lowQualScore : 11111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 2222222222222222222222222
lowQualScore : 00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 55 11 1 2 2 7777777777777 11 1 1 11 4444 1 1 1 77777 1 1 4 1 22 1 1 1 1 222 1 55 1 1 1 4444 22 1 1 0000000000000000000000000 33 1 22 333 33 1 1 1 22 1 1 7777777777777777777777777 1 333333 1 11 1 2 11 11 2 111 333 11 1 44444444 555555555555555555555555555555555555555555555555555555555 2 222 1 2 2 1 222 22222 33 222 22222222 777 2 4444 22 11
lowQualScore : 44444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444 55 6 6 66 88 77 2 5 0 0 88 3 7 3333333333333 7 0 6 44 3 3 99 2 4 4 5555 0 3 5 7 55555 5 7 0 5 6 11 5 6 7 7 7 6 111 6 5 55 7 5 2 2 5 4444 7 3 8 4 11 8 6 99 6 5 9999999999999999999999999 6 6 6 00 6 7 33 6 6 6 6 888 22 6 5 7 5 77 2 4 5 5 3 6666666666666666666666666 2 4 3 5 777777 6 4 7 3 88 8 3 4 0 3 8 22 66 0 555 3 111 8 3 3 8 3 66 5 88888888 6 4 4 777777777777777777777777777777777777777777777777777777777 0 3 111 0 0 6 0 2 2 3 0 000 4 4 77777 4 00 111 00000000 3 2 6 6 6 2 2 000 2 0 3 2 4 2222 3 4 11 3 2 4 99
lowQualScore : ........................................................................................................ .. . . .. .. .. . . . . .. . . ............. . . . .. . . .. . . . .... . . . . ..... . . . . . .. . . . . . . ... . . .. . . . . . .... . . . . .. . . .. . . ......................... . . . .. . . .. . . . . ... .. . . . . .. . . . . . ......................... . . . . ...... . . . . .. . . . . . . .. .. . ... . ... . . . . . .. . ........ . . . ......................................................... . . ... . . . . . . . . ... . . ..... . .. ... ........ . . . . . . . ... . . . . . .... . . .. . . . ..
lowQualScore : 00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 00 0 0 55 00 00 5 5 0 0 00 0 3 3333333333333 3 7 7 77 3 3 33 5 0 0 0000 5 0 0 0 00000 0 0 0 0 0 00 0 0 0 0 0 0 000 0 0 00 0 5 5 5 0 0000 3 7 3 7 77 3 0 88 0 0 0000000000000000000000000 0 0 0 00 0 0 00 0 0 0 0 000 00 0 0 0 0 55 5 0 5 5 0 5555555555555555555555555 5 0 0 0 555555 0 7 3 3 33 7 0 3 5 5 0 55 00 5 000 5 000 0 5 5 0 5 00 0 55555555 0 0 0 000000000000000000000000000000000000000000000000000000000 0 0 555 5 0 0 0 5 5 0 5 555 0 0 00000 0 00 555 00000000 0 5 0 0 0 5 5 000 5 0 0 5 0 5555 0 0 00 0 5 0 55
consensus : TTTAACATTTCACTACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGACACCAAAGTATGGGACGGAGAGAGAGAGAGAGGTTAAATATTATATTTGTTTCACTTAAATAGATTAGCTGAAATAATACAATATAGCCATATTTAGTTTCAGGCACATGTATATCGTAGACAGTACTANNGTTTCATGTAACNNACATTTTACTAACCCNTGTGTTTCCCCTCTACCTCTGTAAACCACTNNTGTTATTTANATTACGTAACGTGTGAATCGAT-------------TGGTCATTACACTTTATAACTGACCATCGCATATGACCATCGTAGTTATGAATTATNCATTGATAAAC-ATATAAATAAAC-ATC-GAACAACTGTACTNGTNANAAGANAGGTAAGANTNACGATAAGATCAAT---GCTATCTTTATCTTCATAATATA-TTTCAACAATGATTCAATATTTTTTGATAAGGATGTATTTTATGGATAATTGTATTAACGTATTCCATTTGACTACCGTCGGCCATGTTTT--TTAATATTCGATTGTGTNATNACACTTTAT----AATTGACCATCGTATATGACCATCGTAGATATGAATTATNCATTCATAAAC-ATATAAATA-AATATCAATAAACAACT-GGCAACACTCTTTTAATTAATACACACGAAGTCGTGACGGTGGGGATCGAACCTACCCTGGTTCAATGCTTTAGATATATTTATACCACCATACCATGCGTTACACAATTTAGTTTTGTGAGTGAGTGTTTTATTTCATATTTTGTAAAAGAGAACTTGATTTNCTCCTNAAAATGAAATCGTNTNTATTATGCGCTNTCGGATGNCATATCCATNTNTNGGCCCTGCTGTCTTGTATATATCCGAGCATACGNTATCACAT-GG--ATCATTGGCTTCTNGATATTTGTTAGTT-AACAATACCTCAGAATAATTATTCATATTCATACCGAGTAAAA-TCGTTTACTGTTCGGGTCATACAGCATAGTTTTGTATTAATACGCCGTCAAACCCCACATCCATTCACTGGACGATTGGCACTGATAAACATACCCGTATTCATNGATCAAACGGNACGTGTCAAGTTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTAACGGTACATTAT-AATCNCATAATTATTCTTNTTACTGTTTTGAAACGTGTACTTGCTTACGTTGCTCTATTATCGCANCTGNGTTTAGTTTCTNTCGCGCCTTTTNGTAAAGGGCATACGAACAANACAAATCCGAACGACATGGCCAGGGCGAGCTGTTGTCAAGNTTTCGATACACACTATCAGTNGTCGGATTTTAAAGTTGCTTAGACATATNCCNNNTTTGCTGGATCTCTACGACTAGAATCGCNATGGTGCTGTCTGCTGCTCGGTTNATTGTGCATGTGGTGAAGGGTGTGGCTGCNANTGGTACTGCTACTGCTGTTGCTGCTGCTGTCTCCATGCGGGACGTTTGGTGGACGGTTTTNGTCGTCTTGCGGACGTTGTGGTNTCCTGNTAACGCCCNGCAGAACTGCTCCTGAGGTGAGTTAAAACATNTTCAAATCANTTTTNCATCANTGTTATNATCAGTNAGCAATNTTACATTACCCGGAGGCCAGGCCCGGTAAG
Reference ( gi|1 ) : TTTAACATTTCACTACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGACACCAAAGTATGGGACGGAGA--GAGAGAGAGGTTAAATATTATATTTGTTTCACTTAAATAGATTAGCTGAAATAATACAATATAGCTATATTTAGTTTCAGGCATATGTATATCGTAGACAGTACTATCGTTTCATGTAACTAATATTTTACTAACCCCTGTGTTTTCCCTCTACCTCT-TAAACT-CTTTTGTTATTTAAATTATGTAACGTGTGAATCGAT-------------TGGTCATTACACTTTATAACTGACCATCGCATATGACCATTGTAGTCATGACTTATTAATTGATAAAC-ATATAAATAAAC-ATTTAAACAACTATACTGATTATA--CCAGGTAAGAATAACGCTATGATCAATTATGATATATTTATCTTCATAATTTAGTTTAAATAATTGTTCAATATTGTTTGATAAGGGTGTAATTTTTGGATAATTGTATAAACATATTCCATTTTAGTACTGGCGGCCATGTTTTATTTTATATTTGATTATGTGATGACAGTTTATCATGAATTGACCATCGTATATGACCATTGTAGTTATGAATTATACATTCATAAAC-TTATTAATATAATATCAATAGAGAACCCAGTAA-AC------AACCGGCA-ACACGAAGCCGTGGCGGTGGAGATCGAACCTACCGGGGTCCTATGCTTTTAATACATTTGTACCATCATATCATGCAGAACACAATTACGTTTCGTTAGTGAGTGTTTTATTTCTTATTTTCTAAAAAAAA--TTGATTTCCTCCTTAAAATGAAATCATTTGTATAATGT---ATTGGATAC----TCTATGTTTTGGCCCTGTTGTCTTGTATGTATTCAAGTATACGTTATCACAT-GG--ATCATTGACTTGTAGGTATTTGTTAGTTCAACAATACCTCAGAATAATTGTTGATATATATACATAGTAAAAATCGTTTACTGTTTACGCCATA--ACATATTTTTGTGTTGATACGCCGTAAAACCCCACGTCACTTCACTGGACGATTTGCACTGATTAACATACCCGTATCCATTGATCAAACGAAACANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTAACGGTACATTAT-AATCACATAATTATTCTTGTTA-TGTTTTGGAACGTGTACTTACTTATGTTGCTCTATT-TCGCACCTGCGTTTAGTTTCTATCGCACTTTTTCGTAAAGGGCATACGAACAATACAAATCCGAACGACATGGTCAGGGTGAGCTGTTGTCAAGATTTCGATATACATTATCAGTTGTCTGATTTTAAAGTTGCTTAGACATTTATTAAATTTGCTGGATCTCTACGATTAGAATCGCAATGGTGCTGTCTGCTGCTCAGTTCATTGTGCATGTAATGAAAGGTGTGGCTACGACTGGTACTGCTACTGC---TGCTGCTGCTGTCTCCATGCGGGACGTTTGATGGACGATTTTGGT-GTCTTGCGGACGTTGTGGTTTCCTGGTAACGCTCTGCAGAACTGCTCCTGAGGTA----AAAACATTTTCAAATCAATTTAACATCATTGTTATGATCAGTAAGCAATTTTACATTACCCGGAGGCCAGGCCCGGTAAG
gi|7 : TTTAACATTTCACTACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGACACCAAAGTATGGGACGGAGAGAGAGAGAGAGGTTAAATATTATATTTGTTTCACTTAAATAGATTAGCTGAAATAATACAATATAGCCATATTTAGTTTCAGGCACATGTATATCGTAGACAGTACTATCGTTTCATGTAACTAATATTTTACTAACCCCTGTGTTTCCCCTCTACCTCT-TAAACT-CTTTTGTTATTTAAATTATGTAACGTGTGAATCGAT-------------TGGTCATTACACTTTATAACTGACCATCGCATATGACCATTGTAGTCATGACTTATTAATTGATAAAC-ATATAAATAAAC-ATTTAAACAAC
gi|2 : tGTACTAAAGTT--ATGTAACGTACATTTTATTAACCCATGTG-TTTCCCTTTAC
gi|16 : TCTGTAAACCACTAATGTTATTTACATTATGTA-CGTGTGAATCGATGAGTTCCGATTGATGGTCAATACACTC-ATGATTGACCATTGTATATATCTATCTTATATATGAATTACGCATTCATAAACAATGTAAATAAACTATC---ACACGTGTACTTGTAATAAGAGAGGTAAGACTAAgtaacgtgtgaatcgattggtcattacactttaaaactgaccatcgcatatgaccattgcagttatgaattatacattgatagacatataattaaacattggaacaactatactgattaaaacaggtaagagtcacgataagatcaatgctatctttatcttcataatatatttcaacaatgattcaatattttttgataaggatgtattttatggataattgtattaacgtattccatttgactaccgtcggccatgttttttaatatttgattatatgatgacactttataattgaccatggtatatgaccattgcagatatgaattatacattcatgagcttattaatataataaataaacaactggcaacactcttttaattaatacacacgaagtcgtgacggtggggatcgaacctaccctggttcaatgctttagatatatttataccaccataccatgcgttacacaatttagttttgtgagtgagtgttttatttcatattttgtaaaaaagaacttgatttccttctaaaaatgaaatcatttctattatgtgctattggataatttatgtttgagccctgttgtcttgtatatattcaagcatacgatatcacatcggttataattgacttcttgatatttgttagttaacaatacctcagaataattattcatattcataccgagtaaaatcgtttactgttcgggtcatacagcatagttttgtattaatacgccgtcaaaccccacatccattcactggatgattggcacatacccatattcatagatcaaacggtacgtgtcaagttgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaatcccattattcttattactgttttgaaacgtgtatttgtttacgttgctctattatcacaactgagtttaatttctctcgcgcctttttgtaagcatacgaacaaaacaaatccaaacgatatggccagagcgagctgttgtcaagttttcgatacacacgtaatcattaagttgcttagacatatttcacttttgctagatctctacgactagaatcaccatggtgctgtctgttgttcggttaattgtgcatgtggtgaagggtgtggctgctaatggtactgctactgctgttgctgctgctgtctccatgtgggacgtttggtggatggttttcgtcgtcttgtggacgttgtggtgtcctgttaacgcccagcagaactgctcctgaggtgagttaaaacatgttcaaatcatttttatatcagtattattatcagttagcaatattacattactcg
gi|2 : tataTTACGTAACGTGTGAATCGAT-------------TGGTCATTACACTTTAAAACTGACCATCGCATATGACCATTGCAGTTATGAATTATACATTGATAGAC-ATATAATTAAAC-ATTGGAACAACTATACTGATTAAA--ACAGGTAAGAGTCACGATAAGATCAAT---GCTATCTTTATCTTCATAATATA-TTTCAACAATGATTCAATATTTTTTGATAAGGATGTATTTTATGGATAATTGTATTAACGTATTCCATTTGACTACCGTCGGCCATGTTTT--TTAATATTTGATTATATGATGACACTTTAT----AATTGACCATGGTATATGACCATTGCAGATATGAATTATACATTCATGAGC-TTATTAATATAATA--AATAAACAACT-GGCAACACTCTTTTAATTAATACACACGAAGTCGTGACGGTGGGGATCGAACCTACCCTGGTTCAATGCTTTAGATATATTTATACCACCATACCATGCGTTACACAATTTAGTTTTGTGAGTGAGTGTTTTATTTCATATTTTGTAAAAAAGAACTTGATTTCCTTCTAAAAATGAAATCATTTCTATTATGTGCTATTGGATAA----TTTATGTTTGAGCCCTGTTGTCTTGTATATATTCAAGCATACGATATCACATCGGTTATAATTGACTTCTTGATATTTGTTAGTT-AACAATACCTCAGAATAATTATTCATATTCATACCGAGTAAAA-TCGTTTACTGTTCGGGTCATACAGCATAGTTTTGTATTAATACGCCGTCAAACCCCACATCCATTCACTGGATGATTGGCAC--------ATACCCATATTCATAGATCAAACGGTACGTGTCAAGTTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAATCCCAT---TATTCTTATTACTGTTTTGAAACGTGTATTTGTTTACGTTGCTCTATTATCACAACTGAGTTTAATTTCTCTCGCGCCTTTTTGTAA---GCATACGAACAAAACAAATCCAAACGATATGGCCAGAGCGAGCTGTTGTCAAGTTTTCGATACACAC-----GTAATC--ATT---AAGTTGCTTAGACATATTTCACTTTTGCTAGATCTCTACGACTAGAATCACCATGGTGCTGTCTGTTGTTCGGTTAATTGTGCATGTGGTGAAGGGTGTGGCTGCTAATGGTACTGCTACTGCTGTTGCTGCTGCTGTCTCCATGTGGGACGTTTGGTGGATGGTTTTCGTCGTCTTGTGGACGTTGTGGTGTCCTGTTAACGCCCAGCAGAACTGCTCCTGAGGTGAGTTAAAACATGTTCAAATCATTTTTATATCAGTATTATTATCAGTTAGCAATATTACATTACTCGaagataaat
gi|7 : gtactaaagttatgtaacgtacattttattaacccatgtgtttccctTCGATTG-GTCATTACACTTTAT----AACTGACCATCGCATATGACCATTGTAGTCATGACTTATTAATTGATAAAC-ATATAAATA-AACAT
gi|16 : ttttaacatttcactacnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngacaccaaagtatgggacggagagagagagagaggttaaatattatatttgtttcacttaaatagattagctgaaataatacaatatagccatatttagtttcaggcacatgtatatcgtagacagtactatcgtttcatgtaactaatattttactaacccctgtgtttcccctctacctcttaaactcttttgttatttaaattatgtaacgtgtgaaTCATGA-TTGACCATTGTATATATCTATCTTATATATGAATTACGCATTCATAAACAATGTAAATAAACTATCAttaaacaac
gi|19 : tatatctgtaaaccactaatgttatttacattatgtacgtgtgaatcgatgagttccgattgatggtcaatacacAAGAAA--TTGATTTGCTCTTTAAAA-GAAA-CGTGTG------GC---TTCGGATGTCATATCCATCTATTGA-CCTACTGTCT------TATCCGAGCATATGCTA-CACAT-AG--AACATTGGTTT-TAGATcacgtgtacttgtaataagagaggtaagactaaaagataaat
gi|3 : TACGTTATCACAT-GG--ATCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN--NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGACGATTGGCACTGATAAACATACCCGTATTCATTGATCAAACGAAACANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTAACGGTACATTAT-AATCACATAATTATTCTTTTTA-TGTTTTGAAACGTGTACTTACTTATGTTGCTCTATT-TCGCACCTGCGTTTAGTTTCTATCGCATTTTTTGGTAAAGGGCATACGAACAATACAAATCCGAACGACATGGTCAGGGTGAGCTGTTGTCAAGATTTCGATATACATTATCAGTTGTCGGATTTTAAAGTTGCTTAGACATATACTTAATTTGCTGGATCTCTACGATTAGAATCGCAATGGTGCTGTCTGCTGCTCAGTTCATTGTGCATGTGATGAAGGGTGTGGCTGCGACTGGTACTGCTACTGCTGTTGCTGCTGCTGTCTCCATGCGGGACGTTTGATGGACGATTTTGGT-GTCTTGCGGACGTTGTGGTTTCCTGGTAACGCTCTGCAGAACTGCTCTTGAGGTA----AAAACATTTTCAAATCAATTTTTCATCATTGTTATGATCAGTAAGCAA-TTTACATTACCCGGAGGCCAGGCCCGGTAAG
19 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|4 ): CTTTAGAAATTCCATTTGAACGTAGTGAATTATAGGCGTAGGATCGTTTCTGTAAATGGAAGATGGGTAACCTAGGGAGTGAGATGCTGCACATTTAAGTGAGTGTTAAGGATAAATTATGATTGATATTTACTCCAAAGTATTTTGTGAGTTTAAAACATTTTTTGTGTAAAACAAACGGTAATATGTATTAAAAAATAACATTCACCTAGTATTTAAACCGGTTCGTCAGCACATCATGCACTGGGAGCCTAGGCATAATGATGAAAGAGTGTGGGAGAGTAACATGTTAATAATATACGTTTTTATTTAACACACGTACGCAAGTATCGCACGCACACATGCACAGGCGTTCCATACCCGAAAAAAATACACACACAAAACTGAACAAAATATGCAGGAAACCAGGGCACATGGGAAAATGCGACAACCTCTCGCACTGATTTGGGTATGGGATGCCTCGCTCAGAATGTGTTATATATTCTTAACCTATTGCTAGATACAAATAAGATATTAGGATGAGAAAACGGCTGTTACTTAAATAATTTAATATATTGTGACTTTAAAAGTATTAAATAAACAGACTGTCACGTAAAAACTTAGAAAAAGTTATATGATGTAACAAAGAAACCCCACCCCCTGATTTTATACTCAAGTCATGGAAGATGGTTTCATGCTGGCGGGGACACGGGAGATCTCCTCCGAAATTTTTATGACTAAAAAATAAATGTTCATTTTATTTAGTTTTAGAGAAAATAGATGTTAATATTTATTCTATTTTGTTATTTTTAAATGCTTACAAATTAACATACAATACTCTTAGAAAATATACAATCAGATGTATTTTAAAGATAAACCGAGTTTCAAACCCGATACCTCTTCCATTACAAGACAAAACGTGAAGGATAGTGTTGGACGAGGCTGGTGGCGATATTGGGGACTCCCTCGGATTTTTTTTTGTATTTAAACACCAAAGGCCTGACTGAGTGAGAATTTAAGACAAATATATGGATGGTGAATCAGGAATTTGGTATTATGTGACGATAAACATTGCTATTAAAATATTGGGGGAGGGCAAAGTATATGCATGCTGGCCCCCAACATGAACATTGATGGGGTTGGGTAGAGGCACTCCGACTGCTCCCGGCTCCTACACCTATAGTAATAAAAAAACGGATCACAC
Unaligned ( gi|5 ): TTTAAAAATGAGCGTCCAATGGGTTTTAAACAACATGCATGACAACATGACAAAACAAAACGTGAGGAAGAATATGAAGAGGGCTGGTGGCAGCACTGGATATTAACCTGAAAAAATATGATATTTAAAATAACAAATCCAGCATTCTAGTGAGTTTTGAGGGGTAAAAAATATGTTGTCATTTACTCCATATGTTTGATATCGTGTGACCTTTAGACATACAAAATATTGGGGTGGGGGACAAAGTTTATGCAGGACCCCCAACCCGAAATGGGAGGGAGTTCCTCTGGCCTCCGGCTCCTACGCCTTTGTTACTCCAGTGCGGGAGAGGATGTCCCTTTGCTGGTTGGGGTATGGGCGGCCTCGTATGGAAAATCTTTATATATTAAAAATTAAATACTGCATGTAGGTAACAATAAGGTGGAAAAAGTTGTTGTTTACTCCAATATTTTTTGTGACAATTAAACGGTTTATTAAGAAAAAATATGTATTAAAAATGAGCGTCCACTGGATTTAAACCTCATGTATGACAACTGTGAGAAAGAATACGAAGAGGGCTTGCGATGGTACGGGGTCTTAACCTGGAAAATTTAGATATATTAAAACAAAAAATGCTGCATTTGTGGGGGGGGGGGGATAAAATATGCTCTATTATTACCCCAAAATTTTGGTATTTTGTGACCTTTAAACATTTTTTATCAAAGTATTGGGCGAGGGTGCATAGTATAAGCTGGCCAACCTGAGTACTGTAGACGGGGACGGCTCCCATTGCCTCGTCCAGGTCGGCTCCTACGCCT
Unaligned ( gi|6 ): ATACCCAATAGGAACGATATTCGTTGCCCTTAGGGGATTCTCTGCTTATAGGGGTATGGGGACTTCTCTCCGAAAGTTTGGATATCTTAATAAGCAAATACTGCATTCAAGTTAGTTTAAAGGGGAAACGATTCTTAATTACATCAATGTTGGAGGGGGTGTCCCCTGCCGGTGGGGCTACTGGCCTATCCAGGAAAAAATAGATCAAATACAAAAAATATATAAGTTGTATTAAGATATGAGCATCCAAAATGTTTAAATCACTTGCATGACAAAACCTTAGGAAGTGAGGAAGAGTGTGAATAGTACTCGTGGCGATACGGGGTTTTAAACCAGACTTTTTTATATTTAGAACAACAAATGTTGCATTCTAGTGATTGTTTAGCTTAAAAATATGTTGTCATTTACTCCAGATGTTTGGTTTTGGTTTTTGTGACACTTAGGCATTTTTATCAAAATATTAGGGGGATTGGGATGGGCAAAGTATAAACTGGCCCCAAACCTGAACATTGGTGGAGCGGCCCCTTCTGGTCCCCGTGGCTCCTACGCA
Unaligned ( gi|8 ): TATATATATATTGTCAGAAATGACACTATCAAGCTCATGTTAGAAATTGCATTAGAAATTTCATTTCAAATGTATTACATGTATTATAGGCGTATTATCGTTTCAATAATTGGAGGTGGGCAACCACGGGAGCGGGAGGTTGTGAGGGACACCTCCCCTCCGGTTGGTTGTAATACAAAGGCTTCCCTAAGAATATTTCGATATCTTAAACATTAAAAGCTGTGTTTTAATGAGTATTTAGTGAGTTTATTTACTTCCCAATAGTTTATATAGTGAATTTTAAACGTTTTATGAAGTAAAAACGATAATATGTATAAAAAAACGATCTTTAACCGGACTTAAATAACGGTACCTCAAGCACTGGAGCCACAAATGGTAAGATAGGGTTGATGGGGAAAATTTATTACGAAACATTTCAGTA
Unaligned ( gi|9 ): ATATAATATAAATGACATTTCGATTACAAAGTGAATTGTACAAATTCCGACAAACGGAGTATGTTTTGTTCACGGCCGTAGATGAGTTTCAATTATTGAGGAGGGGAGGGCATTTTGGTGTATCCCCTCCCGTTGTTGATGGGGGATATCCTTGAACATTTTGATATATTCAACACCAAATGCTGCATAATAGGAAGATGTTATGAATAATTTTAGGAGTTTTATTTACTCATGGGACCAATATTGTGTGACTTAAATGTTTTATTAAGT
Unaligned ( gi|10 ): ACGGTGAGGCAAAAGGTTAGGAAAAGCGTGTAGGTATGCTGGTAGCATGTGGTGACCTCCTTAGGAAATTGTGATATTTAAAATACCAAATGCTGCATTCTAATGAGCTGTAAGGATAAAATAATATGCTTGTCATTTATTCCAGATGATTGTTTTTTTTTTTCACTTTTAATTATTGTTATTAAGATAAGGGATATATATGCTGCCCCTCCTTAACATTAGAAGGGGGGCCAACCCAACTGCTACCTCCCCTGGCTCCTATGCTT
Unaligned ( gi|11 ): TTTCCTCAGAAAGAATACAAGACTTTATTTAAAAAAGACGAAGGTCCCCGGGATTTAAAACACGCACGCAAGTTGCGATCCAAAACGTGACGGAGAGTGTAGAAGGCTGGCGATAGTGGGGCGCCCCCTGAAATATTTGATGTTTGGAACACCAAATTTTGCATTCTAGTGATTTGTTTAGTGATTATCGTTTACTTCAGATGTTTTATATTTTGCGACGTTTTTTTTTTTATATAAAACTATCTGGGTGG
Unaligned ( gi|12 ): GAGTGTATGAGGAGAGAGTGTATGAGGAGAGAATGTTGGATCGAGCTAATGGCGGCACACAACCAAGCGGAATTTTTTTATATTTAAAACAACAAATGCTGCATTATAGTGAGTTGTTAGGGTAAAGAATGAGGTGTTGTCATTAAGGTGTTTGGTATATTGTGACTTTAAAACATTTTTATCAAAATATTGGGGTGGGGTGGCAACTTGAACATTGGTGGGAGGGGATAGGGCGC
Unaligned ( gi|13 ): AATATTGGGGGTAGGAGCAACGTGTATGCTCCCCCATCTTAACATTGAAGTGGTTGGGTGGATCCCCAACCACACACGAGTTTTTCGCTTACGGTAATAAATATTGATCACAGAGGTTTTCATAAATTGGAATGAAGGCCAATGTAATGCATAACAGGTCATATTTGACAACCTGTACTTTTGGTGTAAAACAACTCACTAGTCATATGCATGAGCAACTGCGTAGAACT
Unaligned ( gi|14 ): GTTTTAAACCACATGAATGACAAGCCAAAATGTAAGGAAGAGTGTGAAGGGGTGGGATCCGATACGGGGTGTTAACCTGGACTTTTTTATATTTAAAACAAAAAATGCTGCATTCTAGTGATTTTAGGGTAAAAATATGTTGTCATTTACTCCAGATGTTTGGTATTTTGTGACCTTTTTACATTTTTATAAAAAAAATGGGGGGGGGGGGCAAAGTATTTGC
Unaligned ( gi|15 ): TATTTAGAAACAATAAATGTTGCTTTTAATGAGCTTTTAGGATAACACTATGGATTGTCATTTATTTCAGATGTTTGATATTTTGTTACATTTAAACATTTTTATTAAAATATGGCGTTGGGGCGGGGTACAAAGTATGCCATATTAGCTGGCCGCCTAACCCCTAACCCGTCATTGAACATTAGTGGGGCCCTGAA
Unaligned ( gi|17 ): AGAAAAGCTTAGACAAAAAAGTATGAGATATATCAAAAAGAAACGAACCTCCACCGGACGTGGGGGAGACTGTGAAAAATTGTATTATCGCTGGTCGGGTTACGGGAGGTCGCCCCCGTAAATTTGTGATATTTGTACATTCTATTTAGTTTTAGGGGAAATGGTTGTTATTCAA
Unaligned ( gi|18 ): ATGGTAAAATATTGGAAGGGGGGTGCAAAGTATATACTAGGCTCCTCCAACCTGAAGAAGTGGGGGTGGGGTTGGGGGCGGACCCCATCCCTGGCTCCTACGCTTATGGTATATAC
Unaligned ( gi|20 ): TTAAAGGCAATTCAATACATAACATGCTATTATATAATAATATTTATCACAGCATATTCTTTTGATGTACTTTTGGTGTAGAAAAATCTCATTTATTAGATGCA
Unaligned ( gi|21 ): CAAAAATGCTGCAATCTAGCTATAGGCTAAAGTTAAGTTTTATTAATGTTTGGTATTTTGTGTTGTTTTTTTTTTTAAATGGGGGGTGGGGGTAATGTCTATA
Unaligned ( gi|22 ): TACACCGGCCTTCAACATGAACATTGATGGAGTTAGGTGAAGGCGCACCAACTGCTTCTGGTCCCACGCCTATGGTAATATAAGATGGACCACAGA
Unaligned ( gi|23 ): GCATTTTTATTAATCTATTAGGGACAAGGCAATATATATACTGGCCTACCCATCCTGAACATTAGAATAGGGGTGCCGGTCCCCGACTCT
Unaligned ( gi|24 ): TTGAGTAAAATACTGGGGTGTGGGGTGGGTCAAAATATATGCAGGCCCCTCCAACCTGAACAG
Unaligned ( gi|25 ): CCAGATGTTTGATACTTTGTCACTTTTAACATCTTTATTGAAATATTGTGT
Alignments
lowQualScore : 11111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 11 1 1 222222 11 5555555555555 1 3333333 33 111 222 2 22 4444 1 1 4 11 2 1 333333 1 11 3333333333333 44444 1 11 1 1 11 666666666666666666666666666666666666666666666666 2 2 1 2 44444 1
lowQualScore : 44444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444 88 22 7 22 0 1 2 6 5 3 888888 4 2 22 5555555555555 3 2 3 33 0 4444444 0 11 1 1 00 1 1 1 222 333 2 2 4 0 2 2 3 4 4 4 2 2 3 77 4 6 6 1 1 2 2222 2 6 4 1 7 7 0 88 2 0 5 000000 5 55 4 4 77 77 2 4 2 6 44 1 1 7 7 0 1 2222222222222 0 33333 0 1 1 1 6 0 7 4 0 0 1 3 0 33 66 3 1 3 2 3 44 3 2 22 2 2 44 8888888 1 11 0 000000000000000000000000000000000000000000000000 1 7 1 3 0 0 3 1 1 1 0 0 1 7 1 0 0 1 0 88 1 5 7 555555 0 1 0 1 0 1 1 7 0 0 1 3 1 1 0 1 55555 1 1 1 1 1 1 4
lowQualScore : ........................................................................................................ .. .. . .. . . . . . . ...... . . .. ............. . . . .. . ....... . .. . . .. . . . ... ... . . . . . . . . . . . . . .. . . . . . . .... . . . . . . . .. . . . ...... . .. . . .. .. . . . . .. . . . . . . ............. . ..... . . . . . . . . . . . . . .. .. . . . . . .. . . .. . . .. ....... . .. . ................................................ . . . . . . . . . . . . . . . . . . . .. . . . ...... . . . . . . . . . . . . . . . . ..... . . . . . . .
lowQualScore : 00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 00 00 3 00 7 0 0 7 0 2 000000 5 0 55 0000000000000 2 0 0 55 0 5555555 7 77 0 0 33 0 0 0 000 333 5 5 0 0 5 5 0 0 0 0 5 5 0 55 0 0 0 0 0 5 5555 5 0 0 0 0 0 0 00 5 0 0 000000 0 55 0 0 00 00 5 0 5 0 00 0 0 3 3 7 0 3333333333333 7 77777 7 0 0 0 7 7 3 0 7 7 0 2 0 88 00 0 0 3 0 0 00 3 0 77 0 0 33 7777777 0 77 7 333333333333333333333333333333333333333333333333 0 3 0 3 7 7 7 0 0 0 7 7 0 3 0 7 7 0 7 00 0 0 3 333333 7 0 7 0 7 0 0 3 7 7 0 3 0 0 7 0 00000 0 0 0 0 0 0 0
consensus : TTTAACATTTCACTACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGACACCAAAGTATGGGACGGAGAGAGAGAGAGAGGTTAAATATTATATTTGTTTCACTTAAATAGATTAGCTGAAATAATACAATATAGCCATATTTAGTTTCAGGCACATGTATATCGTAGACAGTACTATCGTTTCATGTAACTAATATTTTACTAACCCCTGTGTTTCCCCTCTACCTCTGTAAACT-CTTTTGTTATTTAAATTATGTAACGTGTGAATCGAT-------------TGGTCATTACACTTTATAACTGACCATCGCATATGACCATTGTAGTCATGANTTATNNATTGATAAAC-ATATAAATAAAC-A-TT-AAACAACTATACTGATTATA--ACAGGTAAGANTAACG-TAAGATCAAT---GNTATNTTTATCTTCATAATNTAGTTTNAACAATNGTTCAATATTNTTTGATAAGGGTGTANTTTNTGGATAATTGTATNAACGTATTCCATTTNANTACCGNCGGCCATGTTTTATTTNATATTTGATTATGTGATGACANTTTATCATGAATTGACCATNGTATATGACCATTGCAGNTATGAATTATACATTCATGAGCTTATTAATATAATATCAATAGANAACCCGGCAACACTCTTTTAACCGGCACACACGAAGCCGTGGCGGTGGGGATCGAACCTACCNNGGTCCNATGCTTTNGATACATTTGTACCACCATACCATGCGNNACACAATTNNGTTTCGTNAGTGAGTGTTTTATTTCNTATTTTNTAAAAAAGAA-TTGATTTCCTCCTTAAAATGAAATCGTTTGTAT-ATG-GCTATCGGATAC---ATCTATGTTTTGGCCCTGTTGTCTTGTATGTATTCGAGCATACGTTATCACAT-GG--ATCATTGACTTNTAGATATTTGTTAGTT-AACAATACCTCAGAATAATTGTTNATATNCATACNNAGTAAAA-TCGTTTACTGTTCGNGCCATACAGCATANTTTTGTGTTGATACGCCGTNAAACCCCACGTCNNTTCACTGGACGATTGGCACTGAT-AACATACCCGTATTCATTGATCAAACGAAACGTGTCAAGTTG-NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTAACGGTACATTATAATCACATAATTATTCTTNTTA-TGTTTTGAAACGTGTACTTACTTACGTTGCTCTATT-TCGCACCTGCGTTTAGTTTCTATCGCGCTTTTTCGTAAAGGGCATACGAACAATACAAATCCGAACGACATGGTCAGGGCGAGCTGTTGTCAAGATTTCGATATACATTATCAGTTGTC-GATTTTAAAGTTGCTTAGACATATATTAAATTTGCTGGATCTCTACGATTAGAATCGCAATGGTGCTGTCTGCTGCTCGGTTCATTGTGCATGTGATGAAGGGTGTGGCTGCGACTGGTACTGCTACTGCTGTTGCTGCTGCTGTCTCCATGCGGGACGTTTGATGGACGATTTTGGT-GTCTTGCGGACGTTGTGGTTTCCTGGTAACGCTCTGCAGAACTGCTCCTGAGGTA----AAAACATTTTCAAATCAATTTTACATCATTGTTATGATCAGTAAGCAAT-TTACATTACCCGGAGGCCAGGCCCGGTAAG
Reference ( family-220 ) : TTTAACATTTCACTACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGACACCAAAGTATGGGACGGAGAGAGAGAGAGAGGTTAAATATTATATTTGTTTCACTTAAATAGATTAGCTGAAATAATACAATATAGCCATATTTAGTTTCAGGCACATGTATATCGTAGACAGTACTANNGTTTCATGTAACNNACATTTTACTAACCCNTGTGTTTCCCCTCTACCTCTGTAAACCACTNNTGTTATTTANATTACGTAACGTGTGAATCGAT-------------TGGTCATTACACTTTATAACTGACCATCGCATATGACCATCGTAGTTATGAATTATNCATTGATAAAC-ATATAAATAAAC-A-TC-GAACAACTGTACTNGTNANAAGANAGGTAAGANTNACGATAAGATCAAT---GCTATCTTTATCTTCATAATATA-TTTCAACAATGATTCAATATTTTTTGATAAGGATGTATTTTATGGATAATTGTATTAACGTATTCCATTTGACTACCGTCGGCCATGTTTT--TTAATATTCGATTGTGTNATNACACTTTAT----AATTGACCATCGTATATGACCATCGTAGATATGAATTATNCATTCATAAACATATAAATA-AATATCAATAAACAACT-GGCAACACTCTTTTAATTAATACACACGAAGTCGTGACGGTGGGGATCGAACCTACCCTGGTTCAATGCTTTAGATATATTTATACCACCATACCATGCGTTACACAATTTAGTTTTGTGAGTGAGTGTTTTATTTCATATTTTGTAAAAGAGAACTTGATTTNCTCCTNAAAATGAAATCGTNTNTATTATGCGCTNTCGGATGNCATATCCATNTNTNGGCCCTGCTGTCTTGTATATATCCGAGCATACGNTATCACAT-GG--ATCATTGGCTTCTNGATATTTGTTAGTT-AACAATACCTCAGAATAATTATTCATATTCATACCGAGTAAAA-TCGTTTACTGTTCGGGTCATACAGCATAGTTTTGTATTAATACGCCGTCAAACCCCACATCCATTCACTGGACGATTGGCACTGATAAACATACCCGTATTCATNGATCAAACGGNACGTGTCAAGTTG-NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTAACGGTACATTATAATCNCATAATTATTCTTNTTACTGTTTTGAAACGTGTACTTGCTTACGTTGCTCTATTATCGCANCTGNGTTTAGTTTCTNTCGCGCCTTTTNGTAAAGGGCATACGAACAANACAAATCCGAACGACATGGCCAGGGCGAGCTGTTGTCAAGNTTTCGATACACACTATCAGTNGTCGGATTTTAAAGTTGCTTAGACATATNCCNNNTTTGCTGGATCTCTACGACTAGAATCGCNATGGTGCTGTCTGCTGCTCGGTTNATTGTGCATGTGGTGAAGGGTGTGGCTGCNANTGGTACTGCTACTGCTGTTGCTGCTGCTGTCTCCATGCGGGACGTTTGGTGGACGGTTTTNGTCGTCTTGCGGACGTTGTGGTNTCCTGNTAACGCCCNGCAGAACTGCTCCTGAGGTGAGTTAAAACATNTTCAAATCANTTTTNCATCANTGTTATNATCAGTNAGCAATNTTACATTACCCGGAGGCCAGGCCCGGTAAG
gi|1 : TTTAACATTTCACTACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGACACCAAAGTATGGGACGGAGAGAGAGAGAG--GTTAAATATTATATTTGTTTCACTTAAATAGATTAGCTGAAATAATACAATATAGCTATATTTAGTTTCAGGCATATGTATATCGTAGACAGTACTATCGTTTCATGTAACTAATATTTTACTAACCCCTGTGTTTTCCCTCTACCTCT-TAAACT-CTTTTGTTATTTAAATTATGTAACGTGTGAATCGAT-------------TGGTCATTACACTTTATAACTGACCATCGCATATGACCATTGTAGTCATGACTTATTAATTGATAAAC-ATATAAATAAAC-A-TTTAAACAACTATACTGATTATAC--CAGGTAAGAATAACGCTATGATCAATTATGATATATTTATCTTCATAATTTAGTTTAAATAATTGTTCAATATTGTTTGATAAGGGTGTAATTTTTGGATAATTGTATAAACATATTCCATTTTAGTACTGGCGGCCATGTTTTATTTTATATTTGATTATGTGATGACAGTTTATCATGAATTGACCATCGTATATGACCATTGTAGTTATGAATTATACATTCATAAACTTATTAATATAATATCAATAGAGAACCCAGTAA-AC------AACCGGCA-ACACGAAGCCGTGGCGGTGGAGATCGAACCTACCGGGGTCCTATGCTTTTAATACATTTGTACCATCATATCATGCAGAACACAATTACGTTTCGTTAGTGAGTGTTTTATTTCTTATTTTCTAAAAAAAA--TTGATTTCCTCCTTAAAATGAAATCATTTGTATAATG---TATTGGATAC----TCTATGTTTTGGCCCTGTTGTCTTGTATGTATTCAAGTATACGTTATCACAT-GG--ATCATTGACTTGTAGGTATTTGTTAGTTCAACAATACCTCAGAATAATTGTTGATATATATACATAGTAAAAATCGTTTACTGTTTACGCCATA--ACATATTTTTGTGTTGATACGCCGTAAAACCCCACGTCACTTCACTGGACGATTTGCACTGATTAACATACCCGTATCCATTGATCAAACGAAACANNNNNNNNNN-NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTAACGGTACATTATAATCACATAATTATTCTTGTTA-TGTTTTGGAACGTGTACTTACTTATGTTGCTCTATT-TCGCACCTGCGTTTAGTTTCTATCGCACTTTTTCGTAAAGGGCATACGAACAATACAAATCCGAACGACATGGTCAGGGTGAGCTGTTGTCAAGATTTCGATATACATTATCAGTTGTCTGATTTTAAAGTTGCTTAGACATTTATTAAATTTGCTGGATCTCTACGATTAGAATCGCAATGGTGCTGTCTGCTGCTCAGTTCATTGTGCATGTAATGAAAGGTGTGGCTACGACTGGTACTGCTACTGC---TGCTGCTGCTGTCTCCATGCGGGACGTTTGATGGACGATTTTGGT-GTCTTGCGGACGTTGTGGTTTCCTGGTAACGCTCTGCAGAACTGCTCCTGAGGTA----AAAACATTTTCAAATCAATTTAACATCATTGTTATGATCAGTAAGCAATTTTACATTACCCGGAGGCCAGGCCCGGTAAG
gi|16 : TCTGTAAACCACTAATGTTATTTACATTATGTA-CGTGTGAATCGATGAGTTCCGATTGATGGTCAATACACTC-ATGATTGACCATTGTATATATCTATCTTATATATGAATTACGCATTCATAAACAATGTAAATAAACTA-TC---ACACGTGTACTTGTAATAAGAGAGGTAAGACTAA----AAGATAAAT---
gi|19 : tataAGAAATTGATTTGCTCTTTAAAA-GAAA-CGTGTG--------GCT-TCGGATGTCATATCCATCTATTGA-CCTACTGTCT------TATCCGAGCATATGCTA-CACAT-AG--AACATTGG-TTTTAGAT
gi|2 : aGTACTAAAGTT--ATGTAACGTACATTTTATTAACCCATGTGTTT-CCCTTTAC----GTA----------------------ACGT-----GTGAATCGAT-------------TGGTCATTACACTTTAAAACTGACCATCGCATATGACCATTGCAGTTATGAATTATACATTGATAGAC-ATATAATTAAAC-A-TTGGAACAACTATACTGATTAAA--ACAGGTAAGAGTCACGATAAGATCAAT---GCTATCTTTATCTTCATAATATA-TTTCAACAATGATTCAATATTTTTTGATAAGGATGTATTTTATGGATAATTGTATTAACGTATTCCATTTGACTACCGTCGGCCATGTTTT--TTAATATTTGATTATATGATGACACTTTAT----AATTGACCATGGTATATGACCATTGCAGATATGAATTATACATTCATGAGCTTATTAATATAATA--AATAAACAACT-GGCAACACTCTTTTAATTAATACACACGAAGTCGTGACGGTGGGGATCGAACCTACCCTGGTTCAATGCTTTAGATATATTTATACCACCATACCATGCGTTACACAATTTAGTTTTGTGAGTGAGTGTTTTATTTCATATTTTGTAAAAAAGAACTTGATTTCCTTCTAAAAATGAAATCATTTCTATTATGTGCTATTGGATA----ATTTATGTTTGAGCCCTGTTGTCTTGTATATATTCAAGCATACGATATCACATCGGTTATAATTGACTTCTTGATATTTGTTAGTT-AACAATACCTCAGAATAATTATTCATATTCATACCGAGTAAAA-TCGTTTACTGTTCGGGTCATACAGCATAGTTTTGTATTAATACGCCGTCAAACCCCACATCCATTCACTGGATGATTGGC--------ACATACCCATATTCATAGATCAAACGGTACGTGTCAAGTTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAATCCC---ATTATTCTTATTACTGTTTTGAAACGTGTATTTGTTTACGTTGCTCTATTATCACAACTGAGTTTAATTTCTCTCGCGCCTTTTTGTAA---GCATACGAACAAAACAAATCCAAACGATATGGCCAGAGCGAGCTGTTGTCAAGTTTTCGATACACAC-----GTAATC--ATT---AAGTTGCTTAGACATATTTCACTTTTGCTAGATCTCTACGACTAGAATCACCATGGTGCTGTCTGTTGTTCGGTTAATTGTGCATGTGGTGAAGGGTGTGGCTGCTAATGGTACTGCTACTGCTGTTGCTGCTGCTGTCTCCATGTGGGACGTTTGGTGGATGGTTTTCGTCGTCTTGTGGACGTTGTGGTGTCCTGTTAACGCCCAGCAGAACTGCTCCTGAGGTGAGTTAAAACATGTTCAAATCATTTTTATATCAGTATTATTATCAGTTAGCAATATTACATTACTCG
gi|3 : TACGTTATCACAT-GG--ATCNNNNNNNNNNNNNNNNNNNNNNNNN-NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGACGATTGGCACTGATAAACATACCCGTATTCATTGATCAAACGAAACANNNNNNNNNN-NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTAACGGTACATTATAATCACATAATTATTCTTTTTA-TGTTTTGAAACGTGTACTTACTTATGTTGCTCTATT-TCGCACCTGCGTTTAGTTTCTATCGCATTTTTTGGTAAAGGGCATACGAACAATACAAATCCGAACGACATGGTCAGGGTGAGCTGTTGTCAAGATTTCGATATACATTATCAGTTGTCGGATTTTAAAGTTGCTTAGACATATACTTAATTTGCTGGATCTCTACGATTAGAATCGCAATGGTGCTGTCTGCTGCTCAGTTCATTGTGCATGTGATGAAGGGTGTGGCTGCGACTGGTACTGCTACTGCTGTTGCTGCTGCTGTCTCCATGCGGGACGTTTGATGGACGATTTTGGT-GTCTTGCGGACGTTGTGGTTTCCTGGTAACGCTCTGCAGAACTGCTCTTGAGGTA----AAAACATTTTCAAATCAATTTTTCATCATTGTTATGATCAGTAAGCAAT-TTACATTACCCGGAGGCCAGGCCCGGTAAG
gi|7 : TTTAACATTTCACTACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGACACCAAAGTATGGGACGGAGAGAGAGAGAGAGGTTAAATATTATATTTGTTTCACTTAAATAGATTAGCTGAAATAATACAATATAGCCATATTTAGTTTCAGGCACATGTATATCGTAGACAGTACTATCGTTTCATGTAACTAATATTTTACTAACCCCTGTGTTTCCCCTCTACCTCT-TAAACT-CTTTTGTTATTTAAATTATGTAACGTGTGAATCGAT-------------TGGTCATTACACTTTATAACTGACCATCGCATATGACCATTGTAGTCATGACTTATTAATTGATAAAC-ATATAAATAAAC-ATTT-AAACAACnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnattagtagttggatgggtgggtggactgaagggcgattgtgctcttgttgaacgggcggacggatgtaattccatgtgaacggtggtacaggcgagtgggcggacgcacggacagaatatacattttcaagtgcatgtttgtaatggcattaggcattttatttgacctgtatttataggcgtagcatagtttcagttaatgtgggagaggcaacctggggagtgggagattatgagggacatctctttcgccagttggcctctccagaaaatgtcgatactttgaacaccaaaggctgcgtcttagtaagtgtttatgataaattatgatttatatttctccgcaatatttttttagttataaacgtttt
19 sequences could not be aligned to this reference sequence:
Unaligned ( gi|4 ): CTTTAGAAATTCCATTTGAACGTAGTGAATTATAGGCGTAGGATCGTTTCTGTAAATGGAAGATGGGTAACCTAGGGAGTGAGATGCTGCACATTTAAGTGAGTGTTAAGGATAAATTATGATTGATATTTACTCCAAAGTATTTTGTGAGTTTAAAACATTTTTTGTGTAAAACAAACGGTAATATGTATTAAAAAATAACATTCACCTAGTATTTAAACCGGTTCGTCAGCACATCATGCACTGGGAGCCTAGGCATAATGATGAAAGAGTGTGGGAGAGTAACATGTTAATAATATACGTTTTTATTTAACACACGTACGCAAGTATCGCACGCACACATGCACAGGCGTTCCATACCCGAAAAAAATACACACACAAAACTGAACAAAATATGCAGGAAACCAGGGCACATGGGAAAATGCGACAACCTCTCGCACTGATTTGGGTATGGGATGCCTCGCTCAGAATGTGTTATATATTCTTAACCTATTGCTAGATACAAATAAGATATTAGGATGAGAAAACGGCTGTTACTTAAATAATTTAATATATTGTGACTTTAAAAGTATTAAATAAACAGACTGTCACGTAAAAACTTAGAAAAAGTTATATGATGTAACAAAGAAACCCCACCCCCTGATTTTATACTCAAGTCATGGAAGATGGTTTCATGCTGGCGGGGACACGGGAGATCTCCTCCGAAATTTTTATGACTAAAAAATAAATGTTCATTTTATTTAGTTTTAGAGAAAATAGATGTTAATATTTATTCTATTTTGTTATTTTTAAATGCTTACAAATTAACATACAATACTCTTAGAAAATATACAATCAGATGTATTTTAAAGATAAACCGAGTTTCAAACCCGATACCTCTTCCATTACAAGACAAAACGTGAAGGATAGTGTTGGACGAGGCTGGTGGCGATATTGGGGACTCCCTCGGATTTTTTTTTGTATTTAAACACCAAAGGCCTGACTGAGTGAGAATTTAAGACAAATATATGGATGGTGAATCAGGAATTTGGTATTATGTGACGATAAACATTGCTATTAAAATATTGGGGGAGGGCAAAGTATATGCATGCTGGCCCCCAACATGAACATTGATGGGGTTGGGTAGAGGCACTCCGACTGCTCCCGGCTCCTACACCTATAGTAATAAAAAAACGGATCACAC
Unaligned ( gi|5 ): TTTAAAAATGAGCGTCCAATGGGTTTTAAACAACATGCATGACAACATGACAAAACAAAACGTGAGGAAGAATATGAAGAGGGCTGGTGGCAGCACTGGATATTAACCTGAAAAAATATGATATTTAAAATAACAAATCCAGCATTCTAGTGAGTTTTGAGGGGTAAAAAATATGTTGTCATTTACTCCATATGTTTGATATCGTGTGACCTTTAGACATACAAAATATTGGGGTGGGGGACAAAGTTTATGCAGGACCCCCAACCCGAAATGGGAGGGAGTTCCTCTGGCCTCCGGCTCCTACGCCTTTGTTACTCCAGTGCGGGAGAGGATGTCCCTTTGCTGGTTGGGGTATGGGCGGCCTCGTATGGAAAATCTTTATATATTAAAAATTAAATACTGCATGTAGGTAACAATAAGGTGGAAAAAGTTGTTGTTTACTCCAATATTTTTTGTGACAATTAAACGGTTTATTAAGAAAAAATATGTATTAAAAATGAGCGTCCACTGGATTTAAACCTCATGTATGACAACTGTGAGAAAGAATACGAAGAGGGCTTGCGATGGTACGGGGTCTTAACCTGGAAAATTTAGATATATTAAAACAAAAAATGCTGCATTTGTGGGGGGGGGGGGATAAAATATGCTCTATTATTACCCCAAAATTTTGGTATTTTGTGACCTTTAAACATTTTTTATCAAAGTATTGGGCGAGGGTGCATAGTATAAGCTGGCCAACCTGAGTACTGTAGACGGGGACGGCTCCCATTGCCTCGTCCAGGTCGGCTCCTACGCCT
Unaligned ( gi|6 ): ATACCCAATAGGAACGATATTCGTTGCCCTTAGGGGATTCTCTGCTTATAGGGGTATGGGGACTTCTCTCCGAAAGTTTGGATATCTTAATAAGCAAATACTGCATTCAAGTTAGTTTAAAGGGGAAACGATTCTTAATTACATCAATGTTGGAGGGGGTGTCCCCTGCCGGTGGGGCTACTGGCCTATCCAGGAAAAAATAGATCAAATACAAAAAATATATAAGTTGTATTAAGATATGAGCATCCAAAATGTTTAAATCACTTGCATGACAAAACCTTAGGAAGTGAGGAAGAGTGTGAATAGTACTCGTGGCGATACGGGGTTTTAAACCAGACTTTTTTATATTTAGAACAACAAATGTTGCATTCTAGTGATTGTTTAGCTTAAAAATATGTTGTCATTTACTCCAGATGTTTGGTTTTGGTTTTTGTGACACTTAGGCATTTTTATCAAAATATTAGGGGGATTGGGATGGGCAAAGTATAAACTGGCCCCAAACCTGAACATTGGTGGAGCGGCCCCTTCTGGTCCCCGTGGCTCCTACGCA
Unaligned ( gi|8 ): TATATATATATTGTCAGAAATGACACTATCAAGCTCATGTTAGAAATTGCATTAGAAATTTCATTTCAAATGTATTACATGTATTATAGGCGTATTATCGTTTCAATAATTGGAGGTGGGCAACCACGGGAGCGGGAGGTTGTGAGGGACACCTCCCCTCCGGTTGGTTGTAATACAAAGGCTTCCCTAAGAATATTTCGATATCTTAAACATTAAAAGCTGTGTTTTAATGAGTATTTAGTGAGTTTATTTACTTCCCAATAGTTTATATAGTGAATTTTAAACGTTTTATGAAGTAAAAACGATAATATGTATAAAAAAACGATCTTTAACCGGACTTAAATAACGGTACCTCAAGCACTGGAGCCACAAATGGTAAGATAGGGTTGATGGGGAAAATTTATTACGAAACATTTCAGTA
Unaligned ( gi|9 ): ATATAATATAAATGACATTTCGATTACAAAGTGAATTGTACAAATTCCGACAAACGGAGTATGTTTTGTTCACGGCCGTAGATGAGTTTCAATTATTGAGGAGGGGAGGGCATTTTGGTGTATCCCCTCCCGTTGTTGATGGGGGATATCCTTGAACATTTTGATATATTCAACACCAAATGCTGCATAATAGGAAGATGTTATGAATAATTTTAGGAGTTTTATTTACTCATGGGACCAATATTGTGTGACTTAAATGTTTTATTAAGT
Unaligned ( gi|10 ): ACGGTGAGGCAAAAGGTTAGGAAAAGCGTGTAGGTATGCTGGTAGCATGTGGTGACCTCCTTAGGAAATTGTGATATTTAAAATACCAAATGCTGCATTCTAATGAGCTGTAAGGATAAAATAATATGCTTGTCATTTATTCCAGATGATTGTTTTTTTTTTTCACTTTTAATTATTGTTATTAAGATAAGGGATATATATGCTGCCCCTCCTTAACATTAGAAGGGGGGCCAACCCAACTGCTACCTCCCCTGGCTCCTATGCTT
Unaligned ( gi|11 ): TTTCCTCAGAAAGAATACAAGACTTTATTTAAAAAAGACGAAGGTCCCCGGGATTTAAAACACGCACGCAAGTTGCGATCCAAAACGTGACGGAGAGTGTAGAAGGCTGGCGATAGTGGGGCGCCCCCTGAAATATTTGATGTTTGGAACACCAAATTTTGCATTCTAGTGATTTGTTTAGTGATTATCGTTTACTTCAGATGTTTTATATTTTGCGACGTTTTTTTTTTTATATAAAACTATCTGGGTGG
Unaligned ( gi|12 ): GAGTGTATGAGGAGAGAGTGTATGAGGAGAGAATGTTGGATCGAGCTAATGGCGGCACACAACCAAGCGGAATTTTTTTATATTTAAAACAACAAATGCTGCATTATAGTGAGTTGTTAGGGTAAAGAATGAGGTGTTGTCATTAAGGTGTTTGGTATATTGTGACTTTAAAACATTTTTATCAAAATATTGGGGTGGGGTGGCAACTTGAACATTGGTGGGAGGGGATAGGGCGC
Unaligned ( gi|13 ): AATATTGGGGGTAGGAGCAACGTGTATGCTCCCCCATCTTAACATTGAAGTGGTTGGGTGGATCCCCAACCACACACGAGTTTTTCGCTTACGGTAATAAATATTGATCACAGAGGTTTTCATAAATTGGAATGAAGGCCAATGTAATGCATAACAGGTCATATTTGACAACCTGTACTTTTGGTGTAAAACAACTCACTAGTCATATGCATGAGCAACTGCGTAGAACT
Unaligned ( gi|14 ): GTTTTAAACCACATGAATGACAAGCCAAAATGTAAGGAAGAGTGTGAAGGGGTGGGATCCGATACGGGGTGTTAACCTGGACTTTTTTATATTTAAAACAAAAAATGCTGCATTCTAGTGATTTTAGGGTAAAAATATGTTGTCATTTACTCCAGATGTTTGGTATTTTGTGACCTTTTTACATTTTTATAAAAAAAATGGGGGGGGGGGGCAAAGTATTTGC
Unaligned ( gi|15 ): TATTTAGAAACAATAAATGTTGCTTTTAATGAGCTTTTAGGATAACACTATGGATTGTCATTTATTTCAGATGTTTGATATTTTGTTACATTTAAACATTTTTATTAAAATATGGCGTTGGGGCGGGGTACAAAGTATGCCATATTAGCTGGCCGCCTAACCCCTAACCCGTCATTGAACATTAGTGGGGCCCTGAA
Unaligned ( gi|17 ): AGAAAAGCTTAGACAAAAAAGTATGAGATATATCAAAAAGAAACGAACCTCCACCGGACGTGGGGGAGACTGTGAAAAATTGTATTATCGCTGGTCGGGTTACGGGAGGTCGCCCCCGTAAATTTGTGATATTTGTACATTCTATTTAGTTTTAGGGGAAATGGTTGTTATTCAA
Unaligned ( gi|18 ): ATGGTAAAATATTGGAAGGGGGGTGCAAAGTATATACTAGGCTCCTCCAACCTGAAGAAGTGGGGGTGGGGTTGGGGGCGGACCCCATCCCTGGCTCCTACGCTTATGGTATATAC
Unaligned ( gi|20 ): TTAAAGGCAATTCAATACATAACATGCTATTATATAATAATATTTATCACAGCATATTCTTTTGATGTACTTTTGGTGTAGAAAAATCTCATTTATTAGATGCA
Unaligned ( gi|21 ): CAAAAATGCTGCAATCTAGCTATAGGCTAAAGTTAAGTTTTATTAATGTTTGGTATTTTGTGTTGTTTTTTTTTTTAAATGGGGGGTGGGGGTAATGTCTATA
Unaligned ( gi|22 ): TACACCGGCCTTCAACATGAACATTGATGGAGTTAGGTGAAGGCGCACCAACTGCTTCTGGTCCCACGCCTATGGTAATATAAGATGGACCACAGA
Unaligned ( gi|23 ): GCATTTTTATTAATCTATTAGGGACAAGGCAATATATATACTGGCCTACCCATCCTGAACATTAGAATAGGGGTGCCGGTCCCCGACTCT
Unaligned ( gi|24 ): TTGAGTAAAATACTGGGGTGTGGGGTGGGTCAAAATATATGCAGGCCCCTCCAACCTGAACAG
Unaligned ( gi|25 ): CCAGATGTTTGATACTTTGTCACTTTTAACATCTTTATTGAAATATTGTGT
Alignments
lowQualScore : 11111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 11 2 1 5555555555555 1 111 111 11 333 222 1 1 11 4444444 11 33333 44444 11 1 1 333333 1 1 1 222222222222222 333333 1 11 1 1 11 1111111111 666666666666666666666666666666666666666666666666 1 1 333 1 2222 111
lowQualScore : 44444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444 88 3 3 3 5555555555555 3 1 22 0 111 444 3 88 1 111 333 1 1 1 5 1 1 1 1 1 4 7 1 1 22 3333333 11 1 33333 7 1 00000 1 1 0 0 7 7 88 1 5 5 000000 5 22 1 1 22 22 1 1 1 2 3 7 7 555555555555555 7 0 333333 6 7 3 0 1 3 0 33 5 1 3 1 1 22 3 1 22 1 1 22 7777777777 0 000000000000000000000000000000000000000000000000 7 1 3 0 3 0 3 7 0 7 333 7 0 7 3 8888 777
lowQualScore : ........................................................................................................ .. . . . ............. . . .. . ... ... . .. . ... ... . . . . . . . . . . . . . .. ....... .. . ..... . . ..... . . . . . . .. . . . ...... . .. . . .. .. . . . . . . . ............... . . ...... . . . . . . . .. . . . . . .. . . .. . . .. .......... . ................................................ . . . . . . . . . . ... . . . . .... ...
lowQualScore : 00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 00 3 3 2 0000000000000 2 0 00 0 000 888 2 33 0 777 333 0 0 0 0 0 0 0 0 0 0 3 0 0 33 3333333 33 0 33333 3 0 00000 0 0 7 7 3 3 00 0 0 0 000000 0 00 0 0 00 00 0 0 0 0 3 3 3 333333333333333 3 7 777777 7 3 7 7 2 2 0 88 2 0 3 0 0 00 3 0 77 0 0 00 7777777777 7 333333333333333333333333333333333333333333333333 3 0 3 7 3 7 7 3 7 3 333 3 7 3 3 3333 777
consensus : TTTAACATTTCACTACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGACACCAAAGTATGGGACGGAGAGAGAGAGAGAGGTTAAATATTATATTTGTTTCACTTAAATAGATTAGCTGAAATAATACAATATAGCCATATTTAGTTTCAGGCACATGTATATCGTAGACAGTACTATCGTTTCATGTAACTAATATTTTACTAACCCCTGTGTTTCCCCTCTACCTCT-TAAACT-CTTTTGTTATTTAAATTATGTAACGTGTGAATCGAT-------------TGGTCATTACACTTTATAACTGACCATCGCATATGACCATTGTAGTCATGANTTATNNATTGATAAAC-ATATAAATAAAC-A-TT-A-AACAACTATACTGATTATA--ACAGGTAAGANTAACG-TAAGATCAAT---GNTATNTTTATCTTCATAATNTAGTTTNAACAATNGTTCAATATTNTTTGATAAGGGTGTANTTTNTGGATAATTGTAT-AACGTATTCCATTTTANTACCG-CGGCCATGT-------TTTACTTAATAT-----TCGATTATGTGATGACACTTTAT---GAATTGACCATCGTATATGACCATTGCAGTTATGAATTATACATTCATAAACTTATTAATATAATATCAATAGANAACCCGGCAACACTCTTTTAACCGGCACACACGAAGCCGTGGCGGTGGGGATCGAACCTACCNNGGTCCNATGCTTTNGATACATTTGTACCACCATACCATGCGNNACACAATTNNGTTTCGTNAGTGAGTGTTTTATTTCNTATTTTNTAAAAAAGAA-TTGATTTCCTCCTTAAAATGAAATCGTTT-TAT-A-TG-GCTATCGGAT---ACATCTATGTTTTGGCCCTGTTGTCTTGTATGTATTCGAGCATACGTTATCACAT-GG--ATCATTGACTTNTAGATATTTGTTAGTT-AACAATACCTCAGAATAATTGTTNATATNCATACNNAGTAAAA-TCGTTTACTGTTCGNGCCATACAGCATANTTTTGTGTTGATACGCCGTNAAACCCCACGTCNNTTCACTGGACGATTGGCACTGAT-AA-CATACCCGTATTCATTGATCAAACGAAACGTGTCAAGTTG-NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTAACGGTACATTATAATCACATAATTATTCTTNTTA-TGTTTTGAAACGTGTACTTACTTACGTTGCTCTATT-TCGCACCTGCGTTTAGTTTCTATCGCGCTTTTTCGTAAAGGGCATACGAACAATACAAATCCGAACGACATGGTCAGGGCGAGCTGTTGTCAAGATTTCGATATACATTATCAGTTGTC-G-ATTTTAAAGTTGCTTAGACATATATTAAATTTGCTGGATCTCTACGATTAGAATCGCAATGGTGCTGTCTGCTGCTCGGTTCATTGTGCATGTGATGAAGGGTGTGGCTGCGACTGGTACTGCTACTGCTGTTGCTGCTGCTGTCTCCATGCGGGACGTTTGATGGACGATTTTGGT-GTCTTGCGGACGTTGTGGTTTCCTGGTAACGCTCTGCAGAACTGCTCCTGAGGTA----AAAACATTTTCAAATCAATTTTACATCATTGTTATGATCAGTAAGCAA-T-TTACATTACCCGGAGGCCAGGCCCGGTAAG
Reference ( family-220 ) : TTTAACATTTCACTACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGACACCAAAGTATGGGACGGAGAGAGAGAGAGAGGTTAAATATTATATTTGTTTCACTTAAATAGATTAGCTGAAATAATACAATATAGCCATATTTAGTTTCAGGCACATGTATATCGTAGACAGTACTATCGTTTCATGTAACTAATATTTTACTAACCCCTGTGTTTCCCCTCTACCTCTGTAAACT-CTTTTGTTATTTAAATTATGTAACGTGTGAATCGAT-------------TGGTCATTACACTTTATAACTGACCATCGCATATGACCATTGTAGTCATGANTTATNNATTGATAAAC-ATATAAATAAAC-A-TT-A-AACAACTATACTGATTATA--ACAGGTAAGANTAACG-TAAGATCAAT---GNTATNTTTATCTTCATAATNTAGTTTNAACAATNGTTCAATATTNTTTGATAAGGGTGTANTTTNTGGATAATTGTATNAACGTATTCCATTTNANTACCGNCGGCCATGT-------TTTATTTNATAT-----TTGATTATGTGATGACANTTTATCATGAATTGACCATNGTATATGACCATTGCAGNTATGAATTATACATTCATGAGCTTATTAATATAATATCAATAGANAACCCGGCAACACTCTTTTAACCGGCACACACGAAGCCGTGGCGGTGGGGATCGAACCTACCNNGGTCCNATGCTTTNGATACATTTGTACCACCATACCATGCGNNACACAATTNNGTTTCGTNAGTGAGTGTTTTATTTCNTATTTTNTAAAAAAGAA-TTGATTTCCTCCTTAAAATGAAATCGTTTGTAT-A-TG-GCTATCGGAT---ACATCTATGTTTTGGCCCTGTTGTCTTGTATGTATTCGAGCATACGTTATCACAT-GG--ATCATTGACTTNTAGATATTTGTTAGTT-AACAATACCTCAGAATAATTGTTNATATNCATACNNAGTAAAA-TCGTTTACTGTTCGNGCCATACAGCATANTTTTGTGTTGATACGCCGTNAAACCCCACGTCNNTTCACTGGACGATTGGCACTGAT-AA-CATACCCGTATTCATTGATCAAACGAAACGTGTCAAGTTG-NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTAACGGTACATTATAATCACATAATTATTCTTNTTA-TGTTTTGAAACGTGTACTTACTTACGTTGCTCTATT-TCGCACCTGCGTTTAGTTTCTATCGCGCTTTTTCGTAAAGGGCATACGAACAATACAAATCCGAACGACATGGTCAGGGCGAGCTGTTGTCAAGATTTCGATATACATTATCAGTTGTC-G-ATTTTAAAGTTGCTTAGACATATATTAAATTTGCTGGATCTCTACGATTAGAATCGCAATGGTGCTGTCTGCTGCTCGGTTCATTGTGCATGTGATGAAGGGTGTGGCTGCGACTGGTACTGCTACTGCTGTTGCTGCTGCTGTCTCCATGCGGGACGTTTGATGGACGATTTTGGT-GTCTTGCGGACGTTGTGGTTTCCTGGTAACGCTCTGCAGAACTGCTCCTGAGGTA----AAAACATTTTCAAATCAATTTTACATCATTGTTATGATCAGTAAGCAA-T-TTACATTACCCGGAGGCCAGGCCCGGTAAG
gi|1 : TTTAACATTTCACTACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGACACCAAAGTATGGGACGGAGAGAGAGAGAG--GTTAAATATTATATTTGTTTCACTTAAATAGATTAGCTGAAATAATACAATATAGCTATATTTAGTTTCAGGCATATGTATATCGTAGACAGTACTATCGTTTCATGTAACTAATATTTTACTAACCCCTGTGTTTTCCCTCTACCTCT-TAAACT-CTTTTGTTATTTAAATTATGTAACGTGTGAATCGAT-------------TGGTCATTACACTTTATAACTGACCATCGCATATGACCATTGTAGTCATGACTTATTAATTGATAAAC-ATATAAATAAAC-A-TTTA-AACAACTATACTGATTATA--CCAGGTAAGAATAACGCTATGATCAATTATGATATATTTATCTTCATAATTTAGTTTAAATAATTGTTCAATATTGTTTGATAAGGGTGTAATTTTTGGATAATTGTATAAACATATTCCATTTTAGTACTGGCGGCCATGT-------TTTATTTTATAT-----TTGATTATGTGATGACAGTTTATCATGAATTGACCATCGTATATGACCATTGTAGTTATGAATTATACATTCATAAACTTATTAATATAATATCAATAGAGAACCCAGTAA-AC------AACCGGCA-ACACGAAGCCGTGGCGGTGGAGATCGAACCTACCGGGGTCCTATGCTTTTAATACATTTGTACCATCATATCATGCAGAACACAATTACGTTTCGTTAGTGAGTGTTTTATTTCTTATTTTCTAAAAAA-AA-TTGATTTCCTCCTTAAAATGAAATCATTTGTAT-AATG---TATTGGAT---AC-TCTATGTTTTGGCCCTGTTGTCTTGTATGTATTCAAGTATACGTTATCACAT-GG--ATCATTGACTTGTAGGTATTTGTTAGTTCAACAATACCTCAGAATAATTGTTGATATATATACATAGTAAAAATCGTTTACTGTTTACGCCATA--ACATATTTTTGTGTTGATACGCCGTAAAACCCCACGTCACTTCACTGGACGATTTGCACTGATTAA-CATACCCGTATCCATTGATCAAACGAAACANNNNNNNNNN-NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTAACGGTACATTATAATCACATAATTATTCTTGTTA-TGTTTTGGAACGTGTACTTACTTATGTTGCTCTATT-TCGCACCTGCGTTTAGTTTCTATCGCACTTTTTCGTAAAGGGCATACGAACAATACAAATCCGAACGACATGGTCAGGGTGAGCTGTTGTCAAGATTTCGATATACATTATCAGTTGTCTG-ATTTTAAAGTTGCTTAGACATTTATTAAATTTGCTGGATCTCTACGATTAGAATCGCAATGGTGCTGTCTGCTGCTCAGTTCATTGTGCATGTAATGAAAGGTGTGGCTACGACTGGTACTGCTACTGC---TGCTGCTGCTGTCTCCATGCGGGACGTTTGATGGACGATTTTGGT-GTCTTGCGGACGTTGTGGTTTCCTGGTAACGCTCTGCAGAACTGCTCCTGAGGTA----AAAACATTTTCAAATCAATTTAACATCATTGTTATGATCAGTAAGCAATT-TTACATTACCCGGAGGCCAGGCCCGGTAAG
gi|16 : TCTGTAAACCACTAATGTTATTTACATTATGTA-CGTGTGAATCGATGAGTTCCGATTGATGGTCAATACACTC-ATGATTGACCATTGTATATATCTATCTTATATATGAATTACGCATTCATAAACAATGTAAATAAACTA-TC-A-CACG--TGTACTTGTAATAAGAGAGGTAAGACTAA----AAGATAAAT---
gi|19 : tataAAGAAA-TTGATTTGCTCTTTAAAA-GAAA-CG------T-G-TG-GCT-TCGGATGTCATATCCATCTATTGA-CCTACTGTCT------TATCCGAGCATATGCTA-CACAT-AG--AACATTGG-TTTTAGAT
gi|2 : AGTTATGT-AACGTA---CATTTTATTAAC-----CCATGTGTTTCCCTTTACGTAACGTGTGAATCGATTG-GTCATTACACTTTA----AAACTGACCATCGCATATGACCATTGCAGTTATGAATTATACATTGATAGACATA-TAAT-TAA
gi|2 : gtactaaTTACGTAACGTGTGAATCGAT-------------TGGTCATTACACTTTAAAACTGACCATCGCATATGACCATTGCAGTTATGAATTATACATTGATAGAC-ATATAATTAAAC-A-TT-GGAACAACTATACTGATTAAA--ACAGGTAAGAGTCACGATAAGATCAAT---GCTATCTTTATCTTCATAATATA-TTTCAACAATGATTCAATATTTTTTGATAAGGATGTATTTTATGGATAATTGTATTAACGTATTCCATTTGACTACCGTCGGCCATGT-------TTT--TTAATAT-----TTGATTATATGATGACACTTTAT----AATTGACCATGGTATATGACCATTGCAGATATGAATTATACATTCATGAGCTTATTAATATAATA--AATAAACAACT-GGCAACACTCTTTTAATTAATACACACGAAGTCGTGACGGTGGGGATCGAACCTACCCTGGTTCAATGCTTTAGATATATTTATACCACCATACCATGCGTTACACAATTTAGTTTTGTGAGTGAGTGTTTTATTTCATATTTTGTAAAAAAGAACTTGATTTCCTTCTAAAAATGAAATCATTTCTATTA-TGTGCTATTGGAT---A-ATTTATGTTTGAGCCCTGTTGTCTTGTATATATTCAAGCATACGATATCACATCGGTTATAATTGACTTCTTGATATTTGTTAGTT-AACAATACCTCAGAATAATTATTCATATTCATACCGAGTAAAA-TCGTTTACTGTTCGGGTCATACAGCATAGTTTTGTATTAATACGCCGTCAAACCCCACATCCATTCACTGGATGATTGGC--------A-CATACCCATATTCATAGATCAAACGGTACGTGTCAAGTTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAATCCC---ATTATTCTTATTACTGTTTTGAAACGTGTATTTGTTTACGTTGCTCTATTATCACAACTGAGTTTAATTTCTCTCGCGCCTTTTTGTAA---GCATACGAACAAAACAAATCCAAACGATATGGCCAGAGCGAGCTGTTGTCAAGTTTTCGATACACAC-----GTAATC---ATT---AAGTTGCTTAGACATATTTCACTTTTGCTAGATCTCTACGACTAGAATCACCATGGTGCTGTCTGTTGTTCGGTTAATTGTGCATGTGGTGAAGGGTGTGGCTGCTAATGGTACTGCTACTGCTGTTGCTGCTGCTGTCTCCATGTGGGACGTTTGGTGGATGGTTTTCGTCGTCTTGTGGACGTTGTGGTGTCCTGTTAACGCCCAGCAGAACTGCTCCTGAGGTGAGTTAAAACATGTTCAAATCATTTTTATATCAGTATTATTATCAGTTAGCAA-TATTACATTACTCGacattggaacaactatactgattaaaacaggtaagagtcacgataagatcaatgctatctttatcttcataatatatttcaacaatgattcaatattttttgataaggatgtattttatggataattgtattaacgtattccatttgactaccgtcggccatgttttttaatatttgattatatgatgacactttataattgaccatggtatatgaccattgcagatatgaattatacattcatgagcttattaatataataaataaacaactggcaacactcttttaattaatacacacgaagtcgtgacggtggggatcgaacctaccctggttcaatgctttagatatatttataccaccataccatgcgttacacaatttagttttgtgagtgagtgttttatttcatattttgtaaaaaagaacttgatttccttctaaaaatgaaatcatttctattatgtgctattggataatttatgtttgagccctgttgtcttgtatatattcaagcatacgatatcacatcggttataattgacttcttgatatttgttagttaacaatacctcagaataattattcatattcataccgagtaaaatcgtttactgttcgggtcatacagcatagttttgtattaatacgccgtcaaaccccacatccattcactggatgattggcacatacccatattcatagatcaaacggtacgtgtcaagttgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaatcccattattcttattactgttttgaaacgtgtatttgtttacgttgctctattatcacaactgagtttaatttctctcgcgcctttttgtaagcatacgaacaaaacaaatccaaacgatatggccagagcgagctgttgtcaagttttcgatacacacgtaatcattaagttgcttagacatatttcacttttgctagatctctacgactagaatcaccatggtgctgtctgttgttcggttaattgtgcatgtggtgaagggtgtggctgctaatggtactgctactgctgttgctgctgctgtctccatgtgggacgtttggtggatggttttcgtcgtcttgtggacgttgtggtgtcctgttaacgcccagcagaactgctcctgaggtgagttaaaacatgttcaaatcatttttatatcagtattattatcagttagcaatattacattactcg
gi|3 : gtactaaagttatgtaacgtacattttattaacccatgtgtttccctTACGTTATCACAT-GG--ATCNNNNNNNNNNNNNNNNNNNNNNNNN-NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGACGATTGGCACTGAT-AAACATACCCGTATTCATTGATCAAACGAAACANNNNNNNNNN-NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTAACGGTACATTATAATCACATAATTATTCTTTTTA-TGTTTTGAAACGTGTACTTACTTATGTTGCTCTATT-TCGCACCTGCGTTTAGTTTCTATCGCATTTTTTGGTAAAGGGCATACGAACAATACAAATCCGAACGACATGGTCAGGGTGAGCTGTTGTCAAGATTTCGATATACATTATCAGTTGTC-GGATTTTAAAGTTGCTTAGACATATACTTAATTTGCTGGATCTCTACGATTAGAATCGCAATGGTGCTGTCTGCTGCTCAGTTCATTGTGCATGTGATGAAGGGTGTGGCTGCGACTGGTACTGCTACTGCTGTTGCTGCTGCTGTCTCCATGCGGGACGTTTGATGGACGATTTTGGT-GTCTTGCGGACGTTGTGGTTTCCTGGTAACGCTCTGCAGAACTGCTCTTGAGGTA----AAAACATTTTCAAATCAATTTTTCATCATTGTTATGATCAGTAAGCAA-T-TTACATTACCCGGAGGCCAGGCCCGGTAAG
gi|7 : TTTAACATTTCACTACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGACACCAAAGTATGGGACGGAGAGAGAGAGAGAGGTTAAATATTATATTTGTTTCACTTAAATAGATTAGCTGAAATAATACAATATAGCCATATTTAGTTTCAGGCACATGTATATCGTAGACAGTACTATCGTTTCATGTAACTAATATTTTACTAACCCCTGTGTTTCCCCTCTACCTCT-TAAACT-CTTTTGTTATTTAAATTATGTAACGTGTGAATCGAT-------------TGGTCATTACACTTTATAACTGACCATCGCATATGACCATTGTAGTCATGACTTATTAATTGATAAAC-ATATAAATAAAC-ATTT-A-AACAACnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnattagtagttggatgggtgggtggactgaagggcgattgtgctcttgttgaacgggcggacggatgtaattccatgtgaacggtggtacaggcgagtgggcggacgcacggacagaatatacattttcaagtgcatgtttgtaatggcattaggcattttatttgacctgtatttataggcgtagcatagtttcagttaatgtgggagaggcaacctggggagtgggagattatgagggacatctctttcgccagttggcctctccagaaaatgtcgatactttgaacaccaaaggctgcgtcttagtaagtgtttatgataaattatgatttatatttctccgcaatatttttttagttataaacgtttt
19 sequences could not be aligned to this reference sequence:
Unaligned ( gi|4 ): CTTTAGAAATTCCATTTGAACGTAGTGAATTATAGGCGTAGGATCGTTTCTGTAAATGGAAGATGGGTAACCTAGGGAGTGAGATGCTGCACATTTAAGTGAGTGTTAAGGATAAATTATGATTGATATTTACTCCAAAGTATTTTGTGAGTTTAAAACATTTTTTGTGTAAAACAAACGGTAATATGTATTAAAAAATAACATTCACCTAGTATTTAAACCGGTTCGTCAGCACATCATGCACTGGGAGCCTAGGCATAATGATGAAAGAGTGTGGGAGAGTAACATGTTAATAATATACGTTTTTATTTAACACACGTACGCAAGTATCGCACGCACACATGCACAGGCGTTCCATACCCGAAAAAAATACACACACAAAACTGAACAAAATATGCAGGAAACCAGGGCACATGGGAAAATGCGACAACCTCTCGCACTGATTTGGGTATGGGATGCCTCGCTCAGAATGTGTTATATATTCTTAACCTATTGCTAGATACAAATAAGATATTAGGATGAGAAAACGGCTGTTACTTAAATAATTTAATATATTGTGACTTTAAAAGTATTAAATAAACAGACTGTCACGTAAAAACTTAGAAAAAGTTATATGATGTAACAAAGAAACCCCACCCCCTGATTTTATACTCAAGTCATGGAAGATGGTTTCATGCTGGCGGGGACACGGGAGATCTCCTCCGAAATTTTTATGACTAAAAAATAAATGTTCATTTTATTTAGTTTTAGAGAAAATAGATGTTAATATTTATTCTATTTTGTTATTTTTAAATGCTTACAAATTAACATACAATACTCTTAGAAAATATACAATCAGATGTATTTTAAAGATAAACCGAGTTTCAAACCCGATACCTCTTCCATTACAAGACAAAACGTGAAGGATAGTGTTGGACGAGGCTGGTGGCGATATTGGGGACTCCCTCGGATTTTTTTTTGTATTTAAACACCAAAGGCCTGACTGAGTGAGAATTTAAGACAAATATATGGATGGTGAATCAGGAATTTGGTATTATGTGACGATAAACATTGCTATTAAAATATTGGGGGAGGGCAAAGTATATGCATGCTGGCCCCCAACATGAACATTGATGGGGTTGGGTAGAGGCACTCCGACTGCTCCCGGCTCCTACACCTATAGTAATAAAAAAACGGATCACAC
Unaligned ( gi|5 ): TTTAAAAATGAGCGTCCAATGGGTTTTAAACAACATGCATGACAACATGACAAAACAAAACGTGAGGAAGAATATGAAGAGGGCTGGTGGCAGCACTGGATATTAACCTGAAAAAATATGATATTTAAAATAACAAATCCAGCATTCTAGTGAGTTTTGAGGGGTAAAAAATATGTTGTCATTTACTCCATATGTTTGATATCGTGTGACCTTTAGACATACAAAATATTGGGGTGGGGGACAAAGTTTATGCAGGACCCCCAACCCGAAATGGGAGGGAGTTCCTCTGGCCTCCGGCTCCTACGCCTTTGTTACTCCAGTGCGGGAGAGGATGTCCCTTTGCTGGTTGGGGTATGGGCGGCCTCGTATGGAAAATCTTTATATATTAAAAATTAAATACTGCATGTAGGTAACAATAAGGTGGAAAAAGTTGTTGTTTACTCCAATATTTTTTGTGACAATTAAACGGTTTATTAAGAAAAAATATGTATTAAAAATGAGCGTCCACTGGATTTAAACCTCATGTATGACAACTGTGAGAAAGAATACGAAGAGGGCTTGCGATGGTACGGGGTCTTAACCTGGAAAATTTAGATATATTAAAACAAAAAATGCTGCATTTGTGGGGGGGGGGGGATAAAATATGCTCTATTATTACCCCAAAATTTTGGTATTTTGTGACCTTTAAACATTTTTTATCAAAGTATTGGGCGAGGGTGCATAGTATAAGCTGGCCAACCTGAGTACTGTAGACGGGGACGGCTCCCATTGCCTCGTCCAGGTCGGCTCCTACGCCT
Unaligned ( gi|6 ): ATACCCAATAGGAACGATATTCGTTGCCCTTAGGGGATTCTCTGCTTATAGGGGTATGGGGACTTCTCTCCGAAAGTTTGGATATCTTAATAAGCAAATACTGCATTCAAGTTAGTTTAAAGGGGAAACGATTCTTAATTACATCAATGTTGGAGGGGGTGTCCCCTGCCGGTGGGGCTACTGGCCTATCCAGGAAAAAATAGATCAAATACAAAAAATATATAAGTTGTATTAAGATATGAGCATCCAAAATGTTTAAATCACTTGCATGACAAAACCTTAGGAAGTGAGGAAGAGTGTGAATAGTACTCGTGGCGATACGGGGTTTTAAACCAGACTTTTTTATATTTAGAACAACAAATGTTGCATTCTAGTGATTGTTTAGCTTAAAAATATGTTGTCATTTACTCCAGATGTTTGGTTTTGGTTTTTGTGACACTTAGGCATTTTTATCAAAATATTAGGGGGATTGGGATGGGCAAAGTATAAACTGGCCCCAAACCTGAACATTGGTGGAGCGGCCCCTTCTGGTCCCCGTGGCTCCTACGCA
Unaligned ( gi|8 ): TATATATATATTGTCAGAAATGACACTATCAAGCTCATGTTAGAAATTGCATTAGAAATTTCATTTCAAATGTATTACATGTATTATAGGCGTATTATCGTTTCAATAATTGGAGGTGGGCAACCACGGGAGCGGGAGGTTGTGAGGGACACCTCCCCTCCGGTTGGTTGTAATACAAAGGCTTCCCTAAGAATATTTCGATATCTTAAACATTAAAAGCTGTGTTTTAATGAGTATTTAGTGAGTTTATTTACTTCCCAATAGTTTATATAGTGAATTTTAAACGTTTTATGAAGTAAAAACGATAATATGTATAAAAAAACGATCTTTAACCGGACTTAAATAACGGTACCTCAAGCACTGGAGCCACAAATGGTAAGATAGGGTTGATGGGGAAAATTTATTACGAAACATTTCAGTA
Unaligned ( gi|9 ): ATATAATATAAATGACATTTCGATTACAAAGTGAATTGTACAAATTCCGACAAACGGAGTATGTTTTGTTCACGGCCGTAGATGAGTTTCAATTATTGAGGAGGGGAGGGCATTTTGGTGTATCCCCTCCCGTTGTTGATGGGGGATATCCTTGAACATTTTGATATATTCAACACCAAATGCTGCATAATAGGAAGATGTTATGAATAATTTTAGGAGTTTTATTTACTCATGGGACCAATATTGTGTGACTTAAATGTTTTATTAAGT
Unaligned ( gi|10 ): ACGGTGAGGCAAAAGGTTAGGAAAAGCGTGTAGGTATGCTGGTAGCATGTGGTGACCTCCTTAGGAAATTGTGATATTTAAAATACCAAATGCTGCATTCTAATGAGCTGTAAGGATAAAATAATATGCTTGTCATTTATTCCAGATGATTGTTTTTTTTTTTCACTTTTAATTATTGTTATTAAGATAAGGGATATATATGCTGCCCCTCCTTAACATTAGAAGGGGGGCCAACCCAACTGCTACCTCCCCTGGCTCCTATGCTT
Unaligned ( gi|11 ): TTTCCTCAGAAAGAATACAAGACTTTATTTAAAAAAGACGAAGGTCCCCGGGATTTAAAACACGCACGCAAGTTGCGATCCAAAACGTGACGGAGAGTGTAGAAGGCTGGCGATAGTGGGGCGCCCCCTGAAATATTTGATGTTTGGAACACCAAATTTTGCATTCTAGTGATTTGTTTAGTGATTATCGTTTACTTCAGATGTTTTATATTTTGCGACGTTTTTTTTTTTATATAAAACTATCTGGGTGG
Unaligned ( gi|12 ): GAGTGTATGAGGAGAGAGTGTATGAGGAGAGAATGTTGGATCGAGCTAATGGCGGCACACAACCAAGCGGAATTTTTTTATATTTAAAACAACAAATGCTGCATTATAGTGAGTTGTTAGGGTAAAGAATGAGGTGTTGTCATTAAGGTGTTTGGTATATTGTGACTTTAAAACATTTTTATCAAAATATTGGGGTGGGGTGGCAACTTGAACATTGGTGGGAGGGGATAGGGCGC
Unaligned ( gi|13 ): AATATTGGGGGTAGGAGCAACGTGTATGCTCCCCCATCTTAACATTGAAGTGGTTGGGTGGATCCCCAACCACACACGAGTTTTTCGCTTACGGTAATAAATATTGATCACAGAGGTTTTCATAAATTGGAATGAAGGCCAATGTAATGCATAACAGGTCATATTTGACAACCTGTACTTTTGGTGTAAAACAACTCACTAGTCATATGCATGAGCAACTGCGTAGAACT
Unaligned ( gi|14 ): GTTTTAAACCACATGAATGACAAGCCAAAATGTAAGGAAGAGTGTGAAGGGGTGGGATCCGATACGGGGTGTTAACCTGGACTTTTTTATATTTAAAACAAAAAATGCTGCATTCTAGTGATTTTAGGGTAAAAATATGTTGTCATTTACTCCAGATGTTTGGTATTTTGTGACCTTTTTACATTTTTATAAAAAAAATGGGGGGGGGGGGCAAAGTATTTGC
Unaligned ( gi|15 ): TATTTAGAAACAATAAATGTTGCTTTTAATGAGCTTTTAGGATAACACTATGGATTGTCATTTATTTCAGATGTTTGATATTTTGTTACATTTAAACATTTTTATTAAAATATGGCGTTGGGGCGGGGTACAAAGTATGCCATATTAGCTGGCCGCCTAACCCCTAACCCGTCATTGAACATTAGTGGGGCCCTGAA
Unaligned ( gi|17 ): AGAAAAGCTTAGACAAAAAAGTATGAGATATATCAAAAAGAAACGAACCTCCACCGGACGTGGGGGAGACTGTGAAAAATTGTATTATCGCTGGTCGGGTTACGGGAGGTCGCCCCCGTAAATTTGTGATATTTGTACATTCTATTTAGTTTTAGGGGAAATGGTTGTTATTCAA
Unaligned ( gi|18 ): ATGGTAAAATATTGGAAGGGGGGTGCAAAGTATATACTAGGCTCCTCCAACCTGAAGAAGTGGGGGTGGGGTTGGGGGCGGACCCCATCCCTGGCTCCTACGCTTATGGTATATAC
Unaligned ( gi|20 ): TTAAAGGCAATTCAATACATAACATGCTATTATATAATAATATTTATCACAGCATATTCTTTTGATGTACTTTTGGTGTAGAAAAATCTCATTTATTAGATGCA
Unaligned ( gi|21 ): CAAAAATGCTGCAATCTAGCTATAGGCTAAAGTTAAGTTTTATTAATGTTTGGTATTTTGTGTTGTTTTTTTTTTTAAATGGGGGGTGGGGGTAATGTCTATA
Unaligned ( gi|22 ): TACACCGGCCTTCAACATGAACATTGATGGAGTTAGGTGAAGGCGCACCAACTGCTTCTGGTCCCACGCCTATGGTAATATAAGATGGACCACAGA
Unaligned ( gi|23 ): GCATTTTTATTAATCTATTAGGGACAAGGCAATATATATACTGGCCTACCCATCCTGAACATTAGAATAGGGGTGCCGGTCCCCGACTCT
Unaligned ( gi|24 ): TTGAGTAAAATACTGGGGTGTGGGGTGGGTCAAAATATATGCAGGCCCCTCCAACCTGAACAG
Unaligned ( gi|25 ): CCAGATGTTTGATACTTTGTCACTTTTAACATCTTTATTGAAATATTGTGT
Alignments
lowQualScore : 11111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 7777 1 1 5555555555555 1 222 1 11 333 222 1 2 333 4444444 11 33333 333333 11 1 1 333333 1 1 1 444444444 22 333333 1 11 1 1 11 1111111111 666666666666666666666666666666666666666666666666 1 1 333 1 2222 111
lowQualScore : 44444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444 0000 3 3 3 5555555555555 3 1 22 0 111 0 3 88 1 111 333 1 1 1 5 1 1 1 1 1 6 7 1 333 3333333 11 33333 0 7 333333 7 7 88 1 5 5 000000 5 22 1 1 22 22 1 1 1 2 3 7 7 888888888 00 7 0 333333 6 7 3 0 1 3 0 33 5 1 3 1 1 22 3 1 22 1 1 22 7777777777 0 000000000000000000000000000000000000000000000000 7 1 3 0 3 0 3 7 0 7 333 7 0 7 3 8888 777
lowQualScore : ........................................................................................................ .... . . . ............. . . .. . ... . . .. . ... ... . . . . . . . . . . . . ... ....... .. ..... . . ...... . . .. . . . ...... . .. . . .. .. . . . . . . . ......... .. . . ...... . . . . . . . .. . . . . . .. . . .. . . .. .......... . ................................................ . . . . . . . . . . ... . . . . .... ...
lowQualScore : 00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 0000 3 3 2 0000000000000 2 0 00 0 000 0 2 33 0 777 333 0 0 0 0 0 0 0 0 0 7 3 0 333 3333333 00 33333 7 3 777777 3 3 00 0 0 0 000000 0 00 0 0 00 00 0 0 0 0 3 3 3 333333333 00 3 7 777777 7 3 7 7 2 2 0 88 2 0 3 0 0 00 3 0 77 0 0 00 7777777777 7 333333333333333333333333333333333333333333333333 3 0 3 7 3 7 7 3 7 3 333 3 7 3 3 3333 777
consensus : TTTAACATTTCACTACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGACACCAAAGTATGGGACGGAGAGA--GAGAGAGAGGTTAAATATTATATTTGTTTCACTTAAATAGATTAGCTGAAATAATACAATATAGCCATATTTAGTTTCAGGCACATGTATATCGTAGACAGTACTATCGTTTCATGTAACTAATATTTTACTAACCCCTGTGTTTCCCCTCTACCTCT-TAAACT-CTTTTGTTATTTAAATTATGTAACGTGTGAATCGAT-------------TGGTCATTACACTTTATAACTGACCATCGCATATGACCATTGTAGTCATGANTTATNNATTGATAAAC-ATATAAATAAAC-ATTTA-AACAACTATACTGATTATA--ACAGGTAAGANTAACG-TAAGATCA---ATGNTATNTTTATCTTCATAATNTAGTTTNAACAATNGTTCAATATTNTTTGATAAGGGTGTANTTTNTGGATAATTGTAT-AACGTATTCCATTTTANTACC-G-CGGCCATGT-------TTTACTTAATAT-----TCGATTATGTGATGACACTTT---ATGAATTGACCATCGTATATGACCATTGCAGTTATGAATTATACATTCATAAACTTATTAATATAATATCAATAGANAACCCGGCAACACTCTTTTAACCGGCACACACGAAGCCGTGGCGGTGGGGATCGAACCTACCNNGGTCCNATGCTTTNGATACATTTGTACCACCATACCATGCGNNACACAATTNNGTTTCGTNAGTGAGTGTTTTATTTCNTATTTTNTAAAAAAGAA-TTGATTTCCTCCTTAAAATGAAATCGTTT-TAT-ATG-GCTATCGGAT---ACATCTATGTTTTGGCCCTGTTGTCTTGTATGTATTCGAGCATACGTTATCACAT-GG--ATCATTGACTTNTAGATATTTGTTAGTT-AACAATACCTCAGAATAATTGTTNATATNCATACNNAGT-AAAATCGTTTACTGTTCGNGCCATACAGCATANTTTTGTGTTGATACGCCGTNAAACCCCACGTCNNTTCACTGGACGATTGGCACTGA-TAA-CATACCCGTATTCATTGATCAAACGAAACGTGTCAAGTTG-NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTAACGGTACATTATAATCACATAATTATTCTTNTTA-TGTTTTGAAACGTGTACTTACTTACGTTGCTCTATT-TCGCACCTGCGTTTAGTTTCTATCGCGCTTTTTCGTAAAGGGCATACGAACAATACAAATCCGAACGACATGGTCAGGGCGAGCTGTTGTCAAGATTTCGATATACATTATCAGTTGTC-G-ATTTTAAAGTTGCTTAGACATATATTAAATTTGCTGGATCTCTACGATTAGAATCGCAATGGTGCTGTCTGCTGCTCGGTTCATTGTGCATGTGATGAAGGGTGTGGCTGCGACTGGTACTGCTACTGCTGTTGCTGCTGCTGTCTCCATGCGGGACGTTTGATGGACGATTTTGGT-GTCTTGCGGACGTTGTGGTTTCCTGGTAACGCTCTGCAGAACTGCTCCTGAGGTA----AAAACATTTTCAAATCAATTTTACATCATTGTTATGATCAGTAAGCAA-T-TTACATTACCCGGAGGCCAGGCCCGGTAAG
Reference ( family-220 ) : TTTAACATTTCACTACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGACACCAAAGTATGGGACGGAGA--GAGAGAGAGAGGTTAAATATTATATTTGTTTCACTTAAATAGATTAGCTGAAATAATACAATATAGCCATATTTAGTTTCAGGCACATGTATATCGTAGACAGTACTATCGTTTCATGTAACTAATATTTTACTAACCCCTGTGTTTCCCCTCTACCTCT-TAAACT-CTTTTGTTATTTAAATTATGTAACGTGTGAATCGAT-------------TGGTCATTACACTTTATAACTGACCATCGCATATGACCATTGTAGTCATGANTTATNNATTGATAAAC-ATATAAATAAAC-A-TTA-AACAACTATACTGATTATA--ACAGGTAAGANTAACG-TAAGATCA---ATGNTATNTTTATCTTCATAATNTAGTTTNAACAATNGTTCAATATTNTTTGATAAGGGTGTANTTTNTGGATAATTGTAT-AACGTATTCCATTTTANTACC-G-CGGCCATGT-------TTTACTTAATAT-----TCGATTATGTGATGACACTTT---ATGAATTGACCATCGTATATGACCATTGCAGTTATGAATTATACATTCATAAACTTATTAATATAATATCAATAGANAACCCGGCAACACTCTTTTAACCGGCACACACGAAGCCGTGGCGGTGGGGATCGAACCTACCNNGGTCCNATGCTTTNGATACATTTGTACCACCATACCATGCGNNACACAATTNNGTTTCGTNAGTGAGTGTTTTATTTCNTATTTTNTAAAAAAGAA-TTGATTTCCTCCTTAAAATGAAATCGTTT-TAT-ATG-GCTATCGGAT---ACATCTATGTTTTGGCCCTGTTGTCTTGTATGTATTCGAGCATACGTTATCACAT-GG--ATCATTGACTTNTAGATATTTGTTAGTT-AACAATACCTCAGAATAATTGTTNATATNCATACNNAGT-AAAATCGTTTACTGTTCGNGCCATACAGCATANTTTTGTGTTGATACGCCGTNAAACCCCACGTCNNTTCACTGGACGATTGGCACTGA-TAA-CATACCCGTATTCATTGATCAAACGAAACGTGTCAAGTTG-NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTAACGGTACATTATAATCACATAATTATTCTTNTTA-TGTTTTGAAACGTGTACTTACTTACGTTGCTCTATT-TCGCACCTGCGTTTAGTTTCTATCGCGCTTTTTCGTAAAGGGCATACGAACAATACAAATCCGAACGACATGGTCAGGGCGAGCTGTTGTCAAGATTTCGATATACATTATCAGTTGTC-G-ATTTTAAAGTTGCTTAGACATATATTAAATTTGCTGGATCTCTACGATTAGAATCGCAATGGTGCTGTCTGCTGCTCGGTTCATTGTGCATGTGATGAAGGGTGTGGCTGCGACTGGTACTGCTACTGCTGTTGCTGCTGCTGTCTCCATGCGGGACGTTTGATGGACGATTTTGGT-GTCTTGCGGACGTTGTGGTTTCCTGGTAACGCTCTGCAGAACTGCTCCTGAGGTA----AAAACATTTTCAAATCAATTTTACATCATTGTTATGATCAGTAAGCAA-T-TTACATTACCCGGAGGCCAGGCCCGGTAAG
gi|1 : TTTAACATTTCACTACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGACACCAAAGTATGGGACGGAGA----GAGAGAGAGGTTAAATATTATATTTGTTTCACTTAAATAGATTAGCTGAAATAATACAATATAGCTATATTTAGTTTCAGGCATATGTATATCGTAGACAGTACTATCGTTTCATGTAACTAATATTTTACTAACCCCTGTGTTTTCCCTCTACCTCT-TAAACT-CTTTTGTTATTTAAATTATGTAACGTGTGAATCGAT-------------TGGTCATTACACTTTATAACTGACCATCGCATATGACCATTGTAGTCATGACTTATTAATTGATAAAC-ATATAAATAAAC-ATTTA-AACAACTATACTGATTATA--CCAGGTAAGAATAACGCTATGATCAATTATGATATATTTATCTTCATAATTTAGTTTAAATAATTGTTCAATATTGTTTGATAAGGGTGTAATTTTTGGATAATTGTATAAACATATTCCATTTTAGTACTGG-CGGCCATGT-------TTTATTTTATAT-----TTGATTATGTGATGACAGTTTATCATGAATTGACCATCGTATATGACCATTGTAGTTATGAATTATACATTCATAAACTTATTAATATAATATCAATAGAGAACCCAGTAA-AC------AACCGGCA-ACACGAAGCCGTGGCGGTGGAGATCGAACCTACCGGGGTCCTATGCTTTTAATACATTTGTACCATCATATCATGCAGAACACAATTACGTTTCGTTAGTGAGTGTTTTATTTCTTATTTTCTAAAAAA-AA-TTGATTTCCTCCTTAAAATGAAATCATTTGTATAATG---TATTGGAT---AC-TCTATGTTTTGGCCCTGTTGTCTTGTATGTATTCAAGTATACGTTATCACAT-GG--ATCATTGACTTGTAGGTATTTGTTAGTTCAACAATACCTCAGAATAATTGTTGATATATATACATAGTAAAAATCGTTTACTGTTTACGCCAT--AACATATTTTTGTGTTGATACGCCGTAAAACCCCACGTCACTTCACTGGACGATTTGCACTGATTAA-CATACCCGTATCCATTGATCAAACGAAACANNNNNNNNNN-NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTAACGGTACATTATAATCACATAATTATTCTTGTTA-TGTTTTGGAACGTGTACTTACTTATGTTGCTCTATT-TCGCACCTGCGTTTAGTTTCTATCGCACTTTTTCGTAAAGGGCATACGAACAATACAAATCCGAACGACATGGTCAGGGTGAGCTGTTGTCAAGATTTCGATATACATTATCAGTTGTCTG-ATTTTAAAGTTGCTTAGACATTTATTAAATTTGCTGGATCTCTACGATTAGAATCGCAATGGTGCTGTCTGCTGCTCAGTTCATTGTGCATGTAATGAAAGGTGTGGCTACGACTGGTACTGCTACTGC---TGCTGCTGCTGTCTCCATGCGGGACGTTTGATGGACGATTTTGGT-GTCTTGCGGACGTTGTGGTTTCCTGGTAACGCTCTGCAGAACTGCTCCTGAGGTA----AAAACATTTTCAAATCAATTTAACATCATTGTTATGATCAGTAAGCAATT-TTACATTACCCGGAGGCCAGGCCCGGTAAG
gi|16 : TCTGTAAACCACTAATGTTATTTACATTATGTA-CGTGTGAATCGATGAGTTCCGATTGATGGTCAATACACTC-ATGATTGACCATTGTATATATCTATCTTATATATGAATTACGCATTCATAAACAATGTAAATAAACTA-TCA-CACG--TGTACTTGTAATAAGAGAGGTAAGACTAA----AAGATAA---AT
gi|19 : tataAAGAAA-TTGATTTGCTCTTTAAAA-GAAA-CG------T-GTG-GCT-TCGGATGTCATATCCATCTATTGA-CCTACTGTCT------TATCCGAGCATATGCTA-CACAT-AG--AACATTGG-TTTTAGAT
gi|2 : AGTTATGT-AACGTA---CATTTTATTAAC------CCATGTGTTTCCCTTTACGTAACGTGTGAATCGATTG-GTCATTACACTTT---A-AAACTGACCATCGCATATGACCATTGCAGTTATGAATTATACATTGATAGACATA-TAAT-TAA
gi|2 : gtactaaTTACGTAACGTGTGAATCGAT-------------TGGTCATTACACTTTAAAACTGACCATCGCATATGACCATTGCAGTTATGAATTATACATTGATAGAC-ATATAATTAAAC-A-TTGGAACAACTATACTGATTAAA--ACAGGTAAGAGTCACGATAAGATCA---ATGCTATCTTTATCTTCATAATATA-TTTCAACAATGATTCAATATTTTTTGATAAGGATGTATTTTATGGATAATTGTATTAACGTATTCCATTTGACTACC-GTCGGCCATGT-------TTT--TTAATAT-----TTGATTATATGATGACACTTT---AT-AATTGACCATGGTATATGACCATTGCAGATATGAATTATACATTCATGAGCTTATTAATATAATA--AATAAACAACT-GGCAACACTCTTTTAATTAATACACACGAAGTCGTGACGGTGGGGATCGAACCTACCCTGGTTCAATGCTTTAGATATATTTATACCACCATACCATGCGTTACACAATTTAGTTTTGTGAGTGAGTGTTTTATTTCATATTTTGTAAAAAAGAACTTGATTTCCTTCTAAAAATGAAATCATTTCTATTATGTGCTATTGGAT---A-ATTTATGTTTGAGCCCTGTTGTCTTGTATATATTCAAGCATACGATATCACATCGGTTATAATTGACTTCTTGATATTTGTTAGTT-AACAATACCTCAGAATAATTATTCATATTCATACCGAGT-AAAATCGTTTACTGTTCGGGTCATACAGCATAGTTTTGTATTAATACGCCGTCAAACCCCACATCCATTCACTGGATGATTGGC--------A-CATACCCATATTCATAGATCAAACGGTACGTGTCAAGTTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAATCCC---ATTATTCTTATTACTGTTTTGAAACGTGTATTTGTTTACGTTGCTCTATTATCACAACTGAGTTTAATTTCTCTCGCGCCTTTTTGTAA---GCATACGAACAAAACAAATCCAAACGATATGGCCAGAGCGAGCTGTTGTCAAGTTTTCGATACACAC-----GTAATC---ATT---AAGTTGCTTAGACATATTTCACTTTTGCTAGATCTCTACGACTAGAATCACCATGGTGCTGTCTGTTGTTCGGTTAATTGTGCATGTGGTGAAGGGTGTGGCTGCTAATGGTACTGCTACTGCTGTTGCTGCTGCTGTCTCCATGTGGGACGTTTGGTGGATGGTTTTCGTCGTCTTGTGGACGTTGTGGTGTCCTGTTAACGCCCAGCAGAACTGCTCCTGAGGTGAGTTAAAACATGTTCAAATCATTTTTATATCAGTATTATTATCAGTTAGCAA-TATTACATTACTCGacattggaacaactatactgattaaaacaggtaagagtcacgataagatcaatgctatctttatcttcataatatatttcaacaatgattcaatattttttgataaggatgtattttatggataattgtattaacgtattccatttgactaccgtcggccatgttttttaatatttgattatatgatgacactttataattgaccatggtatatgaccattgcagatatgaattatacattcatgagcttattaatataataaataaacaactggcaacactcttttaattaatacacacgaagtcgtgacggtggggatcgaacctaccctggttcaatgctttagatatatttataccaccataccatgcgttacacaatttagttttgtgagtgagtgttttatttcatattttgtaaaaaagaacttgatttccttctaaaaatgaaatcatttctattatgtgctattggataatttatgtttgagccctgttgtcttgtatatattcaagcatacgatatcacatcggttataattgacttcttgatatttgttagttaacaatacctcagaataattattcatattcataccgagtaaaatcgtttactgttcgggtcatacagcatagttttgtattaatacgccgtcaaaccccacatccattcactggatgattggcacatacccatattcatagatcaaacggtacgtgtcaagttgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaatcccattattcttattactgttttgaaacgtgtatttgtttacgttgctctattatcacaactgagtttaatttctctcgcgcctttttgtaagcatacgaacaaaacaaatccaaacgatatggccagagcgagctgttgtcaagttttcgatacacacgtaatcattaagttgcttagacatatttcacttttgctagatctctacgactagaatcaccatggtgctgtctgttgttcggttaattgtgcatgtggtgaagggtgtggctgctaatggtactgctactgctgttgctgctgctgtctccatgtgggacgtttggtggatggttttcgtcgtcttgtggacgttgtggtgtcctgttaacgcccagcagaactgctcctgaggtgagttaaaacatgttcaaatcatttttatatcagtattattatcagttagcaatattacattactcg
gi|3 : gtactaaagttatgtaacgtacattttattaacccatgtgtttccctTACGTTATCACAT-GG--ATCNNNNNNNNNNNNNNNNNNNNNNNNN-NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGACGATTGGCACTGA-TAAACATACCCGTATTCATTGATCAAACGAAACANNNNNNNNNN-NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTAACGGTACATTATAATCACATAATTATTCTTTTTA-TGTTTTGAAACGTGTACTTACTTATGTTGCTCTATT-TCGCACCTGCGTTTAGTTTCTATCGCATTTTTTGGTAAAGGGCATACGAACAATACAAATCCGAACGACATGGTCAGGGTGAGCTGTTGTCAAGATTTCGATATACATTATCAGTTGTC-GGATTTTAAAGTTGCTTAGACATATACTTAATTTGCTGGATCTCTACGATTAGAATCGCAATGGTGCTGTCTGCTGCTCAGTTCATTGTGCATGTGATGAAGGGTGTGGCTGCGACTGGTACTGCTACTGCTGTTGCTGCTGCTGTCTCCATGCGGGACGTTTGATGGACGATTTTGGT-GTCTTGCGGACGTTGTGGTTTCCTGGTAACGCTCTGCAGAACTGCTCTTGAGGTA----AAAACATTTTCAAATCAATTTTTCATCATTGTTATGATCAGTAAGCAA-T-TTACATTACCCGGAGGCCAGGCCCGGTAAG
gi|7 : TTTAACATTTCACTACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGACACCAAAGTATGGGACGGAGAGA--GAGAGAGAGGTTAAATATTATATTTGTTTCACTTAAATAGATTAGCTGAAATAATACAATATAGCCATATTTAGTTTCAGGCACATGTATATCGTAGACAGTACTATCGTTTCATGTAACTAATATTTTACTAACCCCTGTGTTTCCCCTCTACCTCT-TAAACT-CTTTTGTTATTTAAATTATGTAACGTGTGAATCGAT-------------TGGTCATTACACTTTATAACTGACCATCGCATATGACCATTGTAGTCATGACTTATTAATTGATAAAC-ATATAAATAAAC-ATTTA-AACAACnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnattagtagttggatgggtgggtggactgaagggcgattgtgctcttgttgaacgggcggacggatgtaattccatgtgaacggtggtacaggcgagtgggcggacgcacggacagaatatacattttcaagtgcatgtttgtaatggcattaggcattttatttgacctgtatttataggcgtagcatagtttcagttaatgtgggagaggcaacctggggagtgggagattatgagggacatctctttcgccagttggcctctccagaaaatgtcgatactttgaacaccaaaggctgcgtcttagtaagtgtttatgataaattatgatttatatttctccgcaatatttttttagttataaacgtttt
19 sequences could not be aligned to this reference sequence:
Unaligned ( gi|4 ): CTTTAGAAATTCCATTTGAACGTAGTGAATTATAGGCGTAGGATCGTTTCTGTAAATGGAAGATGGGTAACCTAGGGAGTGAGATGCTGCACATTTAAGTGAGTGTTAAGGATAAATTATGATTGATATTTACTCCAAAGTATTTTGTGAGTTTAAAACATTTTTTGTGTAAAACAAACGGTAATATGTATTAAAAAATAACATTCACCTAGTATTTAAACCGGTTCGTCAGCACATCATGCACTGGGAGCCTAGGCATAATGATGAAAGAGTGTGGGAGAGTAACATGTTAATAATATACGTTTTTATTTAACACACGTACGCAAGTATCGCACGCACACATGCACAGGCGTTCCATACCCGAAAAAAATACACACACAAAACTGAACAAAATATGCAGGAAACCAGGGCACATGGGAAAATGCGACAACCTCTCGCACTGATTTGGGTATGGGATGCCTCGCTCAGAATGTGTTATATATTCTTAACCTATTGCTAGATACAAATAAGATATTAGGATGAGAAAACGGCTGTTACTTAAATAATTTAATATATTGTGACTTTAAAAGTATTAAATAAACAGACTGTCACGTAAAAACTTAGAAAAAGTTATATGATGTAACAAAGAAACCCCACCCCCTGATTTTATACTCAAGTCATGGAAGATGGTTTCATGCTGGCGGGGACACGGGAGATCTCCTCCGAAATTTTTATGACTAAAAAATAAATGTTCATTTTATTTAGTTTTAGAGAAAATAGATGTTAATATTTATTCTATTTTGTTATTTTTAAATGCTTACAAATTAACATACAATACTCTTAGAAAATATACAATCAGATGTATTTTAAAGATAAACCGAGTTTCAAACCCGATACCTCTTCCATTACAAGACAAAACGTGAAGGATAGTGTTGGACGAGGCTGGTGGCGATATTGGGGACTCCCTCGGATTTTTTTTTGTATTTAAACACCAAAGGCCTGACTGAGTGAGAATTTAAGACAAATATATGGATGGTGAATCAGGAATTTGGTATTATGTGACGATAAACATTGCTATTAAAATATTGGGGGAGGGCAAAGTATATGCATGCTGGCCCCCAACATGAACATTGATGGGGTTGGGTAGAGGCACTCCGACTGCTCCCGGCTCCTACACCTATAGTAATAAAAAAACGGATCACAC
Unaligned ( gi|5 ): TTTAAAAATGAGCGTCCAATGGGTTTTAAACAACATGCATGACAACATGACAAAACAAAACGTGAGGAAGAATATGAAGAGGGCTGGTGGCAGCACTGGATATTAACCTGAAAAAATATGATATTTAAAATAACAAATCCAGCATTCTAGTGAGTTTTGAGGGGTAAAAAATATGTTGTCATTTACTCCATATGTTTGATATCGTGTGACCTTTAGACATACAAAATATTGGGGTGGGGGACAAAGTTTATGCAGGACCCCCAACCCGAAATGGGAGGGAGTTCCTCTGGCCTCCGGCTCCTACGCCTTTGTTACTCCAGTGCGGGAGAGGATGTCCCTTTGCTGGTTGGGGTATGGGCGGCCTCGTATGGAAAATCTTTATATATTAAAAATTAAATACTGCATGTAGGTAACAATAAGGTGGAAAAAGTTGTTGTTTACTCCAATATTTTTTGTGACAATTAAACGGTTTATTAAGAAAAAATATGTATTAAAAATGAGCGTCCACTGGATTTAAACCTCATGTATGACAACTGTGAGAAAGAATACGAAGAGGGCTTGCGATGGTACGGGGTCTTAACCTGGAAAATTTAGATATATTAAAACAAAAAATGCTGCATTTGTGGGGGGGGGGGGATAAAATATGCTCTATTATTACCCCAAAATTTTGGTATTTTGTGACCTTTAAACATTTTTTATCAAAGTATTGGGCGAGGGTGCATAGTATAAGCTGGCCAACCTGAGTACTGTAGACGGGGACGGCTCCCATTGCCTCGTCCAGGTCGGCTCCTACGCCT
Unaligned ( gi|6 ): ATACCCAATAGGAACGATATTCGTTGCCCTTAGGGGATTCTCTGCTTATAGGGGTATGGGGACTTCTCTCCGAAAGTTTGGATATCTTAATAAGCAAATACTGCATTCAAGTTAGTTTAAAGGGGAAACGATTCTTAATTACATCAATGTTGGAGGGGGTGTCCCCTGCCGGTGGGGCTACTGGCCTATCCAGGAAAAAATAGATCAAATACAAAAAATATATAAGTTGTATTAAGATATGAGCATCCAAAATGTTTAAATCACTTGCATGACAAAACCTTAGGAAGTGAGGAAGAGTGTGAATAGTACTCGTGGCGATACGGGGTTTTAAACCAGACTTTTTTATATTTAGAACAACAAATGTTGCATTCTAGTGATTGTTTAGCTTAAAAATATGTTGTCATTTACTCCAGATGTTTGGTTTTGGTTTTTGTGACACTTAGGCATTTTTATCAAAATATTAGGGGGATTGGGATGGGCAAAGTATAAACTGGCCCCAAACCTGAACATTGGTGGAGCGGCCCCTTCTGGTCCCCGTGGCTCCTACGCA
Unaligned ( gi|8 ): TATATATATATTGTCAGAAATGACACTATCAAGCTCATGTTAGAAATTGCATTAGAAATTTCATTTCAAATGTATTACATGTATTATAGGCGTATTATCGTTTCAATAATTGGAGGTGGGCAACCACGGGAGCGGGAGGTTGTGAGGGACACCTCCCCTCCGGTTGGTTGTAATACAAAGGCTTCCCTAAGAATATTTCGATATCTTAAACATTAAAAGCTGTGTTTTAATGAGTATTTAGTGAGTTTATTTACTTCCCAATAGTTTATATAGTGAATTTTAAACGTTTTATGAAGTAAAAACGATAATATGTATAAAAAAACGATCTTTAACCGGACTTAAATAACGGTACCTCAAGCACTGGAGCCACAAATGGTAAGATAGGGTTGATGGGGAAAATTTATTACGAAACATTTCAGTA
Unaligned ( gi|9 ): ATATAATATAAATGACATTTCGATTACAAAGTGAATTGTACAAATTCCGACAAACGGAGTATGTTTTGTTCACGGCCGTAGATGAGTTTCAATTATTGAGGAGGGGAGGGCATTTTGGTGTATCCCCTCCCGTTGTTGATGGGGGATATCCTTGAACATTTTGATATATTCAACACCAAATGCTGCATAATAGGAAGATGTTATGAATAATTTTAGGAGTTTTATTTACTCATGGGACCAATATTGTGTGACTTAAATGTTTTATTAAGT
Unaligned ( gi|10 ): ACGGTGAGGCAAAAGGTTAGGAAAAGCGTGTAGGTATGCTGGTAGCATGTGGTGACCTCCTTAGGAAATTGTGATATTTAAAATACCAAATGCTGCATTCTAATGAGCTGTAAGGATAAAATAATATGCTTGTCATTTATTCCAGATGATTGTTTTTTTTTTTCACTTTTAATTATTGTTATTAAGATAAGGGATATATATGCTGCCCCTCCTTAACATTAGAAGGGGGGCCAACCCAACTGCTACCTCCCCTGGCTCCTATGCTT
Unaligned ( gi|11 ): TTTCCTCAGAAAGAATACAAGACTTTATTTAAAAAAGACGAAGGTCCCCGGGATTTAAAACACGCACGCAAGTTGCGATCCAAAACGTGACGGAGAGTGTAGAAGGCTGGCGATAGTGGGGCGCCCCCTGAAATATTTGATGTTTGGAACACCAAATTTTGCATTCTAGTGATTTGTTTAGTGATTATCGTTTACTTCAGATGTTTTATATTTTGCGACGTTTTTTTTTTTATATAAAACTATCTGGGTGG
Unaligned ( gi|12 ): GAGTGTATGAGGAGAGAGTGTATGAGGAGAGAATGTTGGATCGAGCTAATGGCGGCACACAACCAAGCGGAATTTTTTTATATTTAAAACAACAAATGCTGCATTATAGTGAGTTGTTAGGGTAAAGAATGAGGTGTTGTCATTAAGGTGTTTGGTATATTGTGACTTTAAAACATTTTTATCAAAATATTGGGGTGGGGTGGCAACTTGAACATTGGTGGGAGGGGATAGGGCGC
Unaligned ( gi|13 ): AATATTGGGGGTAGGAGCAACGTGTATGCTCCCCCATCTTAACATTGAAGTGGTTGGGTGGATCCCCAACCACACACGAGTTTTTCGCTTACGGTAATAAATATTGATCACAGAGGTTTTCATAAATTGGAATGAAGGCCAATGTAATGCATAACAGGTCATATTTGACAACCTGTACTTTTGGTGTAAAACAACTCACTAGTCATATGCATGAGCAACTGCGTAGAACT
Unaligned ( gi|14 ): GTTTTAAACCACATGAATGACAAGCCAAAATGTAAGGAAGAGTGTGAAGGGGTGGGATCCGATACGGGGTGTTAACCTGGACTTTTTTATATTTAAAACAAAAAATGCTGCATTCTAGTGATTTTAGGGTAAAAATATGTTGTCATTTACTCCAGATGTTTGGTATTTTGTGACCTTTTTACATTTTTATAAAAAAAATGGGGGGGGGGGGCAAAGTATTTGC
Unaligned ( gi|15 ): TATTTAGAAACAATAAATGTTGCTTTTAATGAGCTTTTAGGATAACACTATGGATTGTCATTTATTTCAGATGTTTGATATTTTGTTACATTTAAACATTTTTATTAAAATATGGCGTTGGGGCGGGGTACAAAGTATGCCATATTAGCTGGCCGCCTAACCCCTAACCCGTCATTGAACATTAGTGGGGCCCTGAA
Unaligned ( gi|17 ): AGAAAAGCTTAGACAAAAAAGTATGAGATATATCAAAAAGAAACGAACCTCCACCGGACGTGGGGGAGACTGTGAAAAATTGTATTATCGCTGGTCGGGTTACGGGAGGTCGCCCCCGTAAATTTGTGATATTTGTACATTCTATTTAGTTTTAGGGGAAATGGTTGTTATTCAA
Unaligned ( gi|18 ): ATGGTAAAATATTGGAAGGGGGGTGCAAAGTATATACTAGGCTCCTCCAACCTGAAGAAGTGGGGGTGGGGTTGGGGGCGGACCCCATCCCTGGCTCCTACGCTTATGGTATATAC
Unaligned ( gi|20 ): TTAAAGGCAATTCAATACATAACATGCTATTATATAATAATATTTATCACAGCATATTCTTTTGATGTACTTTTGGTGTAGAAAAATCTCATTTATTAGATGCA
Unaligned ( gi|21 ): CAAAAATGCTGCAATCTAGCTATAGGCTAAAGTTAAGTTTTATTAATGTTTGGTATTTTGTGTTGTTTTTTTTTTTAAATGGGGGGTGGGGGTAATGTCTATA
Unaligned ( gi|22 ): TACACCGGCCTTCAACATGAACATTGATGGAGTTAGGTGAAGGCGCACCAACTGCTTCTGGTCCCACGCCTATGGTAATATAAGATGGACCACAGA
Unaligned ( gi|23 ): GCATTTTTATTAATCTATTAGGGACAAGGCAATATATATACTGGCCTACCCATCCTGAACATTAGAATAGGGGTGCCGGTCCCCGACTCT
Unaligned ( gi|24 ): TTGAGTAAAATACTGGGGTGTGGGGTGGGTCAAAATATATGCAGGCCCCTCCAACCTGAACAG
Unaligned ( gi|25 ): CCAGATGTTTGATACTTTGTCACTTTTAACATCTTTATTGAAATATTGTGT
Alignments
lowQualScore : 11111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 7777 1 1 5555555555555 1 1 11 11 333 222 1 111 333 4444444 11 33333 333333 11 1 1 333333 1 1 1 4444444444 22 333333 1 11 1 1 11 1111111111 666666666666666666666666666666666666666666666666 1 1 333 1 2222 111
lowQualScore : 44444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444 0000 3 3 3 5555555555555 3 1 22 0 0 00 88 1 111 333 1 1 1 5 1 1 1 1 1 777 7 1 333 3333333 11 33333 0 7 333333 7 7 88 1 5 5 000000 5 22 1 1 22 22 1 1 1 2 3 7 7 8888888888 00 7 0 333333 6 7 3 0 1 3 0 33 5 1 3 1 1 22 3 1 22 1 1 22 7777777777 0 000000000000000000000000000000000000000000000000 7 1 3 0 3 0 3 7 0 7 333 7 0 7 3 8888 777
lowQualScore : ........................................................................................................ .... . . . ............. . . .. . . .. .. . ... ... . . . . . . . . . ... . . ... ....... .. ..... . . ...... . . .. . . . ...... . .. . . .. .. . . . . . . . .......... .. . . ...... . . . . . . . .. . . . . . .. . . .. . . .. .......... . ................................................ . . . . . . . . . . ... . . . . .... ...
lowQualScore : 00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 0000 3 3 2 0000000000000 2 0 00 0 0 00 33 0 777 333 0 0 0 0 0 0 0 0 0 777 3 0 333 3333333 00 33333 7 3 777777 3 3 00 0 0 0 000000 0 00 0 0 00 00 0 0 0 0 3 3 3 3333333333 00 3 7 777777 7 3 7 7 2 2 0 88 2 0 3 0 0 00 3 0 77 0 0 00 7777777777 7 333333333333333333333333333333333333333333333333 3 0 3 7 3 7 7 3 7 3 333 3 7 3 3 3333 777
consensus : TTTAACATTTCACTACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGACACCAAAGTATGGGACGGAGAGA--GAGAGAGAGGTTAAATATTATATTTGTTTCACTTAAATAGATTAGCTGAAATAATACAATATAGCCATATTTAGTTTCAGGCACATGTATATCGTAGACAGTACTATCGTTTCATGTAACTAATATTTTACTAACCCCTGTGTTTCCCCTCTACCTCT-TAAACT-CTTTTGTTATTTAAATTATGTAACGTGTGAATCGAT-------------TGGTCATTACACTTTATAACTGACCATCGCATATGACCATTGTAGTCATGANTTATNNATTGATAAAC-ATATAAATAAAC-ATTTAAACAACTATACTGATTATA--ACAGGTAAGANTAACG-TAAGATCA---ATGNTATNTTTATCTTCATAATNTAGTTTNAACAATNGTTCAATATTNTTTGATAAGGGTGTANTTTNTGGATAATTGTA-T-AACGTATTCCATTTTANTACC-G-CGGCCATGT-------TTTACTTAATAT-----TCGATTATGTGATGACACTTT---ATGAATTGACCATCGTATATGACCATTGCAGTTATGAATTATACATTCATAAACTTATTAATATAATATCAATAGANAACCCGGCAACACTCTTTTAACCGGCACACACGAAGCCGTGGCGGTGGGGATCGAACCTACCNNGGTCCNATGCTTTNGATACATTTGTACCACCATACCATGCGNNACACAATTNNGTTTCGTNAGTGAGTGTTTTATTTCNTATTTTNTAAAAAAGAA-TTGATTTCCTCCTTAAAATGAAATCGTTT-TA-T-ATG-GCTATCGGAT---ACATCTATGTTTTGGCCCTGTTGTCTTGTATGTATTCGAGCATACGTTATCACAT-GG--ATCATTGACTTNTAGATATTTGTTAGTT-AACAATACCTCAGAATAATTGTTNATATNCATACNNAGT-AAAATCGTTTACTGTTCGNGCCATACAGCATANTTTTGTGTTGATACGCCGTNAAACCCCACGTCNNTTCACTGGACGATTGGCACTGA-TAA-CATACCCGTATTCATTGATCAAACGAAACGTGTCAAGTTG-NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTAACGGTACATTATAATCACATAATTATTCTTNTTA-TGTTTTGAAACGTGTACTTACTTACGTTGCTCTATT-TCGCACCTGCGTTTAGTTTCTATCGCGCTTTTTCGTAAAGGGCATACGAACAATACAAATCCGAACGACATGGTCAGGGCGAGCTGTTGTCAAGATTTCGATATACATTATCAGTTGTC-G-ATTTTAAAGTTGCTTAGACATATATTAAATTTGCTGGATCTCTACGATTAGAATCGCAATGGTGCTGTCTGCTGCTCGGTTCATTGTGCATGTGATGAAGGGTGTGGCTGCGACTGGTACTGCTACTGCTGTTGCTGCTGCTGTCTCCATGCGGGACGTTTGATGGACGATTTTGGT-GTCTTGCGGACGTTGTGGTTTCCTGGTAACGCTCTGCAGAACTGCTCCTGAGGTA----AAAACATTTTCAAATCAATTTTACATCATTGTTATGATCAGTAAGCAA-T-TTACATTACCCGGAGGCCAGGCCCGGTAAG
Reference ( family-220 ) : TTTAACATTTCACTACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGACACCAAAGTATGGGACGGAGA--GAGAGAGAGAGGTTAAATATTATATTTGTTTCACTTAAATAGATTAGCTGAAATAATACAATATAGCCATATTTAGTTTCAGGCACATGTATATCGTAGACAGTACTATCGTTTCATGTAACTAATATTTTACTAACCCCTGTGTTTCCCCTCTACCTCT-TAAACT-CTTTTGTTATTTAAATTATGTAACGTGTGAATCGAT-------------TGGTCATTACACTTTATAACTGACCATCGCATATGACCATTGTAGTCATGANTTATNNATTGATAAAC-ATATAAATAAAC-ATTTAAACAACTATACTGATTATA--ACAGGTAAGANTAACG-TAAGATCA---ATGNTATNTTTATCTTCATAATNTAGTTTNAACAATNGTTCAATATTNTTTGATAAGGGTGTANTTTNTGGATAATTGTA-T-AACGTATTCCATTTTANTACC-G-CGGCCATGT-------TTTACTTAATAT-----TCGATTATGTGATGACACTTT---ATGAATTGACCATCGTATATGACCATTGCAGTTATGAATTATACATTCATAAACTTATTAATATAATATCAATAGANAACCCGGCAACACTCTTTTAACCGGCACACACGAAGCCGTGGCGGTGGGGATCGAACCTACCNNGGTCCNATGCTTTNGATACATTTGTACCACCATACCATGCGNNACACAATTNNGTTTCGTNAGTGAGTGTTTTATTTCNTATTTTNTAAAAAAGAA-TTGATTTCCTCCTTAAAATGAAATCGTTT-TA-T-ATG-GCTATCGGAT---ACATCTATGTTTTGGCCCTGTTGTCTTGTATGTATTCGAGCATACGTTATCACAT-GG--ATCATTGACTTNTAGATATTTGTTAGTT-AACAATACCTCAGAATAATTGTTNATATNCATACNNAGT-AAAATCGTTTACTGTTCGNGCCATACAGCATANTTTTGTGTTGATACGCCGTNAAACCCCACGTCNNTTCACTGGACGATTGGCACTGA-TAA-CATACCCGTATTCATTGATCAAACGAAACGTGTCAAGTTG-NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTAACGGTACATTATAATCACATAATTATTCTTNTTA-TGTTTTGAAACGTGTACTTACTTACGTTGCTCTATT-TCGCACCTGCGTTTAGTTTCTATCGCGCTTTTTCGTAAAGGGCATACGAACAATACAAATCCGAACGACATGGTCAGGGCGAGCTGTTGTCAAGATTTCGATATACATTATCAGTTGTC-G-ATTTTAAAGTTGCTTAGACATATATTAAATTTGCTGGATCTCTACGATTAGAATCGCAATGGTGCTGTCTGCTGCTCGGTTCATTGTGCATGTGATGAAGGGTGTGGCTGCGACTGGTACTGCTACTGCTGTTGCTGCTGCTGTCTCCATGCGGGACGTTTGATGGACGATTTTGGT-GTCTTGCGGACGTTGTGGTTTCCTGGTAACGCTCTGCAGAACTGCTCCTGAGGTA----AAAACATTTTCAAATCAATTTTACATCATTGTTATGATCAGTAAGCAA-T-TTACATTACCCGGAGGCCAGGCCCGGTAAG
gi|1 : TTTAACATTTCACTACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGACACCAAAGTATGGGACGGAGA----GAGAGAGAGGTTAAATATTATATTTGTTTCACTTAAATAGATTAGCTGAAATAATACAATATAGCTATATTTAGTTTCAGGCATATGTATATCGTAGACAGTACTATCGTTTCATGTAACTAATATTTTACTAACCCCTGTGTTTTCCCTCTACCTCT-TAAACT-CTTTTGTTATTTAAATTATGTAACGTGTGAATCGAT-------------TGGTCATTACACTTTATAACTGACCATCGCATATGACCATTGTAGTCATGACTTATTAATTGATAAAC-ATATAAATAAAC-ATTTAAACAACTATACTGATTATA--CCAGGTAAGAATAACGCTATGATCAATTATGATATATTTATCTTCATAATTTAGTTTAAATAATTGTTCAATATTGTTTGATAAGGGTGTAATTTTTGGATAATTGTA-TAAACATATTCCATTTTAGTACTGG-CGGCCATGT-------TTTATTTTATAT-----TTGATTATGTGATGACAGTTTATCATGAATTGACCATCGTATATGACCATTGTAGTTATGAATTATACATTCATAAACTTATTAATATAATATCAATAGAGAACCCAGTAA-AC------AACCGGCA-ACACGAAGCCGTGGCGGTGGAGATCGAACCTACCGGGGTCCTATGCTTTTAATACATTTGTACCATCATATCATGCAGAACACAATTACGTTTCGTTAGTGAGTGTTTTATTTCTTATTTTCTAAAAAA-AA-TTGATTTCCTCCTTAAAATGAAATCATTTGTA-TAATG---TATTGGAT---AC-TCTATGTTTTGGCCCTGTTGTCTTGTATGTATTCAAGTATACGTTATCACAT-GG--ATCATTGACTTGTAGGTATTTGTTAGTTCAACAATACCTCAGAATAATTGTTGATATATATACATAGTAAAAATCGTTTACTGTTTACGCCAT--AACATATTTTTGTGTTGATACGCCGTAAAACCCCACGTCACTTCACTGGACGATTTGCACTGATTAA-CATACCCGTATCCATTGATCAAACGAAACANNNNNNNNNN-NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTAACGGTACATTATAATCACATAATTATTCTTGTTA-TGTTTTGGAACGTGTACTTACTTATGTTGCTCTATT-TCGCACCTGCGTTTAGTTTCTATCGCACTTTTTCGTAAAGGGCATACGAACAATACAAATCCGAACGACATGGTCAGGGTGAGCTGTTGTCAAGATTTCGATATACATTATCAGTTGTCTG-ATTTTAAAGTTGCTTAGACATTTATTAAATTTGCTGGATCTCTACGATTAGAATCGCAATGGTGCTGTCTGCTGCTCAGTTCATTGTGCATGTAATGAAAGGTGTGGCTACGACTGGTACTGCTACTGC---TGCTGCTGCTGTCTCCATGCGGGACGTTTGATGGACGATTTTGGT-GTCTTGCGGACGTTGTGGTTTCCTGGTAACGCTCTGCAGAACTGCTCCTGAGGTA----AAAACATTTTCAAATCAATTTAACATCATTGTTATGATCAGTAAGCAATT-TTACATTACCCGGAGGCCAGGCCCGGTAAG
gi|16 : TCTGTAAACCACTAATGTTATTTACATTATGTA-CGTGTGAATCGATGAGTTCCGATTGATGGTCAATACACTC-ATGATTGACCATTGTATATATCTATCTTATATATGAATTACGCATTCATAAACAATGTAAATAAACTATC---ACACGTGTACTTGTAATAAGAGAGGTAAGACTAA----AAGATAA---AT
gi|19 : tataAAGAAA-TTGATTTGCTCTTTAAAA-GAAA-CG-------T-GTG-GCT-TCGGATGTCATATCCATCTATTGA-CCTACTGTCT------TATCCGAGCATATGCTA-CACAT-AG--AACATTGG-TTTTAGAT
gi|2 : AGTTATG-T-AACGTA---CATTTTATTAAC------CCATGTGTTTCCCTTTACGTAACGTGTGAATCGATTG-GTCATTACACTTT---A-AAACTGACCATCGCATATGACCATTGCAGTTATGAATTATACATTGATAGACATA-TAAT-TAA
gi|2 : gtactaaTTACGTAACGTGTGAATCGAT-------------TGGTCATTACACTTTAAAACTGACCATCGCATATGACCATTGCAGTTATGAATTATACATTGATAGAC-ATATAATTAAAC-ATTGGAACAACTATACTGATTAAA--ACAGGTAAGAGTCACGATAAGATCA---ATGCTATCTTTATCTTCATAATATA-TTTCAACAATGATTCAATATTTTTTGATAAGGATGTATTTTATGGATAATTGTATT-AACGTATTCCATTTGACTACC-GTCGGCCATGT-------TTT--TTAATAT-----TTGATTATATGATGACACTTT---AT-AATTGACCATGGTATATGACCATTGCAGATATGAATTATACATTCATGAGCTTATTAATATAATA--AATAAACAA-CTGGCAACACTCTTTTAATTAATACACACGAAGTCGTGACGGTGGGGATCGAACCTACCCTGGTTCAATGCTTTAGATATATTTATACCACCATACCATGCGTTACACAATTTAGTTTTGTGAGTGAGTGTTTTATTTCATATTTTGTAAAAAAGAACTTGATTTCCTTCTAAAAATGAAATCATTTCTATT-ATGTGCTATTGGAT---A-ATTTATGTTTGAGCCCTGTTGTCTTGTATATATTCAAGCATACGATATCACATCGGTTATAATTGACTTCTTGATATTTGTTAGTT-AACAATACCTCAGAATAATTATTCATATTCATACCGAGT-AAAATCGTTTACTGTTCGGGTCATACAGCATAGTTTTGTATTAATACGCCGTCAAACCCCACATCCATTCACTGGATGATTGGC--------A-CATACCCATATTCATAGATCAAACGGTACGTGTCAAGTTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAATCCC---ATTATTCTTATTACTGTTTTGAAACGTGTATTTGTTTACGTTGCTCTATTATCACAACTGAGTTTAATTTCTCTCGCGCCTTTTTGTAA---GCATACGAACAAAACAAATCCAAACGATATGGCCAGAGCGAGCTGTTGTCAAGTTTTCGATACACAC-----GTAATC---ATT---AAGTTGCTTAGACATATTTCACTTTTGCTAGATCTCTACGACTAGAATCACCATGGTGCTGTCTGTTGTTCGGTTAATTGTGCATGTGGTGAAGGGTGTGGCTGCTAATGGTACTGCTACTGCTGTTGCTGCTGCTGTCTCCATGTGGGACGTTTGGTGGATGGTTTTCGTCGTCTTGTGGACGTTGTGGTGTCCTGTTAACGCCCAGCAGAACTGCTCCTGAGGTGAGTTAAAACATGTTCAAATCATTTTTATATCAGTATTATTATCAGTTAGCAA-TATTACATTACTCGacattggaacaactatactgattaaaacaggtaagagtcacgataagatcaatgctatctttatcttcataatatatttcaacaatgattcaatattttttgataaggatgtattttatggataattgtattaacgtattccatttgactaccgtcggccatgttttttaatatttgattatatgatgacactttataattgaccatggtatatgaccattgcagatatgaattatacattcatgagcttattaatataataaataaacaactggcaacactcttttaattaatacacacgaagtcgtgacggtggggatcgaacctaccctggttcaatgctttagatatatttataccaccataccatgcgttacacaatttagttttgtgagtgagtgttttatttcatattttgtaaaaaagaacttgatttccttctaaaaatgaaatcatttctattatgtgctattggataatttatgtttgagccctgttgtcttgtatatattcaagcatacgatatcacatcggttataattgacttcttgatatttgttagttaacaatacctcagaataattattcatattcataccgagtaaaatcgtttactgttcgggtcatacagcatagttttgtattaatacgccgtcaaaccccacatccattcactggatgattggcacatacccatattcatagatcaaacggtacgtgtcaagttgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaatcccattattcttattactgttttgaaacgtgtatttgtttacgttgctctattatcacaactgagtttaatttctctcgcgcctttttgtaagcatacgaacaaaacaaatccaaacgatatggccagagcgagctgttgtcaagttttcgatacacacgtaatcattaagttgcttagacatatttcacttttgctagatctctacgactagaatcaccatggtgctgtctgttgttcggttaattgtgcatgtggtgaagggtgtggctgctaatggtactgctactgctgttgctgctgctgtctccatgtgggacgtttggtggatggttttcgtcgtcttgtggacgttgtggtgtcctgttaacgcccagcagaactgctcctgaggtgagttaaaacatgttcaaatcatttttatatcagtattattatcagttagcaatattacattactcg
gi|3 : gtactaaagttatgtaacgtacattttattaacccatgtgtttccctTACGTTATCACAT-GG--ATCNNNNNNNNNNNNNNNNNNNNNNNNN-NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGACGATTGGCACTGA-TAAACATACCCGTATTCATTGATCAAACGAAACANNNNNNNNNN-NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTAACGGTACATTATAATCACATAATTATTCTTTTTA-TGTTTTGAAACGTGTACTTACTTATGTTGCTCTATT-TCGCACCTGCGTTTAGTTTCTATCGCATTTTTTGGTAAAGGGCATACGAACAATACAAATCCGAACGACATGGTCAGGGTGAGCTGTTGTCAAGATTTCGATATACATTATCAGTTGTC-GGATTTTAAAGTTGCTTAGACATATACTTAATTTGCTGGATCTCTACGATTAGAATCGCAATGGTGCTGTCTGCTGCTCAGTTCATTGTGCATGTGATGAAGGGTGTGGCTGCGACTGGTACTGCTACTGCTGTTGCTGCTGCTGTCTCCATGCGGGACGTTTGATGGACGATTTTGGT-GTCTTGCGGACGTTGTGGTTTCCTGGTAACGCTCTGCAGAACTGCTCTTGAGGTA----AAAACATTTTCAAATCAATTTTTCATCATTGTTATGATCAGTAAGCAA-T-TTACATTACCCGGAGGCCAGGCCCGGTAAG
gi|7 : TTTAACATTTCACTACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGACACCAAAGTATGGGACGGAGAGA--GAGAGAGAGGTTAAATATTATATTTGTTTCACTTAAATAGATTAGCTGAAATAATACAATATAGCCATATTTAGTTTCAGGCACATGTATATCGTAGACAGTACTATCGTTTCATGTAACTAATATTTTACTAACCCCTGTGTTTCCCCTCTACCTCT-TAAACT-CTTTTGTTATTTAAATTATGTAACGTGTGAATCGAT-------------TGGTCATTACACTTTATAACTGACCATCGCATATGACCATTGTAGTCATGACTTATTAATTGATAAAC-ATATAAATAAAC-ATTTAAACAACnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnattagtagttggatgggtgggtggactgaagggcgattgtgctcttgttgaacgggcggacggatgtaattccatgtgaacggtggtacaggcgagtgggcggacgcacggacagaatatacattttcaagtgcatgtttgtaatggcattaggcattttatttgacctgtatttataggcgtagcatagtttcagttaatgtgggagaggcaacctggggagtgggagattatgagggacatctctttcgccagttggcctctccagaaaatgtcgatactttgaacaccaaaggctgcgtcttagtaagtgtttatgataaattatgatttatatttctccgcaatatttttttagttataaacgtttt
19 sequences could not be aligned to this reference sequence:
Unaligned ( gi|4 ): CTTTAGAAATTCCATTTGAACGTAGTGAATTATAGGCGTAGGATCGTTTCTGTAAATGGAAGATGGGTAACCTAGGGAGTGAGATGCTGCACATTTAAGTGAGTGTTAAGGATAAATTATGATTGATATTTACTCCAAAGTATTTTGTGAGTTTAAAACATTTTTTGTGTAAAACAAACGGTAATATGTATTAAAAAATAACATTCACCTAGTATTTAAACCGGTTCGTCAGCACATCATGCACTGGGAGCCTAGGCATAATGATGAAAGAGTGTGGGAGAGTAACATGTTAATAATATACGTTTTTATTTAACACACGTACGCAAGTATCGCACGCACACATGCACAGGCGTTCCATACCCGAAAAAAATACACACACAAAACTGAACAAAATATGCAGGAAACCAGGGCACATGGGAAAATGCGACAACCTCTCGCACTGATTTGGGTATGGGATGCCTCGCTCAGAATGTGTTATATATTCTTAACCTATTGCTAGATACAAATAAGATATTAGGATGAGAAAACGGCTGTTACTTAAATAATTTAATATATTGTGACTTTAAAAGTATTAAATAAACAGACTGTCACGTAAAAACTTAGAAAAAGTTATATGATGTAACAAAGAAACCCCACCCCCTGATTTTATACTCAAGTCATGGAAGATGGTTTCATGCTGGCGGGGACACGGGAGATCTCCTCCGAAATTTTTATGACTAAAAAATAAATGTTCATTTTATTTAGTTTTAGAGAAAATAGATGTTAATATTTATTCTATTTTGTTATTTTTAAATGCTTACAAATTAACATACAATACTCTTAGAAAATATACAATCAGATGTATTTTAAAGATAAACCGAGTTTCAAACCCGATACCTCTTCCATTACAAGACAAAACGTGAAGGATAGTGTTGGACGAGGCTGGTGGCGATATTGGGGACTCCCTCGGATTTTTTTTTGTATTTAAACACCAAAGGCCTGACTGAGTGAGAATTTAAGACAAATATATGGATGGTGAATCAGGAATTTGGTATTATGTGACGATAAACATTGCTATTAAAATATTGGGGGAGGGCAAAGTATATGCATGCTGGCCCCCAACATGAACATTGATGGGGTTGGGTAGAGGCACTCCGACTGCTCCCGGCTCCTACACCTATAGTAATAAAAAAACGGATCACAC
Unaligned ( gi|5 ): TTTAAAAATGAGCGTCCAATGGGTTTTAAACAACATGCATGACAACATGACAAAACAAAACGTGAGGAAGAATATGAAGAGGGCTGGTGGCAGCACTGGATATTAACCTGAAAAAATATGATATTTAAAATAACAAATCCAGCATTCTAGTGAGTTTTGAGGGGTAAAAAATATGTTGTCATTTACTCCATATGTTTGATATCGTGTGACCTTTAGACATACAAAATATTGGGGTGGGGGACAAAGTTTATGCAGGACCCCCAACCCGAAATGGGAGGGAGTTCCTCTGGCCTCCGGCTCCTACGCCTTTGTTACTCCAGTGCGGGAGAGGATGTCCCTTTGCTGGTTGGGGTATGGGCGGCCTCGTATGGAAAATCTTTATATATTAAAAATTAAATACTGCATGTAGGTAACAATAAGGTGGAAAAAGTTGTTGTTTACTCCAATATTTTTTGTGACAATTAAACGGTTTATTAAGAAAAAATATGTATTAAAAATGAGCGTCCACTGGATTTAAACCTCATGTATGACAACTGTGAGAAAGAATACGAAGAGGGCTTGCGATGGTACGGGGTCTTAACCTGGAAAATTTAGATATATTAAAACAAAAAATGCTGCATTTGTGGGGGGGGGGGGATAAAATATGCTCTATTATTACCCCAAAATTTTGGTATTTTGTGACCTTTAAACATTTTTTATCAAAGTATTGGGCGAGGGTGCATAGTATAAGCTGGCCAACCTGAGTACTGTAGACGGGGACGGCTCCCATTGCCTCGTCCAGGTCGGCTCCTACGCCT
Unaligned ( gi|6 ): ATACCCAATAGGAACGATATTCGTTGCCCTTAGGGGATTCTCTGCTTATAGGGGTATGGGGACTTCTCTCCGAAAGTTTGGATATCTTAATAAGCAAATACTGCATTCAAGTTAGTTTAAAGGGGAAACGATTCTTAATTACATCAATGTTGGAGGGGGTGTCCCCTGCCGGTGGGGCTACTGGCCTATCCAGGAAAAAATAGATCAAATACAAAAAATATATAAGTTGTATTAAGATATGAGCATCCAAAATGTTTAAATCACTTGCATGACAAAACCTTAGGAAGTGAGGAAGAGTGTGAATAGTACTCGTGGCGATACGGGGTTTTAAACCAGACTTTTTTATATTTAGAACAACAAATGTTGCATTCTAGTGATTGTTTAGCTTAAAAATATGTTGTCATTTACTCCAGATGTTTGGTTTTGGTTTTTGTGACACTTAGGCATTTTTATCAAAATATTAGGGGGATTGGGATGGGCAAAGTATAAACTGGCCCCAAACCTGAACATTGGTGGAGCGGCCCCTTCTGGTCCCCGTGGCTCCTACGCA
Unaligned ( gi|8 ): TATATATATATTGTCAGAAATGACACTATCAAGCTCATGTTAGAAATTGCATTAGAAATTTCATTTCAAATGTATTACATGTATTATAGGCGTATTATCGTTTCAATAATTGGAGGTGGGCAACCACGGGAGCGGGAGGTTGTGAGGGACACCTCCCCTCCGGTTGGTTGTAATACAAAGGCTTCCCTAAGAATATTTCGATATCTTAAACATTAAAAGCTGTGTTTTAATGAGTATTTAGTGAGTTTATTTACTTCCCAATAGTTTATATAGTGAATTTTAAACGTTTTATGAAGTAAAAACGATAATATGTATAAAAAAACGATCTTTAACCGGACTTAAATAACGGTACCTCAAGCACTGGAGCCACAAATGGTAAGATAGGGTTGATGGGGAAAATTTATTACGAAACATTTCAGTA
Unaligned ( gi|9 ): ATATAATATAAATGACATTTCGATTACAAAGTGAATTGTACAAATTCCGACAAACGGAGTATGTTTTGTTCACGGCCGTAGATGAGTTTCAATTATTGAGGAGGGGAGGGCATTTTGGTGTATCCCCTCCCGTTGTTGATGGGGGATATCCTTGAACATTTTGATATATTCAACACCAAATGCTGCATAATAGGAAGATGTTATGAATAATTTTAGGAGTTTTATTTACTCATGGGACCAATATTGTGTGACTTAAATGTTTTATTAAGT
Unaligned ( gi|10 ): ACGGTGAGGCAAAAGGTTAGGAAAAGCGTGTAGGTATGCTGGTAGCATGTGGTGACCTCCTTAGGAAATTGTGATATTTAAAATACCAAATGCTGCATTCTAATGAGCTGTAAGGATAAAATAATATGCTTGTCATTTATTCCAGATGATTGTTTTTTTTTTTCACTTTTAATTATTGTTATTAAGATAAGGGATATATATGCTGCCCCTCCTTAACATTAGAAGGGGGGCCAACCCAACTGCTACCTCCCCTGGCTCCTATGCTT
Unaligned ( gi|11 ): TTTCCTCAGAAAGAATACAAGACTTTATTTAAAAAAGACGAAGGTCCCCGGGATTTAAAACACGCACGCAAGTTGCGATCCAAAACGTGACGGAGAGTGTAGAAGGCTGGCGATAGTGGGGCGCCCCCTGAAATATTTGATGTTTGGAACACCAAATTTTGCATTCTAGTGATTTGTTTAGTGATTATCGTTTACTTCAGATGTTTTATATTTTGCGACGTTTTTTTTTTTATATAAAACTATCTGGGTGG
Unaligned ( gi|12 ): GAGTGTATGAGGAGAGAGTGTATGAGGAGAGAATGTTGGATCGAGCTAATGGCGGCACACAACCAAGCGGAATTTTTTTATATTTAAAACAACAAATGCTGCATTATAGTGAGTTGTTAGGGTAAAGAATGAGGTGTTGTCATTAAGGTGTTTGGTATATTGTGACTTTAAAACATTTTTATCAAAATATTGGGGTGGGGTGGCAACTTGAACATTGGTGGGAGGGGATAGGGCGC
Unaligned ( gi|13 ): AATATTGGGGGTAGGAGCAACGTGTATGCTCCCCCATCTTAACATTGAAGTGGTTGGGTGGATCCCCAACCACACACGAGTTTTTCGCTTACGGTAATAAATATTGATCACAGAGGTTTTCATAAATTGGAATGAAGGCCAATGTAATGCATAACAGGTCATATTTGACAACCTGTACTTTTGGTGTAAAACAACTCACTAGTCATATGCATGAGCAACTGCGTAGAACT
Unaligned ( gi|14 ): GTTTTAAACCACATGAATGACAAGCCAAAATGTAAGGAAGAGTGTGAAGGGGTGGGATCCGATACGGGGTGTTAACCTGGACTTTTTTATATTTAAAACAAAAAATGCTGCATTCTAGTGATTTTAGGGTAAAAATATGTTGTCATTTACTCCAGATGTTTGGTATTTTGTGACCTTTTTACATTTTTATAAAAAAAATGGGGGGGGGGGGCAAAGTATTTGC
Unaligned ( gi|15 ): TATTTAGAAACAATAAATGTTGCTTTTAATGAGCTTTTAGGATAACACTATGGATTGTCATTTATTTCAGATGTTTGATATTTTGTTACATTTAAACATTTTTATTAAAATATGGCGTTGGGGCGGGGTACAAAGTATGCCATATTAGCTGGCCGCCTAACCCCTAACCCGTCATTGAACATTAGTGGGGCCCTGAA
Unaligned ( gi|17 ): AGAAAAGCTTAGACAAAAAAGTATGAGATATATCAAAAAGAAACGAACCTCCACCGGACGTGGGGGAGACTGTGAAAAATTGTATTATCGCTGGTCGGGTTACGGGAGGTCGCCCCCGTAAATTTGTGATATTTGTACATTCTATTTAGTTTTAGGGGAAATGGTTGTTATTCAA
Unaligned ( gi|18 ): ATGGTAAAATATTGGAAGGGGGGTGCAAAGTATATACTAGGCTCCTCCAACCTGAAGAAGTGGGGGTGGGGTTGGGGGCGGACCCCATCCCTGGCTCCTACGCTTATGGTATATAC
Unaligned ( gi|20 ): TTAAAGGCAATTCAATACATAACATGCTATTATATAATAATATTTATCACAGCATATTCTTTTGATGTACTTTTGGTGTAGAAAAATCTCATTTATTAGATGCA
Unaligned ( gi|21 ): CAAAAATGCTGCAATCTAGCTATAGGCTAAAGTTAAGTTTTATTAATGTTTGGTATTTTGTGTTGTTTTTTTTTTTAAATGGGGGGTGGGGGTAATGTCTATA
Unaligned ( gi|22 ): TACACCGGCCTTCAACATGAACATTGATGGAGTTAGGTGAAGGCGCACCAACTGCTTCTGGTCCCACGCCTATGGTAATATAAGATGGACCACAGA
Unaligned ( gi|23 ): GCATTTTTATTAATCTATTAGGGACAAGGCAATATATATACTGGCCTACCCATCCTGAACATTAGAATAGGGGTGCCGGTCCCCGACTCT
Unaligned ( gi|24 ): TTGAGTAAAATACTGGGGTGTGGGGTGGGTCAAAATATATGCAGGCCCCTCCAACCTGAACAG
Unaligned ( gi|25 ): CCAGATGTTTGATACTTTGTCACTTTTAACATCTTTATTGAAATATTGTGT
Alignments
lowQualScore : 11111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 7777 1 1 5555555555555 1 1 11 11 333 222 1 111 333 4444444 11 33333 333333 11 1 1 333333 1 1 1 4444444444 22 333333 1 11 1 1 11 1111111111 666666666666666666666666666666666666666666666666 1 1 333 1 2222 111
lowQualScore : 44444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444 0000 3 3 3 5555555555555 3 1 22 0 0 00 88 1 111 333 1 1 1 5 1 1 1 1 1 777 7 1 333 3333333 11 33333 0 7 333333 7 7 88 1 5 5 000000 5 22 1 1 22 22 1 1 1 2 3 7 7 8888888888 00 7 0 333333 6 7 3 0 1 3 0 33 5 1 3 1 1 22 3 1 22 1 1 22 7777777777 0 000000000000000000000000000000000000000000000000 7 1 3 0 3 0 3 7 0 7 333 7 0 7 3 8888 777
lowQualScore : ........................................................................................................ .... . . . ............. . . .. . . .. .. . ... ... . . . . . . . . . ... . . ... ....... .. ..... . . ...... . . .. . . . ...... . .. . . .. .. . . . . . . . .......... .. . . ...... . . . . . . . .. . . . . . .. . . .. . . .. .......... . ................................................ . . . . . . . . . . ... . . . . .... ...
lowQualScore : 00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 0000 3 3 2 0000000000000 2 0 00 0 0 00 33 0 777 333 0 0 0 0 0 0 0 0 0 777 3 0 333 3333333 00 33333 7 3 777777 3 3 00 0 0 0 000000 0 00 0 0 00 00 0 0 0 0 3 3 3 3333333333 00 3 7 777777 7 3 7 7 2 2 0 88 2 0 3 0 0 00 3 0 77 0 0 00 7777777777 7 333333333333333333333333333333333333333333333333 3 0 3 7 3 7 7 3 7 3 333 3 7 3 3 3333 777
consensus : TTTAACATTTCACTACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGACACCAAAGTATGGGACGGAGAGA--GAGAGAGAGGTTAAATATTATATTTGTTTCACTTAAATAGATTAGCTGAAATAATACAATATAGCCATATTTAGTTTCAGGCACATGTATATCGTAGACAGTACTATCGTTTCATGTAACTAATATTTTACTAACCCCTGTGTTTCCCCTCTACCTCT-TAAACT-CTTTTGTTATTTAAATTATGTAACGTGTGAATCGAT-------------TGGTCATTACACTTTATAACTGACCATCGCATATGACCATTGTAGTCATGANTTATNNATTGATAAAC-ATATAAATAAAC-ATTTAAACAACTATACTGATTATA--ACAGGTAAGANTAACG-TAAGATCA---ATGNTATNTTTATCTTCATAATNTAGTTTNAACAATNGTTCAATATTNTTTGATAAGGGTGTANTTTNTGGATAATTGTA-T-AACGTATTCCATTTTANTACC-G-CGGCCATGT-------TTTACTTAATAT-----TCGATTATGTGATGACACTTT---ATGAATTGACCATCGTATATGACCATTGCAGTTATGAATTATACATTCATAAACTTATTAATATAATATCAATAGANAACCCGGCAACACTCTTTTAACCGGCACACACGAAGCCGTGGCGGTGGGGATCGAACCTACCNNGGTCCNATGCTTTNGATACATTTGTACCACCATACCATGCGNNACACAATTNNGTTTCGTNAGTGAGTGTTTTATTTCNTATTTTNTAAAAAAGAA-TTGATTTCCTCCTTAAAATGAAATCGTTT-TA-T-ATG-GCTATCGGAT---ACATCTATGTTTTGGCCCTGTTGTCTTGTATGTATTCGAGCATACGTTATCACAT-GG--ATCATTGACTTNTAGATATTTGTTAGTT-AACAATACCTCAGAATAATTGTTNATATNCATACNNAGT-AAAATCGTTTACTGTTCGNGCCATACAGCATANTTTTGTGTTGATACGCCGTNAAACCCCACGTCNNTTCACTGGACGATTGGCACTGA-TAA-CATACCCGTATTCATTGATCAAACGAAACGTGTCAAGTTG-NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTAACGGTACATTATAATCACATAATTATTCTTNTTA-TGTTTTGAAACGTGTACTTACTTACGTTGCTCTATT-TCGCACCTGCGTTTAGTTTCTATCGCGCTTTTTCGTAAAGGGCATACGAACAATACAAATCCGAACGACATGGTCAGGGCGAGCTGTTGTCAAGATTTCGATATACATTATCAGTTGTC-G-ATTTTAAAGTTGCTTAGACATATATTAAATTTGCTGGATCTCTACGATTAGAATCGCAATGGTGCTGTCTGCTGCTCGGTTCATTGTGCATGTGATGAAGGGTGTGGCTGCGACTGGTACTGCTACTGCTGTTGCTGCTGCTGTCTCCATGCGGGACGTTTGATGGACGATTTTGGT-GTCTTGCGGACGTTGTGGTTTCCTGGTAACGCTCTGCAGAACTGCTCCTGAGGTA----AAAACATTTTCAAATCAATTTTACATCATTGTTATGATCAGTAAGCAA-T-TTACATTACCCGGAGGCCAGGCCCGGTAAG
Reference ( family-220 ) : TTTAACATTTCACTACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGACACCAAAGTATGGGACGGAGA--GAGAGAGAGAGGTTAAATATTATATTTGTTTCACTTAAATAGATTAGCTGAAATAATACAATATAGCCATATTTAGTTTCAGGCACATGTATATCGTAGACAGTACTATCGTTTCATGTAACTAATATTTTACTAACCCCTGTGTTTCCCCTCTACCTCT-TAAACT-CTTTTGTTATTTAAATTATGTAACGTGTGAATCGAT-------------TGGTCATTACACTTTATAACTGACCATCGCATATGACCATTGTAGTCATGANTTATNNATTGATAAAC-ATATAAATAAAC-ATTTAAACAACTATACTGATTATA--ACAGGTAAGANTAACG-TAAGATCA---ATGNTATNTTTATCTTCATAATNTAGTTTNAACAATNGTTCAATATTNTTTGATAAGGGTGTANTTTNTGGATAATTGTA-T-AACGTATTCCATTTTANTACC-G-CGGCCATGT-------TTTACTTAATAT-----TCGATTATGTGATGACACTTT---ATGAATTGACCATCGTATATGACCATTGCAGTTATGAATTATACATTCATAAACTTATTAATATAATATCAATAGANAACCCGGCAACACTCTTTTAACCGGCACACACGAAGCCGTGGCGGTGGGGATCGAACCTACCNNGGTCCNATGCTTTNGATACATTTGTACCACCATACCATGCGNNACACAATTNNGTTTCGTNAGTGAGTGTTTTATTTCNTATTTTNTAAAAAAGAA-TTGATTTCCTCCTTAAAATGAAATCGTTT-TA-T-ATG-GCTATCGGAT---ACATCTATGTTTTGGCCCTGTTGTCTTGTATGTATTCGAGCATACGTTATCACAT-GG--ATCATTGACTTNTAGATATTTGTTAGTT-AACAATACCTCAGAATAATTGTTNATATNCATACNNAGT-AAAATCGTTTACTGTTCGNGCCATACAGCATANTTTTGTGTTGATACGCCGTNAAACCCCACGTCNNTTCACTGGACGATTGGCACTGA-TAA-CATACCCGTATTCATTGATCAAACGAAACGTGTCAAGTTG-NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTAACGGTACATTATAATCACATAATTATTCTTNTTA-TGTTTTGAAACGTGTACTTACTTACGTTGCTCTATT-TCGCACCTGCGTTTAGTTTCTATCGCGCTTTTTCGTAAAGGGCATACGAACAATACAAATCCGAACGACATGGTCAGGGCGAGCTGTTGTCAAGATTTCGATATACATTATCAGTTGTC-G-ATTTTAAAGTTGCTTAGACATATATTAAATTTGCTGGATCTCTACGATTAGAATCGCAATGGTGCTGTCTGCTGCTCGGTTCATTGTGCATGTGATGAAGGGTGTGGCTGCGACTGGTACTGCTACTGCTGTTGCTGCTGCTGTCTCCATGCGGGACGTTTGATGGACGATTTTGGT-GTCTTGCGGACGTTGTGGTTTCCTGGTAACGCTCTGCAGAACTGCTCCTGAGGTA----AAAACATTTTCAAATCAATTTTACATCATTGTTATGATCAGTAAGCAA-T-TTACATTACCCGGAGGCCAGGCCCGGTAAG
gi|1 : TTTAACATTTCACTACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGACACCAAAGTATGGGACGGAGA----GAGAGAGAGGTTAAATATTATATTTGTTTCACTTAAATAGATTAGCTGAAATAATACAATATAGCTATATTTAGTTTCAGGCATATGTATATCGTAGACAGTACTATCGTTTCATGTAACTAATATTTTACTAACCCCTGTGTTTTCCCTCTACCTCT-TAAACT-CTTTTGTTATTTAAATTATGTAACGTGTGAATCGAT-------------TGGTCATTACACTTTATAACTGACCATCGCATATGACCATTGTAGTCATGACTTATTAATTGATAAAC-ATATAAATAAAC-ATTTAAACAACTATACTGATTATA--CCAGGTAAGAATAACGCTATGATCAATTATGATATATTTATCTTCATAATTTAGTTTAAATAATTGTTCAATATTGTTTGATAAGGGTGTAATTTTTGGATAATTGTA-TAAACATATTCCATTTTAGTACTGG-CGGCCATGT-------TTTATTTTATAT-----TTGATTATGTGATGACAGTTTATCATGAATTGACCATCGTATATGACCATTGTAGTTATGAATTATACATTCATAAACTTATTAATATAATATCAATAGAGAACCCAGTAA-AC------AACCGGCA-ACACGAAGCCGTGGCGGTGGAGATCGAACCTACCGGGGTCCTATGCTTTTAATACATTTGTACCATCATATCATGCAGAACACAATTACGTTTCGTTAGTGAGTGTTTTATTTCTTATTTTCTAAAAAA-AA-TTGATTTCCTCCTTAAAATGAAATCATTTGTA-TAATG---TATTGGAT---AC-TCTATGTTTTGGCCCTGTTGTCTTGTATGTATTCAAGTATACGTTATCACAT-GG--ATCATTGACTTGTAGGTATTTGTTAGTTCAACAATACCTCAGAATAATTGTTGATATATATACATAGTAAAAATCGTTTACTGTTTACGCCAT--AACATATTTTTGTGTTGATACGCCGTAAAACCCCACGTCACTTCACTGGACGATTTGCACTGATTAA-CATACCCGTATCCATTGATCAAACGAAACANNNNNNNNNN-NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTAACGGTACATTATAATCACATAATTATTCTTGTTA-TGTTTTGGAACGTGTACTTACTTATGTTGCTCTATT-TCGCACCTGCGTTTAGTTTCTATCGCACTTTTTCGTAAAGGGCATACGAACAATACAAATCCGAACGACATGGTCAGGGTGAGCTGTTGTCAAGATTTCGATATACATTATCAGTTGTCTG-ATTTTAAAGTTGCTTAGACATTTATTAAATTTGCTGGATCTCTACGATTAGAATCGCAATGGTGCTGTCTGCTGCTCAGTTCATTGTGCATGTAATGAAAGGTGTGGCTACGACTGGTACTGCTACTGC---TGCTGCTGCTGTCTCCATGCGGGACGTTTGATGGACGATTTTGGT-GTCTTGCGGACGTTGTGGTTTCCTGGTAACGCTCTGCAGAACTGCTCCTGAGGTA----AAAACATTTTCAAATCAATTTAACATCATTGTTATGATCAGTAAGCAATT-TTACATTACCCGGAGGCCAGGCCCGGTAAG
gi|16 : TCTGTAAACCACTAATGTTATTTACATTATGTA-CGTGTGAATCGATGAGTTCCGATTGATGGTCAATACACTC-ATGATTGACCATTGTATATATCTATCTTATATATGAATTACGCATTCATAAACAATGTAAATAAACTATC---ACACGTGTACTTGTAATAAGAGAGGTAAGACTAA----AAGATAA---AT
gi|19 : tataAAGAAA-TTGATTTGCTCTTTAAAA-GAAA-CG-------T-GTG-GCT-TCGGATGTCATATCCATCTATTGA-CCTACTGTCT------TATCCGAGCATATGCTA-CACAT-AG--AACATTGG-TTTTAGAT
gi|2 : AGTTATG-T-AACGTA---CATTTTATTAAC------CCATGTGTTTCCCTTTACGTAACGTGTGAATCGATTG-GTCATTACACTTT---A-AAACTGACCATCGCATATGACCATTGCAGTTATGAATTATACATTGATAGACATA-TAAT-TAA
gi|2 : gtactaaTTACGTAACGTGTGAATCGAT-------------TGGTCATTACACTTTAAAACTGACCATCGCATATGACCATTGCAGTTATGAATTATACATTGATAGAC-ATATAATTAAAC-ATTGGAACAACTATACTGATTAAA--ACAGGTAAGAGTCACGATAAGATCA---ATGCTATCTTTATCTTCATAATATA-TTTCAACAATGATTCAATATTTTTTGATAAGGATGTATTTTATGGATAATTGTATT-AACGTATTCCATTTGACTACC-GTCGGCCATGT-------TTT--TTAATAT-----TTGATTATATGATGACACTTT---AT-AATTGACCATGGTATATGACCATTGCAGATATGAATTATACATTCATGAGCTTATTAATATAATA--AATAAACAA-CTGGCAACACTCTTTTAATTAATACACACGAAGTCGTGACGGTGGGGATCGAACCTACCCTGGTTCAATGCTTTAGATATATTTATACCACCATACCATGCGTTACACAATTTAGTTTTGTGAGTGAGTGTTTTATTTCATATTTTGTAAAAAAGAACTTGATTTCCTTCTAAAAATGAAATCATTTCTATT-ATGTGCTATTGGAT---A-ATTTATGTTTGAGCCCTGTTGTCTTGTATATATTCAAGCATACGATATCACATCGGTTATAATTGACTTCTTGATATTTGTTAGTT-AACAATACCTCAGAATAATTATTCATATTCATACCGAGT-AAAATCGTTTACTGTTCGGGTCATACAGCATAGTTTTGTATTAATACGCCGTCAAACCCCACATCCATTCACTGGATGATTGGC--------A-CATACCCATATTCATAGATCAAACGGTACGTGTCAAGTTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAATCCC---ATTATTCTTATTACTGTTTTGAAACGTGTATTTGTTTACGTTGCTCTATTATCACAACTGAGTTTAATTTCTCTCGCGCCTTTTTGTAA---GCATACGAACAAAACAAATCCAAACGATATGGCCAGAGCGAGCTGTTGTCAAGTTTTCGATACACAC-----GTAATC---ATT---AAGTTGCTTAGACATATTTCACTTTTGCTAGATCTCTACGACTAGAATCACCATGGTGCTGTCTGTTGTTCGGTTAATTGTGCATGTGGTGAAGGGTGTGGCTGCTAATGGTACTGCTACTGCTGTTGCTGCTGCTGTCTCCATGTGGGACGTTTGGTGGATGGTTTTCGTCGTCTTGTGGACGTTGTGGTGTCCTGTTAACGCCCAGCAGAACTGCTCCTGAGGTGAGTTAAAACATGTTCAAATCATTTTTATATCAGTATTATTATCAGTTAGCAA-TATTACATTACTCGacattggaacaactatactgattaaaacaggtaagagtcacgataagatcaatgctatctttatcttcataatatatttcaacaatgattcaatattttttgataaggatgtattttatggataattgtattaacgtattccatttgactaccgtcggccatgttttttaatatttgattatatgatgacactttataattgaccatggtatatgaccattgcagatatgaattatacattcatgagcttattaatataataaataaacaactggcaacactcttttaattaatacacacgaagtcgtgacggtggggatcgaacctaccctggttcaatgctttagatatatttataccaccataccatgcgttacacaatttagttttgtgagtgagtgttttatttcatattttgtaaaaaagaacttgatttccttctaaaaatgaaatcatttctattatgtgctattggataatttatgtttgagccctgttgtcttgtatatattcaagcatacgatatcacatcggttataattgacttcttgatatttgttagttaacaatacctcagaataattattcatattcataccgagtaaaatcgtttactgttcgggtcatacagcatagttttgtattaatacgccgtcaaaccccacatccattcactggatgattggcacatacccatattcatagatcaaacggtacgtgtcaagttgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaatcccattattcttattactgttttgaaacgtgtatttgtttacgttgctctattatcacaactgagtttaatttctctcgcgcctttttgtaagcatacgaacaaaacaaatccaaacgatatggccagagcgagctgttgtcaagttttcgatacacacgtaatcattaagttgcttagacatatttcacttttgctagatctctacgactagaatcaccatggtgctgtctgttgttcggttaattgtgcatgtggtgaagggtgtggctgctaatggtactgctactgctgttgctgctgctgtctccatgtgggacgtttggtggatggttttcgtcgtcttgtggacgttgtggtgtcctgttaacgcccagcagaactgctcctgaggtgagttaaaacatgttcaaatcatttttatatcagtattattatcagttagcaatattacattactcg
gi|3 : gtactaaagttatgtaacgtacattttattaacccatgtgtttccctTACGTTATCACAT-GG--ATCNNNNNNNNNNNNNNNNNNNNNNNNN-NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGACGATTGGCACTGA-TAAACATACCCGTATTCATTGATCAAACGAAACANNNNNNNNNN-NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTAACGGTACATTATAATCACATAATTATTCTTTTTA-TGTTTTGAAACGTGTACTTACTTATGTTGCTCTATT-TCGCACCTGCGTTTAGTTTCTATCGCATTTTTTGGTAAAGGGCATACGAACAATACAAATCCGAACGACATGGTCAGGGTGAGCTGTTGTCAAGATTTCGATATACATTATCAGTTGTC-GGATTTTAAAGTTGCTTAGACATATACTTAATTTGCTGGATCTCTACGATTAGAATCGCAATGGTGCTGTCTGCTGCTCAGTTCATTGTGCATGTGATGAAGGGTGTGGCTGCGACTGGTACTGCTACTGCTGTTGCTGCTGCTGTCTCCATGCGGGACGTTTGATGGACGATTTTGGT-GTCTTGCGGACGTTGTGGTTTCCTGGTAACGCTCTGCAGAACTGCTCTTGAGGTA----AAAACATTTTCAAATCAATTTTTCATCATTGTTATGATCAGTAAGCAA-T-TTACATTACCCGGAGGCCAGGCCCGGTAAG
gi|7 : TTTAACATTTCACTACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGACACCAAAGTATGGGACGGAGAGA--GAGAGAGAGGTTAAATATTATATTTGTTTCACTTAAATAGATTAGCTGAAATAATACAATATAGCCATATTTAGTTTCAGGCACATGTATATCGTAGACAGTACTATCGTTTCATGTAACTAATATTTTACTAACCCCTGTGTTTCCCCTCTACCTCT-TAAACT-CTTTTGTTATTTAAATTATGTAACGTGTGAATCGAT-------------TGGTCATTACACTTTATAACTGACCATCGCATATGACCATTGTAGTCATGACTTATTAATTGATAAAC-ATATAAATAAAC-ATTTAAACAACnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnattagtagttggatgggtgggtggactgaagggcgattgtgctcttgttgaacgggcggacggatgtaattccatgtgaacggtggtacaggcgagtgggcggacgcacggacagaatatacattttcaagtgcatgtttgtaatggcattaggcattttatttgacctgtatttataggcgtagcatagtttcagttaatgtgggagaggcaacctggggagtgggagattatgagggacatctctttcgccagttggcctctccagaaaatgtcgatactttgaacaccaaaggctgcgtcttagtaagtgtttatgataaattatgatttatatttctccgcaatatttttttagttataaacgtttt
blockSeqs : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN GA G A A GAGTTCCGATTGA T A GC A T GG AG C CGA . C C A . C G T T A TT T T GT GTTTCCC AC GTGAA T AA T A . C . C TCTTTT C CT A A TT TA G A G A C T T ATTTCTATT TG A GTCATA C T A C T C TT C T . C T CG . G AC G C CA ACTGATAAA NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN A A C A T A T GG T T C AGTT TA
blockSeqs : . . A . T A AC . . TA . G . . T . C . . . . . AT . . G . . . GT G . AA . . . A T . . N C . N N NN . N NN N N NN A NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN . T . . G . . . . T . . T
blockSeqs : . . . C TA . . . T . . . . N
blockSeqCons :
originalCons : TTTAACATTTCACTACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGACACCAAAGTATGGGACGGAGAGA--GAGAGAGAGGTTAAATATTATATTTGTTTCACTTAAATAGATTAGCTGAAATAATACAATATAGCCATATTTAGTTTCAGGCACATGTATATCGTAGACAGTACTATCGTTTCATGTAACTAATATTTTACTAACCCCTGTGTTTCCCCTCTACCTCT-TAAACT-CTTTTGTTATTTAAATTATGTAACGTGTGAATCGAT-------------TGGTCATTACACTTTATAACTGACCATCGCATATGACCATTGTAGTCATGANTTATNNATTGATAAAC-ATATAAATAAAC-ATTTAAACAACTATACTGATTATA--ACAGGTAAGANTAACG-TAAGATCA---ATGNTATNTTTATCTTCATAATNTAGTTTNAACAATNGTTCAATATTNTTTGATAAGGGTGTANTTTNTGGATAATTGTA-T-AACGTATTCCATTTTANTACC-G-CGGCCATGT-------TTTACTTAATAT-----TCGATTATGTGATGACACTTT---ATGAATTGACCATCGTATATGACCATTGCAGTTATGAATTATACATTCATAAACTTATTAATATAATATCAATAGANAACCCGGCAACACTCTTTTAACCGGCACACACGAAGCCGTGGCGGTGGGGATCGAACCTACCNNGGTCCNATGCTTTNGATACATTTGTACCACCATACCATGCGNNACACAATTNNGTTTCGTNAGTGAGTGTTTTATTTCNTATTTTNTAAAAAAGAA-TTGATTTCCTCCTTAAAATGAAATCGTTT-TA-T-ATG-GCTATCGGAT---ACATCTATGTTTTGGCCCTGTTGTCTTGTATGTATTCGAGCATACGTTATCACAT-GG--ATCATTGACTTNTAGATATTTGTTAGTT-AACAATACCTCAGAATAATTGTTNATATNCATACNNAGT-AAAATCGTTTACTGTTCGNGCCATACAGCATANTTTTGTGTTGATACGCCGTNAAACCCCACGTCNNTTCACTGGACGATTGGCACTGA-TAA-CATACCCGTATTCATTGATCAAACGAAACGTGTCAAGTTG-NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTAACGGTACATTATAATCACATAATTATTCTTNTTA-TGTTTTGAAACGTGTACTTACTTACGTTGCTCTATT-TCGCACCTGCGTTTAGTTTCTATCGCGCTTTTTCGTAAAGGGCATACGAACAATACAAATCCGAACGACATGGTCAGGGCGAGCTGTTGTCAAGATTTCGATATACATTATCAGTTGTC-G-ATTTTAAAGTTGCTTAGACATATATTAAATTTGCTGGATCTCTACGATTAGAATCGCAATGGTGCTGTCTGCTGCTCGGTTCATTGTGCATGTGATGAAGGGTGTGGCTGCGACTGGTACTGCTACTGCTGTTGCTGCTGCTGTCTCCATGCGGGACGTTTGATGGACGATTTTGGT-GTCTTGCGGACGTTGTGGTTTCCTGGTAACGCTCTGCAGAACTGCTCCTGAGGTA----AAAACATTTTCAAATCAATTTTACATCATTGTTATGATCAGTAAGCAA-T-TTACATTACCCGGAGGCCAGGCCCGGTAAG
finalCons : TTTAACATTTCACTACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGACACCAAAGTATGGGACGGAGAGA--GAGAGAGAGGTTAAATATTATATTTGTTTCACTTAAATAGATTAGCTGAAATAATACAATATAGCCATATTTAGTTTCAGGCACATGTATATCGTAGACAGTACTATCGTTTCATGTAACTAATATTTTACTAACCCCTGTGTTTCCCCTCTACCTCT-TAAACT-CTTTTGTTATTTAAATTATGTAACGTGTGAATCGAT-------------TGGTCATTACACTTTATAACTGACCATCGCATATGACCATTGTAGTCATGANTTATNNATTGATAAAC-ATATAAATAAAC-ATTTAAACAACTATACTGATTATA--ACAGGTAAGANTAACG-TAAGATCA---ATGNTATNTTTATCTTCATAATNTAGTTTNAACAATNGTTCAATATTNTTTGATAAGGGTGTANTTTNTGGATAATTGTA-T-AACGTATTCCATTTTANTACC-G-CGGCCATGT-------TTTACTTAATAT-----TCGATTATGTGATGACACTTT---ATGAATTGACCATCGTATATGACCATTGCAGTTATGAATTATACATTCATAAACTTATTAATATAATATCAATAGANAACCCGGCAACACTCTTTTAACCGGCACACACGAAGCCGTGGCGGTGGGGATCGAACCTACCNNGGTCCNATGCTTTNGATACATTTGTACCACCATACCATGCGNNACACAATTNNGTTTCGTNAGTGAGTGTTTTATTTCNTATTTTNTAAAAAAGAA-TTGATTTCCTCCTTAAAATGAAATCGTTT-TA-T-ATG-GCTATCGGAT---ACATCTATGTTTTGGCCCTGTTGTCTTGTATGTATTCGAGCATACGTTATCACAT-GG--ATCATTGACTTNTAGATATTTGTTAGTT-AACAATACCTCAGAATAATTGTTNATATNCATACNNAGT-AAAATCGTTTACTGTTCGNGCCATACAGCATANTTTTGTGTTGATACGCCGTNAAACCCCACGTCNNTTCACTGGACGATTGGCACTGA-TAA-CATACCCGTATTCATTGATCAAACGAAACGTGTCAAGTTG-NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTAACGGTACATTATAATCACATAATTATTCTTNTTA-TGTTTTGAAACGTGTACTTACTTACGTTGCTCTATT-TCGCACCTGCGTTTAGTTTCTATCGCGCTTTTTCGTAAAGGGCATACGAACAATACAAATCCGAACGACATGGTCAGGGCGAGCTGTTGTCAAGATTTCGATATACATTATCAGTTGTC-G-ATTTTAAAGTTGCTTAGACATATATTAAATTTGCTGGATCTCTACGATTAGAATCGCAATGGTGCTGTCTGCTGCTCGGTTCATTGTGCATGTGATGAAGGGTGTGGCTGCGACTGGTACTGCTACTGCTGTTGCTGCTGCTGTCTCCATGCGGGACGTTTGATGGACGATTTTGGT-GTCTTGCGGACGTTGTGGTTTCCTGGTAACGCTCTGCAGAACTGCTCCTGAGGTA----AAAACATTTTCAAATCAATTTTACATCATTGTTATGATCAGTAAGCAA-T-TTACATTACCCGGAGGCCAGGCCCGGTAAG
19 sequences could not be aligned to this reference sequence:
Unaligned ( gi|4 ): CTTTAGAAATTCCATTTGAACGTAGTGAATTATAGGCGTAGGATCGTTTCTGTAAATGGAAGATGGGTAACCTAGGGAGTGAGATGCTGCACATTTAAGTGAGTGTTAAGGATAAATTATGATTGATATTTACTCCAAAGTATTTTGTGAGTTTAAAACATTTTTTGTGTAAAACAAACGGTAATATGTATTAAAAAATAACATTCACCTAGTATTTAAACCGGTTCGTCAGCACATCATGCACTGGGAGCCTAGGCATAATGATGAAAGAGTGTGGGAGAGTAACATGTTAATAATATACGTTTTTATTTAACACACGTACGCAAGTATCGCACGCACACATGCACAGGCGTTCCATACCCGAAAAAAATACACACACAAAACTGAACAAAATATGCAGGAAACCAGGGCACATGGGAAAATGCGACAACCTCTCGCACTGATTTGGGTATGGGATGCCTCGCTCAGAATGTGTTATATATTCTTAACCTATTGCTAGATACAAATAAGATATTAGGATGAGAAAACGGCTGTTACTTAAATAATTTAATATATTGTGACTTTAAAAGTATTAAATAAACAGACTGTCACGTAAAAACTTAGAAAAAGTTATATGATGTAACAAAGAAACCCCACCCCCTGATTTTATACTCAAGTCATGGAAGATGGTTTCATGCTGGCGGGGACACGGGAGATCTCCTCCGAAATTTTTATGACTAAAAAATAAATGTTCATTTTATTTAGTTTTAGAGAAAATAGATGTTAATATTTATTCTATTTTGTTATTTTTAAATGCTTACAAATTAACATACAATACTCTTAGAAAATATACAATCAGATGTATTTTAAAGATAAACCGAGTTTCAAACCCGATACCTCTTCCATTACAAGACAAAACGTGAAGGATAGTGTTGGACGAGGCTGGTGGCGATATTGGGGACTCCCTCGGATTTTTTTTTGTATTTAAACACCAAAGGCCTGACTGAGTGAGAATTTAAGACAAATATATGGATGGTGAATCAGGAATTTGGTATTATGTGACGATAAACATTGCTATTAAAATATTGGGGGAGGGCAAAGTATATGCATGCTGGCCCCCAACATGAACATTGATGGGGTTGGGTAGAGGCACTCCGACTGCTCCCGGCTCCTACACCTATAGTAATAAAAAAACGGATCACAC
Unaligned ( gi|5 ): TTTAAAAATGAGCGTCCAATGGGTTTTAAACAACATGCATGACAACATGACAAAACAAAACGTGAGGAAGAATATGAAGAGGGCTGGTGGCAGCACTGGATATTAACCTGAAAAAATATGATATTTAAAATAACAAATCCAGCATTCTAGTGAGTTTTGAGGGGTAAAAAATATGTTGTCATTTACTCCATATGTTTGATATCGTGTGACCTTTAGACATACAAAATATTGGGGTGGGGGACAAAGTTTATGCAGGACCCCCAACCCGAAATGGGAGGGAGTTCCTCTGGCCTCCGGCTCCTACGCCTTTGTTACTCCAGTGCGGGAGAGGATGTCCCTTTGCTGGTTGGGGTATGGGCGGCCTCGTATGGAAAATCTTTATATATTAAAAATTAAATACTGCATGTAGGTAACAATAAGGTGGAAAAAGTTGTTGTTTACTCCAATATTTTTTGTGACAATTAAACGGTTTATTAAGAAAAAATATGTATTAAAAATGAGCGTCCACTGGATTTAAACCTCATGTATGACAACTGTGAGAAAGAATACGAAGAGGGCTTGCGATGGTACGGGGTCTTAACCTGGAAAATTTAGATATATTAAAACAAAAAATGCTGCATTTGTGGGGGGGGGGGGATAAAATATGCTCTATTATTACCCCAAAATTTTGGTATTTTGTGACCTTTAAACATTTTTTATCAAAGTATTGGGCGAGGGTGCATAGTATAAGCTGGCCAACCTGAGTACTGTAGACGGGGACGGCTCCCATTGCCTCGTCCAGGTCGGCTCCTACGCCT
Unaligned ( gi|6 ): ATACCCAATAGGAACGATATTCGTTGCCCTTAGGGGATTCTCTGCTTATAGGGGTATGGGGACTTCTCTCCGAAAGTTTGGATATCTTAATAAGCAAATACTGCATTCAAGTTAGTTTAAAGGGGAAACGATTCTTAATTACATCAATGTTGGAGGGGGTGTCCCCTGCCGGTGGGGCTACTGGCCTATCCAGGAAAAAATAGATCAAATACAAAAAATATATAAGTTGTATTAAGATATGAGCATCCAAAATGTTTAAATCACTTGCATGACAAAACCTTAGGAAGTGAGGAAGAGTGTGAATAGTACTCGTGGCGATACGGGGTTTTAAACCAGACTTTTTTATATTTAGAACAACAAATGTTGCATTCTAGTGATTGTTTAGCTTAAAAATATGTTGTCATTTACTCCAGATGTTTGGTTTTGGTTTTTGTGACACTTAGGCATTTTTATCAAAATATTAGGGGGATTGGGATGGGCAAAGTATAAACTGGCCCCAAACCTGAACATTGGTGGAGCGGCCCCTTCTGGTCCCCGTGGCTCCTACGCA
Unaligned ( gi|8 ): TATATATATATTGTCAGAAATGACACTATCAAGCTCATGTTAGAAATTGCATTAGAAATTTCATTTCAAATGTATTACATGTATTATAGGCGTATTATCGTTTCAATAATTGGAGGTGGGCAACCACGGGAGCGGGAGGTTGTGAGGGACACCTCCCCTCCGGTTGGTTGTAATACAAAGGCTTCCCTAAGAATATTTCGATATCTTAAACATTAAAAGCTGTGTTTTAATGAGTATTTAGTGAGTTTATTTACTTCCCAATAGTTTATATAGTGAATTTTAAACGTTTTATGAAGTAAAAACGATAATATGTATAAAAAAACGATCTTTAACCGGACTTAAATAACGGTACCTCAAGCACTGGAGCCACAAATGGTAAGATAGGGTTGATGGGGAAAATTTATTACGAAACATTTCAGTA
Unaligned ( gi|9 ): ATATAATATAAATGACATTTCGATTACAAAGTGAATTGTACAAATTCCGACAAACGGAGTATGTTTTGTTCACGGCCGTAGATGAGTTTCAATTATTGAGGAGGGGAGGGCATTTTGGTGTATCCCCTCCCGTTGTTGATGGGGGATATCCTTGAACATTTTGATATATTCAACACCAAATGCTGCATAATAGGAAGATGTTATGAATAATTTTAGGAGTTTTATTTACTCATGGGACCAATATTGTGTGACTTAAATGTTTTATTAAGT
Unaligned ( gi|10 ): ACGGTGAGGCAAAAGGTTAGGAAAAGCGTGTAGGTATGCTGGTAGCATGTGGTGACCTCCTTAGGAAATTGTGATATTTAAAATACCAAATGCTGCATTCTAATGAGCTGTAAGGATAAAATAATATGCTTGTCATTTATTCCAGATGATTGTTTTTTTTTTTCACTTTTAATTATTGTTATTAAGATAAGGGATATATATGCTGCCCCTCCTTAACATTAGAAGGGGGGCCAACCCAACTGCTACCTCCCCTGGCTCCTATGCTT
Unaligned ( gi|11 ): TTTCCTCAGAAAGAATACAAGACTTTATTTAAAAAAGACGAAGGTCCCCGGGATTTAAAACACGCACGCAAGTTGCGATCCAAAACGTGACGGAGAGTGTAGAAGGCTGGCGATAGTGGGGCGCCCCCTGAAATATTTGATGTTTGGAACACCAAATTTTGCATTCTAGTGATTTGTTTAGTGATTATCGTTTACTTCAGATGTTTTATATTTTGCGACGTTTTTTTTTTTATATAAAACTATCTGGGTGG
Unaligned ( gi|12 ): GAGTGTATGAGGAGAGAGTGTATGAGGAGAGAATGTTGGATCGAGCTAATGGCGGCACACAACCAAGCGGAATTTTTTTATATTTAAAACAACAAATGCTGCATTATAGTGAGTTGTTAGGGTAAAGAATGAGGTGTTGTCATTAAGGTGTTTGGTATATTGTGACTTTAAAACATTTTTATCAAAATATTGGGGTGGGGTGGCAACTTGAACATTGGTGGGAGGGGATAGGGCGC
Unaligned ( gi|13 ): AATATTGGGGGTAGGAGCAACGTGTATGCTCCCCCATCTTAACATTGAAGTGGTTGGGTGGATCCCCAACCACACACGAGTTTTTCGCTTACGGTAATAAATATTGATCACAGAGGTTTTCATAAATTGGAATGAAGGCCAATGTAATGCATAACAGGTCATATTTGACAACCTGTACTTTTGGTGTAAAACAACTCACTAGTCATATGCATGAGCAACTGCGTAGAACT
Unaligned ( gi|14 ): GTTTTAAACCACATGAATGACAAGCCAAAATGTAAGGAAGAGTGTGAAGGGGTGGGATCCGATACGGGGTGTTAACCTGGACTTTTTTATATTTAAAACAAAAAATGCTGCATTCTAGTGATTTTAGGGTAAAAATATGTTGTCATTTACTCCAGATGTTTGGTATTTTGTGACCTTTTTACATTTTTATAAAAAAAATGGGGGGGGGGGGCAAAGTATTTGC
Unaligned ( gi|15 ): TATTTAGAAACAATAAATGTTGCTTTTAATGAGCTTTTAGGATAACACTATGGATTGTCATTTATTTCAGATGTTTGATATTTTGTTACATTTAAACATTTTTATTAAAATATGGCGTTGGGGCGGGGTACAAAGTATGCCATATTAGCTGGCCGCCTAACCCCTAACCCGTCATTGAACATTAGTGGGGCCCTGAA
Unaligned ( gi|17 ): AGAAAAGCTTAGACAAAAAAGTATGAGATATATCAAAAAGAAACGAACCTCCACCGGACGTGGGGGAGACTGTGAAAAATTGTATTATCGCTGGTCGGGTTACGGGAGGTCGCCCCCGTAAATTTGTGATATTTGTACATTCTATTTAGTTTTAGGGGAAATGGTTGTTATTCAA
Unaligned ( gi|18 ): ATGGTAAAATATTGGAAGGGGGGTGCAAAGTATATACTAGGCTCCTCCAACCTGAAGAAGTGGGGGTGGGGTTGGGGGCGGACCCCATCCCTGGCTCCTACGCTTATGGTATATAC
Unaligned ( gi|20 ): TTAAAGGCAATTCAATACATAACATGCTATTATATAATAATATTTATCACAGCATATTCTTTTGATGTACTTTTGGTGTAGAAAAATCTCATTTATTAGATGCA
Unaligned ( gi|21 ): CAAAAATGCTGCAATCTAGCTATAGGCTAAAGTTAAGTTTTATTAATGTTTGGTATTTTGTGTTGTTTTTTTTTTTAAATGGGGGGTGGGGGTAATGTCTATA
Unaligned ( gi|22 ): TACACCGGCCTTCAACATGAACATTGATGGAGTTAGGTGAAGGCGCACCAACTGCTTCTGGTCCCACGCCTATGGTAATATAAGATGGACCACAGA
Unaligned ( gi|23 ): GCATTTTTATTAATCTATTAGGGACAAGGCAATATATATACTGGCCTACCCATCCTGAACATTAGAATAGGGGTGCCGGTCCCCGACTCT
Unaligned ( gi|24 ): TTGAGTAAAATACTGGGGTGTGGGGTGGGTCAAAATATATGCAGGCCCCTCCAACCTGAACAG
Unaligned ( gi|25 ): CCAGATGTTTGATACTTTGTCACTTTTAACATCTTTATTGAAATATTGTGT
Alignments
lowQualScore : 11111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 7777 1 1 5555555555555 1 1 11 11 333 222 1 111 333 4444444 11 33333 333333 11 1 1 333333 1 1 1 4444444444 22 333333 1 11 1 1 11 1111111111 666666666666666666666666666666666666666666666666 1 1 333 1 2222 111
lowQualScore : 44444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444 0000 3 3 3 5555555555555 3 1 22 0 0 00 88 1 111 333 1 1 1 5 1 1 1 1 1 777 7 1 333 3333333 11 33333 0 7 333333 7 7 88 1 5 5 000000 5 22 1 1 22 22 1 1 1 2 3 7 7 8888888888 00 7 0 333333 6 7 3 0 1 3 0 33 5 1 3 1 1 22 3 1 22 1 1 22 7777777777 0 000000000000000000000000000000000000000000000000 7 1 3 0 3 0 3 7 0 7 333 7 0 7 3 8888 777
lowQualScore : ........................................................................................................ .... . . . ............. . . .. . . .. .. . ... ... . . . . . . . . . ... . . ... ....... .. ..... . . ...... . . .. . . . ...... . .. . . .. .. . . . . . . . .......... .. . . ...... . . . . . . . .. . . . . . .. . . .. . . .. .......... . ................................................ . . . . . . . . . . ... . . . . .... ...
lowQualScore : 00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 0000 3 3 2 0000000000000 2 0 00 0 0 00 33 0 777 333 0 0 0 0 0 0 0 0 0 777 3 0 333 3333333 00 33333 7 3 777777 3 3 00 0 0 0 000000 0 00 0 0 00 00 0 0 0 0 3 3 3 3333333333 00 3 7 777777 7 3 7 7 2 2 0 88 2 0 3 0 0 00 3 0 77 0 0 00 7777777777 7 333333333333333333333333333333333333333333333333 3 0 3 7 3 7 7 3 7 3 333 3 7 3 3 3333 777
consensus : TTTAACATTTCACTACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGACACCAAAGTATGGGACGGAGAGA--GAGAGAGAGGTTAAATATTATATTTGTTTCACTTAAATAGATTAGCTGAAATAATACAATATAGCCATATTTAGTTTCAGGCACATGTATATCGTAGACAGTACTATCGTTTCATGTAACTAATATTTTACTAACCCCTGTGTTTCCCCTCTACCTCT-TAAACT-CTTTTGTTATTTAAATTATGTAACGTGTGAATCGAT-------------TGGTCATTACACTTTATAACTGACCATCGCATATGACCATTGTAGTCATGANTTATNNATTGATAAAC-ATATAAATAAAC-ATTTAAACAACTATACTGATTATA--ACAGGTAAGANTAACG-TAAGATCA---ATGNTATNTTTATCTTCATAATNTAGTTTNAACAATNGTTCAATATTNTTTGATAAGGGTGTANTTTNTGGATAATTGTA-T-AACGTATTCCATTTTANTACC-G-CGGCCATGT-------TTTACTTAATAT-----TCGATTATGTGATGACACTTT---ATGAATTGACCATCGTATATGACCATTGCAGTTATGAATTATACATTCATAAACTTATTAATATAATATCAATAGANAACCCGGCAACACTCTTTTAACCGGCACACACGAAGCCGTGGCGGTGGGGATCGAACCTACCNNGGTCCNATGCTTTNGATACATTTGTACCACCATACCATGCGNNACACAATTNNGTTTCGTNAGTGAGTGTTTTATTTCNTATTTTNTAAAAAAGAA-TTGATTTCCTCCTTAAAATGAAATCGTTT-TA-T-ATG-GCTATCGGAT---ACATCTATGTTTTGGCCCTGTTGTCTTGTATGTATTCGAGCATACGTTATCACAT-GG--ATCATTGACTTNTAGATATTTGTTAGTT-AACAATACCTCAGAATAATTGTTNATATNCATACNNAGT-AAAATCGTTTACTGTTCGNGCCATACAGCATANTTTTGTGTTGATACGCCGTNAAACCCCACGTCNNTTCACTGGACGATTGGCACTGA-TAA-CATACCCGTATTCATTGATCAAACGAAACGTGTCAAGTTG-NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTAACGGTACATTATAATCACATAATTATTCTTNTTA-TGTTTTGAAACGTGTACTTACTTACGTTGCTCTATT-TCGCACCTGCGTTTAGTTTCTATCGCGCTTTTTCGTAAAGGGCATACGAACAATACAAATCCGAACGACATGGTCAGGGCGAGCTGTTGTCAAGATTTCGATATACATTATCAGTTGTC-G-ATTTTAAAGTTGCTTAGACATATATTAAATTTGCTGGATCTCTACGATTAGAATCGCAATGGTGCTGTCTGCTGCTCGGTTCATTGTGCATGTGATGAAGGGTGTGGCTGCGACTGGTACTGCTACTGCTGTTGCTGCTGCTGTCTCCATGCGGGACGTTTGATGGACGATTTTGGT-GTCTTGCGGACGTTGTGGTTTCCTGGTAACGCTCTGCAGAACTGCTCCTGAGGTA----AAAACATTTTCAAATCAATTTTACATCATTGTTATGATCAGTAAGCAA-T-TTACATTACCCGGAGGCCAGGCCCGGTAAG
Reference ( family-220 ) : TTTAACATTTCACTACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGACACCAAAGTATGGGACGGAGA--GAGAGAGAGAGGTTAAATATTATATTTGTTTCACTTAAATAGATTAGCTGAAATAATACAATATAGCCATATTTAGTTTCAGGCACATGTATATCGTAGACAGTACTATCGTTTCATGTAACTAATATTTTACTAACCCCTGTGTTTCCCCTCTACCTCT-TAAACT-CTTTTGTTATTTAAATTATGTAACGTGTGAATCGAT-------------TGGTCATTACACTTTATAACTGACCATCGCATATGACCATTGTAGTCATGANTTATNNATTGATAAAC-ATATAAATAAAC-ATTTAAACAACTATACTGATTATA--ACAGGTAAGANTAACG-TAAGATCA---ATGNTATNTTTATCTTCATAATNTAGTTTNAACAATNGTTCAATATTNTTTGATAAGGGTGTANTTTNTGGATAATTGTA-T-AACGTATTCCATTTTANTACC-G-CGGCCATGT-------TTTACTTAATAT-----TCGATTATGTGATGACACTTT---ATGAATTGACCATCGTATATGACCATTGCAGTTATGAATTATACATTCATAAACTTATTAATATAATATCAATAGANAACCCGGCAACACTCTTTTAACCGGCACACACGAAGCCGTGGCGGTGGGGATCGAACCTACCNNGGTCCNATGCTTTNGATACATTTGTACCACCATACCATGCGNNACACAATTNNGTTTCGTNAGTGAGTGTTTTATTTCNTATTTTNTAAAAAAGAA-TTGATTTCCTCCTTAAAATGAAATCGTTT-TA-T-ATG-GCTATCGGAT---ACATCTATGTTTTGGCCCTGTTGTCTTGTATGTATTCGAGCATACGTTATCACAT-GG--ATCATTGACTTNTAGATATTTGTTAGTT-AACAATACCTCAGAATAATTGTTNATATNCATACNNAGT-AAAATCGTTTACTGTTCGNGCCATACAGCATANTTTTGTGTTGATACGCCGTNAAACCCCACGTCNNTTCACTGGACGATTGGCACTGA-TAA-CATACCCGTATTCATTGATCAAACGAAACGTGTCAAGTTG-NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTAACGGTACATTATAATCACATAATTATTCTTNTTA-TGTTTTGAAACGTGTACTTACTTACGTTGCTCTATT-TCGCACCTGCGTTTAGTTTCTATCGCGCTTTTTCGTAAAGGGCATACGAACAATACAAATCCGAACGACATGGTCAGGGCGAGCTGTTGTCAAGATTTCGATATACATTATCAGTTGTC-G-ATTTTAAAGTTGCTTAGACATATATTAAATTTGCTGGATCTCTACGATTAGAATCGCAATGGTGCTGTCTGCTGCTCGGTTCATTGTGCATGTGATGAAGGGTGTGGCTGCGACTGGTACTGCTACTGCTGTTGCTGCTGCTGTCTCCATGCGGGACGTTTGATGGACGATTTTGGT-GTCTTGCGGACGTTGTGGTTTCCTGGTAACGCTCTGCAGAACTGCTCCTGAGGTA----AAAACATTTTCAAATCAATTTTACATCATTGTTATGATCAGTAAGCAA-T-TTACATTACCCGGAGGCCAGGCCCGGTAAG
gi|1 : TTTAACATTTCACTACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGACACCAAAGTATGGGACGGAGA----GAGAGAGAGGTTAAATATTATATTTGTTTCACTTAAATAGATTAGCTGAAATAATACAATATAGCTATATTTAGTTTCAGGCATATGTATATCGTAGACAGTACTATCGTTTCATGTAACTAATATTTTACTAACCCCTGTGTTTTCCCTCTACCTCT-TAAACT-CTTTTGTTATTTAAATTATGTAACGTGTGAATCGAT-------------TGGTCATTACACTTTATAACTGACCATCGCATATGACCATTGTAGTCATGACTTATTAATTGATAAAC-ATATAAATAAAC-ATTTAAACAACTATACTGATTATA--CCAGGTAAGAATAACGCTATGATCAATTATGATATATTTATCTTCATAATTTAGTTTAAATAATTGTTCAATATTGTTTGATAAGGGTGTAATTTTTGGATAATTGTA-TAAACATATTCCATTTTAGTACTGG-CGGCCATGT-------TTTATTTTATAT-----TTGATTATGTGATGACAGTTTATCATGAATTGACCATCGTATATGACCATTGTAGTTATGAATTATACATTCATAAACTTATTAATATAATATCAATAGAGAACCCAGTAA-AC------AACCGGCA-ACACGAAGCCGTGGCGGTGGAGATCGAACCTACCGGGGTCCTATGCTTTTAATACATTTGTACCATCATATCATGCAGAACACAATTACGTTTCGTTAGTGAGTGTTTTATTTCTTATTTTCTAAAAAA-AA-TTGATTTCCTCCTTAAAATGAAATCATTTGTA-TAATG---TATTGGAT---AC-TCTATGTTTTGGCCCTGTTGTCTTGTATGTATTCAAGTATACGTTATCACAT-GG--ATCATTGACTTGTAGGTATTTGTTAGTTCAACAATACCTCAGAATAATTGTTGATATATATACATAGTAAAAATCGTTTACTGTTTACGCCAT--AACATATTTTTGTGTTGATACGCCGTAAAACCCCACGTCACTTCACTGGACGATTTGCACTGATTAA-CATACCCGTATCCATTGATCAAACGAAACANNNNNNNNNN-NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTAACGGTACATTATAATCACATAATTATTCTTGTTA-TGTTTTGGAACGTGTACTTACTTATGTTGCTCTATT-TCGCACCTGCGTTTAGTTTCTATCGCACTTTTTCGTAAAGGGCATACGAACAATACAAATCCGAACGACATGGTCAGGGTGAGCTGTTGTCAAGATTTCGATATACATTATCAGTTGTCTG-ATTTTAAAGTTGCTTAGACATTTATTAAATTTGCTGGATCTCTACGATTAGAATCGCAATGGTGCTGTCTGCTGCTCAGTTCATTGTGCATGTAATGAAAGGTGTGGCTACGACTGGTACTGCTACTGC---TGCTGCTGCTGTCTCCATGCGGGACGTTTGATGGACGATTTTGGT-GTCTTGCGGACGTTGTGGTTTCCTGGTAACGCTCTGCAGAACTGCTCCTGAGGTA----AAAACATTTTCAAATCAATTTAACATCATTGTTATGATCAGTAAGCAATT-TTACATTACCCGGAGGCCAGGCCCGGTAAG
gi|16 : TCTGTAAACCACTAATGTTATTTACATTATGTA-CGTGTGAATCGATGAGTTCCGATTGATGGTCAATACACTC-ATGATTGACCATTGTATATATCTATCTTATATATGAATTACGCATTCATAAACAATGTAAATAAACTATC---ACACGTGTACTTGTAATAAGAGAGGTAAGACTAA----AAGATAA---AT
gi|19 : tataAAGAAA-TTGATTTGCTCTTTAAAA-GAAA-CG-------T-GTG-GCT-TCGGATGTCATATCCATCTATTGA-CCTACTGTCT------TATCCGAGCATATGCTA-CACAT-AG--AACATTGG-TTTTAGAT
gi|2 : AGTTATG-T-AACGTA---CATTTTATTAAC------CCATGTGTTTCCCTTTACGTAACGTGTGAATCGATTG-GTCATTACACTTT---A-AAACTGACCATCGCATATGACCATTGCAGTTATGAATTATACATTGATAGACATA-TAAT-TAA
gi|2 : gtactaaTTACGTAACGTGTGAATCGAT-------------TGGTCATTACACTTTAAAACTGACCATCGCATATGACCATTGCAGTTATGAATTATACATTGATAGAC-ATATAATTAAAC-ATTGGAACAACTATACTGATTAAA--ACAGGTAAGAGTCACGATAAGATCA---ATGCTATCTTTATCTTCATAATATA-TTTCAACAATGATTCAATATTTTTTGATAAGGATGTATTTTATGGATAATTGTATT-AACGTATTCCATTTGACTACC-GTCGGCCATGT-------TTT--TTAATAT-----TTGATTATATGATGACACTTT---AT-AATTGACCATGGTATATGACCATTGCAGATATGAATTATACATTCATGAGCTTATTAATATAATA--AATAAACAA-CTGGCAACACTCTTTTAATTAATACACACGAAGTCGTGACGGTGGGGATCGAACCTACCCTGGTTCAATGCTTTAGATATATTTATACCACCATACCATGCGTTACACAATTTAGTTTTGTGAGTGAGTGTTTTATTTCATATTTTGTAAAAAAGAACTTGATTTCCTTCTAAAAATGAAATCATTTCTATT-ATGTGCTATTGGAT---A-ATTTATGTTTGAGCCCTGTTGTCTTGTATATATTCAAGCATACGATATCACATCGGTTATAATTGACTTCTTGATATTTGTTAGTT-AACAATACCTCAGAATAATTATTCATATTCATACCGAGT-AAAATCGTTTACTGTTCGGGTCATACAGCATAGTTTTGTATTAATACGCCGTCAAACCCCACATCCATTCACTGGATGATTGGC--------A-CATACCCATATTCATAGATCAAACGGTACGTGTCAAGTTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAATCCC---ATTATTCTTATTACTGTTTTGAAACGTGTATTTGTTTACGTTGCTCTATTATCACAACTGAGTTTAATTTCTCTCGCGCCTTTTTGTAA---GCATACGAACAAAACAAATCCAAACGATATGGCCAGAGCGAGCTGTTGTCAAGTTTTCGATACACAC-----GTAATC---ATT---AAGTTGCTTAGACATATTTCACTTTTGCTAGATCTCTACGACTAGAATCACCATGGTGCTGTCTGTTGTTCGGTTAATTGTGCATGTGGTGAAGGGTGTGGCTGCTAATGGTACTGCTACTGCTGTTGCTGCTGCTGTCTCCATGTGGGACGTTTGGTGGATGGTTTTCGTCGTCTTGTGGACGTTGTGGTGTCCTGTTAACGCCCAGCAGAACTGCTCCTGAGGTGAGTTAAAACATGTTCAAATCATTTTTATATCAGTATTATTATCAGTTAGCAA-TATTACATTACTCGacattggaacaactatactgattaaaacaggtaagagtcacgataagatcaatgctatctttatcttcataatatatttcaacaatgattcaatattttttgataaggatgtattttatggataattgtattaacgtattccatttgactaccgtcggccatgttttttaatatttgattatatgatgacactttataattgaccatggtatatgaccattgcagatatgaattatacattcatgagcttattaatataataaataaacaactggcaacactcttttaattaatacacacgaagtcgtgacggtggggatcgaacctaccctggttcaatgctttagatatatttataccaccataccatgcgttacacaatttagttttgtgagtgagtgttttatttcatattttgtaaaaaagaacttgatttccttctaaaaatgaaatcatttctattatgtgctattggataatttatgtttgagccctgttgtcttgtatatattcaagcatacgatatcacatcggttataattgacttcttgatatttgttagttaacaatacctcagaataattattcatattcataccgagtaaaatcgtttactgttcgggtcatacagcatagttttgtattaatacgccgtcaaaccccacatccattcactggatgattggcacatacccatattcatagatcaaacggtacgtgtcaagttgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaatcccattattcttattactgttttgaaacgtgtatttgtttacgttgctctattatcacaactgagtttaatttctctcgcgcctttttgtaagcatacgaacaaaacaaatccaaacgatatggccagagcgagctgttgtcaagttttcgatacacacgtaatcattaagttgcttagacatatttcacttttgctagatctctacgactagaatcaccatggtgctgtctgttgttcggttaattgtgcatgtggtgaagggtgtggctgctaatggtactgctactgctgttgctgctgctgtctccatgtgggacgtttggtggatggttttcgtcgtcttgtggacgttgtggtgtcctgttaacgcccagcagaactgctcctgaggtgagttaaaacatgttcaaatcatttttatatcagtattattatcagttagcaatattacattactcg
gi|3 : gtactaaagttatgtaacgtacattttattaacccatgtgtttccctTACGTTATCACAT-GG--ATCNNNNNNNNNNNNNNNNNNNNNNNNN-NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGACGATTGGCACTGA-TAAACATACCCGTATTCATTGATCAAACGAAACANNNNNNNNNN-NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTAACGGTACATTATAATCACATAATTATTCTTTTTA-TGTTTTGAAACGTGTACTTACTTATGTTGCTCTATT-TCGCACCTGCGTTTAGTTTCTATCGCATTTTTTGGTAAAGGGCATACGAACAATACAAATCCGAACGACATGGTCAGGGTGAGCTGTTGTCAAGATTTCGATATACATTATCAGTTGTC-GGATTTTAAAGTTGCTTAGACATATACTTAATTTGCTGGATCTCTACGATTAGAATCGCAATGGTGCTGTCTGCTGCTCAGTTCATTGTGCATGTGATGAAGGGTGTGGCTGCGACTGGTACTGCTACTGCTGTTGCTGCTGCTGTCTCCATGCGGGACGTTTGATGGACGATTTTGGT-GTCTTGCGGACGTTGTGGTTTCCTGGTAACGCTCTGCAGAACTGCTCTTGAGGTA----AAAACATTTTCAAATCAATTTTTCATCATTGTTATGATCAGTAAGCAA-T-TTACATTACCCGGAGGCCAGGCCCGGTAAG
gi|7 : TTTAACATTTCACTACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGACACCAAAGTATGGGACGGAGAGA--GAGAGAGAGGTTAAATATTATATTTGTTTCACTTAAATAGATTAGCTGAAATAATACAATATAGCCATATTTAGTTTCAGGCACATGTATATCGTAGACAGTACTATCGTTTCATGTAACTAATATTTTACTAACCCCTGTGTTTCCCCTCTACCTCT-TAAACT-CTTTTGTTATTTAAATTATGTAACGTGTGAATCGAT-------------TGGTCATTACACTTTATAACTGACCATCGCATATGACCATTGTAGTCATGACTTATTAATTGATAAAC-ATATAAATAAAC-ATTTAAACAACnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnattagtagttggatgggtgggtggactgaagggcgattgtgctcttgttgaacgggcggacggatgtaattccatgtgaacggtggtacaggcgagtgggcggacgcacggacagaatatacattttcaagtgcatgtttgtaatggcattaggcattttatttgacctgtatttataggcgtagcatagtttcagttaatgtgggagaggcaacctggggagtgggagattatgagggacatctctttcgccagttggcctctccagaaaatgtcgatactttgaacaccaaaggctgcgtcttagtaagtgtttatgataaattatgatttatatttctccgcaatatttttttagttataaacgtttt
19 sequences could not be aligned to this reference sequence:
Unaligned ( gi|4 ): CTTTAGAAATTCCATTTGAACGTAGTGAATTATAGGCGTAGGATCGTTTCTGTAAATGGAAGATGGGTAACCTAGGGAGTGAGATGCTGCACATTTAAGTGAGTGTTAAGGATAAATTATGATTGATATTTACTCCAAAGTATTTTGTGAGTTTAAAACATTTTTTGTGTAAAACAAACGGTAATATGTATTAAAAAATAACATTCACCTAGTATTTAAACCGGTTCGTCAGCACATCATGCACTGGGAGCCTAGGCATAATGATGAAAGAGTGTGGGAGAGTAACATGTTAATAATATACGTTTTTATTTAACACACGTACGCAAGTATCGCACGCACACATGCACAGGCGTTCCATACCCGAAAAAAATACACACACAAAACTGAACAAAATATGCAGGAAACCAGGGCACATGGGAAAATGCGACAACCTCTCGCACTGATTTGGGTATGGGATGCCTCGCTCAGAATGTGTTATATATTCTTAACCTATTGCTAGATACAAATAAGATATTAGGATGAGAAAACGGCTGTTACTTAAATAATTTAATATATTGTGACTTTAAAAGTATTAAATAAACAGACTGTCACGTAAAAACTTAGAAAAAGTTATATGATGTAACAAAGAAACCCCACCCCCTGATTTTATACTCAAGTCATGGAAGATGGTTTCATGCTGGCGGGGACACGGGAGATCTCCTCCGAAATTTTTATGACTAAAAAATAAATGTTCATTTTATTTAGTTTTAGAGAAAATAGATGTTAATATTTATTCTATTTTGTTATTTTTAAATGCTTACAAATTAACATACAATACTCTTAGAAAATATACAATCAGATGTATTTTAAAGATAAACCGAGTTTCAAACCCGATACCTCTTCCATTACAAGACAAAACGTGAAGGATAGTGTTGGACGAGGCTGGTGGCGATATTGGGGACTCCCTCGGATTTTTTTTTGTATTTAAACACCAAAGGCCTGACTGAGTGAGAATTTAAGACAAATATATGGATGGTGAATCAGGAATTTGGTATTATGTGACGATAAACATTGCTATTAAAATATTGGGGGAGGGCAAAGTATATGCATGCTGGCCCCCAACATGAACATTGATGGGGTTGGGTAGAGGCACTCCGACTGCTCCCGGCTCCTACACCTATAGTAATAAAAAAACGGATCACAC
Unaligned ( gi|5 ): TTTAAAAATGAGCGTCCAATGGGTTTTAAACAACATGCATGACAACATGACAAAACAAAACGTGAGGAAGAATATGAAGAGGGCTGGTGGCAGCACTGGATATTAACCTGAAAAAATATGATATTTAAAATAACAAATCCAGCATTCTAGTGAGTTTTGAGGGGTAAAAAATATGTTGTCATTTACTCCATATGTTTGATATCGTGTGACCTTTAGACATACAAAATATTGGGGTGGGGGACAAAGTTTATGCAGGACCCCCAACCCGAAATGGGAGGGAGTTCCTCTGGCCTCCGGCTCCTACGCCTTTGTTACTCCAGTGCGGGAGAGGATGTCCCTTTGCTGGTTGGGGTATGGGCGGCCTCGTATGGAAAATCTTTATATATTAAAAATTAAATACTGCATGTAGGTAACAATAAGGTGGAAAAAGTTGTTGTTTACTCCAATATTTTTTGTGACAATTAAACGGTTTATTAAGAAAAAATATGTATTAAAAATGAGCGTCCACTGGATTTAAACCTCATGTATGACAACTGTGAGAAAGAATACGAAGAGGGCTTGCGATGGTACGGGGTCTTAACCTGGAAAATTTAGATATATTAAAACAAAAAATGCTGCATTTGTGGGGGGGGGGGGATAAAATATGCTCTATTATTACCCCAAAATTTTGGTATTTTGTGACCTTTAAACATTTTTTATCAAAGTATTGGGCGAGGGTGCATAGTATAAGCTGGCCAACCTGAGTACTGTAGACGGGGACGGCTCCCATTGCCTCGTCCAGGTCGGCTCCTACGCCT
Unaligned ( gi|6 ): ATACCCAATAGGAACGATATTCGTTGCCCTTAGGGGATTCTCTGCTTATAGGGGTATGGGGACTTCTCTCCGAAAGTTTGGATATCTTAATAAGCAAATACTGCATTCAAGTTAGTTTAAAGGGGAAACGATTCTTAATTACATCAATGTTGGAGGGGGTGTCCCCTGCCGGTGGGGCTACTGGCCTATCCAGGAAAAAATAGATCAAATACAAAAAATATATAAGTTGTATTAAGATATGAGCATCCAAAATGTTTAAATCACTTGCATGACAAAACCTTAGGAAGTGAGGAAGAGTGTGAATAGTACTCGTGGCGATACGGGGTTTTAAACCAGACTTTTTTATATTTAGAACAACAAATGTTGCATTCTAGTGATTGTTTAGCTTAAAAATATGTTGTCATTTACTCCAGATGTTTGGTTTTGGTTTTTGTGACACTTAGGCATTTTTATCAAAATATTAGGGGGATTGGGATGGGCAAAGTATAAACTGGCCCCAAACCTGAACATTGGTGGAGCGGCCCCTTCTGGTCCCCGTGGCTCCTACGCA
Unaligned ( gi|8 ): TATATATATATTGTCAGAAATGACACTATCAAGCTCATGTTAGAAATTGCATTAGAAATTTCATTTCAAATGTATTACATGTATTATAGGCGTATTATCGTTTCAATAATTGGAGGTGGGCAACCACGGGAGCGGGAGGTTGTGAGGGACACCTCCCCTCCGGTTGGTTGTAATACAAAGGCTTCCCTAAGAATATTTCGATATCTTAAACATTAAAAGCTGTGTTTTAATGAGTATTTAGTGAGTTTATTTACTTCCCAATAGTTTATATAGTGAATTTTAAACGTTTTATGAAGTAAAAACGATAATATGTATAAAAAAACGATCTTTAACCGGACTTAAATAACGGTACCTCAAGCACTGGAGCCACAAATGGTAAGATAGGGTTGATGGGGAAAATTTATTACGAAACATTTCAGTA
Unaligned ( gi|9 ): ATATAATATAAATGACATTTCGATTACAAAGTGAATTGTACAAATTCCGACAAACGGAGTATGTTTTGTTCACGGCCGTAGATGAGTTTCAATTATTGAGGAGGGGAGGGCATTTTGGTGTATCCCCTCCCGTTGTTGATGGGGGATATCCTTGAACATTTTGATATATTCAACACCAAATGCTGCATAATAGGAAGATGTTATGAATAATTTTAGGAGTTTTATTTACTCATGGGACCAATATTGTGTGACTTAAATGTTTTATTAAGT
Unaligned ( gi|10 ): ACGGTGAGGCAAAAGGTTAGGAAAAGCGTGTAGGTATGCTGGTAGCATGTGGTGACCTCCTTAGGAAATTGTGATATTTAAAATACCAAATGCTGCATTCTAATGAGCTGTAAGGATAAAATAATATGCTTGTCATTTATTCCAGATGATTGTTTTTTTTTTTCACTTTTAATTATTGTTATTAAGATAAGGGATATATATGCTGCCCCTCCTTAACATTAGAAGGGGGGCCAACCCAACTGCTACCTCCCCTGGCTCCTATGCTT
Unaligned ( gi|11 ): TTTCCTCAGAAAGAATACAAGACTTTATTTAAAAAAGACGAAGGTCCCCGGGATTTAAAACACGCACGCAAGTTGCGATCCAAAACGTGACGGAGAGTGTAGAAGGCTGGCGATAGTGGGGCGCCCCCTGAAATATTTGATGTTTGGAACACCAAATTTTGCATTCTAGTGATTTGTTTAGTGATTATCGTTTACTTCAGATGTTTTATATTTTGCGACGTTTTTTTTTTTATATAAAACTATCTGGGTGG
Unaligned ( gi|12 ): GAGTGTATGAGGAGAGAGTGTATGAGGAGAGAATGTTGGATCGAGCTAATGGCGGCACACAACCAAGCGGAATTTTTTTATATTTAAAACAACAAATGCTGCATTATAGTGAGTTGTTAGGGTAAAGAATGAGGTGTTGTCATTAAGGTGTTTGGTATATTGTGACTTTAAAACATTTTTATCAAAATATTGGGGTGGGGTGGCAACTTGAACATTGGTGGGAGGGGATAGGGCGC
Unaligned ( gi|13 ): AATATTGGGGGTAGGAGCAACGTGTATGCTCCCCCATCTTAACATTGAAGTGGTTGGGTGGATCCCCAACCACACACGAGTTTTTCGCTTACGGTAATAAATATTGATCACAGAGGTTTTCATAAATTGGAATGAAGGCCAATGTAATGCATAACAGGTCATATTTGACAACCTGTACTTTTGGTGTAAAACAACTCACTAGTCATATGCATGAGCAACTGCGTAGAACT
Unaligned ( gi|14 ): GTTTTAAACCACATGAATGACAAGCCAAAATGTAAGGAAGAGTGTGAAGGGGTGGGATCCGATACGGGGTGTTAACCTGGACTTTTTTATATTTAAAACAAAAAATGCTGCATTCTAGTGATTTTAGGGTAAAAATATGTTGTCATTTACTCCAGATGTTTGGTATTTTGTGACCTTTTTACATTTTTATAAAAAAAATGGGGGGGGGGGGCAAAGTATTTGC
Unaligned ( gi|15 ): TATTTAGAAACAATAAATGTTGCTTTTAATGAGCTTTTAGGATAACACTATGGATTGTCATTTATTTCAGATGTTTGATATTTTGTTACATTTAAACATTTTTATTAAAATATGGCGTTGGGGCGGGGTACAAAGTATGCCATATTAGCTGGCCGCCTAACCCCTAACCCGTCATTGAACATTAGTGGGGCCCTGAA
Unaligned ( gi|17 ): AGAAAAGCTTAGACAAAAAAGTATGAGATATATCAAAAAGAAACGAACCTCCACCGGACGTGGGGGAGACTGTGAAAAATTGTATTATCGCTGGTCGGGTTACGGGAGGTCGCCCCCGTAAATTTGTGATATTTGTACATTCTATTTAGTTTTAGGGGAAATGGTTGTTATTCAA
Unaligned ( gi|18 ): ATGGTAAAATATTGGAAGGGGGGTGCAAAGTATATACTAGGCTCCTCCAACCTGAAGAAGTGGGGGTGGGGTTGGGGGCGGACCCCATCCCTGGCTCCTACGCTTATGGTATATAC
Unaligned ( gi|20 ): TTAAAGGCAATTCAATACATAACATGCTATTATATAATAATATTTATCACAGCATATTCTTTTGATGTACTTTTGGTGTAGAAAAATCTCATTTATTAGATGCA
Unaligned ( gi|21 ): CAAAAATGCTGCAATCTAGCTATAGGCTAAAGTTAAGTTTTATTAATGTTTGGTATTTTGTGTTGTTTTTTTTTTTAAATGGGGGGTGGGGGTAATGTCTATA
Unaligned ( gi|22 ): TACACCGGCCTTCAACATGAACATTGATGGAGTTAGGTGAAGGCGCACCAACTGCTTCTGGTCCCACGCCTATGGTAATATAAGATGGACCACAGA
Unaligned ( gi|23 ): GCATTTTTATTAATCTATTAGGGACAAGGCAATATATATACTGGCCTACCCATCCTGAACATTAGAATAGGGGTGCCGGTCCCCGACTCT
Unaligned ( gi|24 ): TTGAGTAAAATACTGGGGTGTGGGGTGGGTCAAAATATATGCAGGCCCCTCCAACCTGAACAG
Unaligned ( gi|25 ): CCAGATGTTTGATACTTTGTCACTTTTAACATCTTTATTGAAATATTGTGT