lowQualScore : 11111111111111111111111111111111111111111111111 22222222222222222222222222222222222222222222222222222222222222222222222 222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
lowQualScore : 1 111 99999999999999999999999999999999999999999999999999999999999999999 1111 1111111 333333333333333333333333 2222222 44444444444444444444444444444444444444444444444 222222 22222222222222222222222222222222222 1111 22222222222222222222222222222222222222222222222222222222222222222222222 33333333333333 22222222222 2222222222 666666666666666666666 1111 1 66666666666666666 11 2222222 11 22222222222 1 666666666666666 1 333333333 4444 1 1 55555555555 2222222 3333333 111 11 111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 22 22 1 11 22 1 11 55
lowQualScore : 66 5 1 111 7 5 88888888888888888888888888888888888888888888888888888888888888888 0000 8 77 5 2222222 888888888888888888888888 66 2 1111111 55555555555555555555555555555555555555555555555 4 6 6 77 1 5 111111 44444444444444444444444444444444444 6 0000 00000000000000000000000000000000000000000000000000000000000000000000000 22 99999 00000000000000 4 99 44444444444 5555555555 777777777777777777777 4444 0 1 5 9 3 6 99 3 3 6 00000000000000000 99 4444444 11 1 88888888888 0 0 3 333333333333333 7 11 2 333333333 9 3 4 66 5555 3 1 0 11 3 6 5 4 7 3 66 77777777777 9999999 0 1111111 777 88 88 999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999 66 4 00 11 7 6 99 9 22 6 3 7 22 6 6 55
lowQualScore : .. . . ... . . ................................................................. .... . .. . ....... ........................ .. . ....... ............................................... . . . .. . . ...... ................................... . .... ....................................................................... .. ..... .............. . .. ........... .......... ..................... .... . . . . . . .. . . . ................. .. ....... .. . ........... . . . ............... . .. . ......... . . . .. .... . . . .. . . . . . . .. ........... ....... . ....... ... .. .. .............................................................................................................................................................................. .. . .. .. . . .. . .. . . . .. . . ..
lowQualScore : 11 7 4 000 0 7 77777777777777777777777777777777777777777777777777777777777777777 0000 1 99 0 1111111 111111111111111111111111 99 4 3333333 88888888888888888888888888888888888888888888888 7 7 0 99 1 7 000000 55555555555555555555555555555555555 7 3333 88888888888888888888888888888888888888888888888888888888888888888888888 11 77777 33333333333333 2 22 55555555555 0000000000 555555555555555555555 2222 5 5 0 3 5 0 22 8 2 5 55555555555555555 00 4444444 00 8 22222222222 5 2 2 222222222222222 0 00 2 000000000 0 7 0 77 3333 7 0 7 77 3 7 0 7 3 7 77 33333333333 7777777 7 3333333 000 33 33 444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444 22 2 00 00 0 0 00 0 00 0 0 0 00 0 0 00
consensus : GAGGTGTGTC-C-A-AAA-G-TTCGTGGACAA-C---CT-T---AAAACNAGAACTAAACGT-ATANCATTTATA-AAC-----------------TATAATTTATACAGCCATGTAGA--TAAATTTTATA-CNATTAAGAATGTN--AA----------------AT--ATNAAAN-TGGN-ACACC------GAA--T------N-----------TTAT-T-------G---CTNATGT-AACTACATACACAGTACTATG--TGCG-G---GGCAGGTGCCG-ACGTCACGNTGACGTTCGGCGTCG-CT-C-TGACG-CTCCTTAAGTG--T-TGTTCAGTGTT-GCGC--T---TN--C-ACCGT-----------C---ATA--GG--TA--------GCTAGGTGAAAGTTCAAAG-TTTTTCAAAGTAATGTCCG--TTT-NTT-GTAAGCATTTCT----------GGTT----------C----------AT----GTTGCGAAAACTNATTCATACA--ATCGAGCATCNAACCTTTCTGGC----TGTTGCACGNGTGTTG------TGAATA--AGTCGCTATC-GCATGTC--TGACTCCTTTAAN----TTGT--CTCGGTCATCTTCCG---TNGAG-TTTTTTCCATNAGANATTCGTCTGTGC-TATTTGTAAACNAAAGAACGATATACTTTCGATTTTC-CAGTT-CAGACTCGATAATTTTAACAGTTTCCGNAGGCGATTTTCGAATCGAA-AC--GCATAATTTAATAGTTGTCCTCTCT---NC-CGTGACGTCAGAATC--AC----------ATAT------------------------TTATG---N----AAACAGCTTGCAAATTTT--A-------CG-T--GTTGNCANTGAN------ATTTTCAG-AATATGAC--CNC----TCACATGC-A-ATTT----T--------AACCGTAAA-----ATTTCGACACGTTTACTNCTTTCGNTTCTATGTAATGCCCGTATACGTTANNGGTATGCNATTCGTCTTTCTAATGAGCT--GTGATTT
Reference ( gi|1 ) : GAGGTGTGTC-C-A-AAA-A-TTTGTGAACAA-C---TT-T---AAAACAAGAACTAAAAAT-ATAACATTTATA-AAC-----------------TATAATTTACACAGCCATGTATA--TAAATTTTATA-CAATTAAGAATATT--AA----------------AT--ATTAAAG-TGGA-ACACC------AAA--T------T-----------TTA----------G---CTTATGT-AACCACATACACAGTACTATG--TATG-G---GATAGGTGCTC-ACATCATTTTGATATTCAGTATCA-CT-C-GAACG-CTCCTTCAATG--T-TGTTCAGTGCT-GGGC--T---TT--C-ACGGT-----------C---ATAAAGGCCTAGC-----CGCTAGGTGAAAGTTCAAAG-TTTCTCAAAGTACTGTCTG--TTT-GTT-GTAAGAATTTCT----------GGTT----------C----------AT----GTTGCGAAAATTGATTTATGCA--ATTGAGCATCCAACCTTTCTGAC----TATTGCACCTGTGTTG------TGAATA--AATTGCTATCAGCATGTT--TGTCTCCTTTAAT----TTGG--TT--GTCTTCTTCTG---TGGAG-TTTTTTCTATCAGAAATCCGTCTG--C-TATTTGTAAACCAAAGAACAATACACTTTCAGTTTTC-CAGTTGCAGACTTGATAATTTTAACAGTTTCCGCAGGTAGTTTTCGAATATAA-AC--ACATAATTTGATAATGGCCCTCTCT---CC-TGTGATGTCAAAATC--AC----------ATGT------------------------TTATG---A----AAACAGCTTGCGAATGTT--A-------CA----GTTGACATTGAC------ATTTTCAG-AATATGAC--C------TCACATGT---ATTT----T--------AACTGTAAA-----ATGTTGGCACATTTACACCTTTTGAATCAATGTAATACATGTGTACATTACAGGTGTGCTAATCATCTCCCTAATAAGTTGAGTGATTT
gi|4 : GAGGTGT----C-A-AAA-G-TGTGTGTA-----------T---AAAGCATAAACTGAACATTATAA-ATTCATA---------------------TAAAAT--ATACAGCCATATATA--TAAATTTCATA-CTATTAAGATTGTA--AA----------------AT--ATTACAT-TTAT-ACACC------AAA--TAAAACAA-----------GCA----------GGCACTAATGT-TACTACGCACAAAGTAATGCG--TATGTGTATGGTAAGTGCCG-ACGTCATAGTGACGTTCGGCACCG-CT-C-TGACG-CTCCTTAAATG--T---TTCAGTTTT-GAAA--T---TA--C-ACCGT---------------GT---GG------------GCTA--TGA----TCAAAGATGTTTCCAATTGATATCCG---TT-GGT-GTTACCATTTCTTAATCCTTTCGATT----------G----------AT----GTTGCTAAAACTCTTTCATACA--AT--AG-ATCAAACC-ATCTGGCAATTTGTTGCACGAGTGTTA------TGAATA--AATCACTACCTGCATGTC--TGATTCGTTTAATTAAATTGG--CTCGGTCATGGTCCG---TTGAG-TTTT
gi|13 : GAGGAGTGTT-TTA-AAA-G-TTCGTGGACAAACA--TTAT---AAAAAGAGGACTAA---------CATTTATA-----------------------TAATGTATACACTCATGTAGA--TAAATTTTA-A-CTGT--AAAATATA--AA----------------ATTGATACACG-T--A-ATATT------AAC--T------T-----------TTAT---------GTT-CTCACGT-ACCTACATACACAGTACTTTG--TGCG-G---GGCAGATGCCG-ACGTcattcatg
gi|9 : GAGGTGTGTC-C-GTAAA-A-TACGTAGACAC-CATGTA-T---AAAACTTGAAACAAACGT-TTGTCATTCATA-A----------------------AATTTATATAGCC--GTATAGTTGACGTTAATACCAAC--AGAATGGTA-AA----------------AT--ATCAATA-TGAT-ACGCC------AAA--T------A-----------TTAATAAAATAT-G---C-TATTTAAACTACATGCACAAAACAATG--TACG-G---GGCAGGT-CTCGGCGTCACGCTTACTTACGACGTCAGCC-C-G-ACG-TTGCGAAAGTG--TCTG-TCGGTGCTAGGGCTAT---TT--T-ACACT--------------------GG--TA---------CT-GATG-----TCGCAG-TTTTTCAAAGTACT
gi|18 : GAAGTGTGTC-C-A-TAATG-TTTATATGCAA-CC--TT-T---ATAA--AGAA---AAAGT-ATAACAT----A-AACAATGTA-----------TATACTTTATACAGCCATGTAGA--TAATTTTTATA-CCATTAAAAACGTA--CA----------------AT--ATct
gi|8 : GGTGTGTT-C-A-AAA-AGTTTGTGACCAA-C---CT-T---AA---------TAAAACA-ACAAC-----TA-AAC--------------------AA-----------ATGTGGA--TCAATTTTATA-CATTTAA-AATGAT--AA----------------AT--ATTAAAT-TGGT-ACACCTTATATAAA--C------TA----------TTATGT-------G---CTCATGT-AATTACATACACAGTACTATG--TGTG-G---G-CAGATGCAA-ACATCATTTTGATGTTCAGCCGTG-CT-CTGAA-G-TTCCATAAGTG--TCTG-TCAGTGTT-GTGC--A---TA--C-ACCGTGTTGATACTAAC---ATAA----TTATG-----GGCTAGGTGAAAGTTCAAAG-GTTTTGA------TGTATG--TTTAGAT--TAAGCATTTAT----------GGTT----------CCATTTAATTTGT----GTTGCAAGAAGTCATTTGCACA--ATTGAGCAgcgg
gi|7 : GGTGTGTTTC-ACAAA-G-TTAATGGACAA-C---CT-TTATAAAGGCAGAACTAAACAC-ATACCATTTATATAACGTACACAGATATGTAGATATAATGTATACAGACATGTAGA--TATAATGTATA-CAGACANNNNNNNN--NNTGCTGTTCCGTTCTGTAT--ATTAAA--TGGATAAACC------GTA--T------A-----------TTAACTAGTACGTG---CTTATGT-AGCTACATATACAGCACTATA--TGCG-G---GACAGATGCCG-AAGTCATGTTGACGTTCGGTGTCG-CT-C-TGACT-CTC---CAAAGAAT-TGT------------C--T---TT--CAATGAT-----------TG--ATA-----CTAACACATGTGGTAGGTTTAAGTTCAAAG-TTTTTCAAGGTAATAACCGTTTTT-TTT-GTCAGCATTTCT----------GGTT----------
gi|16 : GGTGTGTC-C-A-AAA-A-GTTGTGGACAA-C---CT-TTATAAAACAAGAACTAAACAT-ATAGCATTTA-----------------------TATAATTCATACAGCCATTTGGA--AAAATTATATA-C-CTTAACAA-ATTTAAA----------------AT--ATCAAAT-TG
gi|11 : ATTTTACA-CCATTAA-AATGTA--AA----------------AT--ATGATAGATTGA-TCACC------GAAGAT------TAACAAGATCTATTATGT-------G---TTAATGT-AACTACATACACAGTACTATGAACATA-G-----CAGGTGCTA-ACGTCGCGGTGACGTTGA----CA-CTCC-TCACGTTTCTTTCTATG--T-T----AGGGCT-ACAC--CGTATTGAT-ACGAA-----------C---ACAATGGCTT-------------GTTGAAAA-TCTAAG-TTTTTCTAAGTCATGTC-G--TTT-TTC-G--------TTT----------GATT----------C----------AT----TTTACAAAAACTGATTCATACA--ATat
gi|3 : TACACAGTAGTATG--TTCG-G---GGCAGGTG---------------ACGCTCGGCATTG-CT-T-TGACA-CTCCTTAAGTG--T-CTTTCCGTGTT-ATGA--T---TA--C-ACCGT-----------ATTGATACTGACATGTG-----GGCTATGTGGAAGTTCAAA---------AAG-AATGTCTA--TTT-TTTTGTAAGCATTTCT----------GGTTACGATTGATTC----------AT----GTTGTGAAAACTGATTCATACACAATTGAGTATCAAACTTTTCT-------TGTTGTACTGGTGTTGCATTAATTAATA--AATTGATAT-----TGGT--TGACTCCTTTAAG----TTGT--CTTGGTCATCTTCTG---GAGAGGTTTTTTCCTTCAGAGATTTGTCTGTGC-TTTTTGTAAACCAAAGAACGATATGCTTTCGATTTTC-CAGTTTCAGACTAGATAA-TTTAATAGTCTCCAGAGGTGATTTTCAAAT-CAGTAT--GCAGGATTCAACAATTGTCCTCTCTAAGTC-TGTAACATCAGAATCAAAC----------ATGT------------------------GTCTGGTAA----AAACAcaa
gi|15 : gGCTAGGTGAAAATTCAAAG-TT-----ATGT----TCTG--TTT-G-T-GTAAGGATTTCT----------GATT----------CCGTTTG----ATTCAAGTTGAAACAATT-ATTCATACC--ATTGGGCATCTGA-CTTTCTGAC----AA---CA----TGTTG------TACATGCCAGTTACTATCATCATAT
gi|5 : ggT----------GATT----------C----------AT----GTTTC---AACTAATTCATACA--ATCAAACATCCAA--------------TGTTGCTCATGTGTTT------TGAATA--ACTTGCTAT--GGTTGTTGCTGTCACCTA-AATA---TTGT--CTTGGTCATTTTTCG---TCGAT-TGTTTTTGATAAAAAAATTGTTTG--TGCAATTATAAACGAAAGAACAATATACTTTCGATTTTC-CAGTT-CAGACTTGATTATTATAACAGTTTCCGTAGGTGGTTTTCGAATCGAA-TC--GCATAACTTAATAGTTGTCCTCTCT---GC-CGTGACGTC-AAATC--ACACATAGTATTATCT------------------------TAATG---ATCAGAAAC-GCAT--GAA-GTT--A-------TG----G-AAACAGTGA-------ATTTTAAACAATATTTC--CAT----TCACAT-TAAAATTA----TCAGAGTAAAATTGTGAA-----ATTTTGACACGGTAACCTCTTTTGTTTCTATGTTATGCCTGTATGCA
gi|2 : atttctggttccactTGCACGTGTGTTA------TGAAGA--GGTCGTTATTGACATTGC--TGACTCTTTTAAG----TTGTCTTT--GCCATCCTCCACATTG-----TTTTTCCATTAGACATTCGCCTGTGC-TATTTGTAAACTAAAGAACGATACACTTCCAGTTTTCACA-TTGCAGATTCGGTACTTTTTACAGTTTTCGCTGGCGATTTTAGAATTGAA-ACTTA-ATAATTT-AT-----CCCCCTTT---CCACGT--CGTCAGAATA--AC----------ATATTTTAGTTATCAGCAATACATACAGTTATG--------AAACAACTTGCAAATTTTGAA-------CAAT--GTTTCCATTGACGTTTAAATTTTAAG-AAGTTGAC--CTCAACGTCACATAA---ATTT----T--------A--CATATATTTTTAT-TTTACAAATTTACTCTATTTGGTTCTATGTAATGCCGGAATACATTAGTGGTATGCGATTCATCTTTCTAATGAGCT--GTGATTT
gi|17 : TAT------------------------TTATG---T----A--CAGCTTGCAGATTTT--AACCAATGCATTGCGTTGACCATGAT------AGTTTCAG-AATATGAC--TTCG---TCACATGC---AATT----gctcagcagaaagctttgttagtatgtaactataggcgtattgtcatagtttgtaaatatttttggatattatctttaaaacactacattgtatagtggtcaaatttaatttggtaaaattgcgtcacttttcctataacaaatagtgtccacgaactttatgtacacacct
gi|6 : caaaatcacacattttagtcatcagaaatgcatgcagtTG---T----AAACAACTTG-AAAT--------------------TTGCCACTGAA------ATTGTCAA-GATATGACGTCGACG--TCACGTAC---ATTT----T--------ACCAGGAAA-----ATTTCAACGTATTTAC
gi|19 : cgttttttgcgtcatcataatttcatgcagttatggaaactggctgtaaatCAG-AATATGTC--T------TCA-ATGTCATATTTCTTTT--------AACTTTAAC-----ACATTGATATGTTTATTGCTTTCGACTCTATGTAAAGCCCGTCTACGTTATGGGTATGCTATTCGTCtctattgtgtgttatttaccactggtatataccatatgtatttattctatctttcaagtgatgtccgacctgccccgcacatcgttttacgattatgtatatataggcatattttcgtaatttttcaaacaactttaaatatttatggacataagacatagtactttatagtaataaaattgaatttgatcagactgcgttatttttctaataacgcctagtgtctacgtattcaacggacacaccttg
4 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|10 ): GTACATTTTACCGGGAAAATTTCGACGTATTCAATCTGTTGTCTGTTATATACCGCTCATATATATCGTATGTATTTTTCATCTTTCTGGTGATGTCCGACTTGCCCCGCACATCGTTTTACGAGTATGCGTATATAGGCATATTCTCGTAATTTTTCAAACAATTGTTTAAATATTTACGGACATAACTTATAAGACATAGTACTTTATAGTTATAAAGTTGAATTTGAACAGATTGCGTTATTTTGCTAATAACGCCGTGTGTCTACGTATTTTACTGACACAC
Unaligned ( gi|12 ): GATTTATAACCTACCCCGCTCATATCTACGTTATTATATAATTAAAAATATATTATCATAATGATTTCGAATGATTTTTCAAATAATTACAGATATTTTTTTTTAAAAAAATACATTTTATAGTGGTCAAATTAAATTTGACAAAATTGCGTCAATTTTCCTACAACAAACAGTTCCACGAACTTTATGGACACCCCTCATAC
Unaligned ( gi|14 ): ACTATCATCATATTGATTCGAATGATTTTGTAAATAGTTCGAGATATTAGTTATAAGACATAATATTTATAGTGGTTAAATTAAATTGGACAGAATTGCATCAATTTTTGCCAATTTTCCTTCACCAATTAGTGTAACGTGACAAAATGTATGGACACACCTCGAAT
Unaligned ( gi|20 ): AAATAATTTGACAACATTCGTACATTTTCGCCAACAAAGTAGTGTCCACGAACTTTATAGATACACC
Alignments
lowQualScore : 111111111111111111111111111111111111111
lowQualScore : 1 1111111 1111 6666666666666666666666666 111111111 2222222222222222 88888888888888888888888888888888888888888888888 11 111 11 111 222 2222222222 000000000000000000000000000000000000000 11111 2222222222 555555555555555555555 1111 44444444444444 2222222 222222222222 1111 11 1 1 1 11 1111 11 9999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999 222222 5555555 2222 222222222222 11111 1 11 22
lowQualScore : 3 3 8 7 55 66 8888888 0 66 2 2222 2 1 1 5555555555555555555555555 4 0 4 777777777 4 1 6666666666666666 2 4 1 22 99999999999999999999999999999999999999999999999 5 00 55 444 4 2 3 00 66 3 55 000 000 0 5 8888888888 1 444444444444444444444444444444444444444 0 22 0 99999999 1 5 6 66666 5 0 1111111111 666666666666666666666 2222 8 77 1 77 6 1 1 66666666666666 44 4444444 4 555555555555 1 7777 1 0 9 11 1 888 0 1 1 3 3 1 0 0 0 4 3 1 2 00 6 33 0 22 8888 8 11 5555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555 1 1 333333 8 6 3333333 6 9999 555555555555 66666 11 22 99 7 0 8888 0 3 2 22 0 1 00 77
lowQualScore : . . . . .. .. ....... . .. . .... . . . ......................... . . . ......... . . ................ . . . .. ............................................... . .. .. ... . . . .. .. . .. ... ... . . .......... . ....................................... . .. . ........ . . . ..... . . .......... ..................... .... . .. . .. . . . .............. .. ....... . ............ . .... . . . .. . ... . . . . . . . . . . . . . .. . .. . .. .... . .. ........................................................................................... . . ...... . . ....... . .... ............ ..... .. .. .. . . .... . . . .. . . .. ..
lowQualScore : 6 6 2 3 55 11 8888888 4 66 0 3333 6 9 8 3333333333333333333333333 4 1 0 000000000 0 0 5555555555555555 6 4 0 11 99999999999999999999999999999999999999999999999 3 77 55 000 0 5 2 44 11 0 77 000 111 3 7 9999999999 0 666666666666666666666666666666666666666 4 44 2 66666666 0 7 3 33333 1 7 9999999999 999999999999999999999 1111 9 99 0 99 3 0 0 88888888888888 77 4444444 6 000000000000 4 0000 0 6 6 00 0 888 2 0 0 2 2 0 0 0 0 2 2 0 0 55 5 88 8 00 5555 2 00 4444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444 0 0 000000 8 7 0000000 7 5555 555555555555 77777 77 88 22 5 7 7777 3 7 8 00 0 0 88 55
consensus : GAGGTGTGTC-C-ATAAA-GTTCGTGGACA--ACC--T---T---AAAACNAGAACTAAACGT-ATAACATTTATA-AA---C-----------------TATAATTTATACAGCCATGTAGATAAAT-TTTATACNATTA-A-GAATG-TAAA----------------ATATTA-AATTGGTACACC------GAA-------------TATTAA-----TA------TG----CTTATGTAA-CTACATA--CACAGTA---C-TATGTGCGGGGCAGGTGCCGACGTCACGTTGACGTTCGGC-GTCGCTCTGACGCTCCTTAAG---TGT-CGTTCAGTG-TT-GGGN----TTACACCGT-----------CATN--GG--TA-----------GC---TAGGTGAAAGTTCAAAG-TTTTTC-AAGTAATG-TCCGTTTNTT--GTAAGCATTTCT----------GGTT----------C----------AT----GTTGCGAAAAC--TNATTCATACA--ATCGAGCATCNAACCTTTCTGACAA--TGTTGCACGTGTGTTG------TGAATAAATCGCTATC-G-CATGT--CTGACTCCT----TTAAGTTGTCTTGGTCATCTTCCG--TNGAG-TTTTTTCCATCAGAAATTCGTCTGTGCTATTTGTAAACCAAAGAACGATACACTTTCGGTTTTC-CAG-TT-CAGACTCGATAATTTTAACAGTTTCCGCAGGTGGTTTTCGAATCGAAACGCATAATTTAATAA-TTGTCCTCTCT---TCCGTGACGTCAGAATC--ACAT--AT----T------------------------TAT----------G---GAAACAGCTTGCAAATTTT--AA-CAA-----C-ATG----TTGACANTG------ANATTTTCAG-AATATGACCTCGACGTCACA-TA-CAATTTT--------AACCGTAAA-----ATTTCGACGCGTTTA--CTNCTTTCG-GTTCTATGTAACGCCCGTATACATTATAGGTATGCTATTC-ATCTTTCTAGTGAGCTGAGTGATTT
Reference ( family-213 ) : GAGGTGTGTC-C-A-AAA-GTTCGTGGACA--ACC--T---T---AAAACNAGAACTAAACGT-ATANCATTTATA-AA---C-----------------TATAATTTATACAGCCATGTAGATAAAT-TTTATACNATTA-A-GAATG-TNAA----------------ATATNA-AANTGGNACACC------GAA-------------TNTTA------T-------TG----CTNATGTAA-CTACATA--CACAGTA---C-TATGTGCGGGGCAGGTGCCGACGTCACGNTGACGTTCGGC-GTCGCTCTGACGCTCCTTAAG---TGT-TGTTCAGTG-TT-GCGC----TTNCACCGT-----------CATA--GG--TA-----------GC---TAGGTGAAAGTTCAAAG-TTTTTCAAAGTAATG-TCCGTTTNTT--GTAAGCATTTCT----------GGTT----------C----------AT----GTTGCGAAAAC--TNATTCATACA--ATCGAGCATCNAACCTTTCTGGC----TGTTGCACGNGTGTTG------TGAATAAGTCGCTATC-G-CATGT--CTGACTCCT----TTAANTTGTCTCGGTCATCTTCCG--TNGAG-TTTTTTCCATNAGANATTCGTCTGTGCTATTTGTAAACNAAAGAACGATATACTTTCGATTTTC-CAG-TT-CAGACTCGATAATTTTAACAGTTTCCGNAGGCGATTTTCGAATCGAAACGCATAATTTAATAG-TTGTCCTCTCT---NCCGTGACGTCAGAATC--ACAT--AT----T------------------------TAT----------G---NAAACAGCTTGCAAATTTT--A----------C-GTG----TTGNCANTG------ANATTTTCAG-AATATGACCNC----TCACA-TG-CAATTTT--------AACCGTAAA-----ATTTCGACACGTTTA--CTNCTTTCG-NTTCTATGTAATGCCCGTATACGTTANNGGTATGCNATTC-GTCTTTCTAATGAGCT--GTGATTT
gi|1 : GAGGTGTGTC-C-A-AAA-ATTTGTGAACA--ACT--T---T---AAAACAAGAACTAAAAAT-ATAACATTTATA-AA---C-----------------TATAATTTACACAGCCATGTATATAAAT-TTTATACAATTA-A-GAATA-TTAA----------------ATATTA-AAGTGGAACACC------AAA-------------TTTTA---------------G----CTTATGTAA-CCACATA--CACAGTA---C-TATGTATGGGATAGGTGCTCACATCATTTTGATATTCAGT-ATCACTCGAACGCTCCTTCAA---TGT-TGTTCAGTG-CT-GGGC----TTTCACGGT-----------CATAAAGGCCTA-----------GCCGCTAGGTGAAAGTTCAAAG-TTTCTCAAAGTACTG-TCTGTTTGTT--GTAAGAATTTCT----------GGTT----------C----------AT----GTTGCGAAAAT--TGATTTATGCA--ATTGAGCATCCAACCTTTCTGAC----TATTGCACCTGTGTTG------TGAATAAATTGCTATCAG-CATGT--TTGTCTCCT----TTAATTTGGTT--GTCTTCTTCTG--TGGAG-TTTTTTCTATCAGAAATCCGTC--TGCTATTTGTAAACCAAAGAACAATACACTTTCAGTTTTC-CAG-TTGCAGACTTGATAATTTTAACAGTTTCCGCAGGTAGTTTTCGAATATAAACACATAATTTGATAA-TGGCCCTCTCT---CCTGTGATGTCAAAATC--ACAT--GT----T------------------------TAT----------G---AAAACAGCTTGCGAATGTT--A----------C-A-G----TTGACATTG------ACATTTTCAG-AATATGAC--C----TCACA-TG-T-ATTTT--------AACTGTAAA-----ATGTTGGCACATTTA--CACCTTTTG-AATCAATGTAATACATGTGTACATTACAGGTGTGCTAATC-ATCTCCCTAATAAGTTGAGTGATTT
gi|10 : ATTTT--------ACCGGGAAA-----ATTTCGACGTATTCAATCTGTTGTCT-GT--TATATACCGCTCATATATATCGTATGTAT--TTTTC-ATCTTTCTGGTGA
gi|10 : gtacT-ATAAC---TATA-AAGTAC-----------------TATGTCTTATA-AGTTATGTCCGTAAATATTTAAACAATTG------TT-TGAA----------------A------AATTACGA----------GAA-------------TAT-----------------G----CCTATATA---CGCATA--CTC-GTAAAAC-GATGTGCGGGGCAAGT-CGGACATCACtgtccgacttgccccgcacatcgttttacgagtatgcgtatataggcatattctcgtaatttttcaaacaattgtttaaatatttacggacataacttataagacatagtactttatagttataaagttgaatttgaacagattgcgttattttgctaataacgccgtgtgtctacgtattttactgacacac
gi|11 : gtacattttaccgggaaaatttcgacgtattcaatctgttgtctgttatataccgctcatatatatcgtatgtatttttcatctttctgAT-TTTACACCATTA-A--AATG-TAAA----------------ATATGATAGATTGATCACC------GAAGATTAACAAGATCTATTA------TG------TG----TTAATGTAA-CTACATA--CACAGTA---C-TATGAACATAGCAGGTGCTAACGTCGCGGTGACGTT-------------GACACTCCTCACG---TTT-CTTTCTATG-TT-AGGG----CTACACCGT------------ATT--GA--TACGAACACAATGGC---TTGTTGAAAAT-CTAAG-TTTTTCTAAGTCATG-TC-GTTTTTC--GT--------TT----------GATT----------C----------AT----TTTACAAAAAC--TGATTCATACA--ATCAAaagttgaatttgaacagattgcgttattttgctaataacgccgtgtgtctacgtattttactgacacac
gi|12 : GAGGGGTGTC-C-ATAAA-GTTCGTGGA
gi|13 : gatttataacctaccccgctcatatctacgttattatataattaaaaatatattatcataatgatttcgaatgatttttcaaataattacagatatttttttttaaaaaaatacattttatagtggtcaaattaaatttgacaaaattgcgtcaattttcctacaacaaacagtGAGGAGTGTT-TTA-AAA-GTTCGTGGACA--AACATTA--T---AAAAAGAGGACTAA---------CATTTATA--------------------------TAATGTATACACTCATGTAGATAAAT-TTTA-AC-----------TG-TAAA----------------ATATAA-AATTGATACACG------TAA-------------TATTAACTT--T-------TATGTTCTCACGTAC-CTACATA--CACAGTA---C-TTTGTGCGGGGCAGATGCCGACGTatac
gi|15 : -----------GC---TAGGTGAAAATTCAA-----------AGTTATGTTCTGTTTG-T--GTAAGGATTTCT----------GATT----------CCGTTTG----ATTCAAGTTG---AAACAATTATTCATACC--ATTGGGCATCTGA-CTTTCTGACAACATGTTGTACATG
gi|16 : ggGGTGTGTC-C-A-AAA-AGTTGTGGACA--ACC--T---TTATAAAACAAGAACTAAACAT-ATAGCATTTA--------------------------TATAATTCATACAGCCATTTGGAAAAAT-TATATACC-TTA-ACAAATT-TAAA----------------ATATCA-AATTGccagttactatcatcatat
gi|17 : T--AT----T------------------------TAT----------G---TA--CAGCTTGCAGATTTT--AACCAATGCATT-GCG----TTGACCATG------ATAGTTTCAG-AATATGACTTCG---TCACA-TG-CAATTat
gi|18 : caaaatcacacattttagtcatcagaaatgcatgcagtGAAGTGTGTC-C-A-TAATGTTTATATGCA--ACC--T---T---TATA-AAGAA--AAA-GT-ATAACAT----A-AA---CAATGTA-----------TATACTTTATACAGCCATGTAGATAATT-TTTATACCATTA-A-AAACG-TACA----------------ATAT
gi|19 : CAG-AATATGTCTTCAATGTCATA-TTTC--TTTT--------AACTTTAAC-----ACATTGATATGTTTA--TTGCTTTCG-ACTCTATGTAAAGCCCGTCTACGTTATGGGTATGCTATTC-GTCgcgg
gi|2 : TGCACGTGTGTTA------TGAAGAGGTCGTTATT-GACATTG--CTGACTCTT----TTAAGTTGTCTTTGCCATCCTCCACATTG----TTTTTCCATTAGACATTCGCCTGTGCTATTTGTAAACTAAAGAACGATACACTTCCAGTTTTCACAT-TG-CAGATTCGGTACTTTTTACAGTTTTCGCTGGCGATTTTAGAATTGAAAC-------TTAATAATTTATCCCCCTT---TCCACGTCGTCAGAATA--ACAT--AT----TTTAGTTATCAGCAATACATACAGTTAT----------G----AAACAACTTGCAAATTTTGAA----------CAATG----TTTCCATTGACGTTTAAATTTTAAG-AAGTTGACCTCAACGTCACA-TA--AATTTT--------A--CATATATTTTTATTTT-ACAAATTTA--CTCTATTTG-GTTCTATGTAATGCCGGAATACATTAGTGGTATGCGATTC-ATCTTTCTAATGAGCT--GTGATTT
gi|2 : AGGTGTGTA-C-ATAAA-GTTCGTGGACA--gctcagcagaaagctttgttagtatgtaactataggcgtattgtcatagtttgtaaatatttttggatattatctttaaaacactacattgtatagtggtcaaatttaatttggtaaaattgcgtcacttttcctataacaaatagtgtccacgaactttatgtacacacct
gi|20 : tgcacgtgtgttatgaagaggtcgttattgacattgctgactcttttaagttgtctttgccatcctccacattgtttttccattagacattcgcctgtgctatttgtaaactaaagaacgatacacttccagttttcacattgcagattcggtactttttacagttttcgctggcgattttagaattgaaacttaataatttatccccctttccacgtcgtcagaataacatattttagttatcagcaatacatacagttatgaaacaacttgcaaattttgaacaatgtttccattgacgtttaaattttaagaagttgacctcaacgtcacataaattttacatatatttttattttacaaatttactctatttggttctatgtaatgccggaatacattagtggtatgcgattcatctttctaatgagctgtgatttgctcagcagaaagctttgttagtatgtaactataggcgtattgtcatagtttgtaaatatttttggatattatctttaaaacactacattgtatagtggtcaaatttaatttggtaaaattgcgtcacttttcctataacaaatagGGTGTATC-T-ATAAA-GTTCGTGGACACTACT--T---T---
gi|3 : aaataatttgacaacattcgtacattttcgccaacTA--CACAGTA---G-TATGTTCGGGGCAGGTG--------------ACGCTCGGC-ATTGCTTTGACACTCCTTAAG---TGT-CTTTCCGTG-TT-ATGA----TTACACCGT------------ATT--GA--TACTGACATGTGGGC---TATGTGGAAGTTCAAA---------AAG-AATG-TCTATTTTTTT-GTAAGCATTTCT----------GGTTACGATTGATTC----------AT----GTTGTGAAAAC--TGATTCATACACAATTGAGTATCAAACTTTTCT-------TGTTGTACTGGTGTTGCATTAATTAATAAATTGATATT-G----GT---TGACTCCT----TTAAGTTGTCTTGGTCATCTTCTG--GAGAGGTTTTTTCCTTCAGAGATTTGTCTGTGCTTTTTGTAAACCAAAGAACGATATGCTTTCGATTTTC-CAGTTT-CAGACTAGATAA-TTTAATAGTCTCCAGAGGTGATTTTCAAATCAGTATGCAGGATTCAACAA-TTGTCCTCTCTAAGTCTGTAACATCAGAATCAAACAT--GT----G------------------------TCT----------GGTAAAAACA
gi|4 : gGAGGTGT----C-A-AAA-GTGTGTGTA-------------T---AAAGCATAAACTGAACATTATAA-ATTCATA------------------------TAAAAT--ATACAGCCATATATATAAAT-TTCATACTATTA-A-GATTG-TAAA----------------ATATTA-CATTTATACACC------AAA-------------TAAAA------CAAGCAGGCA----CTAATGTTA-CTACGCA--CAAAGTAATGCGTATGTGTATGGTAAGTGCCGACGTCATAGTGACGTTCGGC-ACCGCTCTGACGCTCCTTAAA---TGT---TTCAGTT-TT-GAAA----TTACACCGT------------GTG--G----------------GC---TA--TGA----TCAAAGATGTTTCCAATTGATA-TCCG-TTGGT--GTTACCATTTCTTAATCCTTTCGATT----------G----------AT----GTTGCTAAAAC--TCTTTCATACA--AT--AG-ATCAAACC-ATCTGGCAATTTGTTGCACGAGTGTTA------TGAATAAATCACTACCTG-CATGT--CTGATTCGTTTAATTAAATTGGCTCGGTCATGGTCCG--TTGAG-TTTT
gi|5 : T----------GATT----------C----------AT----GTTTC---AAC--TAATTCATACA--ATCAAACATCCAA--------------TGTTGCTCATGTGTTT------TGAATAACTTGCTATG-G-T-TGTTGCTGTCACCT----AAATATTGTCTTGGTCATTTTTCG--TCGAT-TGTTTTTGATAAAAAAATTGTTTGTGCAATT-ATAAACGAAAGAACAATATACTTTCGATTTTC-CAG-TT-CAGACTTGATTATTATAACAGTTTCCGTAGGTGGTTTTCGAATCGAATCGCATAACTTAATAG-TTGTCCTCTCT---GCCGTGACGTCA-AATC--ACAC--ATAGTAT------------------------TATCTTAATGATCA---GAAAC-GCATG-AAGTT-----------------ATG----GAAACAGTG------A-ATTTTAAACAATATTTCCAT----TCACATTA-AAATTATCAGAGTAAAATTGTGAA-----ATTTTGACACGGTAA--CCTCTTTTG-TTTCTATGTTATGCCTGTATGCcattcatg
gi|6 : atttctggttccactCATCATAATT--TCATGCAG----T------------------------TAT----------G---GAAACTGGCTGTAAATTGT--AAACAA-----C-TTGAAATTTGCCACTG------AAATTGTCAA-GATATGACGTCGACGTCACG-TA-C-ATTTT--------ACCAGGAAA-----ATTTCAACGTATTTA--CT-CTATTGTGTGTTATTTACCACTGGTATATACCATATGTAT-TTATTCTATCTTTCAAGTGAa
gi|6 : cgttttttgcgt-------TG----CCTATATA---TACATAATCGTAAAA---C-GATGTGCGGGGCAGGT-CGGACATCAC-TTGAtgtccgacctgccccgcacatcgttttacgattatgtatatataggcatattttcgtaatttttcaaacaactttaaatatttatggacataagacatagtactttatagtaataaaattgaatttgatcagactgcgttatttttctaataacgcctagtgtctacgtattcaacggacacaccttg
gi|7 : cgttttttgcgtcatcataatttcatgcagttatggaaactggctgtaaattgtaaacaacttgaaatttgccactgaaattgtcaagatatgacgtcgacgtcacgtacattttaccaggaaaatttcaacgtatttactctattgtgtgttatttaccactggtatataccatatgtatttattctatcttGGTGTGTTTC-ACAAA-GTTAATGGACA--ACC--T---TTATAAAGGCAGAACTAAACAC-ATACCATTTATATAA---CGTACACAGATATGTAGATATAATGTATACAGACATGTAGATATAA-TGTATACAGACA-N-NNNNN-NNNNTGCTGTTCCGTTCTGTATATTA-AATGGATAAACC------GTA-------------TATTAACTAG-TACG----TG----CTTATGTAG-CTACATA--TACAGCA---C-TATATGCGGGACAGATGCCGAAGTCATGTTGACGTTCGGT-GTCGCTCTGACTCTCCA-AAGAATTGT-CTTTCAATGATT-G---------ATACTAA-----------CACA--TG--TG-----------G----TAGGTTTAAGTTCAAAG-TTTTTCAAGGTAATA-ACCGTTTTTTTTGTCAGCATTTCT----------GGTT----------tattttcgtaatttttcaaacaactttaaatatttatggacataagacatagtactttatagtaataaaattgaatttgatcagactgcgttatttttctaataacgcctagtgtctacgtattcaacggacacaccttg
gi|8 : GGTGTGTT-C-A-AAAAGTTTGTGACCA--ACC--T---T---AA---TAAAAC--AAC-----AAC-----TA-AA---C--------------------AA-----------ATGTGGATCAAT-TTTATACATTTA-A--AATG-ATAA----------------ATATTA-AATTGGTACACCTTATATAAAC------------TATTA------TG------TG----CTCATGTAA-TTACATA--CACAGTA---C-TATGTGTGGG-CAGATGCAAACATCATTTTGATGTTCAGCCGT-GCTCTGAAGTTCCATAAG---TGTCTGT-CAGTG-TT-GTGC----ATACACCGTGTTGATACTAACATA--AT--TATGG--------GC---TAGGTGAAAGTTCAAAG-GTTT------TGATG-TATGTTTAGA--TTAAGCATTTAT----------GGTT----------CCATTTAATTTGT----GTTGCAAGAAG--TCATTTGCACA--ATTGAGCA
gi|9 : GAGGTGTGTC-C-GTAAA-ATACGTAGACA--CCA--TGTAT---AAAACTTGAAACAAACGT-TTGTCATTCATA-AA-------------------------ATTTATATAGCCGTATAGTTGACG-TTAATACCA--ACA-GAATGGTAAA----------------ATATCA-ATATGATACGCC------AAA-------------TATTAATAAAATA------TG----CT-ATTTAAACTACATG--CACAAAA---C-AATGTACGGGGCAGGTCTCGGCGTCACGCTTACTTACGAC-GTCAGCCCGACGTTGCGAAAG---TGTCTG-TCGGTG-CTAGGGCTATTTTACACT-------------------GG--TA------------C---T-GATG-----TCGCAG-TTTTTCAAAGTA
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|14 ): ACTATCATCATATTGATTCGAATGATTTTGTAAATAGTTCGAGATATTAGTTATAAGACATAATATTTATAGTGGTTAAATTAAATTGGACAGAATTGCATCAATTTTTGCCAATTTTCCTTCACCAATTAGTGTAACGTGACAAAATGTATGGACACACCTCGAAT
Alignments
lowQualScore : 111111111111111111111111111111111111111
lowQualScore : 1 1111111 1111 77777777777777777777777777 111111111 2222222222222222 5555555555555555555555555555555555555555 11 111 111 1 222222222 000000000000000000000000000000000000000 1111111111 11111 2222222222 555555555555555555555 1111 1111111 333333333 2222222 222222222222 1111 11 1 1 1 1 111 11 88888888888888888888888888888888888888888888888888 777777777777777777777777 1111111 2222 222222222222 11111 1 11
lowQualScore : 4 2 5 66 66 8888888 0 66 2 2222 0 1 1 22222222222222222222222222 4 0 4 777777777 4 6666666666666666 55 0 3 0 2 0 3333333333333333333333333333333333333333 00 55 444 4 2 3 99 1 66 3 55 000 1 0 5 000000000 3 111111111111111111111111111111111111111 0 22 33 777 0 8888888888 5 0 66666 1 0 1111111111 666666666666666666666 2222 8 77 1 77 6 1 3333333 111111111 3 4444444 555555555555 1 7777 1 0 3 11 1 888 0 0 0 3 3 0 0 0 0 4 3 0 00 6 33 0 0 444 44 8 11 55555555555555555555555555555555555555555555555555 3 3 888888888888888888888888 1 8 6 2222222 5 2222 555555555555 66666 11 333 99 7 0 7777 2 3 0 8 88
lowQualScore : . . . .. .. ....... . .. . .... . . . .......................... . . . ......... . ................ .. . . . . . ........................................ .. .. ... . . . .. . .. . .. ... . . . ......... . ....................................... . .. .. ... . .......... . . ..... . . .......... ..................... .... . .. . .. . . ....... ......... . ....... ............ . .... . . . .. . ... . . . . . . . . . . . . .. . .. . . ... .. . .. .................................................. . . ........................ . . . ....... . .... ............ ..... .. ... .. . . .... . . . . ..
lowQualScore : 4 2 4 11 11 8888888 4 66 0 3333 9 9 8 44444444444444444444444444 4 1 0 000000000 0 5555555555555555 55 8 4 1 2 1 6666666666666666666666666666666666666666 77 55 000 0 5 2 55 7 11 0 77 000 4 3 7 000000000 0 666666666666666666666666666666666666666 4 44 44 000 1 6666666666 7 7 33333 6 7 9999999999 999999999999999999999 1111 9 99 0 99 3 0 2222222 888888888 7 4444444 000000000000 4 0000 4 6 8 00 0 888 2 2 8 2 2 2 0 0 0 2 2 2 55 5 88 8 0 000 22 2 00 22222222222222222222222222222222222222222222222222 5 2 444444444444444444444444 0 8 7 7777777 7 1111 555555555555 77777 77 555 22 5 7 2222 2 7 0 0 00
consensus : GAGGTGTGTC-CANAAAGTTCGTGGACA--ACC--T---T---AAAACNAGAACTAAACGT-ATAACATTTATA-AA---C-----------------TATAATTTATACAGCCATGTAGATAAAT-TTTATACNATTA-A-GAATG-TAAA----------------ATAT--TAAATTGATACACCGAATAT----TA--A----------TA-----TG--C------TT-ATGTAA-CTACATA--CACAGTA---C-TATGTGCGGGGCAGGTGCCGACGTCACGTTGACGTTCGGC-GTCGCTCTGACGCTCCTTAAG---TGTCTTTCAGTG-TTGGG-----NTTACACCGT-----------CATN--GG--TA-----------GC---TAGGTGAAAGTTCAAAG-T-TTTTC-AA-G-TAATG-TCCGTTTNTT--GTAAGCATTTCT----------GGTT----------C----------AT----GTTGCGAAAAC--TNATTCATACA--ATCGAGCATCNAACCTTTCTGACA--A--TGTTGCACGTGTGTTG------TGAATAAATCGCTATC-G-CATGT--CTGACTCCT----TTAAGTTGTCTTGGTCATCTTCCG--TNGAG-TTTTTTCCATCAGAAATTCGTCTGTGCTATTTGTAAACCAAAGAACGATACACTTTCGGTTTTC-CAG-TT-CAGACTCGATAATTTTAACAGTTTCCGCAGGTGGTTTTCGAATCGAAACGCATAATTTAATAA-TTGTCCTCTCT---TCCGTGACGTCAGAATC--ACAT--AT----TT------------AT----------G-----------G---AAACAGCTTGCAAATTTT-AA-C-AA--CGTT-C-G----TTGACANTGANATTTTCAG-AATATGACTTCGACGTCACA-TA-CAATTTT--------AACCGTAAA-----ATTTCGACGCGTTTA--CTNCTTTCG-GTTCTATGTAACGCCCGTATACATTATAGGTATGCTATTC-ATCTTTCTAGTGAGCTGAGTGATTT
Reference ( family-213 ) : GAGGTGTGTC-CATAAAGTTCGTGGACA--ACC--T---T---AAAACNAGAACTAAACGT-ATAACATTTATA-AA---C-----------------TATAATTTATACAGCCATGTAGATAAAT-TTTATACNATTA-A-GAATG-TAAA----------------ATAT--TAAATTGGTACACCGAATAT----TA--A----------TA-----TG--C------TT-ATGTAA-CTACATA--CACAGTA---C-TATGTGCGGGGCAGGTGCCGACGTCACGTTGACGTTCGGC-GTCGCTCTGACGCTCCTTAAG---TGTCGTTCAGTG-TTGGG-----NTTACACCGT-----------CATN--GG--TA-----------GC---TAGGTGAAAGTTCAAAG-T-TTTTC-AA-G-TAATG-TCCGTTTNTT--GTAAGCATTTCT----------GGTT----------C----------AT----GTTGCGAAAAC--TNATTCATACA--ATCGAGCATCNAACCTTTCTGACA--A--TGTTGCACGTGTGTTG------TGAATAAATCGCTATC-G-CATGT--CTGACTCCT----TTAAGTTGTCTTGGTCATCTTCCG--TNGAG-TTTTTTCCATCAGAAATTCGTCTGTGCTATTTGTAAACCAAAGAACGATACACTTTCGGTTTTC-CAG-TT-CAGACTCGATAATTTTAACAGTTTCCGCAGGTGGTTTTCGAATCGAAACGCATAATTTAATAA-TTGTCCTCTCT---TCCGTGACGTCAGAATC--ACAT--AT----TT------------AT----------G-----------G---AAACAGCTTGCAAATTTT-AA-C-AA--CAT----G----TTGACANTGANATTTTCAG-AATATGACCTCGACGTCACA-TA-CAATTTT--------AACCGTAAA-----ATTTCGACGCGTTTA--CTNCTTTCG-GTTCTATGTAACGCCCGTATACATTATAGGTATGCTATTC-ATCTTTCTAGTGAGCTGAGTGATTT
gi|1 : GAGGTGTGTC-CA-AAAATTTGTGAACA--ACT--T---T---AAAACAAGAACTAAAAAT-ATAACATTTATA-AA---C-----------------TATAATTTACACAGCCATGTATATAAAT-TTTATACAATTA-A-GAATA-TTAA----------------ATAT--TAAAGTGGAACACCAAATTT----TA---------------------G--C------TT-ATGTAA-CCACATA--CACAGTA---C-TATGTATGGGATAGGTGCTCACATCATTTTGATATTCAGT-ATCACTCGAACGCTCCTTCAA---TGTTGTTCAGTG-CTGGG-----CTTTCACGGT-----------CATAAAGGCCTA-----------GCCGCTAGGTGAAAGTTCAAAG-T-TTCTC-AAAG-TACTG-TCTGTTTGTT--GTAAGAATTTCT----------GGTT----------C----------AT----GTTGCGAAAAT--TGATTTATGCA--ATTGAGCATCCAACCTTTCTGAC------TATTGCACCTGTGTTG------TGAATAAATTGCTATCAG-CATGT--TTGTCTCCT----TTAATTTGGTT--GTCTTCTTCTG--TGGAG-TTTTTTCTATCAGAAATCCGTCTG--CTATTTGTAAACCAAAGAACAATACACTTTCAGTTTTC-CAG-TTGCAGACTTGATAATTTTAACAGTTTCCGCAGGTAGTTTTCGAATATAAACACATAATTTGATAA-TGGCCCTCTCT---CCTGTGATGTCAAAATC--ACAT--GT----TT------------AT----------G-----------A---AAACAGCTTGCGAATGTT--A-C-A----------G----TTGACATTGACATTTTCAG-AATATGACC------TCACA-TG-T-ATTTT--------AACTGTAAA-----ATGTTGGCACATTTA--CACCTTTTG-AATCAATGTAATACATGTGTACATTACAGGTGTGCTAATC-ATCTCCCTAATAAGTTGAGTGATTT
gi|10 : -TA-CA-TTTT--------ACCGGGAAA-----ATTTCGACGTATTCAATCTGTTGTCT-GT--TATATACCGCTCATATATATCGTATGTAT--TTTTC-ATCTTTCTGGTGA
gi|10 : gT-ATAAC---TATA-AAGTAC-----------------TATGTCTTATA-AGTTATGTCCGTAAATATTTAAACAATTG------TT-TGAA----------------AAAT--TA-----------CGAG--------A--A----------TA-----TG--C------CT-ATATA---CGCATA--CTC-GTAAAAC-GATGTGCGGGGCAAGT-CGGACATCACtgtccgacttgccccgcacatcgttttacgagtatgcgtatataggcatattctcgtaatttttcaaacaattgtttaaatatttacggacataacttataagacatagtactttatagttataaagttgaatttgaacagattgcgttattttgctaataacgccgtgtgtctacgtattttactgacacac
gi|11 : gtacattttaccgggaaaatttcgacgtattcaatctgttgtctgttatataccgctcatatatatcgtatgtatttttcatctttctgAT-TTTACACCATTA-A--AATG-TAAA----------------ATATGATAGATTGAT-CACCGAAGAT----TA--ACAAGATCTATTA-----TG--TG-----TTAATGTAA-CTACATA--CACAGTA---C-TATGAACATAGCAGGTGCTAACGTCGCGGTGACGT-------------TGACACTCCTCACG---TTTCTTTCTATG-TTAGG-----GCTACACCGT------------ATT--GA--TACGAACACAATGGC---TTGTTGAAAA-TCTAAG-T-TTTTCTAA-G-TCATG-T-CGTTTTTC--G--------TTT----------GATT----------C----------AT----TTTACAAAAAC--TGATTCATACA--ATCAAaagttgaatttgaacagattgcgttattttgctaataacgccgtgtgtctacgtattttactgacacac
gi|13 : GAGGAGTGTT-TTAAAAGTTCGTGGACA--AACATTA--T---AAAAAGAGGACTAA---------CATTTATA--------------------------TAATGTATACACTCATGTAGATAAAT-TTTA-AC-----------TG-TAAA----------------ATAT--AAAATTGATACACGTAATAT----TA--ACTTT------TA-----TGTTC------TC-ACGTAC-CTACATA--CACAGTA---C-TTTGTGCGGGGCAGATGCCGACGT
gi|15 : -----------GC---TAGGTGAAAATTCAAAG-T-T------------ATGTTCTGTTTG-T--GTAAGGATTTCT----------GATT----------CCGTTTG----ATTCAAGTTG---AAACAATTATTCATACC--ATTGGGCATCTGA-CTTTCTGACAACA--TGTTGTACATG
gi|16 : ggGGTGTGTC-CAAAAAGTT-GTGGACA--ACC--T---TTATAAAACAAGAACTAAACAT-ATAGCATTTATA--------------------------TAATTCATACAGCCATTTGGAAAAAT-TATATACC-TTA-ACAAATT-TAAA----------------ATAT--CAAATTGATccagttactatcatcatat
gi|17 : T--AT----TT------------AT----------G-----------T---A--CAGCTTGCAGATTTT-AA-CCAATGCATTGC-G----TTGACCATGATAGTTTCAG-AATATGACTT---CGTCACA-TG-CAATT
gi|18 : caaaatcacacattttagtcatcagaaatgcatgcagtGAAGTGTGTC-CATAATGTTTATATGCA--ACC--T---T---TATA-AAGAA--AAA-GT-ATAACAT----A-AA---CAATGTA-----------TATACTTTATACAGCCATGTAGATAATT-TTTATACCATTA-A-AAACG-TACA----------------ATAT--
gi|19 : CAG-AATATGTCTTCAATGTCATA-TTTC--TTTT--------AACTTTAAC-----ACATTGATATGTTTA--TTGCTTTCG-ACTCTATGTAAAGCCCGTCTACGTTATGGGTATGCTATTC-GTCgcgg
gi|2 : TGCACGTGTGTTA------TGAAGAGGTCGTTATT-GACATTG--CTGACTCTT----TTAAGTTGTCTTTGCCATCCTCCACATTG----TTTTTCCATTAGACATTCGCCTGTGCTATTTGTAAACTAAAGAACGATACACTTCCAGTTTTCACAT-TG-CAGATTCGGTACTTTTTACAGTTTTCGCTGGCGATTTTAGAATTGAAAC-------TTAATAATTTATCCCCCTT---TCCACGTCGTCAGAATA--ACAT--AT----TTTAGTTATCAGCAAT----------ACATACAGTTATG---AAACAACTTGCAAATTTTGAA-C-AA--TGTTTCCA----TTGACGTTTAAATTTTAAG-AAGTTGACCTCAACGTCACA-TA--AATTTT--------A--CATATATTTTTATTTT-ACAAATTTA--CTCTATTTG-GTTCTATGTAATGCCGGAATACATTAGTGGTATGCGATTC-ATCTTTCTAATGAGCT--GTGATTT
gi|20 : GGTGTATC-TATAAAGTTCGTGGACACTACT--T---T---gctcagcagaaagctttgttagtatgtaactataggcgtattgtcatagtttgtaaatatttttggatattatctttaaaacactacattgtatagtggtcaaatttaatttggtaaaattgcgtcacttttcctataacaaatagtgtccacgaactttatgtacacacct
gi|3 : aaataatttgacaacattcgtacattttcgccaacTA--CACAGTA---G-TATGTTCGGGGCAGGTG--------------ACGCTCGGC-ATTGCTTTGACACTCCTTAAG---TGTCTTTCCGTG-TTATG-----ATTACACCGT------------ATT--GA--TACTGACATGTGGGC---TATGTGGAAGTTCAAA----------AA-G--AATG-TCTATTTTTTT-GTAAGCATTTCT----------GGTTACGATTGATTC----------AT----GTTGTGAAAAC--TGATTCATACACAATTGAGTATCAAACTTTTCT---------TGTTGTACTGGTGTTGCATTAATTAATAAATTGATATT-G----GT---TGACTCCT----TTAAGTTGTCTTGGTCATCTTCTG--GAGAGGTTTTTTCCTTCAGAGATTTGTCTGTGCTTTTTGTAAACCAAAGAACGATATGCTTTCGATTTTC-CAGTTT-CAGACTAGATAA-TTTAATAGTCTCCAGAGGTGATTTTCAAATCAGTATGCAGGATTCAACAA-TTGTCCTCTCTAAGTCTGTAACATCAGAATCAAACAT--GT----GT------------CT----------G-----------GTAAAAACA
gi|4 : gGAGGTGT----CA-AAAGTGTGTGTA-------------T---AAAGCATAAACTGAACATTATAA-ATTCATA------------------------TAAAAT--ATACAGCCATATATATAAAT-TTCATACTATTA-A-GATTG-TAAA----------------ATAT--TACATTTATACACCAAATAA-----A--A----------CA-----AG--CAGGCACTA-ATGTTA-CTACGCA--CAAAGTAATGCGTATGTGTATGGTAAGTGCCGACGTCATAGTGACGTTCGGC-ACCGCTCTGACGCTCCTTAAA---TGT--TTCAGTT-TTGAA-----ATTACACCGT------------GTG--G----------------GC---TA--TGA----TCAAAGATGTTTCC-AA-T-TGATA-TCCG-TTGGT--GTTACCATTTCTTAATCCTTTCGATT----------G----------AT----GTTGCTAAAAC--TCTTTCATACA--AT--AG-ATCAAACC-ATCTGGCA--ATTTGTTGCACGAGTGTTA------TGAATAAATCACTACCTG-CATGT--CTGATTCGTTTAATTAAATTGGCTCGGTCATGGTCCG--TTGAG-TTTT
gi|5 : T----------GATT----------C----------AT----GTTTC---AAC--TAATTCATACA--ATCAAACATC------------CA--A--TGTTGCTCATGTGTTT------TGAATAACTTGCTATG-G-T-TGTTGCTGTCACCT----AAATATTGTCTTGGTCATTTTTCG--TCGAT-TGTTTTTGATAAAAAAATTGTTTGTGCAATT-ATAAACGAAAGAACAATATACTTTCGATTTTC-CAG-TT-CAGACTTGATTATTATAACAGTTTCCGTAGGTGGTTTTCGAATCGAATCGCATAACTTAATAG-TTGTCCTCTCT---GCCGTGACGTCA-AATC--ACAC--ATAGTATT------------ATCTTAATGATCA-----------G---AAAC-GCATG-AAGTT-------------AT----G----GAAACAGTGA-ATTTTAAACAATAT---TTCCAT-TCACATTA-AAATTATCAGAGTAAAATTGTGAA-----ATTTTGACACGGTAA--CCTCTTTTG-TTTCTATGTTATGCCTGTATGCAcattcatg
gi|6 : atttctggttccactTTTTT---TGCGT--CATCATAATT--TCATGCAG----TT------------AT----------G-----------G---AAACTGGCTGTAAATTGT-AAAC-AA--CTT----GAAATTTGCCACTGAAATTGTCAA-GATATGACGTCGACGTCACG-TA-C-ATTTT--------ACCAGGAAA-----ATTTCAACGTATTTA--CT-CTATTGTGTGTTATTTACCACTGGTATATACCATATGTAT-TTATTCTATCTTTCAAGTGA
gi|6 : cgA--A----------TA-----TG--C------CT-ATATA---TACATAATCGTAAAA---C-GATGTGCGGGGCAGGT-CGGACATCAC-TTGAtgtccgacctgccccgcacatcgttttacgattatgtatatataggcatattttcgtaatttttcaaacaactttaaatatttatggacataagacatagtactttatagtaataaaattgaatttgatcagactgcgttatttttctaataacgcctagtgtctacgtattcaacggacacaccttg
gi|7 : cgttttttgcgtcatcataatttcatgcagttatggaaactggctgtaaattgtaaacaacttgaaatttgccactgaaattgtcaagatatgacgtcgacgtcacgtacattttaccaggaaaatttcaacgtatttactctattgtgtgttatttaccactggtatataccatatgtatttattctatcttGGTGTGTTTCACAAAGTTAATGGACA--ACC--T---TTATAAAGGCAGAACTAAACAC-ATACCATTTATATAA---CGTACACAGATATGTAGATATAATGTATACAGACATGTAGATATAA-TGTATACAGACA-N-NNNNN-NNNNTGCTGTTCCGTTCTGTATAT--TAAATGGATAAACCGTATAT----TA--ACTAG------TACG---TG--C------TT-ATGTAG-CTACATA--TACAGCA---C-TATATGCGGGACAGATGCCGAAGTCATGTTGACGTTCGGT-GTCGCTCTGACTCTCCA-AAGAATTGTCTTTCAATGATTG----------ATACTAA-----------CACA--TG--TG-----------G----TAGGTTTAAGTTCAAAG-T-TTTTC-AA-GGTAATA-ACCGTTTTTTTTGTCAGCATTTCT----------GGTT----------ttcgtaatttttcaaacaactttaaatatttatggacataagacatagtactttatagtaataaaattgaatttgatcagactgcgttatttttctaataacgcctagtgtctacgtattcaacggacacaccttg
gi|8 : GGTGTGTT-CAAAAAGTTTGTGACCA--ACC--T---T---AA---TAAAAC--AAC-----AAC-----TA-AA---C--------------------AA-----------ATGTGGATCAAT-TTTATACATTTA-A--AATG-ATAA----------------ATAT--TAAATTGGTACACCTTATATAAACTATTA----------TG-----TG--C------TC-ATGTAA-TTACATA--CACAGTA---C-TATGTGTGGG-CAGATGCAAACATCATTTTGATGTTCAGCCGT-GCTCTGAAGTTCCATAAG---TGTCTGTCAGTG-TTGTG-----CATACACCGTGTTGATACTAACATA--AT--TATGG--------GC---TAGGTGAAAGTTCAAAG-G-TTT--------TGATG-TATGTTTAGA--TTAAGCATTTAT----------GGTT----------CCATTTAATTTGT----GTTGCAAGAAG--TCATTTGCACA--ATTGAGCA
gi|9 : GAGGTGTGTC-CGTAAAATACGTAGACA--CCA--TGTAT---AAAACTTGAAACAAACGT-TTGTCATTCATA-AA-------------------------ATTTATATAGCCGTATAGTTGACG-TTAATACCA--ACA-GAATGGTAAA----------------ATAT--CAATATGATACGCCAAATAT----TA--A----------TAAAATATG--C------T--ATTTAAACTACATG--CACAAAA---C-AATGTACGGGGCAGGTCTCGGCGTCACGCTTACTTACGAC-GTCAGCCCGACGTTGCGAAAG---TGTCTGTCGGTG-CTAGGGCTATTTTACAC-----------------T--GG--TA------------C---T-GATG-----TCGCAG-T-TTTTCAAA-G-TA
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|12 ): GATTTATAACCTACCCCGCTCATATCTACGTTATTATATAATTAAAAATATATTATCATAATGATTTCGAATGATTTTTCAAATAATTACAGATATTTTTTTTTAAAAAAATACATTTTATAGTGGTCAAATTAAATTTGACAAAATTGCGTCAATTTTCCTACAACAAACAGTTCCACGAACTTTATGGACACCCCTCATAC
Unaligned ( gi|14 ): ACTATCATCATATTGATTCGAATGATTTTGTAAATAGTTCGAGATATTAGTTATAAGACATAATATTTATAGTGGTTAAATTAAATTGGACAGAATTGCATCAATTTTTGCCAATTTTCCTTCACCAATTAGTGTAACGTGACAAAATGTATGGACACACCTCGAAT
Alignments
lowQualScore : 111111111111111111111111111111111111111
lowQualScore : 1111111 1111 77777777777777777777777777 333333333333333333333333333333333333333333 11111 5555555555555555555555555555555555555555 11 111 111 222222222 000000000000000000000000000000000000000 1111111111 11111 2222222222 555555555555555555555 1111 1111111 333333333 2222222 222222222222 1111 11 1 1 1 1 111 11 88888888888888888888888888888888888888888888888888 8888888888888888888888 11111 2222 222222222222 11111 1 11
lowQualScore : 4 5 5 66 66 8888888 0 66 2 2222 0 1 1 22222222222222222222222222 4 0 3 3 55 111111111111111111111111111111111111111111 5555 00000 66 0 5555555555555555555555555555555555555555 2 4 00 55 444 4 2 3 99 66 3 55 000 0 5 000000000 3 111111111111111111111111111111111111111 0 22 0 777 0 8888888888 5 6 66666 5 0 1111111111 666666666666666666666 2222 8 77 1 77 6 1 3333333 111111111 3 4444444 555555555555 1 7777 1 0 3 11 1 888 0 0 0 3 3 0 0 0 0 4 3 0 00 6 33 0 0 444 44 8 11 55555555555555555555555555555555555555555555555555 3 3 1 9999999999999999999999 1 8 6 11111 5 2222 555555555555 66666 11 333 99 7 0 7777 2 3 0 8 88
lowQualScore : . . . .. .. ....... . .. . .... . . . .......................... . . . . .. .......................................... .... ..... .. . ........................................ . . .. .. ... . . . .. .. . .. ... . . ......... . ....................................... . .. . ... . .......... . . ..... . . .......... ..................... .... . .. . .. . . ....... ......... . ....... ............ . .... . . . .. . ... . . . . . . . . . . . . .. . .. . . ... .. . .. .................................................. . . . ...................... . . . ..... . .... ............ ..... .. ... .. . . .... . . . . ..
lowQualScore : 4 3 4 11 11 8888888 4 66 0 3333 9 9 8 44444444444444444444444444 4 1 6 6 99 444444444444444444444444444444444444444444 6666 00000 11 9 7777777777777777777777777777777777777777 7 4 77 55 000 0 5 2 55 11 0 77 000 3 7 000000000 0 666666666666666666666666666666666666666 4 44 2 000 1 6666666666 7 3 33333 1 7 9999999999 999999999999999999999 1111 9 99 0 99 3 0 2222222 888888888 7 4444444 000000000000 4 0000 4 6 8 00 0 888 2 2 8 2 2 2 0 0 0 2 2 2 55 5 88 8 0 000 22 2 00 22222222222222222222222222222222222222222222222222 5 2 0 4444444444444444444444 0 8 7 33333 7 1111 555555555555 77777 77 555 22 5 7 2222 2 7 0 0 00
consensus : GAGGTGTGTC-CANAAAGTTCGTGGACA--ACC--T---T---AAAACNAGAACTAAACGT-ATAACATTTATA-AA---C-----------------TATAATTTATACAGCCATGTAGATAAAT-TTTAT-ACNATTA-A-G----A------ATG-T--A-AA----------------ATAT--T-AAA-----TTGATACAC--CGAATAT----TA--A----------TA-----TG--C------TTA-TGTAA-CTACATA--CACAGTA---C-TATGTGCGGGGCAGGTGCCGACGTCACGTTGACGTTCGGC-GTCGCTCTGACGCTCCTTAAG---TGTCTTTCAGTG-TTGGGN-----TTACACCGT-----------CATN--GG--TA-----------GC---TAGGTGAAAGTTCAAAG-T-TTTTC-AA-G-TAATG-TCCGTTTNTT--GTAAGCATTTCT----------GGTT----------C----------AT----GTTGCGAAAAC--TNATTCATACA--ATCGAGCATCNAACCTTTCTGACA--A--TGTTGCACGTGTGTTG------TGAATAAATCGCTATC-G-CATGT--CTGACTCCT----TTAAGTTGTCTTGGTCATCTTCCG--TNGAG-TTTTTTCCATCAGAAATTCGTCTGTGCTATTTGTAAACCAAAGAACGATACACTTTCGGTTTTC-CAG-TT-CAGACTCGATAATTTTAACAGTTTCCGCAGGTGGTTTTCGAATCGAAACGCATAATTTAATAA-TTGTCCTCTCT---TCCGTGACGTCAGAATC--ACAT--AT----TT------------AT----------G-----------G---AAACAGCTTGCAAATTTT-AA-C-AACG--TT--CG----TTGACANTGANATTTTCAG-AATATGACTTCGACGTCACA-TA-CAATTTT--------AACCGTAAA-----ATTTCGACGCGTTTA--CTNCTTTCG-GTTCTATGTAACGCCCGTATACATTATAGGTATGCTATTC-ATCTTTCTAGTGAGCTGAGTGATTT
Reference ( family-213 ) : GAGGTGTGTC-CANAAAGTTCGTGGACA--ACC--T---T---AAAACNAGAACTAAACGT-ATAACATTTATA-AA---C-----------------TATAATTTATACAGCCATGTAGATAAAT-TTTAT-ACNATTA-A-G----A------ATG-T--A-AA----------------ATAT--T-AAA-----TTGATACAC--CGAATAT----TA--A----------TA-----TG--C------TTA-TGTAA-CTACATA--CACAGTA---C-TATGTGCGGGGCAGGTGCCGACGTCACGTTGACGTTCGGC-GTCGCTCTGACGCTCCTTAAG---TGTCTTTCAGTG-TTGGGN-----TTACACCGT-----------CATN--GG--TA-----------GC---TAGGTGAAAGTTCAAAG-T-TTTTC-AA-G-TAATG-TCCGTTTNTT--GTAAGCATTTCT----------GGTT----------C----------AT----GTTGCGAAAAC--TNATTCATACA--ATCGAGCATCNAACCTTTCTGACA--A--TGTTGCACGTGTGTTG------TGAATAAATCGCTATC-G-CATGT--CTGACTCCT----TTAAGTTGTCTTGGTCATCTTCCG--TNGAG-TTTTTTCCATCAGAAATTCGTCTGTGCTATTTGTAAACCAAAGAACGATACACTTTCGGTTTTC-CAG-TT-CAGACTCGATAATTTTAACAGTTTCCGCAGGTGGTTTTCGAATCGAAACGCATAATTTAATAA-TTGTCCTCTCT---TCCGTGACGTCAGAATC--ACAT--AT----TT------------AT----------G-----------G---AAACAGCTTGCAAATTTT-AA-C-AACG--TT--CG----TTGACANTGANATTTTCAG-AATATGACTTCGACGTCACA-TA-CAATTTT--------AACCGTAAA-----ATTTCGACGCGTTTA--CTNCTTTCG-GTTCTATGTAACGCCCGTATACATTATAGGTATGCTATTC-ATCTTTCTAGTGAGCTGAGTGATTT
gi|1 : GAGGTGTGTC-CAAAAA-TTTGTGAACA--ACT--T---T---AAAACAAGAACTAAAAAT-ATAACATTTATA-AA---C-----------------TATAATTTACACAGCCATGTATATAAAT-TTTAT-ACAATTA-A-G----A------ATA-T--T-AA----------------ATAT--T-AAA-----GTGGAACAC--CAAATTT----TA---------------------G--C------TTA-TGTAA-CCACATA--CACAGTA---C-TATGTATGGGATAGGTGCTCACATCATTTTGATATTCAGT-ATCACTCGAACGCTCCTTCAA---TGTTGTTCAGTG-CTGGGC-----TTTCACGGT-----------CATAAAGGCCTA-----------GCCGCTAGGTGAAAGTTCAAAG-T-TTCTC-AAAG-TACTG-TCTGTTTGTT--GTAAGAATTTCT----------GGTT----------C----------AT----GTTGCGAAAAT--TGATTTATGCA--ATTGAGCATCCAACCTTTCTGAC------TATTGCACCTGTGTTG------TGAATAAATTGCTATCAG-CATGT--TTGTCTCCT----TTAATTTGGTT--GTCTTCTTCTG--TGGAG-TTTTTTCTATCAGAAATCCGTCTG--CTATTTGTAAACCAAAGAACAATACACTTTCAGTTTTC-CAG-TTGCAGACTTGATAATTTTAACAGTTTCCGCAGGTAGTTTTCGAATATAAACACATAATTTGATAA-TGGCCCTCTCT---CCTGTGATGTCAAAATC--ACAT--GT----TT------------AT----------G-----------A---AAACAGCTTGCGAATGTT--A-C-A----------G----TTGACATTGACATTTTCAG-AATATGACC------TCACA-TG-T-ATTTT--------AACTGTAAA-----ATGTTGGCACATTTA--CACCTTTTG-AATCAATGTAATACATGTGTACATTACAGGTGTGCTAATC-ATCTCCCTAATAAGTTGAGTGATTT
gi|10 : -TA-CA-TTTT--------ACCGGGAAA-----ATTTCGACGTATTCAATCTGTTGTCT-GT--TATATACCGCTCATATATATCGTATGTAT--TTTTC-ATCTTTCTGGTGA
gi|10 : gT-ATAAC---TATA-AAGTAC-----------------TATGTCTTATA-AGTTATGTCCGTAAATATTTAA-ACAATTG----------------TT-T--G-AA----------------AAAT--T-A------------------CGAG--------A--A----------TA-----TG--C------CTA-TATA---CGCATA--CTC-GTAAAAC-GATGTGCGGGGCAAGT-CGGACATCACtgtccgacttgccccgcacatcgttttacgagtatgcgtatataggcatattctcgtaatttttcaaacaattgtttaaatatttacggacataacttataagacatagtactttatagttataaagttgaatttgaacagattgcgttattttgctaataacgccgtgtgtctacgtattttactgacacac
gi|11 : gtacattttaccgggaaaatttcgacgtattcaatctgttgtctgttatataccgctcatatatatcgtatgtatttttcatctttctgAT-TTTAC-ACCATTA-A------A------ATG-T--A-AA----------------ATATGAT-AGA-----TTGAT-CAC--CGAAGAT----TA--ACAAGATCTATTA-----TG--TG-----TTAATGTAA-CTACATA--CACAGTA---C-TATGAACATAGCAGGTGCTAACGTCGCGGTGACGTT-------------GACACTCCTCACG---TTTCTTTCTATG-TTAGGG-----CTACACCGT------------ATT--GA--TACGAACACAATGGC---TTGTTGAAAAT-CTAAG-T-TTTTCTAA-G-TCATG-TC-GTTTTTC--GT--------TT----------GATT----------C----------AT----TTTACAAAAAC--TGATTCATACA--ATCAAaagttgaatttgaacagattgcgttattttgctaataacgccgtgtgtctacgtattttactgacacac
gi|13 : GAGGAGTGTT-TTAAAAGTTCGTGGACA--AACATTA--T---AAAAAGAGGACTAA---------CATTTATA--------------------------TAATGTATACACTCATGTAGATAAAT-TTTA--AC---------------------TG-T--A-AA----------------ATAT--A-AAA-----TTGATACAC--GTAATAT----TA--ACTTT------TA-----TGTTC------TCA-CGTAC-CTACATA--CACAGTA---C-TTTGTGCGGGGCAGATGCCGACGT
gi|15 : -----------GC---TAGGTGAAAATTCAAAG-T-T------------ATGTTCTGTTTG-T--GTAAGGATTTCT----------GATT----------CCGTTTG----ATTCAAGTTG---AAACAATTATTCATACC--ATTGGGCATCTGA-CTTTCTGACAACA--TGTTGTACATG
gi|16 : ggGGTGTGTC-CAAAAAGTT-GTGGACA--ACC--T---TTATAAAACAAGAACTAAACAT-ATAGCATTTATA--------------------------TAATTCATACAGCCATTTGGAAAAAT-TATAT-ACC-TTA-ACA----A------ATT-T--A-AA----------------ATAT--C-AAA-----TTGATccagttactatcatcatat
gi|17 : T--AT----TT------------AT----------G-----------T---A--CAGCTTGCAGATTTT-AA-CCAATGCATTG-CG----TTGACCATGATAGTTTCAG-AATATGACTT---CGTCACA-TG-CAATT
gi|18 : caaaatcacacattttagtcatcagaaatgcatgcagtGAAGTGTGTC-CATAATGTTTATATGCA--ACC--T---T---TATA-AAGAA--AAA-GT-ATAACAT----A-AA---CAATGTA-----------TATACTTTATACAGCCATGTAGATAATT-TTTAT-ACCATTA-A-A----A------ACG-T--A-CA----------------ATAT--
gi|19 : CAG-AATATGTCTTCAATGTCATA-TTTC--TTTT--------AACTTTAAC-----ACATTGATATGTTTA--TTGCTTTCG-ACTCTATGTAAAGCCCGTCTACGTTATGGGTATGCTATTC-GTCgcgg
gi|2 : TGCACGTGTGTTA------TGAAGAGGTCGTTATT-GACATTG--CTGACTCTT----TTAAGTTGTCTTTGCCATCCTCCACATTG----TTTTTCCATTAGACATTCGCCTGTGCTATTTGTAAACTAAAGAACGATACACTTCCAGTTTTCACAT-TG-CAGATTCGGTACTTTTTACAGTTTTCGCTGGCGATTTTAGAATTGAAAC-------TTAATAATTTATCCCCCTT---TCCACGTCGTCAGAATA--ACAT--AT----TTTAGTTATCAGCAAT----------ACATACAGTTATG---AAACAACTTGCAAATTTTGAA-C-AATG--TTTCCA----TTGACGTTTAAATTTTAAG-AAGTTGACCTCAACGTCACA-TA--AATTTT--------A--CATATATTTTTATTTT-ACAAATTTA--CTCTATTTG-GTTCTATGTAATGCCGGAATACATTAGTGGTATGCGATTC-ATCTTTCTAATGAGCT--GTGATTT
gi|20 : GGTGTATC-TATAAAGTTCGTGGACACTACT--T---T---gctcagcagaaagctttgttagtatgtaactataggcgtattgtcatagtttgtaaatatttttggatattatctttaaaacactacattgtatagtggtcaaatttaatttggtaaaattgcgtcacttttcctataacaaatagtgtccacgaactttatgtacacacct
gi|3 : aaataatttgacaacattcgtacattttcgccaacTA--CACAGTA---G-TATGTTCGGGGCAGGTG--------------ACGCTCGGC-ATTGCTTTGACACTCCTTAAG---TGTCTTTCCGTG-TTATGA-----TTACACCGT------------ATT--GA--TACTGACATGTGGGC---TATGTGGAAGTTCAAA----------AA-G--AATG-TCTATTTTTTT-GTAAGCATTTCT----------GGTTACGATTGATTC----------AT----GTTGTGAAAAC--TGATTCATACACAATTGAGTATCAAACTTTTCT---------TGTTGTACTGGTGTTGCATTAATTAATAAATTGATATT-G----GT---TGACTCCT----TTAAGTTGTCTTGGTCATCTTCTG--GAGAGGTTTTTTCCTTCAGAGATTTGTCTGTGCTTTTTGTAAACCAAAGAACGATATGCTTTCGATTTTC-CAGTTT-CAGACTAGATAA-TTTAATAGTCTCCAGAGGTGATTTTCAAATCAGTATGCAGGATTCAACAA-TTGTCCTCTCTAAGTCTGTAACATCAGAATCAAACAT--GT----GT------------CT----------G-----------GTAAAAACA
gi|4 : gGAGGTGT----CA-AAAGTGTGTGTA-------------T---AAAGCATAAACTGAACATTATAA-ATTCATA------------------------TAAAAT--ATACAGCCATATATATAAAT-TTCAT-ACTATTA-A-G----A------TTG-T--A-AA----------------ATAT--T-ACA-----TTTATACAC--CAAATAA-----A--A----------CA-----AG--CAGGCACTAA-TGTTA-CTACGCA--CAAAGTAATGCGTATGTGTATGGTAAGTGCCGACGTCATAGTGACGTTCGGC-ACCGCTCTGACGCTCCTTAAA---TG--TTTCAGTT-TTGAAA-----TTACACCGT------------GTG--G----------------GC---TA--TGA----TCAAAGATGTTTCC-AA-T-TGATA-TCCG-TTGGT--GTTACCATTTCTTAATCCTTTCGATT----------G----------AT----GTTGCTAAAAC--TCTTTCATACA--AT--AG-ATCAAACC-ATCTGGCA--ATTTGTTGCACGAGTGTTA------TGAATAAATCACTACCTG-CATGT--CTGATTCGTTTAATTAAATTGGCTCGGTCATGGTCCG--TTGAG-TTTT
gi|5 : T----------GATT----------C----------AT----GTTTC---AAC--TAATTCATACA--ATCAAACATC------------CA--A--TGTTGCTCATGTGTTT------TGAATAACTTGCTATG-G-T-TGTTGCTGTCACCT----AAATATTGTCTTGGTCATTTTTCG--TCGAT-TGTTTTTGATAAAAAAATTGTTTGTGCAATT-ATAAACGAAAGAACAATATACTTTCGATTTTC-CAG-TT-CAGACTTGATTATTATAACAGTTTCCGTAGGTGGTTTTCGAATCGAATCGCATAACTTAATAG-TTGTCCTCTCT---GCCGTGACGTCA-AATC--ACAC--ATAGTATT------------ATCTTAATGATCA-----------G---AAAC-GCATG-AAGTTAT-GG---AA-----------------ACAGTGA-ATTTTAAACAATAT---TTCCAT-TCACATTA-AAATTATCAGAGTAAAATTGTGAA-----ATTTTGACACGGTAA--CCTCTTTTG-TTTCTATGTTATGCCTGTATGCAcattcatg
gi|6 : atttctggttccactTTTTT---TGCGT--CATCATAATT--TCATGCAG----TT------------AT----------G-----------G---AAACTGGCTGTAAATTGT-AAAC-AAC----T--TGAAATTTGCCACTGAAATTGTCAA-GATATGACGTCGACGTCACG-TA-CA-TTTT--------ACCAGGAAA-----ATTTCAACGTATTTA--CT-CTATTGTGTGTTATTTACCACTGGTATATACCATATGTAT-TTATTCTATCTTTCAAGTGA
gi|6 : cgAAT-TTTATTACTATAA-A-GTACTATGTCTTATG-TCCATAA----------------ATAT--TTAAAGTTGTTTGAAAAATTACGAA--------A--A----------TA-----TG--C------CTA-TATA---TACATAATCGTAAAA---C-GATGTGCGGGGCAGGT-CGGACATCAC-TTGAtgtccgacctgccccgcacatcgttttacgattatgtatatataggcatattttcgtaatttttcaaacaactttaaatatttatggacataagacatagtactttatagtaataaaattgaatttgatcagactgcgttatttttctaataacgcctagtgtctacgtattcaacggacacaccttg
gi|7 : cgttttttgcgtcatcataatttcatgcagttatggaaactggctgtaaattgtaaacaacttgaaatttgccactgaaattgtcaagatatgacgtcgacgtcacgtacattttaccaggaaaatttcaacgtatttactctattgtgtgttatttaccactggtatataccatatgtatttattctatcttGGTGTGTTTCACAAAGTTAATGGACA--ACC--T---TTATAAAGGCAGAACTAAACAC-ATACCATTTATATAA---CGTACACAGATATGTAGATATAATGTATACAGACATGTAGATATAA-TGTAT-ACAGACA-N-N----N------NNN-N--N-NNTGCTGTTCCGTTCTGTATAT--T-AAA-----TGGATAAAC--CGTATAT----TA--ACTAG------TACG---TG--C------TTA-TGTAG-CTACATA--TACAGCA---C-TATATGCGGGACAGATGCCGAAGTCATGTTGACGTTCGGT-GTCGCTCTGACTCTCCA-AAGAATTGTCTTTCAATGATTG----------ATACTAA-----------CACA--TG--TG-----------G----TAGGTTTAAGTTCAAAG-T-TTTTC-AA-GGTAATA-ACCGTTTTTTTTGTCAGCATTTCT----------GGTT----------gaatttgatcagactgcgttatttttctaataacgcctagtgtctacgtattcaacggacacaccttg
gi|8 : GGTGTGTT-CAAAAAGTTTGTGACCA--ACC--T---T---AA---TAAAAC--AAC-----AAC-----TA-AA---C--------------------AA-----------ATGTGGATCAAT-TTTAT-ACATTTA-A------A------ATG-A--T-AA----------------ATAT--T-AAA-----TTGGTACAC--CTTATATAAACTATTA----------TG-----TG--C------TCA-TGTAA-TTACATA--CACAGTA---C-TATGTGTGGG-CAGATGCAAACATCATTTTGATGTTCAGCCGT-GCTCTGAAGTTCCATAAG---TGTCTGTCAGTG-TTGTGC-----ATACACCGTGTTGATACTAACATA--AT--TATGG--------GC---TAGGTGAAAGTTCAAAG-G-TTT--------TGATG-TATGTTTAGA--TTAAGCATTTAT----------GGTT----------CCATTTAATTTGT----GTTGCAAGAAG--TCATTTGCACA--ATTGAGCA
gi|9 : GAGGTGTGTC-CGTAAAATACGTAGACA--CCA--TGTAT---AAAACTTGAAACAAACGT-TTGTCATTCATA-AA-------------------------ATTTATATAGCCGTATAGTTGACG-TTAAT-ACCA--ACA-G----A------ATGGT--A-AA----------------ATAT--C-AAT-----ATGATACGC--CAAATAT----TA--A----------TAAAATATG--C------T-A-TTTAAACTACATG--CACAAAA---C-AATGTACGGGGCAGGTCTCGGCGTCACGCTTACTTACGAC-GTCAGCCCGACGTTGCGAAAG---TGTCTGTCGGTG-CTAGGGCTATTTTACAC-----------------T--GG--TA------------C---T-GATG-----TCGCAG-T-TTTTCAAA-G-TA
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|12 ): GATTTATAACCTACCCCGCTCATATCTACGTTATTATATAATTAAAAATATATTATCATAATGATTTCGAATGATTTTTCAAATAATTACAGATATTTTTTTTTAAAAAAATACATTTTATAGTGGTCAAATTAAATTTGACAAAATTGCGTCAATTTTCCTACAACAAACAGTTCCACGAACTTTATGGACACCCCTCATAC
Unaligned ( gi|14 ): ACTATCATCATATTGATTCGAATGATTTTGTAAATAGTTCGAGATATTAGTTATAAGACATAATATTTATAGTGGTTAAATTAAATTGGACAGAATTGCATCAATTTTTGCCAATTTTCCTTCACCAATTAGTGTAACGTGACAAAATGTATGGACACACCTCGAAT
Alignments
lowQualScore : 111111111111111111111111111111111111111
lowQualScore : 1111111 1111 77777777777777777777777777 333333333333333333333333333333333333333333 11111 5555555555555555555555555555555555555555 11 111 111 222222222 000000000000000000000000000000000000000 1111111111 11111 2222222222 555555555555555555555 1111 1111111 333333333 2222222 222222222222 1111 11 1 1 1 1 111 11 88888888888888888888888888888888888888888888888888 8888888888888888888888 11111 2222 222222222222 11111 1 11
lowQualScore : 4 5 5 66 66 8888888 0 66 2 2222 0 1 1 22222222222222222222222222 4 0 3 3 55 111111111111111111111111111111111111111111 5555 00000 66 0 5555555555555555555555555555555555555555 2 4 00 55 444 4 2 3 99 66 3 55 000 0 5 000000000 3 111111111111111111111111111111111111111 0 22 0 777 0 8888888888 5 6 66666 5 0 1111111111 666666666666666666666 2222 8 77 1 77 6 1 3333333 111111111 3 4444444 555555555555 1 7777 1 0 3 11 1 888 0 0 0 3 3 0 0 0 0 4 3 0 00 6 33 0 0 444 44 8 11 55555555555555555555555555555555555555555555555555 3 3 1 9999999999999999999999 1 8 6 11111 5 2222 555555555555 66666 11 333 99 7 0 7777 2 3 0 8 88
lowQualScore : . . . .. .. ....... . .. . .... . . . .......................... . . . . .. .......................................... .... ..... .. . ........................................ . . .. .. ... . . . .. .. . .. ... . . ......... . ....................................... . .. . ... . .......... . . ..... . . .......... ..................... .... . .. . .. . . ....... ......... . ....... ............ . .... . . . .. . ... . . . . . . . . . . . . .. . .. . . ... .. . .. .................................................. . . . ...................... . . . ..... . .... ............ ..... .. ... .. . . .... . . . . ..
lowQualScore : 4 3 4 11 11 8888888 4 66 0 3333 9 9 8 44444444444444444444444444 4 1 6 6 99 444444444444444444444444444444444444444444 6666 00000 11 9 7777777777777777777777777777777777777777 7 4 77 55 000 0 5 2 55 11 0 77 000 3 7 000000000 0 666666666666666666666666666666666666666 4 44 2 000 1 6666666666 7 3 33333 1 7 9999999999 999999999999999999999 1111 9 99 0 99 3 0 2222222 888888888 7 4444444 000000000000 4 0000 4 6 8 00 0 888 2 2 8 2 2 2 0 0 0 2 2 2 55 5 88 8 0 000 22 2 00 22222222222222222222222222222222222222222222222222 5 2 0 4444444444444444444444 0 8 7 33333 7 1111 555555555555 77777 77 555 22 5 7 2222 2 7 0 0 00
consensus : GAGGTGTGTC-CANAAAGTTCGTGGACA--ACC--T---T---AAAACNAGAACTAAACGT-ATAACATTTATA-AA---C-----------------TATAATTTATACAGCCATGTAGATAAAT-TTTAT-ACNATTA-A-G----A------ATG-T--A-AA----------------ATAT--T-AAA-----TTGATACAC--CGAATAT----TA--A----------TA-----TG--C------TTA-TGTAA-CTACATA--CACAGTA---C-TATGTGCGGGGCAGGTGCCGACGTCACGTTGACGTTCGGC-GTCGCTCTGACGCTCCTTAAG---TGTCTTTCAGTG-TTGGGN-----TTACACCGT-----------CATN--GG--TA-----------GC---TAGGTGAAAGTTCAAAG-T-TTTTC-AA-G-TAATG-TCCGTTTNTT--GTAAGCATTTCT----------GGTT----------C----------AT----GTTGCGAAAAC--TNATTCATACA--ATCGAGCATCNAACCTTTCTGACA--A--TGTTGCACGTGTGTTG------TGAATAAATCGCTATC-G-CATGT--CTGACTCCT----TTAAGTTGTCTTGGTCATCTTCCG--TNGAG-TTTTTTCCATCAGAAATTCGTCTGTGCTATTTGTAAACCAAAGAACGATACACTTTCGGTTTTC-CAG-TT-CAGACTCGATAATTTTAACAGTTTCCGCAGGTGGTTTTCGAATCGAAACGCATAATTTAATAA-TTGTCCTCTCT---TCCGTGACGTCAGAATC--ACAT--AT----TT------------AT----------G-----------G---AAACAGCTTGCAAATTTT-AA-C-AACG--TT--CG----TTGACANTGANATTTTCAG-AATATGACTTCGACGTCACA-TA-CAATTTT--------AACCGTAAA-----ATTTCGACGCGTTTA--CTNCTTTCG-GTTCTATGTAACGCCCGTATACATTATAGGTATGCTATTC-ATCTTTCTAGTGAGCTGAGTGATTT
Reference ( family-213 ) : GAGGTGTGTC-CANAAAGTTCGTGGACA--ACC--T---T---AAAACNAGAACTAAACGT-ATAACATTTATA-AA---C-----------------TATAATTTATACAGCCATGTAGATAAAT-TTTAT-ACNATTA-A-G----A------ATG-T--A-AA----------------ATAT--T-AAA-----TTGATACAC--CGAATAT----TA--A----------TA-----TG--C------TTA-TGTAA-CTACATA--CACAGTA---C-TATGTGCGGGGCAGGTGCCGACGTCACGTTGACGTTCGGC-GTCGCTCTGACGCTCCTTAAG---TGTCTTTCAGTG-TTGGGN-----TTACACCGT-----------CATN--GG--TA-----------GC---TAGGTGAAAGTTCAAAG-T-TTTTC-AA-G-TAATG-TCCGTTTNTT--GTAAGCATTTCT----------GGTT----------C----------AT----GTTGCGAAAAC--TNATTCATACA--ATCGAGCATCNAACCTTTCTGACA--A--TGTTGCACGTGTGTTG------TGAATAAATCGCTATC-G-CATGT--CTGACTCCT----TTAAGTTGTCTTGGTCATCTTCCG--TNGAG-TTTTTTCCATCAGAAATTCGTCTGTGCTATTTGTAAACCAAAGAACGATACACTTTCGGTTTTC-CAG-TT-CAGACTCGATAATTTTAACAGTTTCCGCAGGTGGTTTTCGAATCGAAACGCATAATTTAATAA-TTGTCCTCTCT---TCCGTGACGTCAGAATC--ACAT--AT----TT------------AT----------G-----------G---AAACAGCTTGCAAATTTT-AA-C-AACG--TT--CG----TTGACANTGANATTTTCAG-AATATGACTTCGACGTCACA-TA-CAATTTT--------AACCGTAAA-----ATTTCGACGCGTTTA--CTNCTTTCG-GTTCTATGTAACGCCCGTATACATTATAGGTATGCTATTC-ATCTTTCTAGTGAGCTGAGTGATTT
gi|1 : GAGGTGTGTC-CAAAAA-TTTGTGAACA--ACT--T---T---AAAACAAGAACTAAAAAT-ATAACATTTATA-AA---C-----------------TATAATTTACACAGCCATGTATATAAAT-TTTAT-ACAATTA-A-G----A------ATA-T--T-AA----------------ATAT--T-AAA-----GTGGAACAC--CAAATTT----TA---------------------G--C------TTA-TGTAA-CCACATA--CACAGTA---C-TATGTATGGGATAGGTGCTCACATCATTTTGATATTCAGT-ATCACTCGAACGCTCCTTCAA---TGTTGTTCAGTG-CTGGGC-----TTTCACGGT-----------CATAAAGGCCTA-----------GCCGCTAGGTGAAAGTTCAAAG-T-TTCTC-AAAG-TACTG-TCTGTTTGTT--GTAAGAATTTCT----------GGTT----------C----------AT----GTTGCGAAAAT--TGATTTATGCA--ATTGAGCATCCAACCTTTCTGAC------TATTGCACCTGTGTTG------TGAATAAATTGCTATCAG-CATGT--TTGTCTCCT----TTAATTTGGTT--GTCTTCTTCTG--TGGAG-TTTTTTCTATCAGAAATCCGTCTG--CTATTTGTAAACCAAAGAACAATACACTTTCAGTTTTC-CAG-TTGCAGACTTGATAATTTTAACAGTTTCCGCAGGTAGTTTTCGAATATAAACACATAATTTGATAA-TGGCCCTCTCT---CCTGTGATGTCAAAATC--ACAT--GT----TT------------AT----------G-----------A---AAACAGCTTGCGAATGTT--A-C-A----------G----TTGACATTGACATTTTCAG-AATATGACC------TCACA-TG-T-ATTTT--------AACTGTAAA-----ATGTTGGCACATTTA--CACCTTTTG-AATCAATGTAATACATGTGTACATTACAGGTGTGCTAATC-ATCTCCCTAATAAGTTGAGTGATTT
gi|10 : -TA-CA-TTTT--------ACCGGGAAA-----ATTTCGACGTATTCAATCTGTTGTCT-GT--TATATACCGCTCATATATATCGTATGTAT--TTTTC-ATCTTTCTGGTGA
gi|10 : gT-ATAAC---TATA-AAGTAC-----------------TATGTCTTATA-AGTTATGTCCGTAAATATTTAA-ACAATTG----------------TT-T--G-AA----------------AAAT--T-A------------------CGAG--------A--A----------TA-----TG--C------CTA-TATA---CGCATA--CTC-GTAAAAC-GATGTGCGGGGCAAGT-CGGACATCACtgtccgacttgccccgcacatcgttttacgagtatgcgtatataggcatattctcgtaatttttcaaacaattgtttaaatatttacggacataacttataagacatagtactttatagttataaagttgaatttgaacagattgcgttattttgctaataacgccgtgtgtctacgtattttactgacacac
gi|11 : gtacattttaccgggaaaatttcgacgtattcaatctgttgtctgttatataccgctcatatatatcgtatgtatttttcatctttctgAT-TTTAC-ACCATTA-A------A------ATG-T--A-AA----------------ATATGAT-AGA-----TTGAT-CAC--CGAAGAT----TA--ACAAGATCTATTA-----TG--TG-----TTAATGTAA-CTACATA--CACAGTA---C-TATGAACATAGCAGGTGCTAACGTCGCGGTGACGTT-------------GACACTCCTCACG---TTTCTTTCTATG-TTAGGG-----CTACACCGT------------ATT--GA--TACGAACACAATGGC---TTGTTGAAAAT-CTAAG-T-TTTTCTAA-G-TCATG-TC-GTTTTTC--GT--------TT----------GATT----------C----------AT----TTTACAAAAAC--TGATTCATACA--ATCAAaagttgaatttgaacagattgcgttattttgctaataacgccgtgtgtctacgtattttactgacacac
gi|13 : GAGGAGTGTT-TTAAAAGTTCGTGGACA--AACATTA--T---AAAAAGAGGACTAA---------CATTTATA--------------------------TAATGTATACACTCATGTAGATAAAT-TTTA--AC---------------------TG-T--A-AA----------------ATAT--A-AAA-----TTGATACAC--GTAATAT----TA--ACTTT------TA-----TGTTC------TCA-CGTAC-CTACATA--CACAGTA---C-TTTGTGCGGGGCAGATGCCGACGT
gi|15 : -----------GC---TAGGTGAAAATTCAAAG-T-T------------ATGTTCTGTTTG-T--GTAAGGATTTCT----------GATT----------CCGTTTG----ATTCAAGTTG---AAACAATTATTCATACC--ATTGGGCATCTGA-CTTTCTGACAACA--TGTTGTACATG
gi|16 : ggGGTGTGTC-CAAAAAGTT-GTGGACA--ACC--T---TTATAAAACAAGAACTAAACAT-ATAGCATTTATA--------------------------TAATTCATACAGCCATTTGGAAAAAT-TATAT-ACC-TTA-ACA----A------ATT-T--A-AA----------------ATAT--C-AAA-----TTGATccagttactatcatcatat
gi|17 : T--AT----TT------------AT----------G-----------T---A--CAGCTTGCAGATTTT-AA-CCAATGCATTG-CG----TTGACCATGATAGTTTCAG-AATATGACTT---CGTCACA-TG-CAATT
gi|18 : caaaatcacacattttagtcatcagaaatgcatgcagtGAAGTGTGTC-CATAATGTTTATATGCA--ACC--T---T---TATA-AAGAA--AAA-GT-ATAACAT----A-AA---CAATGTA-----------TATACTTTATACAGCCATGTAGATAATT-TTTAT-ACCATTA-A-A----A------ACG-T--A-CA----------------ATAT--
gi|19 : CAG-AATATGTCTTCAATGTCATA-TTTC--TTTT--------AACTTTAAC-----ACATTGATATGTTTA--TTGCTTTCG-ACTCTATGTAAAGCCCGTCTACGTTATGGGTATGCTATTC-GTCgcgg
gi|2 : TGCACGTGTGTTA------TGAAGAGGTCGTTATT-GACATTG--CTGACTCTT----TTAAGTTGTCTTTGCCATCCTCCACATTG----TTTTTCCATTAGACATTCGCCTGTGCTATTTGTAAACTAAAGAACGATACACTTCCAGTTTTCACAT-TG-CAGATTCGGTACTTTTTACAGTTTTCGCTGGCGATTTTAGAATTGAAAC-------TTAATAATTTATCCCCCTT---TCCACGTCGTCAGAATA--ACAT--AT----TTTAGTTATCAGCAAT----------ACATACAGTTATG---AAACAACTTGCAAATTTTGAA-C-AATG--TTTCCA----TTGACGTTTAAATTTTAAG-AAGTTGACCTCAACGTCACA-TA--AATTTT--------A--CATATATTTTTATTTT-ACAAATTTA--CTCTATTTG-GTTCTATGTAATGCCGGAATACATTAGTGGTATGCGATTC-ATCTTTCTAATGAGCT--GTGATTT
gi|20 : GGTGTATC-TATAAAGTTCGTGGACACTACT--T---T---gctcagcagaaagctttgttagtatgtaactataggcgtattgtcatagtttgtaaatatttttggatattatctttaaaacactacattgtatagtggtcaaatttaatttggtaaaattgcgtcacttttcctataacaaatagtgtccacgaactttatgtacacacct
gi|3 : aaataatttgacaacattcgtacattttcgccaacTA--CACAGTA---G-TATGTTCGGGGCAGGTG--------------ACGCTCGGC-ATTGCTTTGACACTCCTTAAG---TGTCTTTCCGTG-TTATGA-----TTACACCGT------------ATT--GA--TACTGACATGTGGGC---TATGTGGAAGTTCAAA----------AA-G--AATG-TCTATTTTTTT-GTAAGCATTTCT----------GGTTACGATTGATTC----------AT----GTTGTGAAAAC--TGATTCATACACAATTGAGTATCAAACTTTTCT---------TGTTGTACTGGTGTTGCATTAATTAATAAATTGATATT-G----GT---TGACTCCT----TTAAGTTGTCTTGGTCATCTTCTG--GAGAGGTTTTTTCCTTCAGAGATTTGTCTGTGCTTTTTGTAAACCAAAGAACGATATGCTTTCGATTTTC-CAGTTT-CAGACTAGATAA-TTTAATAGTCTCCAGAGGTGATTTTCAAATCAGTATGCAGGATTCAACAA-TTGTCCTCTCTAAGTCTGTAACATCAGAATCAAACAT--GT----GT------------CT----------G-----------GTAAAAACA
gi|4 : gGAGGTGT----CA-AAAGTGTGTGTA-------------T---AAAGCATAAACTGAACATTATAA-ATTCATA------------------------TAAAAT--ATACAGCCATATATATAAAT-TTCAT-ACTATTA-A-G----A------TTG-T--A-AA----------------ATAT--T-ACA-----TTTATACAC--CAAATAA-----A--A----------CA-----AG--CAGGCACTAA-TGTTA-CTACGCA--CAAAGTAATGCGTATGTGTATGGTAAGTGCCGACGTCATAGTGACGTTCGGC-ACCGCTCTGACGCTCCTTAAA---TG--TTTCAGTT-TTGAAA-----TTACACCGT------------GTG--G----------------GC---TA--TGA----TCAAAGATGTTTCC-AA-T-TGATA-TCCG-TTGGT--GTTACCATTTCTTAATCCTTTCGATT----------G----------AT----GTTGCTAAAAC--TCTTTCATACA--AT--AG-ATCAAACC-ATCTGGCA--ATTTGTTGCACGAGTGTTA------TGAATAAATCACTACCTG-CATGT--CTGATTCGTTTAATTAAATTGGCTCGGTCATGGTCCG--TTGAG-TTTT
gi|5 : T----------GATT----------C----------AT----GTTTC---AAC--TAATTCATACA--ATCAAACATC------------CA--A--TGTTGCTCATGTGTTT------TGAATAACTTGCTATG-G-T-TGTTGCTGTCACCT----AAATATTGTCTTGGTCATTTTTCG--TCGAT-TGTTTTTGATAAAAAAATTGTTTGTGCAATT-ATAAACGAAAGAACAATATACTTTCGATTTTC-CAG-TT-CAGACTTGATTATTATAACAGTTTCCGTAGGTGGTTTTCGAATCGAATCGCATAACTTAATAG-TTGTCCTCTCT---GCCGTGACGTCA-AATC--ACAC--ATAGTATT------------ATCTTAATGATCA-----------G---AAAC-GCATG-AAGTTAT-GG---AA-----------------ACAGTGA-ATTTTAAACAATAT---TTCCAT-TCACATTA-AAATTATCAGAGTAAAATTGTGAA-----ATTTTGACACGGTAA--CCTCTTTTG-TTTCTATGTTATGCCTGTATGCAcattcatg
gi|6 : atttctggttccactTTTTT---TGCGT--CATCATAATT--TCATGCAG----TT------------AT----------G-----------G---AAACTGGCTGTAAATTGT-AAAC-AAC----T--TGAAATTTGCCACTGAAATTGTCAA-GATATGACGTCGACGTCACG-TA-CA-TTTT--------ACCAGGAAA-----ATTTCAACGTATTTA--CT-CTATTGTGTGTTATTTACCACTGGTATATACCATATGTAT-TTATTCTATCTTTCAAGTGA
gi|6 : cgAAT-TTTATTACTATAA-A-GTACTATGTCTTATG-TCCATAA----------------ATAT--TTAAAGTTGTTTGAAAAATTACGAA--------A--A----------TA-----TG--C------CTA-TATA---TACATAATCGTAAAA---C-GATGTGCGGGGCAGGT-CGGACATCAC-TTGAtgtccgacctgccccgcacatcgttttacgattatgtatatataggcatattttcgtaatttttcaaacaactttaaatatttatggacataagacatagtactttatagtaataaaattgaatttgatcagactgcgttatttttctaataacgcctagtgtctacgtattcaacggacacaccttg
gi|7 : cgttttttgcgtcatcataatttcatgcagttatggaaactggctgtaaattgtaaacaacttgaaatttgccactgaaattgtcaagatatgacgtcgacgtcacgtacattttaccaggaaaatttcaacgtatttactctattgtgtgttatttaccactggtatataccatatgtatttattctatcttGGTGTGTTTCACAAAGTTAATGGACA--ACC--T---TTATAAAGGCAGAACTAAACAC-ATACCATTTATATAA---CGTACACAGATATGTAGATATAATGTATACAGACATGTAGATATAA-TGTAT-ACAGACA-N-N----N------NNN-N--N-NNTGCTGTTCCGTTCTGTATAT--T-AAA-----TGGATAAAC--CGTATAT----TA--ACTAG------TACG---TG--C------TTA-TGTAG-CTACATA--TACAGCA---C-TATATGCGGGACAGATGCCGAAGTCATGTTGACGTTCGGT-GTCGCTCTGACTCTCCA-AAGAATTGTCTTTCAATGATTG----------ATACTAA-----------CACA--TG--TG-----------G----TAGGTTTAAGTTCAAAG-T-TTTTC-AA-GGTAATA-ACCGTTTTTTTTGTCAGCATTTCT----------GGTT----------gaatttgatcagactgcgttatttttctaataacgcctagtgtctacgtattcaacggacacaccttg
gi|8 : GGTGTGTT-CAAAAAGTTTGTGACCA--ACC--T---T---AA---TAAAAC--AAC-----AAC-----TA-AA---C--------------------AA-----------ATGTGGATCAAT-TTTAT-ACATTTA-A------A------ATG-A--T-AA----------------ATAT--T-AAA-----TTGGTACAC--CTTATATAAACTATTA----------TG-----TG--C------TCA-TGTAA-TTACATA--CACAGTA---C-TATGTGTGGG-CAGATGCAAACATCATTTTGATGTTCAGCCGT-GCTCTGAAGTTCCATAAG---TGTCTGTCAGTG-TTGTGC-----ATACACCGTGTTGATACTAACATA--AT--TATGG--------GC---TAGGTGAAAGTTCAAAG-G-TTT--------TGATG-TATGTTTAGA--TTAAGCATTTAT----------GGTT----------CCATTTAATTTGT----GTTGCAAGAAG--TCATTTGCACA--ATTGAGCA
gi|9 : GAGGTGTGTC-CGTAAAATACGTAGACA--CCA--TGTAT---AAAACTTGAAACAAACGT-TTGTCATTCATA-AA-------------------------ATTTATATAGCCGTATAGTTGACG-TTAAT-ACCA--ACA-G----A------ATGGT--A-AA----------------ATAT--C-AAT-----ATGATACGC--CAAATAT----TA--A----------TAAAATATG--C------T-A-TTTAAACTACATG--CACAAAA---C-AATGTACGGGGCAGGTCTCGGCGTCACGCTTACTTACGAC-GTCAGCCCGACGTTGCGAAAG---TGTCTGTCGGTG-CTAGGGCTATTTTACAC-----------------T--GG--TA------------C---T-GATG-----TCGCAG-T-TTTTCAAA-G-TA
blockSeqs : T A C CT AT TTAT AG T CATT A T TAACGTACACAGATATGTAGATA T A T AA NNNNNNNNNNTGCTGTTCCGTTCTGT GAT GTTGT TA GATTAACAAGATCTATTATGTG T A AA AT AAA G G G GG CG T TC AAT A GGGCTATTT C GTTGATACTAACATAATTATGGGC AA ATG TCTAAGTC T T TTTTT A TAATCCTTTC ACGATTGATTC TCAA A AA G CA C C AAACTTT GACAACA A GCATTAA TGACATTGC A TTAA G T CA T AGG T T A T . C T G GG T AAG GT G AA ATTTTAGTTATCAGCAATACATACAGTTATG A C T AACCAATGCATTGCG A T C CAATG T CAA CAGAGTAAAATT TTTTT CG GTA AT G TGTG C C G T .
blockSeqs : . A T . . TTAT CA T CAT A T AACAATGTATA G . . CA AGTACTATGTCTTATGTCCATAA TT . . TATTAACTTTTATGTTC T . A . ATG . G T AG A C TT . . GGGC C ATTGATACGAACACAATGGC AA T TCAAGGTA . T TTTT A . CCATTTAATTT . G . T . T T TGACTT GGCAATT G A CTGCATGTC A . G T . A AG T T . . . A T G TA . . AA G . ATAGTATTATCTTAATGATCAG A C T GAACAATGTTTCCA T A . CAACG . AAA ACCG . TG ATG . G ACT A C G .
blockSeqs : . T C . . GTAT CA T CAC A T AAGTACTA T . . CA CAGAATGGTAAA T . . TATTAACTAGTACGTGC C . C . . . G C GT A C TT . . TGAT C ATTGATACTGACATGTGGGC GA T TCAAAGTA . C TTC T . CCGTTTG . T . G . T C AAACCA CAA T A GGTTGTTGC A . A C . T AT T . . . . T . . . . . GA T . GTGTCTGGTAA A T A AAACAACTTGAAAT G A . CGACG . CA AACT . TG AAA . C GTT T G . .
blockSeqs : . T T . . AT GC T CGT A T AAC T . . TA ACAAATTTAAA A . . TATAAACTATTATGTGC A . A . . . G C TT G C AT . . AAAT T CACATGTGG TA T CCAATTG . C GGT C . C . A . C . C C . . G T TGGT T . A T . C . . . . . GCAGTTATGG T . G GGAA C . . CCAT . TC ACCA . CA ACG . T TTT T T . .
blockSeqs : . C A . . T CT C GT A T TA G . . TA AAAACGTACA C . . TAAAACAAGCAGGCAC T . G . . . G G GC G . GA . . TGCA C GTGGGC AA G AAGA . T AGA A . G . . . A . T . A ATTTATGT . . CG . AA AC . T GTA . . GT C G
blockSeqs : . A T . . T A . C A . AA T . . AG AGATTGTAAA T . . TATTAATAAAATATGC T . A . . . G C T . . A . . . . TGGTAC A T TG . . GT . . C . . . C . . . CA
blockSeqs : . T C . . T T . . . . . . . . AT AAATGTAAA T . . AATATGC C . . . . . C A . . . . .
blockSeqs : . . . . . T . . . . . . CA AAATGATAA T . . AATATGC . . . . . . . C
blockSeqs : . . C TTTGAA C . . . . . .
blockSeqs : . . . TGTAAA
blockSeqCons : AA************************ TATNAACTANTATGTGC*********************** TTGATACAACACGTGGGC********************* GACC*** CA******* ATAGTTATGG**************************************** AAACAACTTGA*********** CGACG
originalCons : GAGGTGTGTC-CANAAAGTTCGTGGACA--ACC--T---T---AAAACNAGAACTAAACGT-ATAACATTTATA-AA---C-----------------TATAATTTATACAGCCATGTAGATAAAT-TTTAT-ACNATTA-A-G----A------ATG-T--A-AA----------------ATAT--T-AAA-----TTGATACAC--CGAATAT----TA--A----------TA-----TG--C------TTA-TGTAA-CTACATA--CACAGTA---C-TATGTGCGGGGCAGGTGCCGACGTCACGTTGACGTTCGGC-GTCGCTCTGACGCTCCTTAAG---TGTCTTTCAGTG-TTGGGN-----TTACACCGT-----------CATN--GG--TA-----------GC---TAGGTGAAAGTTCAAAG-T-TTTTC-AA-G-TAATG-TCCGTTTNTT--GTAAGCATTTCT----------GGTT----------C----------AT----GTTGCGAAAAC--TNATTCATACA--ATCGAGCATCNAACCTTTCTGACA--A--TGTTGCACGTGTGTTG------TGAATAAATCGCTATC-G-CATGT--CTGACTCCT----TTAAGTTGTCTTGGTCATCTTCCG--TNGAG-TTTTTTCCATCAGAAATTCGTCTGTGCTATTTGTAAACCAAAGAACGATACACTTTCGGTTTTC-CAG-TT-CAGACTCGATAATTTTAACAGTTTCCGCAGGTGGTTTTCGAATCGAAACGCATAATTTAATAA-TTGTCCTCTCT---TCCGTGACGTCAGAATC--ACAT--AT----TT------------AT----------G-----------G---AAACAGCTTGCAAATTTT-AA-C-AACG--TT--CG----TTGACANTGANATTTTCAG-AATATGACTTCGACGTCACA-TA-CAATTTT--------AACCGTAAA-----ATTTCGACGCGTTTA--CTNCTTTCG-GTTCTATGTAACGCCCGTATACATTATAGGTATGCTATTC-ATCTTTCTAGTGAGCTGAGTGATTT
finalCons : GAGGTGTGTC-CANAAAGTTCGTGGACA--ACC--T---T---AAAACNAGAACTAAACGT-ATAACATTTATAAA------------------------TAATTTATACAGCCATGTAGATAAAT-TTTAT-ACNATTA-A-G----A------ATG-T--A-AA----------------ATAT--T-AAA-----TTGATACAC--CGAATATNAACTANTATGTGC-----------------------TTA-TGTAA-CTACATA--CACAGTA---C-TATGTGCGGGGCAGGTGCCGACGTCACGTTGACGTTCGGC-GTCGCTCTGACGCTCCTTAAG---TGTCTTTCAGTG-TTGGGN-----TTACACCGTTTGATACAACACGTGGGC---------------------TAGGTGAAAGTTCAAAG-T-TTTTC-AA-G-TAATG-TCCGTTTNTT--GTAAGCATTTCT----------GGTT----------C----------AT----GTTGCGAAAAC--TNATTCATACA--ATCGAGCATCGACC---TCTCA-------TGTTGCACGTGTGTTG------TGAATAAATCGCTATC-G-CATGT--CTGACTCCT----TTAAGTTGTCTTGGTCATCTTCCG--TNGAG-TTTTTTCCATCAGAAATTCGTCTGTGCTATTTGTAAACCAAAGAACGATACACTTTCGGTTTTC-CAG-TT-CAGACTCGATAATTTTAACAGTTTCCGCAGGTGGTTTTCGAATCGAAACGCATAATTTAATAA-TTGTCCTCTCT---TCCGTGACGTCAGAATC--ACATATAGTTATGG----------------------------------------AAACAGCTTGCAAATTTTAAACAACTTGA-----------TTGACANTGANATTTTCAG-AATATGACTTCGACGTCACA-TA-CAATTTT--------AACCGTAAA-----ATTTCGACGCGTTTA--CTNCTTTCG-GTTCTATGTAACGCCCGTATACATTATAGGTATGCTATTC-ATCTTTCTAGTGAGCTGAGTGATTT
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|12 ): GATTTATAACCTACCCCGCTCATATCTACGTTATTATATAATTAAAAATATATTATCATAATGATTTCGAATGATTTTTCAAATAATTACAGATATTTTTTTTTAAAAAAATACATTTTATAGTGGTCAAATTAAATTTGACAAAATTGCGTCAATTTTCCTACAACAAACAGTTCCACGAACTTTATGGACACCCCTCATAC
Unaligned ( gi|14 ): ACTATCATCATATTGATTCGAATGATTTTGTAAATAGTTCGAGATATTAGTTATAAGACATAATATTTATAGTGGTTAAATTAAATTGGACAGAATTGCATCAATTTTTGCCAATTTTCCTTCACCAATTAGTGTAACGTGACAAAATGTATGGACACACCTCGAAT
Alignments
lowQualScore : 222 11111 666666666666666666666666 2222222222222222222222222222222222222222 1111111111 111 111 4444444444444444444 11 111 2222222222 555555555555555555555 1111 88888888888888888888888888 2222222 222222222222 1111 11 1 1 1 1 111 11111111 8888888888888888888888888888888 7777777777777777 11111 2222 222222222222 11111 1 11
lowQualScore : 4 4 3 55 66 000 777 0 66 2 44444 2 1 66 333333333333333333333333 6 4 888 4 9999999999999999999999999999999999999999 88888 3 2 11 7777777777 1 5 2 66 777 4 1 000 1 5 0 3 55 000 0 2 33 55 1 0 9999999999999999999 11 0 22 33 777 0 999 5555 5 0 77 8888 1 0 1111111111 666666666666666666666 2222 8 77 1 77 2 11111111111111111111111111 3 4444444 555555555555 1 7777 1 0 3 11 1 888 0 0 0 3 3 0 0 0 0 4 3 0 00 6 33 0 0 444 44 5 88888888 6 7777777777777777777777777777777 99 3 3 1 6 3333333333333333 1 8 6 11111 5 2222 555555555555 66666 11 333 99 7 0 7777 2 3 0 8 88
lowQualScore : . . . .. .. ... ... . .. . ..... . . .. ........................ . . ... . ........................................ ..... . . .. .......... . . . .. ... . . ... . . . . .. ... . . .. .. . . ................... .. . .. .. ... . ... .... . . .. .... . . .......... ..................... .... . .. . .. . .......................... . ....... ............ . .... . . . .. . ... . . . . . . . . . . . . .. . .. . . ... .. . ........ . ............................... .. . . . . ................ . . . ..... . .... ............ ..... .. ... .. . . .... . . . . ..
lowQualScore : 0 9 9 55 11 000 888 4 66 0 00000 1 0 99 555555555555555555555555 1 0 222 0 1111111111111111111111111111111111111111 88888 2 2 44 0000000000 2 0 0 11 888 4 9 666 7 7 4 0 77 000 3 3 44 44 4 7 7777777777777777777 99 4 44 44 000 1 444 2222 7 7 99 4444 6 7 9999999999 999999999999999999999 1111 9 99 0 99 7 00000000000000000000000000 7 4444444 000000000000 4 0000 4 6 8 00 0 888 2 2 8 2 2 2 0 0 0 2 2 2 55 5 88 8 0 000 22 2 33333333 7 8888888888888888888888888888888 22 5 2 0 8 0000000000000000 0 8 7 33333 7 1111 555555555555 77777 77 555 22 5 7 2222 2 7 0 0 00
consensus : GAGGTGTGTC-CANAAAGTTCGTGGACA--ACC--T---T---AAAACNAGAACTAAACGT-ATAACATTTA--TAA-------------------A---TAATTTATACAGCCATGTAGATAAATTTTAT-ACCATTA-A-G----A------AT-GT--A-AA----------------ATAT--T--AAATTGATACACCGAATATTAAC------TANTATGTGCTTATGT-AACTACATA--CACAGTA---C-TATGTGCGGGGCAGGTGCCGACGTCACGTTGACGTTCGG-CGTCGCTCTGACGCTCCTTAAG---TGTCTTTCAGTGTTGGGNTTACACCGT-TTGATACTAACA----CGTGG--GCTAGGTGAAAGTTCAAAG-T-TTTTC-AA-GTAATG-TCCG--TTTNTT-GTAAGCATTTCT----------GGTT----------C----------AT----GTTGCGAAAAC--TNATTCATACA--ATCGAGCAT-C-AA-C-C-TCTG----C--A---TGTTGCACGTGTGTTG------TGAATAAATCGCTATC-G-CATGT--CTGACTCCT----TTAAGTTGTCTTGGTCATCTTC--CGTNGAG-TTTTTTCCATCAGAAATTCGTCTGTGCTATTTGTAAACCAAAGAACGATACACTTTCGGTTTTC-CAG-TT-CAGACTCGATAATTTTAACAGTTTCCGCAGGTGGTTTTCGAATCGAAACGCATAATTTAATAA-TTGTCCTCTCT---TCCGTGACGTCAGAATCGCACG---TAG--T-TAT----------G----------------G---AA--ACAGCTTGCAAATTTTGAACAA---T---TCG-G---TTGACANTGANATTTTCAG-AATATGACTTCGACGTCACA-TA-CAATTTT--------AACCGTAAA-----ATTTCGACGCGTTTA--CTNCTTTCG-GTTCTATGTAACGCCCGTATACATTATAGGTATGCTATTC-ATCTTTCTAGTGAGCTGAGTGATTT
Reference ( family-213 ) : GAGGTGTGTC-CANAAAGTTCGTGGACA--ACC--T---T---AAAACNAGAACTAAACGT-ATAACATTTA--TAA-------------------A---TAATTTATACAGCCATGTAGATAAATTTTAT-ACNATTA-A-G----A------AT-GT--A-AA----------------ATAT--T--AAATTGATACACCGAATATNAAC------TANTATGTGCTTATGT-AACTACATA--CACAGTA---C-TATGTGCGGGGCAGGTGCCGACGTCACGTTGACGTTCGG-CGTCGCTCTGACGCTCCTTAAG---TGTCTTTCAGTGTTGGGNTTACACCGT-TTGATAC-AACA----CGTGG--GCTAGGTGAAAGTTCAAAG-T-TTTTC-AA-GTAATG-TCCG--TTTNTT-GTAAGCATTTCT----------GGTT----------C----------AT----GTTGCGAAAAC--TNATTCATACA--ATCGAGCAT-C-GA-C-C-TCT-----C--A---TGTTGCACGTGTGTTG------TGAATAAATCGCTATC-G-CATGT--CTGACTCCT----TTAAGTTGTCTTGGTCATCTTC--CGTNGAG-TTTTTTCCATCAGAAATTCGTCTGTGCTATTTGTAAACCAAAGAACGATACACTTTCGGTTTTC-CAG-TT-CAGACTCGATAATTTTAACAGTTTCCGCAGGTGGTTTTCGAATCGAAACGCATAATTTAATAA-TTGTCCTCTCT---TCCGTGACGTCAGAATCACATA---TAG--T-TAT----------G----------------G---AA--ACAGCTTGCAAATTTTAAACAA---C---TTG-A---TTGACANTGANATTTTCAG-AATATGACTTCGACGTCACA-TA-CAATTTT--------AACCGTAAA-----ATTTCGACGCGTTTA--CTNCTTTCG-GTTCTATGTAACGCCCGTATACATTATAGGTATGCTATTC-ATCTTTCTAGTGAGCTGAGTGATTT
gi|1 : GAGGTGTGTC-CAAAAA-TTTGTGAACA--ACT--T---T---AAAACAAGAACTAAAAAT-ATAACATTTA--TAA-------------------ACTATAATTTACACAGCCATGTATATAAATTTTAT-ACAATTA-A-G----A------AT-AT--T-AA----------------ATAT--T--AAAGTGGAACACCAAATTTTA----------------GCTTATGT-AACCACATA--CACAGTA---C-TATGTATGGGATAGGTGCTCACATCATTTTGATATTCAG-TATCACTCGAACGCTCCTTCAA---TGTTGTTCAGTGCTGGGCTTTCACGGT-C--ATA--AAGG----CCTAGCCGCTAGGTGAAAGTTCAAAG-T-TTCTCAAA-GTACTG-TCTG--TTTGTT-GTAAGAATTTCT----------GGTT----------C----------AT----GTTGCGAAAAT--TGATTTATGCA--ATTGAGCATCC-AA-C-C-TTT-----CTGAC--TATTGCACCTGTGTTG------TGAATAAATTGCTATCAG-CATGT--TTGTCTCCT----TTAATTTGGTT--GTCTTCTTC--TGTGGAG-TTTTTTCTATCAGAAATCCGTC--TGCTATTTGTAAACCAAAGAACAATACACTTTCAGTTTTC-CAG-TTGCAGACTTGATAATTTTAACAGTTTCCGCAGGTAGTTTTCGAATATAAACACATAATTTGATAA-TGGCCCTCTCT---CCTGTGATGTCAAAATCACATG---T----T-TAT----------G----------------A---AA--ACAGCTTGCGAATGTT--ACA------------G---TTGACATTGACATTTTCAG-AATATGACC------TCACA-TG-T-ATTTT--------AACTGTAAA-----ATGTTGGCACATTTA--CACCTTTTG-AATCAATGTAATACATGTGTACATTACAGGTGTGCTAATC-ATCTCCCTAATAAGTTGAGTGATTT
gi|10 : -TA-CA-TTTT--------ACCGGGAAA-----ATTTCGACGTATTCAATCTGTTGTCT-GT--TATATACCGCTCATATATATCGTATGTAT--TTTTC-ATCTTTCTGGTGA
gi|11 : gATTTTAC-ACCATTA-A------A------AT-GT--A-AA----------------ATATGAT--AGATTGAT-CACCGAAGATTAACAAGATCTATTATGTGTTAATGT-AACTACATA--CACAGTA---C-TATGAACATAGCAGGTGCTAACGTCGCGGTGACGT-------------TGACACTCCTCACG---TTTCTTTCTATGTTAGGGCTACACCGTATTGATACGAACA----CAATG--GCTTGTTGAAAA-TCTAAG-T-TTTTCTAA-GTCATG-T-CG--TTTTTC-G--------TTT----------GATT----------C----------AT----TTTACAAAAAC--TGATTCATACA--ATCAAtgtccgacttgccccgcacatcgttttacgagtatgcgtatataggcatattctcgtaatttttcaaacaattgtttaaatatttacggacataacttataagacatagtactttatagttataaagttgaatttgaacagattgcgttattttgctaataacgccgtgtgtctacgtattttactgacacac
gi|13 : GAGGAGTGTT-TTAAAAGTTCGTGGACA--AACATTA--T---AAAAAGAGGACTAA---------CATTTA--TA------------------------TAATGTATACACTCATGTAGATAAATTTTA--AC---------------------T-GT--A-AA----------------ATAT--A--AAATTGATACACGTAATATTAAC------TTTTATGTTCTCACGT-ACCTACATA--CACAGTA---C-TTTGTGCGGGGCAGATGCCGACGT
gi|15 : GG--GCTAGGTGAAAATTCAAAG-T-T-----------ATGTTCTG--TTTG-T-GTAAGGATTTCT----------GATT----------CCGTTTG----ATTCAAGTTG---AAACAATTATTCATACC--ATTGGGCAT-CTGA-CTT-TCTGACAAC--A---TGTTGTACATG
gi|16 : GGTGTGTC-CAAAAAGTT-GTGGACA--ACC--TTTAT---AAAACAAGAACTAAACAT-ATAGCATTTA--T---------------------A---TAATTCATACAGCCATTTGGAAAAATTATAT-ACC-TTA-ACA----A------AT-TT--A-AA----------------ATAT--C--AAATTGATccagttactatcatcatat
gi|17 : CATCAGAAATGCATG---CAG--T-TAT----------T----------------T---ATGTACAGCTTGCAGATTTTAACCAA---TGCATTGCG---TTGACCATGATAGTTTCAG-AATATGACTT---CGTCACA-TG-CAATT
gi|18 : caaaatcacacattttagtGAAGTGTGTC-CATAATGTTTATATGCA--ACC--T---T---TATA-AAGAA--AAA-GT-ATAACATAAA--CAATGTAT--------------A---TACTTTATACAGCCATGTAGATAATTTTTAT-ACCATTA-A-A----A------AC-GT--A-CA----------------ATAT--
gi|19 : CAG-AATATGTCTTCAATGTCATA-TTTC--TTTT--------AACTTTAAC-----ACATTGATATGTTTA--TTGCTTTCG-ACTCTATGTAAAGCCCGTCTACGTTATGGGTATGCTATTC-GTCgcgg
gi|2 : TGCACGTGTGTTA------TGAAGAGGTCGTTATT-GACATTG--CTGACTCTT----TTAAGTTGTCTTTGCCATCCTCCACATTG----TTTTTCCATTAGACATTCGCCTGTGCTATTTGTAAACTAAAGAACGATACACTTCCAGTTTTCACAT-TG-CAGATTCGGTACTTTTTACAGTTTTCGCTGGCGATTTTAGAATTGAAAC-------TTAATAATTTATCCCCCTT---TCCACGTCGTCAGAATAACATATTTTAG--T-TATCA--------GCAATACATACAGTTATG---AA--ACAACTTGCAAATTTTGAACAATGTT---TCC-A---TTGACGTTTAAATTTTAAG-AAGTTGACCTCAACGTCACA-TA--AATTTT--------A--CATATATTTTTATTTT-ACAAATTTA--CTCTATTTG-GTTCTATGTAATGCCGGAATACATTAGTGGTATGCGATTC-ATCTTTCTAATGAGCT--GTGATTT
gi|2 : AGGTGTGTA-CATAAAGTTCGTGGACA--gctcagcagaaagctttgttagtatgtaactataggcgtattgtcatagtttgtaaatatttttggatattatctttaaaacactacattgtatagtggtcaaatttaatttggtaaaattgcgtcacttttcctataacaaatagtgtccacgaactttatgtacacacct
gi|20 : tgcacgtgtgttatgaagaggtcgttattgacattgctgactcttttaagttgtctttgccatcctccacattgtttttccattagacattcgcctgtgctatttgtaaactaaagaacgatacacttccagttttcacattgcagattcggtactttttacagttttcgctggcgattttagaattgaaacttaataatttatccccctttccacgtcgtcagaataacatattttagttatcagcaatacatacagttatgaaacaacttgcaaattttgaacaatgtttccattgacgtttaaattttaagaagttgacctcaacgtcacataaattttacatatatttttattttacaaatttactctatttggttctatgtaatgccggaatacattagtggtatgcgattcatctttctaatgagctgtgatttgctcagcagaaagctttgttagtatgtaactataggcgtattgtcatagtttgtaaatatttttggatattatctttaaaacactacattgtatagtggtcaaatttaatttggtaaaattgcgtcacttttcctataacaaatagGGTGTATC-TATAAAGTTCGTGGACACTACT--T---T---
gi|3 : aaataatttgacaacattcgtacattttcgccaacTA--CACAGTA---G-TATGTTCGGGGCAGGTG--------------ACGCTCGG-CATTGCTTTGACACTCCTTAAG---TGTCTTTCCGTGTTATGATTACACCGTATTGATACTGACA----TGTGG--GCTATGTGGAAGTTCAAA----------AA-G-AATG-TCTA--TTTTTTTGTAAGCATTTCT----------GGTTACGATTGATTC----------AT----GTTGTGAAAAC--TGATTCATACACAATTGAGTAT-C-AAAC-T-TTT-----C--T---TGTTGTACTGGTGTTGCATTAATTAATAAATTGATATT-G----GT---TGACTCCT----TTAAGTTGTCTTGGTCATCTTC--TGGAGAGGTTTTTTCCTTCAGAGATTTGTCTGTGCTTTTTGTAAACCAAAGAACGATATGCTTTCGATTTTC-CAGTTT-CAGACTAGATAA-TTTAATAGTCTCCAGAGGTGATTTTCAAATCAGTATGCAGGATTCAACAA-TTGTCCTCTCTAAGTCTGTAACATCAGAATCAAACA---T-G--TGTCT----------G----------------GTAAAA--ACA
gi|4 : gGAGGTGT----CA-AAAGTGTGTGTA-------------T---AAAGCATAAACTGAACATTATAA-ATTCA--TAT-------------------A---AAAT--ATACAGCCATATATATAAATTTCAT-ACTATTA-A-G----A------TT-GT--A-AA----------------ATAT--T--ACATTTATACACCAAATA-AAAC------AAGCAGGCACTAATGT-TACTACGCA--CAAAGTAATGCGTATGTGTATGGTAAGTGCCGACGTCATAGTGACGTTCGG-CACCGCTCTGACGCTCCTTAAA---TG--TTTCAGTTTTGAAATTACACCGT------------------GTGG--GCTA--TGA----TCAAAGATGTTTCC-AA-TTGATA-TCCG---TTGGT-GTTACCATTTCTTAATCCTTTCGATT----------G----------AT----GTTGCTAAAAC--TCTTTCATACA--ATAGATCA----AA-C-CATCTGG---C--AATTTGTTGCACGAGTGTTA------TGAATAAATCACTACCTG-CATGT--CTGATTCGTTTAATTAAATTGGCTCGGTCATGGTC--CGTTGAG-TTTT
gi|5 : T----------GATT----------C----------AT----GTTTC---AAC--TAATTCATACA--ATCAAACAT-C-CA----------------A---TGTTGCTCATGTGTTT------TGAATAACTTGCTATG-G-T-TGTTGCTGTCACCT----AAATATTGTCTTGGTCATTTTT--CGTCGAT-TGTTTTTGATAAAAAAATTGTTTGTGCAATT-ATAAACGAAAGAACAATATACTTTCGATTTTC-CAG-TT-CAGACTTGATTATTATAACAGTTTCCGTAGGTGGTTTTCGAATCGAATCGCATAACTTAATAG-TTGTCCTCTCT---GCCGTGACGTCA-AATCACACA---TAGTAT-TATCTTAATGATCA----------------G---AA--AC-GCATG-AAGTTATGGA--------------------AACAGTGA-ATTTTAAACAATAT---TTCCAT-TCACATTA-AAATTATCAGAGTAAAATTGTGAA-----ATTTTGACACGGTAA--CCTCTTTTG-TTTCTATGTTATGCCTGTATGCAcattcatg
gi|6 : atttctggttccactTTTTT---TGCGT--CATCATAATTTCATG---CAG--T-TAT----------G----------------G---AA--ACTGGCTGTAAATTGTAAACAA---C---TTG-AAATTTGCCACTGAAATTGTCAA-GATATGACGTCGACGTCACG-TA-C-ATTTT--------ACCAGGAAA-----ATTTCAACGTATTTA--CT-CTATTGTGTGTTATTTACCACTGGTATATACCATATGTAT-TTATTCTATCTTTCAAGTGA
gi|6 : cgAATTTTATTACTATAA-A-GTACTATGTCTTAT-GTCCATAA----------------ATAT--TTAAAGTTGTT----TGAAAAATTAC------GAAAATATGCCTATAT-A--TACATAATCGTAAAA---C-GATGTGCGGGGCAGGT-CGGACATCAC-TTGAtgtccgacctgccccgcacatcgttttacgattatgtatatataggcatattttcgtaatttttcaaacaactttaaatatttatggacataagacatagtactttatagtaataaaattgaatttgatcagactgcgttatttttctaataacgcctagtgtctacgtattcaacggacacaccttg
gi|7 : cgttttttgcgtcatcataatttcatgcagttatggaaactggctgtaaattgtaaacaacttgaaatttgccactgaaattgtcaagatatgacgtcgacgtcacgtacattttaccaggaaaatttcaacgtatttactctattgtgtgttatttaccactggtatataccatatgtatttattctatcttGGTGTGTTTCACAAAGTTAATGGACA--ACC--T---TTATAAAGGCAGAACTAAACAC-ATACCATTTATATAACGTACACAGATATGTAGATA---TAATGTATACAGACATGTAGATATAATGTAT-ACAGACA-N-N----N------NN-NN--N-NNTGCTGTTCCGTTCTGTATAT--T--AAATGGATAAACCGTATATTAAC------TAGTACGTGCTTATGT-AGCTACATA--TACAGCA---C-TATATGCGGGACAGATGCCGAAGTCATGTTGACGTTCGG-TGTCGCTCTGACTCTCC-AAAGAATTGTCTTTCAATG--------A-------TTGATACTAACA----CATGT--GGTAGGTTTAAGTTCAAAG-T-TTTTC-AAGGTAATA-ACCGTTTTTTTT-GTCAGCATTTCT----------GGTT----------gaatttgatcagactgcgttatttttctaataacgcctagtgtctacgtattcaacggacacaccttg
gi|8 : GGTGTGTT-CAAAAAGTTTGTGACCA--ACC--T---T---AA---TAAAAC--AAC-----AAC-------TAA-------------------A---CAA-----------ATGTGGATCAATTTTAT-ACATTTA-A------A------AT-GA--T-AA----------------ATAT--T--AAATTGGTACACCTTATATAAAC------TATTATGTGCTCATGT-AATTACATA--CACAGTA---C-TATGTGT-GGGCAGATGCAAACATCATTTTGATGTTCAGCCGT-GCTCTGAAGTTCCATAAG---TGTCTGTCAGTGTTGTGCATACACCGTGTTGATACTAACATAATTATGG--GCTAGGTGAAAGTTCAAAG-G-TTT-------TGATG-TATG--TTTAGA-TTAAGCATTTAT----------GGTT----------CCATTTAATTTGT----GTTGCAAGAAG--TCATTTGCACA--ATTGAGCA
gi|9 : GAGGTGTGTC-CGTAAAATACGTAGACA--CCA--TGTAT---AAAACTTGAAACAAACGT-TTGTCATTCA--TAA------------------------AATTTATATAGCCGTATAGTTGACGTTAAT-ACCA--ACA-G----A------ATGGT--A-AA----------------ATAT--C--AATATGATACGCCAAATATTAA-------TAAAATATGC-TATTTAAACTACATG--CACAAAA---C-AATGTACGGGGCAGGTCTCGGCGTCACGCTTACTTACGA-CGTCAGCCCGACGTTGCGAAAG---TGTCTGTCGGTGCTAGGGCTAT----T-TT-------ACA----C-TGGT-ACT-GATG-----TCGCAG-T-TTTTCAAA-GTA
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|12 ): GATTTATAACCTACCCCGCTCATATCTACGTTATTATATAATTAAAAATATATTATCATAATGATTTCGAATGATTTTTCAAATAATTACAGATATTTTTTTTTAAAAAAATACATTTTATAGTGGTCAAATTAAATTTGACAAAATTGCGTCAATTTTCCTACAACAAACAGTTCCACGAACTTTATGGACACCCCTCATAC
Unaligned ( gi|14 ): ACTATCATCATATTGATTCGAATGATTTTGTAAATAGTTCGAGATATTAGTTATAAGACATAATATTTATAGTGGTTAAATTAAATTGGACAGAATTGCATCAATTTTTGCCAATTTTCCTTCACCAATTAGTGTAACGTGACAAAATGTATGGACACACCTCGAAT