAAAAAATACGTCAT---TCCGGTTTCGT-TTATTAACTGTTC---CAGCGCCGGTCGTAANTAAT--GTCAGTCATGAGAATTGTAAGACAAATTTATATAATATTAATCTAAATAAATTTACAGTTAATATTGCATCTAGTTTATTACTTTTTTA-TACTCTGTCGTTTATAGGAGTTAT-ACAATGAATTTTAACGTAGTAAACGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGAGAGACCTTCATTCAATAT-----------TAAATTAAATGATAATTTAAANTAATTCAAATAATAATGAAAAT--T---------ATAACAATAAAAGTAAATGATAATCGAGATAAAATAATGAAAATGACACACTTATTTTCC-TTTTTTGGCAGCTGTGCATTTCAAACATATTGGTATAAGT------------TACTGCTACTANTACCANCACTTCTACTAATGCTGANNNNNNNNNNNNNNNNGCTGCTGATGATGATACTAATAACAATATATAGTCATTTAAATTAAAG--------TAATAATGATAATAAAATGAATCT
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|18 ): GTGTAGCGTGATATCCTACAGACCGTGAGATACGTCAGACATCCGGTTTTGTCTTACGAGTCTTA
Alignments
lowQualScore : 1111111111111111111111111111111111111111111111111111111111111111111111111111 1111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 111 2222222222 1 555555 1 111111 1111111111111111111111111111111111111111111111111111111111111111111111111111 666666666666 111 1111 1 111 1111 11 22 8888888888888888888888888888888888888888888888888888888888888888888888 33333333333 333333333333 111 2222222222222222222222222222222222222222222222222222222222222222 555555555555555555
lowQualScore : 2 77 111 6 9999999999 0 8 000000 0 0 2 999999 4444444444444444444444444444444444444444444444444444444444444444444444444444 555555555555 777 7 4444 0 000 0 5 00 0000 88 1 00 8 1 7 6 6 5555555555555555555555555555555555555555555555555555555555555555555555 88888888888 1 666666666666 111 0 5 5555555555555555555555555555555555555555555555555555555555555555 0 444444444444444444
lowQualScore : . .. ... . .......... . . ...... . . . ...... ............................................................................ ............ ... . .... . ... . . .. .... .. . .. . . . . . ...................................................................... ........... . ............ ... . . ................................................................ . ..................
lowQualScore : 5 77 777 7 2222222222 6 0 000000 8 6 5 222222 8888888888888888888888888888888888888888888888888888888888888888888888888888 888888888888 555 3 2222 0 000 7 7 44 5555 00 0 66 0 4 8 7 7 6666666666666666666666666666666666666666666666666666666666666666666666 00000000000 0 555555555555 777 4 7 6666666666666666666666666666666666666666666666666666666666666666 7 555555555555555555
consensus : GTGCCGTTTCACGAAACATCGTAAACTTACGTAAAAAATTATCGTAAG-TTTT---TA-ACTTACGA----------AAAAAGTTACGATA-TTCATTTTGCGTTTCACGAACATCAACGTAAGTTTTTGCGTACGCCTAAGAAAAAAAAAGTTCGTAAGTTTT------TCGTAGGACGCTCTTTAGTACAGGAGATAAGTAACTGGCCATAGAAACGTCAACATC---------C-----------GGTA---------GAGCACCTGTC--------------A--------------TTATTTTCTCGTTGC-TTT--AAATAAAA---GTTTATGCGTTGAAACTGAACACAAATGACGTCAGTTTTTAATTTACTACAAAATGACGTAAAAA-TA-AAA-AAAATACGTCAT---TCCGGTTTCGT-TTATTAACTGTTC---CAGCGCCGGTCGTAANTAATTAGTCAGTCATGAGAATTGTAAGACAAATTTATATAATATTAATCTAAATAAATTTACAGTTAATATTGCATCTAGTTTATTACTTTTTTA-TACTCTGTCGTTTATAGGAGTTAT-ACAATGAATTT-TAACGTAGTAAACGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGAGAGACCTTCATTCAATAT-----------TAAATTAAATGATAATTTAAANTAATTCAAATAATAATGAAAAT--T---------AT---AACAATAAAAGTAAATGATAATCGAGATAAAATAATGAAAATGACACACTTATTTTCC-TTTTTTGGCAGCTGTGCATTTCAAACATATTGGTATAAGT------------TACTGCTACTANTACCANCACTTCTACTAATGCTGANNNNNNNNNNNNNNNNGCTGCTGATGATGATACTAATAACAATATATAGTCATTTAAATTAAAGTAC-ATGATA--------ATAATGATAATAAAATGAATCT
Reference ( family-2266 ) : GTGCCGTTTCACGAAACATCGTAAACTTACGTAAAAAATTATCGTAAG-TTTT---TA-ACTTACGA----------AAAAAGTTACGATA-TTC-----GCGTTTCACGAACATCAACGTAAGTTTTTGCGTACGCCTAAGAAAAAAAAAGTTCGTAAGTTTT------TCGTAGGACGCTCTTTAGTACAGGAGATAAGTAACTGGCCATAGAAACGTCAACA-----------C-----------GGTA---------GAGCACCTGTC--------------A--------------TTATTTTCTCGTTGC-TTT--AAATAAAA---GTTTATGCGTTGAAACTGAACACAAATGACGTCAGTTTTTAATTTACTACAAAATGACGTAAAAA-TA-AAA-AAAATACGTCAT---TCCGGTTTCGT-TTATTAACTGTTC---CAGCGCCGGTCGTAANTAAT--GTCAGTCATGAGAATTGTAAGACAAATTTATATAATATTAATCTAAATAAATTTACAGTTAATATTGCATCTAGTTTATTACTTTTTTA-TACTCTGTCGTTTATAGGAGTTAT-ACAATGAATTT-TAACGTAGTAAACGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGAGAGACCTTCATTCAATAT-----------TAAATTAAATGATAATTTAAANTAATTCAAATAATAATGAAAAT--T---------AT---AACAATAAAAGTAAATGATAATCGAGATAAAATAATGAAAATGACACACTTATTTTCC-TTTTTTGGCAGCTGTGCATTTCAAACATATTGGTATAAGT------------TACTGCTACTANTACCANCACTTCTACTAATGCTGANNNNNNNNNNNNNNNNGCTGCTGATGATGATACTAATAACAATATATAGTCATTTAAATTAAAG--------TA--------ATAATGATAATAAAATGAATCT
gi|1 : GTGCCGTTCCACGAAACATCATAAACTTACGTAAAAAATTATCGTCAG-TTTT---TA-ACATACGA----------AAAAAGTTACGATA-TTCATTTTGCGTTTCACGAACATCAACGTAAGTTTTTGCGTACGCCTAAAAAAAAAAAAGTTCGTAAGTTTT------TCGTAGGACGCTCTTTAGTACAGGAGATAAGTAACTGGCCATAGAAACGTCAACA-----------C-----------GGTA---------GAGCACCTGTC--------------A--------------TTATTTTCTC------------AATAAAA---GTTTATGAGTTGAAACTGAACACAAATGACGTCAGTTTTTAATTTACTACAAAATGACGTAAAAA-TACAAA-AAAATACGTCAT---TTCAGTTTCAT-TTATTAACTGTTT---CAGTGCCGATC--AACTAATTAATCAGTCATGAGAATTGTAAGACAAATTTATATAATATTAATCAAAATAAATTTACAGTTAATATTGCATCTAGTTTATTACTTTTTTA-TACTCTGTCGTTTATAGGAGATAT-ACAATGAATTT-NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGAGAGACCTTCATTCAATATAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN--N---------NN---NNCAATAAAAGTAAATGATATTCGAGATAAAATAATGAAAATGACACACTTATTTTCC-TTTTTTGGCAGCTGTGCATTTCAAACATATTGATATAAGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCTGATGATGATACTAATAACAATAAATAGTCATTTAAATTAAAGTACTATGATA--------ATAATGATAATAAAATGAATCT
gi|10 : CCATTTCATGAAACATCGTAAACTTACATAAAAAATTATCGTAAG-TTTT---TA-ACTTACGA----------AAAAAGTTACTATA-TTC-----------CACGAACATCAATGAATGTTTTTGCGTACGCCTAAG--AAAAAAAGTTTGTAAGTTTT------ATGTAGGACACTCTTTAGTACAGGAGATAAGTAACTGGCCATAGAAACAT
gi|11 : CGTCTTACTAAACATCGTAAGCTAAGAT-AAATTTTATCGTAAGTTTTT---TT-AGTTACGATATCTTAACGAAAAACTTACG-----TC------CGTCTTACCAACAATAACGTAAGTT----------------AAAAAAAA---TCGTAAGTTTTTTTTTGTCGTACGAC
gi|12 : gag---TCCGATTTTGTCTTAC-GACTCTCA---CAGCGCTGGTCGTAAATAAT--GTCAGTCATGAGAATTGTAAGACAAATTTATATAAatgata
gi|13 : gttgtagcgtgatatccttcagaccgtgagattcgccaggcaCAT---TC-GGTTTTGT-CT--TA-CGATTCTAACAGCGCTGGTCGTAAATAAC--GTCAGTCATGAAAATTGTA
gi|14 : tgtagcgtgatatccttcagaccgtgagattcgtcagaGGGGAGACCTTCATTCAATAA-----------TAAATTAAATGATATTTTAAATTAATTCAAATAATAATGAAAAT--G---------AT---AATAA
gi|15 : CTGATGATGATACTAATAACAATATATAGTCATTTAAATTAAAGTACGATGATA--------ATAATGATAATAAAATGAATaatgaaaa
gi|16 : T------------TATTGCTACTAGTACCAACACTT---CTAATGCTGA
gi|17 : CTGATGATGATGATACTAATAACAATATATAGTCATTTAAATTAAAG--------TA--------ATAATGATAATAAAATGAtgataacgataacaactagcattgcattgacattaaact
gi|19 : ATAGTCATTTAAATTAAAG--------TACGATGATAATAATGATAATAAAATGAAT
gi|2 : TGCCGTTTCACGAAACATCTTAAACTTACGCAAAAAATTATCGTAAG-TTTT---TA-ACTTACGA----------AAAAAGTTACGATA-TTCATTTTGCGTTTCACGAACATCAACGTAAGTTTTTGCGTACGCCTAAGAAAAAAAAATTTCGTAAGTTTT------TCGTAGGACGCTCTTTAGTACAGGAGATAAGTAACTGGCCATAGAAACGTCAACATCCGGCACGAAC-----------GGTA---------GAGCACCTGTC--------------A--------------TTATTTTCTC------------AATAAAA---GTTTATGCGTTGAAACTGAACACAAATGACGTCAGTTTTTAATTTACTACAAAATGACGTAAAAAATA-AAAAAAAATACGTCAT---TTCAGTTTCAT-TTATTAACTGTTC---CAGTGCCGATC--AACTAATTAATCAGTCATGAGAATTGTAAGACAAATTTATATAATATTAATCTAAATAAATTTACAGTTAATATTGCATCTAGTTTATTACTTTTTTA-TACTCTGTCGTTTATAGGAGATAT-ACAATGAATTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-----------TAAATTAAATGATAATTTAAATTAATTCAAATAATAATGAAAATGATAATAAAATGAT---AACAATAAAAGTAAATGATAATCGAGATAAAATAATGAAAATGACACACTTATTTTCC-TTTTTTGGCAGCTGTGCATTTCAAACATATTGGTATAAG
gi|3 : AAA--A-AAA-AAAATACGTCAT---TTCAGTTTCAT-TTATTAACTGTTC---CAGTGCCGATC--AACTAATTAATCAGTCATGAGAATTGTAAGACAAATTTATATAATATTAATCTAAATAAATTTACAGTTAATATTGCATCTAGTTTATTACTTTTTTA-TACTCTGTCGTTTATAGGAG-AACAACAATGAATTT-
gi|3 : CAATAAAAGTAAATGATAATCGAGATACAATAATGAAAATGACACACTTATTTTTC-TTTTTTGGCAGCTGTGCATTTCAAACATATTGGTATAAGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCTGATGATGATACTAATAACAATATATAGTCATTTAAATTAAAGTACGATGATA--------ATAATGATAATAAAATGAATCTnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncaataaaagtaaatgataatcgagatacaataatgaaaatgacacacttatttttcttttttggcagctgtgcatttcaaacatattggtataagtnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngctgatgatgatactaataacaatatatagtcatttaaattaaagtacgatgataataatgataataaaatgaatct
gi|4 : aaaaaaaaaaatacgtcatttcagtttcatttattaactgttccagtgccgatcaactaattaatcagtcatgagaattgtaagacaaatttatataatattaatctaaataaatttacagttaatattgcatctagtttattacttttttatactctgtcgtttataggagaacaacaatgaatttnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnAGATACGTCAGACATCCGGTTTTGT-CTGATGATTCTCA---CAGCGCTGGTCGTAAATAAT--GTCAGTCATGAGAATTGTAAGACAAATTTATATAATATTAATCTAAATAAATTTACAGTTAATACTGCATCTAGTTGATTACCTTTTTAATACTCTGTCGTATATAGGAGTTAT-ACAATGAATTT-NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-GGAGAGACCTTCATTCAATAT-----------TAAATTAAATGATAATTTATGATAATTCAAATAATAATGAAAAT--T---------AT---AATAATAAAAGTAAATGATAATTGAGATGAAATAAAGAAAATGACACACTTATTTTCC-TTTTTTGGCAGCTGTGCACTTCAAACATATTGGTATAAGT------------NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCTGCTGATGATGATACAAATAACAATATATAGTCATTTAAATTAAAG--------TA--------ATAATGATAATAAAATGA
gi|5 : gcgtgatatccttcagaccgtg---CAGCGCTGGTCGTAAATAAT--GTCAGTCATGAGAACTGTAAGACAAATTTATATAATATTAATCTAAATAAATTTACAGTTAATACTGCATCTAGTTTATTACTTTTTTA-TACTATGTTGTATATAGGAGTTAT-ACAATGAATTT-NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGGGAGACCTTCATTCAATAT-----------TAAATTAAATGATAATTTAAAATAATTCAAATAATAATGAAAAT--T---------ATTAT---AATAAAAGTAAATGATAATTGAGATGAAATGATGAAAATGACACAGTTATTTTCC-TTTTTTGGTAGCTGTGCACTTCAAACATATTGGTATAAGT------------TACTACTACTACTACTACTACTTCTACTAATGCTGA---------------------TGATAATGATACAGATAACAATATATAGTCATTTAAATTAAAG--------TA--------ATAATGA
gi|6 : aGTGCCTTTTCATGAAAAATCGTAAACTTACGAAAAAAAGTAT--TCA--TTTTGCATAGGCCTAAGA----------AAAAA
gi|6 : gtccaggTTTTGCATAGGCCTAAGAAAAAAAA-GTTCGTGATTTTT------TCGTAGGATACTCTTTAGTACAGGAGATAAGTAACTGGCCATAGAAATGTCAACA-----------TCTGGCATGAATGGTA---------GAGCACCTGCC--------------AATCATAAATGGTTGTTATTTTCTCGTTGC-TTTGAAAATAAAA---GTATATGCGTTGAAACTGAACACAAATGACG--AGTTTTTAATTTACTACAAAATATCATCAAAA-TA-AAA-AAAATACGTGAT---TCAAGTTTCAT-TTATTAACTGTTT---CAGTGCCGATC--AACTAAT--aagttcgtgattttttcgtaggatactctttagtacaggagataagtaactggccatagaaatgtcaacatctggcatgaatggtagagcacctgccaatcataaatggttgttattttctcgttgctttgaaaataaaagtatatgcgttgaaactgaacacaaatgacgagtttttaatttactacaaaatatcatcaaaataaaaaaaatacgtgattcaagtttcatttattaactgtttcagtgccgatcaactaattaa
gi|7 : gtccagggtgccttttcatgaaaaatcgtaaacttacgaaaaaaagtattcaGAAGTTAT-ACAATGAATTT-TAACGTAGTAAACG-NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGAGAGACATTCATTCtaa
gi|7 : GAGATAAAATAATGAAAATGACTCTCTTATTTTCC-TTTATTGGCAGCTGTGCATTTCAAACATATTGnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntgagataaaataatgaaaatgactctcttattttcctttattggcagctgtgcatttcaaacatattg
gi|8 : gaagttatacaatgaattttaacgtagtaaacgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnggagagacattcattcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntAAAAAAT------ACA-TTTT---TA-ACTTACGA----------AAACAGTTATT-TATTTT-----GCATTTCACGAACATCAACGTAATTTTTTG
gi|8 : CGTAA-TTTT------TTG-AGAGTACTCTTTAGTACAGGAGATAAGTAAATTGCCATAGCAACGTCGATATC---------C-----------GGCAAAAATGGCGGAGCACCTGTCAAACATAAATGGTTA--------------TTATTTGCTCATTGCTTTT--AAATAAAACATATTTAAGCGTTGAAACagagtactctttagtacaggagataagtaaattgccatagcaacgtcgatatccggcaaaaatggcggagcacctgtcaaacataaatggttattatttgctcattgcttttaaataaaacatatttaagcgttgaaac
gi|9 : aaaaaatacatttttaacttacgaaaacagttatttattttgcatttcacgaacatcaaAAAT--G---------AT---AATAATAAAAGTAAATGATAATCGAGATAAAATAATGAAAATGACACACTTATTTTCCTTTTTTTGGCAGCTGTGCATTTCAAACATATTGGTATAAGT------------------------------NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCTGATGATGATGATACTAATAACAATATATAGTCATTTAAATTAAAG--------TA--------ATAATGATAATAAAATGA
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|18 ): GTGTAGCGTGATATCCTACAGACCGTGAGATACGTCAGACATCCGGTTTTGTCTTACGAGTCTTA