lowQualScore : 22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
lowQualScore : 3333333333333333333333333333333 55555555555555555555555 1111 2222222222 555555555555555555 11 77777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777 22222 11 4444
lowQualScore : 0 0000000000000000000000000000000 1 3 2 55555555555555555555555 2 2 2 555 3333 0 5 3333333333 5555 6666 666666666666666666 22 11 0 3 3 6666 55555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555 1 55555 9 44 4444
lowQualScore : . ............................... . . . ....................... . . . ... .... . . .......... .... .... .................. .. .. . . . .... ........................................................................................................................................................................................................................................................................................................................................................................................................................................................... . ..... . .. ....
lowQualScore : 8 9999999999999999999999999999999 9 3 3 88888888888888888888888 9 9 9 000 3333 1 8 1111111111 9999 7777 111111111111111111 88 77 4 3 3 2222 33333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333 2 00000 5 88 0000
consensus : AGGTCTAGGAAATC-ACCAA-CAAAAC----------------GACAAATA-ATTTGTCGA---N-------------------CGAGGGAT-CAT-AGAA-TT---T---GTTGTTCGACAAATAT---------GAG---GTC-A-AAAT-----CNAN--A----GTTATTTGTCGAACGACAAATTTG-CA-AA---ATATTT---A-ATT-TT--TG------ATCA-A-T-TT-TATCTCAATTGTTTGTA-AATTAT-CATT--TT---TCT-----T-CT--GATGTGTTTTTTA-ATGTTG--ATT-GTCNN--TTTAAACGA-----A------TACATATTTTAACAG---NAAA-A----A-ATN----TGTC--AATAAGTTTCCA--TTTAAAAAAAA------A-AAAAGCGTAAAA--NGCGCACCAT-------CC--C-ACATT------TC---------------TC---ACC--------AAT----AATATTNATGCAACAANTG-GACGCGGACATTT-CTTAAAAGGAAAT-N----NTTTTAAA--T--T-TCAT--TTAAAATG-TGTC-AA--------TGA------TTATAA---TGAAAT--TTN---------TCANNTGACAAAT-----TATTTGTCGATTGGCAAATAATTTGTCGCTTGNNGGATTTT
Reference ( gi|1 ) : AGGTCTAGGAAAT--ACCAA-CAAAAC----------------GATAAATA-ATTTGTTGA---T-------------------CGAGGGAT-CAT-AGAA-TT---T---TTTGTTCGACAAATAT---------TAG---ATT-A-AAAT-----CCGG--C----GCTATTTGTTGAATGACAAATTTG-CA-AA---ATATTT---A-ATT-TT--TA------ATCA-A-T-TT-CATCCCAGTTGTATGTA-AATTATGCATT--TT---TTT----GTGTT--GATGTGTTTTTTA-ATGTTG--ATT-GTCTT--TTTAAACAA-----A------TATATATTTTAACAG---TAAA-A----A-ATC----TGTC--AATAACTTTCCA--TTTAAAAAAAA------A-AAAAGTGTAAAA--TGCATCCCAT-------CC--C-ACATTA-----TC---------------TC---ACC--------AAT----AATATTTCTACTGCGACTC-AACGCAGACAATT-CTTAAAAGGAAAT-T----TTTTTAAA--T--T-CCAT--TTGAAATG-TGTCCAA--------TGA-----CTTATAA---TGAAAT--TTT---------CCAAATGACAAAT-----TATTTTTCGCTTGGCAAATAATTTGTTGTTCCAAGGATTTT
gi|8 : AGATCTAGGAAATT-ACCAA----AAC----------------AAAAAATTTATTTGTAGA---T-------------------CGAGAGAT-GAT-AGAA-CT---T---GTTGATTGACAAATAT---------GAG---GTC-C-AAAT-----AAAT--A----GTTATTTGCCAAAC-ACAA---TA-C--AT---GTATTT---A-A--------G------ATGA-G-TGTT-TATCTTCGTTGTTTGTA-AATTATT--TT--TT---TTT----TTTCT--GATGAG-TCCTGA-ATGAAA--AT--------------ACAA-----A------TACATATCTTAACCC---CAAA-A----A-ATG----GGTCTAAATG--TTTATA--TTTAAAAAATA------A-AA
gi|9 : AGGTC-AAGAATTTCACCAA--AAAAC----------------AGTAACTG-ATTTGTTGA---TTGCCAAAAAAATTGTTGAACGTAGAAT-TAT-AGAA-TT---T---GTTGTTTGACAAATAT---------AAG---GTT-A-AAG------CCAA-------GATACTTGCGGAATGGCAAATTAA-CA-AG---AAATCT---A------T--CA------ATC----T-GT-CA----------ATATA-GAT-----ATT--TT---TCT-------CT--GATTTATTTGTTA-TTGGTG--GTT-TTCAT--TTTAAAAAA-----ATACATGTATACATTTT-CCAA---AAGA-A----A-AGG----TACC--AAAAAGATTATA--TTTAAAAAAtaaacaggagcacaacctcaaat
gi|11 : aacAGGTGTAGGAAATC-ACCAA-AACAACAAATAATTTCTGGAGTGATAAATA-ATTTATTAA---A-------------------TGAGCAGC-CAT-TGAA-TT---T---GCCGTTTAACAAATTT---------GAGGCAATT-ACCAATAGTTACTGG---------TATTTGTTGATCAACAAATTTT-CA-AACAGATATAA---A-AAT-TT--TG------ATAA-A-TATT-AATGTGAATTGTCTGTA-AAT--TCCAGT--TT---T-------TATT--GGC-TGTATTTAA-ATGTTGCAGGT-G---C--TTTAAACAAACATTA------TATATATTATAA-AG---T
gi|14 : cTCTAGAAAAC--ACTTA----AAC----------------ATCAAACA-ATTTGCCAA---C-------------------TGAGGAAT-TAT-AGCA-TT---C---GTTATTAGACAAATACATACCCCTGTAG----TC-A-AAAT-----------C----AATAGTTGTT-AATGACAAATTTG-GG-GG---ATATTT---A-GAT-AT--TG------ATCCTT-T-TT-TATCTGAATTATTTGTA-AATTCT--ATT--TT---T
gi|2 : TAGGAAAT----CAC-CAAAAT----------------GGTAAATA-ATTTGCTGA---A-------------------TGAGTGAT-TAT-AGAA-TT---T---TTCTTTTGACAAATAT---------GTG---GTC-C-AAAT-----CAAT--A----GTTTTTTGTT------C-AATTTGTCATAA---ATATT------ATT-TT--T--------TTA-A-C-----------------TGTA-AATT-TA-ATT--TTCCATTT-------CT--GATAT-TTTATT--ATAT-----TT-GTCAGAATTTAGATTT-----A------TACATGTTTT-ACAGAAATAAACATGTTA-AT-----TGTT--AATGAGTTGCCA--TTTAAACAGAA------A-AACA---CAAAA--TGTGCTTCATTGACGTACT--CAATATTAGCCATTCTGTAAAAGCAGGAAATC---ATG--------AAT----TATACTAATTCTACAAATG-GATGCGAAAATTT-CTTCAAAGGAAAT-GA---TCTTAAAA--T--G-ACAT--TCAAAATG-TATTAAT--------TGA-----GGGATCA---TGGAAT--TTA---------TCATTTATCAAAT-----TATTTATCAATTGGCAAACAATTTGTTGTTTGTTGGATTTT
gi|7 : taAGAAAATC-ACCA--CAAA------------------GACAAATC-ATTTGTAGA---TTGTCAAATAACTTACAAAACGAGGGAT-TAC-AGTA-TT---T---GTTGTTCAACCAAAGT---------GAG---ATCCA-AAAT-----CAAA--A----GTTATATGTTGAATGATGAATTTG-CA-AA---ATATAT---ATATT-TTGGTG------ATT----T-TT-AATCTCGGCTGTTTGTATAATT
gi|10 : --ACCAATCAGAACC---------------AACAAATA-ATTTGTGAA---A-------------------TGAGTT-T-CAT-A--A-TT---T---TCT-TTATATAAACAT---------GAG---ATT-C-AAAT-----CAAC--A----ATTACGTATTAAAGGAAACATTTG-CA-TA---CTTTTT---T-ATT-TT--C-------CTCA-A-T-TTGTATTTCAATATTTTGTC-AATT---C-TT--TT---TTC----TTCCT--GA-GTA---CTTA-ATGTTG--ATG-GTCCC--GTAAACCGA-----A----------------ACCAA---TATA-A----A-ATC-----GTA--TATAAGTGTCCA---TTAGAGAAAA------T-AAGAGCGTAAAA--TGCATACGAT-------CC--C-Acaaaatgtctttataatgcaatggaaattaaatatcctgaattaagatttgtttttttactaaaagagatatatcaataagacgccataaaaaggcgcaaatgttgcaccataccaca
gi|20 : AA-AAAATT----------------GGCAAACA-ATTTGTTGAATTT-------------------T---GGCT-TAC-AAAA-TT---T---GAGGTTTGACAAATGT---------GAG---GTT-A-AAAT-----C
gi|13 : aatcaatgagtgatttgttgaatAAAAT----------------CACAAA---ATTTGCCGA---A-------------------CATGGGAT-TAT-ATGA-TT---T---ATTGTTAAAAAAA-AT---------TA----ATT-A-TGGT-----CTGGATCAATAGGTATTTGTC-ATTGACAAATTTA-CA-TA---ATATTT---A-AAT-TG--TG------ATCA-A-TATT-TATCTCAATTGTTTGTA-AATTA--AATT--TT---TCTTAAAAT-CT--GATTTG---TGTA-ATGTTG--ATT-Gaataggtatatcatttacggaacaacgaatt
gi|5 : gAAAC----------------AACAAATG-ATTTGTCGA---T-------------------CAAGGAGT-CGT-AGAT-TT---T---GTCGTTCAACAAATAT---------GAA---GTA-A-GAAT-----CAGA--A----GTTATTAGTCCTATGGCAAATTTG-CC-TC----TATT------ATT-TT--TG------A--A-A-T-TT-TTTTTTTTTTTTATCAC-AATT---CAAT--TT---TCT------------------TTTCTG--TGTGG--ATT-ATCCAGATTTAAACAA-----A------TACATGTTTT-ACAG---AAAA-A----AGAAC----TGTC--AGTAAGTTTCAAGTTTTGAAAAAAA------ACAAAAACATAAAA--GGCGTACCAT-------CCATG-ACATT------TCG--------------TCAAAACCTAAAAAAAAATCATCAATATTTATGCAACAACTG-GAAGTGGACATTT-CTCAAAAGGAAAT-A----CTCTTAAA--
gi|4 : C----------------AACAAGTA-CTTTGTAGG---A-------------------CGAAGGAT-CAT-GGAAACT---C---GTCGTTCGACAAACAC---------GAG---ATC-C-AACT-----TCAA--TA---GTTATTTGTCAAAAGTCAAATTTG-CA-AA---ATATCCAAAA-ATT-T------------------T-TT-TATCTCAATTGTATG----ATAATTCATTAGTC---TCT----TTTCT--GAGGTG---TATACATG-TA--ATTGGCCTTC-TTTACACGA-----A------TATATATTTT-ACA-----AAA-C----A-ATG----CGTC--AGCAAGTTTCCA--TTAAAATAAAA------A-TAAAATTTAAAAACGGCACACCAT-------CT--A-ACAT-------CC---------------TA---AAA--------GAT----AA-ATGT-TAC----ACTTAAACGCGGG-AATTCCCTAAAAGAAAATAA----TCTATAAA--T--TATCAT--TTTAAatttaat
gi|22 : cacaaataatatgttcat----------------GATCAACA-ATTTATTGA---A-------------------TGACGGAT-TAT-AGAA-TTCAAT---TTT----AACAAATAT---------GAG---ATC-A-AA
gi|16 : aaatagagtgtcagttTTGA---A-------------------TGAGGAATGCATCAAAA-AT---T---GTTGTTTGGAAAATAT---------GAG---GTC-A-AAA------CTGA--C----A-TATTTGTGGAGTGAC-AACTGG-CA-AA---CTATAT---A-ACTGTT--TAAATGCTACCA-ATT-TT-TATCTCAATAGTTTATA----TATTCCTT--TT---TTT----AT-TT--GATA------TTA-ATGTTG--CTT-ATTT
gi|21 : -------------------CGAAGAAT-CAT-AGAA-AT---TGCCTTTG---GACAGATAT---------GAG---ATC-C-AAAC-----CTAT--A----GTAAATTGTACATCGACAA--TTG-CA-AA---ATATTA---A-A
gi|3 : --TT---TTT----ATTTTCTGATGTATT----A-ATATTG--ATT-GCCATA-TTTAAACAA------------TGGATATTTTA-CAG---AAAA-A----A-AACAACGTTTT--AATAAGTTTCCA--TTTATAACAAACAACTCA-AAAGGTGTA-----------TCAT-------CC--C-ACAT------------------------------CC--------AGA----AATA----------------AA---AGATAATT-TGTAAAAAAAAAT-TAAAAGTAATAAA--TTAT-CAATAATT--AATGCTGT--AACTGGATGCTGATATTTCTTAAAA---GGAAATAATTTTAAATTTGTCC-AATGACAAATTGTAATATTTGTTGTTTGGCAAATTATTTGaa
gi|15 : accttcaagaattaggcacatataggaaatctctaaaatgacaaaattataacatttgccaaagtagtgatcacagaaattgttgtttgacaagtatgaggtccaaatctatag---------------TC---ATC--------AAT----AATATTAGCGCAGAAAGTG-GACTTACACATTT-CTTAAATGGAAGT-C----CTCTTAAAATT--T-TTTT--TTGCAA--------AA--------TG-------TTGTAAATGTAAAAT--TTG---------TCATTTGGCGAGT-----TATTTTTCAATTGGTAACTAATGTGTCGCTTGGGGAATTT
gi|6 : tttgttaaagctgaaaaGCAGATTTTT-TTTGAAAGGAAAA-A----ATTTGAAA--T--T-TCAT--TTAAAATT-TGTC
gi|2 : gtcatttgatatattgagcaaataaatatgtgtagttatttgttgaaaataaatttgtgttttatgtttattatctagattaattaaggacttactttatagaagaaaaaaaaagtgtaaataagtttctgttaaaaaaataaaacataagtgcaaaaagtacatcatcccacaacctgagatcaaagacgttttgttaaagattaaaaatcataaaaaccattaaaactattatcaattggttCAAACAACAAAT-----TGTTTGCCAATTGATAAATAATTTGacatttggcgttaatcagcaataaatttgtcatt
7 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|12 ): CTGGTGTATGTAATATGATATTGACGGTCCTCGTGTAAACAAATGCATGTTTTCCAGAAGAAAGTGGTCAAATAGTTTCAATAAGTTTCCATTTTAAAAATAACCACACAAAATATAGGCCATCCCATATACTGAAATAAAGGACATATTTTTGTGAAATATCAAAATTATTTATGATATTTGTGCTGCAACTGAAAGCGCGAATTCGTTAAAGCAAATGATCTTAATATGTTATCCA
Unaligned ( gi|17 ): AAAAGACACCATCTCGCTTCCTAGTAGAAAGGATATTTTATAAAAGCTCAATTTATCCATAATAATTAATGCTACAACTGGAATATGATATTCTTTAAAAGATAAATGATATTAAAATTGTCAAGTTGGCATTCAACAAAATATTTGTTGATTGTC
Unaligned ( gi|18 ): AATACTATTAATGCTATAAATGGACGCGGACATTTTATTTAAAAGAATTATCCGTATAATCTTACAATTTCATTTTAATTTTGTTTAATAACAAATTGTAAAACTTATAGCTCAACAAATTGTTTGTAGGTCGGCATAGATATTTATGTTTACTGA
Unaligned ( gi|19 ): CAAACAAATTGTCAACTAACAATCAACTTATTGAATGAAGGATTATGGAACTTGTCATTTTGAAAAACATGAGATCAAAATCATTTGGCATTACACCAAAAAAAAATTACTTTGTCATCCAATTTGTTTGTATTAAAATTCATT
Unaligned ( gi|23 ): CAAAAAATATGAGGCCCCCCCACACACTGAAATGAAGAGACATATTTCTATACAACAAAATTAATTT
Unaligned ( gi|24 ): AAATAATTTTTCGAATTTGGGATTATAAAAATTGACGTTTGACAAATATGAGGTT
Unaligned ( gi|25 ): TTGTCCAACATCCCCCCGAATAAATGATATTTTATAGTAGCTAAATATCATC
Alignments
lowQualScore : 44444444444444444444444444444444444 111111111111 11 333333333333333333333333333333 33333333333333333333333333333333333333333333333333 333333333 222222 33333333333333333333 222222 444444444444444444444 1111111 11111 111111 1111 5555555555555555 1111 111 11
lowQualScore : 0 88888888888888888888888888888888888 5555 2 33 3 1 2 2 2 0 66 666666 88888888 33 2 2 3 1 111111111111 11 33 0 2 2 555 333333333333333333333333333333 333 3 3 2 5 99999999999999999999999999999999999999999999999999 6666 222222222 7 555 999999 555555 44 3 7 33333333333333333333 55 2 1 4 222222 2 4 666 0 66 444444444444444444444 9999 777 0 2222222 1 0 0 0 66 66 11111 111111 2 4 4 66 1111 66 66 66 5 7777 6666666666666666 1 22 2 99 4444 1 1 777 33 2 2 22
lowQualScore : . ................................... .... . .. . . . . . . .. ...... ........ .. . . . . ............ .. .. . . . ... .............................. ... . . . . .................................................. .... ......... . ... ...... ...... .. . . .................... .. . . . ...... . . ... . .. ..................... .... ... . ....... . . . . .. .. ..... ...... . . . .. .... .. .. .. . .... ................ . .. . .. .... . . ... .. . . ..
lowQualScore : 2 33333333333333333333333333333333333 3333 5 44 4 0 2 2 2 1 77 444444 11111111 44 4 5 4 9 444444444444 99 77 8 9 9 000 777777777777777777777777777777 333 1 1 9 7 66666666666666666666666666666666666666666666666666 1111 999999999 7 888 666666 222222 99 6 3 77777777777777777777 00 4 2 0 000000 3 0 555 5 11 777777777777777777777 4444 888 8 6666666 0 9 9 9 11 11 11111 444444 2 4 4 11 4444 11 11 44 7 9999 7777777777777777 0 00 8 22 2222 0 4 555 88 0 0 00
consensus : AGGTCTAGGAAATCACCA-----A-CAAAAC----------------GA----CAAA----TA-A--TTTGTCGAACGAGGGAT-CAT-AGAA-TTTGTCGTTC-GACAAA------TA--------TGAGGTC-AA-AAT-CAATAG-----T------TATTTGTCGA--ACGACAAATTTG-CA-AA---ATATTT---AATT--TTTG------ATCA-A-T-TT-T-ATCTCAA-TTGTTTG-T-A-AAT-T-A----T-CA-TTTTT--C--T-----T-C-TGATGTGTTT--TTTA-ATG----TTGATTGTC--NN--T--TTAAACAAA---TACAT------ATTTTA----ACAGAAA-AAA-A----T-----G---------TGTCAATAAGTTTCCA--TTTAAAAAAAAA-AA---AAGCGCAAA-A--GGCGCACCATCC--CACATT-TC-TC---ACC--------AAT----AA---TATTAATGCTGCAANTGGACGCGGACATTT--CTTAAAAGGA--A-----AT----AATCT-TA-AA--TT-T-CATTT--AA--AATG-T-G-T-CAAT-----GA-TTATA-TGAAATTTNTCGNTTGGCA--AATT----ATTTGTCGATTGGCAAA---TA--ATTTGTTGTTTGGNGGATTTT
Reference ( family-225 ) : AGGTCTAGGAAATCACCA-----A-CAAAAC----------------GA----CAAA----TA-A--TTTGTCGANCGAGGGAT-CAT-AGAA-TTTGTTGTTC-GACAAA------TA--------TGAGGTC-AA-AAT-CNANAG-----T------TATTTGTCGA--ACGACAAATTTG-CA-AA---ATATTT---AATT--TTTG------ATCA-A-T-TT-T-ATCTCAA-TTGTTTG-T-A-AAT-T-A----T-CA-TTTTT--C--T-----T-C-TGATGTGTTT--TTTA-ATG----TTGATTGTC--NN--T--TTAAACGAA---TACAT------ATTTTA----ACAGNAA-AAA-A----T-----N---------TGTCAATAAGTTTCCA--TTTAAAAAAAAA-AA---AAGCGTAAA-A--NGCGCACCATCC--CACATT-TC-TC---ACC--------AAT----AA---TATTNATGCAACAANTGGACGCGGACATTT--CTTAAAAGGA--A-----AT----NNTTT-TA-AA--TT-T-CATTT--AA--AATG-T-G-T-CAAT-----GA-TTATAATGAAATTTNTCANNTGACA--AATT----ATTTGTCGATTGGCAAA---TA--ATTTGTCGCTTGNNGGATTTT
gi|1 : AGGTCTAGGAAAT-ACCA-----A-CAAAAC----------------GA----TAAA----TA-A--TTTGTTGATCGAGGGAT-CAT-AGAA-TTTTTTGTTC-GACAAA------TA--------TTAGATT-AA-AAT-CCGGCG-----C------TATTTGTTGA--ATGACAAATTTG-CA-AA---ATATTT---AATT--TTTA------ATCA-A-T-TT-C-ATCCCAG-TTGTATG-T-A-AAT-T-A----TGCA-TTTTT--T--TG----TGT-TGATGTGTTT--TTTA-ATG----TTGATTGTC--TT--T--TTAAACAAA---TATAT------ATTTTA----ACAGTAA-AAA-A----T-----C---------TGTCAATAACTTTCCA--TTTAAAAAAAAA-AA---AAGTGTAAA-A--TGCATCCCATCC--CACATTATC-TC---ACC--------AAT----AA---TATTTCTACTGCGACTCAACGCAGACAATT--CTTAAAAGGA--A-----AT----TTTTT-TA-AA--TT-C-CATTT--GA--AATG-T-G-TCCAAT-----GACTTATAATGAAATTTTCCAAATGACA--AATT----ATTTTTCGCTTGGCAAA---TA--ATTTGTTGTTCCAAGGATTTT
gi|10 : ACCA-----ATCAGAACC---------------AA----CAAA----TA-A--TTTGTGAAATGAGTT-T-CAT-A--A-TTTTCT-TTA-TATAAA------CA--------TGAGATT-CA-AAT-CAACAA-----T------TACGTATTAA--AGGAAACATTTG-CA-TA---CTTTTT---TATT--TTCC-------TCA-A-T-TTGT-ATTTCAA-TATTTTG-T-C-AAT-T-C----T----TTTTT--C--T-----T-CCTGA-GTACTT-----A-ATG----TTGATGGTC--CC--G--TAAACCGAA----AC-------------------CAATAT-AAA-A----T-----C----------GTATATAAGTGTCCA--TT-AGAGAAAAT-AA---GAGCGTAAA-A--TGCATACGATCC--CA
gi|11 : AGGTGTAGGAAATCACCA-----A-AACAACAAATAATTTCTGGAGTGA----TAAA----TA-A--TTTATTAAATGAGCAGC-CAT-TGAA-TTTGCCGTTT-AACAAA------TT--------TGAGG-C-AATTAC-CAATAG-----TTACTGGTATTTGTTGA--TCAACAAATTTT-CA-AACAGATATAA---AAAT--TTTG------ATAA-A-TATT-A-ATGTGAA-TTGTCTG-T-A-AAT-T------C-CAGTTTTT--A--T---------TGGC-TGTAT--TTAA-ATG----TTGCAGGT---GC--T--TTAAACAAACATTATAT------ATATTA----
gi|12 : c-C-TGGTGTATGTAATATG-ATA----TTGACGGTC--CTCGT--GTAAACAAA---TGCAT------GTTTTC-----CAGAAG-AAA-G----T-----GGTCAAATAGTTTCAATAAGTTTCCA--TTTTAAAAATAA-CC---A--CACAAA-A--TATAGGCCATCC--CATATtaaagt
gi|13 : AAAAT----------------CA----CAAA-------A--TTTGCCGAACATGGGAT-TAT-ATGA-TTTATTGTTA-AAAAAAATTAATTA--------TG--GTC-TG-GAT-CAATAG-----G------TATTTGTC-A--TTGACAAATTTA-CA-TA---ATATTT---AAAT--TGTG------ATCA-A-TATT-T-ATCTCAA-TTGTTTG-T-A-AAT-T-A------AA-TTTTT--C--TTAAAAT-C-TGATTTG-----TGTA-ATG----TTGATTGactgaaataaaggacatatttttgtgaaatatcaaaattatttatgatatttgtgctgcaactgaaagcgcgaattcgttaaagcaaatgatcttaatatgttatcca
gi|14 : gTCTAGAAAA-CACTT-----A----AAC----------------AT----CAAA----CA-A--TTTGCCAACTGAGGAAT-TAT-AGCA-TTCGTTATTA-GACAAA------TACATACCCCTGTAGTC-AA-AAT-CAATAG-----T------TGTT-----A--ATGACAAATTTG-GG-GG---ATATTT---AGAT--ATTG------ATCCTT-T-TT-T-ATCTGAA-TTATTTG-T-A-AAT-T-C----T--A-TTTTT--
gi|15 : -TC---ATC--------AAT----AA---TATTAGCGCAGAAAGTGGACTTACACATTT--CTTAAATGGA--A-----GT----CCTCT-TA-AAATTT-T-TTTTTGCAA--AATG-TTG-T-AAAT-----G--------TAAAATTTGTCATTTGGCG--AGTT----ATTTTTCAATTGGTAAC---TA--ATGTGTCGCTTGGGGAATTT
gi|16 : tttgttaaagctgaaaaTTGAATGAGGAATGCATCAAAA-ATTGTTGTTT-GGAAAA------TA--------TGAGGTC-AA-AAC-TGACA-------------TATTTGTGGA--GTGAC-AACTGG-CA-AA---CTATAT---AACTG-TTTAAATGCTACCA-ATT-TT-T-ATCTCAA-TAGTTTA-T-A-TAT--------T-CC-TTTTT--T--TA----T-T-TGATA--------TTA-ATG----TTGCTTAT
gi|18 : --------AAT----AC---TATTAATGCTATAAATGGACGCGGACATTTTATTTAAAAGAATTATCCGTAT----AATCT-TACAA--TT-T-CATTT--TA--ATTT-T-GTT-TAATAACA-AA-TTGTA---AAACTTATAGCTCAACA--AATT----GTTTGTAGGTCGGCAtt
gi|19 : AAATTGTCA-----A-CTAA------------------------CAAT----CA-A--CTTATTGAATGAAGGAT-TAT-GGAA-CTTGTCATTTTGAAAAA------CA--------TGAGATC-AA-AAT-C------------------ATTTGGC-ATTACACCAAA------A-AA---A--------AATTACTTTG----------------T-C-ATC-CAATTTGTTTG-T----AT-T-AAAATT-CA-TTtagatatttatgtttactga
gi|2 : caaacTAGGAAATCACCA-----A----AAT----------------GG----TAAA----TA-A--TTTGCTGAATGAGTGAT-TAT-AGAA-TTTTTCTTTT-GACAAA------TA--------TGTGGTC-CA-AAT-CAATAG-----T------TTTTTGTT-----C----AATTTGTCATAA---ATATT-----ATT--T----------------T-TT-T-AAC----------TG-T-A-AAT-T------T-AA-TTTTC--CATT-----T-C-TGATAT-TTT--ATT--ATA----T---TTGTCAGAA--T--TTAGATTTA---TACAT------GTTTT-----ACAGAAATAAACA----TGTTAAT---------TGTTAATGAGTTGCCA--TTTAAACAGAAA-AA------CACAAA-A--TGTGCTTCAT
gi|2 : ta-TC---ATG--------AAT----TA---TACTAATTCTACAAATGGATGCGAAAATTT--CTTCAAAGGA--A-----AT----GATCT-TA-AA--AT-GACATTC--AA--AATG-T-A-T-TAATTGAGGGA-TCAT---GGAATTTATCATTTATCA--AATT----ATTTATCAATTGGCAAA---CA--ATTTGTTGTTTGTTGGATTTTtgacgtactcaatattagccattctgtaaaagcaggaaatcatgaattatactaattctacaaatggatgcgaaaatttcttcaaaggaaatgatcttaaaatgacattcaaaatgtattaattgagggatcatggaatttatcatttatcaaattatttatcaattggcaaacaatttgttgtttgttggatttt
gi|20 : tataggaaatcaccaaaatggtaaataatttgctgaatgagtgattatagaatttttcttttgacaaatatgtggtccaaatcaatagttttttgttcaatttgtcataaatattatttttttaactgtaaatttaattttccatttctgatattttattatatttgtcagaatttagatttatacatgttttacagaaataaacatgttaattgttaatgagttgccatttaaacagaaaaacacaaaatgtgcttcattgacgtactcaatattagccattctgtaaaagcaggaaaA-----A-AAAATT----------------GG----CAAA----CA-A--TTTGTTGAATTTTGGCT-TAC-AAAA-TTTGAGGTTT-GACAAA------TG--------TGAGGTT-AA-AAT-CAATAGGTATAT------CATTTACGGA--ACAACGAATT
gi|21 : aatcaatgagtgatttgttgaatCGAAGAAT-CAT-AGAA-ATTGCCTTTG-GACAGA------TA--------TGAGATC-CA-AAC-CTATAG-----T------AAATTGTACA--TCGACAA--TTG-CA-AA---ATATTA---AA
gi|22 : AA----CA-A--TTTATTGAATGACGGAT-TAT-AGAA-TTCAAT-TTT-AACAAA------TA--------TGAGATC-AA-Aaa
gi|24 : aaatagagtgtcagttgatcAAA----TA-A--TTTTTCGAATTTGGGAT-TAT-AAAA-ATTGACGTTT-GACAAA------TA--------TGAGGT
gi|3 : TAGGAAATCTCTA-----A----AAT----------------GA----CAAAATTATA-ACATTTGCCAAAGTAGTGAT-CAC-AGAA-ATTGTTGTTT-GACAAG------TA--------TGAGGTC-CA-AAT-CTATAG-----T------T-TTTATt
gi|3 : accttcaagaattaggcacata-A-AATCT-A----T-AG-TTTTTATT--T-----T-C-TGATGTATT------A-ATA----TTGATTGCC--ATA-T--TTAAAC-AA---TGGAT------ATTTTA-----CAGAAA-AAA-AACAAC-----G---------TTTTAATAAGTTTCCA--TTTATAACAAAC-AA------CTCAAA-A--GGTGTATCATCC--CACAT-----------CC--------AGA----AA---TA----------AAA--------GATAATT--TGTAAAAAAA--A-----ATTAAAAGTAA-TA-AA--TTAT-CA-AT--AATTAATGCT-G-T-AACT-----GG---ATGCTGATATTTCTTAAAAGGAAATAATTTTAAATTTGTCCAATGACAAATTGTAATATTTGTTGTTTGGCAAATTtttctgatgtattaatattgattgccatatttaaacaatggatattttacagaaaaaaaacaacgttttaataagtttccatttataacaaacaactcaaaaggtgtatcatcccacatccagaaataaaagataatttgtaaaaaaaaattaaaagtaataaattatcaataattaatgctgtaactggatgctgatatttcttaaaaggaaataattttaaatttgtccaatgacaaattgtaatatttgttgtttggcaaattatttg
gi|3 : accttcaagaattaggcacatataggaaatctctaaaatgacaaaattataacatttgccaaagtagtgatcacagaaattgttgtttgacaagtatgaggtcc-TT---ATC--------AAT----AA---T--TAATGCTGTAACTGGATGCTGATATTT--CTTAAAAGGA--A-----AT----AATTT-TA-AA--TT-T--GTCC--AA-------T-G-A-CAA-------A-TTGTAAT---ATTTGTTGTTTGGCA--AATT----ATTTGatttg
gi|4 : accttcaagaattaggcacatataggaaatctctaaaatgacaaaattataacatttgccaaagtagtgatcacagaaattgttgtttgacaagtatgaggtccaaatctatagtttttattttctgatgtattaatattgattgccatatttaaacaatggatattttacagaaaaaaaacaacgttttaataagtttccatttataacaaacaactcaaaaggtgtatcatcccacatccagaaataaaagataatttgtaaaaaaaaattaaaagtaataaaC----------------AA----CAAG----TA-C--TTTGTAGGACGAAGGAT-CAT-GGAAACTCGTCGTTC-GACAAA------CA--------CGAGATC-CA-ACTTCAATAG-----T------TATTTGTCAA--AAGTCAAATTTG-CA-AA---ATATCCAAAAATT--T----------------T-TT-T-ATCTCAA-TTGTATGAT-A-ATT-C-A----T-TAGTCTCT--T--T-----T-C-TGAGGTG-----TATACATG-----TAATTGGCCTTC--T--TTACACGAA---TATAT------ATTTT-----ACA--AA-ACA-A----T-----G---------CGTCAGCAAGTTTCCA--TTAAAATAAAAA-TA---AAATTTAAA-AACGGCACACCATCT--AACATC----------CT--------AA-----AA---GATAAATGTTACACTTAAACGCGGGAATTC--CCTAAAAGAA--A-----AT----AATCTATA-AA--TTAT-CATTT--TA--A
gi|5 : cacaaataatatgttcatAAAC----------------AA----CAAA----TG-A--TTTGTCGATCAAGGAGT-CGT-AGAT-TTTGTCGTTC-AACAAA------TA--------TGAAGTA-AG-AAT-CAGAAG-----T------TATTAGTCCT--ATGGCAAATTTG-CC-TC----TATT-----ATT--TTTG------A--A-A-T-TT-T-TTTTT---TTTTTTA-TCACAAT-T--------CA-ATTTT--C--T-----T------------T--TCTG--TG----TGGATTATC--CAGAT--TTAAACAAA---TACAT------GTTTTA-----CAGAAA-AAAGA----A-----C---------TGTCAGTAAGTTTCAAGTTTTGAAAAAAAACAA---AAACATAAA-A--GGCGTACCATCCATGACATT-TCGTCAAAACCTAAAAAAAAATCATCAA---TATTTATGCAACAACTGGAAGTGGACATTT--CTCAAAAGGA--A-----AT----ACTCT-TA-AA--------ATTT--AA--
gi|6 : TGTGTTT--T----ATG----TTTATTATC--TA--GA-TTAATTAAG---GACTT------ACTTTATAGAAGAAAAA-AAA-A----------G---------TGTAAATAAGTTTCTG--TTAAAAAAATAA-AACATAAGTGCAAA-A--AGTACATCATCC--CACAt
gi|6 : gtcatttgatatattgagcaaataaatatgtgtagttatttgttgaaaataaatt---ACC--------ATT----AAAACTATT-AT----CAATTGGTTGCAGATTTTT--TTTGAAAGGA--A-----AA----AATTT-GA-AA--TT-T-CATTT--AA--AATT-T-G-T-CAacctgagatcaaagacgttttgttaaagattaaaaatcataaaaaccattaaaactattatcaattggttgcagattttttttgaaaggaaaaaatttgaaatttcatttaaaatttgtcacatttggcgttaatcagcaataaatttgtcatt
gi|7 : gtcatttgatatattgagcaaataaatatgtgtagttatttgttgaaaataaatttgtgttttatgtttattatctagattaattaaggacttactttatagaagaaaaaaaaagtgtaaataagtttctgttaaaaaaataaaacataagtgcaaaaagtacatcatcccacaacctgagatcaaagacgttttgttaaagattaaaaatcataaaaAGAAAATCACCACAAAGA-CAAATCATTTGTA---------GATTGTCAAA----TA-A--CTTACAAAACGAGGGAT-TAC-AGTA-TTTGTTGTTC-AACCAA------AG--------TGAGATCCAA-AAT-CAAAAG-----T------TATATGTTGA--ATGATGAATTTG-CA-AA---ATATAT---ATAT--TTTG------GTGA-T-T-TT-TAATCTCGG-CTGTTTG-T-ATAAT-TCA----A-AA-TGTCT-----T-----T-A-TAATG---------CA-ATGGAAATTAAATATC--CT--GAATTAA---GA---TTTGT------TTTTTT----ACTAAAA-GAG-A----T-----A---------TATCAATAAGACGCCA--T---------AA-AA---AGGCGCAAA-T--GTTGCACCATAC--CACAcatttggcgttaatcagcaataaatttgtcatt
gi|8 : AGATCTAGGAAATTACCA-----A----AAC----------------AA----AAAA----TTTA--TTTGTAGATCGAGAGAT-GAT-AGAA-CTTGTTGATT-GACAAA------TA--------TGAGGTC-CA-AAT-AAATAG-----T------TATTTGCCAA--AC-ACAA---TA-C--AT---GTATTT---AA-------G------ATGA-G-TGTT-T-ATCTTCG-TTGTTTG-T-A-AAT-T-AT---T-TT-TTTTT--T--T-----T-C-TGATGAG-TC--CTGA-ATG----AAAAT-----------------ACAAA---TACAT------ATCTTA----ACCCCAA-AAA-A----T-----G---------GGTCTAAATGTTTATA--TTTAAAAAATAA-AA--------TAAACA--GGAGCACAACCT--CAAAT
gi|9 : ----CAAA----AA-A--ATTGTTGAACGTAGAAT-TAT-AGAA-TTTGTTGTTT-GACAAA------TA--------TAAGGTT-AA-AGC-CAAGA-------------TACTTGCGGA--ATGGCAAATTAA-CA-AG---A--------AATC--T---------ATCA-A-T-C-----TGTCAA------TA-T-A-GAT-----------A-TTTTT--C--------T-C-TGATTTATTT--GTTA-TTG----GTGGTTTTC--AT--T--TTAAAAAAA---TACATGTATACATTTT-----CCAAAAG-AAA-A----G-----G---------TACCAAAAAGATTATA--TTTAAAAAA
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|17 ): AAAAGACACCATCTCGCTTCCTAGTAGAAAGGATATTTTATAAAAGCTCAATTTATCCATAATAATTAATGCTACAACTGGAATATGATATTCTTTAAAAGATAAATGATATTAAAATTGTCAAGTTGGCATTCAACAAAATATTTGTTGATTGTC
Unaligned ( gi|23 ): CAAAAAATATGAGGCCCCCCCACACACTGAAATGAAGAGACATATTTCTATACAACAAAATTAATTT
Unaligned ( gi|25 ): TTGTCCAACATCCCCCCGAATAAATGATATTTTATAGTAGCTAAATATCATC
Alignments
lowQualScore : 44444444444444444444444444444444444 111111111111 11 333333333333333333333333333333 3333333333333 4444444444444444444444444444444 33333333 222222 3333333333333333 111111 444444444444444444444 11111 1111 11 555555555555555555 1111 2222222
lowQualScore : 0 88888888888888888888888888888888888 5555 2 33 3 2 2 2 2 1 66 666666 88888888 33 2 2 111111111111 11 0 2 2 6666 333333333333333333333333333333 333 3 3 2 5 4444444444444 2222222222222222222222222222222 6666 33333333 99 555 999999 444444 33 3 7 2222222222222222 55 1 4 999999 2 777 0 66 444444444444444444444 8888 1 22 44 1 55 4 55 55 00000 8888 4 4 4 1111 777 66 22 7777 999999999999999999 1 11 99 4444 1 1 2222222 0 11
lowQualScore : . ................................... .... . .. . . . . . . .. ...... ........ .. . . ............ .. . . . .... .............................. ... . . . . ............. ............................... .... ........ .. ... ...... ...... .. . . ................ .. . . ...... . ... . .. ..................... .... . .. .. . .. . .. .. ..... .... . . . .... ... .. .. .... .................. . .. .. .... . . ....... . ..
lowQualScore : 2 33333333333333333333333333333333333 3333 5 44 4 2 2 2 2 3 77 444444 11111111 44 4 5 444444444444 99 8 9 9 4444 777777777777777777777777777777 333 1 1 9 7 4444444444444 4444444444444444444444444444444 1111 77777777 22 888 666666 999999 44 6 3 4444444444444444 00 2 0 888888 3 111 5 11 777777777777777777777 5555 3 66 99 0 55 8 55 55 00000 5555 0 0 0 4444 888 11 11 9999 777777777777777777 0 77 22 2222 0 4 8888888 8 22
consensus : AGGTCTAGGAAATCACCA-----A-CAAAAC----------------GA----CAAA----TA-A--TTTGTCGAACGAGGGAT-CAT-AGAA-TTT-GTCGTTC-GACAAA------TA--------TGAGGTC-AA-AAT-CAATAG-----T------TATTTGTCGAACGACAAATTTG-CA-AA---ATATTT---AATT--TTTG------ATCA-A-T-TT-T-ATCTCAA-TTGTTTG-T-A-AAT-T-A----T-CA-TTTTT--C--T-----T-CTGATGTGT-T--TTTA-ATG----TTGATTGTC--NN--T-TTAAAC--AAA---TACAT------ATTTTA----ACAGAAA-AAA-A----T-G---------TGTCAATAAGTTTCCA--TTTAAAAAAAAA-AA---AAGCGCAAAA--GGCGCACCATCC--CACATT-TC-TC---ACC--------AAT----AATATTAATGCTGCAANTGGA--CGCGGACATTT--CTTAAAAGGA--A-----AT----AATCT-T-A-AATT-T-CATTT---AA--AATG-TG-T-CAAT-----GA-T-A--T-G-TGAAATTTNTCGNTTGGCA--AATT----ATTTGTCGATTGGCAAA---TA--ATTTGTTGTTTGGNGGATTTT
Reference ( family-225 ) : AGGTCTAGGAAATCACCA-----A-CAAAAC----------------GA----CAAA----TA-A--TTTGTCGAACGAGGGAT-CAT-AGAA-TTT-GTCGTTC-GACAAA------TA--------TGAGGTC-AA-AAT-CAATAG-----T------TATTTGTCGAACGACAAATTTG-CA-AA---ATATTT---AATT--TTTG------ATCA-A-T-TT-T-ATCTCAA-TTGTTTG-T-A-AAT-T-A----T-CA-TTTTT--C--T-----T-CTGATGTGTTT--TTTA-ATG----TTGATTGTC--NN--T-TTAAAC--AAA---TACAT------ATTTTA----ACAGAAA-AAA-A----T-G---------TGTCAATAAGTTTCCA--TTTAAAAAAAAA-AA---AAGCGCAAAA--GGCGCACCATCC--CACATT-TC-TC---ACC--------AAT----AATATTAATGCTGCAANTGGA--CGCGGACATTT--CTTAAAAGGA--A-----AT----AATCT-T-A-AATT-T-CATTT---AA--AATG-TG-T-CAAT-----GA-TTA--T-A-TGAAATTTNTCGNTTGGCA--AATT----ATTTGTCGATTGGCAAA---TA--ATTTGTTGTTTGGNGGATTTT
gi|1 : AGGTCTAGGAAAT-ACCA-----A-CAAAAC----------------GA----TAAA----TA-A--TTTGTTGATCGAGGGAT-CAT-AGAA-TTT-TTTGTTC-GACAAA------TA--------TTAGATT-AA-AAT-CCGGCG-----C------TATTTGTTGAATGACAAATTTG-CA-AA---ATATTT---AATT--TTTA------ATCA-A-T-TT-C-ATCCCAG-TTGTATG-T-A-AAT-T-A----TGCA-TTTTT--T--TG----TGTTGATGTGTTT--TTTA-ATG----TTGATTGTC--TT--T-TTAAAC--AAA---TATAT------ATTTTA----ACAGTAA-AAA-A----T-C---------TGTCAATAACTTTCCA--TTTAAAAAAAAA-AA---AAGTGTAAAA--TGCATCCCATCC--CACATTATC-TC---ACC--------AAT----AATATTTCTACTGCGACTCAA--CGCAGACAATT--CTTAAAAGGA--A-----AT----TTTTT-T-A-AATT-C-CATTT---GA--AATG-TG-TCCAAT-----GACTTA--TAA-TGAAATTTTCCAAATGACA--AATT----ATTTTTCGCTTGGCAAA---TA--ATTTGTTGTTCCAAGGATTTT
gi|10 : ACCA-----ATCAGAACC---------------AA----CAAA----TA-A--TTTGTGAAATGAGTT-T-CAT-A--A-TTT--TCTTTA-TATAAA------CA--------TGAGATT-CA-AAT-CAACAA-----T------TACGTATTAAAGGAAACATTTG-CA-TA---CTTTTT---TATT--TTC-------CTCA-A-T-TTGT-ATTTCAA-TATTTTG-T-C-AAT-T-C----T----TTTTT--C--T-----TCCTGA-GTA-----CTTA-ATG----TTGATGGTC--CC----GTAAACCGAAA---CCAAT------AT----------------AAA-A----TCG---------TAT--ATAAGTGTCCA---TTAGAGAAAAT-AA---GAGCGTAAAA--TGCATACGATCC--CA
gi|11 : AGGTGTAGGAAATCACCA-----A-AACAACAAATAATTTCTGGAGTGA----TAAA----TA-A--TTTATTAAATGAGCAGC-CAT-TGAA-TTT-GCCGTTT-AACAAA------TT--------TGAGG-C-AATTAC-CAATAG-----TTACTGGTATTTGTTGATCAACAAATTTT-CA-AACAGATATAA---AAAT--TTTG------ATAA-A-TATT-A-ATGTGAA-TTGTCTG-T-A-AAT-T------C-CAGTTTTT--A--T--------TGGC-TGTAT--TTAA-ATG----TTGCAGGT---GC--T-TTAAAC--AAACATTATAT------ATATTA----
gi|12 : c-CTGGTGTATGTAATATG-ATA----TTGACGGTC--CTCGT-GTAAAC--AAA---TGCAT------GTTTTC-----CAGAAG-AAA-G----T-GGTCAAATAGTTTCAATAAGTTTCCA--TTTTAAAAATAA-CC---A--CACAAAA--TATAGGCCATCC--CATATtaaagt
gi|12 : AT----GATATTTGTGCTGCAACTGAAAGCGCGAA---TT--CGTTAAAGCA--A-----AT----GATCT-T-A-Aactgaaataaaggacatatttttgtgaaatatcaaaattatttatgatatttgtgctgcaactgaaagcgcgaattcgttaaagcaaatgatcttaatatgttatcca
gi|13 : ctggtgtatgtaatatgatattgacggtcctcgtgtaaacaaatgcatgttttccagaagaaagtggtcaaatagtttcaataagtttccattttaaaaataaccacacaaaatataggccatcccatatactgaaataaaggacatatttttgtgaaatatcaaaattatttAAAAT----------------CA----CAAA-------A--TTTGCCGAACATGGGAT-TAT-ATGA-TTT-ATTGTTA-AAAAAAATTAATTA--------TG--GTC-TG-GAT-CAATAG-----G------TATTTGTC-ATTGACAAATTTA-CA-TA---ATATTT---AAAT--TGTG------ATCA-A-TATT-T-ATCTCAA-TTGTTTG-T-A-AAT-T-A------AA-TTTTT--C--TTAAAAT-CTGATTTG-----TGTA-ATG----TTGATTGtatgttatcca
gi|14 : gTCTAGAAAA-CACTT-----A----AAC----------------AT----CAAA----CA-A--TTTGCCAACTGAGGAAT-TAT-AGCA-TTC-GTTATTA-GACAAA------TACATACCCCTGTAGTC-AA-AAT-CAATAG-----T------TGTT-----AATGACAAATTTG-GG-GG---ATATTT---AGAT--ATTG------ATCCTT-T-TT-T-ATCTGAA-TTATTTG-T-A-AAT-T-C----T--A-TTTTT--
gi|15 : -TC---ATC--------AAT----AATATTAGCGCAGAAAGTGGA--CTTACACATTT--CTTAAATGGA--A-----GT----CCTCT-TAA-AATT-T-TTTTTTGCAA--AATGTTG-T-AAAT-----G-----------TAAAATTTGTCATTTGGCG--AGTT----ATTTTTCAATTGGTAAC---TA--ATGTGTCGCTTGGGGAATTT
gi|16 : tttgttaaagctgaaaaTTGAATGAGGAATGCATCAAAA-ATT-GTTGTTT-GGAAAA------TA--------TGAGGTC-AA-AAC-TGACA-------------TATTTGTGGAGTGAC-AACTGG-CA-AA---CTATAT---AACTG-TTTAAATGCTACCA-ATT-TT-T-ATCTCAA-TAGTTTA-T-A-TAT--------T-CC-TTTTT--T--TA----T-TTGATA--------TTA-ATG----TTGCTTAT
gi|18 : --------AAT----ACTATTAATGCTATAAATGGA--CGCGGACATTTTATTTAAAAGAATTATCCGTAT----AATCT-T-ACAATT-T-CATTT---TA--ATTT-TGTT-TAAT-----AA-CAAATT-G-TAAAACTTATAGCTCAACA--AATT----GTTTGTAGGTCGGCATA---GAT-ATTTA-TGTTTtt
gi|19 : AAATTGTCA-----A-CTAA------------------------CAAT----CA-A--CTTATTGAATGAAGGAT-TAT-GGAA-CTT-GTCATTTTGAAAAA------CA--------TGAGATC-AA-AAT-CATTTG-----G------CATT------ACACCAAA------A-AA---A--------AATTACTTTG----------------T-C-ATC-CAATTTGTTTG-T----AT-T-AAAATT-CA-TTactga
gi|2 : caaacTAGGAAATCACCA-----A----AAT----------------GG----TAAA----TA-A--TTTGCTGAATGAGTGAT-TAT-AGAA-TTT-TTCTTTT-GACAAA------TA--------TGTGGTC-CA-AAT-CAATAG-----T------TTTTTGTT---C----AATTTGTCATAA---ATATT-----ATT--T----------------T-TT-T-AAC----------TG-T-A-AAT-T------T-AA-TTTTC--CATT-----T-CTGATAT-TTT--ATT--ATA----T---TTGTCAGAA--T-TTAGAT--TTA---TACAT------GTTTT-----ACAGAAATAAACA----T-GTTAAT----TGTTAATGAGTTGCCA--TTTAAACAGAAA-AA------CACAAAA--TGTGCTTCAT
gi|2 : ta-TC---ATG--------AAT----TATACTAATTCTACAAATGGA--TGCGAAAATTT--CTTCAAAGGA--A-----AT----GATCT-T-A-AAAT-GACATTC---AA--AATG-TA-T-TAATTGAGGGA-TCA--T----GGAATTTATCATTTATCA--AATT----ATTTATCAATTGGCAAA---CA--ATTTGTTGTTTGTTGGATTTTtgacgtactcaatattagccattctgtaaaagcaggaaatcatgaattatactaattctacaaatggatgcgaaaatttcttcaaaggaaatgatcttaaaatgacattcaaaatgtattaattgagggatcatggaatttatcatttatcaaattatttatcaattggcaaacaatttgttgtttgttggatttt
gi|20 : tataggaaatcaccaaaatggtaaataatttgctgaatgagtgattatagaatttttcttttgacaaatatgtggtccaaatcaatagttttttgttcaatttgtcataaatattatttttttaactgtaaatttaattttccatttctgatattttattatatttgtcagaatttagatttatacatgttttacagaaataaacatgttaattgttaatgagttgccatttaaacagaaaaacacaaaatgtgcttcattgacgtactcaatattagccattctgtaaaagcaggaaaA-----A-AAAATT----------------GG----CAAA----CA-A--TTTGTTGAATTTTGGCT-TAC-AAAA-TTT-GAGGTTT-GACAAA------TG--------TGAGGTT-AA-AAT-CAATAGGTATAT------CATTTACGGAACAACGAATT
gi|21 : aatcaatgagtgatttgttgaatCGAAGAAT-CAT-AGAA-ATT-GCCTTTG-GACAGA------TA--------TGAGATC-CA-AAC-CTATAG-----T------AAATTGTACATCGACAA--TTG-CA-AA---ATATTA---AA
gi|22 : AA----CA-A--TTTATTGAATGACGGAT-TAT-AGAA-TTCAAT--TTT-AACAAA------TA--------TGAGATC-AA-Aaa
gi|24 : aaatagagtgtcagttgatcAAA----TA-A--TTTTTCGAATTTGGGAT-TAT-AAAA-ATT-GACGTTT-GACAAA------TA--------TGAGGT
gi|3 : TAGGAAATCTCTA-----A----AAT----------------GA----CAAAATTATA-ACATTTGCCAAAGTAGTGAT-CAC-AGAA-ATT-GTTGTTT-GACAAG------TA--------TGAGGTC-CA-AAT-CTATAG-----T------T-TTTATt
gi|3 : accttcaagaattaggcacata-A-AATCT-A----T-AG-TTTTTATT--T-----T-CTGATGTATT------A-ATA----TTGATTGCC--ATA-T-TTAAAC--AA----TGGAT------ATTTTA-----CAGAAA-AAA-AACAAC-G---------TTTTAATAAGTTTCCA--TTTATAACAAAC-AA------CTCAAAA--GGTGTATCATCC--CACAT-----------CC--------AGA----AATA----------AAA----------GATAATT--TGTAAAAAAA--A-----ATTAAAAGTAA-T-A-AATTAT-CA-AT---AATTAATGCTG-T-AACT-----GG---A--T-GCTGATATTTCTTAAAAGGAAATAATTTTAAATTTGTCCAATGACAAATTGTAATATTTGTTGTTTGGCAAATTtttctgatgtattaatattgattgccatatttaaacaatggatattttacagaaaaaaaacaacgttttaataagtttccatttataacaaacaactcaaaaggtgtatcatcccacatccagaaataaaagataatttgtaaaaaaaaattaaaagtaataaattatcaataattaatgctgtaactggatgctgatatttcttaaaaggaaataattttaaatttgtccaatgacaaattgtaatatttgttgtttggcaaattatttg
gi|3 : accttcaagaattaggcacatataggaaatctctaaaatgacaaaattataacatttgccaaagtagtgatcacagaaattgttgtttgacaagtatgaggtcc-TT---ATC--------AAT----AAT--TAATGCTGTAACTGGA--TGCTGATATTT--CTTAAAAGGA--A-----AT----AATTT-T-A-AATT-T--GTCC---AA-------TG-A-CAA-------A-TTG--T-A---ATATTTGTTGTTTGGCA--AATT----ATTTGatttg
gi|4 : accttcaagaattaggcacatataggaaatctctaaaatgacaaaattataacatttgccaaagtagtgatcacagaaattgttgtttgacaagtatgaggtccaaatctatagtttttattttctgatgtattaatattgattgccatatttaaacaatggatattttacagaaaaaaaacaacgttttaataagtttccatttataacaaacaactcaaaaggtgtatcatcccacatccagaaataaaagataatttgtaaaaaaaaattaaaagtaataaaC----------------AA----CAAG----TA-C--TTTGTAGGACGAAGGAT-CAT-GGAAACTC-GTCGTTC-GACAAA------CA--------CGAGATC-CA-ACTTCAATAG-----T------TATTTGTCAAAAGTCAAATTTG-CA-AA---ATATCCAAAAATT--T----------------T-TT-T-ATCTCAA-TTGTATGAT-A-ATT-C-A----T-TAGTCTCT--T--T-----T-CTGAGGTG-----TATACATG-----TAATTGGCCTTC--T-TTACAC--GAA---TATAT------ATTTT-----AC--AAA-ACA-A----T-G---------CGTCAGCAAGTTTCCA--TTAAAATAAAAA-TA---AAATTTAAAAACGGCACACCATCT--AACATC----------CT--------AA-----AAGATAAATGTTACACTTAAA--CGCGGGAATTC--CCTAAAAGAA--A-----AT----AATCTAT-A-AATTAT-CATTT---TA--A
gi|5 : cacaaataatatgttcatAAAC----------------AA----CAAA----TG-A--TTTGTCGATCAAGGAGT-CGT-AGAT-TTT-GTCGTTC-AACAAA------TA--------TGAAGTA-AG-AAT-CAGAAG-----T------TATTAGTCCTATGGCAAATTTG-CC-TC----TATT-----ATT--TTTG------A--A-A-T-TT-T-TTTTT---TTTTTTA-TCACAAT-T--------CA-ATTTT--C--T-----T-----------T--TCTG--TG----TGGATTATC--CAGAT-TTAAAC--AAA---TACAT------GTTTT-----ACAGAAA-AAAGA----A-C---------TGTCAGTAAGTTTCAAGTTTTGAAAAAAAACAA---AAACATAAAA--GGCGTACCATCCATGACATT-TCGTCAAAACCTAAAAAAAAATCATCAATATTTATGCAACAACTGGA--AGTGGACATTT--CTCAAAAGGA--A-----AT----ACTCT-T-A-AA------ATTT---AA--
gi|6 : TGTGTTT--T----ATG----TTTATTATC--TA--GATTAATT--AAG---GACTT------ACTTTATAGAAGAAAAA-AAA-A------G---------TGTAAATAAGTTTCTG--TTAAAAAAATAA-AACATAAGTGCAAAA--AGTACATCATCC--CACAt
gi|6 : gtcatttgatatattgagcaaataaatatgtgtagttatttgttgaaaataaatt---ACC--------ATT----AAAACTATTAT--CAATTGGT--TGCAGATTTTT--TTTGAAAGGA--A-----AA----AATTT-G-A-AATT-T-CATTT---AA--AATT-TG-T-CAacctgagatcaaagacgttttgttaaagattaaaaatcataaaaaccattaaaactattatcaattggttgcagattttttttgaaaggaaaaaatttgaaatttcatttaaaatttgtcacatttggcgttaatcagcaataaatttgtcatt
gi|7 : gtcatttgatatattgagcaaataaatatgtgtagttatttgttgaaaataaatttgtgttttatgtttattatctagattaattaaggacttactttatagaagaaaaaaaaagtgtaaataagtttctgttaaaaaaataaaacataagtgcaaaaagtacatcatcccacaacctgagatcaaagacgttttgttaaagattaaaaatcataaaaAGAAAATCACCACAAAGA-CAAATCATTTGTA---------GATTGTCAAA----TA-A--CTTACAAAACGAGGGAT-TAC-AGTA-TTT-GTTGTTC-AACCAA------AG--------TGAGATCCAA-AAT-CAAAAG-----T------TATATGTTGAATGATGAATTTG-CA-AA---ATATAT---ATAT--TTTG------GTGA-T-T-TT-TAATCTCGG-CTGTTTG-T-ATAAT-TCA----A-AA-TGTCT-----T-----T-ATAATG---------CA-ATGGAAATTAAATATC--C------TGAATTAAGA---TTTGT------TTTTTT----ACTAAAA-GAG-A----T-A---------TATCAATAAGACGCCA--T---------AA-AA---AGGCGCAAAT--GTTGCACCATAC--CACAcatttggcgttaatcagcaataaatttgtcatt
gi|8 : AGATCTAGGAAATTACCA-----A----AAC----------------AA----AAAA----TTTA--TTTGTAGATCGAGAGAT-GAT-AGAA-CTT-GTTGATT-GACAAA------TA--------TGAGGTC-CA-AAT-AAATAG-----T------TATTTGCCAAAC-ACAA---TA-CA-TG----TATTT---AA-------G------ATGA-G-TGTT-T-ATCTTCG-TTGTTTG-T-A-AAT-T-A----T-TT-TTTTT--T--T-----TTCTGATGAGTCC--TG-A-ATG----AAAAT----------------AC--AAA---TACAT------ATCTTA----ACCCCAA-AAA-A----T-G---------GGTCTAAATGTTTATA--TTTAAAAAATAA-AA---TA----AACA--GGAGCACAACCT--CAAAT
gi|9 : ----CAAA----AA-A--ATTGTTGAACGTAGAAT-TAT-AGAA-TTT-GTTGTTT-GACAAA------TA--------TAAGGTT-AA-AGC-CAAGA-------------TACTTGCGGAATGGCAAATTAA-CA-AG---A--------AATC--T---------ATCA-A-T-C-----TGTCAA------TA-T-A-GAT-----------A-TTTTT--C--------T-CTGATTTATTT--GTTA-TTG----GTGGTTTTC--AT--T-TTAAAA--AAA---TACATGTATACATTTT-----CCAAAAG-AAA-A----G-G---------TACCAAAAAGATTATA--TTTAAAAAA
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|17 ): AAAAGACACCATCTCGCTTCCTAGTAGAAAGGATATTTTATAAAAGCTCAATTTATCCATAATAATTAATGCTACAACTGGAATATGATATTCTTTAAAAGATAAATGATATTAAAATTGTCAAGTTGGCATTCAACAAAATATTTGTTGATTGTC
Unaligned ( gi|23 ): CAAAAAATATGAGGCCCCCCCACACACTGAAATGAAGAGACATATTTCTATACAACAAAATTAATTT
Unaligned ( gi|25 ): TTGTCCAACATCCCCCCGAATAAATGATATTTTATAGTAGCTAAATATCATC
Alignments
lowQualScore : 44444444444444444444444444444444444 111111111111 11 333333333333333333333333333333 3333333333333 33333333333333333333333333333333 33333333 222222 3333333333333333 111111 4444444444444444444444444444 111 111111111 5555555555555555555555555555555555555555555555555 1111111111 2222 333333333333 2222222
lowQualScore : 0 88888888888888888888888888888888888 5555 2 33 3 2 2 2 2 1 66 666666 88888888 33 2 2 111111111111 11 0 2 2 555 333333333333333333333333333333 333 3 3 2 5 1111111111111 66666666666666666666666666666666 6666 33333333 99 555 999999 444444 33 3 7 2222222222222222 55 1 4 999999 2 777 0 55 2222222222222222222222222222 3 77777 22 7777 111 1 000000000 55 3 3 55 99999 8888888888 3 3 2222222222222222222222222222222222222222222222222 2 1 1 222 8888888888 4444 444444444444 2222222 0 11
lowQualScore : . ................................... .... . .. . . . . . . .. ...... ........ .. . . ............ .. . . . ... .............................. ... . . . . ............. ................................ .... ........ .. ... ...... ...... .. . . ................ .. . . ...... . ... . .. ............................ . ..... .. .... ... . ......... .. . . .. ..... .......... . . ................................................. . . . ... .......... .... ............ ....... . ..
lowQualScore : 2 33333333333333333333333333333333333 3333 5 44 4 2 2 2 2 3 77 444444 11111111 44 4 5 444444444444 99 8 9 9 000 777777777777777777777777777777 333 1 1 9 7 5555555555555 11111111111111111111111111111111 1111 77777777 22 888 666666 999999 44 6 3 4444444444444444 00 2 0 888888 3 111 5 55 0000000000000000000000000000 6 11111 77 4444 444 2 333333333 00 6 6 00 11111 9999999999 6 6 1111111111111111111111111111111111111111111111111 7 9 0 999 9999999999 3333 222222222222 8888888 8 22
consensus : AGGTCTAGGAAATCACCA-----A-CAAAAC----------------GA----CAAA----TA-A--TTTGTCGAACGAGGGAT-CAT-AGAA-TTT-GTCGTTC-GACAAA------TA--------TGAGGTC-AA-AAT-CAATAG-----T------TATTTGTCGAACGACAAATTTG-CA-AA---ATATTT---AATT--TTTG------ATCA-A-T-TT-T-ATCTCAA-TTGTTTG-T-A-AAT-T-A----T-CA-TTTTT--C--T-----T-CTGATGTG-TTT--T-TA-ATG----TTGATTGTC--NN--T-TTAAAC--AAA---TACAT------ATTTTA----ACAGAAA-AAA-A----T-G---------TGTCAATAAGTTTCCA--TTTAAAAAAAAA-AA---AAGCGCAAAA--GGCGCACCATCC--CACATT-TC-TC---ACC--------AAT----AATA-TTA---ATGCTGCAA---CTGGA---CGCGGA-CAT-----TT--CT-TAAAAGG-A--A-----AT----AATCT-T-A-AATT-TCATTT---A----A--AATG-TG-T-C----AATGA--CA---T-G-TAAAATTTGTCGNTCGG-----CA---AATT----ATTTGTCGA------------TTGGCAAA---TA--ATTTGTTGTTTGGNGGATTTT
Reference ( family-225 ) : AGGTCTAGGAAATCACCA-----A-CAAAAC----------------GA----CAAA----TA-A--TTTGTCGAACGAGGGAT-CAT-AGAA-TTT-GTCGTTC-GACAAA------TA--------TGAGGTC-AA-AAT-CAATAG-----T------TATTTGTCGAACGACAAATTTG-CA-AA---ATATTT---AATT--TTTG------ATCA-A-T-TT-T-ATCTCAA-TTGTTTG-T-A-AAT-T-A----T-CA-TTTTT--C--T-----T-CTGATGTG-TTT--T-TA-ATG----TTGATTGTC--NN--T-TTAAAC--AAA---TACAT------ATTTTA----ACAGAAA-AAA-A----T-G---------TGTCAATAAGTTTCCA--TTTAAAAAAAAA-AA---AAGCGCAAAA--GGCGCACCATCC--CACATT-TC-TC---ACC--------AAT----AATA-TTA---ATGCTGCAA---NTGGA---CGCGGA-CAT-----TT--CT-TAAAAGG-A--A-----AT----AATCT-T-A-AATT-TCATTT---A----A--AATG-TG-T-C----AATGA--TA---T-G-TGAAATTTNTCGNTTGG-----CA---AATT----ATTTGTCGA------------TTGGCAAA---TA--ATTTGTTGTTTGGNGGATTTT
gi|1 : AGGTCTAGGAAAT-ACCA-----A-CAAAAC----------------GA----TAAA----TA-A--TTTGTTGATCGAGGGAT-CAT-AGAA-TTT-TTTGTTC-GACAAA------TA--------TTAGATT-AA-AAT-CCGGCG-----C------TATTTGTTGAATGACAAATTTG-CA-AA---ATATTT---AATT--TTTA------ATCA-A-T-TT-C-ATCCCAG-TTGTATG-T-A-AAT-T-A----TGCA-TTTTT--T--TG----TGTTGATGTGTTTT--T-TA-ATG----TTGATTGTC--TT--T-TTAAAC--AAA---TATAT------ATTTTA----ACAGTAA-AAA-A----T-C---------TGTCAATAACTTTCCA--TTTAAAAAAAAA-AA---AAGTGTAAAA--TGCATCCCATCC--CACATTATC-TC---ACC--------AAT----AATA-TTT---CTACTGCGA---CTCAA---CGCAGA-CAA-----TT--CT-TAAAAGG-A--A-----AT----TTTTT-T-A-AATT-CCATTT---G----A--AATG-TG-TCC----AATGACTTA---TAA-TGAAATTTTCCAAATGA-----CA---AATT----ATTTTTCGC------------TTGGCAAA---TA--ATTTGTTGTTCCAAGGATTTT
gi|10 : ACCA-----ATCAGAACC---------------AA----CAAA----TA-A--TTTGTGAAATGAGTT-T-CAT-A--A-TTT--TCTTTA-TATAAA------CA--------TGAGATT-CA-AAT-CAACAA-----T------TACGTATTAAAGGAAACATTTG-CA-TA---CTTTTT---TATT--TTC-------CTCA-A-T-TTGT-ATTTCAA-TATTTTG-T-C-AAT-T-C----T----TTTTT--C--T-----TCCTGA---G-TAC--T-TA-ATG----TTGATGGTC--CC----GTAAACCGAAA---CCAAT------AT----------------AAA-A----TCG---------TAT--ATAAGTGTCCA---TTAGAGAAAAT-AA---GAGCGTAAAA--TGCATACGATCC--CA
gi|11 : AGGTGTAGGAAATCACCA-----A-AACAACAAATAATTTCTGGAGTGA----TAAA----TA-A--TTTATTAAATGAGCAGC-CAT-TGAA-TTT-GCCGTTT-AACAAA------TT--------TGAGG-C-AATTAC-CAATAG-----TTACTGGTATTTGTTGATCAACAAATTTT-CA-AACAGATATAA---AAAT--TTTG------ATAA-A-TATT-A-ATGTGAA-TTGTCTG-T-A-AAT-T------C-CA-GTTTT--T--A-----T-TGGCTGTA--TT--T-AA-ATG----TTGCAGGT---GC--T-TTAAAC--AAACATTATAT------ATATTA----
gi|12 : c-CTGGTGTA-TGTAATATG-ATA----TTGACGGTC--CTCGT-GTAAAC--AAA---TGCAT------GTTTTC-----CAGAAG-AAA-G----T-GGTCAAATAGTTTCAATAAGTTTCCA--TTTTAAAAATAA-CC---A--CACAAAA--TATAGGCCATCC--CATATtaaagt
gi|12 : AT----GATA-TTT---GTGCTGCAA---CTGAAAG-CGCGAA---------TT--CG-TTAAAGC-A--A-----AT----GATCT-T-A-Aactgaaataaaggacatatttttgtgaaatatcaaaattatttatgatatttgtgctgcaactgaaagcgcgaattcgttaaagcaaatgatcttaatatgttatcca
gi|13 : ctggtgtatgtaatatgatattgacggtcctcgtgtaaacaaatgcatgttttccagaagaaagtggtcaaatagtttcaataagtttccattttaaaaataaccacacaaaatataggccatcccatatactgaaataaaggacatatttttgtgaaatatcaaaattatttAAAAT----------------CA----CAAA-------A--TTTGCCGAACATGGGAT-TAT-ATGA-TTT-ATTGTTA-AAAAAAATTAATTA--------TG--GTC-TG-GAT-CAATAG-----G------TATTTGTC-ATTGACAAATTTA-CA-TA---ATATTT---AAAT--TGTG------ATCA-A-TATT-T-ATCTCAA-TTGTTTG-T-A-AAT-T-A------AA-TTTTT--C--TTAAAAT-CTGATTTG---T--G-TA-ATG----TTGATTGtatgttatcca
gi|14 : gTCTAGAAAA-CACTT-----A----AAC----------------AT----CAAA----CA-A--TTTGCCAACTGAGGAAT-TAT-AGCA-TTC-GTTATTA-GACAAA------TACATACCCCTGTAGTC-AA-AAT-CAATAG-----T------TGTT-----AATGACAAATTTG-GG-GG---ATATTT---AGAT--ATTG------ATCCTT-T-TT-T-ATCTGAA-TTATTTG-T-A-AAT-T-C----T--A-TTTTT--
gi|15 : -TC---ATC--------AAT----AATA-TTA---GCGCAGAAA---GTGGA---CTTACA-CAT-----TT--CT-TAAATGG-A--A-----GT----CCTCT-TAA-AATT-TTTTTTTGCA----A--AATGTTG-T------AA------A---T-G-TAAAATTTGTCATTTGG-----CG---AGTT----ATTTTTCAA------------TTGGTAAC---TA--ATGTGTCGCTTGGGGAATTT
gi|16 : tttgttaaagctgaaaaTTGAATGAGGAATGCATCAAAA-ATT-GTTGTTT-GGAAAA------TA--------TGAGGTC-AA-AAC-TGACA-------------TATTTGTGGAGTGAC-AACTGG-CA-AA---CTATAT---AACTG-TTTAAATGCTACCA-ATT-TT-T-ATCTCAA-TAGTTTA-T-A-TAT--------T-CC-TTTTT--T--TA----T-TTGATA--------T-TA-ATG----TTGCTTAT
gi|17 : -TT---ATC--------CAT----AATAATTA---ATGCTACAA---CTGGA---ATATGA-TAT-----TC--TT-TAAAAGATA--A-----AT----GA----T-A----------TT---A----A--AAT--TG-T-C----AA-G------------------TTGGCATTCAA-----CA---AAAT----ATTTGTTGA------------TTGtt
gi|18 : aaaagacaccatctcgcttcctagtagaaaggatattttataaaagctcaat--------AAT----ACTA-TTA---ATGCTATAA---ATGGA---CGCGGA-CAT-----TTTATT-TAAAAGA-ATTATCCGTAT----AATCT-T-ACAATT-TCATTT---T----A--ATTT-TGTT-T----AATAA--CAAATT-G-TAAAACTTATAGCTCAA-----CA---AATT----GTTTGTAGG------------TCGGCATA---GAT-ATTTA-TGTTTtc
gi|19 : AAATTGTCA-----A-CTAA------------------------CAAT----CA-A--CTTATTGAATGAAGGAT-TAT-GGAA-CTT-GTCATTTTGAAAAA------CA--------TGAGATC-AA-AAT-CATTTG-----G------CATT------ACACCAAA------A-AA---A--------AATTACTTTG----------------T-C-ATC-CAATTTGTTTG-T----AT-T-AAAATT-CA-TTactga
gi|2 : caaacTAGGAAATCACCA-----A----AAT----------------GG----TAAA----TA-A--TTTGCTGAATGAGTGAT-TAT-AGAA-TTT-TTCTTTT-GACAAA------TA--------TGTGGTC-CA-AAT-CAATAG-----T------TTTTTGTT---C----AATTTGTCATAA---ATATT-----ATT--T----------------T-TT-T-AAC----------TG-T-A-AAT-T------T-AA-TTTTC--CATT-----T-CTGATATT-TTA--T-T--ATA----T---TTGTCAGAA--T-TTAGAT--TTA---TACAT------GTTTT-----ACAGAAATAAACA----T-GTTAAT----TGTTAATGAGTTGCCA--TTTAAACAGAAA-AA------CACAAAA--TGTGCTTCAT-T--GACG-T-AC-TC---------------------AATA-TTAGCCATTCTGTAAAAGCAGGAAATCATGAATTATACTAATT--CTACAAATGG-A--T-----GC----GA------A-AATT-TC-TTC---AAAGGA--AATG--A-T-CTTAAAATGA--CA---T-T-CAAAATGTATTAATTGAGGGATCATGGAATTTATCATTTATCAAATTATTTATCAATTGGCAAA---CA--ATTTGTTGTTTGTTGGATTTT
gi|20 : taA-----A-AAAATT----------------GG----CAAA----CA-A--TTTGTTGAATTTTGGCT-TAC-AAAA-TTT-GAGGTTT-GACAAA------TG--------TGAGGTT-AA-AAT-CAATAGGTATAT------CATTTACGGAACAACGAATT
gi|21 : aatcaatgagtgatttgttgaatCGAAGAAT-CAT-AGAA-ATT-GCCTTTG-GACAGA------TA--------TGAGATC-CA-AAC-CTATAG-----T------AAATTGTACATCGACAA--TTG-CA-AA---ATATTA---AA
gi|22 : AA----CA-A--TTTATTGAATGACGGAT-TAT-AGAA-TTCAAT--TTT-AACAAA------TA--------TGAGATC-AA-Aaa
gi|24 : aaatagagtgtcagttgatcAAA----TA-A--TTTTTCGAATTTGGGAT-TAT-AAAA-ATT-GACGTTT-GACAAA------TA--------TGAGGT
gi|3 : TAGGAAATCTCTA-----A----AAT----------------GA----CAAAATTATA-ACATTTGCCAAAGTAGTGAT-CAC-AGAA-ATT-GTTGTTT-GACAAG------TA--------TGAGGTC-CA-AAT-CTATAG-----T------T-TTTATt
gi|3 : accttcaagaattaggcacata-A-AATCT-A----T-AG-TTTTTATT--T-----T-CTGATGTA-TT------A-ATA----TTGATTGCC--ATA-T-TTAAAC--AA----TGGAT------ATTTTA-----CAGAAA-AAA-AACAAC-G---------TTTTAATAAGTTTCCA--TTTATAACAAAC-AA------CTCAAAA--GGTGTATCATCC--CACAT-----------CC--------AGA----AATA--------------AA---A-----------GA-TAA-----TT--TG-TAAAAAA-A--A-----ATTAAAAGTAA-T-A-AATTATCA-AT---A----ATTAATGCTG-T-A----ACTGG---A---T-GCTGATATTTCTTAAAAGG-----AAAT-AATTTTAAATTTGTCCA------------ATGACAAATTGTAATATTTGTTGTTTGGCAAATTtttctgatgtattaatattgattgccatatttaaacaatggatattttacagaaaaaaaacaacgttttaataagtttccatttataacaaacaactcaaaaggtgtatcatcccacatccagaaataaaagataatttgtaaaaaaaaattaaaagtaataaattatcaataattaatgctgtaactggatgctgatatttcttaaaaggaaataattttaaatttgtccaatgacaaattgtaatatttgttgtttggcaaattatttg
gi|3 : accttcaagaattaggcacatataggaaatctctaaaatgacaaaattataacatttgccaaagtagtgatcacagaaattgttgtttgacaagtatgaggtcc-TT---ATC--------AAT----AAT---TA---ATGCTGTAA---CTGGA---TGCTGA-TAT-----TT--CT-TAAAAGG-A--A-----AT----AATTT-T-A-AATT--------------------TG-T--C-C----AATGA--CAAATT-G-TAATATTTGTTGTTTGG-----CA---AATT----ATTTGatttg
gi|4 : accttcaagaattaggcacatataggaaatctctaaaatgacaaaattataacatttgccaaagtagtgatcacagaaattgttgtttgacaagtatgaggtccaaatctatagtttttattttctgatgtattaatattgattgccatatttaaacaatggatattttacagaaaaaaaacaacgttttaataagtttccatttataacaaacaactcaaaaggtgtatcatcccacatccagaaataaaagataatttgtaaaaaaaaattaaaagtaataaaC----------------AA----CAAG----TA-C--TTTGTAGGACGAAGGAT-CAT-GGAAACTC-GTCGTTC-GACAAA------CA--------CGAGATC-CA-ACTTCAATAG-----T------TATTTGTCAAAAGTCAAATTTG-CA-AA---ATATCCAAAAATT--T----------------T-TT-T-ATCTCAA-TTGTATGAT-A-ATT-C-A----T-TAGTCTCT--T--T-----T-CTGAGGTG---T--A-TACATG-----TAATTGGCCTTC--T-TTACAC--GAA---TATAT------ATTTT-----AC--AAA-ACA-A----T-G---------CGTCAGCAAGTTTCCA--TTAAAATAAAAA-TA---AAATTTAAAAACGGCACACCATCT--AACATC----------CT--------AA-----AAGA-TAA---ATGTTACAC---TTAAA---CGCGGG-AAT-----TC--CC-TAAAAGA-A--A-----AT----AATCTAT-A-AATTATCATTT---T----A--A
gi|5 : cacaaataatatgttcatAAAC----------------AA----CAAA----TG-A--TTTGTCGATCAAGGAGT-CGT-AGAT-TTT-GTCGTTC-AACAAA------TA--------TGAAGTA-AG-AAT-CAGAAG-----T------TATTAGTCCTATGGCAAATTTG-C--CT---CTATT-----ATT--TTTG------A--A-A-T-TT-T-TTTTT---TTTTTTA-TCACAAT--------T-CA-ATTTT--C--T-----T----------TTC--T----GTG----TGGATTATCCAGA--T-TTAAAC--AAA---TACAT------GTTTT-----ACAGAAA-AAAGA----A-C---------TGTCAGTAAGTTTCAAGTTTTGAAAAAAAACAA---AAACATAAAA--GGCGTACCATCCATGACATT-TCGTCAAAACCTAAAAAAAAATCATCAATA-TTT---ATGCAACAA---CTGGA---AGTGGA-CAT-----TT--CT-CAAAAGG-A--A-----AT----ACTCT-T-A-AA-----ATTT---A----A--
gi|6 : TGTG-TTT--T----ATG----TTTATTATC--TA--GATTAATT--AAG---GACTT------ACTTTATAGAAGAAAAA-AAA-A------G---------TGTAAATAAGTTTCTG--TTAAAAAAATAA-AACATAAGTGCAAAA--AGTACATCATCC--CACAt
gi|6 : gtcatttgatatattgagcaaataaatatgtgtagttatttgttgaaaataaatt---ACC--------ATT----AAAA-CTA---TTAT--CAA---TTGGT---TGCAGA-TTT-----TT--TT-TGAAAGG-A--A-----AA----AATTT-G-A-AATT-TCATTT---A----A--AATT-TG-T-C----Aacctgagatcaaagacgttttgttaaagattaaaaatcataaaaaccattaaaactattatcaattggttgcagattttttttgaaaggaaaaaatttgaaatttcatttaaaatttgtcacatttggcgttaatcagcaataaatttgtcatt
gi|7 : gtcatttgatatattgagcaaataaatatgtgtagttatttgttgaaaataaatttgtgttttatgtttattatctagattaattaaggacttactttatagaagaaaaaaaaagtgtaaataagtttctgttaaaaaaataaaacataagtgcaaaaagtacatcatcccacaacctgagatcaaagacgttttgttaaagattaaaaatcataaaaAGAAAATCACCACAAAGA-CAAATCATTTGTA---------GATTGTCAAA----TA-A--CTTACAAAACGAGGGAT-TAC-AGTA-TTT-GTTGTTC-AACCAA------AG--------TGAGATCCAA-AAT-CAAAAG-----T------TATATGTTGAATGATGAATTTG-CA-AA---ATATAT---ATAT--TTTG------GTGA-T-T-TT-TAATCTCGG-CTGTTTG-T-ATAAT-TCA----A-AA-TGTCT-----T-----T-ATAATG----------CA-ATGGAAATTAAATATC--C------TGAATTAAGA---TTTGT------TTTTTT----ACTAAAA-GAG-A----T-A---------TATCAATAAGACGCCA--T---------AA-AA---AGGCGCAAAT--GTTGCACCATAC--CACAcatttggcgttaatcagcaataaatttgtcatt
gi|8 : AGATCTAGGAAATTACCA-----A----AAC----------------AA----AAAA----TTTA--TTTGTAGATCGAGAGAT-GAT-AGAA-CTT-GTTGATT-GACAAA------TA--------TGAGGTC-CA-AAT-AAATAG-----T------TATTTGCCAAAC-ACAA---TA-CA-TG----TATTT---AA-------G------ATGA-G-TGTT-T-ATCTTCG-TTGTTTG-T-A-AAT-T-A----T-TT-TTTTT--T--T-----TTCTGATGAG-TCC--T-GA-ATG----AAAAT----------------AC--AAA---TACAT------ATCTTA----ACCCCAA-AAA-A----T-G---------GGTCTAAATGTTTATA--TTTAAAAAATAA-AA---TA----AACA--GGAGCACAACCT--CAAAT
gi|9 : ----CAAA----AA-A--ATTGTTGAACGTAGAAT-TAT-AGAA-TTT-GTTGTTT-GACAAA------TA--------TAAGGTT-AA-AGC-CAAGA-------------TACTTGCGGAATGGCAAATTAA-CA-AG---A--------AATC--T---------ATCA-A-T-C-----TGTCAA------TA-T-A-GAT-----------A-TTTTT--C--------T-CTGATTTA-TTTG-T-TA-TTG----GTGGTTTTC--AT--T-TTAAAA--AAA---TACATGTATACATTTT-----CCAAAAG-AAA-A----G-G---------TACCAAAAAGATTATA--TTTAAAAAA
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|23 ): CAAAAAATATGAGGCCCCCCCACACACTGAAATGAAGAGACATATTTCTATACAACAAAATTAATTT
Unaligned ( gi|25 ): TTGTCCAACATCCCCCCGAATAAATGATATTTTATAGTAGCTAAATATCATC
Alignments
lowQualScore : 44444444444444444444444444444444444 111111111111 11 333333333333333333333333333333 3333333333333 33333333333333333333333333333333 33333333 222222 3333333333333333 111111 4444444444444444444444444444 111 111111111 333333333333333333333333333333333333333333333333333 222222222 1111 333333333333333 2222222
lowQualScore : 0 88888888888888888888888888888888888 5555 2 33 3 2 2 2 2 1 66 666666 88888888 33 2 2 111111111111 11 0 2 2 555 333333333333333333333333333333 333 3 3 2 5 1111111111111 66666666666666666666666666666666 6666 33333333 99 555 999999 444444 33 3 7 2222222222222222 55 1 4 999999 2 777 0 55 2222222222222222222222222222 3 666 22 666 111 0 000000000 55 3 3 55 99999 8888888888 3 3 888888888888888888888888888888888888888888888888888 1 1 44444 222222222 77 2222 555555555555555 2222222 0 11
lowQualScore : . ................................... .... . .. . . . . . . .. ...... ........ .. . . ............ .. . . . ... .............................. ... . . . . ............. ................................ .... ........ .. ... ...... ...... .. . . ................ .. . . ...... . ... . .. ............................ . ... .. ... ... . ......... .. . . .. ..... .......... . . ................................................... . . ..... ......... .. .... ............... ....... . ..
lowQualScore : 2 33333333333333333333333333333333333 3333 5 44 4 2 2 2 2 3 77 444444 11111111 44 4 5 444444444444 99 8 9 9 000 777777777777777777777777777777 333 1 1 9 7 5555555555555 11111111111111111111111111111111 1111 77777777 22 888 666666 999999 44 6 3 4444444444444444 00 2 0 888888 3 111 5 55 0000000000000000000000000000 6 444 77 444 444 4 333333333 00 6 6 00 11111 9999999999 6 6 444444444444444444444444444444444444444444444444444 9 7 00000 999999999 99 1111 777777777777777 8888888 8 22
consensus : AGGTCTAGGAAATCACCA-----A-CAAAAC----------------GA----CAAA----TA-A--TTTGTCGAACGAGGGAT-CAT-AGAA-TTT-GTCGTTC-GACAAA------TA--------TGAGGTC-AA-AAT-CAATAG-----T------TATTTGTCGAACGACAAATTTG-CA-AA---ATATTT---AATT--TTTG------ATCA-A-T-TT-T-ATCTCAA-TTGTTTG-T-A-AAT-T-A----T-CA-TTTTT--C--T-----T-CTGATGTG-TTT--T-TA-ATG----TTGATTGTC--NN--T-TTAAAC--AAA---TACAT------ATTTTA----ACAGAAA-AAA-A----T-G---------TGTCAATAAGTTTCCA--TTTAAAAAAAAA-AA---AAGCGCAAAA--GGCGCACCATCC--CACATT-TC-TC---ACC--------AAT----AATA-TTA---ATGCTGCAA---CTGGA---CGCGGA-CAT-----TT--CT-TAAAAGG-A--A-----AT----AATCT-T-A-AATT-TCATTT---A----A--AATG-TG-T-C----AATGACA---TG-TA---AAATTTGTCGNTCG---------GCA--AATT----AT---------------TTGTCGATTGGCAAA---TA--ATTTGTTGTTTGGNGGATTTT
Reference ( family-225 ) : AGGTCTAGGAAATCACCA-----A-CAAAAC----------------GA----CAAA----TA-A--TTTGTCGAACGAGGGAT-CAT-AGAA-TTT-GTCGTTC-GACAAA------TA--------TGAGGTC-AA-AAT-CAATAG-----T------TATTTGTCGAACGACAAATTTG-CA-AA---ATATTT---AATT--TTTG------ATCA-A-T-TT-T-ATCTCAA-TTGTTTG-T-A-AAT-T-A----T-CA-TTTTT--C--T-----T-CTGATGTG-TTT--T-TA-ATG----TTGATTGTC--NN--T-TTAAAC--AAA---TACAT------ATTTTA----ACAGAAA-AAA-A----T-G---------TGTCAATAAGTTTCCA--TTTAAAAAAAAA-AA---AAGCGCAAAA--GGCGCACCATCC--CACATT-TC-TC---ACC--------AAT----AATA-TTA---ATGCTGCAA---CTGGA---CGCGGA-CAT-----TT--CT-TAAAAGG-A--A-----AT----AATCT-T-A-AATT-TCATTT---A----A--AATG-TG-T-C----AATGACA---TG-TA---AAATTTGTCGNTCG---------GCA--AATT----AT---------------TTGTCGATTGGCAAA---TA--ATTTGTTGTTTGGNGGATTTT
gi|1 : AGGTCTAGGAAAT-ACCA-----A-CAAAAC----------------GA----TAAA----TA-A--TTTGTTGATCGAGGGAT-CAT-AGAA-TTT-TTTGTTC-GACAAA------TA--------TTAGATT-AA-AAT-CCGGCG-----C------TATTTGTTGAATGACAAATTTG-CA-AA---ATATTT---AATT--TTTA------ATCA-A-T-TT-C-ATCCCAG-TTGTATG-T-A-AAT-T-A----TGCA-TTTTT--T--TG----TGTTGATGTGTTTT--T-TA-ATG----TTGATTGTC--TT--T-TTAAAC--AAA---TATAT------ATTTTA----ACAGTAA-AAA-A----T-C---------TGTCAATAACTTTCCA--TTTAAAAAAAAA-AA---AAGTGTAAAA--TGCATCCCATCC--CACATTATC-TC---ACC--------AAT----AATA-TTT---CTACTGCGA---CTCAA---CGCAGA-CAA-----TT--CT-TAAAAGG-A--A-----AT----TTTTT-T-A-AATT-CCATTT---G----A--AATG-TG-TCC----AATGACT---TA-TAATGAAATTTTCCAAATG---------ACA--AATT----AT---------------TTTTCGCTTGGCAAA---TA--ATTTGTTGTTCCAAGGATTTT
gi|10 : ACCA-----ATCAGAACC---------------AA----CAAA----TA-A--TTTGTGAAATGAGTT-T-CAT-A--A-TTT--TCTTTA-TATAAA------CA--------TGAGATT-CA-AAT-CAACAA-----T------TACGTATTAAAGGAAACATTTG-CA-TA---CTTTTT---TATT--TTC-------CTCA-A-T-TTGT-ATTTCAA-TATTTTG-T-C-AAT-T-C----T----TTTTT--C--T-----TCCTGA---G-TAC--T-TA-ATG----TTGATGGTC--CC----GTAAACCGAAA---CCAAT------AT----------------AAA-A----TCG---------TAT--ATAAGTGTCCA---TTAGAGAAAAT-AA---GAGCGTAAAA--TGCATACGATCC--CA
gi|11 : AGGTGTAGGAAATCACCA-----A-AACAACAAATAATTTCTGGAGTGA----TAAA----TA-A--TTTATTAAATGAGCAGC-CAT-TGAA-TTT-GCCGTTT-AACAAA------TT--------TGAGG-C-AATTAC-CAATAG-----TTACTGGTATTTGTTGATCAACAAATTTT-CA-AACAGATATAA---AAAT--TTTG------ATAA-A-TATT-A-ATGTGAA-TTGTCTG-T-A-AAT-T------C-CA-GTTTT--T--A-----T-TGGCTGTA--TT--T-AA-ATG----TTGCAGGT---GC--T-TTAAAC--AAACATTATAT------ATATTA----
gi|12 : c-CTGGTGTA-TGTAATATG-ATA----TTGACGGTC--CTCGT-GTAAAC--AAA---TGCAT------GTTTTC-----CAGAAG-AAA-G----T-GGTCAAATAGTTTCAATAAGTTTCCA--TTTTAAAAATAA-CC---A--CACAAAA--TATAGGCCATCC--CATATtaaagt
gi|12 : AT----GATA-TTT---GTGCTGCAA---CTGAAAG-CGCGAA---------TT--CG-TTAAAGC-A--A-----AT----GATCT-T-A-Aactgaaataaaggacatatttttgtgaaatatcaaaattatttatgatatttgtgctgcaactgaaagcgcgaattcgttaaagcaaatgatcttaatatgttatcca
gi|13 : ctggtgtatgtaatatgatattgacggtcctcgtgtaaacaaatgcatgttttccagaagaaagtggtcaaatagtttcaataagtttccattttaaaaataaccacacaaaatataggccatcccatatactgaaataaaggacatatttttgtgaaatatcaaaattatttAAAAT----------------CA----CAAA-------A--TTTGCCGAACATGGGAT-TAT-ATGA-TTT-ATTGTTA-AAAAAAATTAATTA--------TG--GTC-TG-GAT-CAATAG-----G------TATTTGTC-ATTGACAAATTTA-CA-TA---ATATTT---AAAT--TGTG------ATCA-A-TATT-T-ATCTCAA-TTGTTTG-T-A-AAT-T-A------AA-TTTTT--C--TTAAAAT-CTGATTTG---T--G-TA-ATG----TTGATTGtatgttatcca
gi|14 : gTCTAGAAAA-CACTT-----A----AAC----------------AT----CAAA----CA-A--TTTGCCAACTGAGGAAT-TAT-AGCA-TTC-GTTATTA-GACAAA------TACATACCCCTGTAGTC-AA-AAT-CAATAG-----T------TGTT-----AATGACAAATTTG-GG-GG---ATATTT---AGAT--ATTG------ATCCTT-T-TT-T-ATCTGAA-TTATTTG-T-A-AAT-T-C----T--A-TTTTT--
gi|15 : -TC---ATC--------AAT----AATA-TTA---GCGCAGAAA---GTGGA---CTTACA-CAT-----TT--CT-TAAATGG-A--A-----GT----CCTCT-TAA-AATT-TTTTTTTGCA----A--AATGTTG-T------AA----A---TG-TA---AAATTTGTCATTTG---------GCG--AGTT----AT---------------TTTTCAATTGGTAAC---TA--ATGTGTCGCTTGGGGAATTT
gi|16 : tttgttaaagctgaaaaTTGAATGAGGAATGCATCAAAA-ATT-GTTGTTT-GGAAAA------TA--------TGAGGTC-AA-AAC-TGACA-------------TATTTGTGGAGTGAC-AACTGG-CA-AA---CTATAT---AACTG-TTTAAATGCTACCA-ATT-TT-T-ATCTCAA-TAGTTTA-T-A-TAT--------T-CC-TTTTT--T--TA----T-TTGATA--------T-TA-ATG----TTGCTTAT
gi|17 : -TT---ATC--------CAT----AATAATTA---ATGCTACAA---CTGGA---ATATGA-TAT-----TC--TT-TAAAAGATA--A-----AT----GA----T-A----------TT---A----A--AAT--TG-T-C----AA-G------------------TTGGCATTCA---------ACA--AAAT----AT---------------TTGTTGATTGtt
gi|18 : aaaagacaccatctcgcttcctagtagaaaggatattttataaaagctcaat--------AAT----ACTA-TTA---ATGCTATAA---ATGGA---CGCGGA-CAT-----TTTATT-TAAAAGA-ATTATCCGTAT----AATCT-T-ACAATT-TCATTT---T----A--ATTT-TGTT-T----AATAACAAATTG-TA---AAACTTATAGCTCA---------ACA--AATT----GT---------------TTGTAGGTCGGCATA---GAT-ATTTA-TGTTTtc
gi|19 : AAATTGTCA-----A-CTAA------------------------CAAT----CA-A--CTTATTGAATGAAGGAT-TAT-GGAA-CTT-GTCATTTTGAAAAA------CA--------TGAGATC-AA-AAT-CATTTG-----G------CATT------ACACCAAA------A-AA---A--------AATTACTTTG----------------T-C-ATC-CAATTTGTTTG-T----AT-T-AAAATT-CA-TTactga
gi|2 : caaacTAGGAAATCACCA-----A----AAT----------------GG----TAAA----TA-A--TTTGCTGAATGAGTGAT-TAT-AGAA-TTT-TTCTTTT-GACAAA------TA--------TGTGGTC-CA-AAT-CAATAG-----T------TTTTTGTT---C----AATTTGTCATAA---ATATT-----ATT--T----------------T-TT-T-AAC----------TG-T-A-AAT-T------T-AA-TTTTC--CATT-----T-CTGATATT-TTA--T-T--ATA----T---TTGTCAGAA--T-TTAGAT--TTA---TACAT------GTTTT-----ACAGAAATAAACA----T-GTTAAT----TGTTAATGAGTTGCCA--TTTAAACAGAAA-AA------CACAAAA--TGTGCTTCAT-T--GACG-T-AC-TC---------------------AATA-TTAGCCATTCTGTAAAAGCAGGAAATCATGAATTATACTAATT--CTACAAATGG-A--T-----GC----GA------A-AATT-TC-TTC---AAAGGA--AATG--A-T-CTTAAAATGACA---TT-CA---AAATGTATTAATTGAGGGATCATGGA--ATTT----ATCATTTATCAAATTATTTATCAATTGGCAAA---CA--ATTTGTTGTTTGTTGGATTTT
gi|20 : taA-----A-AAAATT----------------GG----CAAA----CA-A--TTTGTTGAATTTTGGCT-TAC-AAAA-TTT-GAGGTTT-GACAAA------TG--------TGAGGTT-AA-AAT-CAATAGGTATAT------CATTTACGGAACAACGAATT
gi|21 : aatcaatgagtgatttgttgaatCGAAGAAT-CAT-AGAA-ATT-GCCTTTG-GACAGA------TA--------TGAGATC-CA-AAC-CTATAG-----T------AAATTGTACATCGACAA--TTG-CA-AA---ATATTA---AA
gi|22 : AA----CA-A--TTTATTGAATGACGGAT-TAT-AGAA-TTCAAT--TTT-AACAAA------TA--------TGAGATC-AA-Aaa
gi|24 : aaatagagtgtcagttgatcAAA----TA-A--TTTTTCGAATTTGGGAT-TAT-AAAA-ATT-GACGTTT-GACAAA------TA--------TGAGGT
gi|3 : TAGGAAATCTCTA-----A----AAT----------------GA----CAAAATTATA-ACATTTGCCAAAGTAGTGAT-CAC-AGAA-ATT-GTTGTTT-GACAAG------TA--------TGAGGTC-CA-AAT-CTATAG-----T------T-TTTATt
gi|3 : accttcaagaattaggcacata-A-AATCT-A----T-AG-TTTTTATT--T-----T-CTGATGTA-TT------A-ATA----TTGATTGCC--ATA-T-TTAAAC--AA----TGGAT------ATTTTA-----CAGAAA-AAA-AACAAC-G---------TTTTAATAAGTTTCCA--TTTATAACAAAC-AA------CTCAAAA--GGTGTATCATCC--CACAT-----------CC--------AGA----AATA---A---A----------------------AGA-TAA-----TT--TG-TAAAAAA-A--A-----ATTAAAAGTAA-T-A-AATTATCA-AT---A----ATTAATGCTG-T-A----ACTGG-A---TGCTG---ATATTTCTTAAAAG---------GAAATAATTTTAAAT---------------TTGTCCAATGACAAATTGTAATATTTGTTGTTTGGCAAATTtttctgatgtattaatattgattgccatatttaaacaatggatattttacagaaaaaaaacaacgttttaataagtttccatttataacaaacaactcaaaaggtgtatcatcccacatccagaaataaaagataatttgtaaaaaaaaattaaaagtaataaattatcaataattaatgctgtaactggatgctgatatttcttaaaaggaaataattttaaatttgtccaatgacaaattgtaatatttgttgtttggcaaattatttg
gi|3 : accttcaagaattaggcacatataggaaatctctaaaatgacaaaattataacatttgccaaagtagtgatcacagaaattgttgtttgacaagtatgaggtcc-TT---ATC--------AAT----AAT---TA---ATGCTGTAA---CTGGA---TGCTGA-TAT-----TT--CT-TAAAAGG-A--A-----AT----AATTT-T-A-AATT--------------------TG-T--C-C----AATGACAAATTG-TA---ATATTTGTTGTTTG---------GCA--AATT----AT---------------TTGatttg
gi|4 : accttcaagaattaggcacatataggaaatctctaaaatgacaaaattataacatttgccaaagtagtgatcacagaaattgttgtttgacaagtatgaggtccaaatctatagtttttattttctgatgtattaatattgattgccatatttaaacaatggatattttacagaaaaaaaacaacgttttaataagtttccatttataacaaacaactcaaaaggtgtatcatcccacatccagaaataaaagataatttgtaaaaaaaaattaaaagtaataaaC----------------AA----CAAG----TA-C--TTTGTAGGACGAAGGAT-CAT-GGAAACTC-GTCGTTC-GACAAA------CA--------CGAGATC-CA-ACTTCAATAG-----T------TATTTGTCAAAAGTCAAATTTG-CA-AA---ATATCCAAAAATT--T----------------T-TT-T-ATCTCAA-TTGTATGAT-A-ATT-C-A----T-TAGTCTCT--T--T-----T-CTGAGGTG---T--A-TACATG-----TAATTGGCCTTC--T-TTACAC--GAA---TATAT------ATTTT-----AC--AAA-ACA-A----T-G---------CGTCAGCAAGTTTCCA--TTAAAATAAAAA-TA---AAATTTAAAAACGGCACACCATCT--AACATC----------CT--------AA-----AAGA-TAA---ATGTTACAC---TTAAA---CGCGGG-AAT-----TC--CC-TAAAAGA-A--A-----AT----AATCTAT-A-AATTATCATTT---T----A--A
gi|5 : cacaaataatatgttcatAAAC----------------AA----CAAA----TG-A--TTTGTCGATCAAGGAGT-CGT-AGAT-TTT-GTCGTTC-AACAAA------TA--------TGAAGTA-AG-AAT-CAGAAG-----T------TATTAGTCCTATGGCAAATTTG-C--CT---CTATT-----ATT--TTTG------A--A-A-T-TT-T-TTTTT---TTTTTTA-TCACAAT--------T-CA-ATTTT--C--T-----T----------TTC--T----GTG----TGGATTATCCAGA--T-TTAAAC--AAA---TACAT------GTTTT-----ACAGAAA-AAAGA----A-C---------TGTCAGTAAGTTTCAAGTTTTGAAAAAAAACAA---AAACATAAAA--GGCGTACCATCCATGACATT-TCGTCAAAACCTAAAAAAAAATCATCAATA-TTT---ATGCAACAA---CTGGA---AGTGGA-CAT-----TT--CT-CAAAAGG-A--A-----AT----ACTCT-T-A-AA-----ATTT---A----A--
gi|6 : TGTG-TTT--T----ATG----TTTATTATC--TA--GATTAATT--AAG---GACTT------ACTTTATAGAAGAAAAA-AAA-A------G---------TGTAAATAAGTTTCTG--TTAAAAAAATAA-AACATAAGTGCAAAA--AGTACATCATCC--CACAt
gi|6 : gtcatttgatatattgagcaaataaatatgtgtagttatttgttgaaaataaatt---ACC--------ATT----AAAA-CTA---TTAT--CAA---TTGGT---TGCAGA-TTT-----TT--TT-TGAAAGG-A--A-----AA----AATTT-G-A-AATT-TCATTT---A----A--AATT-TG-T-C----Aacctgagatcaaagacgttttgttaaagattaaaaatcataaaaaccattaaaactattatcaattggttgcagattttttttgaaaggaaaaaatttgaaatttcatttaaaatttgtcacatttggcgttaatcagcaataaatttgtcatt
gi|7 : gtcatttgatatattgagcaaataaatatgtgtagttatttgttgaaaataaatttgtgttttatgtttattatctagattaattaaggacttactttatagaagaaaaaaaaagtgtaaataagtttctgttaaaaaaataaaacataagtgcaaaaagtacatcatcccacaacctgagatcaaagacgttttgttaaagattaaaaatcataaaaAGAAAATCACCACAAAGA-CAAATCATTTGTA---------GATTGTCAAA----TA-A--CTTACAAAACGAGGGAT-TAC-AGTA-TTT-GTTGTTC-AACCAA------AG--------TGAGATCCAA-AAT-CAAAAG-----T------TATATGTTGAATGATGAATTTG-CA-AA---ATATAT---ATAT--TTTG------GTGA-T-T-TT-TAATCTCGG-CTGTTTG-T-ATAAT-TCA----A-AA-TGTCT-----T-----T-ATAATG----------CA-ATGGAAATTAAATATC--C------TGAATTAAGA---TTTGT------TTTTTT----ACTAAAA-GAG-A----T-A---------TATCAATAAGACGCCA--T---------AA-AA---AGGCGCAAAT--GTTGCACCATAC--CACAcatttggcgttaatcagcaataaatttgtcatt
gi|8 : AGATCTAGGAAATTACCA-----A----AAC----------------AA----AAAA----TTTA--TTTGTAGATCGAGAGAT-GAT-AGAA-CTT-GTTGATT-GACAAA------TA--------TGAGGTC-CA-AAT-AAATAG-----T------TATTTGCCAAAC-ACAA---TA-CA-TG----TATTT---AA-------G------ATGA-G-TGTT-T-ATCTTCG-TTGTTTG-T-A-AAT-T-A----T-TT-TTTTT--T--T-----TTCTGATGAG-TCC--T-GA-ATG----AAAAT----------------AC--AAA---TACAT------ATCTTA----ACCCCAA-AAA-A----T-G---------GGTCTAAATGTTTATA--TTTAAAAAATAA-AA---TA----AACA--GGAGCACAACCT--CAAAT
gi|9 : ----CAAA----AA-A--ATTGTTGAACGTAGAAT-TAT-AGAA-TTT-GTTGTTT-GACAAA------TA--------TAAGGTT-AA-AGC-CAAGA-------------TACTTGCGGAATGGCAAATTAA-CA-AG---A--------AATC--T---------ATCA-A-T-C-----TGTCAA------TA-T-A-GAT-----------A-TTTTT--C--------T-CTGATTTA-TTTG-T-TA-TTG----GTGGTTTTC--AT--T-TTAAAA--AAA---TACATGTATACATTTT-----CCAAAAG-AAA-A----G-G---------TACCAAAAAGATTATA--TTTAAAAAA
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|23 ): CAAAAAATATGAGGCCCCCCCACACACTGAAATGAAGAGACATATTTCTATACAACAAAATTAATTT
Unaligned ( gi|25 ): TTGTCCAACATCCCCCCGAATAAATGATATTTTATAGTAGCTAAATATCATC
Alignments
lowQualScore : 44444444444444444444444444444444444 111111111111 11 333333333333333333333333333333 3333333333333 33333333333333333333333333333333 33333333 222222 3333333333333333 111111 4444444444444444444444444444 111 111111111 333333333333333333333333333333333333333333333333333 222222222 1111 333333333333333 2222222
lowQualScore : 0 88888888888888888888888888888888888 5555 2 33 3 2 2 2 2 1 66 666666 88888888 33 2 2 111111111111 11 0 2 2 555 333333333333333333333333333333 333 3 3 2 5 1111111111111 66666666666666666666666666666666 6666 33333333 99 555 999999 444444 33 3 7 2222222222222222 55 1 4 999999 2 777 0 55 2222222222222222222222222222 3 666 22 666 111 0 000000000 55 3 3 55 99999 8888888888 3 3 888888888888888888888888888888888888888888888888888 1 1 44444 222222222 77 2222 555555555555555 2222222 0 11
lowQualScore : . ................................... .... . .. . . . . . . .. ...... ........ .. . . ............ .. . . . ... .............................. ... . . . . ............. ................................ .... ........ .. ... ...... ...... .. . . ................ .. . . ...... . ... . .. ............................ . ... .. ... ... . ......... .. . . .. ..... .......... . . ................................................... . . ..... ......... .. .... ............... ....... . ..
lowQualScore : 2 33333333333333333333333333333333333 3333 5 44 4 2 2 2 2 3 77 444444 11111111 44 4 5 444444444444 99 8 9 9 000 777777777777777777777777777777 333 1 1 9 7 5555555555555 11111111111111111111111111111111 1111 77777777 22 888 666666 999999 44 6 3 4444444444444444 00 2 0 888888 3 111 5 55 0000000000000000000000000000 6 444 77 444 444 4 333333333 00 6 6 00 11111 9999999999 6 6 444444444444444444444444444444444444444444444444444 9 7 00000 999999999 99 1111 777777777777777 8888888 8 22
consensus : AGGTCTAGGAAATCACCA-----A-CAAAAC----------------GA----CAAA----TA-A--TTTGTCGAACGAGGGAT-CAT-AGAA-TTT-GTCGTTC-GACAAA------TA--------TGAGGTC-AA-AAT-CAATAG-----T------TATTTGTCGAACGACAAATTTG-CA-AA---ATATTT---AATT--TTTG------ATCA-A-T-TT-T-ATCTCAA-TTGTTTG-T-A-AAT-T-A----T-CA-TTTTT--C--T-----T-CTGATGTG-TTT--T-TA-ATG----TTGATTGTC--NN--T-TTAAAC--AAA---TACAT------ATTTTA----ACAGAAA-AAA-A----T-G---------TGTCAATAAGTTTCCA--TTTAAAAAAAAA-AA---AAGCGCAAAA--GGCGCACCATCC--CACATT-TC-TC---ACC--------AAT----AATA-TTA---ATGCTGCAA---CTGGA---CGCGGA-CAT-----TT--CT-TAAAAGG-A--A-----AT----AATCT-T-A-AATT-TCATTT---A----A--AATG-TG-T-C----AATGACA---TG-TA---AAATTTGTCGNTCG---------GCA--AATT----AT---------------TTGTCGATTGGCAAA---TA--ATTTGTTGTTTGGNGGATTTT
Reference ( family-225 ) : AGGTCTAGGAAATCACCA-----A-CAAAAC----------------GA----CAAA----TA-A--TTTGTCGAACGAGGGAT-CAT-AGAA-TTT-GTCGTTC-GACAAA------TA--------TGAGGTC-AA-AAT-CAATAG-----T------TATTTGTCGAACGACAAATTTG-CA-AA---ATATTT---AATT--TTTG------ATCA-A-T-TT-T-ATCTCAA-TTGTTTG-T-A-AAT-T-A----T-CA-TTTTT--C--T-----T-CTGATGTG-TTT--T-TA-ATG----TTGATTGTC--NN--T-TTAAAC--AAA---TACAT------ATTTTA----ACAGAAA-AAA-A----T-G---------TGTCAATAAGTTTCCA--TTTAAAAAAAAA-AA---AAGCGCAAAA--GGCGCACCATCC--CACATT-TC-TC---ACC--------AAT----AATA-TTA---ATGCTGCAA---CTGGA---CGCGGA-CAT-----TT--CT-TAAAAGG-A--A-----AT----AATCT-T-A-AATT-TCATTT---A----A--AATG-TG-T-C----AATGACA---TG-TA---AAATTTGTCGNTCG---------GCA--AATT----AT---------------TTGTCGATTGGCAAA---TA--ATTTGTTGTTTGGNGGATTTT
gi|1 : AGGTCTAGGAAAT-ACCA-----A-CAAAAC----------------GA----TAAA----TA-A--TTTGTTGATCGAGGGAT-CAT-AGAA-TTT-TTTGTTC-GACAAA------TA--------TTAGATT-AA-AAT-CCGGCG-----C------TATTTGTTGAATGACAAATTTG-CA-AA---ATATTT---AATT--TTTA------ATCA-A-T-TT-C-ATCCCAG-TTGTATG-T-A-AAT-T-A----TGCA-TTTTT--T--TG----TGTTGATGTGTTTT--T-TA-ATG----TTGATTGTC--TT--T-TTAAAC--AAA---TATAT------ATTTTA----ACAGTAA-AAA-A----T-C---------TGTCAATAACTTTCCA--TTTAAAAAAAAA-AA---AAGTGTAAAA--TGCATCCCATCC--CACATTATC-TC---ACC--------AAT----AATA-TTT---CTACTGCGA---CTCAA---CGCAGA-CAA-----TT--CT-TAAAAGG-A--A-----AT----TTTTT-T-A-AATT-CCATTT---G----A--AATG-TG-TCC----AATGACT---TA-TAATGAAATTTTCCAAATG---------ACA--AATT----AT---------------TTTTCGCTTGGCAAA---TA--ATTTGTTGTTCCAAGGATTTT
gi|10 : ACCA-----ATCAGAACC---------------AA----CAAA----TA-A--TTTGTGAAATGAGTT-T-CAT-A--A-TTT--TCTTTA-TATAAA------CA--------TGAGATT-CA-AAT-CAACAA-----T------TACGTATTAAAGGAAACATTTG-CA-TA---CTTTTT---TATT--TTC-------CTCA-A-T-TTGT-ATTTCAA-TATTTTG-T-C-AAT-T-C----T----TTTTT--C--T-----TCCTGA---G-TAC--T-TA-ATG----TTGATGGTC--CC----GTAAACCGAAA---CCAAT------AT----------------AAA-A----TCG---------TAT--ATAAGTGTCCA---TTAGAGAAAAT-AA---GAGCGTAAAA--TGCATACGATCC--CA
gi|11 : AGGTGTAGGAAATCACCA-----A-AACAACAAATAATTTCTGGAGTGA----TAAA----TA-A--TTTATTAAATGAGCAGC-CAT-TGAA-TTT-GCCGTTT-AACAAA------TT--------TGAGG-C-AATTAC-CAATAG-----TTACTGGTATTTGTTGATCAACAAATTTT-CA-AACAGATATAA---AAAT--TTTG------ATAA-A-TATT-A-ATGTGAA-TTGTCTG-T-A-AAT-T------C-CA-GTTTT--T--A-----T-TGGCTGTA--TT--T-AA-ATG----TTGCAGGT---GC--T-TTAAAC--AAACATTATAT------ATATTA----
gi|12 : c-CTGGTGTA-TGTAATATG-ATA----TTGACGGTC--CTCGT-GTAAAC--AAA---TGCAT------GTTTTC-----CAGAAG-AAA-G----T-GGTCAAATAGTTTCAATAAGTTTCCA--TTTTAAAAATAA-CC---A--CACAAAA--TATAGGCCATCC--CATATtaaagt
gi|12 : AT----GATA-TTT---GTGCTGCAA---CTGAAAG-CGCGAA---------TT--CG-TTAAAGC-A--A-----AT----GATCT-T-A-Aactgaaataaaggacatatttttgtgaaatatcaaaattatttatgatatttgtgctgcaactgaaagcgcgaattcgttaaagcaaatgatcttaatatgttatcca
gi|13 : ctggtgtatgtaatatgatattgacggtcctcgtgtaaacaaatgcatgttttccagaagaaagtggtcaaatagtttcaataagtttccattttaaaaataaccacacaaaatataggccatcccatatactgaaataaaggacatatttttgtgaaatatcaaaattatttAAAAT----------------CA----CAAA-------A--TTTGCCGAACATGGGAT-TAT-ATGA-TTT-ATTGTTA-AAAAAAATTAATTA--------TG--GTC-TG-GAT-CAATAG-----G------TATTTGTC-ATTGACAAATTTA-CA-TA---ATATTT---AAAT--TGTG------ATCA-A-TATT-T-ATCTCAA-TTGTTTG-T-A-AAT-T-A------AA-TTTTT--C--TTAAAAT-CTGATTTG---T--G-TA-ATG----TTGATTGtatgttatcca
gi|14 : gTCTAGAAAA-CACTT-----A----AAC----------------AT----CAAA----CA-A--TTTGCCAACTGAGGAAT-TAT-AGCA-TTC-GTTATTA-GACAAA------TACATACCCCTGTAGTC-AA-AAT-CAATAG-----T------TGTT-----AATGACAAATTTG-GG-GG---ATATTT---AGAT--ATTG------ATCCTT-T-TT-T-ATCTGAA-TTATTTG-T-A-AAT-T-C----T--A-TTTTT--
gi|15 : -TC---ATC--------AAT----AATA-TTA---GCGCAGAAA---GTGGA---CTTACA-CAT-----TT--CT-TAAATGG-A--A-----GT----CCTCT-TAA-AATT-TTTTTTTGCA----A--AATGTTG-T------AA----A---TG-TA---AAATTTGTCATTTG---------GCG--AGTT----AT---------------TTTTCAATTGGTAAC---TA--ATGTGTCGCTTGGGGAATTT
gi|16 : tttgttaaagctgaaaaTTGAATGAGGAATGCATCAAAA-ATT-GTTGTTT-GGAAAA------TA--------TGAGGTC-AA-AAC-TGACA-------------TATTTGTGGAGTGAC-AACTGG-CA-AA---CTATAT---AACTG-TTTAAATGCTACCA-ATT-TT-T-ATCTCAA-TAGTTTA-T-A-TAT--------T-CC-TTTTT--T--TA----T-TTGATA--------T-TA-ATG----TTGCTTAT
gi|17 : -TT---ATC--------CAT----AATAATTA---ATGCTACAA---CTGGA---ATATGA-TAT-----TC--TT-TAAAAGATA--A-----AT----GA----T-A----------TT---A----A--AAT--TG-T-C----AA-G------------------TTGGCATTCA---------ACA--AAAT----AT---------------TTGTTGATTGtt
gi|18 : aaaagacaccatctcgcttcctagtagaaaggatattttataaaagctcaat--------AAT----ACTA-TTA---ATGCTATAA---ATGGA---CGCGGA-CAT-----TTTATT-TAAAAGA-ATTATCCGTAT----AATCT-T-ACAATT-TCATTT---T----A--ATTT-TGTT-T----AATAACAAATTG-TA---AAACTTATAGCTCA---------ACA--AATT----GT---------------TTGTAGGTCGGCATA---GAT-ATTTA-TGTTTtc
gi|19 : AAATTGTCA-----A-CTAA------------------------CAAT----CA-A--CTTATTGAATGAAGGAT-TAT-GGAA-CTT-GTCATTTTGAAAAA------CA--------TGAGATC-AA-AAT-CATTTG-----G------CATT------ACACCAAA------A-AA---A--------AATTACTTTG----------------T-C-ATC-CAATTTGTTTG-T----AT-T-AAAATT-CA-TTactga
gi|2 : caaacTAGGAAATCACCA-----A----AAT----------------GG----TAAA----TA-A--TTTGCTGAATGAGTGAT-TAT-AGAA-TTT-TTCTTTT-GACAAA------TA--------TGTGGTC-CA-AAT-CAATAG-----T------TTTTTGTT---C----AATTTGTCATAA---ATATT-----ATT--T----------------T-TT-T-AAC----------TG-T-A-AAT-T------T-AA-TTTTC--CATT-----T-CTGATATT-TTA--T-T--ATA----T---TTGTCAGAA--T-TTAGAT--TTA---TACAT------GTTTT-----ACAGAAATAAACA----T-GTTAAT----TGTTAATGAGTTGCCA--TTTAAACAGAAA-AA------CACAAAA--TGTGCTTCAT-T--GACG-T-AC-TC---------------------AATA-TTAGCCATTCTGTAAAAGCAGGAAATCATGAATTATACTAATT--CTACAAATGG-A--T-----GC----GA------A-AATT-TC-TTC---AAAGGA--AATG--A-T-CTTAAAATGACA---TT-CA---AAATGTATTAATTGAGGGATCATGGA--ATTT----ATCATTTATCAAATTATTTATCAATTGGCAAA---CA--ATTTGTTGTTTGTTGGATTTT
gi|20 : taA-----A-AAAATT----------------GG----CAAA----CA-A--TTTGTTGAATTTTGGCT-TAC-AAAA-TTT-GAGGTTT-GACAAA------TG--------TGAGGTT-AA-AAT-CAATAGGTATAT------CATTTACGGAACAACGAATT
gi|21 : aatcaatgagtgatttgttgaatCGAAGAAT-CAT-AGAA-ATT-GCCTTTG-GACAGA------TA--------TGAGATC-CA-AAC-CTATAG-----T------AAATTGTACATCGACAA--TTG-CA-AA---ATATTA---AA
gi|22 : AA----CA-A--TTTATTGAATGACGGAT-TAT-AGAA-TTCAAT--TTT-AACAAA------TA--------TGAGATC-AA-Aaa
gi|24 : aaatagagtgtcagttgatcAAA----TA-A--TTTTTCGAATTTGGGAT-TAT-AAAA-ATT-GACGTTT-GACAAA------TA--------TGAGGT
gi|3 : TAGGAAATCTCTA-----A----AAT----------------GA----CAAAATTATA-ACATTTGCCAAAGTAGTGAT-CAC-AGAA-ATT-GTTGTTT-GACAAG------TA--------TGAGGTC-CA-AAT-CTATAG-----T------T-TTTATt
gi|3 : accttcaagaattaggcacata-A-AATCT-A----T-AG-TTTTTATT--T-----T-CTGATGTA-TT------A-ATA----TTGATTGCC--ATA-T-TTAAAC--AA----TGGAT------ATTTTA-----CAGAAA-AAA-AACAAC-G---------TTTTAATAAGTTTCCA--TTTATAACAAAC-AA------CTCAAAA--GGTGTATCATCC--CACAT-----------CC--------AGA----AATA---A---A----------------------AGA-TAA-----TT--TG-TAAAAAA-A--A-----ATTAAAAGTAA-T-A-AATTATCA-AT---A----ATTAATGCTG-T-A----ACTGG-A---TGCTG---ATATTTCTTAAAAG---------GAAATAATTTTAAAT---------------TTGTCCAATGACAAATTGTAATATTTGTTGTTTGGCAAATTtttctgatgtattaatattgattgccatatttaaacaatggatattttacagaaaaaaaacaacgttttaataagtttccatttataacaaacaactcaaaaggtgtatcatcccacatccagaaataaaagataatttgtaaaaaaaaattaaaagtaataaattatcaataattaatgctgtaactggatgctgatatttcttaaaaggaaataattttaaatttgtccaatgacaaattgtaatatttgttgtttggcaaattatttg
gi|3 : accttcaagaattaggcacatataggaaatctctaaaatgacaaaattataacatttgccaaagtagtgatcacagaaattgttgtttgacaagtatgaggtcc-TT---ATC--------AAT----AAT---TA---ATGCTGTAA---CTGGA---TGCTGA-TAT-----TT--CT-TAAAAGG-A--A-----AT----AATTT-T-A-AATT--------------------TG-T--C-C----AATGACAAATTG-TA---ATATTTGTTGTTTG---------GCA--AATT----AT---------------TTGatttg
gi|4 : accttcaagaattaggcacatataggaaatctctaaaatgacaaaattataacatttgccaaagtagtgatcacagaaattgttgtttgacaagtatgaggtccaaatctatagtttttattttctgatgtattaatattgattgccatatttaaacaatggatattttacagaaaaaaaacaacgttttaataagtttccatttataacaaacaactcaaaaggtgtatcatcccacatccagaaataaaagataatttgtaaaaaaaaattaaaagtaataaaC----------------AA----CAAG----TA-C--TTTGTAGGACGAAGGAT-CAT-GGAAACTC-GTCGTTC-GACAAA------CA--------CGAGATC-CA-ACTTCAATAG-----T------TATTTGTCAAAAGTCAAATTTG-CA-AA---ATATCCAAAAATT--T----------------T-TT-T-ATCTCAA-TTGTATGAT-A-ATT-C-A----T-TAGTCTCT--T--T-----T-CTGAGGTG---T--A-TACATG-----TAATTGGCCTTC--T-TTACAC--GAA---TATAT------ATTTT-----AC--AAA-ACA-A----T-G---------CGTCAGCAAGTTTCCA--TTAAAATAAAAA-TA---AAATTTAAAAACGGCACACCATCT--AACATC----------CT--------AA-----AAGA-TAA---ATGTTACAC---TTAAA---CGCGGG-AAT-----TC--CC-TAAAAGA-A--A-----AT----AATCTAT-A-AATTATCATTT---T----A--A
gi|5 : cacaaataatatgttcatAAAC----------------AA----CAAA----TG-A--TTTGTCGATCAAGGAGT-CGT-AGAT-TTT-GTCGTTC-AACAAA------TA--------TGAAGTA-AG-AAT-CAGAAG-----T------TATTAGTCCTATGGCAAATTTG-C--CT---CTATT-----ATT--TTTG------A--A-A-T-TT-T-TTTTT---TTTTTTA-TCACAAT--------T-CA-ATTTT--C--T-----T----------TTC--T----GTG----TGGATTATCCAGA--T-TTAAAC--AAA---TACAT------GTTTT-----ACAGAAA-AAAGA----A-C---------TGTCAGTAAGTTTCAAGTTTTGAAAAAAAACAA---AAACATAAAA--GGCGTACCATCCATGACATT-TCGTCAAAACCTAAAAAAAAATCATCAATA-TTT---ATGCAACAA---CTGGA---AGTGGA-CAT-----TT--CT-CAAAAGG-A--A-----AT----ACTCT-T-A-AA-----ATTT---A----A--
gi|6 : TGTG-TTT--T----ATG----TTTATTATC--TA--GATTAATT--AAG---GACTT------ACTTTATAGAAGAAAAA-AAA-A------G---------TGTAAATAAGTTTCTG--TTAAAAAAATAA-AACATAAGTGCAAAA--AGTACATCATCC--CACAt
gi|6 : gtcatttgatatattgagcaaataaatatgtgtagttatttgttgaaaataaatt---ACC--------ATT----AAAA-CTA---TTAT--CAA---TTGGT---TGCAGA-TTT-----TT--TT-TGAAAGG-A--A-----AA----AATTT-G-A-AATT-TCATTT---A----A--AATT-TG-T-C----Aacctgagatcaaagacgttttgttaaagattaaaaatcataaaaaccattaaaactattatcaattggttgcagattttttttgaaaggaaaaaatttgaaatttcatttaaaatttgtcacatttggcgttaatcagcaataaatttgtcatt
gi|7 : gtcatttgatatattgagcaaataaatatgtgtagttatttgttgaaaataaatttgtgttttatgtttattatctagattaattaaggacttactttatagaagaaaaaaaaagtgtaaataagtttctgttaaaaaaataaaacataagtgcaaaaagtacatcatcccacaacctgagatcaaagacgttttgttaaagattaaaaatcataaaaAGAAAATCACCACAAAGA-CAAATCATTTGTA---------GATTGTCAAA----TA-A--CTTACAAAACGAGGGAT-TAC-AGTA-TTT-GTTGTTC-AACCAA------AG--------TGAGATCCAA-AAT-CAAAAG-----T------TATATGTTGAATGATGAATTTG-CA-AA---ATATAT---ATAT--TTTG------GTGA-T-T-TT-TAATCTCGG-CTGTTTG-T-ATAAT-TCA----A-AA-TGTCT-----T-----T-ATAATG----------CA-ATGGAAATTAAATATC--C------TGAATTAAGA---TTTGT------TTTTTT----ACTAAAA-GAG-A----T-A---------TATCAATAAGACGCCA--T---------AA-AA---AGGCGCAAAT--GTTGCACCATAC--CACAcatttggcgttaatcagcaataaatttgtcatt
gi|8 : AGATCTAGGAAATTACCA-----A----AAC----------------AA----AAAA----TTTA--TTTGTAGATCGAGAGAT-GAT-AGAA-CTT-GTTGATT-GACAAA------TA--------TGAGGTC-CA-AAT-AAATAG-----T------TATTTGCCAAAC-ACAA---TA-CA-TG----TATTT---AA-------G------ATGA-G-TGTT-T-ATCTTCG-TTGTTTG-T-A-AAT-T-A----T-TT-TTTTT--T--T-----TTCTGATGAG-TCC--T-GA-ATG----AAAAT----------------AC--AAA---TACAT------ATCTTA----ACCCCAA-AAA-A----T-G---------GGTCTAAATGTTTATA--TTTAAAAAATAA-AA---TA----AACA--GGAGCACAACCT--CAAAT
gi|9 : ----CAAA----AA-A--ATTGTTGAACGTAGAAT-TAT-AGAA-TTT-GTTGTTT-GACAAA------TA--------TAAGGTT-AA-AGC-CAAGA-------------TACTTGCGGAATGGCAAATTAA-CA-AG---A--------AATC--T---------ATCA-A-T-C-----TGTCAA------TA-T-A-GAT-----------A-TTTTT--C--------T-CTGATTTA-TTTG-T-TA-TTG----GTGGTTTTC--AT--T-TTAAAA--AAA---TACATGTATACATTTT-----CCAAAAG-AAA-A----G-G---------TACCAAAAAGATTATA--TTTAAAAAA
blockSeqs : AAACAACAAATAATTTCTGGAGTGA ATTA T CA G G C A A C TT ATTAAT CATACCCC CA T T TTACTGG TA T T CAG ATAACTGTTTAAATGCTACCAATT GT T A C C TAAAATTCA CTTAAAATCTGATTTGTGTA GAAA CTCGT CG CAT GTATAC ATAGAA AG T C TGGTCAAATAG GT A C CATAAG G ACG AT TTCGTCAAAACCTAAAAAAAAATCATC A GCC TG AAG AAT TTATACTAA TA A T TT TCCGT TAAAAGTAA A C TCTTCAAAGGAAATGATCTTAAAATGACATTCA A G CATTT AGGGATCAT AT TTAA CATTTATCAAATTAT TTGTAAT GG
blockSeqs : CAAAGACAAATCATTTGTAGATTGT . . . T . . . . C A . . C . . GTATAT TG . . . AAAAATTTTGATAAATA TA . . . T CTATAG CATTTCTGATATTTTATT . AGAAT TA . . TA AG . G TGTTAAT . T . GAG A T . TACTC . . AG . AG CAT . . . . . AATCTA . . TCATTTTAATTTTGTTTAATAACAAATTGTA A G CATTC . . . . GAT TT
blockSeqs : ATCAGAACCAA . . . C . . . . T T . . A . . T GG . . . TTAAATTGTGATCAATA A . . . . CATTAG TTTTCTGATGAGTCCTGA . CTTCT . . . AA AG . . ACAACG . A . AAA A T . CCAGA . . TA . . TAT . . . . . GATCT . . ATCAATAATTAATGCTGTAACTGGATGCTG A A AGCTC . . . . TA GC
blockSeqs : AAAAATTGG . . . C . . . . T A . . T . . G GG . . . TTAGATATTGATCCTTT T . . . . TCAAAA CTCTGATTTATTTGTTA . CAGAT . . . C AG . . TCG . A . AAA T T . CCTAA . . TA . . CAT . . . . . CCTCT . . TTTTTTTGCAAAATGTTGTAAATGTA T A TAATT . . . . CA
blockSeqs : AAACAT . . . T . . . . T A . . A . . T AC . . . ATATATTTTGGTGATT T . . . . TATTT TATTGGCTGTATTTAA . ATAT . . . A AA . . TG . A . AGG T G . . . TG . . TAA . . . . . AATCT . . TGTCCAATGACAAATTGTA T C TAAAA . . . .
blockSeqs : AAATGG . . . T . . . . C T . . A . . G CA . . . TTTATTTTCCTCAAT T . . . . TCCA ATTTTCTGATGTATTA . TAGA . . . A TA . . AC . A . TA A G . . . TG . . TAT . . . . . AATTT . . TTAAAATTGTCAAG . G TGTTT . . . .
blockSeqs : AAATGA . . . T . . . . C T . . A . . T CC . . . TATTTTTGAAAT C . . . . TAAA TTTCTGAGGTGTATAC . GCT . . . A CC . . TA . T . A G A . . . TA . . AAT . . . . . ACTCT . .
blockSeqs : AAACAA . . . T . . . . G T . . C . . T TG . . . TTAAGATGAGTG T . . . . TCTA CTTCCTGAGTACTTA . ATT . . . A AA . . TG . T . . G G . . . AA . . CAT . . . . . AATTT . .
blockSeqs : ACTAA . . . T . . . . C G . . A . . T CA . . . CCAAAAATTTT T . . . . TTAA TTATTTGATATTA . CC . . . C . . . GG . . . . . G . . . . . . TTT . . . . . GA . .
blockSeqs : . . . C . . . . C T . . C . . T GG . . . AATCTATCAAT T . . . . TCT TTATAATGCA . C . . . . . . . G . . . . . . . . . . . . GA . .
blockSeqs : . . . C . . . . T T . . A . . T C . . . AATTACTTTG T . . . . TCC CTTTTCT . . . . .
blockSeqs : . . . A . . . . C T . . C . . T T . . . TATTTT . . . . . TCA .
blockSeqs : . . . C . . . . C C . . C . . T . . . . . . A .
blockSeqs : . . . A . . . . T C . . A . . . .
blockSeqs : . . . A . . . . T C . . C . . .
blockSeqs : T . . . . T T . . A .
blockSeqs : . . . . . T . .
blockSeqCons : AAACGA***************************** TTAAATTTTGATCAAT************** TCNA********* TTTTCTGATGTATTA***************** CAT***** A***** CCNNA***********************
originalCons : AGGTCTAGGAAATCACCA-----A-CAAAAC----------------GA----CAAA----TA-A--TTTGTCGAACGAGGGAT-CAT-AGAA-TTT-GTCGTTC-GACAAA------TA--------TGAGGTC-AA-AAT-CAATAG-----T------TATTTGTCGAACGACAAATTTG-CA-AA---ATATTT---AATT--TTTG------ATCA-A-T-TT-T-ATCTCAA-TTGTTTG-T-A-AAT-T-A----T-CA-TTTTT--C--T-----T-CTGATGTG-TTT--T-TA-ATG----TTGATTGTC--NN--T-TTAAAC--AAA---TACAT------ATTTTA----ACAGAAA-AAA-A----T-G---------TGTCAATAAGTTTCCA--TTTAAAAAAAAA-AA---AAGCGCAAAA--GGCGCACCATCC--CACATT-TC-TC---ACC--------AAT----AATA-TTA---ATGCTGCAA---CTGGA---CGCGGA-CAT-----TT--CT-TAAAAGG-A--A-----AT----AATCT-T-A-AATT-TCATTT---A----A--AATG-TG-T-C----AATGACA---TG-TA---AAATTTGTCGNTCG---------GCA--AATT----AT---------------TTGTCGATTGGCAAA---TA--ATTTGTTGTTTGGNGGATTTT
finalCons : AGGTCTAGGAAATCACCAAAACGA-----------------------------CAAA----TA-A--TTTGTCGAACGAGGGAT-CAT-AGAA-TTT-GTCGTTC-GACAAA------TA--------TGAGGTC-AA-AAT-CAATAG-----T------TATTTGTCGAACGACAAATTTG-CA-AA---ATATTTAAATTTTGATCAAT--------------TT-T-ATCTCAA-TTGTTTG-T-A-AATTCNA---------TTTTTTTTTCTGATGTATTA-----------------ATG----TTGATTGTCCAT-----TTAAAC--AAA---TACAT------ATTTTA-----CAGAAA-AAA-A----T-G---------TGTCAATAAGTTTCCA--TTTAAAAAAAAA-AA---AAGCGCAAAA--GGCGCACCATCC--CACATCCNNA-----------------------AATA-TTA---ATGCTGCAA---CTGGA---CGCGGA-CAT-----TT--CT-TAAAAGG-A--A-----AT----AATCT-T-A-AATT-TCATTT---A----A--AATG-TG-T-C----AATGACA---TG-TA---AAATTTGTCGNTCG---------GCA--AATT----AT---------------TTGTCGATTGGCAAA---TA--ATTTGTTGTTTGGNGGATTTT
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|23 ): CAAAAAATATGAGGCCCCCCCACACACTGAAATGAAGAGACATATTTCTATACAACAAAATTAATTT
Unaligned ( gi|25 ): TTGTCCAACATCCCCCCGAATAAATGATATTTTATAGTAGCTAAATATCATC
Alignments
lowQualScore : 1111111111111111111 111111111111 111111111111 11 111 22222222222 111111 111111 22222222222222222222222 3333333333 1111111111 222222222222222 111111 444444444444444444444444444 1111 111111111111111111 11111111111111111111 11111 1111111 99999999999999999999999999999999999999999999999999999999999 1111 2222222
lowQualScore : 66 33 9999999999999999999 5555 2 33 8888888 1 111111111111 2 2 2 2 1 66 666666 88888888 33 2 2 111111111111 11 0 2 2 888 888888 111 11111111111 333 3 000000 44 111111 3 3 3 7777 44444444444444444444444 6666 888888 2222222222 555 555 1111111111 6 11 7777 3 7777 7 333333333333333 55 1 4 999999 2 777 0 55 555555555555555555555555555 8888 22 0000 666666666666666666 55 3 0 3 33333333333333333333 3 22222 0 1111111 55 44444444444444444444444444444444444444444444444444444444444 3 666666 99 4444 1 2222222 0 11
lowQualScore : .. .. ................... .... . .. ....... . ............ . . . . . .. ...... ........ .. . . ............ .. . . . ... ...... ... ........... ... . ...... .. ...... . . . .... ....................... .... ...... .......... ... ... .......... . .. .... . .... . ............... .. . . ...... . ... . .. ........................... .... .. .... .................. .. . . . .................... . ..... . ....... .. ........................................................... . ...... .. .... . ....... . ..
lowQualScore : 99 44 4444444444444444444 3333 5 44 1111111 9 444444444444 2 2 2 2 3 77 444444 11111111 44 4 5 444444444444 99 8 9 9 999 222222 999 66666666666 333 1 666666 22 222222 1 3 3 1111 00000000000000000000000 1111 222222 5555555555 222 888 4444444444 7 55 7777 6 7777 3 333333333333333 00 2 0 888888 3 111 5 55 333333333333333333333333333 2222 44 6666 222222222222222222 00 6 2 6 11111111111111111111 6 88888 9 7777777 55 66666666666666666666666666666666666666666666666666666666666 7 333333 22 2222 0 8888888 8 22
consensus : AGGTCTAGGAAAT--CACCAAAAC-GACAA-------------------A----TA-A--TT-------TGTCGAA------------CGAGGGAT-CAT-AGAA-TTT-GTCGTTC-GACAAA------TA--------TGAGGTC-AA-AAT-CAATAG-----T------TATTTGTCGAACGACAAATTTG-CA-AA---ATA------TTT--AAATTTTGATCA-A-T-TT-T-ATCTCAA-TTGTTTGT----A-AAT--T-C--NATTTTT-T-T-T----TCTGA--TGTA----T------T--A--ATG----TTGATTG------TC--C--A-T-TTAAAC--AAA---TACAT------A---TTTT-ACAGAA----A-AA----A-AT---------G-----TGTCAATAAGTTTCCA--TTTAAAAAAAAA-AA---AAGCGCAAAA--GGCGCACCATCC--CACAT----------CCTGA------------AATATTA---ATGCTGCAA---CTGGA---CGCGGA-CAT-----TT--CT-TAAAAGG-A--A-----AT----AATCT-TA-AA--TT-TCATTT--A----A--AATG-T-G-T-C----AATGACA---TG-TA---AAAT------------------------TTNTCANTCGACA--AATT----ATTTGTCGATTGGCAAA---TA--ATTTGTTGTTTGGNGGATTTT
Reference ( family-225 ) : AGGTCTAGGAAAT--CACCAAAAC-GACAA-------------------A----TA-A--TT-------TGTCGAA------------CGAGGGAT-CAT-AGAA-TTT-GTCGTTC-GACAAA------TA--------TGAGGTC-AA-AAT-CAATAG-----T------TATTTGTCGAACGACAAATTTG-CA-AA---ATA------TTT--AAATTTTGATCA-A-T-TT-T-ATCTCAA-TTGTTTGT----A-AAT--T-C--NATTTTT-T-T-T----TCTGA--TGTA----T------T--A--ATG----TTGATTG------TC--C--A-T-TTAAAC--AAA---TACAT------A---TTTT-ACAGAA----A-AA----A-AT---------G-----TGTCAATAAGTTTCCA--TTTAAAAAAAAA-AA---AAGCGCAAAA--GGCGCACCATCC--CACAT----------CCNNA------------AATATTA---ATGCTGCAA---CTGGA---CGCGGA-CAT-----TT--CT-TAAAAGG-A--A-----AT----AATCT-TA-AA--TT-TCATTT--A----A--AATG-T-G-T-C----AATGACA---TG-TA---AAAT------------------------TTGTCGNTCGGCA--AATT----ATTTGTCGATTGGCAAA---TA--ATTTGTTGTTTGGNGGATTTT
gi|1 : AGGTCTAGGAAATACCAACAAAAC-GATAA-------------------A----TA-A--TT-------TGTTGAT------------CGAGGGAT-CAT-AGAA-TTT-TTTGTTC-GACAAA------TA--------TTAGATT-AA-AAT-CCGGCG-----C------TATTTGTTGAATGACAAATTTG-CA-AA---ATA------TTT--AATTTTTAATCA-A-T-TT-C-ATCCCAG-TTGTATGT----A-AATTAT-G--CATTTTT-T-TGT----GTTGA--TGTGTTTTT------T--A--ATG----TTGATTG------TC--T--T-T-TTAAAC--AAA---TATAT------A---TTTTAACAGTA----A-AA----A-AT---------C-----TGTCAATAACTTTCCA--TTTAAAAAAAAA-AA---AAGTGTAAAA--TGCATCCCATCC--CACATTATCTCA---CCAAT------------AATATTT---CTACTGCGA---CTCAA---CGCAGA-CAA-----TT--CT-TAAAAGG-A--A-----AT----TTTTT-TA-AA--TT-CCATTT--G----A--AATG-T-G-TCC----AATGACT---TA-TAATGAAAT------------------------TTTCCAAATGACA--AATT----ATTTTTCGCTTGGCAAA---TA--ATTTGTTGTTCCAAGGATTTT
gi|10 : AAT--CA--GAACC-AACAA-------------------A----TA-A--TT-------TGTGAAA------------TGAGTT-T-CAT-A--A-TTT--TCTTTA-TATAAA------CA--------TGAGATT-CA-AAT-CAACAA-----T------TACGTATTAAAGGAAACATTTG-CA-TA---CT-------TTT--TTATTTTCCTCA-A-T-TTGT-ATTTCAA-TATTTTGT----C-AAT--T-C--T-TTTTT-C-T-T----CCTGA---GTAC---T------T--A--ATG----TTGATGG------TC--C----C-GTAAACCGAAA---CCAAT------A---T----------------AA----A-ATC--------G-----TAT--ATAAGTGTCCA---TTAGAGAAAAT-AA---GAGCGTAAAA--TGCATACGATCC--CA
gi|11 : accAGGTGTAGGAAAT--CACCAAAAC-AACAAATAATTTCTGGAGTGATAAA----TA-A--TT-------TATTAAA------------TGAGCAGC-CAT-TGAA-TTT-GCCGTTT-AACAAA------TT--------TGAGG-C-AATTAC-CAATAG-----TTACTGGTATTTGTTGATCAACAAATTTT-CA-AACAGATA------TAA--AAATTTTGATAA-A-TATT-A-ATGTGAA-TTGTCTGT----A-AAT--T-C--CAGTTTT-T-A-T----T-GGC--TGTA----T------TTAA--ATG----TTGCAGG------TG--C----T-TTAAAC--AAACATTATAT------A---TATT-ATAAA
gi|12 : cCTGG--TGTA----TGTAATAT--G--ATA----TTGACGG------TC--CTCG-T-GTAAAC--AAA---TGCAT------G---TTTT-CCAGAA----G-AA----A-GTGGTCAAATAG-----TTTCAATAAGTTTCCA--TTTTAAAAATAA-CC---A--CACAAAA--TATAGGCCATCC--CATAT----------ACTGA------------AATAgt
gi|12 : ATATTT---GTGCTGCAA---CTGAAAG-CGCGAA---------TT--CG-TTAAAGC-A--A-----AT----GATCT-TA-Aaaggacatatttttgtgaaatatcaaaattatttatgatatttgtgctgcaactgaaagcgcgaattcgttaaagcaaatgatcttaatatgttatcca
gi|13 : ctggtgtatgtaatatgatattgacggtcctcgtgtaaacaaatgcatgttttccagaagaaagtggtcaaatagtttcaataagtttccattttaaaaataaccacacaaaatataggccatcccatatactgaaataaaggacatatttttgtgaaatatcaaaattatttatgAAAAT-CACAA-------------------A-------A--TT-------TGCCGAA------------CATGGGAT-TAT-ATGA-TTT-ATTGTTA-AAAAAAATTAATTA--------TG--GTC-TG-GAT-CAATAG-----G------TATTTGTC-ATTGACAAATTTA-CA-TA---ATA------TTT--AAATTGTGATCA-A-TATT-T-ATCTCAA-TTGTTTGT----A-AAT--T-A--AATTTTT-C-T-TAAAATCTGA--TTTG----TG-----T--A--ATG----TTGATTG------tatgttatcca
gi|14 : gTCTAGAAAA---CACTTAAAC-ATCAA-------------------A----CA-A--TT-------TGCCAAC------------TGAGGAAT-TAT-AGCA-TTC-GTTATTA-GACAAA------TACATACCCCTGTAGTC-AA-AAT-CAATAG-----T------TGTT-----AATGACAAATTTG-GG-GG---ATA------TTT--AGATATTGATCCTT-T-TT-T-ATCTGAA-TTATTTGT----A-AAT--T-C--TATTTTT-
gi|15 : ------------AATATTA---GCGCAGAAA---GTGGA---CTTACA-CAT-----TT--CT-TAAATGG-A--A-----GT----CCTCT-TA-AAATTT-TTTTTTGCA----A--AATG-TTG-T------AA----A---TG-TA---AAAT------------------------TTGTCATTTGGCG--AGTT----ATTTTTCAATTGGTAAC---TA--ATGTGTCGCTTGGGGAATTT
gi|16 : tttgttaaagctgaaaatcatcaatTTGAA------------TGAGGAATGCATCAAAA-ATT-GTTGTTT-GGAAAA------TA--------TGAGGTC-AA-AAC-TGACA-------------TATTTGTGGAGTGAC-AACTGG-CA-AACT-ATATAACTGTTT--AAATGCT-ACCA-ATT-TT-T-ATCTCAA-TAGTTTAT----A-TAT--T-C--C-TTTTT-T-T-A----TTTGA----TA----T------T--A--ATG----TTGCTTA------T
gi|17 : AT----------CCATA------------ATAATTA---ATGCTACAA---CTGGA---ATATGA-TAT-----TC--TT-TAAAAGATA--A-----AT----GA----TA------------TT--A----A--AAT--T-G-T-C----AA-G------------------------------------------TTGGCATTCAACA--AAAT----ATTTGTTGATTGtt
gi|18 : aaaagacaccatctcgcttcctagtagaaaggatattttataaaagctcaatttTATTA---ATGCTATAA---ATGGA---CGCGGA-CAT-----TTTATT-TAAAAGA-ATTATCCGTAT----AATCT-TACAA--TT-TCATTT--T----A--ATTT-T-GTT-T----AATAACAAATTG-TA---AAAC------------------------TTATAGCTCAACA--AATT----GTTTGTAGGTCGGCATA---GAT-ATTTA-TGTTTtc
gi|19 : aatacACAA-------------------T----CA-A--CT-------TATTGAA------------TGAAGGAT-TAT-GGAA-CTT-GTCATTTTGAAAAA------CA--------TGAGATC-AA-AAT-CATTTG-----G------CATT------ACACCAAA------A-AA---AAA------TT-----ACTTTG----------T-C-ATC-CAATTTGTTTGTATTAA-AAT--T-C---ATTactga
gi|2 : caaacaaattgtcaactaTAGGAAAT--CACCAAAAT-GGTAA-------------------A----TA-A--TT-------TGCTGAA------------TGAGTGAT-TAT-AGAA-TTT-TTCTTTT-GACAAA------TA--------TGTGGTC-CA-AAT-CAATAG-----T------TTTTTGTT---C----AATTTGTCATAA---ATA------TT-----ATTT---------T-TT-T-AAC----------TGT----A-AAT--T-T--AATTTTC-CAT-T----TCTGA--TATT----T------T--ATTATA----T---TTG------TCAGA--A-T-TTAGAT--TTA---TACAT------G---TTTT-ACAGAA----ATAA----ACAT---------GTTAATTGTTAATGAGTTGCCA--TTTAAACAGAAA-AA------CACAAAA--TGTGCTTCAT-T--GACGT----------ACTC-------------AATATTAGCCATTCTGTAAAAGCAGGAAATCATGAATTATACTAATT--CTACAAATGG-A--T-----GC----GA-----A-AA--TT-TC-TTC--AAAGGA--AATG---A-T-CTTAAAATGACA---TT-CA---AAATGTATTAATTGAGGGATCATGGAATTTATCATTTATCA--AATT----ATTTATCAATTGGCAAA---CA--ATTTGTTGTTTGTTGGATTTT
gi|20 : taAAAATTGGCAA-------------------A----CA-A--TT-------TGTTGAA------------TTTTGGCT-TAC-AAAA-TTT-GAGGTTT-GACAAA------TG--------TGAGGTT-AA-AAT-CAATAGGTATAT------CATTTACGGAACAACGAATT
gi|21 : aatcaatgagtgatttgttgaataa------------CGAAGAAT-CAT-AGAA-ATT-GCCTTTG-GACAGA------TA--------TGAGATC-CA-AAC-CTATAG-----T------AAATTGTACATCGACAA--TTG-CA-AA---ATA------TTA--AAA
gi|22 : A-------------------A----CA-A--TT-------TATTGAA------------TGACGGAT-TAT-AGAA-TTCAAT--TTT-AACAAA------TA--------TGAGATC-AA-Aa
gi|24 : aaatagagtgtcagttgatcAA-------------------A----TA-A--TT-------TTTCGAA------------TTTGGGAT-TAT-AAAA-ATT-GACGTTT-GACAAA------TA--------TGAGGT
gi|3 : TAGGAAAT--CTCTAAAAT-GACAA-------------------AATTATA-ACATT-------TGCCAAA------------GTAGTGAT-CAC-AGAA-ATT-GTTGTTT-GACAAG------TA--------TGAGGTC-CA-AAT-CTATAG-----T------T-TTTATt
gi|3 : accttcaagaattaggcacataTTTTTAT-T-T----TCTGA--TGTA----T------T--A--ATA----TTGATTG------CCA-T--A-T-TTAAAC---AA---TGGAT------A---TTTT-ACAGAA----A-AAAAACA-AC---------G-----TTTTAATAAGTTTCCA--TTTATAACAAAC-AA------CTCAAAA--GGTGTATCATCC--CACAT----------CCAGA------------AATA--A---A----------------------AGA-TAA-----TT--TG-TAAAAAA-A--A-----ATTAAAAGTAA-TA-AA--TTATCA-AT--A----ATTAATGCT-G-T-A----ACTGG-A---TGCTG---ATAT------------------------TTCTTAAAAGGAAATAATTTTAAATTTGTCCAATGACAAATTGTAATATTTGTTGTTTGGCAAATTtttctgatgtattaatattgattgccatatttaaacaatggatattttacagaaaaaaaacaacgttttaataagtttccatttataacaaacaactcaaaaggtgtatcatcccacatccagaaataaaagataatttgtaaaaaaaaattaaaagtaataaattatcaataattaatgctgtaactggatgctgatatttcttaaaaggaaataattttaaatttgtccaatgacaaattgtaatatttgttgtttggcaaattatttg
gi|4 : accttcaagaattaggcacatataggaaatctctaaaatgacaaaattataacatttgccaaagtagtgatcacagaaattgttgtttgacaagtatgaggtccaaatctatagC-AACAA-------------------G----TA-C--TT-------TGTAGGA------------CGAAGGAT-CAT-GGAAACTC-GTCGTTC-GACAAA------CA--------CGAGATC-CA-ACTTCAATAG-----T------TATTTGTCAAAAGTCAAATTTG-CA-AA---ATA------TCCAAAAATTT---------T-TT-T-ATCTCAA-TTGTATGA----T-AAT--T-CATTAGTCTC-T-T-T----TCTGAGGTGTA----T------A--C--ATG-----TAATTG------GC--CTTC-T-TTACAC--GAA---TATAT------A---TTTT-AC--AA----A-AC----A-AT---------G-----CGTCAGCAAGTTTCCA--TTAAAATAAAAA-TA---AAATTTAAAAACGGCACACCATCT--AACAT----------CCTAA------------AAGATAA---ATGTTACAC---TTAAA---CGCGGG-AAT-----TC--CC-TAAAAGA-A--A-----AT----AATCTATA-AA--TTATCATTT--T----A--Aatttg
gi|5 : cacaaataatatgttcatAAAC-AACAA-------------------A----TG-A--TT-------TGTCGAT------------CAAGGAGT-CGT-AGAT-TTT-GTCGTTC-AACAAA------TA--------TGAAGTA-AG-AAT-CAGAAG-----T------TATTAGTCCTATGGCAAATTTG-C--CT---CTA------TT----ATTTTTGA--A-A-T-TT-T-TTTTT---TTTTTTATC---ACAAT--T-C--AATTTTC-T-T-T----TCTG-------------------------TG----TGGATTA------TC--CAGA-T-TTAAAC--AAA---TACAT------G---TTTT-ACAGAA----A-AA----AGAA---------C-----TGTCAGTAAGTTTCAAGTTTTGAAAAAAAACAA---AAACATAAAA--GGCGTACCATCCATGACATTTCGTCAAAACCTAAAAAAAAATCATCAATATTT---ATGCAACAA---CTGGA---AGTGGA-CAT-----TT--CT-CAAAAGG-A--A-----AT----ACTCT-TA-AA-------ATTT--A----A--
gi|6 : --TGTT----T------T--A---TG----TTTATTA------TC--T--A-GATTAATT--AAG---GACTT------A---CTTT-ATAGAAGAAAA-AA----A-AA---------G-----TGTAAATAAGTTTCTG--TTAAAAAAATAA-AACATAAGTGCAAAA--AGTACATCATCC--CACAA----------CCTGA------------GAT-------------CAA-----AGA---CGT------T-----TT--GT-TAAA--G-ATTA-----AA----AATCA-TA-AA--AA-CCATTA--A----A--ACTATT-A-T-C----AATt
gi|6 : gtcatttgatatattgagcaaataaatatgtgtagttatttgttgaaaataaatttgCAA---TTGGT---TGCAGA-TTT-----TT--TT-TGAAAGG-A--A-----AA----AATTT-GA-AA--TT-TCATTT--A----A--AATT-T-G-T-C----Atggttgcagattttttttgaaaggaaaaaatttgaaatttcatttaaaatttgtcacatttggcgttaatcagcaataaatttgtcatt
gi|7 : gtcatttgatatattgagcaaataaatatgtgtagttatttgttgaaaataaatttgtgttttatgtttattatctagattaattaaggacttactttatagaagaaaaaaaaagtgtaaataagtttctgttaaaaaaataaaacataagtgcaaaaagtacatcatcccacaacctgagatcaaagacgttttgttaaagattaaaaatcataaaaaccattaaaactattatAGAAAAT--CACCACAAA-GACAA-------------------A----TC-A--TTTGTAGATTGTCAAATAACTTACAAAACGAGGGAT-TAC-AGTA-TTT-GTTGTTC-AACCAA------AG--------TGAGATCCAA-AAT-CAAAAG-----T------TATATGTTGAATGATGAATTTG-CA-AA---ATA------TAT--ATATTTTGGTGA-T-T-TT-TAATCTCGG-CTGTTTGT----ATAAT--T-C--AAAATGT-C-T-T----TATAA--TG-------------C--A--ATGGAAATTAAATA------TC--C-------TGAAT--TAA---GATTT------GTTTTTTT-ACTAAA----A-GA----G-AT---------A-----TATCAATAAGACGCCA--T---------AA-AA---AGGCGCAAAT--GTTGCACCATAC--CACAcatttggcgttaatcagcaataaatttgtcatt
gi|8 : AGATCTAGGAAAT--TACCAAAAC-AAAAA-------------------A----TTTA--TT-------TGTAGAT------------CGAGAGAT-GAT-AGAA-CTT-GTTGATT-GACAAA------TA--------TGAGGTC-CA-AAT-AAATAG-----T------TATTTGCCAAAC-ACAA---TA-C--AT---GTA------TTT--AA-----GATGA-G-TGTT-T-ATCTTCG-TTGTTTGT----A-AAT--TAT--TTTTTTT-T-T-T----TCTGA--TG----------------A--GTC----CTGAATG------AA--A--A-T-----AC--AAA---TACAT------A---TCTTAACCCCA----A-AA----A-AT---------G-----GGTCTAAATGTTTATA--TTTAAAAAATAA-AA---TA----AACA--GGAGCACAACCT--CAAAT----------
gi|9 : CAA-------------------A----AA-A--AT-------TGTTGAA------------CGTAGAAT-TAT-AGAA-TTT-GTTGTTT-GACAAA------TA--------TAAGGTT-AA-AGC-CAAGA-------------TACTTGCGGAATGGCAAATTAA-CA-AG-----------------AAATCT--ATCA-A-T-C-----TGTCAA------TAT----A-GAT--------A--TTT-T-T-C----TCTGA--TTTA----T------T------TG----TT-ATTGGTGGTTTT--C--ATT-TTAAAA--AAA---TACATGTATACA---TTTT-CCAAAA----G-AA----A-AG---------G-----TACCAAAAAGATTATA--TTTAAAAAA
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|23 ): CAAAAAATATGAGGCCCCCCCACACACTGAAATGAAGAGACATATTTCTATACAACAAAATTAATTT
Unaligned ( gi|25 ): TTGTCCAACATCCCCCCGAATAAATGATATTTTATAGTAGCTAAATATCATC