lowQualScore : 2222222222222222 1111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 1111111111111111111111111111111111 3333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333
lowQualScore : 11 1 3 1 333 1 333 1 222 33 1 0000000000000000 11111 111 1 2 444444 11 1 11 11 11 111 11111 2 111 1111 111 33333333333333 1111 222 11111 11 444444 11 1 444444444 11 2 6666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666 11 5555555555555555555555555555555555 1 1 111111 22222 1 99999999999 1 2222 1 1 333333333 7777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777 1 22 222
lowQualScore : 6 11 7 2 11 0 7 3 2 7 0 666 5 777 1 999 77 0 6 6666666666666666 0 8 6 6 77777 444 3 3 1 0 999999 3 11 0 0 4 33 22 4 7 5 1 0 44 5 8 2 2 0 7 5 6 1 0 00 0 333 1 1 2 11111 3 5 3 0 3 2 222 3 99 4444 2 333 33333333333333 5 6 2 4444 000 5 5 0 11111 22 5 0 7 5 3 555555 1 44 0 000000000 33 00 6 0 6 3 4 88 0 7 1111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 6 22 7777777777777777777777777777777777 5 777 5 6 6 6 6 6 444444 6 11111 77 8 6 00000000000 7 6 5 7777 5 2 6 5 222222222 9999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999 0 5 5 33 5 2 444 1 5
lowQualScore : . .. . . .. . . . . . . ... . ... . ... .. . . ................ . . . . ..... ... . . . . ...... . .. . . . .. .. . . . . . .. . . . . . . . . . . .. . ... . . . ..... . . . . . . ... . .. .... . ... .............. . . . .... ... . . . ..... .. . . . . . ...... . .. . ......... .. .. . . . . . .. . . ........................................................................................... . .. .................................. . ... . . . . . . ...... . ..... .. . . ........... . . . .... . . . . ......... .................................................................................................................................. . . . .. . . ... . .
lowQualScore : 0 00 0 2 66 8 8 2 0 0 8 000 0 000 8 000 00 0 0 0000000000000000 8 0 0 0 22222 000 0 0 8 0 666666 2 00 8 0 8 88 88 8 2 0 2 4 44 0 0 2 2 4 4 0 0 0 3 77 7 000 7 7 1 66666 0 7 7 3 1 5 777 2 55 2222 8 999 66666666666666 7 0 2 2222 000 7 7 1 99999 33 7 1 9 7 5 555555 4 88 0 000000000 88 55 5 3 7 7 7 77 7 3 0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 0 00 5555555555555555555555555555555555 0 333 7 0 0 0 0 0 333333 7 77777 77 2 6 00000000000 0 0 0 5555 0 8 0 0 000000000 0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 8 0 7 66 7 1 333 5 0
consensus : CAAAAAAGAAAGTACCCACTCTATAT--ATCTATCATTATAAAGAAAAGGAGTACACATTCGGATTTAATTTTTTAATTGAAGTAAAGAACAATTTATTCTTGAAGTCCTGTGAAAATTTGAAGCAGCTGCAATATGTCTTTCATCG--AAAAAAATGGACCGATATGACGTAGGGGTCGATTTCCGAAGTAACAACGGTTTTGATAAATCTGCACTTGTAATCGGGAAAGTTTAAAACTCAATTTT-ATGGGATTTTTCTGCAGTGAAAATGTGA-TGTGGGTTGCAGTAAAAGATTTAATATCTCA----TNTGCCCGCCGTGTTGCCCAATGCACGTCATG-ATCCGCCGTCGCATGCTGTCGACGTAACG-CTGTACGTA---CGGCGCCGGTAAATTGTCCCATTCAG-CCGGTAGGGCTGCTGAAAGGTCCTGCACCGTGTTGAT--TGCATAATTTGTTCTAACACGGCG-TCCTAACTCGTCCCA--TATGTGTTCGATGGGATTTAAGTCAGGACTATTCGCCGGCCAGTCNAAAACATTGACGTTATTATCCGCCAAGAAACGTCGAGTAA-GTGCAGCTGTATGGGGACGGGCGTTATCATGCATAAGTGTGACGTTCGGTCCGTGGCGCTGAATAAAAGGAACAACTTCTGGT-TCAAGAACATTATTGACGTAGGTCTGGGCATT--GATGTTTCCTTCAATAACGATNAGGCG---GGTCTTGTGTA-CATCCATAATTCCA-CCCCAGACTA--ATACTGAACCTCCCCCAAAGCGGTCTCTCTCAATGACGCACGCATCAGCGTAA----CGCT--CCCCC--------------C-GACGACGGTANA----TTCTCTCACGT--CCGTCGGC-ATGACTCAAAT-TGAATCGAGACTCGTCCGAAAACAATACT-GATCTCCA-ATCAGCA-CGTCGGAAACGCCGGCGACGTC-GGC---------ACC--AGTCGAGTCTCGCA-CCCGACGACGTCTNGTNANNATTTGGCCGAAATACGGT----A-GGAC------GAATCGGGT--GGCATTNTGTCGCANTCGNTTCC----GNNCTGT-------CCG---AT---ATGCC-TC---CTGTTGCTGATGCCGACAGACGTCGGTTACGTAAGTGTTGAACCGTGAGTGTTGACCGATCATCGGCCGCAGTCGTCACACGTGGCCGACCGCTTCGGGGACGGTCCCAAACGTTTCCCCTGATCTGGAAACGTCTTCGCAAACGCTCAATTGTCTTCCTCGTGCAGCCGAACAGCCGGGATACTTCGGCTACTGTAGAGCCAGCATTCAG--CGTCCCGATCGCCTGATTTCTTTGGTCGTTATTTAGTCTTG-CTTGGCATTGCAATTTGACTTGATTTTATGTGATATTTTTGTATTG-TGCCTAATTTCTGGTCAATAAGTGCAGTCAGATACCACCACCGGATATCGACCGTCGCT---------GCACG--------GAGC---------------GCACGTG----------CAA-----------CGCGGG-CAA------C------CTC---GGCT------------AAGCGC--------TTGGCTGATTATTGATAAAACCAACTTTGACAGGTACTCCAACGAATACATGTACATTATTTATAGCTTATTTTGACAAATTATTAATATTGAGGAAATAA-TGAT-AGANAAATN-AGAGTGGGTACTTTCTT-TTTTGGCTCAGTATATATA
Reference ( gi|2 ) : CAAAAAAGAAAGTACTCACTCTATAT--ATCTATCATTATAAAGAAAAGGTGTATACATTCGGATTTAATTTTTTAATTGAAGTAAAGAACAATTTATTCTTGAAATCCTGT-AAAATTTGAAGCTGCTGCAATATGTCTTTCATCT--AAAAAAATGGACCGATATTACGTAGGGGTCGATTTGC-AAGTTACAACGGTTTTGATAAATCTGCACTTGTAATCGGGAAAGTTTAAAACATGATTTTCATGGGATTTTTCTGCAGTGAAAATGTGA-TGTAGGTTGCAGTAAAAGATTTAATATCTC-----T----------TGTTGCCCAATGCACGTCATG-ATCCGCCATTGCATGCTGTCGACGTAACG-CTATACGTA---CGGCACCAGTATATTGTCACATTCAGTCTTCTAGGGCTGCTGAAAGGTCCTGCACCGTGTTGAT--TGCATAATTTGTTCTAACACGGCG-TCCTAACTCATCTCA--TATGTATTTGATGGGATTTAAGTCAGGACTATTCACTGGCCAATCTAAAACATTGACGTTATTATCCGCCAAAAAACATCGAGTAA-GTGCAGCTGTATGGGGACGGGCGTTATCATTCATAAGTGTGACGTTCGGTCCGTGGCGCTGAATAAAAGAAACAACTTCTGGC-TCAAGAACATTATTGACGTAGGTCTGGGCATT--AATGTTTCCTTCAATAATGATTAGGAG---GGTCTTGTGTA-CACCCATAATTCCACCCCCAGACTA--ATACTGAACCTCCCCCAAAGCGGTCTCTCTCAATGACGCACGCATCAGCATAA----CACT--TCCCC--------------C-GACAACGGTAAA----TTCTCTCACGT--GCGTCGGC-ATGACTCAAAT-TGAATCGAGACTTGTACGAAAACAATACT-GATCTCCA-ATCAGCT-TGT-GGAAACGCCGGCAACGTC-GGC---------ACC--AGTCGAGTCTCGCAGCCCGATGACGTCTGGTTAAAATTTGGCCAAAGTATGGTCTGTACAGAT------GAATCGGGTC-AACATTTTGTCGCAATCGATTCC----GAACTGT-------CTG---ATTCCATGCCGTCACTCTGTTGCTGATGCCAACAGATATC-------------TTGAACCATGA-TGT--ACCTATCATCGGCCTCAGTCGTCACATGCGGCAGACCGCTTCGGGGACGGTCCCAAGCGTTTCCCCTGATCTGGAAACATCTTCACAAACACTCAGTTGTCTTCCTCGTGCAGCCGAACAGCCAGGATACTTCGGCTACTGTAGAGCCAGCATTCAG--CGTCCCGATTGCCTGATTTCTTTGGTCATTAATTAGT-----C-----ATTGCAATTTGACTTGATTTTTTGTAATCTTTTTGTAATT-TGCCTAATTTCTGGTGAGTAAGTGCAGTCAGATATCACCACAGGATATCGACCGTCGCT---------GCACG--------GAGT---------------GC---------------CAA-----------TGCG-------------------CTT---GGCT------------GA------------TT-----ATT---GATAAAACCAACTTTGACAGGTACTCCAACGAATACATGTACATTATTTATAGCTTATTTTCACAAATTATTAATATTGAGGAAATAA-T--T-AAAAAAA-A-AAAGTGGGTACTTTCTT-TTTTGGCTCAGTATATATA
gi|1 : CAAAAAAGAAAGTACCCACTCTATAT--ATATATCATTATAAAGAACATGAGTATACATTCGGATTTAATTTTT-AATTTAAGTCAAGAACAATTTATTCTTGAAGTCCTGTGAAAATTTGAAGCAGCTGCAATATATCTTTCATGG--AAAAAAATGGACCGATATGACGTAGGGGTCGATTTTCGAAGTAACAACGGTTTTGATAAATCTGCACTTGTAATCGGGAAAGTTTAAAACTCAATTT--ATGGGATTCTTCTGCAGTGAAAATGTGAATGTGGGTTGCAGTAAAAGATTTAATATCTCATGTGTCCGCCA----TGTTGCCCAATGCACGTCATG-ATCCACCGTCGCATGCTGTCGACGTAACG---------------GCGCCGGTAAATTGTCCAATTTAGCCTGA-AGGGCTGCTGAAAGGTCCTGCACCGTGTTGAT--TGCATAATTTGGTCTAACACGGCG-TCCTAACTCATCCCA--TATGTGTTCGATGGGATTTAAGTCAGGACTATTCGCCAGCCAGTCTAAAACATTGACTTTATTATCCGCCAAGAAACGTCGAGTAA-GTGCAGCTGTATGGGGACGGGTGTTATCATGCATAAGTGTGAAGATGTGTCCTTGACGCTGAATAAAATGAACAACTTCTGGT-TCAAGAACATTATTGACGTAGGTATGGACATT--GATGTTTCCTTCAATAACGATTAGGCG---GGTCATGTAAA-CATCCATAATTCCA-CCCAAGACTA--ATACTGAACCTCCCCAAAAGGGGTCTCTCTCAATGGCGCACGCATCAGCGAAACGCCCACG--CCCCCCCCCCCCCCCCCCAC-GACGACGGTAGA----TTATCTCACGT--CTATCGGC-ATGAATCAAAT-TGAA---A---TCGTCCGAAAACAATACT-G-----CACGTC---------GGAAACGCCAGCGACGTC-GGT---------ACC--AGTCGAGTCTCGCAACCCGATGACGTCTTGTTAAAATTTGGCCAACGTACGTTCTGTACGGAC------AAATCGGGT----CATTTTGTCGCAATCGGTTCC----GAACTGTCTGTGCACTG---ATTAAATGCCGTCGCCCTGTTGCTGATGCCGACAGACGTCGG-----------TTA---CGTAAGTGTTGA---ATTATCGGCCGCAGTCGTCACACGTGGCTGACCGCTTCGGGGACGGTCCCAAACGTTTCCCGTCATCTGAAAACGTCTTCGCAAACGCTCAATTATCTTCCTCGTGCAGCCGAACA----------TTC---------------AGCATCCCGATCG-CCTGATT--------TCTTTGGTCGTTACTTAGTCTTGGC-----ATTGCAATTTGACGTGATTTTATGTGATCTTTTTGTATAA-TGCCAAATTTCTGGTCAATAAGTGCAGTCAGATACCACCACCTGATATCGACCGTCGCT---------GCACG--------GAGT---------------GCACGTG----------CAAAACAAGTTAATCGGG-------------------CCTCCCGGCT------------AAGCGC--------TTGGCTGATTATTGATAAAACCAACTTTGACAGGTACTCTTACGAATACATGTACATTAATTATAGCTTATTTTGACAAATTGTTGATATTGAGGAAATAATT--T-AAAAAAT-A-AAAGGGGGTACTTTCTT-TTTTGTCTCAGTGTAT
gi|3 : actgagcCAAAAAAGAAAATACCTACTCTATATTTATCTATCATTATAAAGAAAAGGAGTACCCATTCGGATTTAATTTTTTAATTGAAGTAAAGAACAATTTATTTTTGAAGTCCTTTGAAAATTTGAAGCAGCTGCAATATGTC-TTCATCGAAAAAAAAATAGACCGATATGACGTAGGGGTCGATTTCCGAAGTAAAAACGGTTTTGATAAATCTACACTTGTAATCGGGAAAGTTTAAATTTCAATATT-ATGGGATTTTTCTGCAGTGAAAATGTGA-TGTGGGTTGCAGTAAAAGGTTTAATATCTCA----TGTGTCCGCCGTGTTGCCCAATGCACGTCATG-ATCTGCCGTCGCATGCTGTCGACGTAACG-CTGTACGTA---CGGCGCCGGTAAATTGTCCCATTCAG-CCTGTAGGGCTGCTGAAAGGTCCTGCACCGTGTTGGT--TGCATAATTTGTTCTAACANNNNN-NNNNNNNNNNNNNNN--NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCATAAGTATGACGTCCGGTCCGTGGCGCTG-ATAAAAGAAATAACTTCTGGT-TCAAGAACATTATTGACGTATGTCTGGGCATT--GATGTTTCCTTCAATAACGATAAGGCG---GGTCTTGTGTA-CATCCATAATTCCA-CCCCAGA--A-------GAACATCCCCCAAAGAGGTCTCTCTCAATGACGCACGCATCAGCGTAA----CGCT--CCCCC--------------C-GACGACGGTAAA----TTCTCTAACGT--CTGTCGGC-GTCACTCTAAT-TGAATCGAGACTCGTCCGAAAACAATACT-GATCTCCA-ATCAGTA-CGTCGGAAACGCCGGCGACGTC-GGC---------ACC--AGTCGAGTCTCGCt
gi|4 : atactaagcCAAAAAAGAAAGTACCCACTCTATAT--ATCTATCATTATAAAGAAAAGGAGTAAACATTCGGATTTAATTTTTTAATTGAAGTAAAAAACAATTTATTCTTGAAGTCCTACGAAAATTTGAAACAGCTGCAATATGTCTTTCATC-------GAATGGACCGGTATGACGTAACTGTCGATTTCCGAAGTAATAACGGTTTTGATAAATCTGCACTTGTATTCGGGAAAGTTTAAAACTCAATTTT-ATGGGATTTTTCTGCAGTGAAAATGTGA-TGTGGGTTGCAGTATAAGATTTAATATCTCA----TTTTCCCGCCATGTTGCTCAATGTACGTTATG-ATCCGCCGTCGTATGCTGTCGACGTAACG-CTGTACGTA---CGGCGCCGGTAAATAGTCCCATTCAG-CCAGTAGGGCTGCTGAAAGGTCCTGCGCCGTGTTGAT--TGCATATTTTGTTCTAACA
gi|11 : attgagcAAAAAAGAAAGTACCCACTCTATAT--ATCTATCATTATAAAGAAAAAGAGTACACATTTGGATTTAATTTT-TAATTGAAGTAAAGAACAATTTATTTTTGAAGTCCTGTGAAAATTTGAAGCAGCTGCAATATGTCTTTCATC---GAAAAAATGGACCGAAATGACGTAAGGGTCGATTTCC-GAAGTACGACGGTTTTGATCAATCTGCACTTGTAATCGGGAAAGTTTAAAAnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnacaacttctggttcaagaacattattgacgtaggtctggtcattgatgtttcattcaataacgataagtcgggtcttgtgtacatccataattccatcccagactaatactgaatctcccccaaagcggtctctgtcaatgacgcacgcatcagcgtaacgctccccccgacgacggtaaattctcttacgtccaccggcatgactcaaattgaatcgaccctagtccgaaaacaatactgatctccaatcagcaggtcggaaacgccgg
gi|8 : tatactgaaccaAAAAAAAAACTATCCACTCTATAT--ATCTATCATTATAAAGAAAAGGAGTATACATTCGGATTTAATTTTTTAACTGAAGTAAAGAACAATTTATTCT----------T-AAAGTTTGAAGCAGCTGCAATATGTCTTTCATCG--AAAAAAATGGACCGATATGACGTAGGGGTCGATTTCCGAAGTAACAACGGTTTTGATGAATCTGCACTTGTAAGCGGGAAAGTTTAAAACTCAATTTT-ATGGGATTTTTTTGAAGTGAATATGTGA-TGTGGGTTGCAGTAAAAGATTTAATATCTCA----TGTGTCCGCCGTGTTGCCCAATGCACGTCATG-ATCCGCCGTCGCATACTGTCGACGTAACG-CTGTACGTA---CGGCACCGGTAAATTGTCCCATTCAG-CCTGTAGGGCTGCTGAAAGGTCCTGatctcagttt
gi|6 : actgagtAATGCATG-CACGCATTCTTCGTCTCATACTCCTAACGTAAGGTCTG-ATGTAAGCTGGTGCCAATGTATT--C-CACTCACGCTGA-AGAGCTGCAGCTAGGT--TG-ACTGTGTTGATGTTGCC--ATTTTTTCGAACACAATGGTCCTAATTCGTTCCAATTATG--TTCAATGGGAGACGAGTCTGGACTGTTGGCTGGCCAGTTCAACAGATTAACGTTGTTCTGCGCAAGAAAATGACGAGTAACGT-TAGCCGTATGA--------------ACTCTTACGTCTGCAGCT-AGCCCATGTTGTTGTATAAATGGTAGTGCCTCTGGA-ACAAGGATCTGGTTGATATACGCCTGTACAGT--CACGTTGCCATTGACTGTAGTTAGTCG---TTGCCCGT-TACCGTCCATTATACC-TCACCATACAAGCACACT--ACCACCACCAAAATGATCTCTTTCCAAAATGCAAGCATCCGCG-AA----TTGT--CCCCT--------------T-TACGTCTGTATACCCGTTCCCACCCATCAGCGT-GGCTATGATTTAACT-T-CATCA------GTA--AAGAGAACA-T-GAT-TCCA-GTCTGCTCTTT-TAAAATGCAAGTGGCGTC-TGC---------ACC--AATTAACTTGTGCATCTCGATGACGTTGAGTAAGGATCTGCCCAAAATATGG-----A-AGATTGGCGCGAAT-GGGTCTGGCATTGAATCTCAGTCTCTTCCTCATGGTTTGT-------CCGGAAATACCATATCTTCTAGCTGTTACTG
gi|5 : taggacctgatgagtcctccattctaattTCCTTTACCGTGTTGAT--TTCATAATTTGTTCTAACACGGCA-TCCTAACTGATCCTA--TATGTGATCGATGGGATTTAAGTCAGGACTATTCGCCGGCCAGTCTAAAATATTGACGTTATTATCCGCCAAAAAACGTCGAGTAA-GTGCAGCTGTATGGGGACGGGCGTTATCATGCATAAGTGTGACGTTCGGTCCGTGGCGATGAATAAAAGGAACAACTTCTGGT-TCAAGAACATTATTGACGTAGGTCTGTGCATT--GATGTTTCCTCCAATAACGATTAGGCG---GGTCTTGTGTA-CATCCATAATGCCA-CCCCAGACTA--TTACTGAACCTCCCCCAAAGCGGTCTCTCTCAATGACGCACGCATCAGCGTAA----CGCT--CCCCC--------------C-GACGACGGTATA----TTCTCTCACGT--CCATCGGC-ATGACTCAAAT-TGAATCGAGACTCGTCCGAAAACAATACT-GATCTCCA-ATCAGCA-CGTCGGAAACGCCTG--ACGTCTGGTTAAAATTTGGCCAAAGTACAGTCT-GTA--CGGACGA-ATCTGGTCATCATTTTGTCGCAAT-TGGT-------------------TCCG----AACTGTCTGT-GCACT-GATTCC----ATGCTGT-------C------------GCC------CTGTTGCTGATGCCGACAGACGTCGGTTACGTAAGTGTTGAACCGTGA-TGT--ACCGATCATCGACCGCAGTCGTCACACATGACCGACCGCTTCGGGGACGGTCCCAAACGTTTCCCCTGATCTGGAAACGTCTTCGCAAACGCTCAATTGTCTTCCTCGTGCAGCCGAACAGCCGGGATACTTCGGCTACTGTAGAGCCAGAATTCAG--CATCCCGATCGCCTGATTTCTTTGGTCGTTATTTAGTCTTGAC-----ATTGCAATTTGATTTGATTTTATGTGATCTTTTTGTAtcgctgggagaaaatgtcgacgtaggtgt
gi|9 : TCAGTACTATTCTTTGGCCAGTCATAAACATTGACGTTATTATCCG---AGAAACGTCGAGTAA-GTGCAGCTGTATGGGGACGGGCGTTATCATGCATAAGTGTGACGTTCGGTCCGTGGCGCTGAATAAAAGAAACCACTTCTGGT-TCAAGAACATTTCTGACGTAGGTCTAGGCATT--GATGTTTCCTTCAATAACGATTAGGCG---GGTCTTGTTTA-CATCCATAATTCCA-CCCCAGACTA--ATACTGCACttgtatagc
gi|17 : TAAATGGAATGACTTC-AGCATCTAAAACCTCATCAATGTTCCTCTGAGCATTCAAAT---TCC--CACGAATGACAAAGAGTCAGGTCTTTTGTC-CCCCCATGATCCCACCCCgcacgcatcagcgtaacaccgaccccccccccccccccccccccccctcccccctgacgatggtaaattctcttacgtccgtcgcatgactcaaattgaatcgatactcgtccgaaaacaatactcatctccaatcagcacgtcggaaac
gi|4 : ACAACTTCTGGT-TCAAGAACATTATTGACGTAGGTCTGGTCATT--GATGTTTCATTCAATAACGATAAGTCG---GGTCTTGTGTA-CATCCATAATTCCATCCC-AGACTA--ATACTGAATCTCCCCCAAAGCGGTCTCTGTCAATGACGCACGCATCAGCGTAA----CGCT--CCCCC--------------C-GACGACGGTAAA----TTCTCTTACGT--CCACCGGC-ATGACTCAAAT-TGAATCGACCCTAGTCCGAAAACAATACT-GATCTCCA-ATCAGCA-GGTCGGAAACGCCGGgaatct
gi|9 : attgagccaaaaaagaaagtacccactctatatatctatcattataaagaaaaggagtaaacattcggatttaattttttaattgaagtaaaaaacaatttattcttgaagtcctacgaaaatttgaaacagctgcaatatgtctttcatcgaatggaccggtatgacgtaactgtcgatttccgaagtaataacggttttgataaatctgcacttgtattcgggaaagtttaaaactcaattttatgggatttttctgcagtgaaaatgtgatgtgggttgcagtataagatttaatatctcattttcccgccatgttgctcaatgtacgttatgatccgccgtcgtatgctgtcgacgtaacgctgtacgtacggcgccggtaaatagtcccattcagccagtagggctgctgaaaggtcctgcgccgtgttgattgcatattttgttctaacannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnACGCACGCATCAGCGTAA----CACCGACCCCC--------------C-
gi|9 : tcagtactattctttggccagtcataaacattgacgttattatccgagaaacgtcgagtaagtgcagctgtatggggacgggcgttatcatgcataagtgtgacgttcggtccgtggcgctgaataaaagaaaccacttctggttcaagaacatttctgacgtaggtctaggcattgatgtttccttcaataacgattaggcgggtcttgtttacatccataattccaccccagactaatactgcCT--CCCCC--------------CTGACGATGGTAAA----TTCTCTTACGT--CCGTCG-C-ATGACTCAAAT-TGAATCGATACTCGTCCGAAAACAATACT-CATCTCCA-ATCAGCA-CGTCGGAAACccccccccccccccccccctcccccctgacgatggtaaattctcttacgtccgtcgcatgactcaaattgaatcgatactcgtccgaaaacaatactcatctccaatcagcacgtcggaaac
gi|15 : tcagtactattctttggccagtcataaacattgacgttattatccgagaaacgtcgagtaagtgcagctgtatggggacgggcgttatcatgcataagtgtgacgttcggtccgtggcgctgaataaaagaaaccacttctggttcaagaacatttctgacgtaggtctaggcattgatgtttccttcaataacgattaggcgggtcttgtttacatccataattccaccccagactaatactgcacgcacgcatcagcgtaacaccgaccccccccccccccccccccccccCGTCAGC-ATGACT-AACTGTGAACCGAGATTCATCAGTGAACAAAACTCGGT-TCCA-
gi|7 : ctgttcttctcaacaatgcaacaatcggcgaatctttcatttttacgcctgtatacccgtaatcttcACGTGGCCGACCGCTTTGAGGACGGTCCCAAACGTTTCCCCTGGTCTGGAAACGTCTTCGCTAACGCTCAATTGTCTTCCTCGTGCAGCCACACAGCCGGAATACTTCGGCTACTGTAGAGCCAGCATTCAG--TATCCCGATCGCCTGATTTTTTTGGTCGTTATTTAGT-----CTTGGTATTGCAGTTTGACTTGATTTTATGTGATATTTTTGTATTG-TGTCTAATTTCTGGTCAACAAGTGCAGTCAGATACCACCACCGGATATCGACCGTCGCT---------GCACG--------GAGC---------------GC---------------ACA-----------TGCAAAACAAGTTAATCGGGCCTCTC---GGCTAAGCGCTTGACTGA------------TA-----ATT---GATAAAACCAAAATTGACAGGTACTCCAACGAATACATTCACATTATTTATAGCTTATTTTGACAAATTATTAATATTGAAGAAATAA-T--TCAAAAAAATA-AAAGTGGGTACTTTCTT-TTTTGGCTCAGTGTACATAg
gi|10 : GGTCTTTATTTAGT-----CTTGGCATTGCAACTTGACTTGATATTATGTGATATTTTTGTATTG-TGCCTAATTTCTGGTCAGTAAGTGCAGTCAGATACCACCACCGGATATCGACCGTAGCTGCACGGAGCGCACGTGAAAAACAAGTTAATCGGGCCTCTCGGC---------------TAA------------GCG-------------------CTT---GACT------------GA------------TT-----ATT---GATTAAATCAACTTTGACAGGTACTCCAACGAATACATGTACATTATTTATAGTT--TTTTGACAAATTATTCATGTTGAGGAAATAA-T--T-CAAAAAA-T-ACTGTGGATACTTTCTT-TTTTGGCTCAGTAcat
gi|21 : GTCGTTATTTAGT-----CTTGGCATTGCAATTTGACTTGATTTTATGTGATATTTTTGTAattta
gi|12 : ATTGTGCCTAATTTCTGGTCGATAAGTGCAGCCATATACCACCACCGGATATCAACCATCGCT---------GCACG--------GAGC---------------GCACGTG----------CAA-----------AACAGGTTAATCAGGCCT-----CTC---GGCT------------AAGCGC--------TTGGCTGATTATTGATAAAACCAACTTTGACAGGTACTCCAACGAATACATGTACACTATTTATAGCTTATTTTGACAAATTATTAAAATtt
gi|14 : CTAATTTCTTGTCAATAAGTGCCGTCATATACCACCACCTGATATCGACCGTCGCT---------GCACG--------GAGC---------------GCACTTGCAAAACAAGTTAA-----------T-CGGGCCT--------------CTC---GGCT------------AAGCGCTTGGCTGATT-----ATT---GATAAAACAAACTTTGACAGGTACTCCAACGAAAACATGTACATTATTTAT
gi|20 : TATAGCTTATTTTGACAAATTATTAATATTGAGGAAATAA-T--T-AAAAAAATA-GAAGTGGGTACTTTCTT-TTTTGGCTCAGTATATA
gi|3 : tgATAA-TGAT-AGATAAATATAGAGTAGGTATTTTCTT-TTTTGGCTTAGTATa
gi|4 : ATAA-TGAT-AGATATA-T-AGAGTGGGTACTTTCTT-TTTTGGCTCAATaaagaaaaggagtacccattcggatttaattttttaattgaagtaaagaacaatttatttttgaagtcctttgaaaatttgaagcagctgcaatatgtcttcatcgaaaaaaaaatagaccgatatgacgtaggggtcgatttccgaagtaaaaacggttttgataaatctacacttgtaatcgggaaagtttaaatttcaatattatgggatttttctgcagtgaaaatgtgatgtgggttgcagtaaaaggtttaatatctcatgtgtccgccgtgttgcccaatgcacgtcatgatctgccgtcgcatgctgtcgacgtaacgctgtacgtacggcgccggtaaattgtcccattcagcctgtagggctgctgaaaggtcctgcaccgtgttggttgcataatttgttctaacannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncataagtatgacgtccggtccgtggcgctgataaaagaaataacttctggttcaagaacattattgacgtatgtctgggcattgatgtttccttcaataacgataaggcgggtcttgtgtacatccataattccaccccagaagaacatcccccaaagaggtctctctcaatgacgcacgcatcagcgtaacgctccccccgacgacggtaaattctctaacgtctgtcggcgtcactctaattgaatcgagactcgtccgaaaacaatactgatctccaatcagtacgtcggaaacgccggcgacgtcggcaccagtcgagtctcgc
gi|11 : ATAA-TGAT-AGATATA-T-AGAGTGGGTACTTTCTTTTTTTGGTTCAGTATAaaagaaaaggagtaaacattcggatttaattttttaattgaagtaaaaaacaatttattcttgaagtcctacgaaaatttgaaacagctgcaatatgtctttcatcgaatggaccggtatgacgtaactgtcgatttccgaagtaataacggttttgataaatctgcacttgtattcgggaaagtttaaaactcaattttatgggatttttctgcagtgaaaatgtgatgtgggttgcagtataagatttaatatctcattttcccgccatgttgctcaatgtacgttatgatccgccgtcgtatgctgtcgacgtaacgctgtacgtacggcgccggtaaatagtcccattcagccagtagggctgctgaaaggtcctgcgccgtgttgattgcatattttgttctaacannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnacaacttctggttcaagaacattattgacgtaggtctggtcattgatgtttcattcaataacgataagtcgggtcttgtgtacatccataattccatcccagactaatactgaatctcccccaaagcggtctctgtcaatgacgcacgcatcagcgtaacgctccccccgacgacggtaaattctcttacgtccaccggcatgactcaaattgaatcgaccctagtccgaaaacaatactgatctccaatcagcaggtcggaaacgccgg
gi|1 : -AGAGTGGGTACTTTCTT-TTTTGGCTCAGTaaagaaaaagagtacacatttggatttaatttttaattgaagtaaagaacaatttatttttgaagtcctgtgaaaatttgaagcagctgcaatatgtctttcatcgaaaaaatggaccgaaatgacgtaagggtcgatttccgaagtacgacggttttgatcaatctgcacttgtaatcgggaaagtttaaaaatctcagttt
4 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|13 ): CTGCATTAAGGTTGCCCGGCTTGTCCATTATGCCCGCCCAAACCATGACGCTACCACCTTCAAACCTGTCTCGTTCCTGCAAGCAGCATTGGGCAAATCTCTCGTTCCGTCGCCTGTAAACTCTGACCCTACCGTCAGCAAAGCTGACCATGAAGCGTGACTCATCGGTAAAA
Unaligned ( gi|16 ): CTGTCTCGTTCCTGCACGCAGCATTGGGCAAATCTCTCGTTCCGTCGCCTGTAAACTCTGACCCTATCATCAGCAAAGCTGACCATGAAGCGTGACTCATCGGTAAAAATCACGTT
Unaligned ( gi|18 ): AATTGTTCCCCTTTACGTCTATATACCCGTTCCCGCCTGTCAGCGTGGCTAAGGTTAAACTTTGATTCATCAGCAGAGAGAACGTGATTCCAGTCTGCTCTTCTTAA
Unaligned ( gi|19 ): TGTTCTTCTCAACAATGCAACAATCGGCGAATCTTTCATTTTTACGCCTGTATACCCATAATCTTCCGTCAGCATGACTTACTGTGAACCGAGATTCATC
Alignments
lowQualScore : 1111111111111111111111111111111111111 11111111111111111111111111111111111111
lowQualScore : 111 1111 111 222222222222222 2222 333333333 11 22 7777777777777777 444444 2222 4444444444444444444444444444444444444 111 1111 88888888888888888 66666666 66666666666666666666666666666666666666 44 1
lowQualScore : 99 2 1 2 99 3 99 8 8 0 3 99 1 6 6 3 111 1 6 6 6666 1 99 8 1 1 00 6 0 0 0 2 3 0 0 0 1 3 5 0 5 222 3 4 6 3 66 777 777777777777777 4 0 1 8888 7 2 1 5 2 2 5 66 7 1 6 8 222222222 11 3 8 22 2 2 1 1 22 2 55 9999999999999999 6 2 000000 1 2 1 2 1 1111 22 4444444444444444444444444444444444444 777 7777 0 11111111111111111 0 2 0 0 2 3 44 33333333 3 1 88888888888888888888888888888888888888 3 22 3 1 4 4 6
lowQualScore : .. . . . .. . .. . . . . .. . . . . ... . . . .... . .. . . . .. . . . . . . . . . . . . . . ... . . . . .. ... ............... . . . .... . . . . . . . .. . . . . ......... .. . . .. . . . . .. . .. ................ . . ...... . . . . . .... .. ..................................... ... .... . ................. . . . . . . .. ........ . . ...................................... . .. . . . . .
lowQualScore : 22 2 0 5 22 5 22 0 0 8 8 66 4 7 7 2 777 0 7 7 3333 0 22 0 8 0 33 7 2 2 2 5 5 3 6 7 0 0 7 3 7 777 2 3 9 4 11 888 888888888888888 4 2 0 1111 6 5 4 0 8 5 7 44 9 0 4 0 000000000 00 2 0 55 0 5 0 0 00 0 22 0000000000000000 5 5 000000 0 5 0 5 0 2222 00 5555555555555555555555555555555555555 555 2222 8 00000000000000000 2 5 2 2 5 2 55 33333333 0 0 00000000000000000000000000000000000000 2 77 3 0 0 8 7
consensus : CAAAAAAGAAAGTACCCACTCTATAT--ATCTATCATTATAAAGAAAAGGAGTATACATTCGGATTTAATTTTTTAATTGAAGTAAAGAACAATTTATTCTTGAAGTCCTGTGAAAATTTGAAGCAGCTGCAATATGTCTTTCATCGAAAAAAA--TGGACCGATATGACGTAGGGGTCGATTTCCGAAGTAACAACGGTTTTGATAAATCTGCACTTGTAATCGGGAAAGTTTAAAA--CTCAATTTT-ATGGGATTTTTCTGCAGTGAAAATGTG-ATGTGGGTTGCAGTAAAAGATTTAATATCTCATGTGTCCGCCGTGTTGCCCAATGCACGTCATG-ATCCGCCGTCGCATGCTGTCGACGTAACG-CTGTACGTA---CGGCGCCGGTAAAT-TGTCCCATTCA-GCCTG-TAGGGCTGCTGAAAGGTCCTGCACCGTGTTGAT--TGCATAATTTGTTCTAACACGGCG-TCCTAACTCATCCCATATGTGTTCGATGGGATTTAAGTCAGGACTATTCGCCGGCCAGTCTAAAACATTGACGTTATTATCCGCCAAAAAACGTCGAGTAA-GTGCAGCTGTATGGGGACGGGCGTTATCATGCATAAGTGTGACGTTCGGTCCGTGGCGCTGAATAAAAGGAACAACTTCTGGTTCAAGAACATTATTGACGTAGGTCTGGGCATTGATGTTTCCTTCAATAACGATTAGGCGGGTCTTGTGTA-CATCCATAATTCCA-CCCCAGACTA--ATACTGAACCTCCCCCAAAGCGGTCTCTCTCAACGACGCACGCATCGGCGNAACGCT--C---CCCC---------------C-GACGACGGTANATTC-T--TCTCACGTCCGTCGGCATGACTCAAAT-TGAACCGAGACTCGTCCGAAAACAATAC-T-GATCTCCAATCAGCACGTCGGAAACGCCGGCGACGTC-GGC---------ACC--AGTCGAGTCTCGC-A-CCCGATGACGTCTGGTTAAAATTTGGCCAAAGTATG-TCTG-----TACGNACGAATCGGG--T-GGCATTTTGTCGCAATCGATTCC----GAACTGT-------CCG--------ATT--ATGCCG---TC---CTGTTGCTGATGCCGACAG---ACGTCGGTTACGTAAGTGTTGAACCGTGA-TGT--ACC-ATCATCGGCCGCAGTCGTCACACGTGGCCGACCGCTTCGGGGACGGTCCCAAACGTTTCCCCTGATCTGGAAACGTCTTCGCAAACGCTCAATTGTCTTCCTCGTGCAGCCGAACAGCCGGGATACTTCGGCTACTGTAGAGCCAGCATTCAGCGTCCCGATCGCCTGATTTCTTTGGTCGTTATTTAGT----CTTGGCATTGCAATTTGACTTGATTTTATGTGATNTTTTTGTATTGTGCCTAATTTCTGGTCAATAAGTGCAGTCAGATACCACCACCGGATATCGACCGTCGCTGCACGGAGCGCACGTG-----C--AA--CAAGTTAATCGGG-----C-----CTCTCGGCTAAGCGCTTGGCTGATTATTGATAAAACCAACTTTGACAGGTACTCCAACGAATACATGTACATTATTTATAGCTTATTTTGACAAATTATTAATATTGAGGAAATAAT--TAAAAAAATAAAAGTGGGTACTTTC-TTTTTTGGCTCAGTATATATA
Reference ( family-2173 ) : CAAAAAAGAAAGTACCCACTCTATAT--ATCTATCATTATAAAGAAAAGGAGTACACATTCGGATTTAATTTTTTAATTGAAGTAAAGAACAATTTATTCTTGAAGTCCTGTGAAAATTTGAAGCAGCTGCAATATGTCTTTCATCGAAAAAAA--TGGACCGATATGACGTAGGGGTCGATTTCCGAAGTAACAACGGTTTTGATAAATCTGCACTTGTAATCGGGAAAGTTTAAAA--CTCAATTTT-ATGGGATTTTTCTGCAGTGAAAATGTG-ATGTGGGTTGCAGTAAAAGATTTAATATCTCATNTGCCCGCCGTGTTGCCCAATGCACGTCATG-ATCCGCCGTCGCATGCTGTCGACGTAACG-CTGTACGTA---CGGCGCCGGTAAAT-TGTCCCATTCA-GCCGG-TAGGGCTGCTGAAAGGTCCTGCACCGTGTTGAT--TGCATAATTTGTTCTAACACGGCG-TCCTAACTCGTCCCATATGTGTTCGATGGGATTTAAGTCAGGACTATTCGCCGGCCAGTCNAAAACATTGACGTTATTATCCGCCAAGAAACGTCGAGTAA-GTGCAGCTGTATGGGGACGGGCGTTATCATGCATAAGTGTGACGTTCGGTCCGTGGCGCTGAATAAAAGGAACAACTTCTGGTTCAAGAACATTATTGACGTAGGTCTGGGCATTGATGTTTCCTTCAATAACGATNAGGCGGGTCTTGTGTA-CATCCATAATTCCA-CCCCAGACTA--ATACTGAACCTCCCCCAAAGCGGTCTCTCTCAATGACGCACGCATCAGCGTAACGCT--C---CCCC---------------C-GACGACGGTANATTC----TCTCACGTCCGTCGGCATGACTCAAAT-TGAATCGAGACTCGTCCGAAAACAATAC-T-GATCTCCAATCAGCACGTCGGAAACGCCGGCGACGTC-GGC---------ACC--AGTCGAGTCTCGC-A-CCCGACGACGTCTNGTNANNATTTGGCCGAAATACG----G-----TA-GGACGAATCGGG--T-GGCATTNTGTCGCANTCGNTTCC----GNNCTGT-------CCG--------AT---ATGCC----TC---CTGTTGCTGATGCCGACAG---ACGTCGGTTACGTAAGTGTTGAACCGTGAGTGTTGACCGATCATCGGCCGCAGTCGTCACACGTGGCCGACCGCTTCGGGGACGGTCCCAAACGTTTCCCCTGATCTGGAAACGTCTTCGCAAACGCTCAATTGTCTTCCTCGTGCAGCCGAACAGCCGGGATACTTCGGCTACTGTAGAGCCAGCATTCAGCGTCCCGATCGCCTGATTTCTTTGGTCGTTATTTAGTCTTGCTTGGCATTGCAATTTGACTTGATTTTATGTGATATTTTTGTATTGTGCCTAATTTCTGGTCAATAAGTGCAGTCAGATACCACCACCGGATATCGACCGTCGCTGCACGGAGCGCACGTG-----C--AA--CG-------CGGG-----CAA---C-CTCGGCTAAGCGCTTGGCTGATTATTGATAAAACCAACTTTGACAGGTACTCCAACGAATACATGTACATTATTTATAGCTTATTTTGACAAATTATTAATATTGAGGAAATAATGATAGANAAATNAGAGTGGGTACTTTC-TTTTTTGGCTCAGTATATATA
gi|1 : CAAAAAAGAAAGTACCCACTCTATAT--ATATATCATTATAAAGAACATGAGTATACATTCGGATTTAATTTTT-AATTTAAGTCAAGAACAATTTATTCTTGAAGTCCTGTGAAAATTTGAAGCAGCTGCAATATATCTTTCATGGAAAAAAA--TGGACCGATATGACGTAGGGGTCGATTTTCGAAGTAACAACGGTTTTGATAAATCTGCACTTGTAATCGGGAAAGTTTAAAA--CTCAA-TTT-ATGGGATTCTTCTGCAGTGAAAATGTGAATGTGGGTTGCAGTAAAAGATTTAATATCTCATGTGTCCGCCATGTTGCCCAATGCACGTCATG-ATCCACCGTCGCATGCTGTCGACGTA------------A---CGGCGCCGGTAAAT-TGTCCAATTTA-GCCTG-AAGGGCTGCTGAAAGGTCCTGCACCGTGTTGAT--TGCATAATTTGGTCTAACACGGCG-TCCTAACTCATCCCATATGTGTTCGATGGGATTTAAGTCAGGACTATTCGCCAGCCAGTCTAAAACATTGACTTTATTATCCGCCAAGAAACGTCGAGTAA-GTGCAGCTGTATGGGGACGGGTGTTATCATGCATAAGTGTGAAGATGTGTCCTTGACGCTGAATAAAATGAACAACTTCTGGTTCAAGAACATTATTGACGTAGGTATGGACATTGATGTTTCCTTCAATAACGATTAGGCGGGTCATGTAAA-CATCCATAATTCCA-CCCAAGACTA--ATACTGAACCTCCCCAAAAGGGGTCTCTCTCAATGGCGCACGCATCAGCGAAACGCC--CACGCCCCCCCCCCCCCCCCCCAC-GACGACGGTAGATTA----TCTCACGTCTATCGGCATGAATCAAAT-TGAA---A---TCGTCCGAAAACAATAC-T-------------GCACGTCGGAAACGCCAGCGACGTC-GGT---------ACC--AGTCGAGTCTCGCAA-CCCGATGACGTCTTGTTAAAATTTGGCCAACGTACGTTCTG-----TACGGACAAATCGGG--T---CATTTTGTCGCAATCGGTTCC----GAACTGTCTGTGCACTG--------ATTAAATGCCGTCGCC---CTGTTGCTGATGCCGACAG---ACGTCGGTTACGTAAGTGTTGA-----------------ATTATCGGCCGCAGTCGTCACACGTGGCTGACCGCTTCGGGGACGGTCCCAAACGTTTCCCGTCATCTGAAAACGTCTTCGCAAACGCTCAATTATCTTCCTCGTGCAGCCGAACA----------TT---------------CAGCAT-------CCCGATCGCCTGATTTCTTTGGTCGTTACTTAGT----CTTGGCATTGCAATTTGACGTGATTTTATGTGATCTTTTTGTATAATGCCAAATTTCTGGTCAATAAGTGCAGTCAGATACCACCACCTGATATCGACCGTCGCTGCACGGAGTGCACGTG-----CAAAA--CAAGTTAATCGGG-----CCT---C-C-CGGCTAAGCGCTTGGCTGATTATTGATAAAACCAACTTTGACAGGTACTCTTACGAATACATGTACATTAATTATAGCTTATTTTGACAAATTGTTGATATTGAGGAAATAAT--TTAAAAAATAAAAGGGGGTACTTTC-TTTTTTGTCTCAGTGTAT
gi|10 : actgagcGGTCTTTATTTAGTCTTG----GCATTGCAACTTGACTTGATATTATGTGATATTTTTGTATTGTGCCTAATTTCTGGTCAGTAAGTGCAGTCAGATACCACCACCGGATATCGACCGTAGCTGCACGGAGCGCACGTGAAAAAC--AA---GTTAAT--CGGG-----C-----CTCTCGGCTAAGCGCTTGACTGATTATTGATTAAATCAACTTTGACAGGTACTCCAACGAATACATGTACATTATTTATAGTT--TTTTGACAAATTATTCATGTTGAGGAAATAAT--TCAAAAAAT-ACTGTGGATACTTTC-TTTTTTGGCTCAGTAt
gi|11 : ATAATGATAGATATAT-AGAGTGGGTACTTTCTTTTTTTGGTTCAGTATAattta
gi|11 : AAAAAAGAAAGTACCCACTCTATAT--ATCTATCATTATAAAGAAAAAGAGTACACATTTGGATTTAATTTT-TAATTGAAGTAAAGAACAATTTATTTTTGAAGTCCTGTGAAAATTTGAAGCAGCTGCAATATGTCTTTCATCG-AAAAAA--TGGACCGAAATGACGTAAGGGTCGATTTCCGAAGT-ACGACGGTTTTGATCAATCTGCACTTGTAATCGGGAAAGTTTAAAAATCTCAGTTTaaagaaaaagagtacacatttggatttaatttttaattgaagtaaagaacaatttatttttgaagtcctgtgaaaatttgaagcagctgcaatatgtctttcatcgaaaaaatggaccgaaatgacgtaagggtcgatttccgaagtacgacggttttgatcaatctgcacttgtaatcgggaaagtttaaaaatctcagttt
gi|12 : tatactgaaccaATTGTGCCTAATTTCTGGTCGATAAGTGCAGCCATATACCACCACCGGATATCAACCATCGCTGCACGGAGCGCACGTG-----C--AA--AA-------CAGGTTAATCAGGCCT-CTCGGCTAAGCGCTTGGCTGATTATTGATAAAACCAACTTTGACAGGTACTCCAACGAATACATGTACACTATTTATAGCTTATTTTGACAAATTATTAAAAT
gi|14 : CTAATTTCTTGTCAATAAGTGCCGTCATATACCACCACCTGATATCGACCGTCGCTGCACGGAGCGCACTTG-----C--AAAACAAGTTAATCGGG-----C-----CTCTCGGCTAAGCGCTTGGCTGATTATTGATAAAACAAACTTTGACAGGTACTCCAACGAAAACATGTACATTATTTAT
gi|15 : TCT-TCTCAACAATGCAACAATCGGCGAATCTTT--C---ATTT---------------T-TACGCCTGTATACCCGTAATCT----TCCGTCAGCATGACT-AACTGTGAACCGAGATTCATCAGTGAACAAAAC-TCGGT-TCCA
gi|17 : ctgtTAAATGGAATGACTTCAGCATCTAAAACCTCATCAATGTTCCTCTGAGCATTCAAATTCCCACGAATGACAAAGAGTCAGGTCTTTTGTC-CCCCCATGATCCCA-CCCCg
gi|19 : TCT-TCTCAACAATGCAACAATCGGCGAATCTTT--C---ATTT---------------T-TACGCCTGTATACCCATAATCT----TCCGTCAGCATGACTTACTG-TGAACCGAGATTCATCgaatct
gi|2 : tgtCAAAAAAGAAAGTACTCACTCTATAT--ATCTATCATTATAAAGAAAAGGTGTATACATTCGGATTTAATTTTTTAATTGAAGTAAAGAACAATTTATTCTTGAAATCCTGT-AAAATTTGAAGCTGCTGCAATATGTCTTTCATCTAAAAAAA--TGGACCGATATTACGTAGGGGTCGATTTGC-AAGTTACAACGGTTTTGATAAATCTGCACTTGTAATCGGGAAAGTTTAAAA--CATGATTTTCATGGGATTTTTCTGCAGTGAAAATGTG-ATGTAGGTTGCAGTAAAAGATTTAATATCTC---T--------TGTTGCCCAATGCACGTCATG-ATCCGCCATTGCATGCTGTCGACGTAACG-CTATACGTA---CGGCACCAGTATAT-TGTCACATTCA-GTCTTCTAGGGCTGCTGAAAGGTCCTGCACCGTGTTGAT--TGCATAATTTGTTCTAACACGGCG-TCCTAACTCATCTCATATGTATTTGATGGGATTTAAGTCAGGACTATTCACTGGCCAATCTAAAACATTGACGTTATTATCCGCCAAAAAACATCGAGTAA-GTGCAGCTGTATGGGGACGGGCGTTATCATTCATAAGTGTGACGTTCGGTCCGTGGCGCTGAATAAAAGAAACAACTTCTGGCTCAAGAACATTATTGACGTAGGTCTGGGCATTAATGTTTCCTTCAATAATGATTAGGAGGGTCTTGTGTA-CACCCATAATTCCACCCCCAGACTA--ATACTGAACCTCCCCCAAAGCGGTCTCTCTCAATGACGCACGCATCAGCATAACACT--T---CCCC---------------C-GACAACGGTAAATTC----TCTCACGTGCGTCGGCATGACTCAAAT-TGAATCGAGACTTGTACGAAAACAATAC-T-GATCTCCAATCAGCTTGT-GGAAACGCCGGCAACGTC-GGC---------ACC--AGTCGAGTCTCGC-AGCCCGATGACGTCTGGTTAAAATTTGGCCAAAGTATGGTCTG-----TACAGATGAATCGGG--TCAACATTTTGTCGCAATCGATTCC----GAACTGT-------CTG--------ATTCCATGCCG---TCACTCTGTTGCTGATGCCAACAG---ATATC-------------TTGAACCATGA-TGT--ACCTATCATCGGCCTCAGTCGTCACATGCGGCAGACCGCTTCGGGGACGGTCCCAAGCGTTTCCCCTGATCTGGAAACATCTTCACAAACACTCAGTTGTCTTCCTCGTGCAGCCGAACAGCCAGGATACTTCGGCTACTGTAGAGCCAGCATTCAGCGTCCCGATTGCCTGATTTCTTTGGTCATTAATTAGT---------CATTGCAATTTGACTTGATTTTTTGTAATCTTTTTGTAATTTGCCTAATTTCTGGTGAGTAAGTGCAGTCAGATATCACCACAGGATATCGACCGTCGCTGCACGGAGTGC----------C--AA--T----------------------------------GCGCTTGGCTGATTATTGATAAAACCAACTTTGACAGGTACTCCAACGAATACATGTACATTATTTATAGCTTATTTTCACAAATTATTAATATTGAGGAAATAAT--TAAAAAAA-AAAAGTGGGTACTTTC-TTTTTTGGCTCAGTATATATA
gi|20 : TATAGCTTATTTTGACAAATTATTAATATTGAGGAAATAAT--TAAAAAAATAGAAGTGGGTACTTTC-TTTTTTGGCTCAGTATATA
gi|21 : tgGTCGTTATTTAGTCTTG----GCATTGCAATTTGACTTGATTTTATGTGATATTTTTGTATTa
gi|3 : CAAAAAAGAAAATACCTACTCTATATTTATCTATCATTATAAAGAAAAGGAGTACCCATTCGGATTTAATTTTTTAATTGAAGTAAAGAACAATTTATTTTTGAAGTCCTTTGAAAATTTGAAGCAGCTGCAATATGTCTT-CATCGAAAAAAAAATAGACCGATATGACGTAGGGGTCGATTTCCGAAGTAAAAACGGTTTTGATAAATCTACACTTGTAATCGGGAAAGTTTAAAT--TTCAATATT-ATGGGATTTTTCTGCAGTGAAAATGTG-ATGTGGGTTGCAGTAAAAGGTTTAATATCTCATGTGTCCGCCGTGTTGCCCAATGCACGTCATG-ATCTGCCGTCGCATGCTGTCGACGTAACG-CTGTACGTA---CGGCGCCGGTAAAT-TGTCCCATTCA-GCCTG-TAGGGCTGCTGAAAGGTCCTGCACCGTGTTGGT--TGCATAATTTGTTCTAACANNNNN-NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCATAAGTATGACGTCCGGTCCGTGGCGCTG-ATAAAAGAAATAACTTCTGGTTCAAGAACATTATTGACGTATGTCTGGGCATTGATGTTTCCTTCAATAACGATAAGGCGGGTCTTGTGTA-CATCCATAATTCCA-CCCCAGA--A-------GAACATCCCCCAAAGAGGTCTCTCTCAATGACGCACGCATCAGCGTAACGCT--C---CCCC---------------C-GACGACGGTAAATTC----TCTAACGTCTGTCGGCGTCACTCTAAT-TGAATCGAGACTCGTCCGAAAACAATAC-T-GATCTCCAATCAGTACGTCGGAAACGCCGGCGACGTC-GGC---------ACC--AGTCGAGTCTCGC-
gi|4 : atactaagcCAAAAAAGAAAGTACCCACTCTATAT--ATCTATCATTATAAAGAAAAGGAGTAAACATTCGGATTTAATTTTTTAATTGAAGTAAAAAACAATTTATTCTTGAAGTCCTACGAAAATTTGAAACAGCTGCAATATGTCTTTCATCGAA-------TGGACCGGTATGACGTAACTGTCGATTTCCGAAGTAATAACGGTTTTGATAAATCTGCACTTGTATTCGGGAAAGTTTAAAA--CTCAATTTT-ATGGGATTTTTCTGCAGTGAAAATGTG-ATGTGGGTTGCAGTATAAGATTTAATATCTCATTTTCCCGCCATGTTGCTCAATGTACGTTATG-ATCCGCCGTCGTATGCTGTCGACGTAACG-CTGTACGTA---CGGCGCCGGTAAAT-AGTCCCATTCA-GCCAG-TAGGGCTGCTGAAAGGTCCTGCGCCGTGTTGAT--TGCATATTTTGTTCTAACA
gi|5 : attgagcTCCTTTACCGTGTTGAT--TTCATAATTTGTTCTAACACGGCA-TCCTAACTGATCCTATATGTGATCGATGGGATTTAAGTCAGGACTATTCGCCGGCCAGTCTAAAATATTGACGTTATTATCCGCCAAAAAACGTCGAGTAA-GTGCAGCTGTATGGGGACGGGCGTTATCATGCATAAGTGTGACGTTCGGTCCGTGGCGATGAATAAAAGGAACAACTTCTGGTTCAAGAACATTATTGACGTAGGTCTGTGCATTGATGTTTCCTCCAATAACGATTAGGCGGGTCTTGTGTA-CATCCATAATGCCA-CCCCAGACTA--TTACTGAACCTCCCCCAAAGCGGTCTCTCTCAATGACGCACGCATCAGCGTAACGCT--C---CCCC---------------C-GACGACGGTATATTC----TCTCACGTCCATCGGCATGACTCAAAT-TGAATCGAGACTCGTCCGAAAACAATAC-T-GATCTCCAATCAGCACGTCGGAAACGCC--TGACGTCTGGTTAAAATTTGGCCAAAGTACAGTCT-GT-A--CGGACGA-ATCTGGTCATCATTTTGTCGCAAT-TG----G-----T---TCCGAACTG-----------TCTGT-GCACT-GATTCC----ATGCTGT-------C-----------------GC------C---CTGTTGCTGATGCCGACAG---ACGTCGGTTACGTAAGTGTTGAACCGTGA-TGT--ACCGATCATCGACCGCAGTCGTCACACATGACCGACCGCTTCGGGGACGGTCCCAAACGTTTCCCCTGATCTGGAAACGTCTTCGCAAACGCTCAATTGTCTTCCTCGTGCAGCCGAACAGCCGGGATACTTCGGCTACTGTAGAGCCAGAATTCAGCATCCCGATCGCCTGATTTCTTTGGTCGTTATTTAGT----CTTGACATTGCAATTTGATTTGATTTTATGTGATCTTTTTGTATTGTnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnacaacttctggttcaagaacattattgacgtaggtctggtcattgatgtttcattcaataacgataagtcgggtcttgtgtacatccataattccatcccagactaatactgaatctcccccaaagcggtctctgtcaatgacgcacgcatcagcgtaacgctccccccgacgacggtaaattctcttacgtccaccggcatgactcaaattgaatcgaccctagtccgaaaacaatactgatctccaatcagcaggtcggaaacgccgg
gi|6 : AATGCATG-CACGCATTCTTCGTCTCATACTCCTAACGTAAGGTCTG-ATGTAAGCTGGTGCC----AATGTATTCCACTCACGCTGA--AGAGCTGCAGCTAGGT--TG-ACTGTGTTGATGTTGCC--ATTTTTTCGAACACAATGGTCCTAATTCGTTCCAATTATGTTCAATGGGAGACGAGTCTGGACTGTTGGCTGGCCAGTTCAACAGATTAACGTTGTTCTGCGCAAGAAAATGACGAGTAACGT-TAGCCGTAT--GAAC--------TCTTAC----GTCTGCAGCT-AGCCCATGTTGTTGTATAAATGGTAGTGCCTCTGGAACAAGGATCTGGTTGATATACGCCTGTACAGTCACGTTGCCATTGACTGTAGTTAGTCGTTGCCCGT-TACCGTCCATTATACCT-CACCATACAAGCACACT--ACCACCACCAAAATGATCTCTTTCCAAAATGCAAGCATCCGCG-AATTGT--C---CCCT---------------T-TACGTCTGTATACCCGT--TCCCAC--CCATCAGCGTGGCTATGAT-TTAAC-----TTCATCAGTAAAGAGAACAT-GAT-TCCAGTCTGCTCTTTTAAAATGCAAGTGGCGTC-TGC---------ACC--AATTAACTTGTGC-ATCTCGATGACGTTGAGTAAGGATCTGCCCAAAATATG----GAAGATTG-GCGCGAAT-GGGTCT-GGCATTGAATCTCAGTCTCTTCCTCATGGTTTGT-------CCGGAAATACCAT---AT-CT----TCTAGCTGTTACTGTCGCTGGGAGAAAATGTCG---ACGTAGGTGTatagc
gi|7 : taggacctgatgagtcctccattctaattACGTGGCCGACCGCTTTGAGGACGGTCCCAAACGTTTCCCCTGGTCTGGAAACGTCTTCGCTAACGCTCAATTGTCTTCCTCGTGCAGCCACACAGCCGGAATACTTCGGCTACTGTAGAGCCAGCATTCAGTATCCCGATCGCCTGATTTTTTTGGTCGTTATTTAGT----CTTGGTATTGCAGTTTGACTTGATTTTATGTGATATTTTTGTATTGTGTCTAATTTCTGGTCAACAAGTGCAGTCAGATACCACCACCGGATATCGACCGTCGCTGCACGGAGCGCACATG-----CAAAA--CAAGTTAATCGGG-----C-----CTCTCGGCTAAGCGCTTGACTGATAATTGATAAAACCAAAATTGACAGGTACTCCAACGAATACATTCACATTATTTATAGCTTATTTTGACAAATTATTAATATTGAAGAAATAATT-CAAAAAAATAAAAGTGGGTACTTTC-TTTTTTGGCTCAGTGTACATA
gi|8 : AAAAAAAAACTATCCACTCTATAT--ATCTATCATTATAAAGAAAAGGAGTATACATTCGGATTTAATTTTTTAACTGAAGTAAAGAACAATTTATTCTTAAAGT-----------TTGAAGCAGCTGCAATATGTCTTTCATCGAAAAAAA--TGGACCGATATGACGTAGGGGTCGATTTCCGAAGTAACAACGGTTTTGATGAATCTGCACTTGTAAGCGGGAAAGTTTAAAA--CTCAATTTT-ATGGGATTTTTTTGAAGTGAATATGTG-ATGTGGGTTGCAGTAAAAGATTTAATATCTCATGTGTCCGCCGTGTTGCCCAATGCACGTCATG-ATCCGCCGTCGCATACTGTCGACGTAACG-CTGTACGTA---CGGCACCGGTAAAT-TGTCCCATTCA-GCCTG-TAGGGCTGCTGAAAGGTCCTGcat
gi|9 : actgagtTCAGTACTATTCTTTGGCCAGTCATAAACATTGACGTTATTATCCG---AGAAACGTCGAGTAA-GTGCAGCTGTATGGGGACGGGCGTTATCATGCATAAGTGTGACGTTCGGTCCGTGGCGCTGAATAAAAGAAACCACTTCTGGTTCAAGAACATTTCTGACGTAGGTCTAGGCATTGATGTTTCCTTCAATAACGATTAGGCGGGTCTTGTTTA-CATCCATAATTCCA-CCCCAGACTA--ATACTGCAC
gi|9 : ACGCACGCATCAGCGTAACACCGAC---CCCC---------------C-gcacgcatcagcgtaacaccgaccccccccccccccccccccccccctcccccctgacgatggtaaattctcttacgtccgtcgcatgactcaaattgaatcgatactcgtccgaaaacaatactcatctccaatcagcacgtcggaaac
gi|9 : tcagtactattctttggccagtcataaacattgacgttattatccgagaaacgtcgagtaagtgcagctgtatggggacgggcgttatcatgcataagtgtgacgttcggtccgtggcgctgaataaaagaaaccacttctggttcaagaacatttctgacgtaggtctaggcattgatgtttccttcaataacgattaggcgggtcttgtttacatccataattccaccccagactaatactgcCT--C---CCCC---------------CTGACGATGGTAAATTC----TCTTACGTCCGTCG-CATGACTCAAAT-TGAATCGATACTCGTCCGAAAACAATAC-T-CATCTCCAATCAGCACGTCGGAAACccccccccccccccccccctcccccctgacgatggtaaattctcttacgtccgtcgcatgactcaaattgaatcgatactcgtccgaaaacaatactcatctccaatcagcacgtcggaaac
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|13 ): CTGCATTAAGGTTGCCCGGCTTGTCCATTATGCCCGCCCAAACCATGACGCTACCACCTTCAAACCTGTCTCGTTCCTGCAAGCAGCATTGGGCAAATCTCTCGTTCCGTCGCCTGTAAACTCTGACCCTACCGTCAGCAAAGCTGACCATGAAGCGTGACTCATCGGTAAAA
Unaligned ( gi|16 ): CTGTCTCGTTCCTGCACGCAGCATTGGGCAAATCTCTCGTTCCGTCGCCTGTAAACTCTGACCCTATCATCAGCAAAGCTGACCATGAAGCGTGACTCATCGGTAAAAATCACGTT
Unaligned ( gi|18 ): AATTGTTCCCCTTTACGTCTATATACCCGTTCCCGCCTGTCAGCGTGGCTAAGGTTAAACTTTGATTCATCAGCAGAGAGAACGTGATTCCAGTCTGCTCTTCTTAA
Alignments
lowQualScore : 1111111111111111111111111111111111111
lowQualScore : 111 222222222222222 44444 222 1 3333333333 444444 2222 0000000000000000000000000000000000000 111 1111 2 222222222
lowQualScore : 99 0 1 2 99 3 99 8 8 2 6 6 3 111 1 6 6 1 99 8 00 6 0 0 0 2 3 0 1 5 5 999 1 2 3 3 1 0 777 777777777777777 4 1 00000 7 1 0 0 4 4 3 5 5 5 3 3 3 0 555 0 0 1 7 2 0 7777777777 1 2 111111 4 1111 4444444444444444444444444444444444444 777 7777 0 7777 6 0 2 0 0 2 3 44 1 1 222222222 1 6 6 6
lowQualScore : .. . . . .. . .. . . . . . . ... . . . . .. . .. . . . . . . . . . . ... . . . . . . ... ............... . . ..... . . . . . . . . . . . . . . ... . . . . . . .......... . . ...... . .... ..................................... ... .... . .... . . . . . . . .. . . ......... . . . .
lowQualScore : 22 3 0 5 22 5 22 0 0 2 7 7 2 777 0 7 7 0 22 0 33 7 2 2 2 5 5 5 4 0 0 666 0 5 1 1 0 8 888 888888888888888 4 0 22222 4 1 9 1 4 4 9 0 0 6 7 2 2 6 000 2 2 2 0 5 0 2222222222 0 5 888888 5 2222 8888888888888888888888888888888888888 555 2222 8 7777 7 2 5 2 2 5 2 55 0 0 000000000 7 7 7 7
consensus : CAAAAAAGAAAGTACCCACTCTATAT--ATCTATCATTATAAAGAAAAGGAGTATACATTCGGATTTAATTTTTTAATTGAAGTAAAGAACAATTTATTCTTGAAGTCCTGTGAAAATTTGAAGCAGCTGCAATATGTCTTTCATCGAAAAAAA--TGGACCGATATGACGTAGGGGTCGATTTCCGAAGTAACAACGGTTTTGATAAATCTGCACTTGTAATCGGGAAAGTTTAAAA--CTCAATTTT-ATGGGATTTTTCTGCAGTGAAAATGTG-ATGTGGGTTGCAGTAAAAGATTTAATATCTCATGTGTCCGCCGTGTTGCCCAATGCACGTCATG-ATCCGCCGTCGCATGCTGTCGACGTAACG-CTGTACGTA---CGGCGCCGGTAAAT-TGTCCCATTCAGCCTG-TAGGGCTGCTGAAAGGTCCTGCACCGTGTTGAT--TGCATAATTTGTTCTAACACGGCG-TCCTAACTCATCCCATATGTGTTCGATGGGATTTAAGTCAGGACTATTCGCCGGCCAGTCTAAAACATTGACGTTATTATCCGCCAAAAAACGTCGAGTAA-GTGCAGCTGTATGGGGACGGGCGTTATCATGCATAAGTGTGACGTTCGGTCCGTGGCGCTGAATAAAAGGAACAACTTCTGGTTCAAGAACATTATTGACGTAGGTCTGGGCATTGATGTTTCCTTCAATAACGATTAGGCGGGTCTTGTGTA-CATCCATAATTCCA-CCCCAGACTA--ATACTGAACCTCCCCCAAAGCGGTCTCTCTCAACGACGCACGCATCGGCGNAACGCTC---CCCC---------------C-GACGACGGTANATTC-T--TCTCACGTCCGTCGGCATGACTCAAAT-TGAATCGAGACTCGTCCGAAAACAATAC-T-GATCTCCAATCAGCACGTCGGAAACGCCGGCGACGTCGGCACCAGTCGAGTCTCGC-A-CCCGATGACGTCTGGTTAAAATTTGGCCAAAGTAT-G-T----CTGTACGGACGAATCGGG--TCGNCATTTTGTCGCAATCGGTTCC----GAACTGTCTGTGCACTG-----ATTCCATGC---CGT---C---CTGTTGCTGATGCCGACAG---ACGTCGGTTACGTAAGTGTTGAACCGTGATGTACC-ATCATCGGCCGCAGTCGTCACACGTGGCCGACCGCTTCGGGGACGGTCCCAAACGTTTCCCCTGATCTGGAAACGTCTTCGCAAACGCTCAATTGTCTTCCTCGTGCAGCCGAACAGCCGGGATACTTCGGCTACTGTAGAGCCAGCATTCAGCGTCCCGATCGCCTGATTTCTTTGGTCGTTATTTAGTCTTGGCATTGCAATTTGACTTGATTTTATGTGATNTTTTTGTATTGTGCCTAATTTCTGGTCAATAAGTGCAGTCAGATACCACCACCGGATATCGACCGTCGCTGCACGGAGCGCACGTG--C--AA--CAAGTTAATCGGGCCTCTCGGCTAAGCGCTTGGCTGATTATTGATAAAACCAACTTTGACAGGTACTCCAACGAATACATGTACATTATTTATAGCTTATTTTGACAAATTATTAATATTGAGGAAATAATT-AAAAAAATA-AAAGTGGGTACTTTC-TTTTTTGGCTCAGTATATATA
Reference ( family-2173 ) : CAAAAAAGAAAGTACCCACTCTATAT--ATCTATCATTATAAAGAAAAGGAGTATACATTCGGATTTAATTTTTTAATTGAAGTAAAGAACAATTTATTCTTGAAGTCCTGTGAAAATTTGAAGCAGCTGCAATATGTCTTTCATCGAAAAAAA--TGGACCGATATGACGTAGGGGTCGATTTCCGAAGTAACAACGGTTTTGATAAATCTGCACTTGTAATCGGGAAAGTTTAAAA--CTCAATTTT-ATGGGATTTTTCTGCAGTGAAAATGTG-ATGTGGGTTGCAGTAAAAGATTTAATATCTCATGTGTCCGCCGTGTTGCCCAATGCACGTCATG-ATCCGCCGTCGCATGCTGTCGACGTAACG-CTGTACGTA---CGGCGCCGGTAAAT-TGTCCCATTCAGCCTG-TAGGGCTGCTGAAAGGTCCTGCACCGTGTTGAT--TGCATAATTTGTTCTAACACGGCG-TCCTAACTCATCCCATATGTGTTCGATGGGATTTAAGTCAGGACTATTCGCCGGCCAGTCTAAAACATTGACGTTATTATCCGCCAAAAAACGTCGAGTAA-GTGCAGCTGTATGGGGACGGGCGTTATCATGCATAAGTGTGACGTTCGGTCCGTGGCGCTGAATAAAAGGAACAACTTCTGGTTCAAGAACATTATTGACGTAGGTCTGGGCATTGATGTTTCCTTCAATAACGATTAGGCGGGTCTTGTGTA-CATCCATAATTCCA-CCCCAGACTA--ATACTGAACCTCCCCCAAAGCGGTCTCTCTCAACGACGCACGCATCGGCGNAACGCTC---CCCC---------------C-GACGACGGTANATTC-T--TCTCACGTCCGTCGGCATGACTCAAAT-TGAACCGAGACTCGTCCGAAAACAATAC-T-GATCTCCAATCAGCACGTCGGAAACGCCGGCGACGTCGGCACCAGTCGAGTCTCGC-A-CCCGATGACGTCTGGTTAAAATTTGGCCAAAGTAT-G-T----CTGTACGNACGAATCGGG--T-GGCATTTTGTCGCAATCGATTCC----GAACTGT-------CCG-----ATT--ATGC---CGT---C---CTGTTGCTGATGCCGACAG---ACGTCGGTTACGTAAGTGTTGAACCGTGATGTACC-ATCATCGGCCGCAGTCGTCACACGTGGCCGACCGCTTCGGGGACGGTCCCAAACGTTTCCCCTGATCTGGAAACGTCTTCGCAAACGCTCAATTGTCTTCCTCGTGCAGCCGAACAGCCGGGATACTTCGGCTACTGTAGAGCCAGCATTCAGCGTCCCGATCGCCTGATTTCTTTGGTCGTTATTTAGTCTTGGCATTGCAATTTGACTTGATTTTATGTGATNTTTTTGTATTGTGCCTAATTTCTGGTCAATAAGTGCAGTCAGATACCACCACCGGATATCGACCGTCGCTGCACGGAGCGCACGTG--C--AA--CAAGTTAATCGGGCCTCTCGGCTAAGCGCTTGGCTGATTATTGATAAAACCAACTTTGACAGGTACTCCAACGAATACATGTACATTATTTATAGCTTATTTTGACAAATTATTAATATTGAGGAAATAATT-AAAAAAATA-AAAGTGGGTACTTTC-TTTTTTGGCTCAGTATATATA
gi|1 : CAAAAAAGAAAGTACCCACTCTATAT--ATATATCATTATAAAGAACATGAGTATACATTCGGATTTAATTTTT-AATTTAAGTCAAGAACAATTTATTCTTGAAGTCCTGTGAAAATTTGAAGCAGCTGCAATATATCTTTCATGGAAAAAAA--TGGACCGATATGACGTAGGGGTCGATTTTCGAAGTAACAACGGTTTTGATAAATCTGCACTTGTAATCGGGAAAGTTTAAAA--CTCAA-TTT-ATGGGATTCTTCTGCAGTGAAAATGTGAATGTGGGTTGCAGTAAAAGATTTAATATCTCATGTGTCCGCCATGTTGCCCAATGCACGTCATG-ATCCACCGTCGCATGCTGTCGACGTA------------A---CGGCGCCGGTAAAT-TGTCCAATTTAGCCTG-AAGGGCTGCTGAAAGGTCCTGCACCGTGTTGAT--TGCATAATTTGGTCTAACACGGCG-TCCTAACTCATCCCATATGTGTTCGATGGGATTTAAGTCAGGACTATTCGCCAGCCAGTCTAAAACATTGACTTTATTATCCGCCAAGAAACGTCGAGTAA-GTGCAGCTGTATGGGGACGGGTGTTATCATGCATAAGTGTGAAGATGTGTCCTTGACGCTGAATAAAATGAACAACTTCTGGTTCAAGAACATTATTGACGTAGGTATGGACATTGATGTTTCCTTCAATAACGATTAGGCGGGTCATGTAAA-CATCCATAATTCCA-CCCAAGACTA--ATACTGAACCTCCCCAAAAGGGGTCTCTCTCAATGGCGCACGCATCAGCGAAACGCCCACGCCCCCCCCCCCCCCCCCCAC-GACGACGGTAGATTA----TCTCACGTCTATCGGCATGAATCAAAT-TGAA---A---TCGTCCGAAAACAATAC-T-------------GCACGTCGGAAACGCCAGCGACGTCGGTACCAGTCGAGTCTCGCAA-CCCGATGACGTCTTGTTAAAATTTGGCCAACGTAC-GTT----CTGTACGGACAAATCGGG--T---CATTTTGTCGCAATCGGTTCC----GAACTGTCTGTGCACTG-----ATTAAATGC---CGTCGCC---CTGTTGCTGATGCCGACAG---ACGTCGGTTACGTAAGTGTTGA--------------ATTATCGGCCGCAGTCGTCACACGTGGCTGACCGCTTCGGGGACGGTCCCAAACGTTTCCCGTCATCTGAAAACGTCTTCGCAAACGCTCAATTATCTTCCTCGTGCAGCCGAACA----------TT---------------CAGCAT-------CCCGATCGCCTGATTTCTTTGGTCGTTACTTAGTCTTGGCATTGCAATTTGACGTGATTTTATGTGATCTTTTTGTATAATGCCAAATTTCTGGTCAATAAGTGCAGTCAGATACCACCACCTGATATCGACCGTCGCTGCACGGAGTGCACGTG--CAAAA--CAAGTTAATCGGGCCTCCCGGCTAAGCGCTTGGCTGATTATTGATAAAACCAACTTTGACAGGTACTCTTACGAATACATGTACATTAATTATAGCTTATTTTGACAAATTGTTGATATTGAGGAAATAATT-TAAAAAATA-AAAGGGGGTACTTTC-TTTTTTGTCTCAGTGTAT
gi|10 : actgagcGGTCTTTATTTAGTCTTGGCATTGCAACTTGACTTGATATTATGTGATATTTTTGTATTGTGCCTAATTTCTGGTCAGTAAGTGCAGTCAGATACCACCACCGGATATCGACCGTAGCTGCACGGAGCGCACGTGAAA--AA--CAAGTTAATCGGGCCTCTCGGCTAAGCGCTTGACTGATTATTGATTAAATCAACTTTGACAGGTACTCCAACGAATACATGTACATTATTTATAGTT--TTTTGACAAATTATTCATGTTGAGGAAATAATT-CAAAAAAT--ACTGTGGATACTTTC-TTTTTTGGCTCAGTAt
gi|11 : ATAATG-ATAGATATATAGAGTGGGTACTTTCTTTTTTTGGTTCAGTATAattta
gi|11 : AAAAAAGAAAGTACCCACTCTATAT--ATCTATCATTATAAAGAAAAAGAGTACACATTTGGATTTAATTTT-TAATTGAAGTAAAGAACAATTTATTTTTGAAGTCCTGTGAAAATTTGAAGCAGCTGCAATATGTCTTTCATCG-AAAAAA--TGGACCGAAATGACGTAAGGGTCGATTTCCGAAGT-ACGACGGTTTTGATCAATCTGCACTTGTAATCGGGAAAGTTTAAAAATCTCAGTTTaaagaaaaagagtacacatttggatttaatttttaattgaagtaaagaacaatttatttttgaagtcctgtgaaaatttgaagcagctgcaatatgtctttcatcgaaaaaatggaccgaaatgacgtaagggtcgatttccgaagtacgacggttttgatcaatctgcacttgtaatcgggaaagtttaaaaatctcagttt
gi|12 : tatactgaaccaATTGTGCCTAATTTCTGGTCGATAAGTGCAGCCATATACCACCACCGGATATCAACCATCGCTGCACGGAGCGCACGTG--C--AAAACAGGTTAATCAGGCCTCTCGGCTAAGCGCTTGGCTGATTATTGATAAAACCAACTTTGACAGGTACTCCAACGAATACATGTACACTATTTATAGCTTATTTTGACAAATTATTAAAAT
gi|14 : CTAATTTCTTGTCAATAAGTGCCGTCATATACCACCACCTGATATCGACCGTCGCTGCACGGAGCGCACTTG--C--AAAACAAGTTAATCGGGCCTCTCGGCTAAGCGCTTGGCTGATTATTGATAAAACAAACTTTGACAGGTACTCCAACGAAAACATGTACATTATTTAT
gi|15 : TCT-TCTCAACAATGCAACAATCGGCGAATCTTTC---ATTT---------------T-TACGCCTGTATACCCGTAATCT----TCCGTCAGCATGACT-AACTGTGAACCGAGATTCATCAGTGAACAAAAC-TCGGT-TCCA
gi|17 : ctgtTAAATGGAATGACTTCAGCATCTAAAACCTCATCAATGTTCCTCTGAGCATTCAAATTCCCACGAATGACAAAGAGTCAGGTCTTTTGTC-CCCCCATGATCCCA-CCCCg
gi|19 : TCT-TCTCAACAATGCAACAATCGGCGAATCTTTC---ATTT---------------T-TACGCCTGTATACCCATAATCT----TCCGTCAGCATGACTTACTG-TGAACCGAGATTCATCgaatct
gi|2 : tgtCAAAAAAGAAAGTACTCACTCTATAT--ATCTATCATTATAAAGAAAAGGTGTATACATTCGGATTTAATTTTTTAATTGAAGTAAAGAACAATTTATTCTTGAAATCCTGT-AAAATTTGAAGCTGCTGCAATATGTCTTTCATCTAAAAAAA--TGGACCGATATTACGTAGGGGTCGATTTGC-AAGTTACAACGGTTTTGATAAATCTGCACTTGTAATCGGGAAAGTTTAAAA--CATGATTTTCATGGGATTTTTCTGCAGTGAAAATGTG-ATGTAGGTTGCAGTAAAAGATTTAATATCTC-----T------TGTTGCCCAATGCACGTCATG-ATCCGCCATTGCATGCTGTCGACGTAACG-CTATACGTA---CGGCACCAGTATAT-TGTCACATTCAGTCTTCTAGGGCTGCTGAAAGGTCCTGCACCGTGTTGAT--TGCATAATTTGTTCTAACACGGCG-TCCTAACTCATCTCATATGTATTTGATGGGATTTAAGTCAGGACTATTCACTGGCCAATCTAAAACATTGACGTTATTATCCGCCAAAAAACATCGAGTAA-GTGCAGCTGTATGGGGACGGGCGTTATCATTCATAAGTGTGACGTTCGGTCCGTGGCGCTGAATAAAAGAAACAACTTCTGGCTCAAGAACATTATTGACGTAGGTCTGGGCATTAATGTTTCCTTCAATAATGATTAGGAGGGTCTTGTGTA-CACCCATAATTCCACCCCCAGACTA--ATACTGAACCTCCCCCAAAGCGGTCTCTCTCAATGACGCACGCATCAGCATAACACTT---CCCC---------------C-GACAACGGTAAATTC----TCTCACGTGCGTCGGCATGACTCAAAT-TGAATCGAGACTTGTACGAAAACAATAC-T-GATCTCCAATCAGCTTGT-GGAAACGCCGGCAACGTCGGCACCAGTCGAGTCTCGC-AGCCCGATGACGTCTGGTTAAAATTTGGCCAAAGTATGG-T----CTGTACAGATGAATCGGG--TCAACATTTTGTCGCAATCGATTCC----GAACTGT-------CTG-----ATTCCATGC---CGT---CACTCTGTTGCTGATGCCAACAG---ATATC-------------TTGAACCATGATGTACCTATCATCGGCCTCAGTCGTCACATGCGGCAGACCGCTTCGGGGACGGTCCCAAGCGTTTCCCCTGATCTGGAAACATCTTCACAAACACTCAGTTGTCTTCCTCGTGCAGCCGAACAGCCAGGATACTTCGGCTACTGTAGAGCCAGCATTCAGCGTCCCGATTGCCTGATTTCTTTGGTCATTAATTAGT-----CATTGCAATTTGACTTGATTTTTTGTAATCTTTTTGTAATTTGCCTAATTTCTGGTGAGTAAGTGCAGTCAGATATCACCACAGGATATCGACCGTCGCTGCACGGAGTGC-------C--AA--TG-------CG-----CTTGGC------------TGATTATTGATAAAACCAACTTTGACAGGTACTCCAACGAATACATGTACATTATTTATAGCTTATTTTCACAAATTATTAATATTGAGGAAATAATT-AAAAAAA-A-AAAGTGGGTACTTTC-TTTTTTGGCTCAGTATATATA
gi|20 : TATAGCTTATTTTGACAAATTATTAATATTGAGGAAATAATT-AAAAAAATA-GAAGTGGGTACTTTC-TTTTTTGGCTCAGTATATA
gi|21 : tgGTCGTTATTTAGTCTTGGCATTGCAATTTGACTTGATTTTATGTGATATTTTTGTATTa
gi|3 : CAAAAAAGAAAATACCTACTCTATATTTATCTATCATTATAAAGAAAAGGAGTACCCATTCGGATTTAATTTTTTAATTGAAGTAAAGAACAATTTATTTTTGAAGTCCTTTGAAAATTTGAAGCAGCTGCAATATGTCTT-CATCGAAAAAAAAATAGACCGATATGACGTAGGGGTCGATTTCCGAAGTAAAAACGGTTTTGATAAATCTACACTTGTAATCGGGAAAGTTTAAAT--TTCAATATT-ATGGGATTTTTCTGCAGTGAAAATGTG-ATGTGGGTTGCAGTAAAAGGTTTAATATCTCATGTGTCCGCCGTGTTGCCCAATGCACGTCATG-ATCTGCCGTCGCATGCTGTCGACGTAACG-CTGTACGTA---CGGCGCCGGTAAAT-TGTCCCATTCAGCCTG-TAGGGCTGCTGAAAGGTCCTGCACCGTGTTGGT--TGCATAATTTGTTCTAACANNNNN-NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCATAAGTATGACGTCCGGTCCGTGGCGCTG-ATAAAAGAAATAACTTCTGGTTCAAGAACATTATTGACGTATGTCTGGGCATTGATGTTTCCTTCAATAACGATAAGGCGGGTCTTGTGTA-CATCCATAATTCCA-CCCCAGA--A-------GAACATCCCCCAAAGAGGTCTCTCTCAATGACGCACGCATCAGCGTAACGCTC---CCCC---------------C-GACGACGGTAAATTC----TCTAACGTCTGTCGGCGTCACTCTAAT-TGAATCGAGACTCGTCCGAAAACAATAC-T-GATCTCCAATCAGTACGTCGGAAACGCCGGCGACGTCGGCACCAGTCGAGTCTCGC-
gi|4 : atactaagcCAAAAAAGAAAGTACCCACTCTATAT--ATCTATCATTATAAAGAAAAGGAGTAAACATTCGGATTTAATTTTTTAATTGAAGTAAAAAACAATTTATTCTTGAAGTCCTACGAAAATTTGAAACAGCTGCAATATGTCTTTCATCGAA-------TGGACCGGTATGACGTAACTGTCGATTTCCGAAGTAATAACGGTTTTGATAAATCTGCACTTGTATTCGGGAAAGTTTAAAA--CTCAATTTT-ATGGGATTTTTCTGCAGTGAAAATGTG-ATGTGGGTTGCAGTATAAGATTTAATATCTCATTTTCCCGCCATGTTGCTCAATGTACGTTATG-ATCCGCCGTCGTATGCTGTCGACGTAACG-CTGTACGTA---CGGCGCCGGTAAAT-AGTCCCATTCAGCCAG-TAGGGCTGCTGAAAGGTCCTGCGCCGTGTTGAT--TGCATATTTTGTTCTAACA
gi|4 : attgagcACAACTTCTGGTTCAAGAACATTATTGACGTAGGTCTGGTCATTGATGTTTCATTCAATAACGATAAGTCGGGTCTTGTGTA-CATCCATAATTCCA-TCCCAGACTA--ATACTGAATCTCCCCCAAAGCGGTCTCTGTCAATGACGCACGCATCAGCGTAACGCTC---CCCC---------------C-GACGACGGTAAATTC-T---CTTACGTCCACCGGCATGACTCAAAT-TGAATCGACCCTAGTCCGAAAACAATAC-T-GATCTCCAATCAGCAGGTCGGAAACGCCGGnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnacaacttctggttcaagaacattattgacgtaggtctggtcattgatgtttcattcaataacgataagtcgggtcttgtgtacatccataattccatcccagactaatactgaatctcccccaaagcggtctctgtcaatgacgcacgcatcagcgtaacgctccccccgacgacggtaaattctcttacgtccaccggcatgactcaaattgaatcgaccctagtccgaaaacaatactgatctccaatcagcaggtcggaaacgccgg
gi|5 : attgagccaaaaaagaaagtacccactctatatatctatcattataaagaaaaggagtaaacattcggatttaattttttaattgaagtaaaaaacaatttattcttgaagtcctacgaaaatttgaaacagctgcaatatgtctttcatcgaatggaccggtatgacgtaactgtcgatttccgaagtaataacggttttgataaatctgcacttgtattcgggaaagtttaaaactcaattttatgggatttttctgcagtgaaaatgtgatgtgggttgcagtataagatttaatatctcattttcccgccatgttgctcaatgtacgttatgatccgccgtcgtatgctgtcgacgtaacgctgtacgtacggcgccggtaaatagtcccattcagccagtagggctgctgaaaggtcctgcgccgtgttgattgcatattttgttctaacannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnTCCTTTACCGTGTTGAT--TTCATAATTTGTTCTAACACGGCA-TCCTAACTGATCCTATATGTGATCGATGGGATTTAAGTCAGGACTATTCGCCGGCCAGTCTAAAATATTGACGTTATTATCCGCCAAAAAACGTCGAGTAA-GTGCAGCTGTATGGGGACGGGCGTTATCATGCATAAGTGTGACGTTCGGTCCGTGGCGATGAATAAAAGGAACAACTTCTGGTTCAAGAACATTATTGACGTAGGTCTGTGCATTGATGTTTCCTCCAATAACGATTAGGCGGGTCTTGTGTA-CATCCATAATGCCA-CCCCAGACTA--TTACTGAACCTCCCCCAAAGCGGTCTCTCTCAATGACGCACGCATCAGCGTAACGCTC---CCCC---------------C-GACGACGGTATATTC----TCTCACGTCCATCGGCATGACTCAAAT-TGAATCGAGACTCGTCCGAAAACAATAC-T-GATCTCCAATCAGCACGTCGGAAACGCC--TGACGTCTG-----GT------------------TAAAATTTGGCCAAAGT------ACAGTCT-G-T--------ACGGACGAATCTGG--TCATCATTTTGTCGCAATTGGTTCC----GAACTGTCTGTGCACTG-----ATTCCATGCTGTCGC---C---CTGTTGCTGATGCCGACAG---ACGTCGGTTACGTAAGTGTTGAACCGTGATGTACCGATCATCGACCGCAGTCGTCACACATGACCGACCGCTTCGGGGACGGTCCCAAACGTTTCCCCTGATCTGGAAACGTCTTCGCAAACGCTCAATTGTCTTCCTCGTGCAGCCGAACAGCCGGGATACTTCGGCTACTGTAGAGCCAGAATTCAGCATCCCGATCGCCTGATTTCTTTGGTCGTTATTTAGTCTTGACATTGCAATTTGATTTGATTTTATGTGATCTTTTTGTATTGT
gi|6 : ACCTGATGAGTCCTCCATTCTAATTAATGCATG-CACGCATTCTTCGTCTCATACTCCTAACGTAAGGTCTG-ATGTAAGCTGGTGCC----AATGTATTCCACTCACGCTG-AAGAGCTGCAGCTAGGT--TG-ACTGTGTTGATGTTGCC--ATTTTTTCGAACACAATGGTCCTAATTCGTTCCAATTATGTTCAATGGGAGACGAGTCTGGACTGTTGGCTGGCCAGTTCAACAGATTAACGTTGTTCTGCGCAAGAAAATGACGAGTAACGT-TAGCCGTAT--GAAC--------TCTTAC----GTCTGCAGCT-AGCCCATGTTGTTGTATAAATGGTAGTGCCTCTGGAACAAGGATCTGGTTGATATACGCCTGTACAGTCACGTTGCCATTGACTGTAGTTAGTCGTTGCCCGT-TACCGTCCATTATACCT-CACCATACAAGCACACT--ACCACCACCAAAATGATCTCTTTCCAAAATGCAAGCATCCGCGAATTG-TC---CCCT---------------T-TACGTCTGTATACCCGT--TCCCAC--CCATCAGCGTGGCTATGAT-TTAAC-----TTCATCAGTAAAGAGAACAT-GAT-TCCAGTCTGCTCTTTTAAAATGCAAGTGGCGTCTGCACCAATTAACTTGTGC-ATCTCGATGACGTTGAGTAAGGATCTGCCCAAAATAT-G-GAAGATTG---GCGCGAAT-GGGTCT-GGCATTGAATCTCAGTCTCTTCCTCATGGTTTGT-------CCGGAAATACC--ATAT---CTT---CTAGCTGTTACTGTCGCTGGGAGAAAATGTCG---ACGTAGGTGTatagc
gi|7 : taggACGTGGCCGACCGCTTTGAGGACGGTCCCAAACGTTTCCCCTGGTCTGGAAACGTCTTCGCTAACGCTCAATTGTCTTCCTCGTGCAGCCACACAGCCGGAATACTTCGGCTACTGTAGAGCCAGCATTCAGTATCCCGATCGCCTGATTTTTTTGGTCGTTATTTAGTCTTGGTATTGCAGTTTGACTTGATTTTATGTGATATTTTTGTATTGTGTCTAATTTCTGGTCAACAAGTGCAGTCAGATACCACCACCGGATATCGACCGTCGCTGCACGGAGCGCACATG--CAAAA--CAAGTTAATCGGGCCTCTCGGCTAAGCGCTTGACTGATAATTGATAAAACCAAAATTGACAGGTACTCCAACGAATACATTCACATTATTTATAGCTTATTTTGACAAATTATTAATATTGAAGAAATAATTCAAAAAAATA-AAAGTGGGTACTTTC-TTTTTTGGCTCAGTGTACATA
gi|8 : AAAAAAAAACTATCCACTCTATAT--ATCTATCATTATAAAGAAAAGGAGTATACATTCGGATTTAATTTTTTAACTGAAGTAAAGAACAATTTATTCTTAAAGT-----------TTGAAGCAGCTGCAATATGTCTTTCATCGAAAAAAA--TGGACCGATATGACGTAGGGGTCGATTTCCGAAGTAACAACGGTTTTGATGAATCTGCACTTGTAAGCGGGAAAGTTTAAAA--CTCAATTTT-ATGGGATTTTTTTGAAGTGAATATGTG-ATGTGGGTTGCAGTAAAAGATTTAATATCTCATGTGTCCGCCGTGTTGCCCAATGCACGTCATG-ATCCGCCGTCGCATACTGTCGACGTAACG-CTGTACGTA---CGGCACCGGTAAAT-TGTCCCATTCAGCCTG-TAGGGCTGCTGAAAGGTCCTGcat
gi|9 : actgagtTCAGTACTATTCTTTGGCCAGTCATAAACATTGACGTTATTATCCG---AGAAACGTCGAGTAA-GTGCAGCTGTATGGGGACGGGCGTTATCATGCATAAGTGTGACGTTCGGTCCGTGGCGCTGAATAAAAGAAACCACTTCTGGTTCAAGAACATTTCTGACGTAGGTCTAGGCATTGATGTTTCCTTCAATAACGATTAGGCGGGTCTTGTTTA-CATCCATAATTCCA-CCCCAGACTA--ATACTGCAC
gi|9 : CTC---CCCC---------------CTGACGATGGTAAATTC-T---CTTACGTCCGTC-GCATGACTCAAAT-TGAATCGATACTCGTCCGAAAACAATAC-T-CATCTCCAATCAGCACGTCGGAAACgcacgcatcagcgtaacaccgaccccccccccccccccccccccccctcccccctgacgatggtaaattctcttacgtccgtcgcatgactcaaattgaatcgatactcgtccgaaaacaatactcatctccaatcagcacgtcggaaac
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|13 ): CTGCATTAAGGTTGCCCGGCTTGTCCATTATGCCCGCCCAAACCATGACGCTACCACCTTCAAACCTGTCTCGTTCCTGCAAGCAGCATTGGGCAAATCTCTCGTTCCGTCGCCTGTAAACTCTGACCCTACCGTCAGCAAAGCTGACCATGAAGCGTGACTCATCGGTAAAA
Unaligned ( gi|16 ): CTGTCTCGTTCCTGCACGCAGCATTGGGCAAATCTCTCGTTCCGTCGCCTGTAAACTCTGACCCTATCATCAGCAAAGCTGACCATGAAGCGTGACTCATCGGTAAAAATCACGTT
Unaligned ( gi|18 ): AATTGTTCCCCTTTACGTCTATATACCCGTTCCCGCCTGTCAGCGTGGCTAAGGTTAAACTTTGATTCATCAGCAGAGAGAACGTGATTCCAGTCTGCTCTTCTTAA
Alignments
lowQualScore : 111 222222222222222 44444 222 1 3333333333 2222 111 4444444 111 1111 2 222222222
lowQualScore : 99 0 1 2 99 3 99 8 8 2 6 6 3 111 1 6 6 1 99 8 00 6 0 0 0 2 3 0 1 5 5 999 1 2 3 3 1 0 777 777777777777777 4 1 00000 7 1 0 0 4 1 3 5 5 5 3 3 3 0 555 0 0 1 7 2 0 7777777777 2 2 1111 0 6 2 0 777 2222222 777 7777 0 7777 6 0 2 0 0 2 3 44 1 1 222222222 1 6 6 6
lowQualScore : .. . . . .. . .. . . . . . . ... . . . . .. . .. . . . . . . . . . . ... . . . . . . ... ............... . . ..... . . . . . . . . . . . . . . ... . . . . . . .......... . . .... . . . . ... ....... ... .... . .... . . . . . . . .. . . ......... . . . .
lowQualScore : 22 3 0 5 22 5 22 0 0 2 7 7 2 777 0 7 7 0 22 0 33 7 2 2 2 5 5 5 4 0 0 666 0 5 1 1 0 8 888 888888888888888 4 0 22222 4 1 9 1 4 4 9 0 0 6 7 2 2 6 000 2 2 2 0 5 0 2222222222 5 5 2222 2 5 5 8 555 5555555 555 2222 8 7777 7 2 5 2 2 5 2 55 0 0 000000000 7 7 7 7
consensus : CAAAAAAGAAAGTACCCACTCTATAT--ATCTATCATTATAAAGAAAAGGAGTATACATTCGGATTTAATTTTTTAATTGAAGTAAAGAACAATTTATTCTTGAAGTCCTGTGAAAATTTGAAGCAGCTGCAATATGTCTTTCATCGAAAAAAA--TGGACCGATATGACGTAGGGGTCGATTTCCGAAGTAACAACGGTTTTGATAAATCTGCACTTGTAATCGGGAAAGTTTAAAA--CTCAATTTT-ATGGGATTTTTCTGCAGTGAAAATGTG-ATGTGGGTTGCAGTAAAAGATTTAATATCTCATGTGTCCGCCGTGTTGCCCAATGCACGTCATG-ATCCGCCGTCGCATGCTGTCGACGTAACG-CTGTACGTA---CGGCGCCGGTAAAT-TGTCCCATTCAGCCTG-TAGGGCTGCTGAAAGGTCCTGCACCGTGTTGAT--TGCATAATTTGTTCTAACACGGCG-TCCTAACTCATCCCATATGTGTTCGATGGGATTTAAGTCAGGACTATTCGCCGGCCAGTCTAAAACATTGACGTTATTATCCGCCAAAAAACGTCGAGTAA-GTGCAGCTGTATGGGGACGGGCGTTATCATGCATAAGTGTGACGTTCGGTCCGTGGCGCTGAATAAAAGGAACAACTTCTGGTTCAAGAACATTATTGACGTAGGTCTGGGCATTGATGTTTCCTTCAATAACGATTAGGCGGGTCTTGTGTA-CATCCATAATTCCA-CCCCAGACTA--ATACTGAACCTCCCCCAAAGCGGTCTCTCTCAACGACGCACGCATCGGCGNAACGCTC---CCCC---------------C-GACGACGGTANATTC-T--TCTCACGTCCGTCGGCATGACTCAAAT-TGAATCGAGACTCGTCCGAAAACAATAC-T-GATCTCCAATCAGCACGTCGGAAACGCCGGCGACGTCGGCACCAGTCGAGTCTCGC-A-CCCGATGACGTCTGGTTAAAATTTGGCCAAAGTAT-G-T----CTGTACGGACGAATCGGGTC-GNCATTTTGTCGCAATCGGTTCCGAACTGTCTGTGCGCTGATTCCATGC---CGT---C---CTGTTGCTGATGCCGACAG---ACGTCGGTTACGTAAGTGTTGAACCGTGATGTACC-ATCATCGGCCGCAGTCGTCACACGTGGCCGACCGCTTCGGGGACGGTCCCAAACGTTTCCCCTGATCTGGAAACGTCTTCGCAAACGCTCAATTGTCTTCCTCGTGCAGCCGAACAGCCGGGATACTTCGGCTACTGTAGAGCCAGCATTCAGCGTCCCGATCGCCTGATTTCTTTGGTCGTTATTTAGTCTTGGCATTGCAATTTGACTTGATTTTATGTGATNTTTTTGTATTGTGCCTAATTTCTGGTCAATAAGTGCAGTCAGATACCACCACCGGATATCGACCGTCGCTGCACGGAGCGCACGTG--C--AA--CAAGTTAATCGGGCCTCTCGGCTAAGCGCTTGGCTGATTATTGATAAAACCAACTTTGACAGGTACTCCAACGAATACATGTACATTATTTATAGCTTATTTTGACAAATTATTAATATTGAGGAAATAATT-AAAAAAATA-AAAGTGGGTACTTTC-TTTTTTGGCTCAGTATATATA
Reference ( family-2173 ) : CAAAAAAGAAAGTACCCACTCTATAT--ATCTATCATTATAAAGAAAAGGAGTATACATTCGGATTTAATTTTTTAATTGAAGTAAAGAACAATTTATTCTTGAAGTCCTGTGAAAATTTGAAGCAGCTGCAATATGTCTTTCATCGAAAAAAA--TGGACCGATATGACGTAGGGGTCGATTTCCGAAGTAACAACGGTTTTGATAAATCTGCACTTGTAATCGGGAAAGTTTAAAA--CTCAATTTT-ATGGGATTTTTCTGCAGTGAAAATGTG-ATGTGGGTTGCAGTAAAAGATTTAATATCTCATGTGTCCGCCGTGTTGCCCAATGCACGTCATG-ATCCGCCGTCGCATGCTGTCGACGTAACG-CTGTACGTA---CGGCGCCGGTAAAT-TGTCCCATTCAGCCTG-TAGGGCTGCTGAAAGGTCCTGCACCGTGTTGAT--TGCATAATTTGTTCTAACACGGCG-TCCTAACTCATCCCATATGTGTTCGATGGGATTTAAGTCAGGACTATTCGCCGGCCAGTCTAAAACATTGACGTTATTATCCGCCAAAAAACGTCGAGTAA-GTGCAGCTGTATGGGGACGGGCGTTATCATGCATAAGTGTGACGTTCGGTCCGTGGCGCTGAATAAAAGGAACAACTTCTGGTTCAAGAACATTATTGACGTAGGTCTGGGCATTGATGTTTCCTTCAATAACGATTAGGCGGGTCTTGTGTA-CATCCATAATTCCA-CCCCAGACTA--ATACTGAACCTCCCCCAAAGCGGTCTCTCTCAACGACGCACGCATCGGCGNAACGCTC---CCCC---------------C-GACGACGGTANATTC-T--TCTCACGTCCGTCGGCATGACTCAAAT-TGAATCGAGACTCGTCCGAAAACAATAC-T-GATCTCCAATCAGCACGTCGGAAACGCCGGCGACGTCGGCACCAGTCGAGTCTCGC-A-CCCGATGACGTCTGGTTAAAATTTGGCCAAAGTAT-G-T----CTGTACGGACGAATCGGGTC-GNCATTTTGTCGCAATCGGTTCCGAACTGTCTGTGCACTGATTCCATGC---CGT---C---CTGTTGCTGATGCCGACAG---ACGTCGGTTACGTAAGTGTTGAACCGTGATGTACC-ATCATCGGCCGCAGTCGTCACACGTGGCCGACCGCTTCGGGGACGGTCCCAAACGTTTCCCCTGATCTGGAAACGTCTTCGCAAACGCTCAATTGTCTTCCTCGTGCAGCCGAACAGCCGGGATACTTCGGCTACTGTAGAGCCAGCATTCAGCGTCCCGATCGCCTGATTTCTTTGGTCGTTATTTAGTCTTGGCATTGCAATTTGACTTGATTTTATGTGATNTTTTTGTATTGTGCCTAATTTCTGGTCAATAAGTGCAGTCAGATACCACCACCGGATATCGACCGTCGCTGCACGGAGCGCACGTG--C--AA--CAAGTTAATCGGGCCTCTCGGCTAAGCGCTTGGCTGATTATTGATAAAACCAACTTTGACAGGTACTCCAACGAATACATGTACATTATTTATAGCTTATTTTGACAAATTATTAATATTGAGGAAATAATT-AAAAAAATA-AAAGTGGGTACTTTC-TTTTTTGGCTCAGTATATATA
gi|1 : CAAAAAAGAAAGTACCCACTCTATAT--ATATATCATTATAAAGAACATGAGTATACATTCGGATTTAATTTTT-AATTTAAGTCAAGAACAATTTATTCTTGAAGTCCTGTGAAAATTTGAAGCAGCTGCAATATATCTTTCATGGAAAAAAA--TGGACCGATATGACGTAGGGGTCGATTTTCGAAGTAACAACGGTTTTGATAAATCTGCACTTGTAATCGGGAAAGTTTAAAA--CTCAA-TTT-ATGGGATTCTTCTGCAGTGAAAATGTGAATGTGGGTTGCAGTAAAAGATTTAATATCTCATGTGTCCGCCATGTTGCCCAATGCACGTCATG-ATCCACCGTCGCATGCTGTCGACGTA------------A---CGGCGCCGGTAAAT-TGTCCAATTTAGCCTG-AAGGGCTGCTGAAAGGTCCTGCACCGTGTTGAT--TGCATAATTTGGTCTAACACGGCG-TCCTAACTCATCCCATATGTGTTCGATGGGATTTAAGTCAGGACTATTCGCCAGCCAGTCTAAAACATTGACTTTATTATCCGCCAAGAAACGTCGAGTAA-GTGCAGCTGTATGGGGACGGGTGTTATCATGCATAAGTGTGAAGATGTGTCCTTGACGCTGAATAAAATGAACAACTTCTGGTTCAAGAACATTATTGACGTAGGTATGGACATTGATGTTTCCTTCAATAACGATTAGGCGGGTCATGTAAA-CATCCATAATTCCA-CCCAAGACTA--ATACTGAACCTCCCCAAAAGGGGTCTCTCTCAATGGCGCACGCATCAGCGAAACGCCCACGCCCCCCCCCCCCCCCCCCAC-GACGACGGTAGATTA----TCTCACGTCTATCGGCATGAATCAAAT-TGAA---A---TCGTCCGAAAACAATAC-T-------------GCACGTCGGAAACGCCAGCGACGTCGGTACCAGTCGAGTCTCGCAA-CCCGATGACGTCTTGTTAAAATTTGGCCAACGTAC-GTT----CTGTACGGACAAATCGGGT----CATTTTGTCGCAATCGGTTCCGAACTGTCTGTGCACTGATTAAATGC---CGTCGCC---CTGTTGCTGATGCCGACAG---ACGTCGGTTACGTAAGTGTTGA--------------ATTATCGGCCGCAGTCGTCACACGTGGCTGACCGCTTCGGGGACGGTCCCAAACGTTTCCCGTCATCTGAAAACGTCTTCGCAAACGCTCAATTATCTTCCTCGTGCAGCCGAACA----------TT---------------CAGCAT-------CCCGATCGCCTGATTTCTTTGGTCGTTACTTAGTCTTGGCATTGCAATTTGACGTGATTTTATGTGATCTTTTTGTATAATGCCAAATTTCTGGTCAATAAGTGCAGTCAGATACCACCACCTGATATCGACCGTCGCTGCACGGAGTGCACGTG--CAAAA--CAAGTTAATCGGGCCTCCCGGCTAAGCGCTTGGCTGATTATTGATAAAACCAACTTTGACAGGTACTCTTACGAATACATGTACATTAATTATAGCTTATTTTGACAAATTGTTGATATTGAGGAAATAATT-TAAAAAATA-AAAGGGGGTACTTTC-TTTTTTGTCTCAGTGTAT
gi|10 : actgagcGGTCTTTATTTAGTCTTGGCATTGCAACTTGACTTGATATTATGTGATATTTTTGTATTGTGCCTAATTTCTGGTCAGTAAGTGCAGTCAGATACCACCACCGGATATCGACCGTAGCTGCACGGAGCGCACGTGAAA--AA--CAAGTTAATCGGGCCTCTCGGCTAAGCGCTTGACTGATTATTGATTAAATCAACTTTGACAGGTACTCCAACGAATACATGTACATTATTTATAGTT--TTTTGACAAATTATTCATGTTGAGGAAATAATT-CAAAAAAT--ACTGTGGATACTTTC-TTTTTTGGCTCAGTAt
gi|11 : ATAATG-ATAGATATATAGAGTGGGTACTTTCTTTTTTTGGTTCAGTATAattta
gi|11 : AAAAAAGAAAGTACCCACTCTATAT--ATCTATCATTATAAAGAAAAAGAGTACACATTTGGATTTAATTTT-TAATTGAAGTAAAGAACAATTTATTTTTGAAGTCCTGTGAAAATTTGAAGCAGCTGCAATATGTCTTTCATCG-AAAAAA--TGGACCGAAATGACGTAAGGGTCGATTTCCGAAGT-ACGACGGTTTTGATCAATCTGCACTTGTAATCGGGAAAGTTTAAAAATCTCAGTTTaaagaaaaagagtacacatttggatttaatttttaattgaagtaaagaacaatttatttttgaagtcctgtgaaaatttgaagcagctgcaatatgtctttcatcgaaaaaatggaccgaaatgacgtaagggtcgatttccgaagtacgacggttttgatcaatctgcacttgtaatcgggaaagtttaaaaatctcagttt
gi|12 : tatactgaaccaATTGTGCCTAATTTCTGGTCGATAAGTGCAGCCATATACCACCACCGGATATCAACCATCGCTGCACGGAGCGCACGTG--C--AAAACAGGTTAATCAGGCCTCTCGGCTAAGCGCTTGGCTGATTATTGATAAAACCAACTTTGACAGGTACTCCAACGAATACATGTACACTATTTATAGCTTATTTTGACAAATTATTAAAAT
gi|14 : CTAATTTCTTGTCAATAAGTGCCGTCATATACCACCACCTGATATCGACCGTCGCTGCACGGAGCGCACTTG--C--AAAACAAGTTAATCGGGCCTCTCGGCTAAGCGCTTGGCTGATTATTGATAAAACAAACTTTGACAGGTACTCCAACGAAAACATGTACATTATTTAT
gi|15 : TCT-TCTCAACAATGCAACAATCGGCGAATCTTTC---ATTT---------------T-TACGCCTGTATACCCGTAATCT----TCCGTCAGCATGACT-AACTGTGAACCGAGATTCATCAGTGAACAAAAC-TCGGT-TCCA
gi|17 : ctgtTAAATGGAATGACTTCAGCATCTAAAACCTCATCAATGTTCCTCTGAGCATTCAAATTCCCACGAATGACAAAGAGTCAGGTCTTTTGTC-CCCCCATGATCCCA-CCCCg
gi|19 : TCT-TCTCAACAATGCAACAATCGGCGAATCTTTC---ATTT---------------T-TACGCCTGTATACCCATAATCT----TCCGTCAGCATGACTTACTG-TGAACCGAGATTCATCgaatct
gi|2 : tgtCAAAAAAGAAAGTACTCACTCTATAT--ATCTATCATTATAAAGAAAAGGTGTATACATTCGGATTTAATTTTTTAATTGAAGTAAAGAACAATTTATTCTTGAAATCCTGT-AAAATTTGAAGCTGCTGCAATATGTCTTTCATCTAAAAAAA--TGGACCGATATTACGTAGGGGTCGATTTGC-AAGTTACAACGGTTTTGATAAATCTGCACTTGTAATCGGGAAAGTTTAAAA--CATGATTTTCATGGGATTTTTCTGCAGTGAAAATGTG-ATGTAGGTTGCAGTAAAAGATTTAATATCTC-----T------TGTTGCCCAATGCACGTCATG-ATCCGCCATTGCATGCTGTCGACGTAACG-CTATACGTA---CGGCACCAGTATAT-TGTCACATTCAGTCTTCTAGGGCTGCTGAAAGGTCCTGCACCGTGTTGAT--TGCATAATTTGTTCTAACACGGCG-TCCTAACTCATCTCATATGTATTTGATGGGATTTAAGTCAGGACTATTCACTGGCCAATCTAAAACATTGACGTTATTATCCGCCAAAAAACATCGAGTAA-GTGCAGCTGTATGGGGACGGGCGTTATCATTCATAAGTGTGACGTTCGGTCCGTGGCGCTGAATAAAAGAAACAACTTCTGGCTCAAGAACATTATTGACGTAGGTCTGGGCATTAATGTTTCCTTCAATAATGATTAGGAGGGTCTTGTGTA-CACCCATAATTCCACCCCCAGACTA--ATACTGAACCTCCCCCAAAGCGGTCTCTCTCAATGACGCACGCATCAGCATAACACTT---CCCC---------------C-GACAACGGTAAATTC----TCTCACGTGCGTCGGCATGACTCAAAT-TGAATCGAGACTTGTACGAAAACAATAC-T-GATCTCCAATCAGCTTGT-GGAAACGCCGGCAACGTCGGCACCAGTCGAGTCTCGC-AGCCCGATGACGTCTGGTTAAAATTTGGCCAAAGTATGG-T----CTGTACAGATGAATCGGGTC-AACATTTTGTCGCAATCGATTCCGAACTGT-------CTGATTCCATGC---CGT---CACTCTGTTGCTGATGCCAACAG---ATATC-------------TTGAACCATGATGTACCTATCATCGGCCTCAGTCGTCACATGCGGCAGACCGCTTCGGGGACGGTCCCAAGCGTTTCCCCTGATCTGGAAACATCTTCACAAACACTCAGTTGTCTTCCTCGTGCAGCCGAACAGCCAGGATACTTCGGCTACTGTAGAGCCAGCATTCAGCGTCCCGATTGCCTGATTTCTTTGGTCATTAATTAGT-----CATTGCAATTTGACTTGATTTTTTGTAATCTTTTTGTAATTTGCCTAATTTCTGGTGAGTAAGTGCAGTCAGATATCACCACAGGATATCGACCGTCGCTGCACGGAGTGC-------C--AA--TG-------CG-----CTTGGC------------TGATTATTGATAAAACCAACTTTGACAGGTACTCCAACGAATACATGTACATTATTTATAGCTTATTTTCACAAATTATTAATATTGAGGAAATAATT-AAAAAAA-A-AAAGTGGGTACTTTC-TTTTTTGGCTCAGTATATATA
gi|20 : TATAGCTTATTTTGACAAATTATTAATATTGAGGAAATAATT-AAAAAAATA-GAAGTGGGTACTTTC-TTTTTTGGCTCAGTATATA
gi|21 : tgGTCGTTATTTAGTCTTGGCATTGCAATTTGACTTGATTTTATGTGATATTTTTGTATTa
gi|3 : CAAAAAAGAAAATACCTACTCTATATTTATCTATCATTATAAAGAAAAGGAGTACCCATTCGGATTTAATTTTTTAATTGAAGTAAAGAACAATTTATTTTTGAAGTCCTTTGAAAATTTGAAGCAGCTGCAATATGTCTT-CATCGAAAAAAAAATAGACCGATATGACGTAGGGGTCGATTTCCGAAGTAAAAACGGTTTTGATAAATCTACACTTGTAATCGGGAAAGTTTAAAT--TTCAATATT-ATGGGATTTTTCTGCAGTGAAAATGTG-ATGTGGGTTGCAGTAAAAGGTTTAATATCTCATGTGTCCGCCGTGTTGCCCAATGCACGTCATG-ATCTGCCGTCGCATGCTGTCGACGTAACG-CTGTACGTA---CGGCGCCGGTAAAT-TGTCCCATTCAGCCTG-TAGGGCTGCTGAAAGGTCCTGCACCGTGTTGGT--TGCATAATTTGTTCTAACANNNNN-NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCATAAGTATGACGTCCGGTCCGTGGCGCTG-ATAAAAGAAATAACTTCTGGTTCAAGAACATTATTGACGTATGTCTGGGCATTGATGTTTCCTTCAATAACGATAAGGCGGGTCTTGTGTA-CATCCATAATTCCA-CCCCAGA--A-------GAACATCCCCCAAAGAGGTCTCTCTCAATGACGCACGCATCAGCGTAACGCTC---CCCC---------------C-GACGACGGTAAATTC----TCTAACGTCTGTCGGCGTCACTCTAAT-TGAATCGAGACTCGTCCGAAAACAATAC-T-GATCTCCAATCAGTACGTCGGAAACGCCGGCGACGTCGGCACCAGTCGAGTCTCGC-
gi|4 : atactaagcCAAAAAAGAAAGTACCCACTCTATAT--ATCTATCATTATAAAGAAAAGGAGTAAACATTCGGATTTAATTTTTTAATTGAAGTAAAAAACAATTTATTCTTGAAGTCCTACGAAAATTTGAAACAGCTGCAATATGTCTTTCATCGAA-------TGGACCGGTATGACGTAACTGTCGATTTCCGAAGTAATAACGGTTTTGATAAATCTGCACTTGTATTCGGGAAAGTTTAAAA--CTCAATTTT-ATGGGATTTTTCTGCAGTGAAAATGTG-ATGTGGGTTGCAGTATAAGATTTAATATCTCATTTTCCCGCCATGTTGCTCAATGTACGTTATG-ATCCGCCGTCGTATGCTGTCGACGTAACG-CTGTACGTA---CGGCGCCGGTAAAT-AGTCCCATTCAGCCAG-TAGGGCTGCTGAAAGGTCCTGCGCCGTGTTGAT--TGCATATTTTGTTCTAACA
gi|4 : attgagcACAACTTCTGGTTCAAGAACATTATTGACGTAGGTCTGGTCATTGATGTTTCATTCAATAACGATAAGTCGGGTCTTGTGTA-CATCCATAATTCCA-TCCCAGACTA--ATACTGAATCTCCCCCAAAGCGGTCTCTGTCAATGACGCACGCATCAGCGTAACGCTC---CCCC---------------C-GACGACGGTAAATTC-T---CTTACGTCCACCGGCATGACTCAAAT-TGAATCGACCCTAGTCCGAAAACAATAC-T-GATCTCCAATCAGCAGGTCGGAAACGCCGGnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnacaacttctggttcaagaacattattgacgtaggtctggtcattgatgtttcattcaataacgataagtcgggtcttgtgtacatccataattccatcccagactaatactgaatctcccccaaagcggtctctgtcaatgacgcacgcatcagcgtaacgctccccccgacgacggtaaattctcttacgtccaccggcatgactcaaattgaatcgaccctagtccgaaaacaatactgatctccaatcagcaggtcggaaacgccgg
gi|5 : attgagccaaaaaagaaagtacccactctatatatctatcattataaagaaaaggagtaaacattcggatttaattttttaattgaagtaaaaaacaatttattcttgaagtcctacgaaaatttgaaacagctgcaatatgtctttcatcgaatggaccggtatgacgtaactgtcgatttccgaagtaataacggttttgataaatctgcacttgtattcgggaaagtttaaaactcaattttatgggatttttctgcagtgaaaatgtgatgtgggttgcagtataagatttaatatctcattttcccgccatgttgctcaatgtacgttatgatccgccgtcgtatgctgtcgacgtaacgctgtacgtacggcgccggtaaatagtcccattcagccagtagggctgctgaaaggtcctgcgccgtgttgattgcatattttgttctaacannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnTCCTTTACCGTGTTGAT--TTCATAATTTGTTCTAACACGGCA-TCCTAACTGATCCTATATGTGATCGATGGGATTTAAGTCAGGACTATTCGCCGGCCAGTCTAAAATATTGACGTTATTATCCGCCAAAAAACGTCGAGTAA-GTGCAGCTGTATGGGGACGGGCGTTATCATGCATAAGTGTGACGTTCGGTCCGTGGCGATGAATAAAAGGAACAACTTCTGGTTCAAGAACATTATTGACGTAGGTCTGTGCATTGATGTTTCCTCCAATAACGATTAGGCGGGTCTTGTGTA-CATCCATAATGCCA-CCCCAGACTA--TTACTGAACCTCCCCCAAAGCGGTCTCTCTCAATGACGCACGCATCAGCGTAACGCTC---CCCC---------------C-GACGACGGTATATTC----TCTCACGTCCATCGGCATGACTCAAAT-TGAATCGAGACTCGTCCGAAAACAATAC-T-GATCTCCAATCAGCACGTCGGAAACGCC--TGACGTCTG-----GT------------------TAAAATTTGGCCAAAGT------ACAGTCT-G-T--------ACGGACGAATCTGGTC-ATCATTTTGTCGCAATTGGTTCCGAACTGTCTGTGCACTGATTCCATGCTGTCGC---C---CTGTTGCTGATGCCGACAG---ACGTCGGTTACGTAAGTGTTGAACCGTGATGTACCGATCATCGACCGCAGTCGTCACACATGACCGACCGCTTCGGGGACGGTCCCAAACGTTTCCCCTGATCTGGAAACGTCTTCGCAAACGCTCAATTGTCTTCCTCGTGCAGCCGAACAGCCGGGATACTTCGGCTACTGTAGAGCCAGAATTCAGCATCCCGATCGCCTGATTTCTTTGGTCGTTATTTAGTCTTGACATTGCAATTTGATTTGATTTTATGTGATCTTTTTGTATTGT
gi|6 : ACCTGATGAGTCCTCCATTCTAATTAATGCATG-CACGCATTCTTCGTCTCATACTCCTAACGTAAGGTCTG-ATGTAAGCTGGTGCC----AATGTATTCCACTCACGCTG-AAGAGCTGCAGCTAGGT--TG-ACTGTGTTGATGTTGCC--ATTTTTTCGAACACAATGGTCCTAATTCGTTCCAATTATGTTCAATGGGAGACGAGTCTGGACTGTTGGCTGGCCAGTTCAACAGATTAACGTTGTTCTGCGCAAGAAAATGACGAGTAACGT-TAGCCGTAT--GAAC--------TCTTAC----GTCTGCAGCT-AGCCCATGTTGTTGTATAAATGGTAGTGCCTCTGGAACAAGGATCTGGTTGATATACGCCTGTACAGTCACGTTGCCATTGACTGTAGTTAGTCGTTGCCCGT-TACCGTCCATTATACCT-CACCATACAAGCACACT--ACCACCACCAAAATGATCTCTTTCCAAAATGCAAGCATCCGCGAATTG-TC---CCCT---------------T-TACGTCTGTATACCCGT--TCCCAC--CCATCAGCGTGGCTATGAT-TTAAC-----TTCATCAGTAAAGAGAACAT-GAT-TCCAGTCTGCTCTTTTAAAATGCAAGTGGCGTCTGCACCAATTAACTTGTGC-ATCTCGATGACGTTGAGTAAGGATCTGCCCAAAATAT-G-GAAGATTG-GCG--CGAAT-GGGTCTGGCATTGAATCTCAGTCTCTTCCTCATGGTTTGTCCGGAAATACCATAT---CTT---CTAGCTGTTACTGTCGCTGGGAGAAAATGTCG---ACGTAGGTGTatagc
gi|7 : taggACGTGGCCGACCGCTTTGAGGACGGTCCCAAACGTTTCCCCTGGTCTGGAAACGTCTTCGCTAACGCTCAATTGTCTTCCTCGTGCAGCCACACAGCCGGAATACTTCGGCTACTGTAGAGCCAGCATTCAGTATCCCGATCGCCTGATTTTTTTGGTCGTTATTTAGTCTTGGTATTGCAGTTTGACTTGATTTTATGTGATATTTTTGTATTGTGTCTAATTTCTGGTCAACAAGTGCAGTCAGATACCACCACCGGATATCGACCGTCGCTGCACGGAGCGCACATG--CAAAA--CAAGTTAATCGGGCCTCTCGGCTAAGCGCTTGACTGATAATTGATAAAACCAAAATTGACAGGTACTCCAACGAATACATTCACATTATTTATAGCTTATTTTGACAAATTATTAATATTGAAGAAATAATTCAAAAAAATA-AAAGTGGGTACTTTC-TTTTTTGGCTCAGTGTACATA
gi|8 : AAAAAAAAACTATCCACTCTATAT--ATCTATCATTATAAAGAAAAGGAGTATACATTCGGATTTAATTTTTTAACTGAAGTAAAGAACAATTTATTCTTAAAGT-----------TTGAAGCAGCTGCAATATGTCTTTCATCGAAAAAAA--TGGACCGATATGACGTAGGGGTCGATTTCCGAAGTAACAACGGTTTTGATGAATCTGCACTTGTAAGCGGGAAAGTTTAAAA--CTCAATTTT-ATGGGATTTTTTTGAAGTGAATATGTG-ATGTGGGTTGCAGTAAAAGATTTAATATCTCATGTGTCCGCCGTGTTGCCCAATGCACGTCATG-ATCCGCCGTCGCATACTGTCGACGTAACG-CTGTACGTA---CGGCACCGGTAAAT-TGTCCCATTCAGCCTG-TAGGGCTGCTGAAAGGTCCTGcat
gi|9 : actgagtTCAGTACTATTCTTTGGCCAGTCATAAACATTGACGTTATTATCCG---AGAAACGTCGAGTAA-GTGCAGCTGTATGGGGACGGGCGTTATCATGCATAAGTGTGACGTTCGGTCCGTGGCGCTGAATAAAAGAAACCACTTCTGGTTCAAGAACATTTCTGACGTAGGTCTAGGCATTGATGTTTCCTTCAATAACGATTAGGCGGGTCTTGTTTA-CATCCATAATTCCA-CCCCAGACTA--ATACTGCAC
gi|9 : CTC---CCCC---------------CTGACGATGGTAAATTC-T---CTTACGTCCGTC-GCATGACTCAAAT-TGAATCGATACTCGTCCGAAAACAATAC-T-CATCTCCAATCAGCACGTCGGAAACgcacgcatcagcgtaacaccgaccccccccccccccccccccccccctcccccctgacgatggtaaattctcttacgtccgtcgcatgactcaaattgaatcgatactcgtccgaaaacaatactcatctccaatcagcacgtcggaaac
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|13 ): CTGCATTAAGGTTGCCCGGCTTGTCCATTATGCCCGCCCAAACCATGACGCTACCACCTTCAAACCTGTCTCGTTCCTGCAAGCAGCATTGGGCAAATCTCTCGTTCCGTCGCCTGTAAACTCTGACCCTACCGTCAGCAAAGCTGACCATGAAGCGTGACTCATCGGTAAAA
Unaligned ( gi|16 ): CTGTCTCGTTCCTGCACGCAGCATTGGGCAAATCTCTCGTTCCGTCGCCTGTAAACTCTGACCCTATCATCAGCAAAGCTGACCATGAAGCGTGACTCATCGGTAAAAATCACGTT
Unaligned ( gi|18 ): AATTGTTCCCCTTTACGTCTATATACCCGTTCCCGCCTGTCAGCGTGGCTAAGGTTAAACTTTGATTCATCAGCAGAGAGAACGTGATTCCAGTCTGCTCTTCTTAA
Alignments
lowQualScore : 111 222222222222222 44444 222 1 3333333333 2222 111 4444444 111 1111 2 222222222
lowQualScore : 99 0 1 2 99 3 99 8 8 2 6 6 3 111 1 6 6 1 99 8 00 6 0 0 0 2 3 0 1 5 5 999 1 2 3 3 1 0 777 777777777777777 4 1 00000 7 1 0 0 4 1 3 5 5 5 3 3 3 0 555 0 0 1 7 2 0 7777777777 2 2 1111 0 6 2 4 777 2222222 777 7777 0 7777 6 0 2 0 0 2 3 44 1 1 222222222 1 6 6 6
lowQualScore : .. . . . .. . .. . . . . . . ... . . . . .. . .. . . . . . . . . . . ... . . . . . . ... ............... . . ..... . . . . . . . . . . . . . . ... . . . . . . .......... . . .... . . . . ... ....... ... .... . .... . . . . . . . .. . . ......... . . . .
lowQualScore : 22 3 0 5 22 5 22 0 0 2 7 7 2 777 0 7 7 0 22 0 33 7 2 2 2 5 5 5 4 0 0 666 0 5 1 1 0 8 888 888888888888888 4 0 22222 4 1 9 1 4 4 9 0 0 6 7 2 2 6 000 2 2 2 0 5 0 2222222222 5 5 2222 2 5 5 2 555 5555555 555 2222 8 7777 7 2 5 2 2 5 2 55 0 0 000000000 7 7 7 7
consensus : CAAAAAAGAAAGTACCCACTCTATAT--ATCTATCATTATAAAGAAAAGGAGTATACATTCGGATTTAATTTTTTAATTGAAGTAAAGAACAATTTATTCTTGAAGTCCTGTGAAAATTTGAAGCAGCTGCAATATGTCTTTCATCGAAAAAAA--TGGACCGATATGACGTAGGGGTCGATTTCCGAAGTAACAACGGTTTTGATAAATCTGCACTTGTAATCGGGAAAGTTTAAAA--CTCAATTTT-ATGGGATTTTTCTGCAGTGAAAATGTG-ATGTGGGTTGCAGTAAAAGATTTAATATCTCATGTGTCCGCCGTGTTGCCCAATGCACGTCATG-ATCCGCCGTCGCATGCTGTCGACGTAACG-CTGTACGTA---CGGCGCCGGTAAAT-TGTCCCATTCAGCCTG-TAGGGCTGCTGAAAGGTCCTGCACCGTGTTGAT--TGCATAATTTGTTCTAACACGGCG-TCCTAACTCATCCCATATGTGTTCGATGGGATTTAAGTCAGGACTATTCGCCGGCCAGTCTAAAACATTGACGTTATTATCCGCCAAAAAACGTCGAGTAA-GTGCAGCTGTATGGGGACGGGCGTTATCATGCATAAGTGTGACGTTCGGTCCGTGGCGCTGAATAAAAGGAACAACTTCTGGTTCAAGAACATTATTGACGTAGGTCTGGGCATTGATGTTTCCTTCAATAACGATTAGGCGGGTCTTGTGTA-CATCCATAATTCCA-CCCCAGACTA--ATACTGAACCTCCCCCAAAGCGGTCTCTCTCAACGACGCACGCATCGGCGNAACGCTC---CCCC---------------C-GACGACGGTANATTC-T--TCTCACGTCCGTCGGCATGACTCAAAT-TGAATCGAGACTCGTCCGAAAACAATAC-T-GATCTCCAATCAGCACGTCGGAAACGCCGGCGACGTCGGCACCAGTCGAGTCTCGC-A-CCCGATGACGTCTGGTTAAAATTTGGCCAAAGTAT-G-T----CTGTACGGACGAATCGGGTC-GNCATTTTGTCGCAATCGGTTCCGAACTGTCTGTGCGCTGATTCCATGC---CGT---C---CTGTTGCTGATGCCGACAG---ACGTCGGTTACGTAAGTGTTGAACCGTGATGTACC-ATCATCGGCCGCAGTCGTCACACGTGGCCGACCGCTTCGGGGACGGTCCCAAACGTTTCCCCTGATCTGGAAACGTCTTCGCAAACGCTCAATTGTCTTCCTCGTGCAGCCGAACAGCCGGGATACTTCGGCTACTGTAGAGCCAGCATTCAGCGTCCCGATCGCCTGATTTCTTTGGTCGTTATTTAGTCTTGGCATTGCAATTTGACTTGATTTTATGTGATNTTTTTGTATTGTGCCTAATTTCTGGTCAATAAGTGCAGTCAGATACCACCACCGGATATCGACCGTCGCTGCACGGAGCGCACGTG--C--AA--CAAGTTAATCGGGCCTCTCGGCTAAGCGCTTGGCTGATTATTGATAAAACCAACTTTGACAGGTACTCCAACGAATACATGTACATTATTTATAGCTTATTTTGACAAATTATTAATATTGAGGAAATAATT-AAAAAAATA-AAAGTGGGTACTTTC-TTTTTTGGCTCAGTATATATA
Reference ( family-2173 ) : CAAAAAAGAAAGTACCCACTCTATAT--ATCTATCATTATAAAGAAAAGGAGTATACATTCGGATTTAATTTTTTAATTGAAGTAAAGAACAATTTATTCTTGAAGTCCTGTGAAAATTTGAAGCAGCTGCAATATGTCTTTCATCGAAAAAAA--TGGACCGATATGACGTAGGGGTCGATTTCCGAAGTAACAACGGTTTTGATAAATCTGCACTTGTAATCGGGAAAGTTTAAAA--CTCAATTTT-ATGGGATTTTTCTGCAGTGAAAATGTG-ATGTGGGTTGCAGTAAAAGATTTAATATCTCATGTGTCCGCCGTGTTGCCCAATGCACGTCATG-ATCCGCCGTCGCATGCTGTCGACGTAACG-CTGTACGTA---CGGCGCCGGTAAAT-TGTCCCATTCAGCCTG-TAGGGCTGCTGAAAGGTCCTGCACCGTGTTGAT--TGCATAATTTGTTCTAACACGGCG-TCCTAACTCATCCCATATGTGTTCGATGGGATTTAAGTCAGGACTATTCGCCGGCCAGTCTAAAACATTGACGTTATTATCCGCCAAAAAACGTCGAGTAA-GTGCAGCTGTATGGGGACGGGCGTTATCATGCATAAGTGTGACGTTCGGTCCGTGGCGCTGAATAAAAGGAACAACTTCTGGTTCAAGAACATTATTGACGTAGGTCTGGGCATTGATGTTTCCTTCAATAACGATTAGGCGGGTCTTGTGTA-CATCCATAATTCCA-CCCCAGACTA--ATACTGAACCTCCCCCAAAGCGGTCTCTCTCAACGACGCACGCATCGGCGNAACGCTC---CCCC---------------C-GACGACGGTANATTC-T--TCTCACGTCCGTCGGCATGACTCAAAT-TGAATCGAGACTCGTCCGAAAACAATAC-T-GATCTCCAATCAGCACGTCGGAAACGCCGGCGACGTCGGCACCAGTCGAGTCTCGC-A-CCCGATGACGTCTGGTTAAAATTTGGCCAAAGTAT-G-T----CTGTACGGACGAATCGGGTC-GNCATTTTGTCGCAATCGGTTCCGAACTGTCTGTGCGCTGATTCCATGC---CGT---C---CTGTTGCTGATGCCGACAG---ACGTCGGTTACGTAAGTGTTGAACCGTGATGTACC-ATCATCGGCCGCAGTCGTCACACGTGGCCGACCGCTTCGGGGACGGTCCCAAACGTTTCCCCTGATCTGGAAACGTCTTCGCAAACGCTCAATTGTCTTCCTCGTGCAGCCGAACAGCCGGGATACTTCGGCTACTGTAGAGCCAGCATTCAGCGTCCCGATCGCCTGATTTCTTTGGTCGTTATTTAGTCTTGGCATTGCAATTTGACTTGATTTTATGTGATNTTTTTGTATTGTGCCTAATTTCTGGTCAATAAGTGCAGTCAGATACCACCACCGGATATCGACCGTCGCTGCACGGAGCGCACGTG--C--AA--CAAGTTAATCGGGCCTCTCGGCTAAGCGCTTGGCTGATTATTGATAAAACCAACTTTGACAGGTACTCCAACGAATACATGTACATTATTTATAGCTTATTTTGACAAATTATTAATATTGAGGAAATAATT-AAAAAAATA-AAAGTGGGTACTTTC-TTTTTTGGCTCAGTATATATA
gi|1 : CAAAAAAGAAAGTACCCACTCTATAT--ATATATCATTATAAAGAACATGAGTATACATTCGGATTTAATTTTT-AATTTAAGTCAAGAACAATTTATTCTTGAAGTCCTGTGAAAATTTGAAGCAGCTGCAATATATCTTTCATGGAAAAAAA--TGGACCGATATGACGTAGGGGTCGATTTTCGAAGTAACAACGGTTTTGATAAATCTGCACTTGTAATCGGGAAAGTTTAAAA--CTCAA-TTT-ATGGGATTCTTCTGCAGTGAAAATGTGAATGTGGGTTGCAGTAAAAGATTTAATATCTCATGTGTCCGCCATGTTGCCCAATGCACGTCATG-ATCCACCGTCGCATGCTGTCGACGTA------------A---CGGCGCCGGTAAAT-TGTCCAATTTAGCCTG-AAGGGCTGCTGAAAGGTCCTGCACCGTGTTGAT--TGCATAATTTGGTCTAACACGGCG-TCCTAACTCATCCCATATGTGTTCGATGGGATTTAAGTCAGGACTATTCGCCAGCCAGTCTAAAACATTGACTTTATTATCCGCCAAGAAACGTCGAGTAA-GTGCAGCTGTATGGGGACGGGTGTTATCATGCATAAGTGTGAAGATGTGTCCTTGACGCTGAATAAAATGAACAACTTCTGGTTCAAGAACATTATTGACGTAGGTATGGACATTGATGTTTCCTTCAATAACGATTAGGCGGGTCATGTAAA-CATCCATAATTCCA-CCCAAGACTA--ATACTGAACCTCCCCAAAAGGGGTCTCTCTCAATGGCGCACGCATCAGCGAAACGCCCACGCCCCCCCCCCCCCCCCCCAC-GACGACGGTAGATTA----TCTCACGTCTATCGGCATGAATCAAAT-TGAA---A---TCGTCCGAAAACAATAC-T-------------GCACGTCGGAAACGCCAGCGACGTCGGTACCAGTCGAGTCTCGCAA-CCCGATGACGTCTTGTTAAAATTTGGCCAACGTAC-GTT----CTGTACGGACAAATCGGGT----CATTTTGTCGCAATCGGTTCCGAACTGTCTGTGCACTGATTAAATGC---CGTCGCC---CTGTTGCTGATGCCGACAG---ACGTCGGTTACGTAAGTGTTGA--------------ATTATCGGCCGCAGTCGTCACACGTGGCTGACCGCTTCGGGGACGGTCCCAAACGTTTCCCGTCATCTGAAAACGTCTTCGCAAACGCTCAATTATCTTCCTCGTGCAGCCGAACA----------TT---------------CAGCAT-------CCCGATCGCCTGATTTCTTTGGTCGTTACTTAGTCTTGGCATTGCAATTTGACGTGATTTTATGTGATCTTTTTGTATAATGCCAAATTTCTGGTCAATAAGTGCAGTCAGATACCACCACCTGATATCGACCGTCGCTGCACGGAGTGCACGTG--CAAAA--CAAGTTAATCGGGCCTCCCGGCTAAGCGCTTGGCTGATTATTGATAAAACCAACTTTGACAGGTACTCTTACGAATACATGTACATTAATTATAGCTTATTTTGACAAATTGTTGATATTGAGGAAATAATT-TAAAAAATA-AAAGGGGGTACTTTC-TTTTTTGTCTCAGTGTAT
gi|10 : actgagcGGTCTTTATTTAGTCTTGGCATTGCAACTTGACTTGATATTATGTGATATTTTTGTATTGTGCCTAATTTCTGGTCAGTAAGTGCAGTCAGATACCACCACCGGATATCGACCGTAGCTGCACGGAGCGCACGTGAAA--AA--CAAGTTAATCGGGCCTCTCGGCTAAGCGCTTGACTGATTATTGATTAAATCAACTTTGACAGGTACTCCAACGAATACATGTACATTATTTATAGTT--TTTTGACAAATTATTCATGTTGAGGAAATAATT-CAAAAAAT--ACTGTGGATACTTTC-TTTTTTGGCTCAGTAt
gi|11 : ATAATG-ATAGATATATAGAGTGGGTACTTTCTTTTTTTGGTTCAGTATAattta
gi|11 : AAAAAAGAAAGTACCCACTCTATAT--ATCTATCATTATAAAGAAAAAGAGTACACATTTGGATTTAATTTT-TAATTGAAGTAAAGAACAATTTATTTTTGAAGTCCTGTGAAAATTTGAAGCAGCTGCAATATGTCTTTCATCG-AAAAAA--TGGACCGAAATGACGTAAGGGTCGATTTCCGAAGT-ACGACGGTTTTGATCAATCTGCACTTGTAATCGGGAAAGTTTAAAAATCTCAGTTTaaagaaaaagagtacacatttggatttaatttttaattgaagtaaagaacaatttatttttgaagtcctgtgaaaatttgaagcagctgcaatatgtctttcatcgaaaaaatggaccgaaatgacgtaagggtcgatttccgaagtacgacggttttgatcaatctgcacttgtaatcgggaaagtttaaaaatctcagttt
gi|12 : tatactgaaccaATTGTGCCTAATTTCTGGTCGATAAGTGCAGCCATATACCACCACCGGATATCAACCATCGCTGCACGGAGCGCACGTG--C--AAAACAGGTTAATCAGGCCTCTCGGCTAAGCGCTTGGCTGATTATTGATAAAACCAACTTTGACAGGTACTCCAACGAATACATGTACACTATTTATAGCTTATTTTGACAAATTATTAAAAT
gi|14 : CTAATTTCTTGTCAATAAGTGCCGTCATATACCACCACCTGATATCGACCGTCGCTGCACGGAGCGCACTTG--C--AAAACAAGTTAATCGGGCCTCTCGGCTAAGCGCTTGGCTGATTATTGATAAAACAAACTTTGACAGGTACTCCAACGAAAACATGTACATTATTTAT
gi|15 : TCT-TCTCAACAATGCAACAATCGGCGAATCTTTC---ATTT---------------T-TACGCCTGTATACCCGTAATCT----TCCGTCAGCATGACT-AACTGTGAACCGAGATTCATCAGTGAACAAAAC-TCGGT-TCCA
gi|17 : ctgtTAAATGGAATGACTTCAGCATCTAAAACCTCATCAATGTTCCTCTGAGCATTCAAATTCCCACGAATGACAAAGAGTCAGGTCTTTTGTC-CCCCCATGATCCCA-CCCCg
gi|19 : TCT-TCTCAACAATGCAACAATCGGCGAATCTTTC---ATTT---------------T-TACGCCTGTATACCCATAATCT----TCCGTCAGCATGACTTACTG-TGAACCGAGATTCATCgaatct
gi|2 : tgtCAAAAAAGAAAGTACTCACTCTATAT--ATCTATCATTATAAAGAAAAGGTGTATACATTCGGATTTAATTTTTTAATTGAAGTAAAGAACAATTTATTCTTGAAATCCTGT-AAAATTTGAAGCTGCTGCAATATGTCTTTCATCTAAAAAAA--TGGACCGATATTACGTAGGGGTCGATTTGC-AAGTTACAACGGTTTTGATAAATCTGCACTTGTAATCGGGAAAGTTTAAAA--CATGATTTTCATGGGATTTTTCTGCAGTGAAAATGTG-ATGTAGGTTGCAGTAAAAGATTTAATATCTC-----T------TGTTGCCCAATGCACGTCATG-ATCCGCCATTGCATGCTGTCGACGTAACG-CTATACGTA---CGGCACCAGTATAT-TGTCACATTCAGTCTTCTAGGGCTGCTGAAAGGTCCTGCACCGTGTTGAT--TGCATAATTTGTTCTAACACGGCG-TCCTAACTCATCTCATATGTATTTGATGGGATTTAAGTCAGGACTATTCACTGGCCAATCTAAAACATTGACGTTATTATCCGCCAAAAAACATCGAGTAA-GTGCAGCTGTATGGGGACGGGCGTTATCATTCATAAGTGTGACGTTCGGTCCGTGGCGCTGAATAAAAGAAACAACTTCTGGCTCAAGAACATTATTGACGTAGGTCTGGGCATTAATGTTTCCTTCAATAATGATTAGGAGGGTCTTGTGTA-CACCCATAATTCCACCCCCAGACTA--ATACTGAACCTCCCCCAAAGCGGTCTCTCTCAATGACGCACGCATCAGCATAACACTT---CCCC---------------C-GACAACGGTAAATTC----TCTCACGTGCGTCGGCATGACTCAAAT-TGAATCGAGACTTGTACGAAAACAATAC-T-GATCTCCAATCAGCTTGT-GGAAACGCCGGCAACGTCGGCACCAGTCGAGTCTCGC-AGCCCGATGACGTCTGGTTAAAATTTGGCCAAAGTATGG-T----CTGTACAGATGAATCGGGTC-AACATTTTGTCGCAATCGATTCCGAACTGT-------CTGATTCCATGC---CGT---CACTCTGTTGCTGATGCCAACAG---ATATC-------------TTGAACCATGATGTACCTATCATCGGCCTCAGTCGTCACATGCGGCAGACCGCTTCGGGGACGGTCCCAAGCGTTTCCCCTGATCTGGAAACATCTTCACAAACACTCAGTTGTCTTCCTCGTGCAGCCGAACAGCCAGGATACTTCGGCTACTGTAGAGCCAGCATTCAGCGTCCCGATTGCCTGATTTCTTTGGTCATTAATTAGT-----CATTGCAATTTGACTTGATTTTTTGTAATCTTTTTGTAATTTGCCTAATTTCTGGTGAGTAAGTGCAGTCAGATATCACCACAGGATATCGACCGTCGCTGCACGGAGTGC-------C--AA--TG-------CG-----CTTGGC------------TGATTATTGATAAAACCAACTTTGACAGGTACTCCAACGAATACATGTACATTATTTATAGCTTATTTTCACAAATTATTAATATTGAGGAAATAATT-AAAAAAA-A-AAAGTGGGTACTTTC-TTTTTTGGCTCAGTATATATA
gi|20 : TATAGCTTATTTTGACAAATTATTAATATTGAGGAAATAATT-AAAAAAATA-GAAGTGGGTACTTTC-TTTTTTGGCTCAGTATATA
gi|21 : tgGTCGTTATTTAGTCTTGGCATTGCAATTTGACTTGATTTTATGTGATATTTTTGTATTa
gi|3 : CAAAAAAGAAAATACCTACTCTATATTTATCTATCATTATAAAGAAAAGGAGTACCCATTCGGATTTAATTTTTTAATTGAAGTAAAGAACAATTTATTTTTGAAGTCCTTTGAAAATTTGAAGCAGCTGCAATATGTCTT-CATCGAAAAAAAAATAGACCGATATGACGTAGGGGTCGATTTCCGAAGTAAAAACGGTTTTGATAAATCTACACTTGTAATCGGGAAAGTTTAAAT--TTCAATATT-ATGGGATTTTTCTGCAGTGAAAATGTG-ATGTGGGTTGCAGTAAAAGGTTTAATATCTCATGTGTCCGCCGTGTTGCCCAATGCACGTCATG-ATCTGCCGTCGCATGCTGTCGACGTAACG-CTGTACGTA---CGGCGCCGGTAAAT-TGTCCCATTCAGCCTG-TAGGGCTGCTGAAAGGTCCTGCACCGTGTTGGT--TGCATAATTTGTTCTAACANNNNN-NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCATAAGTATGACGTCCGGTCCGTGGCGCTG-ATAAAAGAAATAACTTCTGGTTCAAGAACATTATTGACGTATGTCTGGGCATTGATGTTTCCTTCAATAACGATAAGGCGGGTCTTGTGTA-CATCCATAATTCCA-CCCCAGA--A-------GAACATCCCCCAAAGAGGTCTCTCTCAATGACGCACGCATCAGCGTAACGCTC---CCCC---------------C-GACGACGGTAAATTC----TCTAACGTCTGTCGGCGTCACTCTAAT-TGAATCGAGACTCGTCCGAAAACAATAC-T-GATCTCCAATCAGTACGTCGGAAACGCCGGCGACGTCGGCACCAGTCGAGTCTCGC-
gi|4 : atactaagcCAAAAAAGAAAGTACCCACTCTATAT--ATCTATCATTATAAAGAAAAGGAGTAAACATTCGGATTTAATTTTTTAATTGAAGTAAAAAACAATTTATTCTTGAAGTCCTACGAAAATTTGAAACAGCTGCAATATGTCTTTCATCGAA-------TGGACCGGTATGACGTAACTGTCGATTTCCGAAGTAATAACGGTTTTGATAAATCTGCACTTGTATTCGGGAAAGTTTAAAA--CTCAATTTT-ATGGGATTTTTCTGCAGTGAAAATGTG-ATGTGGGTTGCAGTATAAGATTTAATATCTCATTTTCCCGCCATGTTGCTCAATGTACGTTATG-ATCCGCCGTCGTATGCTGTCGACGTAACG-CTGTACGTA---CGGCGCCGGTAAAT-AGTCCCATTCAGCCAG-TAGGGCTGCTGAAAGGTCCTGCGCCGTGTTGAT--TGCATATTTTGTTCTAACA
gi|4 : attgagcACAACTTCTGGTTCAAGAACATTATTGACGTAGGTCTGGTCATTGATGTTTCATTCAATAACGATAAGTCGGGTCTTGTGTA-CATCCATAATTCCA-TCCCAGACTA--ATACTGAATCTCCCCCAAAGCGGTCTCTGTCAATGACGCACGCATCAGCGTAACGCTC---CCCC---------------C-GACGACGGTAAATTC-T---CTTACGTCCACCGGCATGACTCAAAT-TGAATCGACCCTAGTCCGAAAACAATAC-T-GATCTCCAATCAGCAGGTCGGAAACGCCGGnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnacaacttctggttcaagaacattattgacgtaggtctggtcattgatgtttcattcaataacgataagtcgggtcttgtgtacatccataattccatcccagactaatactgaatctcccccaaagcggtctctgtcaatgacgcacgcatcagcgtaacgctccccccgacgacggtaaattctcttacgtccaccggcatgactcaaattgaatcgaccctagtccgaaaacaatactgatctccaatcagcaggtcggaaacgccgg
gi|5 : attgagccaaaaaagaaagtacccactctatatatctatcattataaagaaaaggagtaaacattcggatttaattttttaattgaagtaaaaaacaatttattcttgaagtcctacgaaaatttgaaacagctgcaatatgtctttcatcgaatggaccggtatgacgtaactgtcgatttccgaagtaataacggttttgataaatctgcacttgtattcgggaaagtttaaaactcaattttatgggatttttctgcagtgaaaatgtgatgtgggttgcagtataagatttaatatctcattttcccgccatgttgctcaatgtacgttatgatccgccgtcgtatgctgtcgacgtaacgctgtacgtacggcgccggtaaatagtcccattcagccagtagggctgctgaaaggtcctgcgccgtgttgattgcatattttgttctaacannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnTCCTTTACCGTGTTGAT--TTCATAATTTGTTCTAACACGGCA-TCCTAACTGATCCTATATGTGATCGATGGGATTTAAGTCAGGACTATTCGCCGGCCAGTCTAAAATATTGACGTTATTATCCGCCAAAAAACGTCGAGTAA-GTGCAGCTGTATGGGGACGGGCGTTATCATGCATAAGTGTGACGTTCGGTCCGTGGCGATGAATAAAAGGAACAACTTCTGGTTCAAGAACATTATTGACGTAGGTCTGTGCATTGATGTTTCCTCCAATAACGATTAGGCGGGTCTTGTGTA-CATCCATAATGCCA-CCCCAGACTA--TTACTGAACCTCCCCCAAAGCGGTCTCTCTCAATGACGCACGCATCAGCGTAACGCTC---CCCC---------------C-GACGACGGTATATTC----TCTCACGTCCATCGGCATGACTCAAAT-TGAATCGAGACTCGTCCGAAAACAATAC-T-GATCTCCAATCAGCACGTCGGAAACGCC--TGACGTCTG-----GT------------------TAAAATTTGGCCAAAGT------ACAGTCT-G-T--------ACGGACGAATCTGGTC-ATCATTTTGTCGCAATTGGTTCCGAACTGTCTGTGCACTGATTCCATGCTGTCGC---C---CTGTTGCTGATGCCGACAG---ACGTCGGTTACGTAAGTGTTGAACCGTGATGTACCGATCATCGACCGCAGTCGTCACACATGACCGACCGCTTCGGGGACGGTCCCAAACGTTTCCCCTGATCTGGAAACGTCTTCGCAAACGCTCAATTGTCTTCCTCGTGCAGCCGAACAGCCGGGATACTTCGGCTACTGTAGAGCCAGAATTCAGCATCCCGATCGCCTGATTTCTTTGGTCGTTATTTAGTCTTGACATTGCAATTTGATTTGATTTTATGTGATCTTTTTGTATTGT
gi|6 : ACCTGATGAGTCCTCCATTCTAATTAATGCATG-CACGCATTCTTCGTCTCATACTCCTAACGTAAGGTCTG-ATGTAAGCTGGTGCC----AATGTATTCCACTCACGCTG-AAGAGCTGCAGCTAGGT--TG-ACTGTGTTGATGTTGCC--ATTTTTTCGAACACAATGGTCCTAATTCGTTCCAATTATGTTCAATGGGAGACGAGTCTGGACTGTTGGCTGGCCAGTTCAACAGATTAACGTTGTTCTGCGCAAGAAAATGACGAGTAACGT-TAGCCGTAT--GAAC--------TCTTAC----GTCTGCAGCT-AGCCCATGTTGTTGTATAAATGGTAGTGCCTCTGGAACAAGGATCTGGTTGATATACGCCTGTACAGTCACGTTGCCATTGACTGTAGTTAGTCGTTGCCCGT-TACCGTCCATTATACCT-CACCATACAAGCACACT--ACCACCACCAAAATGATCTCTTTCCAAAATGCAAGCATCCGCGAATTG-TC---CCCT---------------T-TACGTCTGTATACCCGT--TCCCAC--CCATCAGCGTGGCTATGAT-TTAAC-----TTCATCAGTAAAGAGAACAT-GAT-TCCAGTCTGCTCTTTTAAAATGCAAGTGGCGTCTGCACCAATTAACTTGTGC-ATCTCGATGACGTTGAGTAAGGATCTGCCCAAAATAT-G-GAAGATTG-GCG--CGAAT-GGGTCTGGCATTGAATCTCAGTCTCTTCCTCATGGTTTGTCCGGAAATACCATAT---CTT---CTAGCTGTTACTGTCGCTGGGAGAAAATGTCG---ACGTAGGTGTatagc
gi|7 : taggACGTGGCCGACCGCTTTGAGGACGGTCCCAAACGTTTCCCCTGGTCTGGAAACGTCTTCGCTAACGCTCAATTGTCTTCCTCGTGCAGCCACACAGCCGGAATACTTCGGCTACTGTAGAGCCAGCATTCAGTATCCCGATCGCCTGATTTTTTTGGTCGTTATTTAGTCTTGGTATTGCAGTTTGACTTGATTTTATGTGATATTTTTGTATTGTGTCTAATTTCTGGTCAACAAGTGCAGTCAGATACCACCACCGGATATCGACCGTCGCTGCACGGAGCGCACATG--CAAAA--CAAGTTAATCGGGCCTCTCGGCTAAGCGCTTGACTGATAATTGATAAAACCAAAATTGACAGGTACTCCAACGAATACATTCACATTATTTATAGCTTATTTTGACAAATTATTAATATTGAAGAAATAATTCAAAAAAATA-AAAGTGGGTACTTTC-TTTTTTGGCTCAGTGTACATA
gi|8 : AAAAAAAAACTATCCACTCTATAT--ATCTATCATTATAAAGAAAAGGAGTATACATTCGGATTTAATTTTTTAACTGAAGTAAAGAACAATTTATTCTTAAAGT-----------TTGAAGCAGCTGCAATATGTCTTTCATCGAAAAAAA--TGGACCGATATGACGTAGGGGTCGATTTCCGAAGTAACAACGGTTTTGATGAATCTGCACTTGTAAGCGGGAAAGTTTAAAA--CTCAATTTT-ATGGGATTTTTTTGAAGTGAATATGTG-ATGTGGGTTGCAGTAAAAGATTTAATATCTCATGTGTCCGCCGTGTTGCCCAATGCACGTCATG-ATCCGCCGTCGCATACTGTCGACGTAACG-CTGTACGTA---CGGCACCGGTAAAT-TGTCCCATTCAGCCTG-TAGGGCTGCTGAAAGGTCCTGcat
gi|9 : actgagtTCAGTACTATTCTTTGGCCAGTCATAAACATTGACGTTATTATCCG---AGAAACGTCGAGTAA-GTGCAGCTGTATGGGGACGGGCGTTATCATGCATAAGTGTGACGTTCGGTCCGTGGCGCTGAATAAAAGAAACCACTTCTGGTTCAAGAACATTTCTGACGTAGGTCTAGGCATTGATGTTTCCTTCAATAACGATTAGGCGGGTCTTGTTTA-CATCCATAATTCCA-CCCCAGACTA--ATACTGCAC
gi|9 : CTC---CCCC---------------CTGACGATGGTAAATTC-T---CTTACGTCCGTC-GCATGACTCAAAT-TGAATCGATACTCGTCCGAAAACAATAC-T-CATCTCCAATCAGCACGTCGGAAACgcacgcatcagcgtaacaccgaccccccccccccccccccccccccctcccccctgacgatggtaaattctcttacgtccgtcgcatgactcaaattgaatcgatactcgtccgaaaacaatactcatctccaatcagcacgtcggaaac
blockSeqs : TT G G AA T AT C . G C T T AGC A G C C GT G C C A G C C GCA C C C G A . . T T GTAAT C G G C G A C C G C C AG T T G G GAAGATTG G C CTGG C G A TGT CACT AAA GGTT ACCA T G C T CG A G AAAAA A C T T
blockSeqs : . G G . A . . . A . . T . G . . C . . . C A G . . A A C C G A . . . T ATAAT A G . C G . . C G C C AT C C C . TCTGT G C CAA T C G . CTAG . G ACCG G G C T CA C G CAAAA G . . .
blockSeqs : . T G . A . . . A . . T . G . . C . . . C T G . . A C C T A T . . . A GTT T G . T G . . C G C T . A . . . T . . CAT . . . . C . . G C T TA A T CAAAA A . . .
blockSeqs : . A . . A . . . G . . T . G . . T . . . C A G . . T C C T A T . . . A T C G . T G . . C A . . C A CAAAA A . . .
blockSeqs : . . . . . . . . . . . . . . . . . . . G . . A T C T A T . . . A T C G . T C . . C . A . CAA . . . .
blockSeqs : T . . . . T A T . . . T T T . . T G . . .
blockSeqs : . . . . A C A . . . T T . . . C T . . .
blockSeqs : . . . A T . . . T .
blockSeqCons : *** ***************
originalCons : CAAAAAAGAAAGTACCCACTCTATAT--ATCTATCATTATAAAGAAAAGGAGTATACATTCGGATTTAATTTTTTAATTGAAGTAAAGAACAATTTATTCTTGAAGTCCTGTGAAAATTTGAAGCAGCTGCAATATGTCTTTCATCGAAAAAAA--TGGACCGATATGACGTAGGGGTCGATTTCCGAAGTAACAACGGTTTTGATAAATCTGCACTTGTAATCGGGAAAGTTTAAAA--CTCAATTTT-ATGGGATTTTTCTGCAGTGAAAATGTG-ATGTGGGTTGCAGTAAAAGATTTAATATCTCATGTGTCCGCCGTGTTGCCCAATGCACGTCATG-ATCCGCCGTCGCATGCTGTCGACGTAACG-CTGTACGTA---CGGCGCCGGTAAAT-TGTCCCATTCAGCCTG-TAGGGCTGCTGAAAGGTCCTGCACCGTGTTGAT--TGCATAATTTGTTCTAACACGGCG-TCCTAACTCATCCCATATGTGTTCGATGGGATTTAAGTCAGGACTATTCGCCGGCCAGTCTAAAACATTGACGTTATTATCCGCCAAAAAACGTCGAGTAA-GTGCAGCTGTATGGGGACGGGCGTTATCATGCATAAGTGTGACGTTCGGTCCGTGGCGCTGAATAAAAGGAACAACTTCTGGTTCAAGAACATTATTGACGTAGGTCTGGGCATTGATGTTTCCTTCAATAACGATTAGGCGGGTCTTGTGTA-CATCCATAATTCCA-CCCCAGACTA--ATACTGAACCTCCCCCAAAGCGGTCTCTCTCAACGACGCACGCATCGGCGNAACGCTC---CCCC---------------C-GACGACGGTANATTC-T--TCTCACGTCCGTCGGCATGACTCAAAT-TGAATCGAGACTCGTCCGAAAACAATAC-T-GATCTCCAATCAGCACGTCGGAAACGCCGGCGACGTCGGCACCAGTCGAGTCTCGC-A-CCCGATGACGTCTGGTTAAAATTTGGCCAAAGTAT-G-T----CTGTACGGACGAATCGGGTC-GNCATTTTGTCGCAATCGGTTCCGAACTGTCTGTGCGCTGATTCCATGC---CGT---C---CTGTTGCTGATGCCGACAG---ACGTCGGTTACGTAAGTGTTGAACCGTGATGTACC-ATCATCGGCCGCAGTCGTCACACGTGGCCGACCGCTTCGGGGACGGTCCCAAACGTTTCCCCTGATCTGGAAACGTCTTCGCAAACGCTCAATTGTCTTCCTCGTGCAGCCGAACAGCCGGGATACTTCGGCTACTGTAGAGCCAGCATTCAGCGTCCCGATCGCCTGATTTCTTTGGTCGTTATTTAGTCTTGGCATTGCAATTTGACTTGATTTTATGTGATNTTTTTGTATTGTGCCTAATTTCTGGTCAATAAGTGCAGTCAGATACCACCACCGGATATCGACCGTCGCTGCACGGAGCGCACGTG--C--AA--CAAGTTAATCGGGCCTCTCGGCTAAGCGCTTGGCTGATTATTGATAAAACCAACTTTGACAGGTACTCCAACGAATACATGTACATTATTTATAGCTTATTTTGACAAATTATTAATATTGAGGAAATAATT-AAAAAAATA-AAAGTGGGTACTTTC-TTTTTTGGCTCAGTATATATA
finalCons : CAAAAAAGAAAGTACCCACTCTATAT--ATCTATCATTATAAAGAAAAGGAGTATACATTCGGATTTAATTTTTTAATTGAAGTAAAGAACAATTTATTCTTGAAGTCCTGTGAAAATTTGAAGCAGCTGCAATATGTCTTTCATCGAAAAAAA--TGGACCGATATGACGTAGGGGTCGATTTCCGAAGTAACAACGGTTTTGATAAATCTGCACTTGTAATCGGGAAAGTTTAAAA--CTCAATTTT-ATGGGATTTTTCTGCAGTGAAAATGTG-ATGTGGGTTGCAGTAAAAGATTTAATATCTCATGTGTCCGCCGTGTTGCCCAATGCACGTCATG-ATCCGCCGTCGCATGCTGTCGACGTAACG-CTGTACGTA---CGGCGCCGGTAAAT-TGTCCCATTCAGCCTG-TAGGGCTGCTGAAAGGTCCTGCACCGTGTTGAT--TGCATAATTTGTTCTAACACGGCG-TCCTAACTCATCCCATATGTGTTCGATGGGATTTAAGTCAGGACTATTCGCCGGCCAGTCTAAAACATTGACGTTATTATCCGCCAAAAAACGTCGAGTAA-GTGCAGCTGTATGGGGACGGGCGTTATCATGCATAAGTGTGACGTTCGGTCCGTGGCGCTGAATAAAAGGAACAACTTCTGGTTCAAGAACATTATTGACGTAGGTCTGGGCATTGATGTTTCCTTCAATAACGATTAGGCGGGTCTTGTGTA-CATCCATAATTCCA-CCCCAGACTA--ATACTGAACCTCCCCCAAAGCGGTCTCTCTCAACGACGCACGCATCGGCGNAACGCTC---CCCC---------------C-GACGACGGTANATTC-T--TCTCACGTCCGTCGGCATGACTCAAAT-TGAATCGAGACTCGTCCGAAAACAATAC-T-GATCTCCAATCAGCACGTCGGAAACGCCGGCGACGTCGGCACCAGTCGAGTCTCGC-A-CCCGATGACGTCTGGTTAAAATTTGGCCAAAGTAT-G-T----CTGTACGGACGAATCGGGTC-GNCATTTTGTCGCAATCGGTTCCGAACTGTCTGTGCGCTGATTCCATGC---CGT---C---CTGTTGCTGATGCCGACAG---ACGTCGGTTACGTAAGTGTTGAACCGTGATGTACC-ATCATCGGCCGCAGTCGTCACACGTGGCCGACCGCTTCGGGGACGGTCCCAAACGTTTCCCCTGATCTGGAAACGTCTTCGCAAACGCTCAATTGTCTTCCTCGTGCAGCCGAACAGCCGGGATACTTCGGCTACTGTAGAGCCAGCATTCAGCGTCCCGATCGCCTGATTTCTTTGGTCGTTATTTAGTCTTGGCATTGCAATTTGACTTGATTTTATGTGATNTTTTTGTATTGTGCCTAATTTCTGGTCAATAAGTGCAGTCAGATACCACCACCGGATATCGACCGTCGCTGCACGGAGCGCACGTG--C--AA--CAAGTTAATCGGGCCTCTCGGCTAAGCGCTTGGCTGATTATTGATAAAACCAACTTTGACAGGTACTCCAACGAATACATGTACATTATTTATAGCTTATTTTGACAAATTATTAATATTGAGGAAATAATT-AAAAAAATA-AAAGTGGGTACTTTC-TTTTTTGGCTCAGTATATATA
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|13 ): CTGCATTAAGGTTGCCCGGCTTGTCCATTATGCCCGCCCAAACCATGACGCTACCACCTTCAAACCTGTCTCGTTCCTGCAAGCAGCATTGGGCAAATCTCTCGTTCCGTCGCCTGTAAACTCTGACCCTACCGTCAGCAAAGCTGACCATGAAGCGTGACTCATCGGTAAAA
Unaligned ( gi|16 ): CTGTCTCGTTCCTGCACGCAGCATTGGGCAAATCTCTCGTTCCGTCGCCTGTAAACTCTGACCCTATCATCAGCAAAGCTGACCATGAAGCGTGACTCATCGGTAAAAATCACGTT
Unaligned ( gi|18 ): AATTGTTCCCCTTTACGTCTATATACCCGTTCCCGCCTGTCAGCGTGGCTAAGGTTAAACTTTGATTCATCAGCAGAGAGAACGTGATTCCAGTCTGCTCTTCTTAA
Alignments
lowQualScore : 111 222222222222222 44444 222 1 3333333333 2222 111 4444444 111 1111 2 222222222
lowQualScore : 99 0 1 2 99 3 99 8 8 2 6 6 3 111 1 6 6 1 99 8 00 6 0 0 0 2 3 0 1 5 5 999 1 2 3 3 1 0 777 777777777777777 4 1 00000 7 1 0 0 4 1 3 5 5 5 3 3 3 0 555 0 0 1 7 2 0 7777777777 2 2 1111 0 6 2 4 777 2222222 777 7777 0 7777 6 0 2 0 0 2 3 44 1 1 222222222 1 6 6 6
lowQualScore : .. . . . .. . .. . . . . . . ... . . . . .. . .. . . . . . . . . . . ... . . . . . . ... ............... . . ..... . . . . . . . . . . . . . . ... . . . . . . .......... . . .... . . . . ... ....... ... .... . .... . . . . . . . .. . . ......... . . . .
lowQualScore : 22 3 0 5 22 5 22 0 0 2 7 7 2 777 0 7 7 0 22 0 33 7 2 2 2 5 5 5 4 0 0 666 0 5 1 1 0 8 888 888888888888888 4 0 22222 4 1 9 1 4 4 9 0 0 6 7 2 2 6 000 2 2 2 0 5 0 2222222222 5 5 2222 2 5 5 2 555 5555555 555 2222 8 7777 7 2 5 2 2 5 2 55 0 0 000000000 7 7 7 7
consensus : CAAAAAAGAAAGTACCCACTCTATAT--ATCTATCATTATAAAGAAAAGGAGTATACATTCGGATTTAATTTTTTAATTGAAGTAAAGAACAATTTATTCTTGAAGTCCTGTGAAAATTTGAAGCAGCTGCAATATGTCTTTCATCGAAAAAAA--TGGACCGATATGACGTAGGGGTCGATTTCCGAAGTAACAACGGTTTTGATAAATCTGCACTTGTAATCGGGAAAGTTTAAAA--CTCAATTTT-ATGGGATTTTTCTGCAGTGAAAATGTG-ATGTGGGTTGCAGTAAAAGATTTAATATCTCATGTGTCCGCCGTGTTGCCCAATGCACGTCATG-ATCCGCCGTCGCATGCTGTCGACGTAACG-CTGTACGTA---CGGCGCCGGTAAAT-TGTCCCATTCAGCCTG-TAGGGCTGCTGAAAGGTCCTGCACCGTGTTGAT--TGCATAATTTGTTCTAACACGGCG-TCCTAACTCATCCCATATGTGTTCGATGGGATTTAAGTCAGGACTATTCGCCGGCCAGTCTAAAACATTGACGTTATTATCCGCCAAAAAACGTCGAGTAA-GTGCAGCTGTATGGGGACGGGCGTTATCATGCATAAGTGTGACGTTCGGTCCGTGGCGCTGAATAAAAGGAACAACTTCTGGTTCAAGAACATTATTGACGTAGGTCTGGGCATTGATGTTTCCTTCAATAACGATTAGGCGGGTCTTGTGTA-CATCCATAATTCCA-CCCCAGACTA--ATACTGAACCTCCCCCAAAGCGGTCTCTCTCAACGACGCACGCATCGGCGNAACGCTC---CCCC---------------C-GACGACGGTANATTC-T--TCTCACGTCCGTCGGCATGACTCAAAT-TGAATCGAGACTCGTCCGAAAACAATAC-T-GATCTCCAATCAGCACGTCGGAAACGCCGGCGACGTCGGCACCAGTCGAGTCTCGC-A-CCCGATGACGTCTGGTTAAAATTTGGCCAAAGTAT-G-T----CTGTACGGACGAATCGGGTC-GNCATTTTGTCGCAATCGGTTCCGAACTGTCTGTGCGCTGATTCCATGC---CGT---C---CTGTTGCTGATGCCGACAG---ACGTCGGTTACGTAAGTGTTGAACCGTGATGTACC-ATCATCGGCCGCAGTCGTCACACGTGGCCGACCGCTTCGGGGACGGTCCCAAACGTTTCCCCTGATCTGGAAACGTCTTCGCAAACGCTCAATTGTCTTCCTCGTGCAGCCGAACAGCCGGGATACTTCGGCTACTGTAGAGCCAGCATTCAGCGTCCCGATCGCCTGATTTCTTTGGTCGTTATTTAGTCTTGGCATTGCAATTTGACTTGATTTTATGTGATNTTTTTGTATTGTGCCTAATTTCTGGTCAATAAGTGCAGTCAGATACCACCACCGGATATCGACCGTCGCTGCACGGAGCGCACGTG--C--AA--CAAGTTAATCGGGCCTCTCGGCTAAGCGCTTGGCTGATTATTGATAAAACCAACTTTGACAGGTACTCCAACGAATACATGTACATTATTTATAGCTTATTTTGACAAATTATTAATATTGAGGAAATAATT-AAAAAAATA-AAAGTGGGTACTTTC-TTTTTTGGCTCAGTATATATA
Reference ( family-2173 ) : CAAAAAAGAAAGTACCCACTCTATAT--ATCTATCATTATAAAGAAAAGGAGTATACATTCGGATTTAATTTTTTAATTGAAGTAAAGAACAATTTATTCTTGAAGTCCTGTGAAAATTTGAAGCAGCTGCAATATGTCTTTCATCGAAAAAAA--TGGACCGATATGACGTAGGGGTCGATTTCCGAAGTAACAACGGTTTTGATAAATCTGCACTTGTAATCGGGAAAGTTTAAAA--CTCAATTTT-ATGGGATTTTTCTGCAGTGAAAATGTG-ATGTGGGTTGCAGTAAAAGATTTAATATCTCATGTGTCCGCCGTGTTGCCCAATGCACGTCATG-ATCCGCCGTCGCATGCTGTCGACGTAACG-CTGTACGTA---CGGCGCCGGTAAAT-TGTCCCATTCAGCCTG-TAGGGCTGCTGAAAGGTCCTGCACCGTGTTGAT--TGCATAATTTGTTCTAACACGGCG-TCCTAACTCATCCCATATGTGTTCGATGGGATTTAAGTCAGGACTATTCGCCGGCCAGTCTAAAACATTGACGTTATTATCCGCCAAAAAACGTCGAGTAA-GTGCAGCTGTATGGGGACGGGCGTTATCATGCATAAGTGTGACGTTCGGTCCGTGGCGCTGAATAAAAGGAACAACTTCTGGTTCAAGAACATTATTGACGTAGGTCTGGGCATTGATGTTTCCTTCAATAACGATTAGGCGGGTCTTGTGTA-CATCCATAATTCCA-CCCCAGACTA--ATACTGAACCTCCCCCAAAGCGGTCTCTCTCAACGACGCACGCATCGGCGNAACGCTC---CCCC---------------C-GACGACGGTANATTC-T--TCTCACGTCCGTCGGCATGACTCAAAT-TGAATCGAGACTCGTCCGAAAACAATAC-T-GATCTCCAATCAGCACGTCGGAAACGCCGGCGACGTCGGCACCAGTCGAGTCTCGC-A-CCCGATGACGTCTGGTTAAAATTTGGCCAAAGTAT-G-T----CTGTACGGACGAATCGGGTC-GNCATTTTGTCGCAATCGGTTCCGAACTGTCTGTGCGCTGATTCCATGC---CGT---C---CTGTTGCTGATGCCGACAG---ACGTCGGTTACGTAAGTGTTGAACCGTGATGTACC-ATCATCGGCCGCAGTCGTCACACGTGGCCGACCGCTTCGGGGACGGTCCCAAACGTTTCCCCTGATCTGGAAACGTCTTCGCAAACGCTCAATTGTCTTCCTCGTGCAGCCGAACAGCCGGGATACTTCGGCTACTGTAGAGCCAGCATTCAGCGTCCCGATCGCCTGATTTCTTTGGTCGTTATTTAGTCTTGGCATTGCAATTTGACTTGATTTTATGTGATNTTTTTGTATTGTGCCTAATTTCTGGTCAATAAGTGCAGTCAGATACCACCACCGGATATCGACCGTCGCTGCACGGAGCGCACGTG--C--AA--CAAGTTAATCGGGCCTCTCGGCTAAGCGCTTGGCTGATTATTGATAAAACCAACTTTGACAGGTACTCCAACGAATACATGTACATTATTTATAGCTTATTTTGACAAATTATTAATATTGAGGAAATAATT-AAAAAAATA-AAAGTGGGTACTTTC-TTTTTTGGCTCAGTATATATA
gi|1 : CAAAAAAGAAAGTACCCACTCTATAT--ATATATCATTATAAAGAACATGAGTATACATTCGGATTTAATTTTT-AATTTAAGTCAAGAACAATTTATTCTTGAAGTCCTGTGAAAATTTGAAGCAGCTGCAATATATCTTTCATGGAAAAAAA--TGGACCGATATGACGTAGGGGTCGATTTTCGAAGTAACAACGGTTTTGATAAATCTGCACTTGTAATCGGGAAAGTTTAAAA--CTCAA-TTT-ATGGGATTCTTCTGCAGTGAAAATGTGAATGTGGGTTGCAGTAAAAGATTTAATATCTCATGTGTCCGCCATGTTGCCCAATGCACGTCATG-ATCCACCGTCGCATGCTGTCGACGTA------------A---CGGCGCCGGTAAAT-TGTCCAATTTAGCCTG-AAGGGCTGCTGAAAGGTCCTGCACCGTGTTGAT--TGCATAATTTGGTCTAACACGGCG-TCCTAACTCATCCCATATGTGTTCGATGGGATTTAAGTCAGGACTATTCGCCAGCCAGTCTAAAACATTGACTTTATTATCCGCCAAGAAACGTCGAGTAA-GTGCAGCTGTATGGGGACGGGTGTTATCATGCATAAGTGTGAAGATGTGTCCTTGACGCTGAATAAAATGAACAACTTCTGGTTCAAGAACATTATTGACGTAGGTATGGACATTGATGTTTCCTTCAATAACGATTAGGCGGGTCATGTAAA-CATCCATAATTCCA-CCCAAGACTA--ATACTGAACCTCCCCAAAAGGGGTCTCTCTCAATGGCGCACGCATCAGCGAAACGCCCACGCCCCCCCCCCCCCCCCCCAC-GACGACGGTAGATTA----TCTCACGTCTATCGGCATGAATCAAAT-TGAA---A---TCGTCCGAAAACAATAC-T-------------GCACGTCGGAAACGCCAGCGACGTCGGTACCAGTCGAGTCTCGCAA-CCCGATGACGTCTTGTTAAAATTTGGCCAACGTAC-GTT----CTGTACGGACAAATCGGGT----CATTTTGTCGCAATCGGTTCCGAACTGTCTGTGCACTGATTAAATGC---CGTCGCC---CTGTTGCTGATGCCGACAG---ACGTCGGTTACGTAAGTGTTGA--------------ATTATCGGCCGCAGTCGTCACACGTGGCTGACCGCTTCGGGGACGGTCCCAAACGTTTCCCGTCATCTGAAAACGTCTTCGCAAACGCTCAATTATCTTCCTCGTGCAGCCGAACA----------TT---------------CAGCAT-------CCCGATCGCCTGATTTCTTTGGTCGTTACTTAGTCTTGGCATTGCAATTTGACGTGATTTTATGTGATCTTTTTGTATAATGCCAAATTTCTGGTCAATAAGTGCAGTCAGATACCACCACCTGATATCGACCGTCGCTGCACGGAGTGCACGTG--CAAAA--CAAGTTAATCGGGCCTCCCGGCTAAGCGCTTGGCTGATTATTGATAAAACCAACTTTGACAGGTACTCTTACGAATACATGTACATTAATTATAGCTTATTTTGACAAATTGTTGATATTGAGGAAATAATT-TAAAAAATA-AAAGGGGGTACTTTC-TTTTTTGTCTCAGTGTAT
gi|10 : actgagcGGTCTTTATTTAGTCTTGGCATTGCAACTTGACTTGATATTATGTGATATTTTTGTATTGTGCCTAATTTCTGGTCAGTAAGTGCAGTCAGATACCACCACCGGATATCGACCGTAGCTGCACGGAGCGCACGTGAAA--AA--CAAGTTAATCGGGCCTCTCGGCTAAGCGCTTGACTGATTATTGATTAAATCAACTTTGACAGGTACTCCAACGAATACATGTACATTATTTATAGTT--TTTTGACAAATTATTCATGTTGAGGAAATAATT-CAAAAAAT--ACTGTGGATACTTTC-TTTTTTGGCTCAGTAt
gi|11 : ATAATG-ATAGATATATAGAGTGGGTACTTTCTTTTTTTGGTTCAGTATAattta
gi|11 : AAAAAAGAAAGTACCCACTCTATAT--ATCTATCATTATAAAGAAAAAGAGTACACATTTGGATTTAATTTT-TAATTGAAGTAAAGAACAATTTATTTTTGAAGTCCTGTGAAAATTTGAAGCAGCTGCAATATGTCTTTCATCG-AAAAAA--TGGACCGAAATGACGTAAGGGTCGATTTCCGAAGT-ACGACGGTTTTGATCAATCTGCACTTGTAATCGGGAAAGTTTAAAAATCTCAGTTTaaagaaaaagagtacacatttggatttaatttttaattgaagtaaagaacaatttatttttgaagtcctgtgaaaatttgaagcagctgcaatatgtctttcatcgaaaaaatggaccgaaatgacgtaagggtcgatttccgaagtacgacggttttgatcaatctgcacttgtaatcgggaaagtttaaaaatctcagttt
gi|12 : tatactgaaccaATTGTGCCTAATTTCTGGTCGATAAGTGCAGCCATATACCACCACCGGATATCAACCATCGCTGCACGGAGCGCACGTG--C--AAAACAGGTTAATCAGGCCTCTCGGCTAAGCGCTTGGCTGATTATTGATAAAACCAACTTTGACAGGTACTCCAACGAATACATGTACACTATTTATAGCTTATTTTGACAAATTATTAAAAT
gi|14 : CTAATTTCTTGTCAATAAGTGCCGTCATATACCACCACCTGATATCGACCGTCGCTGCACGGAGCGCACTTG--C--AAAACAAGTTAATCGGGCCTCTCGGCTAAGCGCTTGGCTGATTATTGATAAAACAAACTTTGACAGGTACTCCAACGAAAACATGTACATTATTTAT
gi|15 : TCT-TCTCAACAATGCAACAATCGGCGAATCTTTC---ATTT---------------T-TACGCCTGTATACCCGTAATCT----TCCGTCAGCATGACT-AACTGTGAACCGAGATTCATCAGTGAACAAAAC-TCGGT-TCCA
gi|17 : ctgtTAAATGGAATGACTTCAGCATCTAAAACCTCATCAATGTTCCTCTGAGCATTCAAATTCCCACGAATGACAAAGAGTCAGGTCTTTTGTC-CCCCCATGATCCCA-CCCCg
gi|19 : TCT-TCTCAACAATGCAACAATCGGCGAATCTTTC---ATTT---------------T-TACGCCTGTATACCCATAATCT----TCCGTCAGCATGACTTACTG-TGAACCGAGATTCATCgaatct
gi|2 : tgtCAAAAAAGAAAGTACTCACTCTATAT--ATCTATCATTATAAAGAAAAGGTGTATACATTCGGATTTAATTTTTTAATTGAAGTAAAGAACAATTTATTCTTGAAATCCTGT-AAAATTTGAAGCTGCTGCAATATGTCTTTCATCTAAAAAAA--TGGACCGATATTACGTAGGGGTCGATTTGC-AAGTTACAACGGTTTTGATAAATCTGCACTTGTAATCGGGAAAGTTTAAAA--CATGATTTTCATGGGATTTTTCTGCAGTGAAAATGTG-ATGTAGGTTGCAGTAAAAGATTTAATATCTC-----T------TGTTGCCCAATGCACGTCATG-ATCCGCCATTGCATGCTGTCGACGTAACG-CTATACGTA---CGGCACCAGTATAT-TGTCACATTCAGTCTTCTAGGGCTGCTGAAAGGTCCTGCACCGTGTTGAT--TGCATAATTTGTTCTAACACGGCG-TCCTAACTCATCTCATATGTATTTGATGGGATTTAAGTCAGGACTATTCACTGGCCAATCTAAAACATTGACGTTATTATCCGCCAAAAAACATCGAGTAA-GTGCAGCTGTATGGGGACGGGCGTTATCATTCATAAGTGTGACGTTCGGTCCGTGGCGCTGAATAAAAGAAACAACTTCTGGCTCAAGAACATTATTGACGTAGGTCTGGGCATTAATGTTTCCTTCAATAATGATTAGGAGGGTCTTGTGTA-CACCCATAATTCCACCCCCAGACTA--ATACTGAACCTCCCCCAAAGCGGTCTCTCTCAATGACGCACGCATCAGCATAACACTT---CCCC---------------C-GACAACGGTAAATTC----TCTCACGTGCGTCGGCATGACTCAAAT-TGAATCGAGACTTGTACGAAAACAATAC-T-GATCTCCAATCAGCTTGT-GGAAACGCCGGCAACGTCGGCACCAGTCGAGTCTCGC-AGCCCGATGACGTCTGGTTAAAATTTGGCCAAAGTATGG-T----CTGTACAGATGAATCGGGTC-AACATTTTGTCGCAATCGATTCCGAACTGT-------CTGATTCCATGC---CGT---CACTCTGTTGCTGATGCCAACAG---ATATC-------------TTGAACCATGATGTACCTATCATCGGCCTCAGTCGTCACATGCGGCAGACCGCTTCGGGGACGGTCCCAAGCGTTTCCCCTGATCTGGAAACATCTTCACAAACACTCAGTTGTCTTCCTCGTGCAGCCGAACAGCCAGGATACTTCGGCTACTGTAGAGCCAGCATTCAGCGTCCCGATTGCCTGATTTCTTTGGTCATTAATTAGT-----CATTGCAATTTGACTTGATTTTTTGTAATCTTTTTGTAATTTGCCTAATTTCTGGTGAGTAAGTGCAGTCAGATATCACCACAGGATATCGACCGTCGCTGCACGGAGTGC-------C--AA--TG-------CG-----CTTGGC------------TGATTATTGATAAAACCAACTTTGACAGGTACTCCAACGAATACATGTACATTATTTATAGCTTATTTTCACAAATTATTAATATTGAGGAAATAATT-AAAAAAA-A-AAAGTGGGTACTTTC-TTTTTTGGCTCAGTATATATA
gi|20 : TATAGCTTATTTTGACAAATTATTAATATTGAGGAAATAATT-AAAAAAATA-GAAGTGGGTACTTTC-TTTTTTGGCTCAGTATATA
gi|21 : tgGTCGTTATTTAGTCTTGGCATTGCAATTTGACTTGATTTTATGTGATATTTTTGTATTa
gi|3 : CAAAAAAGAAAATACCTACTCTATATTTATCTATCATTATAAAGAAAAGGAGTACCCATTCGGATTTAATTTTTTAATTGAAGTAAAGAACAATTTATTTTTGAAGTCCTTTGAAAATTTGAAGCAGCTGCAATATGTCTT-CATCGAAAAAAAAATAGACCGATATGACGTAGGGGTCGATTTCCGAAGTAAAAACGGTTTTGATAAATCTACACTTGTAATCGGGAAAGTTTAAAT--TTCAATATT-ATGGGATTTTTCTGCAGTGAAAATGTG-ATGTGGGTTGCAGTAAAAGGTTTAATATCTCATGTGTCCGCCGTGTTGCCCAATGCACGTCATG-ATCTGCCGTCGCATGCTGTCGACGTAACG-CTGTACGTA---CGGCGCCGGTAAAT-TGTCCCATTCAGCCTG-TAGGGCTGCTGAAAGGTCCTGCACCGTGTTGGT--TGCATAATTTGTTCTAACANNNNN-NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCATAAGTATGACGTCCGGTCCGTGGCGCTG-ATAAAAGAAATAACTTCTGGTTCAAGAACATTATTGACGTATGTCTGGGCATTGATGTTTCCTTCAATAACGATAAGGCGGGTCTTGTGTA-CATCCATAATTCCA-CCCCAGA--A-------GAACATCCCCCAAAGAGGTCTCTCTCAATGACGCACGCATCAGCGTAACGCTC---CCCC---------------C-GACGACGGTAAATTC----TCTAACGTCTGTCGGCGTCACTCTAAT-TGAATCGAGACTCGTCCGAAAACAATAC-T-GATCTCCAATCAGTACGTCGGAAACGCCGGCGACGTCGGCACCAGTCGAGTCTCGC-
gi|4 : atactaagcCAAAAAAGAAAGTACCCACTCTATAT--ATCTATCATTATAAAGAAAAGGAGTAAACATTCGGATTTAATTTTTTAATTGAAGTAAAAAACAATTTATTCTTGAAGTCCTACGAAAATTTGAAACAGCTGCAATATGTCTTTCATCGAA-------TGGACCGGTATGACGTAACTGTCGATTTCCGAAGTAATAACGGTTTTGATAAATCTGCACTTGTATTCGGGAAAGTTTAAAA--CTCAATTTT-ATGGGATTTTTCTGCAGTGAAAATGTG-ATGTGGGTTGCAGTATAAGATTTAATATCTCATTTTCCCGCCATGTTGCTCAATGTACGTTATG-ATCCGCCGTCGTATGCTGTCGACGTAACG-CTGTACGTA---CGGCGCCGGTAAAT-AGTCCCATTCAGCCAG-TAGGGCTGCTGAAAGGTCCTGCGCCGTGTTGAT--TGCATATTTTGTTCTAACA
gi|4 : attgagcACAACTTCTGGTTCAAGAACATTATTGACGTAGGTCTGGTCATTGATGTTTCATTCAATAACGATAAGTCGGGTCTTGTGTA-CATCCATAATTCCA-TCCCAGACTA--ATACTGAATCTCCCCCAAAGCGGTCTCTGTCAATGACGCACGCATCAGCGTAACGCTC---CCCC---------------C-GACGACGGTAAATTC-T---CTTACGTCCACCGGCATGACTCAAAT-TGAATCGACCCTAGTCCGAAAACAATAC-T-GATCTCCAATCAGCAGGTCGGAAACGCCGGnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnacaacttctggttcaagaacattattgacgtaggtctggtcattgatgtttcattcaataacgataagtcgggtcttgtgtacatccataattccatcccagactaatactgaatctcccccaaagcggtctctgtcaatgacgcacgcatcagcgtaacgctccccccgacgacggtaaattctcttacgtccaccggcatgactcaaattgaatcgaccctagtccgaaaacaatactgatctccaatcagcaggtcggaaacgccgg
gi|5 : attgagccaaaaaagaaagtacccactctatatatctatcattataaagaaaaggagtaaacattcggatttaattttttaattgaagtaaaaaacaatttattcttgaagtcctacgaaaatttgaaacagctgcaatatgtctttcatcgaatggaccggtatgacgtaactgtcgatttccgaagtaataacggttttgataaatctgcacttgtattcgggaaagtttaaaactcaattttatgggatttttctgcagtgaaaatgtgatgtgggttgcagtataagatttaatatctcattttcccgccatgttgctcaatgtacgttatgatccgccgtcgtatgctgtcgacgtaacgctgtacgtacggcgccggtaaatagtcccattcagccagtagggctgctgaaaggtcctgcgccgtgttgattgcatattttgttctaacannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnTCCTTTACCGTGTTGAT--TTCATAATTTGTTCTAACACGGCA-TCCTAACTGATCCTATATGTGATCGATGGGATTTAAGTCAGGACTATTCGCCGGCCAGTCTAAAATATTGACGTTATTATCCGCCAAAAAACGTCGAGTAA-GTGCAGCTGTATGGGGACGGGCGTTATCATGCATAAGTGTGACGTTCGGTCCGTGGCGATGAATAAAAGGAACAACTTCTGGTTCAAGAACATTATTGACGTAGGTCTGTGCATTGATGTTTCCTCCAATAACGATTAGGCGGGTCTTGTGTA-CATCCATAATGCCA-CCCCAGACTA--TTACTGAACCTCCCCCAAAGCGGTCTCTCTCAATGACGCACGCATCAGCGTAACGCTC---CCCC---------------C-GACGACGGTATATTC----TCTCACGTCCATCGGCATGACTCAAAT-TGAATCGAGACTCGTCCGAAAACAATAC-T-GATCTCCAATCAGCACGTCGGAAACGCC--TGACGTCTG-----GT------------------TAAAATTTGGCCAAAGT------ACAGTCT-G-T--------ACGGACGAATCTGGTC-ATCATTTTGTCGCAATTGGTTCCGAACTGTCTGTGCACTGATTCCATGCTGTCGC---C---CTGTTGCTGATGCCGACAG---ACGTCGGTTACGTAAGTGTTGAACCGTGATGTACCGATCATCGACCGCAGTCGTCACACATGACCGACCGCTTCGGGGACGGTCCCAAACGTTTCCCCTGATCTGGAAACGTCTTCGCAAACGCTCAATTGTCTTCCTCGTGCAGCCGAACAGCCGGGATACTTCGGCTACTGTAGAGCCAGAATTCAGCATCCCGATCGCCTGATTTCTTTGGTCGTTATTTAGTCTTGACATTGCAATTTGATTTGATTTTATGTGATCTTTTTGTATTGT
gi|6 : ACCTGATGAGTCCTCCATTCTAATTAATGCATG-CACGCATTCTTCGTCTCATACTCCTAACGTAAGGTCTG-ATGTAAGCTGGTGCC----AATGTATTCCACTCACGCTG-AAGAGCTGCAGCTAGGT--TG-ACTGTGTTGATGTTGCC--ATTTTTTCGAACACAATGGTCCTAATTCGTTCCAATTATGTTCAATGGGAGACGAGTCTGGACTGTTGGCTGGCCAGTTCAACAGATTAACGTTGTTCTGCGCAAGAAAATGACGAGTAACGT-TAGCCGTAT--GAAC--------TCTTAC----GTCTGCAGCT-AGCCCATGTTGTTGTATAAATGGTAGTGCCTCTGGAACAAGGATCTGGTTGATATACGCCTGTACAGTCACGTTGCCATTGACTGTAGTTAGTCGTTGCCCGT-TACCGTCCATTATACCT-CACCATACAAGCACACT--ACCACCACCAAAATGATCTCTTTCCAAAATGCAAGCATCCGCGAATTG-TC---CCCT---------------T-TACGTCTGTATACCCGT--TCCCAC--CCATCAGCGTGGCTATGAT-TTAAC-----TTCATCAGTAAAGAGAACAT-GAT-TCCAGTCTGCTCTTTTAAAATGCAAGTGGCGTCTGCACCAATTAACTTGTGC-ATCTCGATGACGTTGAGTAAGGATCTGCCCAAAATAT-G-GAAGATTG-GCG--CGAAT-GGGTCTGGCATTGAATCTCAGTCTCTTCCTCATGGTTTGTCCGGAAATACCATAT---CTT---CTAGCTGTTACTGTCGCTGGGAGAAAATGTCG---ACGTAGGTGTatagc
gi|7 : taggACGTGGCCGACCGCTTTGAGGACGGTCCCAAACGTTTCCCCTGGTCTGGAAACGTCTTCGCTAACGCTCAATTGTCTTCCTCGTGCAGCCACACAGCCGGAATACTTCGGCTACTGTAGAGCCAGCATTCAGTATCCCGATCGCCTGATTTTTTTGGTCGTTATTTAGTCTTGGTATTGCAGTTTGACTTGATTTTATGTGATATTTTTGTATTGTGTCTAATTTCTGGTCAACAAGTGCAGTCAGATACCACCACCGGATATCGACCGTCGCTGCACGGAGCGCACATG--CAAAA--CAAGTTAATCGGGCCTCTCGGCTAAGCGCTTGACTGATAATTGATAAAACCAAAATTGACAGGTACTCCAACGAATACATTCACATTATTTATAGCTTATTTTGACAAATTATTAATATTGAAGAAATAATTCAAAAAAATA-AAAGTGGGTACTTTC-TTTTTTGGCTCAGTGTACATA
gi|8 : AAAAAAAAACTATCCACTCTATAT--ATCTATCATTATAAAGAAAAGGAGTATACATTCGGATTTAATTTTTTAACTGAAGTAAAGAACAATTTATTCTTAAAGT-----------TTGAAGCAGCTGCAATATGTCTTTCATCGAAAAAAA--TGGACCGATATGACGTAGGGGTCGATTTCCGAAGTAACAACGGTTTTGATGAATCTGCACTTGTAAGCGGGAAAGTTTAAAA--CTCAATTTT-ATGGGATTTTTTTGAAGTGAATATGTG-ATGTGGGTTGCAGTAAAAGATTTAATATCTCATGTGTCCGCCGTGTTGCCCAATGCACGTCATG-ATCCGCCGTCGCATACTGTCGACGTAACG-CTGTACGTA---CGGCACCGGTAAAT-TGTCCCATTCAGCCTG-TAGGGCTGCTGAAAGGTCCTGcat
gi|9 : actgagtTCAGTACTATTCTTTGGCCAGTCATAAACATTGACGTTATTATCCG---AGAAACGTCGAGTAA-GTGCAGCTGTATGGGGACGGGCGTTATCATGCATAAGTGTGACGTTCGGTCCGTGGCGCTGAATAAAAGAAACCACTTCTGGTTCAAGAACATTTCTGACGTAGGTCTAGGCATTGATGTTTCCTTCAATAACGATTAGGCGGGTCTTGTTTA-CATCCATAATTCCA-CCCCAGACTA--ATACTGCAC
gi|9 : CTC---CCCC---------------CTGACGATGGTAAATTC-T---CTTACGTCCGTC-GCATGACTCAAAT-TGAATCGATACTCGTCCGAAAACAATAC-T-CATCTCCAATCAGCACGTCGGAAACgcacgcatcagcgtaacaccgaccccccccccccccccccccccccctcccccctgacgatggtaaattctcttacgtccgtcgcatgactcaaattgaatcgatactcgtccgaaaacaatactcatctccaatcagcacgtcggaaac
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|13 ): CTGCATTAAGGTTGCCCGGCTTGTCCATTATGCCCGCCCAAACCATGACGCTACCACCTTCAAACCTGTCTCGTTCCTGCAAGCAGCATTGGGCAAATCTCTCGTTCCGTCGCCTGTAAACTCTGACCCTACCGTCAGCAAAGCTGACCATGAAGCGTGACTCATCGGTAAAA
Unaligned ( gi|16 ): CTGTCTCGTTCCTGCACGCAGCATTGGGCAAATCTCTCGTTCCGTCGCCTGTAAACTCTGACCCTATCATCAGCAAAGCTGACCATGAAGCGTGACTCATCGGTAAAAATCACGTT
Unaligned ( gi|18 ): AATTGTTCCCCTTTACGTCTATATACCCGTTCCCGCCTGTCAGCGTGGCTAAGGTTAAACTTTGATTCATCAGCAGAGAGAACGTGATTCCAGTCTGCTCTTCTTAA