lowQualScore : 11111111
lowQualScore : 2 22222 1 1 111111 222 222 1 33 11111111 1 1 00000000 111 2222222222222222222222 1 1 11111111111 1 111 222 111 111111111 9999999999999999999999999999999999999999999999999 11 1 333 11 2 1
lowQualScore : 6 6 4 6 0 0 55 3 0 3 5 44444 4 66 6 4 5 4 4 4 444444 444 777 444 4 8 6 44 33 44 4 3 3 0 33333333 7 4 7 6 11111111 7777 999 0 3 77 3 44 7777777777777777777777 8 55 4 44 5 44 6 1 22222222222 2 77 2 6 777 000 2 111 2 4 222222222 1 6 9 55 3 4 9999999999999999999999999999999999999999999999999 9 66 33 99 6 0 444 33 1 9 0 0 0
lowQualScore : . . . . . . .. . . . . ..... . .. . . . . . . ...... ... ... ... . . . .. .. .. . . . . ........ . . . . ........ .... ... . . .. . .. ...................... . .. . .. . .. . . ........... . .. . . ... ... . ... . . ......... . . . .. . . ................................................. . .. .. .. . . ... .. . . . . .
lowQualScore : 0 7 4 0 7 3 00 3 8 6 1 22222 0 11 0 1 0 0 5 0 000000 111 000 111 5 9 8 22 88 22 3 6 6 8 22222222 3 6 5 8 33333333 1111 999 4 1 33 2 22 3333333333333333333333 5 44 8 22 7 22 7 1 99999999999 7 33 7 8 777 888 7 444 9 2 333333333 5 7 1 55 0 4 2222222222222222222222222222222222222222222222222 2 99 88 88 4 2 222 88 2 0 0 2 2
consensus : TTTGGCAAGCATAGGTTTTTC-TTCTACACATTTACTCTGAACTCAAGTAACCATCTAAACGATTTGTGT--TAAAACAAATTAAGCACGTATTTGATGTACCTAAAATATGTACAAACTTACTACTTCTAGCATGATGCTTGAGTATATTCTA-CTGTCGCCCAGTGTTTGGTCGTTTTTT-A-AAG-TTTTTTT--CCTTGTCGTTAAATCTTTATCGTTTCGGGTAATT-TTACGCGAAAAAGTTTGTTATGGCGGCACCATCAACGCGAGCAAAAA-TTNAA---AAAAAAAAGCTGAATAGCTTTTTTTTTACATGTAGATCATCATCTGCAGAAAGTCAAACGCAGAAGAAAATGTATGTATATTTGCA--TGTCATGACATGTG--TAAATGATTTTAAATGGACCAGTCTGCTAAAA-CATGTATACAATTA-AAATATCTACACTGCGTAGACCAAACCT--------TCAAAAGCACCGAGACAGAAANAACCAAACTGGTGGACAAACTGAGGCAAACAAATAATCAATACAACACTGAAATCTATGTT----TTTCATCTATTTTCATTCAATGTTA----TATT-AAAAAAAAAAGATTTAGCCAG-AAAAA--CAATATGCCATCGGCCTGCTCCTAACAAGATAGTGATGTGCTATGATT--GTGT----C-TA-A-NA--C--NA-NTCCNA-AGTGGTGCTGTAGCGTAATAGG--TAAGGCGTGCGC--CTGTCAATCTAGAGGTCTAACGTTCGAGCCTGCCTAGCGACA--T--------TTTT-T--TT-TGTAAATAAAAATGTTTATAA-AA-AAN--TCAAG-GTATNCGTG---------TTATTATGTTTATCTTTATTTAAAAGAATTAAGTTATAAA--TGTATATACATTCACTTAAGT-AT-AT---TTGCCGCC--N----CA----C-CC---------C--------CCCACCC--C--TAACATC-AATTCCTGGATCCGCACCTGCG-CGCCC--CCTCTAAACTGAAATCCTGG-ATCCGCCCCT
Reference ( gi|1 ) : TTTGGTAAGCATAGGTTTT-C-TTCTACACATTCACCCTGAACTCAAGTAACCATCTAAACGATTTGTGT--TAAAACAAATTAAGCACATATTTGATGTACCTAAAATATGTACAAACTTACTACTTCTAGCATGATGCTTGAGTATATTCTA-CTGTCGCCCAGTGTTTGGTCGTTTTTT-A-AAG-TTTTTTT--CCTTGTCGTTAGATCTATATCGTTTCTGGTAATT-TTACGCAAAAAAGTTTGTTATGGCGGCACCATCAACGCGAGCAAAAA-TTAAA---AAAAAAAAGCTGAATAGCTTTTTTTTTACATATAGATCTTCATCTGCAGAAAATCAAACGCAGAAGAAAATGTATGTATATTTGCA--TGTCATGAC--GTG--TAAATGATTTTAAATAGACCAGTCTGCTAAAA-CATGTATACAATTA-AAATATCTACACTGCGTAGACCAAACTT--------TCAAAAGCACCGATACAGAAACAACCAAACTGGTAGACAAACTGAGGCAAACAAATAATCAATACATCACTGAAATCTATGTTAAACTTTCATCTATTTTCATTCAATGTTA----TATT-AAAAAAAAAAGATTTAGCCAG-AAAAA--CAATATGCCATCGGCCTGCTCCTAACAAGATAGTGATGTGCTATGATT--GTGT----C-TA-A-TG--C--AA-ATCTAA-AGTGGTGCAGTAGCGTAATAGG--TAAAGCGTGCGC--CTGTCAATCTAGAGGTTTAACGTTCGAGCCTCCCTAGCGACA--T--------TTTT-T--TT-TGTTAATAAATACGTTTATAACAA-AAA--TCAAG-GTATACGTG---------TTATTATGTTTACCTTTATTCAAAAGAATTAAGTTATAAA--TATATATACATTCACTTAAGT-ATAAT---TTGACGCC--A----CA----TACC---------C--------CCCAACC--C--TAACATT-AATTCCTGGATCTGCACATGCGCCCCCC--CCTCTAAACTGAAATACTTG-ATCCGCCCCT
gi|3 : TTTGGCAAGCATAGGTTTTTC-TTCTACACATTTACTCTGAACTCAAGTAACCATCTAAACCATTTGTGT--CAAA-CAAATTAAGCACATATTTAATGTACCTAAACTATGTACAAACGTACTACTTCTAGCATGATGCTTGAGTATATTCT----GTCGCCCAGTGTTT---------TT-A-A-G-TTTTTTT--TCTTGTCGTTAAATCTTTATCGTTTCGGGTAATT-TTACGCGAAAAAGTTTGCTATGGCGGCACCATCAACGCGAGCAAAAA-TTAAA---AAAA------------GCTT--------CATGTAGAACATCATTTGCAGAAAGTCAAACGCAGAAGAAAATGTATGTATATTTGCA--TGTCATGACATGTG--TAAATGATTTTAAATGGACCAGTCTGCTAAAA-CATGTATAATATTA-AAATATCTACACTGCGTAGACCAAACTT--------TCAAAAGCACCG--------------AGACTGGTGGACAAACTGAGGCAAATAAATAATCAATACAACACTGAAATCTATG------TTTCATCTATTTTCATTCAATGTTATCAGTATT-TAAAAAAAAA----TAGCCAG-AAAAA--CAATATGCCATCTGCCAGCTCCTAACAAGATAATGATGTGCTATGATT--GTGT----C-TA-A-GA--C--TA-ATTCAA-AGTGGTGCTGTAGCGTAATAGG--CAATGCGTGTGCGGTCGTCAATCTATAGGTCTAACGTTCAAGCCTGCCTAGCAACA--T--------TTTT-T--TT-TGTAAATAAAAATGTTTATAA-AA-AAT--TCAAG-GTATGCGTG---------TTATTATGTTTATCTTTATTTAAAAGAATTAAGTTATAAA--TGTATATACATTCACTTAAGT-AT-AT---TTGCCGCC--A----CA--------------------------CCCACCC--C--TAACATC-AATTTCTGGATCCGCAC
gi|2 : tcaagggcggattcagggtgccccaacatcccctaaaaTTTGGCAAGCATAAGTTTT-CCTTCTACACATTTACTCTGAACTCAAGTAACCACATAAACGATTTGTGT--TAAAACAAAATAAGCACGTATTTAATGTTCCTAAAACATGTATCAACTTACTACTTCTAGCATGATGCTTGAGTATATTCTACCTGTCGCCCAGTGTTTGGT-ATTTTTT-ATAAGTTTTTTTT--CCTTGTCGTTAAATCTTTATCGTTTCGGGTTATT-TTACGCGAAAAAGTTTGTGATGGC-GTGCCG-CA--GCGAGCAAAAA-TT--A---AAAAATAAGTTGAATAGC---TTTTTTACAAGTAGATCATCATCTGCAGAAAGTCAAACGCAGAAGAAAATGTA-GTATATTTGCA--TGTCATGACATGTG--TAAATAATTTTAGATGGACCAGTCTGCTAAAA-CATGTATACAATTA-AGATATCTACACTATGT---------------------AAAAGCACCGAGACAGGAAGAACCAAACTGGTGGACAAATTGACGCAAACAAATAATCAATACAACACTGAAATCTACG--A----TTCATCTATTTCCATTCAATGTTA----TATT----AAATAAAGATTTAGCCAGAAAAAA--CAATATGCCATCGGCCTGCCCCTAACATGAGAGTGATGTGCTATGATT--GTGTGAA-T-AA-A-TGTTC--AA-TTCT-A-AGTGGTACTTTAGCGTAATAGG--TAAGGCGTGCGC--CTGTTAATCTAGAGGTCTATCGTTCGAGCCTGCCTAGCGGCA------------TTT-T--TT-TGTAAATAAA-ACATTTATAA-AA-AAA---CAAG-GTATTCGTG---------TTATTATTTGTATCTTTATTTAAAAGAATTAAGTTATAAA--TATATATACACTCACTAAAAT-AT-AT-------CCCC--C----CA-----------------C--------CACACCC--C--TAACATC-CATTCCTGGATTCGCAC
gi|8 : tagaatattgccatcaaggacgtattcaggcgggcgggcacccgcacccccccccccccccctccctctaaaaTTTGGCAAGCATAGGTTTTTC-TTCTACACATTTACCCTGAACTCAAGTAACCATCTGAAAGAGTTGTGT--TAAAACAAATTAAGCACGTATTTGATGTACCTTAAATATGTACAAACT-GCTACTTCTATCATGATGCTTGAGTATATTCTA-ATGTCGCCCAGTGTTTGGTCGTTTTTT-A-A-G-TTTTTTT--CCTTGTCGTTAAATCTTAATCGTTTCGGGTAATT-TT-CACGAAAAAGTTTGTTATGGCGGCACCATCAACACGAGCAAAAA-TTGAA---AAAAA---GCTGAATAGCTTTTTTT--ACATATAGATCATCATCTGCAGAAAGTCAAACGCAGAAGAAAATGTATGTATATTTGCA--TGTCATGAC--ATG--TG--TGATTTAAAATTGACCAGTCTGCTAAAA-CATGTATACAATTA-AAATATCCACACTGCGCAGACCAAACCT--------TCAAAAGCACAGAGACAGAAACAACCAAACTGGTGGACAAACTGAGGCAAACAAATAATCAATACAACACTGAAATCTATG------TTTCATCTATTTTCATTCAATGTTA----TATT----AAAAAAAGATTTAGCCAG-AAAAA--CAATATGCCATCAGCCTGCTCCTAACAAGATAGTGATGTGCTATGATT--GTGT----C-TA-A-GA--C--TA-ATTCTA-AGTGGTACct
gi|11 : ggcgcaccccccccccccttaaaaTTTGGCAAGCATAGGTTTTTC-TTCTACACATTTACTCTGAACTCAAGTAACCATCTAAACGATTTGTGT--TAAAACAAATTAAGCACGTATTTAATGTACCTAAAACATGTATAAATTTCCTACTTATAGCATGATGCTTGAGTATATTCTA-CTGTCGCCCGGTGTTTGGTCTTTTTTT-T-CAG-GTTTTTT--CCTTGTCGTTAAATCTTTATCGTTTCGGGTAATT-TTACGCAAAAAAGTTTGTGATGGCGGCACCATCAAAGCGAGCAAAAT-TT--A---AAAAAAAAGTTGAGTAGC---TTTTTTACAAGTAGATCATCATCTGCAGAAAGACAAACGCAGAAGAAAATGTATGTATATTTGCA--TGTCATGACATGTG--TGAATGATTTTAAATGGACCAGTCCGCTAAAA-CATGTATACAATTA-AAATATCTACACTGCGT---------------------AAAAGCACCGAGACAAAAAGAACCAAAATGG-GGACAAACCAAGt
gi|6 : aaaaTTTGGCAAGCATAAGTTTTTC-TTCTACACATTTACTCTGAACTAAAGTTACTATCAAAACGAATTGTGT--TGAAACACATTAAGCACGTATTTAAAGTACCTAAAATATGTATAAACTTACTACTTCTAGCATGATGCTTCAGTATATTCTA-CTGTAGCCCAGTGTTTGGTCCTTTTTT---AAG-TTTT
gi|18 : taagatgaacgtgttcttgagtttctaatcagtactgtactgctattgcgcttcattgtattttttctagactatagataaaacttaaaggcggattcaggggttaccccatcccccaaacaTTGGCAAGCATAGGTTTTTC-TTCTACACATATACTCTGAACTCAAGTTACCATTTAAACGAATTGTGT--TAAAACAAATTAAGCACATACTTAAAGTAaccaccaaatcgagcaataattgaaaaaaagctgaatagcttttttacaagtagatcgtcatctgcagaaagtcaaacgcagaggaaaatgtatgtatatttgcatgtcatgacatgtgtaaatgattttaaatggaccagtctgctaaaacatgtatacaattaaaatatctacactgcgtatgccaaaccttcaaaagcaccgagacaaaaagaatcaaactggtggagaaactgaggcaaacaaataatcagtacaacactgaaatctatgttttatctattttcattcaatgttatattaaaaaagatttagccagtaaaacaatatgccattagcctgctcctaacaagagagtgatgtg
gi|17 : tgttgagtttctaatcagtactgtactgctcttgcgcttatggtatttaatttatagactatagatataaagcaagagcagattcaggtgggaacccccacaccccgcacccccaccccccaaaaatattaaaaataaaaataaaaaaTTGGCAAACATAGGTTTT-T-TTCTACACATTTACTCTAAACTCAAGTTACCATCTAAACGAATTATGTTATAAAACAAATTAAGCACGTATTTAAAGTACC
gi|12 : ttgttgagtttctaatcagtactgttctgctcttgcgcttatggtattttatttatagactatagatataaagcaagggcagattcaggggggtacccccccccaaaaaaaaaaataaataataataataaataaataaaaaaaataaaaaaGGCAAGCATAGGTTTTTC-TTCTACACATTTACCCTGAACTCGAGTAACCATCTAAACGATATGTGT--TAAAACAAATTAAGCACGTATTTGATGTACCTAAAATATGTACAAACTTACTACTTCTAGCATGATGCTTGAG----------------CCCAGTGTTTGGTCGTTTTTTTA-AGG-TTTTTTT--CCTTGTCGTTAAATCTTTATCGTTTCGGGTAATT-TTACGCGAAAAAGTTTGTAATGGCGGCACCATCAACGCGATCAAAAT-TT--------AACAAAGCTGAATAGC---TTTTTTACATGAAGA---TCATCTGCAGAAAGTCAAACGCAGAAGAAAATGTATGTATATTTGCA--TGTCATGAC--GTG--TAAATGATTTTAAATA
gi|26 : GCATGGTTTTT-C-TTCTACACATTTACCCTGAACTCAAGTtctacactacgtagaccaaactttcaaaagcaccgagacagaaacaaccaaaccggtggacaaactgaagcaaacaaa
gi|5 : ACTCAAGTAAGCATCTTAACGATTTGTGT--TAAAACAAATTAAGCACGTATTTGATGTACCTAAAATATGTACAAACTTATTACTCC-----------------------TA-CTGTCGCCAAGTGTTTGGTCGATTTTT----------TTCC--CCTTATCGTTAAATCTTTATCGTTTCGGGTAATT-TTACGCGAAAAAGTTTGTTATAGCGGCACTATCAACACGAACAAAAAGTCAAACGCAGAAGAAA
gi|4 : AACGATTTGTGT--TAAAACAAATTAAGCACGTATTTGATGTACCTAAAGTATGTACAAACATACTACTTCTAGCATGATGCTTGAGTATATTCTA-CTGTCTTTCAGTGTTTGGTCGTTTTTT-A-AAG-TTTTTTTTTCCTTGTCGTTAAATCTTTACCGTTTCGGGTAATT-TTACGCGAAAAAGTTTGTTATGGTGGCACCATCAACGCGAGCAAAAA-TTTGA---AAAAAA--GCTGAATAACTTTTTTT--ACATGTATATCATCATCTGCAGAAAGTCAAACGCAGAAGAAAATGTATGTATATTTGTA--TGTCATGACATGTG--TAAATGATTTTAAATGGACCAGTCTGCTAAAA-CATGTATACAATTA-AAATATCTACACGGAGTAGACCAAACTT--------TCAATAGCACCGAGACAGAAAGAATCAAA------GACAAACTGAGGCTTACACATTATCAATACAACATTGAAATCTATATT------TCATCTATTTTCATTCAATGTTA----TATT-AAAA--AAAAGATTTAGTCAG-AAAAA--CAATATGCCATCGGCCTGCTCCTAACAAGAAAGTGACGTGCTATGATT--GTGT----C-TA-A-GA--C--TA-ATTCTA-AGTGGTGCTGTAGTGTAACAGG--TATGACGTGCAC--CTGTCAATCTAGAGGTCTAACGTTCGAGTCTGCCTAGCGACA--T--------TTTT-T--TT-TATAAATAAAAATGTTTAT--CGATAAAT-TCAAG-GTATACCTA---------TTATAATGTTTATCTTTATTTAAAAGAATTAAGTTATAAA--TGTTTTTACATTCACTTAAGT-AT-AT---TTGCAGCC--C----CC----CCCCCCCCCCCCAC--------CCCAACC--CTTTTACTTC-AATTCCTGTATCCGCATCTGCG-CACCC--CTTCTAAACTGAAAT-CGTGCATCCGCTCCTatgtatgtatatttgcatatcatgatatgtgtaaatgattttaaatggatcagtctgctaaaacatgtatacaattaaaatatctacactgcgtagaccaaaccttcaaaagcatcaagaccaaactggtggacaaactgaggcaaacaattaatgaatacaacactgaaatctatgtttcatctatttacattcaatgctatatttaaaaaaaaaagatttagcaagaaaaaacaatatgccatcggcctgctcctaacaagatactgatggcctatgattgtgtctaagactaattcttagtggtgctgtagcgtaatatgttaggcgtgcgcctgtcaatctagacgtctgacgttcgagactgcctaacgacattatttttattttttttgaaataaaaaaaattatacaaaaattcaagttatacgtgttattacgtttattatgtttatttttatttgaaagaattaagttataaatgtatttacattcacttaagtatatttgtcgcccccatccctaacatcagttcctggatctgcgcctgcgcgccccctctaatctgaaatcctggatccacacct
gi|21 : CGATTTGTGT--TAAAACAAATTAAGCACGTTTTTGATGTACCTAAA-TATGTTCAAACTTACTACTTCTAGCATGATGCTTGAGTATATTCTA-CTTACGCCCAACGTTTGGTCTTTTTTT-A-
gi|9 : tctatACTTCTAGCATGATGCTTGAGTATATTCTA-CTGTCGCCCAGTGTTTGGTC-TTTTTT-A-A-G-TTTTTTT--CCTTGTCGTTAAATCGTTATC-TTTCGGGTAATT-TTACGCGTAAAAGATTGTTGTGGCGGCACCATCAACGCGAGCAAAAT-TTTAA---AAAAAA--TCTGAATAGCTTTTTTATTACATGTAGATCATCATCTGCAGAAAGTCAAACGCAGAAGAAAATGTATGTATATTTGCA--TGTCATGACATGTG--CAAATAATTTTAAATGGACCAGTCTGCTAAAAACATGTATACAATTA-AAATATCAACACTGCATAGACCAAACCT--------TCAAAAGCACCGAGACAGAAACAACCAAACTGGTGGATAAACTGAGGCAAACAAATAATAAATACAGCAATGAAATCTATG------TTTCATTTATTTTCATTCAATGTTA----TATT---AAAAAAAATGTTTAGCCAG-AAAAA--CAATATGCCATCGGCCTGCTCCTAACAAGATAGTCATGTGCAATGATT--GTGT----C-TACG-TC--T--AA-TTCTAAGAGTGGTGCTGTAGCGTAATAGG--TAAGGCGTGTGC--CTG-----CT---------------GAGCC---------ACAT-T--------TTTT-T--TT-TGTAAATAAAAATGTTTATAAAAC-AAT--TCAAT-GGATACA------------TATTATGTTTATCTTTATTTAAAAGAATTAAGTTATAAA--TGTATATttatcgttaaacc
gi|10 : GCATGATGTTTGAGTATATTATA-TTGTCGCCCAGTGTTTGGTCGTTTTTT-------------T--CTTTGTTGTTAAATCTATATCGT-------AATT-TTACGCGAAACAGTTTGTTATGGCGGCACCATCAACGCGAGTAAAAA-TTAAA---AAAAACA-GCTGAATAGCTTTTTT---ACATGTAGATC---ATCTGCAGAA--------------GAAAATCTATGTATATGGG-A--TGTCATGACATGTG--TAAATTATTTTAAATAGGCCAGTCTGCTAAAA-CATGTATACAATTA-AAATATCTACACTGCCTAGACCAAACTT--------TCAAAAGCACCGAGACAGAAACAACCAAACTGGTTGACAAACTGAGGTAAACAAAAAATCAATACAACACTGAAATCTATG---------------TTTTCATTCAATGTTA----TATT--AAAAAAAAAGATTCAGCTAG--AAAA--CAATATGCCATCGGCCTGCTCCTAACAAGA---------------------TGT----T-TA-A-TA--C--AA-TTTTAA-A-TGGTGCAGTAGCGTAATAGG--TAAGGCGTGCGA--CTGTCAATCTAAAGGTCTAACGTTCGAGCCTTCCTAGCGATA--T--------TTTT-T--TTGTGTAAATAAAAATGTTTATAAAAG-AAAATTCAAG-GTAT
gi|7 : ATTATTACGCGAAAAAATTTGTTATGGCGGC
gi|6 : ACCACCAAATCGAGCAATAA-TTGAA---AAAAA---GCTGAATAGCTTTTTT---ACAAGTAGATCGTCATCTGCAGAAAGTCAAACGCAGAGGAAAATGTATGTATATTTGCA--TGTCATGACATGTG--TAAATGATTTTAAATGGACCAGTCTGCTAAAA-CATGTATACAATTA-AAATATCTACACTGCGTATGCCAAACCT--------TCAAAAGCACCGAGACAAAAAGAATCAAACTGGTGGAGAAACTGAGGCAAACAAATAATCAGTACAACACTGAAATCTATG------TTTTATCTATTTTCATTCAATGTTA----TATT-----AAAAAAGATTTAGCCAG-TAAAA--CAATATGCCATTAGCCTGCTCCTAACAAGAGAGTGATGTGtttgaatagctttttttacatgtagatcatcttctgcagaaagtcaaacgcagaagaaaatgtatgtatatttgcatgtcatgatatgagtaaataattttaaatggaccagtctgctaaaacatgtatacaattaaaatatccacactgcgtagaccaaacttccaaactttcaaaagcaccgagacagaaacaaccaaactggtggacaaactgaggcaaacaaataatcaatacaacactgaaatctatatttcatctattttcattcagccagaaaaacaatatgccatcggcctgctcctaacaagatagtgctgtgctatgattgtgtttaagactaattctaagtggtgctgaagcgtaataggtaaggcgtgcgcctgtcaatctagaggtctaatgttcgagcctgcctagcgccatttttttttttgtaaataataatgtttataaaaaaattcaaggtatacgtgttattatgtttatctttatttcaaaaaattaagttataaatgtatatatacattcacttaagtatatttgccgccgcacccccgcccctctcccaacccccctatcagttcctggatctgcacctgcatgccccctctaaactgaaatcctgggtcctcccctc
gi|7 : taagatgaacgtgttcttgagtttctaatcagtactgtactgctattgcgcttcattgtattttttctagactatagataaaacttaaaggcggattcaggggttaccccatcccccaaacatttggcaagcataagtttttcttctacacatttactctgaactaaagttactatcaaaacgaattgtgttgaaacacattaagcacgtatttaaagtacctaaaatatgtataaacttactacttctagcatgatgcttcagtatattctactgtagcccagtgtttggtccttttttaagttttTGAATAGCTTTTTTT--ACATGTAGATCATCTTCTGCAGAAAGTCAAACGCAGAAGAAAATGTATGTATATTTGCA--TGTCATGAT--ATGAGTAAATAATTTTAAATGGACCAGTCTGCTAAAA-CATGTATACAATTA-AAATATCCACACTGCGTAGACCAAACTTCCAAACTTTCAAAAGCACCGAGACAGAAACAACCAAACTGGTGGACAAACTGAGGCAAACAAATAATCAATACAACACTGAAATCTATATT------TCATCTATTTTC-------------------------------ATTCAGCCAG-AAAAA--CAATATGCCATCGGCCTGCTCCTAACAAGATAGTGCTGTGCTATGATT--GTGT----T-TA-A-GA--C--TA-ATTCTA-AGTGGTGCTGAAGCGTAATAGG--TAAGGCGTGCGC--CTGTCAATCTAGAGGTCTAATGTTCGAGCCTGCCTAGCGCCATTT--------TTTT-T--TT-TGTAAATAATAATGTTTATAAAAA-AAT--TCAAG-GTATACGTG---------TTATTATGTTTATCTTTATTTCAAAAAATTAAGTTATAAATGTATATATACATTCACTTAAGT-AT-AT---TTGCCGCC--G----CA----CCCC---------CGCCCCTCTCCCAACC--C--CCCTATC-AGTTCCTGGATCTGCACCTGCA-TGCCC--CCTCTAAACTGAAATCCTGG-GTCCTCCCCT
gi|5 : attattacgcgaaaaaatttgttatggcggcttCAAAAAGTCAAACGCAGAAGAAAATGTATGTATATTTGCA--TATCATGATATGTG--TAAATGATTTTAAATGGATCAGTCTGCTAAAA-CATGTATACAATTA-AAATATCTACACTGCGTAGACCAAACCT--------TCAAAAGCATCAA---------GACCAAACTGGTGGACAAACTGAGGCAAACAATTAATGAATACAACACTGAAATCTATGTT------TCATCTATTTACATTCAATGCTA----TATTTAAAAAAAAAAGATTTAGCAAG-AAAAAA-CAATATGCCATCGGCCTGCTCCTAACAAGATACTGATGGCCTATGATT--GTGT----C-TA-A-GA--C--TA-ATTCTT-AGTGGTGCTGTAGCGTAATATG--TTAGGCGTGCGC--CTGTCAATCTAGACGTCTGACGTTCGAGACTGCCTAACGACA--TTATTTTTATTTT-T--TT-TG-AAATAAAAAAAATTAT-ACAA-AAAT-TCAAG-TTATACGTGTTATTACGTTTATTATGTTTATTTTTATTTGAAAGAATTAAGTTATAAA--TGTATTTACATTCACTTAAGT-AT-AT---TTGTCG------------------C---------C--------CCCATCC--C--TAACATC-AGTTCCTGGATCTGCGCCTGCG-CGCCC--CCTCTAATCTGAAATCCTGG-ATCCACACCTc
gi|9 : actcaagtaagcatcttaacgatttgtgttaaaacaaattaagcacgtatttgatgtacctaaaatatgtacaaacttattactcctactgtcgccaagtgtttggtcgatttttttccccttatcgttaaatctttatcgtttcgggtaattttacgcgaaaaagtttgttatagcggcactatcaacacgaaTATTTGCACATGTCATGAC--ATG--CAAAT
gi|12 : acttctagcatgatgcttgagtatattctactgtcgcccagtgtttggtcttttttaagtttttttccttgtcgttaaatcgttatctttcgggtaattttacgcgtaaaagattgttgtggcggcaccatcaacgcgagcaaaattttaaaaaaaatctgaatagcttttttattacatgtagatcatcatctgcagaaagtcaaacgcagaagaaaatgtatgtatATTTACA--CGTCATGAC--ATG--CAAATattttaaatggaccagtctgctaaaaacatgtatacaattaaaatatcaacactgcatagaccaaaccttcaaaagcaccgagacagaaacaaccaaactggtggataaactgaggcaaacaaataataaatacagcaatgaaatctatgtttcatttattttcattcaatgttatattaaaaaaaatgtttagccagaaaaacaatatgccatcggcctgctcctaacaagatagtcatgtgcaatgattgtgtctacgtctaattctaagagtggtgctgtagcgtaataggtaaggcgtgtgcctgctgagccacattttttttttgtaaataaaaatgtttataaaacaattcaatggatacatattatgtttatctttatttaaaagaattaagttataaatgtatat
gi|12 : ggcaagcataggtttttcttctacacatttaccctgaactcgagtaaccatctaaacgatatgtgttaaaacaaattaagcacgtatttgatgtacctaaaatatgtacaaacttactacttctagcatgatgcttgagcccagtgtttggtcgtttttttaaggtttttttccttgtcgttaaatctttatcgtttcgggtaattttacgcgaaaaagtttgtaatggcggcaccatcaacgcgatcaaaatttaacaaagctgaatagcttttttacatgaagatcatctgcagaaagtcaaacgcagaagaaaatgtatgtatA-CGTGTAAATGATTTTAAATATCTACACTACGTAGACCAAACTT--------TCAAAAGCACCGAGACAGAAACAACCAAACCGGTGGACAAACTGAAGCAAACAAAgattttaaatatctacactacgtagaccaaactttcaaaagcaccgagacagaaacaaccaaaccggtggacaaactgaagcaaacaaa
gi|13 : ggcaagcataggtttttcttctacacatttaccctgaactcgagtaaccatctaaacgatatgtgttaaaacaaattaagcacgtatttgatgtacctaaaatatgtacaaacttactacttctagcatgatgcttgagcccagtgtttggtcgtttttttaaggtttttttccttgtcgttaaatctttatcgtttcgggtaattttacgcgaaaaagtttgtaatggcggcaccatcaacgcgatcaaaatttaacaaagctgaatagcttttttacatgaagatcatctgcagaaagtcaaacgcagaagaaaatgtatgtatatttgcatgtcatgACAAAAAGAACCTAACTGGTGGACAAACTGAGGCAAACAAATAATCAATACCACACTGAAATCTATGTT------TTATCTATTTTCGTTCAATGTAA----TATT-AAAAAAA---GATTTAGCCAG-TAAAA--CAATATGCTATCAGCCTGCTCCTAACAAGAGAGTGATGTGCTATGATT--GTGA----A-TA-AATG--CTTAATGTCTAA--GTGGCGCTGTAGCGTAATAGG--TAAGGCGTGTGC--ATGTCAATCCAGAGGTCTAACGTTCGAGCCTGCCTAGCGACA--T--------TTTTCT--TT-TGAAAATAAAAATGTGTATAA-AA-AAG--TTAAATGTATTTGGG---------TAACTATTTTCATCTTTATTTTAAAGAATTAAGTTATAAA--TGTATATACATTCAATT--------CC---TTGAT-CC--G----CACCTGTGCT---------C--------CCCGCCC--CCTTAAC-TG-AAATCCTGGATCCG
gi|14 : agAAACTGGTGGACAAACTGAGGCAAACAAATAATCAATACAACACTGAAATCTTTGTT------TCATCTATTTTCATTCAAAGTTA----TATT-AAAAAAAAACGATTTAGCCAG-AAAAA--CAATATGCCATCGACCTGCTCCTAACAAGATAGTGATGTGCTATGATT--GTGT----CTTA-G-TC--T--AA-TTCT-A-AGTAGTGATGTAGTGTAATAGG--TAAAGCATACGC--CTGTCAATCTAAAGGTCTAACATTTGAGCCTGCCTAGCGGTAT-T--------TTTT-T--TT-TGTAAATAAAAATTTTTATAAAAA-AAT--TCAAG-GTTTACGTG---------TTATTATGTTTAGCTTTATT-AAAATAATTAAGTGATAAA--TGTATATA---TCACTTAAGT-AT-AT---TTGCTGCCCTACCCCCA----CCCC---------C--------CCCACCC--C--TAACATC-AATTCCTGGATC--CACAtc
gi|16 : TTTCATCTATTTTCATTCAATGTTA----TATT-AAAA-AAAAAGATTTAGCCAG-AAAAA--CAATATGCCATCGGCCTGCTCCTAACAAGATAGTGATGTGCTATGATT--TTGT----A-TA-A-AA--C--TA-ATTCTA-AGTGGTGCTGTAGCGTAATAGG--TAGGGTGTGTGC--CTGTCAATCTAGAGGTCTAACGTTCGAGCTTGCCTAACAACA--T--------TTGT-T--TT-TGTAAATAAAAATATTTAT--TAA-AAA--ac
gi|15 : aattaaagttacaaaaaaaataAAAAAAAGATTTAGCCAG-AAAAAAACAATATGCCATCGTCCTGCTCCTAACAAGAGAATGATGTGCTATGATT--GTGTGAA-T-AA-A-TG--CTCGT-GTCTAA--GTGGTAATTTAGCG-AATAGG--TAAGGCCTGCGC--CTGTCAATCTAGAGGTCTATCGTTCGAGCCTGCCTAGCGACA--T--------TTTT-T--TT-TGTAAATAAAAATGTTTATAAAAA-AAT--TCAAG-GTATTTGTG---------TTATTATTTTTATCTTTATTTAAAAGAATTAAGTTATAAA--TGTATATACATTCACTAAAAT-AT-AT---T---CCCC--C----C-------CC---------C--------CCC--CCTTC--TAACATC-CATTCCTGGAATCGCAC
gi|20 : tACAA-AT-GCGATGTGCTATAATTTAGTGTAAGAC-TA-A-T----------TCTAA--GTGGTGCTGTAGCGTAATAGG--TAAGGCCTGCGC--CTGTCAATCTAGAGGTCTAACGTTCGAACCTGCCTAGTGACA--T--------TTTT-T--TT-TGT-----------------------AA--TCAAG-GTATACATG---------TTATTATGTTTATCTTTATTTAAAAGAATTAc
gi|19 : AACAGGCTTAAGGCGTGCGC--GTGTTAATCTAGAGGCCTAACGTTCGAGGCTGCCTAGCGACA--T--------TTTT-T--TC-T-TTG-TAAATA----------AA-ACT--TCAAG-GTATTCGCG---------TTATCATTTTTATCTTTATTTAAAAGAATTAAGTTATAAA--TGCATATAGATTCAT---GGTAATAATACAGTGACGTC--AG---CG----TAC
gi|24 : gctgatgtgaCCTTAACGACA--T--------TTTT-TCTTT-TGTAAATAAAAATGTTTTTAA-AA-AAA--TCAAG-GTATTCGTA---------TTATTATTTTTATCATTA
gi|23 : ggtggggcgcaCCTTAACGACA--T--------TTTT-TCTTT-TGTAAATAAAAATGTTTTTAA-AA-AAA--TCAAG-GTATTCGTA---------TTATTATTTTTATCATTAa
gi|13 : aggtggggcgcaACATTCAATTCCTTGATCCGCACCTGTGCTCCCCGCCCCCTTAACTGAAATCCTGG-ATCCGTC
3 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|22 ): GTTCTTGAGTTTCTTATCAATACTGCTCTGCTCATGCGCTTTATGGTATTTTATTTCTAGACTATATATATAAAGCAAGGGTGGATTCAGGGGGGT
Unaligned ( gi|25 ): TTTAGAGGTTATTCAGATACCTAAACCCAGGCTTAACTAAA
Unaligned ( gi|27 ): ATGTATATACATTCAATTCCTGGACCCGCACC
Alignments
lowQualScore : 22222 1 111 111 11111111 333333333 11 111111 11111111111 11 111111111 333333333333333333 11111 1111111 111111 1
lowQualScore : 44 3 3 33333 3 55 3 5 666 666 555 555 3 555 555 888888 3 555 999999 3 555 44 3 44 2 22222222 3 000000000 6666 3 33 5 33 2 3 77777777 33 1 555555 1 33 33 33 11111111111 2 00 2 8888888 2 2 2 2 1 111111111 0 55 2 4 0 3 2 999999999999999999 11111 66 3333333 111111 4 0 0 0 0
lowQualScore : .. . . ..... . .. . . ... ... ... ... . ... ... ...... . ... ...... . ... .. . .. . ........ . ......... .... . .. . .. . . ........ .. . ...... . .. .. .. ........... . .. . ....... . . . . . ......... . .. . . . . . .................. ..... .. ....... ...... . . . . .
lowQualScore : 66 3 8 77777 3 00 6 2 444 444 333 666 1 444 444 888888 1 444 666666 3 888 22 1 22 2 11111111 2 000000000 5555 1 99 7 99 4 0 99999999 99 0 111111 0 99 99 99 66666666666 5 33 5 9999999 5 5 9 7 0 444444444 7 00 2 4 1 9 6 111111111111111111 11111 11 0000000 555555 0 0 2 2 2
consensus : TTTGGCAAGCATAGGTTTTTCTTCTACACATTTACTCTGAACTCAAGTAACCATCTAAACGATTTGTGT--TAAAACAAATTAAGCACGTATTTGATGTACCTAAAATATGTACAAACTTACTACTTCTAGCATGATGCTTGAGTATATTCTA-CTGTCGCCCAGTGTTTGGTCGTTTTTT-A-AAG-TTTTTTT--CCTTGTCGTTAAATCTTTATCGTTTCGGGTAATT-TTACGCGAAAAAGTTTGTTATGGCGGCACCATCAACGCGAGCAAAAATT-AAA---AAAAAAAGCTGAATAGCTTTTTTTTTACATGTAGATCATCATCTGCAGAAA-G---TCAAACG---CAG------AAGAAAATGTATGTATATTTGCATGTCATGACA-TGTGTAAATGA---TTTTAAATG------GACCAGTCTGCT-A---AAAC--ATGTATACAATTA-A--AATATCTACACTGCGTAGACCAAACTT--------TCAAAAGCACCGAGACAGAAACAACCAAACTGGTGGACAAACTGAGGCAAACAAATAATCAATACAACACTGAAATCTATGTT----TTTCATCTATTTTCATTCAATGTTA----TA-TTAAAAAAAAAAGATTTAGCCAG-AAAAA--CAATATGCCATCGGCCTGCTCCTAACAAGATAGTGATGTGCTATGATTGTGTCTAAG-A-----CT-AAT-T----CTA--AGTGGTGCTGTAGCGTAATAGG--TAAGGCGTGCGC--CTGTCAATCTAGAGGTCTAACGTTCGAGCCTGCCTAGCGACA--T--------TTTT-T--TT-TGTAAATAAAAATGTTTAT-A-A---A-A-AATTCAAG-GTATNCGTG---------TTATTATGTTTATCTTTATTTAAAAGAATTAAGTTATAAATG--TATATACATTCACTTAAGTAT-ATTTGCCGCCNCA-------C-----CC---CCCC-----ACCCC--TA-------AC------AT-CAATTCCTGGATCCGCACCTGCG-CGCCCCCTCTAAACTGAAATCCTGGATCCGCCCCT
Reference ( family-2158 ) : TTTGGCAAGCATAGGTTTTTCTTCTACACATTTACTCTGAACTCAAGTAACCATCTAAACGATTTGTGT--TAAAACAAATTAAGCACGTATTTGATGTACCTAAAATATGTACAAACTTACTACTTCTAGCATGATGCTTGAGTATATTCTA-CTGTCGCCCAGTGTTTGGTCGTTTTTT-A-AAG-TTTTTTT--CCTTGTCGTTAAATCTTTATCGTTTCGGGTAATT-TTACGCGAAAAAGTTTGTTATGGCGGCACCATCAACGCGAGCAAAAATTNAAA---AAAAAAAGCTGAATAGCTTTTTTTTTACATGTAGATCATCATCTGCAGAAA-G---TCAAACG---CAG------AAGAAAATGTATGTATATTTGCATGTCATGACA-TGTGTAAATGA---TTTTAAATG------GACCAGTCTGCT-A---AAAC--ATGTATACAATTA-A--AATATCTACACTGCGTAGACCAAACCT--------TCAAAAGCACCGAGACAGAAANAACCAAACTGGTGGACAAACTGAGGCAAACAAATAATCAATACAACACTGAAATCTATGTT----TTTCATCTATTTTCATTCAATGTTA----TA-TTAAAAAAAAAAGATTTAGCCAG-AAAAA--CAATATGCCATCGGCCTGCTCCTAACAAGATAGTGATGTGCTATGATTGTGTCTAAN-A-----CN-ANT-C----CNA--AGTGGTGCTGTAGCGTAATAGG--TAAGGCGTGCGC--CTGTCAATCTAGAGGTCTAACGTTCGAGCCTGCCTAGCGACA--T--------TTTT-T--TT-TGTAAATAAAAATGTTTAT-A-A---A-A-AANTCAAG-GTATNCGTG---------TTATTATGTTTATCTTTATTTAAAAGAATTAAGTTATAAATG--TATATACATTCACTTAAGTAT-ATTTGCCGCCNCA-------C-----CC---CCCC-----ACCCC--TA-------AC------AT-CAATTCCTGGATCCGCACCTGCG-CGCCCCCTCTAAACTGAAATCCTGGATCCGCCCCT
gi|1 : TTTGGTAAGCATAGGTTTT-CTTCTACACATTCACCCTGAACTCAAGTAACCATCTAAACGATTTGTGT--TAAAACAAATTAAGCACATATTTGATGTACCTAAAATATGTACAAACTTACTACTTCTAGCATGATGCTTGAGTATATTCTA-CTGTCGCCCAGTGTTTGGTCGTTTTTT-A-AAG-TTTTTTT--CCTTGTCGTTAGATCTATATCGTTTCTGGTAATT-TTACGCAAAAAAGTTTGTTATGGCGGCACCATCAACGCGAGCAAAAATTAAAA---AAAAAAAGCTGAATAGCTTTTTTTTTACATATAGATCTTCATCTGCAGAAA-A---TCAAACG---CAG------AAGAAAATGTATGTATATTTGCATGTCATGAC---GTGTAAATGA---TTTTAAATA------GACCAGTCTGCT-A---AAAC--ATGTATACAATTA-A--AATATCTACACTGCGTAGACCAAACTT--------TCAAAAGCACCGATACAGAAACAACCAAACTGGTAGACAAACTGAGGCAAACAAATAATCAATACATCACTGAAATCTATGTTAAACTTTCATCTATTTTCATTCAATGTTA----TA-TTAAAAAAAAAAGATTTAGCCAG-AAAAA--CAATATGCCATCGGCCTGCTCCTAACAAGATAGTGATGTGCTATGATTGTGTCTAAT-G-----CA-AAT-C----TAA--AGTGGTGCAGTAGCGTAATAGG--TAAAGCGTGCGC--CTGTCAATCTAGAGGTTTAACGTTCGAGCCTCCCTAGCGACA--T--------TTTT-T--TT-TGTTAATAAATACGTTTAT-A-AC--A-A-AAATCAAG-GTATACGTG---------TTATTATGTTTACCTTTATTCAAAAGAATTAAGTTATAAATA--TATATACATTCACTTAAGTATAATTTGACGCCACA-------TA----CC---CCCC-----AACCC--TA-------AC------AT-TAATTCCTGGATCTGCACATGCGCCCCCCCCTCTAAACTGAAATACTTGATCCGCCCCT
gi|10 : GCATGATGTTTGAGTATATTATA-TTGTCGCCCAGTGTTTGGTCGTTTTTT-------------T--CTTTGTTGTTAAATCTATATCGT-------AATT-TTACGCGAAACAGTTTGTTATGGCGGCACCATCAACGCGAGTAAAAATT-AAA---AAAAACAGCTGAATAGCTTTTTT---ACATGTAGATCATC---------------------TG---CAG------AAGAAAATCTATGTATATGGG-ATGTCATGACA-TGTGTAAATTA---TTTTAAATA------GGCCAGTCTGCT-A---AAAC--ATGTATACAATTA-A--AATATCTACACTGCCTAGACCAAACTT--------TCAAAAGCACCGAGACAGAAACAACCAAACTGGTTGACAAACTGAGGTAAACAAAAAATCAATACAACACTGAAATCTATG---------------TTTTCATTCAATGTTA----TA-TT-AAAAAAAAAGATTCAGCTAG--AAAA--CAATATGCCATCGGCCTGCTCCTAACAAGA-------------------TGTTTAAT-A-----CA-ATT------TTA--AATGGTGCAGTAGCGTAATAGG--TAAGGCGTGCGA--CTGTCAATCTAAAGGTCTAACGTTCGAGCCTTCCTAGCGATA--T--------TTTT-T--TTGTGTAAATAAAAATGTTTAT-A-AAAGA-A-AATTCAAG-GTAT
gi|11 : TTTGGCAAGCATAGGTTTTTCTTCTACACATTTACTCTGAACTCAAGTAACCATCTAAACGATTTGTGT--TAAAACAAATTAAGCACGTATTTAATGTACCTAAAACATGTATAAATTTCCTACTTATAGCATGATGCTTGAGTATATTCTA-CTGTCGCCCGGTGTTTGGTCTTTTTTT-T-CAG-GTTTTTT--CCTTGTCGTTAAATCTTTATCGTTTCGGGTAATT-TTACGCAAAAAAGTTTGTGATGGCGGCACCATCAAAGCGAGCAAAATTT--AA---AAAAAAAGTTGAGTAGC---TTTTTTACAAGTAGATCATCATCTGCAGAAA-G---ACAAACG---CAG------AAGAAAATGTATGTATATTTGCATGTCATGACA-TGTGTGAATGA---TTTTAAATG------GACCAGTCCGCT-A---AAAC--ATGTATACAATTA-A--AATATCTACACTGCGT---------------------AAAAGCACCGAGACAAAAAGAACCAAAATGG-GGACAAACCAAG
gi|12 : aaaaGGCAAGCATAGGTTTTTCTTCTACACATTTACCCTGAACTCGAGTAACCATCTAAACGATATGTGT--TAAAACAAATTAAGCACGTATTTGATGTACCTAAAATATGTACAAACTTACTACTTCTAGCATGATGCTTGAG----------------CCCAGTGTTTGGTCGTTTTTTTA-AGG-TTTTTTT--CCTTGTCGTTAAATCTTTATCGTTTCGGGTAATT-TTACGCGAAAAAGTTTGTAATGGCGGCACCATCAACGCGATCAAAATTT--------AACAAAGCTGAATAGC---TTTTTTACATGAAG---ATCATCTGCAGAAA-G---TCAAACG---CAG------AAGAAAATGTATGTATATTTGCATGTCATGAC---GTGTAAATGA---TTTTAAAT
gi|12 : AC--GTGTAAATGATTTTA--AATATCTACACTACGTAGACCAAACTT--------TCAAAAGCACCGAGACAGAAACAACCAAACCGGTGGACAAACTGAAGCAAACAAAatctacactacgtagaccaaactttcaaaagcaccgagacagaaacaaccaaaccggtggacaaactgaagcaaacaaa
gi|13 : ggcaagcataggtttttcttctacacatttaccctgaactcgagtaaccatctaaacgatatgtgttaaaacaaattaagcacgtatttgatgtacctaaaatatgtacaaacttactacttctagcatgatgcttgagcccagtgtttggtcgtttttttaaggtttttttccttgtcgttaaatctttatcgtttcgggtaattttacgcgaaaaagtttgtaatggcggcaccatcaacgcgatcaaaatttaacaaagctgaatagcttttttacatgaagatcatctgcagaaagtcaaacgcagaagaaaatgtatgtatatttgcatgtcatgAGACAAAAAGAACCTAACTGGTGGACAAACTGAGGCAAACAAATAATCAATACCACACTGAAATCTATGTT----TT--ATCTATTTTCGTTCAATGTAA----TA-TTAAAAAAA---GATTTAGCCAG-TAAAA--CAATATGCTATCAGCCTGCTCCTAACAAGAGAGTGATGTGCTATGATTGTGAATAAATG-----CTTAATGT----CTA--AGTGGCGCTGTAGCGTAATAGG--TAAGGCGTGTGC--ATGTCAATCCAGAGGTCTAACGTTCGAGCCTGCCTAGCGACA--T--------TTTTCT--TT-TGAAAATAAAAATGTGTAT-A-A---A-A-AAGTTAAATGTATTTGGG---------TAACTATTTTCATCTTTATTTTAAAGAATTAAGTTATAAATG--TATATACATTCAAT------T-CCTTGAT-CCGCA-------CCTGTGCT---CCCC-----GCCCCCTTA-------AC-------T-GAAATCCTGGATCCG
gi|14 : AAACTGGTGGACAAACTGAGGCAAACAAATAATCAATACAACACTGAAATCTTTGTT----T--CATCTATTTTCATTCAAAGTTA----TA-TTAAAAAAAAACGATTTAGCCAG-AAAAA--CAATATGCCATCGACCTGCTCCTAACAAGATAGTGATGTGCTATGATTGTGTCTTAG-T-----CT-AAT-T----CTA--AGTAGTGATGTAGTGTAATAGG--TAAAGCATACGC--CTGTCAATCTAAAGGTCTAACATTTGAGCCTGCCTAGCGGTAT-T--------TTTT-T--TT-TGTAAATAAAAATTTTTATAA-A---A-A-AATTCAAG-GTTTACGTG---------TTATTATGTTTAGCTTTA-TTAAAATAATTAAGTGATAAATG--TATATA---TCACTTAAGTAT-ATTTGCTGCCCTACCCCCACC-----CC---CCCC-----ACCCC--TA-------AC------AT-CAATTCCTGGATCCACAtc
gi|15 : AAAAAAAGATTTAGCCAG-AAAAAAACAATATGCCATCGTCCTGCTCCTAACAAGAGAATGATGTGCTATGATTGTGTGAATA-A-----AT-GCT-CGTGTCTA--AGTGGTAATTTAGCG-AATAGG--TAAGGCCTGCGC--CTGTCAATCTAGAGGTCTATCGTTCGAGCCTGCCTAGCGACA--T--------TTTT-T--TT-TGTAAATAAAAATGTTTATAA-A---A-A-AATTCAAG-GTATTTGTG---------TTATTATTTTTATCTTTATTTAAAAGAATTAAGTTATAAATG--TATATACATTCACTAAAATAT-ATT-----CCCCC-------C-----CC---CCCC-----CCTTC--TA-------AC------AT-CCATTCCTGGAATCGCACCac
gi|16 : t----TTTCATCTATTTTCATTCAATGTTA----TA-TTAAAA-AAAAAGATTTAGCCAG-AAAAA--CAATATGCCATCGGCCTGCTCCTAACAAGATAGTGATGTGCTATGATTTTGTATAAA-A-----CT-AAT-T----CTA--AGTGGTGCTGTAGCGTAATAGG--TAGGGTGTGTGC--CTGTCAATCTAGAGGTCTAACGTTCGAGCTTGCCTAACAACA--T--------TTGT-T--TT-TGTAAATAAAAATATTTAT-T-A---A-A-AA
gi|17 : aattaaagttacaaaaaaaataTTGGCAAACATAGGTTTTT-TTCTACACATTTACTCTAAACTCAAGTTACCATCTAAACGAATTATGTTATAAAACAAATTAAGCACGTATTTAAAGTACC
gi|18 : ttgttgagtttctaatcagtactgttctgctcttgcgcttatggtattttatttatagactatagatataaagcaagggcagattcaggggggtacccccccccaaaaaaaaaaataaataataataataaataaataaaaaaaataaaaaaTTGGCAAGCATAGGTTTTTCTTCTACACATATACTCTGAACTCAAGTTACCATTTAAACGAATTGTGT--TAAAACAAATTAAGCACATACTTAAAGTA
gi|19 : tgttgagtttctaatcagtactgtactgctcttgcgcttatggtatttaatttatagactatagatataaagcaagagcagattcaggtgggaacccccacaccccgcacccccaccccccaaaaatattaaaaataaaaataaaaaaGCTGATGTGAAACAGGCTTAAGGCGTGCGC--GTGTTAATCTAGAGGCCTAACGTTCGAGGCTGCCTAGCGACA--T--------TTTT-TTCTT-TGTAAATAAAACT--------------------TCAAG-GTATTCGCG---------TTATCATTTTTATCTTTATTTAAAAGAATTAAGTTATAAATG--CATATAGATTCA
gi|2 : TTTGGCAAGCATAAGTTTTCCTTCTACACATTTACTCTGAACTCAAGTAACCACATAAACGATTTGTGT--TAAAACAAAATAAGCACGTATTTAATGTTCCTAAAACATGTATCAACTTACTACTTCTAGCATGATGCTTGAGTATATTCTACCTGTCGCCCAGTGTTTGGT-ATTTTTT-ATAAGTTTTTTTT--CCTTGTCGTTAAATCTTTATCGTTTCGGGTTATT-TTACGCGAAAAAGTTTGTGATGGC-GTGCCG-CA--GCGAGCAAAAATT--AA---AAAATAAGTTGAATAGC---TTTTTTACAAGTAGATCATCATCTGCAGAAA-G---TCAAACG---CAG------AAGAAAATGTA-GTATATTTGCATGTCATGACA-TGTGTAAATAA---TTTTAGATG------GACCAGTCTGCT-A---AAAC--ATGTATACAATTA-A--GATATCTACACTATGT---------------------AAAAGCACCGAGACAGGAAGAACCAAACTGGTGGACAAATTGACGCAAACAAATAATCAATACAACACTGAAATCTACG------ATTCATCTATTTCCATTCAATGTTA----TA-TT---AAATAAAGATTTAGCCAGAAAAAA--CAATATGCCATCGGCCTGCCCCTAACATGAGAGTGATGTGCTATGATTGTGT-GAAT-AAATGTTC-AAT-T----CTA--AGTGGTACTTTAGCGTAATAGG--TAAGGCGTGCGC--CTGTTAATCTAGAGGTCTATCGTTCGAGCCTGCCTAGCGGCA------------TTT-T--TT-TGTAAAT-AAAACATTTAT-A-A---A-A-AAA-CAAG-GTATTCGTG---------TTATTATTTGTATCTTTATTTAAAAGAATTAAGTTATAAATA--TATATACACTCACTAAAATAT-AT---CC-CCCCA------------------CCAC-----ACCCC--TA-------AC------AT-CCATTCCTGGATTCGCACCTtggtaataatacagtgacgtcagcgtac
gi|20 : tagaatattgccatcaaggacgtattcaggcgggcgggcacccgcacccccccccccccccctccctctaaaaACAA-AT-GCGATGTGCTATAATTTAGTGTAAG-A-----CT-AAT-T----CTA--AGTGGTGCTGTAGCGTAATAGG--TAAGGCCTGCGC--CTGTCAATCTAGAGGTCTAACGTTCGAACCTGCCTAGTGACA--T--------TTTT-T--TT-TGTAA----------------------------TCAAG-GTATACATG---------TTATTATGTTTATCTTTATTTAAAAGAATTA
gi|21 : CGATTTGTGT--TAAAACAAATTAAGCACGTTTTTGATGTACCTAAA-TATGTTCAAACTTACTACTTCTAGCATGATGCTTGAGTATATTCTA-CTTACGCCCAACGTTTGGTCTTTTTTT-A----------------TTATCGTTAAACC
gi|23 : tctatCTTAACGACA--T--------TTTT-TCTTT-TGTAAATAAAAATGTTTTT-A-A---A-A-AAATCAAG-GTATTCGTA---------TTATTATTTTTATCATTA
gi|24 : aggtggggcgcacCTTAACGACA--T--------TTTT-TCTTT-TGTAAATAAAAATGTTTTT-A-A---A-A-AAATCAAG-GTATTCGTA---------TTATTATTTTTATCATTA
gi|26 : ggtggggcgcacGCAT-GGTTTTTCTTCTACACATTTACCCTGAACTCAAGTa
gi|27 : -------AC------ATTCAATTCCTGGACCCGCACC
gi|3 : atgtatatTTTGGCAAGCATAGGTTTTTCTTCTACACATTTACTCTGAACTCAAGTAACCATCTAAACCATTTGTGT--CAAA-CAAATTAAGCACATATTTAATGTACCTAAACTATGTACAAACGTACTACTTCTAGCATGATGCTTGAGTATATTCT----GTCGCCCAGTGTTT---------TT-A-A-G-TTTTTTT--TCTTGTCGTTAAATCTTTATCGTTTCGGGTAATT-TTACGCGAAAAAGTTTGCTATGGCGGCACCATCAACGCGAGCAAAAATTAAAA---AAA------------GCTT--------CATGTAGAACATCATTTGCAGAAA-G---TCAAACG---CAG------AAGAAAATGTATGTATATTTGCATGTCATGACA-TGTGTAAATGA---TTTTAAATG------GACCAGTCTGCT-A---AAAC--ATGTATAATATTA-A--AATATCTACACTGCGTAGACCAAACTT--------TCAAAAGCACCGAG--------------ACTGGTGGACAAACTGAGGCAAATAAATAATCAATACAACACTGAAATCTATG------TTTCATCTATTTTCATTCAATGTTATCAGTA-TTTAAAAAAAAA----TAGCCAG-AAAAA--CAATATGCCATCTGCCAGCTCCTAACAAGATAATGATGTGCTATGATTGTGTCTAAG-A-----CT-AAT-T----CAA--AGTGGTGCTGTAGCGTAATAGG--CAATGCGTGTGCGGTCGTCAATCTATAGGTCTAACGTTCAAGCCTGCCTAGCAACA--T--------TTTT-T--TT-TGTAAATAAAAATGTTTAT-A-A---A-A-AATTCAAG-GTATGCGTG---------TTATTATGTTTATCTTTATTTAAAAGAATTAAGTTATAAATG--TATATACATTCACTTAAGTAT-ATTTGCCGCCACA-------------------CCC-----ACCCC--TA-------AC------AT-CAATTTCTGGATCCGCAC
gi|4 : tcaagggcggattcagggtgccccaacatcccctaaaaAACGATTTGTGT--TAAAACAAATTAAGCACGTATTTGATGTACCTAAAGTATGTACAAACATACTACTTCTAGCATGATGCTTGAGTATATTCTA-CTGTCTTTCAGTGTTTGGTCGTTTTTT-A-AAG-TTTTTTTTTCCTTGTCGTTAAATCTTTACCGTTTCGGGTAATT-TTACGCGAAAAAGTTTGTTATGGTGGCACCATCAACGCGAGCAAAAATTTGAA---AAAAA--GCTGAATAACTTTTTTT--ACATGTATATCATCATCTGCAGAAA-G---TCAAACG---CAG------AAGAAAATGTATGTATATTTGTATGTCATGACA-TGTGTAAATGA---TTTTAAATG------GACCAGTCTGCT-A---AAAC--ATGTATACAATTA-A--AATATCTACACGGAGTAGACCAAACTT--------TCAATAGCACCGAGACAGAAAGAATCAAA------GACAAACTGAGGCTTACACATTATCAATACAACATTGAAATCTATATT----T--CATCTATTTTCATTCAATGTTA----TA-TTAAAAAAAA--GATTTAGTCAG-AAAAA--CAATATGCCATCGGCCTGCTCCTAACAAGAAAGTGACGTGCTATGATTGTGTCTAAG-A-----CT-AAT-T----CTA--AGTGGTGCTGTAGTGTAACAGG--TATGACGTGCAC--CTGTCAATCTAGAGGTCTAACGTTCGAGTCTGCCTAGCGACA--T--------TTTT-T--TT-TATAAATAAAAATGTTTAT-C-G---ATA-AATTCAAG-GTATACCTA---------TTATAATGTTTATCTTTATTTAAAAGAATTAAGTTATAAATG--TTTTTACATTCACTTAAGTAT-ATTTGCAGCCCCC-------C-----CC---CCCCCCCCCACCCC--AACCCTTTTAC------TT-CAATTCCTGTATCCGCATCTGCG-CACCCCTTCTAAACTGAAATCGTGCATCCGCTCCT
gi|5 : ACTCAAGTAAGCATCTTAACGATTTGTGT--TAAAACAAATTAAGCACGTATTTGATGTACCTAAAATATGTACAAACTTATTACTCCTA------------------------CTGTCGCCAAGTGTTTGGTCGATTTTT----------TTCC--CCTTATCGTTAAATCTTTATCGTTTCGGGTAATT-TTACGCGAAAAAGTTTGTTATAGCGGCACTATCAACACGAACAAAAAGTCAAACGCAGAAGAAAATGTATG----TATATTTGCAT----ATCATGATATGTGTAAATGATTTTAAATGGATCAGTCTGCTAA-AACATGTATACA-ATTAAAATATC-T-ACACTGCGTAGACCAAACCTTCAAAAGCATCAAGACCAAACTGGT-GGACAAACTGAGGCAAACAATTA-ATGAATA-CAACACTG
gi|5 : CAAAAA-G---TCAAACG---CAG------AAGAAAATGTATGTATATTTGCATATCATGATA-TGTGTAAATGA---TTTTAAATG------GATCAGTCTGCT-A---AAAC--ATGTATACAATTA-A--AATATCTACACTGCGTAGACCAAACCT--------TCAAAAGCATCAAGAC---------CAAACTGGTGGACAAACTGAGGCAAACAATTAATGAATACAACACTGAAATCTATG------TTTCATCTATTTACATTCAATGCTA----TATTTAAAAAAAAAAGATTTAGCAAGAAAAAA--CAATATGCCATCGGCCTGCTCCTAACAAGATACTGATGGCCTATGATTGTGTCTAAG-A-----CT-AAT-T----CTT--AGTGGTGCTGTAGCGTAATATG--TTAGGCGTGCGC--CTGTCAATCTAGACGTCTGACGTTCGAGACTGCCTAACGACA--TTATTTTTATTTT-T--TT-TG-AAATAAAAAAAATTAT-ACA---A-A-AATTCAAG-TTATACGTGTTATTACGTTTATTATGTTTATTTTTATTTGAAAGAATTAAGTTATAAATG--TATTTACATTCACTTAAGTAT-ATTTGTCG-------------------C---CCCC-----ATCCC--TA-------AC------AT-CAGTTCCTGGATCTGCGCCTGCG-CGCCCCCTCTAATCTGAAATCCTGGATCCACACCTaaatctatgtttcatctatttacattcaatgctatatttaaaaaaaaaagatttagcaagaaaaaacaatatgccatcggcctgctcctaacaagatactgatggcctatgattgtgtctaagactaattcttagtggtgctgtagcgtaatatgttaggcgtgcgcctgtcaatctagacgtctgacgttcgagactgcctaacgacattatttttattttttttgaaataaaaaaaattatacaaaaattcaagttatacgtgttattacgtttattatgtttatttttatttgaaagaattaagttataaatgtatttacattcacttaagtatatttgtcgcccccatccctaacatcagttcctggatctgcgcctgcgcgccccctctaatctgaaatcctggatccacacct
gi|6 : actcaagtaagcatcttaacgatttgtgttaaaacaaattaagcacgtatttgatgtacctaaaatatgtacaaacttattactcctactgtcgccaagtgtttggtcgatttttttccccttatcgttaaatctttatcgtttcgggtaattttacgcgaaaaagtttgttatagcggcactatcaacacgaaTTTGGCAAGCATAAGTTTTTCTTCTACACATTTACTCTGAACTAAAGTTACTATCAAAACGAATTGTGT--TGAAACACATTAAGCACGTATTTAAAGTACCTAAAATATGTATAAACTTACTACTTCTAGCATGATGCTTCAGTATATTCTA-CTGTAGCCCAGTGTTTGGTCCTTTTTT---AAG-TTTT
gi|6 : taagatgaacgtgttcttgagtttctaatcagtactgtactgctattgcgcttcattgtattttttctagactatagataaaacttaaaggcggattcaggggttaccccatcccccaaacaACCACCAAATCGAGCAATAATTGAAA---AAAA---GCTGAATAGCTTTTTT---ACAAGTAGATCGTCATCTGCAGAAA-G---TCAAACG---CAG------AGGAAAATGTATGTATATTTGCATGTCATGACA-TGTGTAAATGA---TTTTAAATG------GACCAGTCTGCT-A---AAAC--ATGTATACAATTA-A--AATATCTACACTGCGTATGCCAAACCT--------TCAAAAGCACCGAGACAAAAAGAATCAAACTGGTGGAGAAACTGAGGCAAACAAATAATCAGTACAACACTGAAATCTATGTT----TT--ATCTATTTTCATTCAATGTTA----TA-TT----AAAAAAGATTTAGCCAG-TAAAA--CAATATGCCATTAGCCTGCTCCTAACAAGAGAGTGATGTGaccaccaaatcgagcaataattgaaaaaaagctgaatagcttttttacaagtagatcgtcatctgcagaaagtcaaacgcagaggaaaatgtatgtatatttgcatgtcatgacatgtgtaaatgattttaaatggaccagtctgctaaaacatgtatacaattaaaatatctacactgcgtatgccaaaccttcaaaagcaccgagacaaaaagaatcaaactggtggagaaactgaggcaaacaaataatcagtacaacactgaaatctatgttttatctattttcattcaatgttatattaaaaaagatttagccagtaaaacaatatgccattagcctgctcctaacaagagagtgatgtg
gi|7 : taagatgaacgtgttcttgagtttctaatcagtactgtactgctattgcgcttcattgtattttttctagactatagataaaacttaaaggcggattcaggggttaccccatcccccaaacatttggcaagcataagtttttcttctacacatttactctgaactaaagttactatcaaaacgaattgtgttgaaacacattaagcacgtatttaaagtacctaaaatatgtataaacttactacttctagcatgatgcttcagtatattctactgtagcccagtgtttggtccttttttaagttttATTATTACGCGAAAAAATTTGTTATGGCGGC
gi|7 : TGAATAGCTTTTTTT--ACATGTAGATCATCTTCTGCAGAAA-G---TCAAACG---CAG------AAGAAAATGTATGTATATTTGCATGTCATGATA-TGAGTAAATAA---TTTTAAATG------GACCAGTCTGCT-A---AAAC--ATGTATACAATTA-A--AATATCCACACTGCGTAGACCAAACTTCCAAACTTTCAAAAGCACCGAGACAGAAACAACCAAACTGGTGGACAAACTGAGGCAAACAAATAATCAATACAACACTGAAATCTATATT----T--CATCTATTTTCATTCA-------------------------------GCCAG-AAAAA--CAATATGCCATCGGCCTGCTCCTAACAAGATAGTGCTGTGCTATGATTGTGTTTAAG-A-----CT-AAT-T----CTA--AGTGGTGCTGAAGCGTAATAGG--TAAGGCGTGCGC--CTGTCAATCTAGAGGTCTAATGTTCGAGCCTGCCTAGCGCCATTT--------TTTT-T--TT-TGTAAATAATAATGTTTATAA-A---A-A-AATTCAAG-GTATACGTG---------TTATTATGTTTATCTTTATTTCAAAAAATTAAGTTATAAATGTATATATACATTCACTTAAGTAT-ATTTGCCGCCGCA-------C-----CCCCGCCCC-----TCTCC--CA-------ACCCCCCTAT-CAGTTCCTGGATCTGCACCTGCA-TGCCCCCTCTAAACTGAAATCCTGGGTCCTCCCCTtttgaatagctttttttacatgtagatcatcttctgcagaaagtcaaacgcagaagaaaatgtatgtatatttgcatgtcatgatatgagtaaataattttaaatggaccagtctgctaaaacatgtatacaattaaaatatccacactgcgtagaccaaacttccaaactttcaaaagcaccgagacagaaacaaccaaactggtggacaaactgaggcaaacaaataatcaatacaacactgaaatctatatttcatctattttcattcagccagaaaaacaatatgccatcggcctgctcctaacaagatagtgctgtgctatgattgtgtttaagactaattctaagtggtgctgaagcgtaataggtaaggcgtgcgcctgtcaatctagaggtctaatgttcgagcctgcctagcgccatttttttttttgtaaataataatgtttataaaaaaattcaaggtatacgtgttattatgtttatctttatttcaaaaaattaagttataaatgtatatatacattcacttaagtatatttgccgccgcacccccgcccctctcccaacccccctatcagttcctggatctgcacctgcatgccccctctaaactgaaatcctgggtcctcccctc
gi|8 : attattacgcgaaaaaatttgttatggcggcttTTTGGCAAGCATAGGTTTTTCTTCTACACATTTACCCTGAACTCAAGTAACCATCTGAAAGAGTTGTGT--TAAAACAAATTAAGCACGTATTTGATGTACCTTAAATATGTACAAACT-GCTACTTCTATCATGATGCTTGAGTATATTCTA-ATGTCGCCCAGTGTTTGGTCGTTTTTT-A-A-G-TTTTTTT--CCTTGTCGTTAAATCTTAATCGTTTCGGGTAATT-TT-CACGAAAAAGTTTGTTATGGCGGCACCATCAACACGAGCAAAAATTGAAA---AAAA---GCTGAATAGCTTTTTTT--ACATATAGATCATCATCTGCAGAAA-G---TCAAACG---CAG------AAGAAAATGTATGTATATTTGCATGTCATGACA-TGTGT----GA---TTTAAAATT------GACCAGTCTGCT-A---AAAC--ATGTATACAATTA-A--AATATCCACACTGCGCAGACCAAACCT--------TCAAAAGCACAGAGACAGAAACAACCAAACTGGTGGACAAACTGAGGCAAACAAATAATCAATACAACACTGAAATCTATG------TTTCATCTATTTTCATTCAATGTTA----TA-TT---AAAAAAAGATTTAGCCAG-AAAAA--CAATATGCCATCAGCCTGCTCCTAACAAGATAGTGATGTGCTATGATTGTGTCTAAG-A-----CT-AAT-T----CTA--AGTGGTACTc
gi|9 : ggcgcaccccccccccccttaaaaACTTCTAGCATGATGCTTGAGTATATTCTA-CTGTCGCCCAGTGTTTGGTC-TTTTTT-A-A-G-TTTTTTT--CCTTGTCGTTAAATCGTTATC-TTTCGGGTAATT-TTACGCGTAAAAGATTGTTGTGGCGGCACCATCAACGCGAGCAAAATTTTAAA---AAAAA--TCTGAATAGCTTTTTTATTACATGTAGATCATCATCTGCAGAAA-G---TCAAACG---CAG------AAGAAAATGTATGTATATTTGCATGTCATGACA-TGTGCAAATAA---TTTTAAATG------GACCAGTCTGCTAA---AAAC--ATGTATACAATTA-A--AATATCAACACTGCATAGACCAAACCT--------TCAAAAGCACCGAGACAGAAACAACCAAACTGGTGGATAAACTGAGGCAAACAAATAATAAATACAGCAATGAAATCTATG------TTTCATTTATTTTCATTCAATGTTA----TA-TT--AAAAAAAATGTTTAGCCAG-AAAAA--CAATATGCCATCGGCCTGCTCCTAACAAGATAGTCATGTGCAATGATTGTGTCTACG-T-----CT-AAT-T----CTAAGAGTGGTGCTGTAGCGTAATAGG--TAAGGCGTGTGC--CTG-----CT---------------GAGCC---------ACAT-T--------TTTT-T--TT-TGTAAATAAAAATGTTTAT-A-A---A-ACAATTCAAT-GGATACA------------TATTATGTTTATCTTTATTTAAAAGAATTAAGTTATAAATG--TATAT
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|22 ): GTTCTTGAGTTTCTTATCAATACTGCTCTGCTCATGCGCTTTATGGTATTTTATTTCTAGACTATATATATAAAGCAAGGGTGGATTCAGGGGGGT
Unaligned ( gi|25 ): TTTAGAGGTTATTCAGATACCTAAACCCAGGCTTAACTAAA
Alignments
lowQualScore : 22222 11 111 11111111 333333 11 11111111111 11 111111111 11111111 333333333333333333 2222222 111111 1
lowQualScore : 44 3 3 33333 3 55 3 3 55 666 66 111 999 3 555 555 888888 3 555 999999 3 555 44 3 44 22222222 3 111111 44 6666 3 99 5 33 2 99999 77 33 5 33 33 33 11111111111 2 00 2 7 2 666 2 2 33 1 111111111 0 55 2 4 44444444 2 999999999999999999 0000000 111111 4 0 0 0 0
lowQualScore : .. . . ..... . .. . . .. ... .. ... ... . ... ... ...... . ... ...... . ... .. . .. ........ . ...... .. .... . .. . .. . ..... .. .. . .. .. .. ........... . .. . . . ... . . .. . ......... . .. . . ........ . .................. ....... ...... . . . . .
lowQualScore : 66 3 8 77777 3 00 6 6 55 444 33 444 555 1 444 444 888888 1 444 666666 3 888 22 1 22 11111111 5 111111 55 5555 1 55 7 99 4 11111 99 33 7 99 99 99 66666666666 5 33 5 5 5 999 5 5 66 0 444444444 7 00 2 4 22222222 6 111111111111111111 6666666 555555 0 0 2 2 2
consensus : TTTGGCAAGCATAGGTTTTTCTTCTACACATTTACTCTGAACTCAAGTAACCATCTAAACGATTTGTGT--TAAAACAAATTAAGCACGTATTTGATGTACCTAAAATATGTACAAACTTACTACTTCTAGCATGATGCTTGAGTATATTCTA-CTGTCGCCCAGTGTTTGGTCGTTTTTT-A-AAG-TTTTTTT--CCTTGTCGTTAAATCTTTATCGTTTCGGGTAATT-TTACGCGAAAAAGTTTGTTATGGCGGCACCATCAACGCGAGCAAAAA-TT-AAA---AAAAAAAGCTGAATAGCTTTTTTTTTACATGTAGATCATCATCTGCAGAAA-G---TCAAACG---CAG------AAGAAAATGTATGTATATTTGCATGTCATGACA-TGTGTAAATGA---TTTTAAATG------GACCAGTCTGCT-A---AAAC--ATGTATACAATTA-A--AATATCTACACTGCGTAGACCAAACTT--------TCAAAAGCACCGAGACAGAAACAACCAAACTGGTGGACAAACTGAGGCAAACAAATAATCAATACAACACTGAAATCTATGTT----TTTCATCTATTTTCATTCAATGTTA----TA-TTAAAAAAAAAAGATTTAGCCAG-AAAAA--CAATATGCCATCGGCCTGCTCCTAACAAGATAGTGATGTGCTATGATTGTGT--C--TAA--G-ACTAAT-TCTA--AGTGGTGCTGTAGCGTAATAGG--TAAGGCGTGCGC--CTGTCAATCTAGAGGTCTAACGTTCGAGCCTGCCTAGCGACA--T--------TTTT-T--TT-TGTAAATAAAAATGTTTAT-A-A---A-A-AA-TTCAAGGTATNCGTG---------TTATTATGTTTATCTTTATTTAAAAGAATTAAGTTATAAATG--TATATACATTCACTTAAGTAT-ATTTG-----CCGCCNCA-------C-----CC---CCCCACCCC-------TAAC------AT-CAATTCCTGGATCCGCACCTGCG-CGCCCCCTCTAAACTGAAATCCTGGATCCGCCCCT
Reference ( family-2158 ) : TTTGGCAAGCATAGGTTTTTCTTCTACACATTTACTCTGAACTCAAGTAACCATCTAAACGATTTGTGT--TAAAACAAATTAAGCACGTATTTGATGTACCTAAAATATGTACAAACTTACTACTTCTAGCATGATGCTTGAGTATATTCTA-CTGTCGCCCAGTGTTTGGTCGTTTTTT-A-AAG-TTTTTTT--CCTTGTCGTTAAATCTTTATCGTTTCGGGTAATT-TTACGCGAAAAAGTTTGTTATGGCGGCACCATCAACGCGAGCAAAAA-TT-AAA---AAAAAAAGCTGAATAGCTTTTTTTTTACATGTAGATCATCATCTGCAGAAA-G---TCAAACG---CAG------AAGAAAATGTATGTATATTTGCATGTCATGACA-TGTGTAAATGA---TTTTAAATG------GACCAGTCTGCT-A---AAAC--ATGTATACAATTA-A--AATATCTACACTGCGTAGACCAAACTT--------TCAAAAGCACCGAGACAGAAACAACCAAACTGGTGGACAAACTGAGGCAAACAAATAATCAATACAACACTGAAATCTATGTT----TTTCATCTATTTTCATTCAATGTTA----TA-TTAAAAAAAAAAGATTTAGCCAG-AAAAA--CAATATGCCATCGGCCTGCTCCTAACAAGATAGTGATGTGCTATGATTGTGT--C--TAA--G-ACTAAT-TCTA--AGTGGTGCTGTAGCGTAATAGG--TAAGGCGTGCGC--CTGTCAATCTAGAGGTCTAACGTTCGAGCCTGCCTAGCGACA--T--------TTTT-T--TT-TGTAAATAAAAATGTTTAT-A-A---A-A-AA-TTCAAGGTATNCGTG---------TTATTATGTTTATCTTTATTTAAAAGAATTAAGTTATAAATG--TATATACATTCACTTAAGTAT-ATTTG-----CCGCCNCA-------C-----CC---CCCCACCCC-------TAAC------AT-CAATTCCTGGATCCGCACCTGCG-CGCCCCCTCTAAACTGAAATCCTGGATCCGCCCCT
gi|1 : TTTGGTAAGCATAGGTTTT-CTTCTACACATTCACCCTGAACTCAAGTAACCATCTAAACGATTTGTGT--TAAAACAAATTAAGCACATATTTGATGTACCTAAAATATGTACAAACTTACTACTTCTAGCATGATGCTTGAGTATATTCTA-CTGTCGCCCAGTGTTTGGTCGTTTTTT-A-AAG-TTTTTTT--CCTTGTCGTTAGATCTATATCGTTTCTGGTAATT-TTACGCAAAAAAGTTTGTTATGGCGGCACCATCAACGCGAGCAAAAA-TTAAAA---AAAAAAAGCTGAATAGCTTTTTTTTTACATATAGATCTTCATCTGCAGAAA-A---TCAAACG---CAG------AAGAAAATGTATGTATATTTGCATGTCATGAC---GTGTAAATGA---TTTTAAATA------GACCAGTCTGCT-A---AAAC--ATGTATACAATTA-A--AATATCTACACTGCGTAGACCAAACTT--------TCAAAAGCACCGATACAGAAACAACCAAACTGGTAGACAAACTGAGGCAAACAAATAATCAATACATCACTGAAATCTATGTTAAACTTTCATCTATTTTCATTCAATGTTA----TA-TTAAAAAAAAAAGATTTAGCCAG-AAAAA--CAATATGCCATCGGCCTGCTCCTAACAAGATAGTGATGTGCTATGATTGTGT--C--TAA--T-GCAAAT-CTAA--AGTGGTGCAGTAGCGTAATAGG--TAAAGCGTGCGC--CTGTCAATCTAGAGGTTTAACGTTCGAGCCTCCCTAGCGACA--T--------TTTT-T--TT-TGTTAATAAATACGTTTAT-A-AC--A-A-AA-ATCAAGGTATACGTG---------TTATTATGTTTACCTTTATTCAAAAGAATTAAGTTATAAATA--TATATACATTCACTTAAGTATAATTTG-----ACGCCACA-------TA----CC---CCCCAACCC-------TAAC------AT-TAATTCCTGGATCTGCACATGCGCCCCCCCCTCTAAACTGAAATACTTGATCCGCCCCT
gi|10 : GCATGATGTTTGAGTATATTATA-TTGTCGCCCAGTGTTTGGTCGTTTTTT-------------T--CTTTGTTGTTAAATCTATATCGT-------AATT-TTACGCGAAACAGTTTGTTATGGCGGCACCATCAACGCGAGTAAAAA-TT-AAA---AAAAACAGCTGAATAGCTTTTTT---ACATGTAGATCATC---------------------TG---CAG------AAGAAAATCTATGTATATGGG-ATGTCATGACA-TGTGTAAATTA---TTTTAAATA------GGCCAGTCTGCT-A---AAAC--ATGTATACAATTA-A--AATATCTACACTGCCTAGACCAAACTT--------TCAAAAGCACCGAGACAGAAACAACCAAACTGGTTGACAAACTGAGGTAAACAAAAAATCAATACAACACTGAAATCTATG---------------TTTTCATTCAATGTTA----TA-TT-AAAAAAAAAGATTCAGCTAG--AAAA--CAATATGCCATCGGCCTGCTCCTAACAAGA-------------------TGT--T--TAA--T-AC-AAT-TTTA--AATGGTGCAGTAGCGTAATAGG--TAAGGCGTGCGA--CTGTCAATCTAAAGGTCTAACGTTCGAGCCTTCCTAGCGATA--T--------TTTT-T--TTGTGTAAATAAAAATGTTTAT-A-AAAGA-A-AA-TTCAAGGTAT
gi|11 : TTTGGCAAGCATAGGTTTTTCTTCTACACATTTACTCTGAACTCAAGTAACCATCTAAACGATTTGTGT--TAAAACAAATTAAGCACGTATTTAATGTACCTAAAACATGTATAAATTTCCTACTTATAGCATGATGCTTGAGTATATTCTA-CTGTCGCCCGGTGTTTGGTCTTTTTTT-T-CAG-GTTTTTT--CCTTGTCGTTAAATCTTTATCGTTTCGGGTAATT-TTACGCAAAAAAGTTTGTGATGGCGGCACCATCAAAGCGAGC-AAAA-TT-TAA---AAAAAAAGTTGAGTAGC---TTTTTTACAAGTAGATCATCATCTGCAGAAA-G---ACAAACG---CAG------AAGAAAATGTATGTATATTTGCATGTCATGACA-TGTGTGAATGA---TTTTAAATG------GACCAGTCCGCT-A---AAAC--ATGTATACAATTA-A--AATATCTACACTGCGT---------------------AAAAGCACCGAGACAAAAAGAACCAAAATGG-GGACAAACCAAG
gi|12 : aaaaGGCAAGCATAGGTTTTTCTTCTACACATTTACCCTGAACTCGAGTAACCATCTAAACGATATGTGT--TAAAACAAATTAAGCACGTATTTGATGTACCTAAAATATGTACAAACTTACTACTTCTAGCATGATGCTTGAG----------------CCCAGTGTTTGGTCGTTTTTTTA-AGG-TTTTTTT--CCTTGTCGTTAAATCTTTATCGTTTCGGGTAATT-TTACGCGAAAAAGTTTGTAATGGCGGCACCATCAACGCGATCAAAAT-TT--------AACAAAGCTGAATAGC---TTTTTTACATGAAG---ATCATCTGCAGAAA-G---TCAAACG---CAG------AAGAAAATGTATGTATATTTGCATGTCATGAC---GTGTAAATGA---TTTTAAAT
gi|12 : AC--GTGTAAATGATTTTA--AATATCTACACTACGTAGACCAAACTT--------TCAAAAGCACCGAGACAGAAACAACCAAACCGGTGGACAAACTGAAGCAAACAAAatctacactacgtagaccaaactttcaaaagcaccgagacagaaacaaccaaaccggtggacaaactgaagcaaacaaa
gi|13 : ggcaagcataggtttttcttctacacatttaccctgaactcgagtaaccatctaaacgatatgtgttaaaacaaattaagcacgtatttgatgtacctaaaatatgtacaaacttactacttctagcatgatgcttgagcccagtgtttggtcgtttttttaaggtttttttccttgtcgttaaatctttatcgtttcgggtaattttacgcgaaaaagtttgtaatggcggcaccatcaacgcgatcaaaatttaacaaagctgaatagcttttttacatgaagatcatctgcagaaagtcaaacgcagaagaaaatgtatgtatatttgcatgtcatgAGACAAAAAGAACCTAACTGGTGGACAAACTGAGGCAAACAAATAATCAATACCACACTGAAATCTATGTT----TT--ATCTATTTTCGTTCAATGTAA----TA-TTAAAAAAA---GATTTAGCCAG-TAAAA--CAATATGCTATCAGCCTGCTCCTAACAAGAGAGTGATGTGCTATGATTGTGA--A--TAAATG-CTTAATGTCTA--AGTGGCGCTGTAGCGTAATAGG--TAAGGCGTGTGC--ATGTCAATCCAGAGGTCTAACGTTCGAGCCTGCCTAGCGACA--T--------TTTTCT--TT-TGAAAATAAAAATGTGTAT-A-A---A-A-AAGTTAAATGTATTTGGG---------TAACTATTTTCATCTTTATTTTAAAGAATTAAGTTATAAATG--TATATACATTCAAT------T-CCTTG-----AT-CCGCA-------CCTGTGCT---CCCCGCCCCCT-----TAAC-------T-GAAATCCTGGATCCG
gi|14 : AAACTGGTGGACAAACTGAGGCAAACAAATAATCAATACAACACTGAAATCTTTGTT----T--CATCTATTTTCATTCAAAGTTA----TA-TTAAAAAAAAACGATTTAGCCAG-AAAAA--CAATATGCCATCGACCTGCTCCTAACAAGATAGTGATGTGCTATGATTGTGT--C--TTA--G-TCTAAT-TCTA--AGTAGTGATGTAGTGTAATAGG--TAAAGCATACGC--CTGTCAATCTAAAGGTCTAACATTTGAGCCTGCCTAGCGGTAT-T--------TTTT-T--TT-TGTAAATAAAAATTTTTATAA-A---A-A-AA-TTCAAGGTTTACGTG---------TTATTATGTTTAGCTTTA-TTAAAATAATTAAGTGATAAATG--TATATA---TCACTTAAGTAT-ATTTG-----CTGCCCTACCCCCACC-----CC---CCCCACCCC-------TAAC------AT-CAATTCCTGGATCCACAtc
gi|15 : AAAAAAAGATTTAGCCAG-AAAAAAACAATATGCCATCGTCCTGCTCCTAACAAGAGAATGATGTGCTATGATTGTGT--GAATAA--ATGCTCGTGTCTA--AGTGGTAATTTAGCG-AATAGG--TAAGGCCTGCGC--CTGTCAATCTAGAGGTCTATCGTTCGAGCCTGCCTAGCGACA--T--------TTTT-T--TT-TGTAAATAAAAATGTTTATAA-A---A-A-AA-TTCAAGGTATTTGTG---------TTATTATTTTTATCTTTATTTAAAAGAATTAAGTTATAAATG--TATATACATTCACTAAAATAT-ATT----------CCCCC-------C-----CC---CCCCCCTTC-------TAAC------AT-CCATTCCTGGAATCGCACCac
gi|16 : t----TTTCATCTATTTTCATTCAATGTTA----TA-TTAAAA-AAAAAGATTTAGCCAG-AAAAA--CAATATGCCATCGGCCTGCTCCTAACAAGATAGTGATGTGCTATGATTTTGT--A--TAA--A-ACTAAT-TCTA--AGTGGTGCTGTAGCGTAATAGG--TAGGGTGTGTGC--CTGTCAATCTAGAGGTCTAACGTTCGAGCTTGCCTAACAACA--T--------TTGT-T--TT-TGTAAATAAAAATATTTAT-T-A---A-A-AA-
gi|17 : aattaaagttacaaaaaaaataTTGGCAAACATAGGTTTTT-TTCTACACATTTACTCTAAACTCAAGTTACCATCTAAACGAATTATGTTATAAAACAAATTAAGCACGTATTTAAAGTACC
gi|18 : ttgttgagtttctaatcagtactgttctgctcttgcgcttatggtattttatttatagactatagatataaagcaagggcagattcaggggggtacccccccccaaaaaaaaaaataaataataataataaataaataaaaaaaataaaaaaTTGGCAAGCATAGGTTTTTCTTCTACACATATACTCTGAACTCAAGTTACCATTTAAACGAATTGTGT--TAAAACAAATTAAGCACATACTTAAAGTA
gi|19 : tgttgagtttctaatcagtactgtactgctcttgcgcttatggtatttaatttatagactatagatataaagcaagagcagattcaggtgggaacccccacaccccgcacccccaccccccaaaaatattaaaaataaaaataaaaaaGCTGATGTGAAACAGGCTTAAGGCGTGCGC--GTGTTAATCTAGAGGCCTAACGTTCGAGGCTGCCTAGCGACA--T--------TTTT-TTCTT-TGTAAAT---------------A---A-A-AC-TTCAAGGTATTCGCG---------TTATCATTTTTATCTTTATTTAAAAGAATTAAGTTATAAATG--CATATAGATTCA
gi|2 : TTTGGCAAGCATAAGTTTTCCTTCTACACATTTACTCTGAACTCAAGTAACCACATAAACGATTTGTGT--TAAAACAAAATAAGCACGTATTTAATGTTCCTAAAACATGTATCAACTTACTACTTCTAGCATGATGCTTGAGTATATTCTACCTGTCGCCCAGTGTTTGGT-ATTTTTT-ATAAGTTTTTTTT--CCTTGTCGTTAAATCTTTATCGTTTCGGGTTATT-TTACGCGAAAAAGTTTGTGATGGC-GTGCCG-CA--GCGAGCAAAAA-TT--AA---AAAATAAGTTGAATAGC---TTTTTTACAAGTAGATCATCATCTGCAGAAA-G---TCAAACG---CAG------AAGAAAATGTA-GTATATTTGCATGTCATGACA-TGTGTAAATAA---TTTTAGATG------GACCAGTCTGCT-A---AAAC--ATGTATACAATTA-A--GATATCTACACTATGT---------------------AAAAGCACCGAGACAGGAAGAACCAAACTGGTGGACAAATTGACGCAAACAAATAATCAATACAACACTGAAATCTACG------ATTCATCTATTTCCATTCAATGTTA----TA-TT---AAATAAAGATTTAGCCAGAAAAAA--CAATATGCCATCGGCCTGCCCCTAACATGAGAGTGATGTGCTATGATTGTGTGAA--TAAATG-TTCAAT-TCTA--AGTGGTACTTTAGCGTAATAGG--TAAGGCGTGCGC--CTGTTAATCTAGAGGTCTATCGTTCGAGCCTGCCTAGCGGCA------------TTT-T--TT-TGTAAAT-AAAACATTTAT-A-A---A-A-AA--ACAAGGTATTCGTG---------TTATTATTTGTATCTTTATTTAAAAGAATTAAGTTATAAATA--TATATACACTCACTAAAATAT-AT--------CC-CCCCA------------------CCACACCCC-------TAAC------AT-CCATTCCTGGATTCGCACCTtggtaataatacagtgacgtcagcgtac
gi|20 : tagaatattgccatcaaggacgtattcaggcgggcgggcacccgcacccccccccccccccctccctctaaaaACAA-AT-GCGATGTGCTATAATTTAGT--G--TAA--G-ACTAAT-TCTA--AGTGGTGCTGTAGCGTAATAGG--TAAGGCCTGCGC--CTGTCAATCTAGAGGTCTAACGTTCGAACCTGCCTAGTGACA--T--------TTTT-T--TT-TGTAA-----------------------------TCAAGGTATACATG---------TTATTATGTTTATCTTTATTTAAAAGAATTA
gi|21 : CGATTTGTGT--TAAAACAAATTAAGCACGTTTTTGATGTACCTAAA-TATGTTCAAACTTACTACTTCTAGCATGATGCTTGAGTATATTCTA-CTTACGCCCAACGTTTGGTCTTTTTTT-A----------------TTATCGTTAAACC
gi|23 : tctatCTTAACGACA--T--------TTTT-TCTTT-TGTAAATAAAAATGTTTTT-A-A---A-A-AA-ATCAAGGTATTCGTA---------TTATTATTTTTATCATTA
gi|24 : aggtggggcgcacCTTAACGACA--T--------TTTT-TCTTT-TGTAAATAAAAATGTTTTT-A-A---A-A-AA-ATCAAGGTATTCGTA---------TTATTATTTTTATCATTA
gi|26 : ggtggggcgcacGCAT-GGTTTTTCTTCTACACATTTACCCTGAACTCAAGTa
gi|27 : AC------ATTCAATTCCTGGACCCGCACC
gi|3 : atgtatatTTTGGCAAGCATAGGTTTTTCTTCTACACATTTACTCTGAACTCAAGTAACCATCTAAACCATTTGTGT--CAAA-CAAATTAAGCACATATTTAATGTACCTAAACTATGTACAAACGTACTACTTCTAGCATGATGCTTGAGTATATTCT----GTCGCCCAGTGTTT---------TT-A-A-G-TTTTTTT--TCTTGTCGTTAAATCTTTATCGTTTCGGGTAATT-TTACGCGAAAAAGTTTGCTATGGCGGCACCATCAACGCGAGCAAAAA-TT-AAA---AAAA-----------GCTT--------CATGTAGAACATCATTTGCAGAAA-G---TCAAACG---CAG------AAGAAAATGTATGTATATTTGCATGTCATGACA-TGTGTAAATGA---TTTTAAATG------GACCAGTCTGCT-A---AAAC--ATGTATAATATTA-A--AATATCTACACTGCGTAGACCAAACTT--------TCAAAAGCACCGAG--------------ACTGGTGGACAAACTGAGGCAAATAAATAATCAATACAACACTGAAATCTATG------TTTCATCTATTTTCATTCAATGTTATCAGTA-TTTAAAAAAAAA----TAGCCAG-AAAAA--CAATATGCCATCTGCCAGCTCCTAACAAGATAATGATGTGCTATGATTGTGT--C--TAA--G-ACTAAT-TCAA--AGTGGTGCTGTAGCGTAATAGG--CAATGCGTGTGCGGTCGTCAATCTATAGGTCTAACGTTCAAGCCTGCCTAGCAACA--T--------TTTT-T--TT-TGTAAATAAAAATGTTTAT-A-A---A-A-AA-TTCAAGGTATGCGTG---------TTATTATGTTTATCTTTATTTAAAAGAATTAAGTTATAAATG--TATATACATTCACTTAAGTAT-ATTTG-----CCGCCACA-------------------CCCACCCC-------TAAC------AT-CAATTTCTGGATCCGCAC
gi|4 : tcaagggcggattcagggtgccccaacatcccctaaaaAACGATTTGTGT--TAAAACAAATTAAGCACGTATTTGATGTACCTAAAGTATGTACAAACATACTACTTCTAGCATGATGCTTGAGTATATTCTA-CTGTCTTTCAGTGTTTGGTCGTTTTTT-A-AAG-TTTTTTTTTCCTTGTCGTTAAATCTTTACCGTTTCGGGTAATT-TTACGCGAAAAAGTTTGTTATGGTGGCACCATCAACGCGAGCAAAAA-TT--TG---AAAAAAAGCTGAATAAC--TTTTTTTACATGTATATCATCATCTGCAGAAA-G---TCAAACG---CAG------AAGAAAATGTATGTATATTTGTATGTCATGACA-TGTGTAAATGA---TTTTAAATG------GACCAGTCTGCT-A---AAAC--ATGTATACAATTA-A--AATATCTACACGGAGTAGACCAAACTT--------TCAATAGCACCGAGACAGAAAGAATCAAA------GACAAACTGAGGCTTACACATTATCAATACAACATTGAAATCTATA------TTTCATCTATTTTCATTCAATGTTA----TA-TT--AAAAAAAAGATTTAGTCAG-AAAAA--CAATATGCCATCGGCCTGCTCCTAACAAGAAAGTGACGTGCTATGATTGTGT--C--TAA--G-ACTAAT-TCTA--AGTGGTGCTGTAGTGTAACAGG--TATGACGTGCAC--CTGTCAATCTAGAGGTCTAACGTTCGAGTCTGCCTAGCGACA--T--------TTTT-T--TT-TATAAATAAAAATGTTTAT-C-G---ATA-AA-TTCAAGGTATACCTA---------TTATAATGTTTATCTTTATTTAAAAGAATTAAGTTATAAATG--TTTTTACATTCACTTAAGTAT-ATTTGCAGCCCCCCCCCC-------C-----CC---CCCCACCCCAACCCTTTTAC------TT-CAATTCCTGTATCCGCATCTGCG-CACCCCTTCTAAACTGAAATCGTGCATCCGCTCCT
gi|5 : ACTCAAGTAAGCATCTTAACGATTTGTGT--TAAAACAAATTAAGCACGTATTTGATGTACCTAAAATATGTACAAACTTATTACTCCTA------------------------CTGTCGCCAAGTGTTTGGTCGATTTTT----------TTCC--CCTTATCGTTAAATCTTTATCGTTTCGGGTAATT-TTACGCGAAAAAGTTTGTTATAGCGGCACTATCAACACGAACAAAAAGTC-AAACGCAGAAGAAAATGTATG----TATATTTGCAT----ATCATGATATGTGTAAATGATTTTAAATGGATCAGTCTGCTAA-AACATGTATACA-ATTAAAATATC-T-ACACTGCGTAGACCAAACCTTCAAAAGCATCAAGACCAAACTGGT-GGACAAACTGAGGCAAACAATTA-ATGAATA-CAACACTG
gi|5 : CAAAAA-G---TCAAACG---CAG------AAGAAAATGTATGTATATTTGCATATCATGATA-TGTGTAAATGA---TTTTAAATG------GATCAGTCTGCT-A---AAAC--ATGTATACAATTA-A--AATATCTACACTGCGTAGACCAAACCT--------TCAAAAGCATCAAGAC---------CAAACTGGTGGACAAACTGAGGCAAACAATTAATGAATACAACACTGAAATCTATG------TTTCATCTATTTACATTCAATGCTA----TATTTAAAAAAAAAAGATTTAGCAAGAAAAAA--CAATATGCCATCGGCCTGCTCCTAACAAGATACTGATGGCCTATGATTGTGT--C--TAA--G-ACTAAT-TCTT--AGTGGTGCTGTAGCGTAATATG--TTAGGCGTGCGC--CTGTCAATCTAGACGTCTGACGTTCGAGACTGCCTAACGACA--TTATTTTTATTTT-T--TT-TG-AAATAAAAAAAATTAT-ACA---A-A-AA-TTCAAGTTATACGTGTTATTACGTTTATTATGTTTATTTTTATTTGAAAGAATTAAGTTATAAATG--TATTTACATTCACTTAAGTAT-ATTTG-----TCG-------------------C---CCCCATCCC-------TAAC------AT-CAGTTCCTGGATCTGCGCCTGCG-CGCCCCCTCTAATCTGAAATCCTGGATCCACACCTaaatctatgtttcatctatttacattcaatgctatatttaaaaaaaaaagatttagcaagaaaaaacaatatgccatcggcctgctcctaacaagatactgatggcctatgattgtgtctaagactaattcttagtggtgctgtagcgtaatatgttaggcgtgcgcctgtcaatctagacgtctgacgttcgagactgcctaacgacattatttttattttttttgaaataaaaaaaattatacaaaaattcaagttatacgtgttattacgtttattatgtttatttttatttgaaagaattaagttataaatgtatttacattcacttaagtatatttgtcgcccccatccctaacatcagttcctggatctgcgcctgcgcgccccctctaatctgaaatcctggatccacacct
gi|6 : actcaagtaagcatcttaacgatttgtgttaaaacaaattaagcacgtatttgatgtacctaaaatatgtacaaacttattactcctactgtcgccaagtgtttggtcgatttttttccccttatcgttaaatctttatcgtttcgggtaattttacgcgaaaaagtttgttatagcggcactatcaacacgaaTTTGGCAAGCATAAGTTTTTCTTCTACACATTTACTCTGAACTAAAGTTACTATCAAAACGAATTGTGT--TGAAACACATTAAGCACGTATTTAAAGTACCTAAAATATGTATAAACTTACTACTTCTAGCATGATGCTTCAGTATATTCTA-CTGTAGCCCAGTGTTTGGTCCTTTTTT---AAG-TTTT
gi|6 : taagatgaacgtgttcttgagtttctaatcagtactgtactgctattgcgcttcattgtattttttctagactatagataaaacttaaaggcggattcaggggttaccccatcccccaaacaACCACCAAATCGAGCAATAA-TT-GAA---AAAAA--GCTGAATAGCTTTTTT---ACAAGTAGATCGTCATCTGCAGAAA-G---TCAAACG---CAG------AGGAAAATGTATGTATATTTGCATGTCATGACA-TGTGTAAATGA---TTTTAAATG------GACCAGTCTGCT-A---AAAC--ATGTATACAATTA-A--AATATCTACACTGCGTATGCCAAACCT--------TCAAAAGCACCGAGACAAAAAGAATCAAACTGGTGGAGAAACTGAGGCAAACAAATAATCAGTACAACACTGAAATCTATGTT----TT--ATCTATTTTCATTCAATGTTA----TA-TT----AAAAAAGATTTAGCCAG-TAAAA--CAATATGCCATTAGCCTGCTCCTAACAAGAGAGTGATGTGaccaccaaatcgagcaataattgaaaaaaagctgaatagcttttttacaagtagatcgtcatctgcagaaagtcaaacgcagaggaaaatgtatgtatatttgcatgtcatgacatgtgtaaatgattttaaatggaccagtctgctaaaacatgtatacaattaaaatatctacactgcgtatgccaaaccttcaaaagcaccgagacaaaaagaatcaaactggtggagaaactgaggcaaacaaataatcagtacaacactgaaatctatgttttatctattttcattcaatgttatattaaaaaagatttagccagtaaaacaatatgccattagcctgctcctaacaagagagtgatgtg
gi|7 : taagatgaacgtgttcttgagtttctaatcagtactgtactgctattgcgcttcattgtattttttctagactatagataaaacttaaaggcggattcaggggttaccccatcccccaaacatttggcaagcataagtttttcttctacacatttactctgaactaaagttactatcaaaacgaattgtgttgaaacacattaagcacgtatttaaagtacctaaaatatgtataaacttactacttctagcatgatgcttcagtatattctactgtagcccagtgtttggtccttttttaagttttATTATTACGCGAAAAAATTTGTTATGGCGGC
gi|7 : TGAATAGCTTTTTTT--ACATGTAGATCATCTTCTGCAGAAA-G---TCAAACG---CAG------AAGAAAATGTATGTATATTTGCATGTCATGATA-TGAGTAAATAA---TTTTAAATG------GACCAGTCTGCT-A---AAAC--ATGTATACAATTA-A--AATATCCACACTGCGTAGACCAAACTTCCAAACTTTCAAAAGCACCGAGACAGAAACAACCAAACTGGTGGACAAACTGAGGCAAACAAATAATCAATACAACACTGAAATCTATATT----T--CATCTATTTTCATTCA-------------------------------GCCAG-AAAAA--CAATATGCCATCGGCCTGCTCCTAACAAGATAGTGCTGTGCTATGATTGTGT--T--TAA--G-ACTAAT-TCTA--AGTGGTGCTGAAGCGTAATAGG--TAAGGCGTGCGC--CTGTCAATCTAGAGGTCTAATGTTCGAGCCTGCCTAGCGCCATTT--------TTTT-T--TT-TGTAAATAATAATGTTTATAA-A---A-A-AA-TTCAAGGTATACGTG---------TTATTATGTTTATCTTTATTTCAAAAAATTAAGTTATAAATGTATATATACATTCACTTAAGTAT-ATTTG-----CCGCCGCA-------C-----CCCCGCCCCTCTCC-------CAACCCCCCTAT-CAGTTCCTGGATCTGCACCTGCA-TGCCCCCTCTAAACTGAAATCCTGGGTCCTCCCCTtttgaatagctttttttacatgtagatcatcttctgcagaaagtcaaacgcagaagaaaatgtatgtatatttgcatgtcatgatatgagtaaataattttaaatggaccagtctgctaaaacatgtatacaattaaaatatccacactgcgtagaccaaacttccaaactttcaaaagcaccgagacagaaacaaccaaactggtggacaaactgaggcaaacaaataatcaatacaacactgaaatctatatttcatctattttcattcagccagaaaaacaatatgccatcggcctgctcctaacaagatagtgctgtgctatgattgtgtttaagactaattctaagtggtgctgaagcgtaataggtaaggcgtgcgcctgtcaatctagaggtctaatgttcgagcctgcctagcgccatttttttttttgtaaataataatgtttataaaaaaattcaaggtatacgtgttattatgtttatctttatttcaaaaaattaagttataaatgtatatatacattcacttaagtatatttgccgccgcacccccgcccctctcccaacccccctatcagttcctggatctgcacctgcatgccccctctaaactgaaatcctgggtcctcccctc
gi|8 : attattacgcgaaaaaatttgttatggcggcttTTTGGCAAGCATAGGTTTTTCTTCTACACATTTACCCTGAACTCAAGTAACCATCTGAAAGAGTTGTGT--TAAAACAAATTAAGCACGTATTTGATGTACCTTAAATATGTACAAACT-GCTACTTCTATCATGATGCTTGAGTATATTCTA-ATGTCGCCCAGTGTTTGGTCGTTTTTT-A-A-G-TTTTTTT--CCTTGTCGTTAAATCTTAATCGTTTCGGGTAATT-TT-CACGAAAAAGTTTGTTATGGCGGCACCATCAACACGAGCAAAAA-TT-GAA---AAAAA--GCTGAATAGCTTTTTTT--ACATATAGATCATCATCTGCAGAAA-G---TCAAACG---CAG------AAGAAAATGTATGTATATTTGCATGTCATGACA-TGTGT----GA---TTTAAAATT------GACCAGTCTGCT-A---AAAC--ATGTATACAATTA-A--AATATCCACACTGCGCAGACCAAACCT--------TCAAAAGCACAGAGACAGAAACAACCAAACTGGTGGACAAACTGAGGCAAACAAATAATCAATACAACACTGAAATCTATG------TTTCATCTATTTTCATTCAATGTTA----TA-TT---AAAAAAAGATTTAGCCAG-AAAAA--CAATATGCCATCAGCCTGCTCCTAACAAGATAGTGATGTGCTATGATTGTGT--C--TAA--G-ACTAAT-TCTA--AGTGGTACTc
gi|9 : ggcgcaccccccccccccttaaaaACTTCTAGCATGATGCTTGAGTATATTCTA-CTGTCGCCCAGTGTTTGGTC-TTTTTT-A-A-G-TTTTTTT--CCTTGTCGTTAAATCGTTATC-TTTCGGGTAATT-TTACGCGTAAAAGATTGTTGTGGCGGCACCATCAACGCGAGCAAAAT-TT-TAA---AAAAAA-TCTGAATAGCTTTTTTATTACATGTAGATCATCATCTGCAGAAA-G---TCAAACG---CAG------AAGAAAATGTATGTATATTTGCATGTCATGACA-TGTGCAAATAA---TTTTAAATG------GACCAGTCTGCTAA---AAAC--ATGTATACAATTA-A--AATATCAACACTGCATAGACCAAACCT--------TCAAAAGCACCGAGACAGAAACAACCAAACTGGTGGATAAACTGAGGCAAACAAATAATAAATACAGCAATGAAATCTATG------TTTCATTTATTTTCATTCAATGTTA----TA-TT--AAAAAAAATGTTTAGCCAG-AAAAA--CAATATGCCATCGGCCTGCTCCTAACAAGATAGTCATGTGCAATGATTGTGT--C--TAC--G-TCTAAT-TCTAAGAGTGGTGCTGTAGCGTAATAGG--TAAGGCGTGTGC--CTG-----CT---------------GAGCC---------ACAT-T--------TTTT-T--TT-TGTAAATAAAAATGTTTAT-A-A---A-ACAA-TTCAATGGATACA------------TATTATGTTTATCTTTATTTAAAAGAATTAAGTTATAAATG--TATAT
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|22 ): GTTCTTGAGTTTCTTATCAATACTGCTCTGCTCATGCGCTTTATGGTATTTTATTTCTAGACTATATATATAAAGCAAGGGTGGATTCAGGGGGGT
Unaligned ( gi|25 ): TTTAGAGGTTATTCAGATACCTAAACCCAGGCTTAACTAAA
Alignments
lowQualScore : 22222 11 111 11111111 333333 11 11111111111 11 111111111 11111111 333333333333333333 2222222 111111 1
lowQualScore : 44 3 3 33333 3 55 3 3 55 666 66 111 999 3 555 555 888888 3 555 999999 3 555 44 3 44 22222222 3 111111 44 6666 3 99 5 33 2 99999 77 33 5 33 33 33 11111111111 2 00 2 7 2 666 2 2 33 1 111111111 0 55 2 4 44444444 2 999999999999999999 0000000 111111 4 0 0 0 0
lowQualScore : .. . . ..... . .. . . .. ... .. ... ... . ... ... ...... . ... ...... . ... .. . .. ........ . ...... .. .... . .. . .. . ..... .. .. . .. .. .. ........... . .. . . . ... . . .. . ......... . .. . . ........ . .................. ....... ...... . . . . .
lowQualScore : 66 3 8 77777 3 00 6 6 55 444 33 444 555 1 444 444 888888 1 444 666666 3 888 22 1 22 11111111 5 111111 55 5555 1 55 7 99 4 11111 99 33 7 99 99 99 66666666666 5 33 5 5 5 999 5 5 66 0 444444444 7 00 2 4 22222222 6 111111111111111111 6666666 555555 0 0 2 2 2
consensus : TTTGGCAAGCATAGGTTTTTCTTCTACACATTTACTCTGAACTCAAGTAACCATCTAAACGATTTGTGT--TAAAACAAATTAAGCACGTATTTGATGTACCTAAAATATGTACAAACTTACTACTTCTAGCATGATGCTTGAGTATATTCTA-CTGTCGCCCAGTGTTTGGTCGTTTTTT-A-AAG-TTTTTTT--CCTTGTCGTTAAATCTTTATCGTTTCGGGTAATT-TTACGCGAAAAAGTTTGTTATGGCGGCACCATCAACGCGAGCAAAAA-TT-AAA---AAAAAAAGCTGAATAGCTTTTTTTTTACATGTAGATCATCATCTGCAGAAA-G---TCAAACG---CAG------AAGAAAATGTATGTATATTTGCATGTCATGACA-TGTGTAAATGA---TTTTAAATG------GACCAGTCTGCT-A---AAAC--ATGTATACAATTA-A--AATATCTACACTGCGTAGACCAAACTT--------TCAAAAGCACCGAGACAGAAACAACCAAACTGGTGGACAAACTGAGGCAAACAAATAATCAATACAACACTGAAATCTATGTT----TTTCATCTATTTTCATTCAATGTTA----TA-TTAAAAAAAAAAGATTTAGCCAG-AAAAA--CAATATGCCATCGGCCTGCTCCTAACAAGATAGTGATGTGCTATGATTGTGT--C--TAA--G-ACTAAT-TCTA--AGTGGTGCTGTAGCGTAATAGG--TAAGGCGTGCGC--CTGTCAATCTAGAGGTCTAACGTTCGAGCCTGCCTAGCGACA--T--------TTTT-T--TT-TGTAAATAAAAATGTTTAT-A-A---A-A-AA-TTCAAGGTATNCGTG---------TTATTATGTTTATCTTTATTTAAAAGAATTAAGTTATAAATG--TATATACATTCACTTAAGTAT-ATTTG-----CCGCCNCA-------C-----CC---CCCCACCCC-------TAAC------AT-CAATTCCTGGATCCGCACCTGCG-CGCCCCCTCTAAACTGAAATCCTGGATCCGCCCCT
Reference ( family-2158 ) : TTTGGCAAGCATAGGTTTTTCTTCTACACATTTACTCTGAACTCAAGTAACCATCTAAACGATTTGTGT--TAAAACAAATTAAGCACGTATTTGATGTACCTAAAATATGTACAAACTTACTACTTCTAGCATGATGCTTGAGTATATTCTA-CTGTCGCCCAGTGTTTGGTCGTTTTTT-A-AAG-TTTTTTT--CCTTGTCGTTAAATCTTTATCGTTTCGGGTAATT-TTACGCGAAAAAGTTTGTTATGGCGGCACCATCAACGCGAGCAAAAA-TT-AAA---AAAAAAAGCTGAATAGCTTTTTTTTTACATGTAGATCATCATCTGCAGAAA-G---TCAAACG---CAG------AAGAAAATGTATGTATATTTGCATGTCATGACA-TGTGTAAATGA---TTTTAAATG------GACCAGTCTGCT-A---AAAC--ATGTATACAATTA-A--AATATCTACACTGCGTAGACCAAACTT--------TCAAAAGCACCGAGACAGAAACAACCAAACTGGTGGACAAACTGAGGCAAACAAATAATCAATACAACACTGAAATCTATGTT----TTTCATCTATTTTCATTCAATGTTA----TA-TTAAAAAAAAAAGATTTAGCCAG-AAAAA--CAATATGCCATCGGCCTGCTCCTAACAAGATAGTGATGTGCTATGATTGTGT--C--TAA--G-ACTAAT-TCTA--AGTGGTGCTGTAGCGTAATAGG--TAAGGCGTGCGC--CTGTCAATCTAGAGGTCTAACGTTCGAGCCTGCCTAGCGACA--T--------TTTT-T--TT-TGTAAATAAAAATGTTTAT-A-A---A-A-AA-TTCAAGGTATNCGTG---------TTATTATGTTTATCTTTATTTAAAAGAATTAAGTTATAAATG--TATATACATTCACTTAAGTAT-ATTTG-----CCGCCNCA-------C-----CC---CCCCACCCC-------TAAC------AT-CAATTCCTGGATCCGCACCTGCG-CGCCCCCTCTAAACTGAAATCCTGGATCCGCCCCT
gi|1 : TTTGGTAAGCATAGGTTTT-CTTCTACACATTCACCCTGAACTCAAGTAACCATCTAAACGATTTGTGT--TAAAACAAATTAAGCACATATTTGATGTACCTAAAATATGTACAAACTTACTACTTCTAGCATGATGCTTGAGTATATTCTA-CTGTCGCCCAGTGTTTGGTCGTTTTTT-A-AAG-TTTTTTT--CCTTGTCGTTAGATCTATATCGTTTCTGGTAATT-TTACGCAAAAAAGTTTGTTATGGCGGCACCATCAACGCGAGCAAAAA-TTAAAA---AAAAAAAGCTGAATAGCTTTTTTTTTACATATAGATCTTCATCTGCAGAAA-A---TCAAACG---CAG------AAGAAAATGTATGTATATTTGCATGTCATGAC---GTGTAAATGA---TTTTAAATA------GACCAGTCTGCT-A---AAAC--ATGTATACAATTA-A--AATATCTACACTGCGTAGACCAAACTT--------TCAAAAGCACCGATACAGAAACAACCAAACTGGTAGACAAACTGAGGCAAACAAATAATCAATACATCACTGAAATCTATGTTAAACTTTCATCTATTTTCATTCAATGTTA----TA-TTAAAAAAAAAAGATTTAGCCAG-AAAAA--CAATATGCCATCGGCCTGCTCCTAACAAGATAGTGATGTGCTATGATTGTGT--C--TAA--T-GCAAAT-CTAA--AGTGGTGCAGTAGCGTAATAGG--TAAAGCGTGCGC--CTGTCAATCTAGAGGTTTAACGTTCGAGCCTCCCTAGCGACA--T--------TTTT-T--TT-TGTTAATAAATACGTTTAT-A-AC--A-A-AA-ATCAAGGTATACGTG---------TTATTATGTTTACCTTTATTCAAAAGAATTAAGTTATAAATA--TATATACATTCACTTAAGTATAATTTG-----ACGCCACA-------TA----CC---CCCCAACCC-------TAAC------AT-TAATTCCTGGATCTGCACATGCGCCCCCCCCTCTAAACTGAAATACTTGATCCGCCCCT
gi|10 : GCATGATGTTTGAGTATATTATA-TTGTCGCCCAGTGTTTGGTCGTTTTTT-------------T--CTTTGTTGTTAAATCTATATCGT-------AATT-TTACGCGAAACAGTTTGTTATGGCGGCACCATCAACGCGAGTAAAAA-TT-AAA---AAAAACAGCTGAATAGCTTTTTT---ACATGTAGATCATC---------------------TG---CAG------AAGAAAATCTATGTATATGGG-ATGTCATGACA-TGTGTAAATTA---TTTTAAATA------GGCCAGTCTGCT-A---AAAC--ATGTATACAATTA-A--AATATCTACACTGCCTAGACCAAACTT--------TCAAAAGCACCGAGACAGAAACAACCAAACTGGTTGACAAACTGAGGTAAACAAAAAATCAATACAACACTGAAATCTATG---------------TTTTCATTCAATGTTA----TA-TT-AAAAAAAAAGATTCAGCTAG--AAAA--CAATATGCCATCGGCCTGCTCCTAACAAGA-------------------TGT--T--TAA--T-AC-AAT-TTTA--AATGGTGCAGTAGCGTAATAGG--TAAGGCGTGCGA--CTGTCAATCTAAAGGTCTAACGTTCGAGCCTTCCTAGCGATA--T--------TTTT-T--TTGTGTAAATAAAAATGTTTAT-A-AAAGA-A-AA-TTCAAGGTAT
gi|11 : TTTGGCAAGCATAGGTTTTTCTTCTACACATTTACTCTGAACTCAAGTAACCATCTAAACGATTTGTGT--TAAAACAAATTAAGCACGTATTTAATGTACCTAAAACATGTATAAATTTCCTACTTATAGCATGATGCTTGAGTATATTCTA-CTGTCGCCCGGTGTTTGGTCTTTTTTT-T-CAG-GTTTTTT--CCTTGTCGTTAAATCTTTATCGTTTCGGGTAATT-TTACGCAAAAAAGTTTGTGATGGCGGCACCATCAAAGCGAGC-AAAA-TT-TAA---AAAAAAAGTTGAGTAGC---TTTTTTACAAGTAGATCATCATCTGCAGAAA-G---ACAAACG---CAG------AAGAAAATGTATGTATATTTGCATGTCATGACA-TGTGTGAATGA---TTTTAAATG------GACCAGTCCGCT-A---AAAC--ATGTATACAATTA-A--AATATCTACACTGCGT---------------------AAAAGCACCGAGACAAAAAGAACCAAAATGG-GGACAAACCAAG
gi|12 : aaaaGGCAAGCATAGGTTTTTCTTCTACACATTTACCCTGAACTCGAGTAACCATCTAAACGATATGTGT--TAAAACAAATTAAGCACGTATTTGATGTACCTAAAATATGTACAAACTTACTACTTCTAGCATGATGCTTGAG----------------CCCAGTGTTTGGTCGTTTTTTTA-AGG-TTTTTTT--CCTTGTCGTTAAATCTTTATCGTTTCGGGTAATT-TTACGCGAAAAAGTTTGTAATGGCGGCACCATCAACGCGATCAAAAT-TT--------AACAAAGCTGAATAGC---TTTTTTACATGAAG---ATCATCTGCAGAAA-G---TCAAACG---CAG------AAGAAAATGTATGTATATTTGCATGTCATGAC---GTGTAAATGA---TTTTAAAT
gi|12 : AC--GTGTAAATGATTTTA--AATATCTACACTACGTAGACCAAACTT--------TCAAAAGCACCGAGACAGAAACAACCAAACCGGTGGACAAACTGAAGCAAACAAAatctacactacgtagaccaaactttcaaaagcaccgagacagaaacaaccaaaccggtggacaaactgaagcaaacaaa
gi|13 : ggcaagcataggtttttcttctacacatttaccctgaactcgagtaaccatctaaacgatatgtgttaaaacaaattaagcacgtatttgatgtacctaaaatatgtacaaacttactacttctagcatgatgcttgagcccagtgtttggtcgtttttttaaggtttttttccttgtcgttaaatctttatcgtttcgggtaattttacgcgaaaaagtttgtaatggcggcaccatcaacgcgatcaaaatttaacaaagctgaatagcttttttacatgaagatcatctgcagaaagtcaaacgcagaagaaaatgtatgtatatttgcatgtcatgAGACAAAAAGAACCTAACTGGTGGACAAACTGAGGCAAACAAATAATCAATACCACACTGAAATCTATGTT----TT--ATCTATTTTCGTTCAATGTAA----TA-TTAAAAAAA---GATTTAGCCAG-TAAAA--CAATATGCTATCAGCCTGCTCCTAACAAGAGAGTGATGTGCTATGATTGTGA--A--TAAATG-CTTAATGTCTA--AGTGGCGCTGTAGCGTAATAGG--TAAGGCGTGTGC--ATGTCAATCCAGAGGTCTAACGTTCGAGCCTGCCTAGCGACA--T--------TTTTCT--TT-TGAAAATAAAAATGTGTAT-A-A---A-A-AAGTTAAATGTATTTGGG---------TAACTATTTTCATCTTTATTTTAAAGAATTAAGTTATAAATG--TATATACATTCAAT------T-CCTTG-----AT-CCGCA-------CCTGTGCT---CCCCGCCCCCT-----TAAC-------T-GAAATCCTGGATCCG
gi|14 : AAACTGGTGGACAAACTGAGGCAAACAAATAATCAATACAACACTGAAATCTTTGTT----T--CATCTATTTTCATTCAAAGTTA----TA-TTAAAAAAAAACGATTTAGCCAG-AAAAA--CAATATGCCATCGACCTGCTCCTAACAAGATAGTGATGTGCTATGATTGTGT--C--TTA--G-TCTAAT-TCTA--AGTAGTGATGTAGTGTAATAGG--TAAAGCATACGC--CTGTCAATCTAAAGGTCTAACATTTGAGCCTGCCTAGCGGTAT-T--------TTTT-T--TT-TGTAAATAAAAATTTTTATAA-A---A-A-AA-TTCAAGGTTTACGTG---------TTATTATGTTTAGCTTTA-TTAAAATAATTAAGTGATAAATG--TATATA---TCACTTAAGTAT-ATTTG-----CTGCCCTACCCCCACC-----CC---CCCCACCCC-------TAAC------AT-CAATTCCTGGATCCACAtc
gi|15 : AAAAAAAGATTTAGCCAG-AAAAAAACAATATGCCATCGTCCTGCTCCTAACAAGAGAATGATGTGCTATGATTGTGT--GAATAA--ATGCTCGTGTCTA--AGTGGTAATTTAGCG-AATAGG--TAAGGCCTGCGC--CTGTCAATCTAGAGGTCTATCGTTCGAGCCTGCCTAGCGACA--T--------TTTT-T--TT-TGTAAATAAAAATGTTTATAA-A---A-A-AA-TTCAAGGTATTTGTG---------TTATTATTTTTATCTTTATTTAAAAGAATTAAGTTATAAATG--TATATACATTCACTAAAATAT-ATT----------CCCCC-------C-----CC---CCCCCCTTC-------TAAC------AT-CCATTCCTGGAATCGCACCac
gi|16 : t----TTTCATCTATTTTCATTCAATGTTA----TA-TTAAAA-AAAAAGATTTAGCCAG-AAAAA--CAATATGCCATCGGCCTGCTCCTAACAAGATAGTGATGTGCTATGATTTTGT--A--TAA--A-ACTAAT-TCTA--AGTGGTGCTGTAGCGTAATAGG--TAGGGTGTGTGC--CTGTCAATCTAGAGGTCTAACGTTCGAGCTTGCCTAACAACA--T--------TTGT-T--TT-TGTAAATAAAAATATTTAT-T-A---A-A-AA-
gi|17 : aattaaagttacaaaaaaaataTTGGCAAACATAGGTTTTT-TTCTACACATTTACTCTAAACTCAAGTTACCATCTAAACGAATTATGTTATAAAACAAATTAAGCACGTATTTAAAGTACC
gi|18 : ttgttgagtttctaatcagtactgttctgctcttgcgcttatggtattttatttatagactatagatataaagcaagggcagattcaggggggtacccccccccaaaaaaaaaaataaataataataataaataaataaaaaaaataaaaaaTTGGCAAGCATAGGTTTTTCTTCTACACATATACTCTGAACTCAAGTTACCATTTAAACGAATTGTGT--TAAAACAAATTAAGCACATACTTAAAGTA
gi|19 : tgttgagtttctaatcagtactgtactgctcttgcgcttatggtatttaatttatagactatagatataaagcaagagcagattcaggtgggaacccccacaccccgcacccccaccccccaaaaatattaaaaataaaaataaaaaaGCTGATGTGAAACAGGCTTAAGGCGTGCGC--GTGTTAATCTAGAGGCCTAACGTTCGAGGCTGCCTAGCGACA--T--------TTTT-TTCTT-TGTAAAT---------------A---A-A-AC-TTCAAGGTATTCGCG---------TTATCATTTTTATCTTTATTTAAAAGAATTAAGTTATAAATG--CATATAGATTCA
gi|2 : TTTGGCAAGCATAAGTTTTCCTTCTACACATTTACTCTGAACTCAAGTAACCACATAAACGATTTGTGT--TAAAACAAAATAAGCACGTATTTAATGTTCCTAAAACATGTATCAACTTACTACTTCTAGCATGATGCTTGAGTATATTCTACCTGTCGCCCAGTGTTTGGT-ATTTTTT-ATAAGTTTTTTTT--CCTTGTCGTTAAATCTTTATCGTTTCGGGTTATT-TTACGCGAAAAAGTTTGTGATGGC-GTGCCG-CA--GCGAGCAAAAA-TT--AA---AAAATAAGTTGAATAGC---TTTTTTACAAGTAGATCATCATCTGCAGAAA-G---TCAAACG---CAG------AAGAAAATGTA-GTATATTTGCATGTCATGACA-TGTGTAAATAA---TTTTAGATG------GACCAGTCTGCT-A---AAAC--ATGTATACAATTA-A--GATATCTACACTATGT---------------------AAAAGCACCGAGACAGGAAGAACCAAACTGGTGGACAAATTGACGCAAACAAATAATCAATACAACACTGAAATCTACG------ATTCATCTATTTCCATTCAATGTTA----TA-TT---AAATAAAGATTTAGCCAGAAAAAA--CAATATGCCATCGGCCTGCCCCTAACATGAGAGTGATGTGCTATGATTGTGTGAA--TAAATG-TTCAAT-TCTA--AGTGGTACTTTAGCGTAATAGG--TAAGGCGTGCGC--CTGTTAATCTAGAGGTCTATCGTTCGAGCCTGCCTAGCGGCA------------TTT-T--TT-TGTAAAT-AAAACATTTAT-A-A---A-A-AA--ACAAGGTATTCGTG---------TTATTATTTGTATCTTTATTTAAAAGAATTAAGTTATAAATA--TATATACACTCACTAAAATAT-AT--------CC-CCCCA------------------CCACACCCC-------TAAC------AT-CCATTCCTGGATTCGCACCTtggtaataatacagtgacgtcagcgtac
gi|20 : tagaatattgccatcaaggacgtattcaggcgggcgggcacccgcacccccccccccccccctccctctaaaaACAA-AT-GCGATGTGCTATAATTTAGT--G--TAA--G-ACTAAT-TCTA--AGTGGTGCTGTAGCGTAATAGG--TAAGGCCTGCGC--CTGTCAATCTAGAGGTCTAACGTTCGAACCTGCCTAGTGACA--T--------TTTT-T--TT-TGTAA-----------------------------TCAAGGTATACATG---------TTATTATGTTTATCTTTATTTAAAAGAATTA
gi|21 : CGATTTGTGT--TAAAACAAATTAAGCACGTTTTTGATGTACCTAAA-TATGTTCAAACTTACTACTTCTAGCATGATGCTTGAGTATATTCTA-CTTACGCCCAACGTTTGGTCTTTTTTT-A----------------TTATCGTTAAACC
gi|23 : tctatCTTAACGACA--T--------TTTT-TCTTT-TGTAAATAAAAATGTTTTT-A-A---A-A-AA-ATCAAGGTATTCGTA---------TTATTATTTTTATCATTA
gi|24 : aggtggggcgcacCTTAACGACA--T--------TTTT-TCTTT-TGTAAATAAAAATGTTTTT-A-A---A-A-AA-ATCAAGGTATTCGTA---------TTATTATTTTTATCATTA
gi|26 : ggtggggcgcacGCAT-GGTTTTTCTTCTACACATTTACCCTGAACTCAAGTa
gi|27 : AC------ATTCAATTCCTGGACCCGCACC
gi|3 : atgtatatTTTGGCAAGCATAGGTTTTTCTTCTACACATTTACTCTGAACTCAAGTAACCATCTAAACCATTTGTGT--CAAA-CAAATTAAGCACATATTTAATGTACCTAAACTATGTACAAACGTACTACTTCTAGCATGATGCTTGAGTATATTCT----GTCGCCCAGTGTTT---------TT-A-A-G-TTTTTTT--TCTTGTCGTTAAATCTTTATCGTTTCGGGTAATT-TTACGCGAAAAAGTTTGCTATGGCGGCACCATCAACGCGAGCAAAAA-TT-AAA---AAAA-----------GCTT--------CATGTAGAACATCATTTGCAGAAA-G---TCAAACG---CAG------AAGAAAATGTATGTATATTTGCATGTCATGACA-TGTGTAAATGA---TTTTAAATG------GACCAGTCTGCT-A---AAAC--ATGTATAATATTA-A--AATATCTACACTGCGTAGACCAAACTT--------TCAAAAGCACCGAG--------------ACTGGTGGACAAACTGAGGCAAATAAATAATCAATACAACACTGAAATCTATG------TTTCATCTATTTTCATTCAATGTTATCAGTA-TTTAAAAAAAAA----TAGCCAG-AAAAA--CAATATGCCATCTGCCAGCTCCTAACAAGATAATGATGTGCTATGATTGTGT--C--TAA--G-ACTAAT-TCAA--AGTGGTGCTGTAGCGTAATAGG--CAATGCGTGTGCGGTCGTCAATCTATAGGTCTAACGTTCAAGCCTGCCTAGCAACA--T--------TTTT-T--TT-TGTAAATAAAAATGTTTAT-A-A---A-A-AA-TTCAAGGTATGCGTG---------TTATTATGTTTATCTTTATTTAAAAGAATTAAGTTATAAATG--TATATACATTCACTTAAGTAT-ATTTG-----CCGCCACA-------------------CCCACCCC-------TAAC------AT-CAATTTCTGGATCCGCAC
gi|4 : tcaagggcggattcagggtgccccaacatcccctaaaaAACGATTTGTGT--TAAAACAAATTAAGCACGTATTTGATGTACCTAAAGTATGTACAAACATACTACTTCTAGCATGATGCTTGAGTATATTCTA-CTGTCTTTCAGTGTTTGGTCGTTTTTT-A-AAG-TTTTTTTTTCCTTGTCGTTAAATCTTTACCGTTTCGGGTAATT-TTACGCGAAAAAGTTTGTTATGGTGGCACCATCAACGCGAGCAAAAA-TT--TG---AAAAAAAGCTGAATAAC--TTTTTTTACATGTATATCATCATCTGCAGAAA-G---TCAAACG---CAG------AAGAAAATGTATGTATATTTGTATGTCATGACA-TGTGTAAATGA---TTTTAAATG------GACCAGTCTGCT-A---AAAC--ATGTATACAATTA-A--AATATCTACACGGAGTAGACCAAACTT--------TCAATAGCACCGAGACAGAAAGAATCAAA------GACAAACTGAGGCTTACACATTATCAATACAACATTGAAATCTATA------TTTCATCTATTTTCATTCAATGTTA----TA-TT--AAAAAAAAGATTTAGTCAG-AAAAA--CAATATGCCATCGGCCTGCTCCTAACAAGAAAGTGACGTGCTATGATTGTGT--C--TAA--G-ACTAAT-TCTA--AGTGGTGCTGTAGTGTAACAGG--TATGACGTGCAC--CTGTCAATCTAGAGGTCTAACGTTCGAGTCTGCCTAGCGACA--T--------TTTT-T--TT-TATAAATAAAAATGTTTAT-C-G---ATA-AA-TTCAAGGTATACCTA---------TTATAATGTTTATCTTTATTTAAAAGAATTAAGTTATAAATG--TTTTTACATTCACTTAAGTAT-ATTTGCAGCCCCCCCCCC-------C-----CC---CCCCACCCCAACCCTTTTAC------TT-CAATTCCTGTATCCGCATCTGCG-CACCCCTTCTAAACTGAAATCGTGCATCCGCTCCT
gi|5 : ACTCAAGTAAGCATCTTAACGATTTGTGT--TAAAACAAATTAAGCACGTATTTGATGTACCTAAAATATGTACAAACTTATTACTCCTA------------------------CTGTCGCCAAGTGTTTGGTCGATTTTT----------TTCC--CCTTATCGTTAAATCTTTATCGTTTCGGGTAATT-TTACGCGAAAAAGTTTGTTATAGCGGCACTATCAACACGAACAAAAAGTC-AAACGCAGAAGAAAATGTATG----TATATTTGCAT----ATCATGATATGTGTAAATGATTTTAAATGGATCAGTCTGCTAA-AACATGTATACA-ATTAAAATATC-T-ACACTGCGTAGACCAAACCTTCAAAAGCATCAAGACCAAACTGGT-GGACAAACTGAGGCAAACAATTA-ATGAATA-CAACACTG
gi|5 : CAAAAA-G---TCAAACG---CAG------AAGAAAATGTATGTATATTTGCATATCATGATA-TGTGTAAATGA---TTTTAAATG------GATCAGTCTGCT-A---AAAC--ATGTATACAATTA-A--AATATCTACACTGCGTAGACCAAACCT--------TCAAAAGCATCAAGAC---------CAAACTGGTGGACAAACTGAGGCAAACAATTAATGAATACAACACTGAAATCTATG------TTTCATCTATTTACATTCAATGCTA----TATTTAAAAAAAAAAGATTTAGCAAGAAAAAA--CAATATGCCATCGGCCTGCTCCTAACAAGATACTGATGGCCTATGATTGTGT--C--TAA--G-ACTAAT-TCTT--AGTGGTGCTGTAGCGTAATATG--TTAGGCGTGCGC--CTGTCAATCTAGACGTCTGACGTTCGAGACTGCCTAACGACA--TTATTTTTATTTT-T--TT-TG-AAATAAAAAAAATTAT-ACA---A-A-AA-TTCAAGTTATACGTGTTATTACGTTTATTATGTTTATTTTTATTTGAAAGAATTAAGTTATAAATG--TATTTACATTCACTTAAGTAT-ATTTG-----TCG-------------------C---CCCCATCCC-------TAAC------AT-CAGTTCCTGGATCTGCGCCTGCG-CGCCCCCTCTAATCTGAAATCCTGGATCCACACCTaaatctatgtttcatctatttacattcaatgctatatttaaaaaaaaaagatttagcaagaaaaaacaatatgccatcggcctgctcctaacaagatactgatggcctatgattgtgtctaagactaattcttagtggtgctgtagcgtaatatgttaggcgtgcgcctgtcaatctagacgtctgacgttcgagactgcctaacgacattatttttattttttttgaaataaaaaaaattatacaaaaattcaagttatacgtgttattacgtttattatgtttatttttatttgaaagaattaagttataaatgtatttacattcacttaagtatatttgtcgcccccatccctaacatcagttcctggatctgcgcctgcgcgccccctctaatctgaaatcctggatccacacct
gi|6 : actcaagtaagcatcttaacgatttgtgttaaaacaaattaagcacgtatttgatgtacctaaaatatgtacaaacttattactcctactgtcgccaagtgtttggtcgatttttttccccttatcgttaaatctttatcgtttcgggtaattttacgcgaaaaagtttgttatagcggcactatcaacacgaaTTTGGCAAGCATAAGTTTTTCTTCTACACATTTACTCTGAACTAAAGTTACTATCAAAACGAATTGTGT--TGAAACACATTAAGCACGTATTTAAAGTACCTAAAATATGTATAAACTTACTACTTCTAGCATGATGCTTCAGTATATTCTA-CTGTAGCCCAGTGTTTGGTCCTTTTTT---AAG-TTTT
gi|6 : taagatgaacgtgttcttgagtttctaatcagtactgtactgctattgcgcttcattgtattttttctagactatagataaaacttaaaggcggattcaggggttaccccatcccccaaacaACCACCAAATCGAGCAATAA-TT-GAA---AAAAA--GCTGAATAGCTTTTTT---ACAAGTAGATCGTCATCTGCAGAAA-G---TCAAACG---CAG------AGGAAAATGTATGTATATTTGCATGTCATGACA-TGTGTAAATGA---TTTTAAATG------GACCAGTCTGCT-A---AAAC--ATGTATACAATTA-A--AATATCTACACTGCGTATGCCAAACCT--------TCAAAAGCACCGAGACAAAAAGAATCAAACTGGTGGAGAAACTGAGGCAAACAAATAATCAGTACAACACTGAAATCTATGTT----TT--ATCTATTTTCATTCAATGTTA----TA-TT----AAAAAAGATTTAGCCAG-TAAAA--CAATATGCCATTAGCCTGCTCCTAACAAGAGAGTGATGTGaccaccaaatcgagcaataattgaaaaaaagctgaatagcttttttacaagtagatcgtcatctgcagaaagtcaaacgcagaggaaaatgtatgtatatttgcatgtcatgacatgtgtaaatgattttaaatggaccagtctgctaaaacatgtatacaattaaaatatctacactgcgtatgccaaaccttcaaaagcaccgagacaaaaagaatcaaactggtggagaaactgaggcaaacaaataatcagtacaacactgaaatctatgttttatctattttcattcaatgttatattaaaaaagatttagccagtaaaacaatatgccattagcctgctcctaacaagagagtgatgtg
gi|7 : taagatgaacgtgttcttgagtttctaatcagtactgtactgctattgcgcttcattgtattttttctagactatagataaaacttaaaggcggattcaggggttaccccatcccccaaacatttggcaagcataagtttttcttctacacatttactctgaactaaagttactatcaaaacgaattgtgttgaaacacattaagcacgtatttaaagtacctaaaatatgtataaacttactacttctagcatgatgcttcagtatattctactgtagcccagtgtttggtccttttttaagttttATTATTACGCGAAAAAATTTGTTATGGCGGC
gi|7 : TGAATAGCTTTTTTT--ACATGTAGATCATCTTCTGCAGAAA-G---TCAAACG---CAG------AAGAAAATGTATGTATATTTGCATGTCATGATA-TGAGTAAATAA---TTTTAAATG------GACCAGTCTGCT-A---AAAC--ATGTATACAATTA-A--AATATCCACACTGCGTAGACCAAACTTCCAAACTTTCAAAAGCACCGAGACAGAAACAACCAAACTGGTGGACAAACTGAGGCAAACAAATAATCAATACAACACTGAAATCTATATT----T--CATCTATTTTCATTCA-------------------------------GCCAG-AAAAA--CAATATGCCATCGGCCTGCTCCTAACAAGATAGTGCTGTGCTATGATTGTGT--T--TAA--G-ACTAAT-TCTA--AGTGGTGCTGAAGCGTAATAGG--TAAGGCGTGCGC--CTGTCAATCTAGAGGTCTAATGTTCGAGCCTGCCTAGCGCCATTT--------TTTT-T--TT-TGTAAATAATAATGTTTATAA-A---A-A-AA-TTCAAGGTATACGTG---------TTATTATGTTTATCTTTATTTCAAAAAATTAAGTTATAAATGTATATATACATTCACTTAAGTAT-ATTTG-----CCGCCGCA-------C-----CCCCGCCCCTCTCC-------CAACCCCCCTAT-CAGTTCCTGGATCTGCACCTGCA-TGCCCCCTCTAAACTGAAATCCTGGGTCCTCCCCTtttgaatagctttttttacatgtagatcatcttctgcagaaagtcaaacgcagaagaaaatgtatgtatatttgcatgtcatgatatgagtaaataattttaaatggaccagtctgctaaaacatgtatacaattaaaatatccacactgcgtagaccaaacttccaaactttcaaaagcaccgagacagaaacaaccaaactggtggacaaactgaggcaaacaaataatcaatacaacactgaaatctatatttcatctattttcattcagccagaaaaacaatatgccatcggcctgctcctaacaagatagtgctgtgctatgattgtgtttaagactaattctaagtggtgctgaagcgtaataggtaaggcgtgcgcctgtcaatctagaggtctaatgttcgagcctgcctagcgccatttttttttttgtaaataataatgtttataaaaaaattcaaggtatacgtgttattatgtttatctttatttcaaaaaattaagttataaatgtatatatacattcacttaagtatatttgccgccgcacccccgcccctctcccaacccccctatcagttcctggatctgcacctgcatgccccctctaaactgaaatcctgggtcctcccctc
gi|8 : attattacgcgaaaaaatttgttatggcggcttTTTGGCAAGCATAGGTTTTTCTTCTACACATTTACCCTGAACTCAAGTAACCATCTGAAAGAGTTGTGT--TAAAACAAATTAAGCACGTATTTGATGTACCTTAAATATGTACAAACT-GCTACTTCTATCATGATGCTTGAGTATATTCTA-ATGTCGCCCAGTGTTTGGTCGTTTTTT-A-A-G-TTTTTTT--CCTTGTCGTTAAATCTTAATCGTTTCGGGTAATT-TT-CACGAAAAAGTTTGTTATGGCGGCACCATCAACACGAGCAAAAA-TT-GAA---AAAAA--GCTGAATAGCTTTTTTT--ACATATAGATCATCATCTGCAGAAA-G---TCAAACG---CAG------AAGAAAATGTATGTATATTTGCATGTCATGACA-TGTGT----GA---TTTAAAATT------GACCAGTCTGCT-A---AAAC--ATGTATACAATTA-A--AATATCCACACTGCGCAGACCAAACCT--------TCAAAAGCACAGAGACAGAAACAACCAAACTGGTGGACAAACTGAGGCAAACAAATAATCAATACAACACTGAAATCTATG------TTTCATCTATTTTCATTCAATGTTA----TA-TT---AAAAAAAGATTTAGCCAG-AAAAA--CAATATGCCATCAGCCTGCTCCTAACAAGATAGTGATGTGCTATGATTGTGT--C--TAA--G-ACTAAT-TCTA--AGTGGTACTc
gi|9 : ggcgcaccccccccccccttaaaaACTTCTAGCATGATGCTTGAGTATATTCTA-CTGTCGCCCAGTGTTTGGTC-TTTTTT-A-A-G-TTTTTTT--CCTTGTCGTTAAATCGTTATC-TTTCGGGTAATT-TTACGCGTAAAAGATTGTTGTGGCGGCACCATCAACGCGAGCAAAAT-TT-TAA---AAAAAA-TCTGAATAGCTTTTTTATTACATGTAGATCATCATCTGCAGAAA-G---TCAAACG---CAG------AAGAAAATGTATGTATATTTGCATGTCATGACA-TGTGCAAATAA---TTTTAAATG------GACCAGTCTGCTAA---AAAC--ATGTATACAATTA-A--AATATCAACACTGCATAGACCAAACCT--------TCAAAAGCACCGAGACAGAAACAACCAAACTGGTGGATAAACTGAGGCAAACAAATAATAAATACAGCAATGAAATCTATG------TTTCATTTATTTTCATTCAATGTTA----TA-TT--AAAAAAAATGTTTAGCCAG-AAAAA--CAATATGCCATCGGCCTGCTCCTAACAAGATAGTCATGTGCAATGATTGTGT--C--TAC--G-TCTAAT-TCTAAGAGTGGTGCTGTAGCGTAATAGG--TAAGGCGTGTGC--CTG-----CT---------------GAGCC---------ACAT-T--------TTTT-T--TT-TGTAAATAAAAATGTTTAT-A-A---A-ACAA-TTCAATGGATACA------------TATTATGTTTATCTTTATTTAAAAGAATTAAGTTATAAATG--TATAT
blockSeqs : TA C G TAAG T TT A G A CGC CA TTT TTT T ATT GAT TCTGCT C AAC CATCAA A GAC TG T TG CCAAACTT C TT TT TCAG T AA A AA G GAA AT TG G AG CT GG TTATTTTTA C TC G A C AAG T C GT T TTATTACGT TA T . CAGCCCCC G CCCCCACCCC AACCCTT CCCCCT T .
blockSeqs : . . T ATAA . . . . T . AA TTT TTT . . . . . . . . . . . . . G TT TT . . AA A . T GAA AT A G . . . TTT . CT . A . . . . T A . . A . CTG C CCTGTGCT CT . . .
blockSeqs : . . G TCA . . . . A . AA TTT TTT . . . . . . . . . . . . . C TT TT . . AA . . G T . C . . . . TT . CT . A . . . . T T . . A . CCG C CCCCCG . . . .
blockSeqs : . . A AAA . . . . A . AA TTT TTT . . . . . . . . . . . . . G TT TT . . TA . . T A . T . . . . TT . . . . . . . . T T . . T . TCG C CCC . . .
blockSeqs : . . T AA . . . . G . AA TTT TTT . . . . . . . . . . . . . G . TT . . AA . . G C . A . . . . T . . . . . . . . T T . . T . CCG A CCC . . .
blockSeqs : . . G AA . . . . G . AA TT ATT . . . . . . . . . . . . . G . TT . . A . . T A . T . . . . T . . . . . . . . A A . . T . AT C C . . .
blockSeqs : . . G AA . . . . T . A T T . . . . . . . . . . . . . G . TT . . . . . T G . A . . . . T . . . . . . . . A T . . T . CC G . . . .
blockSeqs : . . C AA . . . . . . . T T . . . . . . . . . . . . . C . T . . . . . A C . A . . . . T . . . . . . . . T T . . . . . . . . . .
blockSeqs : . . G A . . . . . . . . . . . . . . . . . . . . . . C . T . . . . . T C . A . . . . T . . . . . . . . T G . . . .
blockSeqs : . . . . . . . . . . . . . . . . . . . . . . . . . . C . . . . . . . G C . A . . . . T . . . . . . . . T A . .
blockSeqs : . . . . . . . . . . . . . . . . . . . . . . . . . . . . T T . A . . . . T . . . . . . . . T A .
blockSeqs : . . . . . . . . . . . . . . . . T C . A . . . . T . . . . . . . . T A .
blockSeqs : . . T C . T . . . . T . . . . . . . . . A .
blockSeqs : . T . . . . . . . . .
blockSeqs : . . . . . . . . .
blockSeqCons : AA*** N* ****** A* *** CCC***************
originalCons : TTTGGCAAGCATAGGTTTTTCTTCTACACATTTACTCTGAACTCAAGTAACCATCTAAACGATTTGTGT--TAAAACAAATTAAGCACGTATTTGATGTACCTAAAATATGTACAAACTTACTACTTCTAGCATGATGCTTGAGTATATTCTA-CTGTCGCCCAGTGTTTGGTCGTTTTTT-A-AAG-TTTTTTT--CCTTGTCGTTAAATCTTTATCGTTTCGGGTAATT-TTACGCGAAAAAGTTTGTTATGGCGGCACCATCAACGCGAGCAAAAA-TT-AAA---AAAAAAAGCTGAATAGCTTTTTTTTTACATGTAGATCATCATCTGCAGAAA-G---TCAAACG---CAG------AAGAAAATGTATGTATATTTGCATGTCATGACA-TGTGTAAATGA---TTTTAAATG------GACCAGTCTGCT-A---AAAC--ATGTATACAATTA-A--AATATCTACACTGCGTAGACCAAACTT--------TCAAAAGCACCGAGACAGAAACAACCAAACTGGTGGACAAACTGAGGCAAACAAATAATCAATACAACACTGAAATCTATGTT----TTTCATCTATTTTCATTCAATGTTA----TA-TTAAAAAAAAAAGATTTAGCCAG-AAAAA--CAATATGCCATCGGCCTGCTCCTAACAAGATAGTGATGTGCTATGATTGTGT--C--TAA--G-ACTAAT-TCTA--AGTGGTGCTGTAGCGTAATAGG--TAAGGCGTGCGC--CTGTCAATCTAGAGGTCTAACGTTCGAGCCTGCCTAGCGACA--T--------TTTT-T--TT-TGTAAATAAAAATGTTTAT-A-A---A-A-AA-TTCAAGGTATNCGTG---------TTATTATGTTTATCTTTATTTAAAAGAATTAAGTTATAAATG--TATATACATTCACTTAAGTAT-ATTTG-----CCGCCNCA-------C-----CC---CCCCACCCC-------TAAC------AT-CAATTCCTGGATCCGCACCTGCG-CGCCCCCTCTAAACTGAAATCCTGGATCCGCCCCT
finalCons : TTTGGCAAGCATAGGTTTTTCTTCTACACATTTACTCTGAACTCAAGTAACCATCTAAACGATTTGTGT--TAAAACAAATTAAGCACGTATTTGATGTACCTAAAATATGTACAAACTTACTACTTCTAGCATGATGCTTGAGTATATTCTA-CTGTCGCCCAGTGTTTGGTCGTTTTTTAA---G-TTTTTTT--CCTTGTCGTTAAATCTTTATCGTTTCGGGTAATT-TTACGCGAAAAAGTTTGTTATGGCGGCACCATCAACGCGAGCAAAAA-TTN-AA---AAAAAAAGCTGAATAGCTTTTTTTTTACATGTAGATCATCATCTGCAGAAA-G---TCAAACG---CAG------AAGAAAATGTATGTATATTTGCATGTCATGACA-TGTGTAAATGA---TTTTAAATG------GACCAGTCTGCT-A---AAAC--ATGTATACAATTA-A--AATATCTACACTGCGTAGACCAAACTT--------TCAAAAGCACCGAGACAGAAACAACCAAACTGGTGGACAAACTGAGGCAAACAAATAATCAATACAACACTGAAATCTATG------TTTCATCTATTTTCATTCAATGTTA----TA-TTA-AAAAAAAAGATTTAGCCAG-AAAAA--CAATATGCCATCGGCCTGCTCCTAACAAGATAGTGATGTGCTATGATTGTGT--C--TAA--G-ACTAAT-TCTA--AGTGGTGCTGTAGCGTAATAGG--TAAGGCGTGCGC--CTGTCAATCTAGAGGTCTAACGTTCGAGCCTGCCTAGCGACA--T--------TTTT-T--TT-TGTAAATAAAAATGTTTAT-A-A---A-A-AA-TTCAAGGTATNCGTG---------TTATTATGTTTATCTTTATTTAAAAGAATTAAGTTATAAATG--TATATACATTCACTTAAGTAT-ATTTG-----CCGCCNCACCC---------------CCCCACCCC-------TAAC------AT-CAATTCCTGGATCCGCACCTGCG-CGCCCCCTCTAAACTGAAATCCTGGATCCGCCCCT
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|22 ): GTTCTTGAGTTTCTTATCAATACTGCTCTGCTCATGCGCTTTATGGTATTTTATTTCTAGACTATATATATAAAGCAAGGGTGGATTCAGGGGGGT
Unaligned ( gi|25 ): TTTAGAGGTTATTCAGATACCTAAACCCAGGCTTAACTAAA
Alignments
lowQualScore : 111111111 111 111 11111111 1111 11111111111 11 111111111 333333333333333333 11111 1111111 111111 1
lowQualScore : 44 3 77 3 666666666 3 8 777 4 2 999 3 3 22222222 3 555 888888 3 6666 2222 2 2 5 33 2 99999 77 33 5 33 33 33 11111111111 2 00 2 7 2 666 2 2 33 1 111111111 0 55 2 4 0 3 2 999999999999999999 11111 66 3333333 111111 4 0 0 0 0
lowQualScore : .. . .. . ......... . . ... . . ... . . ........ . ... ...... . .... .... . . . .. . ..... .. .. . .. .. .. ........... . .. . . . ... . . .. . ......... . .. . . . . . .................. ..... .. ....... ...... . . . . .
lowQualScore : 66 3 99 3 222222222 6 1 666 4 0 555 3 3 11111111 5 444 888888 1 5555 4444 9 9 7 99 4 11111 99 33 7 99 99 99 66666666666 5 33 5 5 5 999 5 5 66 0 444444444 7 00 2 4 1 9 6 111111111111111111 11111 11 0000000 555555 0 0 2 2 2
consensus : TTTGGCAAGCATAGGTTTTTCTTCTACACATTTACTCTGAACTCAAGTAACCATCTAAACGATTTGTGT--TAAAACAAATTAAGCACGTATTTGATGTACCTAAAATATGTACAAACTTACTACTTCTAGCATGATGCTTGAGTATATTCTA-CTGTCGCCCAGTGTTTGGTC-GTTTTT-T--AA-G---TTTTTTTCCTTGTCGTTAAATCTTTATCGTTTCGGGTAATT-TTACGCGAAAAAGTTTGTTATGGCGGCACCATCAACGCGAGCAAAAATTNAAAAAAAAA-GCTGAATAGCTTTTTTTTTACATGTAGATCATCATCTGCAGAAAGTCAAACGCAGAAGAAAATGTATGTATATTTGCATGTCATGACATGTGTAAATGATTTTAAATGGACCAGTCTGCTAAAA-CATGTATACAATTA-AAATATCTACACTGCGTAGACCAAACTT--------TCAAAAGCACCGAGACAGAAACAACCAAACTGGTGGACAAACTGAGGCAAACAAATAATCAA---TACAACACTGAAATCTATGTT------TCATCTATTTTCATTCAATGTTAT-A----TT--AAAA-AAAAA-GATTTAGCCAG-AAAAA--CAATATGCCATCGGCCTGCTCCTAACAAGATAGTGATGTGCTATGATTGTGT--C--TAA--G-ACTAAT-TCTA--AGTGGTGCTGTAGCGTAATAGG--TAAGGCGTGCGC--CTGTCAATCTAGAGGTCTAACGTTCGAGCCTGCCTAGCGACA--T--------TTTT-T--TT-TGTAAATAAAAATGTTTAT-A-A---A-A-AA-TTCAAGGTATNCGTG---------TTATTATGTTTATCTTTATTTAAAAGAATTAAGTTATAAATG--TATATACATTCACTTAAGTAT-ATTTGCCGCCNCA-------C-----CC---CCCC-----ACCCC--TA-------AC------AT-CAATTCCTGGATCCGCACCTGCG-CGCCCCCTCTAAACTGAAATCCTGGATCCGCCCCT
Reference ( family-2158 ) : TTTGGCAAGCATAGGTTTTTCTTCTACACATTTACTCTGAACTCAAGTAACCATCTAAACGATTTGTGT--TAAAACAAATTAAGCACGTATTTGATGTACCTAAAATATGTACAAACTTACTACTTCTAGCATGATGCTTGAGTATATTCTA-CTGTCGCCCAGTGTTTGGTC-GTTTTT-T--AA-G---TTTTTTTCCTTGTCGTTAAATCTTTATCGTTTCGGGTAATT-TTACGCGAAAAAGTTTGTTATGGCGGCACCATCAACGCGAGCAAAAATTNAAAAAAAAA-GCTGAATAGCTTTTTTTTTACATGTAGATCATCATCTGCAGAAAGTCAAACGCAGAAGAAAATGTATGTATATTTGCATGTCATGACATGTGTAAATGATTTTAAATGGACCAGTCTGCTAAAA-CATGTATACAATTA-AAATATCTACACTGCGTAGACCAAACTT--------TCAAAAGCACCGAGACAGAAACAACCAAACTGGTGGACAAACTGAGGCAAACAAATAATCAA---TACAACACTGAAATCTATGTT------TCATCTATTTTCATTCAATGTTAT-A----TT--AAAA-AAAAA-GATTTAGCCAG-AAAAA--CAATATGCCATCGGCCTGCTCCTAACAAGATAGTGATGTGCTATGATTGTGT--C--TAA--G-ACTAAT-TCTA--AGTGGTGCTGTAGCGTAATAGG--TAAGGCGTGCGC--CTGTCAATCTAGAGGTCTAACGTTCGAGCCTGCCTAGCGACA--T--------TTTT-T--TT-TGTAAATAAAAATGTTTAT-A-A---A-A-AA-TTCAAGGTATNCGTG---------TTATTATGTTTATCTTTATTTAAAAGAATTAAGTTATAAATG--TATATACATTCACTTAAGTAT-ATTTGCCGCCNCA-------C-----CC---CCCC-----ACCCC--TA-------AC------AT-CAATTCCTGGATCCGCACCTGCG-CGCCCCCTCTAAACTGAAATCCTGGATCCGCCCCT
gi|1 : TTTGGTAAGCATAGGTTTT-CTTCTACACATTCACCCTGAACTCAAGTAACCATCTAAACGATTTGTGT--TAAAACAAATTAAGCACATATTTGATGTACCTAAAATATGTACAAACTTACTACTTCTAGCATGATGCTTGAGTATATTCTA-CTGTCGCCCAGTGTTTGGTC-GTTTTT-T--AAAG---TTTTTTTCCTTGTCGTTAGATCTATATCGTTTCTGGTAATT-TTACGCAAAAAAGTTTGTTATGGCGGCACCATCAACGCGAGCAAAAATTAAAAAAAAAAAGCTGAATAGCTTTTTTTTTACATATAGATCTTCATCTGCAGAAAATCAAACGCAGAAGAAAATGTATGTATATTTGCATGTCATGAC--GTGTAAATGATTTTAAATAGACCAGTCTGCTAAAA-CATGTATACAATTA-AAATATCTACACTGCGTAGACCAAACTT--------TCAAAAGCACCGATACAGAAACAACCAAACTGGTAGACAAACTGAGGCAAACAAATAATCAA---TACATCACTGAAATCTATGTTAAACTTTCATCTATTTTCATTCAATGTTAT-A----TT--AAAAAAAAAA-GATTTAGCCAG-AAAAA--CAATATGCCATCGGCCTGCTCCTAACAAGATAGTGATGTGCTATGATTGTGT--C--TAA--T-GCAAAT-CTAA--AGTGGTGCAGTAGCGTAATAGG--TAAAGCGTGCGC--CTGTCAATCTAGAGGTTTAACGTTCGAGCCTCCCTAGCGACA--T--------TTTT-T--TT-TGTTAATAAATACGTTTAT-A-AC--A-A-AA-ATCAAGGTATACGTG---------TTATTATGTTTACCTTTATTCAAAAGAATTAAGTTATAAATA--TATATACATTCACTTAAGTATAATTTGACGCCACA-------TA----CC---CCCC-----AACCC--TA-------AC------AT-TAATTCCTGGATCTGCACATGCGCCCCCCCCTCTAAACTGAAATACTTGATCCGCCCCT
gi|10 : GCATGATGTTTGAGTATATTATA-TTGTCGCCCAGTGTTTGGTC-GTTTTT-T---------------TCTTTGTTGTTAAATCTATATCGT-------AATT-TTACGCGAAACAGTTTGTTATGGCGGCACCATCAACGCGAGTAAAAATTAAAAAAAACA-GCTGAATAGCTTTTTT---ACATGTAGATCATC-----------------TGCAGAAGAAAATCTATGTATATGGG-ATGTCATGACATGTGTAAATTATTTTAAATAGGCCAGTCTGCTAAAA-CATGTATACAATTA-AAATATCTACACTGCCTAGACCAAACTT--------TCAAAAGCACCGAGACAGAAACAACCAAACTGGTTGACAAACTGAGGTAAACAAAAAATCAA---TACAACACTGAAATCTATG---------------TTTTCATTCAATGTTAT-A----TT--AAAA-AAAAA-GATTCAGCTAG--AAAA--CAATATGCCATCGGCCTGCTCCTAACAAGA-------------------TGT--T--TAA--T-AC-AAT-TTTA--AATGGTGCAGTAGCGTAATAGG--TAAGGCGTGCGA--CTGTCAATCTAAAGGTCTAACGTTCGAGCCTTCCTAGCGATA--T--------TTTT-T--TTGTGTAAATAAAAATGTTTAT-A-AAAGA-A-AA-TTCAAGGTAT
gi|11 : TTTGGCAAGCATAGGTTTTTCTTCTACACATTTACTCTGAACTCAAGTAACCATCTAAACGATTTGTGT--TAAAACAAATTAAGCACGTATTTAATGTACCTAAAACATGTATAAATTTCCTACTTATAGCATGATGCTTGAGTATATTCTA-CTGTCGCCCGGTGTTTGGTCTTTTTTT-T--CA-G---GTTTTTTCCTTGTCGTTAAATCTTTATCGTTTCGGGTAATT-TTACGCAAAAAAGTTTGTGATGGCGGCACCATCAAAGCGAGC-AAAATTTAAAAAAAAA-GTTGAGTAGC---TTTTTTACAAGTAGATCATCATCTGCAGAAAGACAAACGCAGAAGAAAATGTATGTATATTTGCATGTCATGACATGTGTGAATGATTTTAAATGGACCAGTCCGCTAAAA-CATGTATACAATTA-AAATATCTACACTGCGT---------------------AAAAGCACCGAGACAAAAAGAACCAAAATGG-GGACAAACCAAG
gi|12 : aaaaGGCAAGCATAGGTTTTTCTTCTACACATTTACCCTGAACTCGAGTAACCATCTAAACGATATGTGT--TAAAACAAATTAAGCACGTATTTGATGTACCTAAAATATGTACAAACTTACTACTTCTAGCATGATGCTTGAG----------------CCCAGTGTTTGGTC-GTTTTT-TTAAG-G---TTTTTTTCCTTGTCGTTAAATCTTTATCGTTTCGGGTAATT-TTACGCGAAAAAGTTTGTAATGGCGGCACCATCAACGCGATCAAAATTT----AACAAA-GCTGAATAGC---TTTTTTACATGAAG---ATCATCTGCAGAAAGTCAAACGCAGAAGAAAATGTATGTATATTTGCATGTCATGAC--GTGTAAATGATTTTAAAT
gi|12 : A-CGTGTAAATGATTTTAAATATCTACACTACGTAGACCAAACTT--------TCAAAAGCACCGAGACAGAAACAACCAAACCGGTGGACAAACTGAAGCAAACAAAatctacactacgtagaccaaactttcaaaagcaccgagacagaaacaaccaaaccggtggacaaactgaagcaaacaaa
gi|13 : ggcaagcataggtttttcttctacacatttaccctgaactcgagtaaccatctaaacgatatgtgttaaaacaaattaagcacgtatttgatgtacctaaaatatgtacaaacttactacttctagcatgatgcttgagcccagtgtttggtcgtttttttaaggtttttttccttgtcgttaaatctttatcgtttcgggtaattttacgcgaaaaagtttgtaatggcggcaccatcaacgcgatcaaaatttaacaaagctgaatagcttttttacatgaagatcatctgcagaaagtcaaacgcagaagaaaatgtatgtatatttgcatgtcatgAGACAAAAAGAACCTAACTGGTGGACAAACTGAGGCAAACAAATAATCAA---TACCACACTGAAATCTATGTT------TTATCTATTTTCGTTCAATGTAAT-A----TT----AA-AAAAA-GATTTAGCCAG-TAAAA--CAATATGCTATCAGCCTGCTCCTAACAAGAGAGTGATGTGCTATGATTGTGA--A--TAAATG-CTTAATGTCTA--AGTGGCGCTGTAGCGTAATAGG--TAAGGCGTGTGC--ATGTCAATCCAGAGGTCTAACGTTCGAGCCTGCCTAGCGACA--T--------TTTTCT--TT-TGAAAATAAAAATGTGTAT-A-A---A-A-AAGTTAAATGTATTTGGG---------TAACTATTTTCATCTTTATTTTAAAGAATTAAGTTATAAATG--TATATACATTCAAT------T-CCTTGAT-CCGCA-------CCTGTGCT---CCCC-----GCCCCCTTA-------AC-------T-GAAATCCTGGATCCG
gi|14 : AAACTGGTGGACAAACTGAGGCAAACAAATAATCAA---TACAACACTGAAATCTTTGTT------TCATCTATTTTCATTCAAAGTTAT-A----TT--AAAA-AAAAACGATTTAGCCAG-AAAAA--CAATATGCCATCGACCTGCTCCTAACAAGATAGTGATGTGCTATGATTGTGT--C--TTA--G-TCTAAT-TCTA--AGTAGTGATGTAGTGTAATAGG--TAAAGCATACGC--CTGTCAATCTAAAGGTCTAACATTTGAGCCTGCCTAGCGGTAT-T--------TTTT-T--TT-TGTAAATAAAAATTTTTATAA-A---A-A-AA-TTCAAGGTTTACGTG---------TTATTATGTTTAGCTTTA-TTAAAATAATTAAGTGATAAATG--TATATA---TCACTTAAGTAT-ATTTGCTGCCCTACCCCCACC-----CC---CCCC-----ACCCC--TA-------AC------AT-CAATTCCTGGATCCACAtc
gi|15 : AA-AAAAA-GATTTAGCCAG-AAAAAAACAATATGCCATCGTCCTGCTCCTAACAAGAGAATGATGTGCTATGATTGTGT--GAATAA--ATGCTCGTGTCTA--AGTGGTAATTTAGCG-AATAGG--TAAGGCCTGCGC--CTGTCAATCTAGAGGTCTATCGTTCGAGCCTGCCTAGCGACA--T--------TTTT-T--TT-TGTAAATAAAAATGTTTATAA-A---A-A-AA-TTCAAGGTATTTGTG---------TTATTATTTTTATCTTTATTTAAAAGAATTAAGTTATAAATG--TATATACATTCACTAAAATAT-ATT-----CCCCC-------C-----CC---CCCC-----CCTTC--TA-------AC------AT-CCATTCCTGGAATCGCACCac
gi|16 : tAATTAAAGTTACAAAA---AAA---ATATT------TCATCTATTTTCATTCAATGTTAT-A----TT--AAAA-AAAAA-GATTTAGCCAG-AAAAA--CAATATGCCATCGGCCTGCTCCTAACAAGATAGTGATGTGCTATGATTTTGT--A--TAA--A-ACTAAT-TCTA--AGTGGTGCTGTAGCGTAATAGG--TAGGGTGTGTGC--CTGTCAATCTAGAGGTCTAACGTTCGAGCTTGCCTAACAACA--T--------TTGT-T--TT-TGTAAATAAAAATATTTAT-T-A---A-A-AA-
gi|17 : TTGGCAAACATAGGTTTTT-TTCTACACATTTACTCTAAACTCAAGTTACCATCTAAACGAATTATGTTATAAAACAAATTAAGCACGTATTTAAAGTACC
gi|18 : ttgttgagtttctaatcagtactgttctgctcttgcgcttatggtattttatttatagactatagatataaagcaagggcagattcaggggggtacccccccccaaaaaaaaaaataaataataataataaataaataaaaaaaataaaaaaTTGGCAAGCATAGGTTTTTCTTCTACACATATACTCTGAACTCAAGTTACCATTTAAACGAATTGTGT--TAAAACAAATTAAGCACATACTTAAAGTA
gi|19 : tgttgagtttctaatcagtactgtactgctcttgcgcttatggtatttaatttatagactatagatataaagcaagagcagattcaggtgggaacccccacaccccgcacccccaccccccaaaaatattaaaaataaaaataaaaaaGCTGATGTGAAACAGGCTTAAGGCGTGCGC--GTGTTAATCTAGAGGCCTAACGTTCGAGGCTGCCTAGCGACA--T--------TTTT-TTCTT-TGTAAAT---------------A---A-A-AC-TTCAAGGTATTCGCG---------TTATCATTTTTATCTTTATTTAAAAGAATTAAGTTATAAATG--CATATAGATTCA
gi|2 : TTTGGCAAGCATAAGTTTTCCTTCTACACATTTACTCTGAACTCAAGTAACCACATAAACGATTTGTGT--TAAAACAAAATAAGCACGTATTTAATGTTCCTAAAACATGTATCAACTTACTACTTCTAGCATGATGCTTGAGTATATTCTACCTGTCGCCCAGTGTTTGGTA-TTTTTTAT--AA-GT--TTTTTTTCCTTGTCGTTAAATCTTTATCGTTTCGGGTTATT-TTACGCGAAAAAGTTTGTGATGGC-GTGCCG-CA--GCGAGCAAAAATT-AAAAAATAA-GTTGAATAGC---TTTTTTACAAGTAGATCATCATCTGCAGAAAGTCAAACGCAGAAGAAAATGTA-GTATATTTGCATGTCATGACATGTGTAAATAATTTTAGATGGACCAGTCTGCTAAAA-CATGTATACAATTA-AGATATCTACACTATGT---------------------AAAAGCACCGAGACAGGAAGAACCAAACTGGTGGACAAATTGACGCAAACAAATAATCAA---TACAACACTGAAATCTACGAT------TCATCTATTTCCATTCAATGTTAT-A----TT----AA-ATAAA-GATTTAGCCAGAAAAAA--CAATATGCCATCGGCCTGCCCCTAACATGAGAGTGATGTGCTATGATTGTGTGAA--TAAATG-TTCAAT-TCTA--AGTGGTACTTTAGCGTAATAGG--TAAGGCGTGCGC--CTGTTAATCTAGAGGTCTATCGTTCGAGCCTGCCTAGCGGCA------------TTT-T--TT-TGTAAAT-AAAACATTTAT-A-A---A-A-AA--ACAAGGTATTCGTG---------TTATTATTTGTATCTTTATTTAAAAGAATTAAGTTATAAATA--TATATACACTCACTAAAATAT-AT---CC-CCCCA------------------CCAC-----ACCCC--TA-------AC------AT-CCATTCCTGGATTCGCACCTtggtaataatacagtgacgtcagcgtac
gi|20 : tagaatattgccatcaaggacgtattcaggcgggcgggcacccgcacccccccccccccccctccctctaaaaACAA-AT-GCGATGTGCTATAATTTAGT--G--TAA--G-ACTAAT-TCTA--AGTGGTGCTGTAGCGTAATAGG--TAAGGCCTGCGC--CTGTCAATCTAGAGGTCTAACGTTCGAACCTGCCTAGTGACA--T--------TTTT-T--TT-TGTAA-----------------------------TCAAGGTATACATG---------TTATTATGTTTATCTTTATTTAAAAGAATTA
gi|21 : CGATTTGTGT--TAAAACAAATTAAGCACGTTTTTGATGTACCTAAA-TATGTTCAAACTTACTACTTCTAGCATGATGCTTGAGTATATTCTA-CTTACGCCCAACGTTTGGTC-TTTTTT-T--A---------------TTATCGTTAAACC
gi|23 : tctatCTTAACGACA--T--------TTTT-TCTTT-TGTAAATAAAAATGTTTTT-A-A---A-A-AA-ATCAAGGTATTCGTA---------TTATTATTTTTATCATTA
gi|24 : aggtggggcgcacCTTAACGACA--T--------TTTT-TCTTT-TGTAAATAAAAATGTTTTT-A-A---A-A-AA-ATCAAGGTATTCGTA---------TTATTATTTTTATCATTA
gi|26 : ggtggggcgcacGCAT-GGTTTTTCTTCTACACATTTACCCTGAACTCAAGTa
gi|27 : -------AC------ATTCAATTCCTGGACCCGCACC
gi|3 : atgtatatTTTGGCAAGCATAGGTTTTTCTTCTACACATTTACTCTGAACTCAAGTAACCATCTAAACCATTTGTGT--CAAA-CAAATTAAGCACATATTTAATGTACCTAAACTATGTACAAACGTACTACTTCTAGCATGATGCTTGAGTATATTCT----GTCGCCCAGTGTTT----------T-T--AA-G---TTTTTTTTCTTGTCGTTAAATCTTTATCGTTTCGGGTAATT-TTACGCGAAAAAGTTTGCTATGGCGGCACCATCAACGCGAGCAAAAATTAAAAAAA------------GCTT--------CATGTAGAACATCATTTGCAGAAAGTCAAACGCAGAAGAAAATGTATGTATATTTGCATGTCATGACATGTGTAAATGATTTTAAATGGACCAGTCTGCTAAAA-CATGTATAATATTA-AAATATCTACACTGCGTAGACCAAACTT--------TCAAAAGCACCGAG--------------ACTGGTGGACAAACTGAGGCAAATAAATAATCAA---TACAACACTGAAATCTATGTT------TCATCTATTTTCATTCAATGTTATCAGTATTT--AAAA-AAAAA-----TAGCCAG-AAAAA--CAATATGCCATCTGCCAGCTCCTAACAAGATAATGATGTGCTATGATTGTGT--C--TAA--G-ACTAAT-TCAA--AGTGGTGCTGTAGCGTAATAGG--CAATGCGTGTGCGGTCGTCAATCTATAGGTCTAACGTTCAAGCCTGCCTAGCAACA--T--------TTTT-T--TT-TGTAAATAAAAATGTTTAT-A-A---A-A-AA-TTCAAGGTATGCGTG---------TTATTATGTTTATCTTTATTTAAAAGAATTAAGTTATAAATG--TATATACATTCACTTAAGTAT-ATTTGCCGCCACA-------------------CCC-----ACCCC--TA-------AC------AT-CAATTTCTGGATCCGCAC
gi|4 : tcaagggcggattcagggtgccccaacatcccctaaaaAACGATTTGTGT--TAAAACAAATTAAGCACGTATTTGATGTACCTAAAGTATGTACAAACATACTACTTCTAGCATGATGCTTGAGTATATTCTA-CTGTCTTTCAGTGTTTGGTC-GTTTTT-T--AA-AGTTTTTTTTTCCTTGTCGTTAAATCTTTACCGTTTCGGGTAATT-TTACGCGAAAAAGTTTGTTATGGTGGCACCATCAACGCGAGCAAAAATTTGAAAAAAA--GCTGAATAACTTTTTTT--ACATGTATATCATCATCTGCAGAAAGTCAAACGCAGAAGAAAATGTATGTATATTTGTATGTCATGACATGTGTAAATGATTTTAAATGGACCAGTCTGCTAAAA-CATGTATACAATTA-AAATATCTACACGGAGTAGACCAAACTT--------TCAATAGCACCGAGACAGAAAGAATCAAA------GACAAACTGAGGCTTACACATTATCAA---TACAACATTGAAATCTATATT------TCATCTATTTTCATTCAATGTTAT-A----TT--AAAA-AAAA--GATTTAGTCAG-AAAAA--CAATATGCCATCGGCCTGCTCCTAACAAGAAAGTGACGTGCTATGATTGTGT--C--TAA--G-ACTAAT-TCTA--AGTGGTGCTGTAGTGTAACAGG--TATGACGTGCAC--CTGTCAATCTAGAGGTCTAACGTTCGAGTCTGCCTAGCGACA--T--------TTTT-T--TT-TATAAATAAAAATGTTTAT-C-G---ATA-AA-TTCAAGGTATACCTA---------TTATAATGTTTATCTTTATTTAAAAGAATTAAGTTATAAATG--TTTTTACATTCACTTAAGTAT-ATTTGCAGCCCCC-------C-----CC---CCCCCCCCCACCCC--AACCCTTTTAC------TT-CAATTCCTGTATCCGCATCTGCG-CACCCCTTCTAAACTGAAATCGTGCATCCGCTCCT
gi|5 : ACTCAAGTAAGCATCTTAACGATTTGTGT--TAAAACAAATTAAGCACGTATTTGATGTACCTAAAATATGTACAAACTTATTACTCCTA------------------------CTGTCGCCAAGTGTTTGGTC-GATTTT-T------------TTCCCCTTATCGTTAAATCTTTATCGTTTCGGGTAATT-TTACGCGAAAAAGTTTGTTATAGCGGCACTATCAACACGAACAAAAAGTCAAA
gi|5 : CAAAAAGTCAAACGCAGAAGAAAATGTATGTATATTTGCATATCATGATATGTGTAAATGATTTTAAATGGATCAGTCTGCTAAAA-CATGTATACAATTA-AAATATCTACACTGCGTAGACCAAACCT--------TCAAAAGCATCAAG---------ACCAAACTGGTGGACAAACTGAGGCAAACAATTAATGAA---TACAACACTGAAATCTATGTT------TCATCTATTTACATTCAATGCTAT-A----TTTAAAAA-AAAAA-GATTTAGCAAGAAAAAA--CAATATGCCATCGGCCTGCTCCTAACAAGATACTGATGGCCTATGATTGTGT--C--TAA--G-ACTAAT-TCTT--AGTGGTGCTGTAGCGTAATATG--TTAGGCGTGCGC--CTGTCAATCTAGACGTCTGACGTTCGAGACTGCCTAACGACA--TTATTTTTATTTT-T--TT-TG-AAATAAAAAAAATTAT-ACA---A-A-AA-TTCAAGTTATACGTGTTATTACGTTTATTATGTTTATTTTTATTTGAAAGAATTAAGTTATAAATG--TATTTACATTCACTTAAGTAT-ATTTGTCG-------------------C---CCCC-----ATCCC--TA-------AC------AT-CAGTTCCTGGATCTGCGCCTGCG-CGCCCCCTCTAATCTGAAATCCTGGATCCACACCTcgcagaagaaaatgtatgtatatttgcatatcatgatatgtgtaaatgattttaaatggatcagtctgctaaaacatgtatacaattaaaatatctacactgcgtagaccaaaccttcaaaagcatcaagaccaaactggtggacaaactgaggcaaacaattaatgaatacaacactgaaatctatgtttcatctatttacattcaatgctatatttaaaaaaaaaagatttagcaagaaaaaacaatatgccatcggcctgctcctaacaagatactgatggcctatgattgtgtctaagactaattcttagtggtgctgtagcgtaatatgttaggcgtgcgcctgtcaatctagacgtctgacgttcgagactgcctaacgacattatttttattttttttgaaataaaaaaaattatacaaaaattcaagttatacgtgttattacgtttattatgtttatttttatttgaaagaattaagttataaatgtatttacattcacttaagtatatttgtcgcccccatccctaacatcagttcctggatctgcgcctgcgcgccccctctaatctgaaatcctggatccacacct
gi|6 : actcaagtaagcatcttaacgatttgtgttaaaacaaattaagcacgtatttgatgtacctaaaatatgtacaaacttattactcctactgtcgccaagtgtttggtcgatttttttccccttatcgttaaatctttatcgtttcgggtaattttacgcgaaaaagtttgttatagcggcactatcaacacgaaTTTGGCAAGCATAAGTTTTTCTTCTACACATTTACTCTGAACTAAAGTTACTATCAAAACGAATTGTGT--TGAAACACATTAAGCACGTATTTAAAGTACCTAAAATATGTATAAACTTACTACTTCTAGCATGATGCTTCAGTATATTCTA-CTGTAGCCCAGTGTTTGGTC-CTTTTT-T--AA-G---TTTT
gi|6 : taagatgaacgtgttcttgagtttctaatcagtactgtactgctattgcgcttcattgtattttttctagactatagataaaacttaaaggcggattcaggggttaccccatcccccaaacaACCACCAAATCGAGCAATAATTGAAAAAAA---GCTGAATAGCTTTTTT---ACAAGTAGATCGTCATCTGCAGAAAGTCAAACGCAGAGGAAAATGTATGTATATTTGCATGTCATGACATGTGTAAATGATTTTAAATGGACCAGTCTGCTAAAA-CATGTATACAATTA-AAATATCTACACTGCGTATGCCAAACCT--------TCAAAAGCACCGAGACAAAAAGAATCAAACTGGTGGAGAAACTGAGGCAAACAAATAATCAG---TACAACACTGAAATCTATGTT------TTATCTATTTTCATTCAATGTTAT-A----TT-----A-AAAAA-GATTTAGCCAG-TAAAA--CAATATGCCATTAGCCTGCTCCTAACAAGAGAGTGATGTGaccaccaaatcgagcaataattgaaaaaaagctgaatagcttttttacaagtagatcgtcatctgcagaaagtcaaacgcagaggaaaatgtatgtatatttgcatgtcatgacatgtgtaaatgattttaaatggaccagtctgctaaaacatgtatacaattaaaatatctacactgcgtatgccaaaccttcaaaagcaccgagacaaaaagaatcaaactggtggagaaactgaggcaaacaaataatcagtacaacactgaaatctatgttttatctattttcattcaatgttatattaaaaaagatttagccagtaaaacaatatgccattagcctgctcctaacaagagagtgatgtg
gi|7 : taagatgaacgtgttcttgagtttctaatcagtactgtactgctattgcgcttcattgtattttttctagactatagataaaacttaaaggcggattcaggggttaccccatcccccaaacatttggcaagcataagtttttcttctacacatttactctgaactaaagttactatcaaaacgaattgtgttgaaacacattaagcacgtatttaaagtacctaaaatatgtataaacttactacttctagcatgatgcttcagtatattctactgtagcccagtgtttggtccttttttaagttttATTATTACGCGAAAAAATTTGTTATGGCGGC
gi|7 : TGAATAGCTTTTTTT--ACATGTAGATCATCTTCTGCAGAAAGTCAAACGCAGAAGAAAATGTATGTATATTTGCATGTCATGATATGAGTAAATAATTTTAAATGGACCAGTCTGCTAAAA-CATGTATACAATTA-AAATATCCACACTGCGTAGACCAAACTTCCAAACTTTCAAAAGCACCGAGACAGAAACAACCAAACTGGTGGACAAACTGAGGCAAACAAATAATCAA---TACAACACTGAAATCTATATT------TCATCTATTTTCATTCA----------------------------------GCCAG-AAAAA--CAATATGCCATCGGCCTGCTCCTAACAAGATAGTGCTGTGCTATGATTGTGT--T--TAA--G-ACTAAT-TCTA--AGTGGTGCTGAAGCGTAATAGG--TAAGGCGTGCGC--CTGTCAATCTAGAGGTCTAATGTTCGAGCCTGCCTAGCGCCATTT--------TTTT-T--TT-TGTAAATAATAATGTTTATAA-A---A-A-AA-TTCAAGGTATACGTG---------TTATTATGTTTATCTTTATTTCAAAAAATTAAGTTATAAATGTATATATACATTCACTTAAGTAT-ATTTGCCGCCGCA-------C-----CCCCGCCCC-----TCTCC--CA-------ACCCCCCTAT-CAGTTCCTGGATCTGCACCTGCA-TGCCCCCTCTAAACTGAAATCCTGGGTCCTCCCCTtttgaatagctttttttacatgtagatcatcttctgcagaaagtcaaacgcagaagaaaatgtatgtatatttgcatgtcatgatatgagtaaataattttaaatggaccagtctgctaaaacatgtatacaattaaaatatccacactgcgtagaccaaacttccaaactttcaaaagcaccgagacagaaacaaccaaactggtggacaaactgaggcaaacaaataatcaatacaacactgaaatctatatttcatctattttcattcagccagaaaaacaatatgccatcggcctgctcctaacaagatagtgctgtgctatgattgtgtttaagactaattctaagtggtgctgaagcgtaataggtaaggcgtgcgcctgtcaatctagaggtctaatgttcgagcctgcctagcgccatttttttttttgtaaataataatgtttataaaaaaattcaaggtatacgtgttattatgtttatctttatttcaaaaaattaagttataaatgtatatatacattcacttaagtatatttgccgccgcacccccgcccctctcccaacccccctatcagttcctggatctgcacctgcatgccccctctaaactgaaatcctgggtcctcccctc
gi|8 : attattacgcgaaaaaatttgttatggcggcttTTTGGCAAGCATAGGTTTTTCTTCTACACATTTACCCTGAACTCAAGTAACCATCTGAAAGAGTTGTGT--TAAAACAAATTAAGCACGTATTTGATGTACCTTAAATATGTACAAACT-GCTACTTCTATCATGATGCTTGAGTATATTCTA-ATGTCGCCCAGTGTTTGGTC-GTTTTT-T--AA-G---TTTTTTTCCTTGTCGTTAAATCTTAATCGTTTCGGGTAATT-TT-CACGAAAAAGTTTGTTATGGCGGCACCATCAACACGAGCAAAAATTGAAAAAAA---GCTGAATAGCTTTTTTT--ACATATAGATCATCATCTGCAGAAAGTCAAACGCAGAAGAAAATGTATGTATATTTGCATGTCATGACATGTGT----GATTTAAAATTGACCAGTCTGCTAAAA-CATGTATACAATTA-AAATATCCACACTGCGCAGACCAAACCT--------TCAAAAGCACAGAGACAGAAACAACCAAACTGGTGGACAAACTGAGGCAAACAAATAATCAA---TACAACACTGAAATCTATGTT------TCATCTATTTTCATTCAATGTTAT-A----TT----AA-AAAAA-GATTTAGCCAG-AAAAA--CAATATGCCATCAGCCTGCTCCTAACAAGATAGTGATGTGCTATGATTGTGT--C--TAA--G-ACTAAT-TCTA--AGTGGTACTc
gi|9 : ggcgcaccccccccccccttaaaaACTTCTAGCATGATGCTTGAGTATATTCTA-CTGTCGCCCAGTGTTTGGTC--TTTTT-T--AA-G---TTTTTTTCCTTGTCGTTAAATCGTTATC-TTTCGGGTAATT-TTACGCGTAAAAGATTGTTGTGGCGGCACCATCAACGCGAGCAAAATTTTAAAAAAAA--TCTGAATAGCTTTTTTATTACATGTAGATCATCATCTGCAGAAAGTCAAACGCAGAAGAAAATGTATGTATATTTGCATGTCATGACATGTGCAAATAATTTTAAATGGACCAGTCTGCTAAAAACATGTATACAATTA-AAATATCAACACTGCATAGACCAAACCT--------TCAAAAGCACCGAGACAGAAACAACCAAACTGGTGGATAAACTGAGGCAAACAAATAATAAA---TACAGCAATGAAATCTATGTT------TCATTTATTTTCATTCAATGTTAT-A----TT--AAAA-AAAAT-G-TTTAGCCAG-AAAAA--CAATATGCCATCGGCCTGCTCCTAACAAGATAGTCATGTGCAATGATTGTGT--C--TAC--G-TCTAAT-TCTAAGAGTGGTGCTGTAGCGTAATAGG--TAAGGCGTGTGC--CTG-----CT---------------GAGCC---------ACAT-T--------TTTT-T--TT-TGTAAATAAAAATGTTTAT-A-A---A-ACAA-TTCAATGGATACA------------TATTATGTTTATCTTTATTTAAAAGAATTAAGTTATAAATG--TATAT
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|22 ): GTTCTTGAGTTTCTTATCAATACTGCTCTGCTCATGCGCTTTATGGTATTTTATTTCTAGACTATATATATAAAGCAAGGGTGGATTCAGGGGGGT
Unaligned ( gi|25 ): TTTAGAGGTTATTCAGATACCTAAACCCAGGCTTAACTAAA