lowQualScore : 1111111111111111111111111111111111 1111111111111111111111111111111111111 22222222222222222222222222222222222222222222222222222222222222222222222222222 22222222222222222222222222222222222222222
lowQualScore : 1111111111111111111111111111111111 1 22 777777777777777777777777777777777 3333 11 1 4444444444 1 11 1 9999999999999999999999999999999999999 11 3333333333 22222222 11 1 999999999999999999999999999999999999999999 22222222222222222222222222222222222222222222222222222222222222222222222222222 2222 11 111 3333 2222 11 3333333333333 1111 1 444444444 888888888888888888888888888888888888888888 111111 1111 1111 11111 555555555555555555555555555555555555 11 11111111111111111111111111111111111111111 55 11 4
lowQualScore : 3333333333333333333333333333333333 6 9 33 222222222222222222222222222222222 2222 33 11 3 9 6 0 3 99 7 1 6 0 0 8888888888 0 22 1 1111111111111111111111111111111111111 11 3333333333 4 22222222 3 0 88 7 2 444444444444444444444444444444444444444444 2 66666666666666666666666666666666666666666666666666666666666666666666666666666 8888 55 0 777 1 4444 7777 9 00 4 9999999999999 5555 0 6 111111111 555555555555555555555555555555555555555555 55 3 3 3 111111 77 1 3 0000 5555 66666 77777 3 2 00000 1 4 0 77777 2 666666666666666666666666666666666666 2 2 33 0 00000000000000000000000000000000000000000 55 22 6 0 6 6
lowQualScore : .................................. . . .. ................................. .... .. .. . . . . . .. . . . . . .......... . .. . ..................................... .. .......... . ........ . . .. . . .......................................... . ............................................................................. .... .. . ... . .... .... . .. . ............. .... . . ......... .......................................... .. . . . ...... .. . . .... .... ..... ..... . . ..... . . . ..... . .................................... . . .. . ......................................... .. .. . . . .
lowQualScore : 2222222222222222222222222222222222 7 2 44 000000000000000000000000000000000 5555 22 55 2 0 0 7 7 33 7 0 7 0 2 0000000000 0 00 5 0000000000000000000000000000000000000 00 5555555555 2 22222222 2 8 00 0 8 000000000000000000000000000000000000000000 0 77777777777777777777777777777777777777777777777777777777777777777777777777777 3333 77 7 000 0 3333 7777 7 33 7 7777777777777 0000 5 0 555555555 222222222222222222222222222222222222222222 55 1 2 6 111111 44 8 1 6666 7777 22222 11111 6 9 00000 7 4 1 11111 9 000000000000000000000000000000000000 7 7 33 8 00000000000000000000000000000000000000000 00 00 0 0 0 0
consensus : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTGCATAACAAGTTAG----AGAAACT-C-GT----TTT---AC------GTC-ATTTCAAACAATGCTGATAACGAAG-GGAA-------TT--GTGTA---------CGCANCTTATCTCNTC-CCGAGTTTGTTTTTACATATTCTGACACGCGATTGNCCGANTCAGTTGTTAGG-CCGTT--CN------C-CTATTCAGCTGCCAAACNTGTCAGCTGT-AA--ATCA--------ATATAA-CT--ANCGTNTGTTTATN--TA-ATATATCGATTGATTTGGCTCGCTGCTCNCAGAAATTTCCAACATAAAC---------T-----TGA----A---------A---------AGATCGTATCTCAGTGATNATTNTTGATTATT-AGATAATAATTAGCCTCATNNATGGGATNTCNNACCGAATAGCNGAANNCCGGTATGCTAGTAATGT----AATCAGCACCGCGGTCAATGAAACTTT-CAAAATGACTGNTTTGCAGCGNTAACNTCGAC-TT------CA-TGGTACCGGGTTTCCGTCGACTATCAACCATGCCGCAAAGTGGGGNNNAAC--TTA--ACCTAT--CGGGATTT--CTGAGA--CACTTGAAC-AGTCAAAACAAAAGGG---TCAAAGTAGT-G-C--AAAAAAGCCGCC---GATTT-----TNT-T-----TGATACCGATTGTTT-----AA-GAAACGTCG--TAAA----N--G---TTC-GAAAN----TCTAACTTGATA-TG-CAAGGCATAN-TACTTTATGACGTTTCGTGTTGATC-AAAC---------AAAT-GTATAATGTTTAATGTTTGTACAGACAA
Reference ( gi|1 ) : GTCCTCGTCCTATACGTTCTACCTATTCATATTGCATAACAAGTTAG----A-------C-GT----TTG---AC------GTC-ATTTGAAACAATGCTGATGATGAAT-GGAA-------TT--GTAAA---------CG-GTCTTATCTCTTCACTGAGTTTGTTTTTACATATTTTGACATGCGATTGGCCTATTCAATTGTTAGG-CCGTT--CA------C-CTATTCGACTGCCAAACTTGTCAACCGTCAA-AATCACAGTAATAATATAA-CTTGAGCGTGTGTTTATA--TATATATATCGATTTATTTAGTTCGCTGTTCCCAGAAATTTGTAACTTGAAC---------T-----TGA----A---------A---------AGATCGTATCTCAGCGATGACTG--AATAACTGAAATAATAAT-------ATAAA---AATATCAAAATGAAAAGTTGCATA--AATAT------AATGT----AATCGGCACCGCGGTCATTAAAATTTTCCGCAATGACTGGTGTGCAACGCGAACTTTTGCGTT------CA-TGATACCCGGTTTCTATTGGCTATCAACCATGTTAT-----GAGACTGAAC-GTTA--ACATAT--TTGGATTT--CTGAGA--CATTTGAAC-AGTCAAAACAAAATGG---TCAAAGTAAT-G-C--AAAAAAGTCGCC---GATTT-----TGT-T-----TGATACCGATTGTTT-----AA-GAAGTCTCG--TAAA----A--G---TTC-GAAAG----TCTAACTTGATA-TG-CAAGGCATAC-TACT---TG--GT---GTGT--ATCTAAACATTTTACCAAAATAATATAATG--TAACATTTAT-CAAATAA
gi|17 : TTGCATAACAAGTTAG----AGAA----C-CTCTACTTT---AC------ATC-ATTTCAAACAATGTTGGTGATGAAGAGGAAGTGAACCTT--GCGAA---------CATGACTAAACTC--CACTCAGTTTGCTTTTGCATA
gi|25 : tacgatTTGCATAACAAATTAGAGAAA-------C-TC----TTGTATAC------ATT-ATTCCATACAATGGTCTTAATGAAG-GGAA-------TT--G
gi|4 : atgccTGCATAACAAGTTAG----AGCAACT-CAGT----TTT---ACATGTATGTC-ATTTTAAACAATGCTGATGAAGAAG-GAGA-------TT--GTGTA---------TGCAACTTATCTCATCTCTGAGTTTGTTTTTACATATTGTTACACCTGATTGGCCGAATCAATT----GG-CCATT--CC------C-TTATTTAGCTGTCAAACATGTCAATTG--AATGATCATCG-----ACATAA-TT--ACTATG-GTTTATGTTTATATATATCAATTGATTTGACTCACTGCTCCCAGAAATTT-CAACATAAACTAGAAATGAT-----TGA----A---------A---------AGATTGTATCTCAATGATAATT
gi|24 : TGCATGGCAAGTCAG----AGAAACTCT-GT----TTT---AT------GTC-ATTTCAAACAAtt
gi|7 : gttgtttacattacgattactgcatctcc-GT----TTG------------TC-ATTTTGTACAACGCTGATAATGAAG-GGAA-------TTATGTACG---------TG-ATCT-ATCTCTCC-CCGAGCCTGTT---ACATATTCTGACACGTGATTAACAAAGTCAGTTGTTAGA-CCGTTCCCACGTTCCC-CTATTCAGCTGCCAAACc
gi|11 : taacatgatagatattaagtttt-GT----TTT---AC------GGCGATTT-AAATGATGCTAATACCAAAA-GGAA-------TT--GTGTATGTGACATGCG-AT-TTATCTCCT-----------TTTTTACATGTTCTGACACGCTGCTGTTTGATTCAGTTGTTAGATCTTTT--CC------C-CTATTCAGCTGTCAa
gi|15 : aaactctGG-ACGTT---A------CTCCATTCAGCTGCCAATCCTGTC-----T-----ATCA---------TATAAGCT---ACGTTTGTTTATA--TTGATA----GATTT---T-GCTCGCTGCTCTCAGAAATTTCCAACATAAAC---------T-----TGA----
gi|14 : ttTCAGCTGTCAA---TC----TAATAAT-TA--CTACAGTGTATGTTTATT--TA---A-ATCCTTTGATTTGACTCGCTGTTCCCAGAAATTTCCAGCATAAAC---------T-----TGA----AATAATTGCCA---------AGACCGTATCTCAGTGAtttgattgcatagaatgtatcgc
gi|3 : tttggccatttccccatTATCAACTGACTTGGATAGCTGTACACAGAAA-TTGTAACATGAAC---------TCCCAATGATCTCA---------A---------AGATCATATATAAGTGATT-TTA--GAT-----AAATAATAATTAGCCTCATAAATGGGA-ATCAAACTAAATAGCAG-ATACCGGTAT------AATTTATAAAAT---CACCACTGTCAGTGGAACTTT-CAAAATGACT-GT-TACCTCGAGAACTTTAACTTT------CA-TTATGCC
gi|2 : actacaattgtcatCTGCTCACAGAAATTTCCAGCATAAAC---------T-----TGA----A---------ATAAGTGTAAAGATTGTATCTCAGCGATGACTTTTAATTATT-AGAT-----T-------ATTTA---AATTTCTTACCGAATAGCTGAAAT--AATATGCTAGTAATGT----AATCAGCACCACGGTCAATGAGACTTTAGAAAATGGCTGCTTAGCAGCGCTAACCTCGAC-TT------CAGTGGTATTGGGTTTTCGTCGACTATTAACCATGCCAC-----GAGGAGGGAT-TTTGTGACCTATGCCTAG------CGGAGA--CACTTTGAC-AATCAAAACAATAGGG---TCATAGTAGT-G-T--AAAGAAGCCGCC---GATTT-----TGT-T-----TGTTAACGA--------------GAAACGTCA--TACA----T--G---TTC-GAAAA----TCAAACTTGAAA-CG-CAAGGCGTAatgaggtcagactttcttatctctggcatataatcaaaacaaaaggttcaaaatattgcaaaagctctgctgattttctttgataatgtttaagaaatggcatgaatttgatattcaagggatag
gi|5 : taTGT----ACTCAGCACCGCGATCAATTAAATTTTCCAAAATTACTGTTTTGCAGCGTTAATATCCGCGTTGTTATACA-TG-TACCTGGTTTCCATT------CA-TCATGTTGTAAAGTGGGGCTTAA----TA--ACCTCT--AGCGAT------GAAATACATTTGAAC-AGTCTAAACAAAA--------------AT-G---------A--CGCC---GATTT-----GGT-T-----TGATATCGATTGTTA-----AA-GAAAGATCG--TAAA----T--G---TTT-GAAAT----TCTAACTGGATA-TG-AAAAGCGTAA-TAt
gi|9 : AACAGTTA--AGACAG--TGGAAATTGACTGTGA--CATGTAAAA-TATTAAAGCAAA-TGGGATTCCAA-CACT-G-C--AAAAAGGCCAAC---ATTTT-----TCT-C-----TGATATTTATTGTTTTGTTTAA-TAAATATTG--TGAA----T--A---TTT-GTAAT----TCTAACACGATA-TG-CAAG
gi|6 : AT--TTGGCGTT--CGAAGA--CACTTCAAC-GGTCAAAACAAAATAG---T-AAACAAAT-G-G--TGAAAA-TCGCT----ATTT-----TTTGT-----TGACTCTGAACGTTT-----AA-GAAA---CGACTAGA----AC-G---ATT-GAAAT----TCTTACTTGATA-TG-AAAGGC-CACGTATTTTATA--GTTTCGTGTTGATC-AAAC---------AAAT-GTATAATGTTTAATGTTTGTACAGACAA
gi|8 : gatttataccctatgttggtaTGGTTTT--ATGGGA------TG--C-ATTCAAAACAAAAGGG---TCAGATTGGT-G-CAAAAAAAAG-CACT---GTTTT-----TCC-TA----TGATATCAACTGTTC-----AA-GAAA---CA--CAGC----G--GCTATTA-GAAAT----TCTATTGTGATA-CA-CAAGGCATAG-TA
gi|3 : acgataatgatatcagacaATCT--CTGG----CAT----AT-AATCAAAACAAAAGGT---TCAAAATATT-G-C--AAAAGCTCTGCT---GATTT-----TCT-T-----TGATA---A-TGTTT-----AA-GAAATGGCA--TG-----------------------------AATTTGATA-TT-CAAGGGATAa
gi|13 : actacaattgtcattatcaactgacttggatagctgtacacagaaattgtaacatgaactcccaatgatctcaaagatcatatataagtgattttagataaataataattagcctcataaatgggaatcaaactaaatagcagataccggtataatttataaaatcaccactgtcagtggaactttcaaaatgactgttacctcgagaactttaactttcattatgccatgaggtcagactttcttGAGA--CTCTTGAAC-GGTCAAAATGAAAGGC---TCAAAGTAGT-GTT--AAAGAAGTCGCC---GATTT-----TGT-CTTTTATAATATCAATTGTTT-----GA-AAAACATTG--TAA-------------CC-AAAAC----TCTAACTTGAGA-TG-CAAAGCAg
gi|12 : ttgAAA--CATTCAAAC-AGTCAAAACAGAAGGT---TCAAAGTTGT-G-C--GAAATA-CCGCT---AATTA-----AAT-T-----TAATACCGATTGTTT-----AA-GAAACGTTG--TAAA----T--A---TTC-GAAAT----TCTAACATGATG-TGTTAAGCCA-AG-T-CT---TGACGT---ATGT--Agagtaatgagg
gi|16 : ttGA--CATGTGAACTAAT-AAAACAAAATAT---TTTGAGCGGT-G-C--AATAAAGTCGCC---ATTTC-----TTT-T-----TGATACTGCTT-TTT------------TTTC----AAA----A--A---TGCTGAGAATATTTTTTACTTGATG-TA-CAAGATATAA-TAa
gi|10 : gtGG--CACTTTAAC-AGCCGAACCAAA-TGG---GTAAAATAATTG-C--AAAA-------------------------------------CGATTGGTT-----AA-GAAACGGTA--TAAT----G--G---TTT-GATAC----TCTTACTTGATA-TG-TAAAGCA
gi|19 : tttggctattccttatgctgtttggtggaactaatttaactcttgcgttcgatAAA-AGTCAAAACAAAGTG----TCAAAA-AAT-G-C--AAAAAA-TCGTC---AAAAT-----TGT-T-----TTATACCGATC-TCT-----AGTGAAATACC----AAG----ATCG---TTT-GAGAC----TTTAATATTATA-TG-CAGGTCA
gi|21 : tTCAAAACAAAAGGG---TCAACATAGT-G-T--AAAATGGCGGTT---GATTT-----TGT-T-----TGATACCTAGCGTTT-----AA-GAA-----------A----A--G---T---GAACA----T---ATTTGACAATG-CAAGGAATA
gi|18 : CAAAAAGG---CCAGTTTAAT-A----AAAAGGGCCGCCTTTGTTTTCTTTTTCT-T-----TAATACCGAGTGCTT-----AA-GAAACGTCA--CAAA----C--G---CTC-GA----------AACTCGATA-GG-CAAGGCgtgagatgt
gi|20 : gaacactatCC---AATCT-----TGT-T-----TGATGCCGATTATTT-----AA-GAAACATCG--TAAA----C--G---TTT-GAAA
gi|23 : attcatatgtgatgaggtggggactagaagatacttgaactgtcaacaccatcgtaG--TAAAGTTGA--G---TTC----------TCTAACTTGTTG-TG-CAAGGCATAC-T
gi|25 : taagtatttgatgagctagtaatc----TCTAATTTGTTA-TG-CAAGGCATatcaatacaaacaatt
4 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|22 ): TTTATACCCGTTGTCGTTTGTACTTCTGACGTTCGAAGACACTTGTAATGACAAAACAAAAAAGGTCAAACTAGTGCTTCAAAGTGTTTTTTTTG
Unaligned ( gi|26 ): CTAACGCAGATCAATCGGCGAATGACTGAGTATGATGACACTCGGTAAGAAATAATCAA
Unaligned ( gi|27 ): GGTATAACTAAATAAATAATTCATTTCATTTGTCGAAAGTCC
Unaligned ( gi|28 ): TATTACAAAAGAAAAAGCAATATAAAACTTACAA
Alignments
lowQualScore : 111111111111111111111111111
lowQualScore : 1111 2 111111 2222222 33333333333 2222222 2222222222 000000000000000000000000000 2222222 33333333333 666666666666666666666666666666666666666666 11111111 33333 8888888888888888 666666666666666 222 11 55555555555555555 11 2222222 55555555555555555555555555555555555555555 3333333 55555555 11 11 1
lowQualScore : 0000 66 5 55 444444 4 6 1111111 1 22222222222 0000000 3 0 1 00 1 2 1 5555555555 1 1 44 222222222222222222222222222 2222222 44 99999999999 1 1 66 666666666666666666666666666666666666666666 55555555 11111 0 7 6666666666666666 88 22 0 1 111111111111111 2 1 0 666 1 22 0 77 1 55555555555555555 55 1111111 3 66 66666666666666666666666666666666666666666 4444 44 33 222 33 444 6 1 2 33 8888888 5555 66666 1 2 88888 0 555 66666 2 00 2 444 4 3 1 2 2 1 2222222 4 44444444 2 66 88 88 5
lowQualScore : .... .. . .. ...... . . ....... . ........... ....... . . . .. . . . .......... . . .. ........................... ....... .. ........... . . .. .......................................... ........ ..... . . ................ .. .. . . ............... . . . ... . .. . .. . ................. .. ....... . .. ......................................... .... .. .. ... .. ... . . . .. ....... .... ..... . . ..... . ... ..... . .. . ... . . . . . . ....... . ........ . .. .. .. .
lowQualScore : 7777 99 0 11 444444 8 7 7777777 4 88888888888 8888888 8 2 0 55 0 5 0 0000000000 0 4 22 888888888888888888888888888 8888888 22 44444444444 4 0 22 555555555555555555555555555555555555555555 88888888 33333 7 3 0000000000000000 33 00 7 0 333333333333333 5 2 2 222 0 88 2 55 0 22222222222222222 22 8888888 5 55 66666666666666666666666666666666666666666 7777 11 22 666 44 444 5 8 5 33 6666666 6666 22222 9 5 88888 9 555 77777 7 77 7 777 7 0 0 7 7 0 0000000 0 00000000 5 55 00 55 5
consensus : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTGCATAACAAGTTAGAGA--AA--CTC-GTTT-TAC------GTCATTTCAAACAATGCTGATGATGAAG-GGAA-------TTGTGTACGCGAC-------TTATCTCCTC-CCGAGTTTGTTTTTACATATTCTGACACGCGATTGGCCGANTCAGTTGTTAGG-C--------CGTTCCCCTATTCAGCTGCCAAACTTGTCAACCG--T--AA--ATC--------AATATAA-CT--AGCGTGTGTTTA--TTTATATATATCGATTGATTTGGCTCGCTGCTCCCAGAAATTTCCAACATAAAC---------T-----TGA----A---------A---------AGATCGTATCTCAGCGATGACTTT-AAT-ACT-AAATAATAATTAG----ATAAA---GATATCAAACCGAATAGCTGAATA--AATATG-T--TAATGTAATCAGCACCGCGGTCAATGAAACTTTCC-AAAATGACTGTTTTGCAGCGCTAACCTCCGCGTT------CA-TGGTACCCGGTTTCCGTCGACTATCAACCATGCCGCGAGGTGGGACTT---AAC-TTA-ACCTATCGNGA-TTCTGA-G--ACACTTG-AAC-AGTCAAAACAAAAG-GG--T---CAAAGTAGT-G-CAAAAAA--GCCGCC---GATTT-----TNT-T-----TGATACCGA--TTGTTT-----AA-GAAACGTCGTA-AACGTTCGAAANTCTAACTTGATA-TG-CAAGGCATAGTACTT-GTG-CGTNTCGTGAACATTTNACCAAANNAATGTATAATGTTTAACGTTTGTACAGACAA
Reference ( family-1978 ) : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTGCATAACAAGTTAGAGA--AA--CTC-GTTT-TAC------GTCATTTCAAACAATGCTGATAACGAAG-GGAA-------TTGTGTACGCANC-------TTATCTCNTC-CCGAGTTTGTTTTTACATATTCTGACACGCGATTGNCCGANTCAGTTGTTAGG-C--------CGTTCNCCTATTCAGCTGCCAAACNTGTCAGCTG--T--AA--ATC--------AATATAA-CT--ANCGTNTGTTTA--TNTA-ATATATCGATTGATTTGGCTCGCTGCTCNCAGAAATTTCCAACATAAAC---------T-----TGA----A---------A---------AGATCGTATCTCAGTGATNATTNTTGATTATT-AGATAATAATTAGCCTCATNNATGGGATNTCNNACCGAATAGCNGAANNCCGGTATGCTAGTAATGTAATCAGCACCGCGGTCAATGAAACTTT-C-AAAATGACTGNTTTGCAGCGNTAACNTCGAC-TT------CA-TGGTACCGGGTTTCCGTCGACTATCAACCATGCCGCAAAGTGGGGNNN---AAC-TTA-ACCTATCGGGATTTCTGA-G--ACACTTG-AAC-AGTCAAAACAAAAG-GG--T---CAAAGTAGT-G-CAAAAAA--GCCGCC---GATTT-----TNT-T-----TGATACCGA--TTGTTT-----AA-GAAACGTCGTA-AANGTTCGAAANTCTAACTTGATA-TG-CAAGGCATANTACTTTATGACGTTTCGTG-----TTGATCAAACAAATGTATAATGTTTAATGTTTGTACAGACAA
gi|1 : TTGCATAACAAGTTAGA----------C-GTTT-GAC------GTCATTTGAAACAATGCTGATGATGAAT-GGAA-------TTGTAAACG-GTC-------TTATCTCTTCACTGAGTTTGTTTTTACATATTTTGACATGCGATTGGCCTATTCAATTGTTAGG-C--------CGTTCACCTATTCGACTGCCAAACTTGTCAACCG--TCAAA--ATCACAGTAATAATATAA-CTTGAGCGTGTGTTTA--TATATATATATCGATTTATTTAGTTCGCTGTTCCCAGAAATTTGTAACTTGAAC---------T-----TGA----A---------A---------AGATCGTATCTCAGCGATGACTG--AATAACTGAAATAATAAT-------ATAAA---AATATCAAAATGAAAAGTTGCATA--AATA------TAATGTAATCGGCACCGCGGTCATTAAAATTTTCC-GCAATGACTGGTGTGCAACGCGAACTTTTGCGTT------CA-TGATACCCGGTTTCTATTGGCTATCAACCATGTT-----ATGAGACTG---AACGTTA-ACATATTTGGATTTCTGA-G--ACATTTG-AAC-AGTCAAAACAAAAT-GG--T---CAAAGTAAT-G-CAAAAAA--GTCGCC---GATTT-----TGT-T-----TGATACCGA--TTGTTT-----AA-GAAGTCTCGTA-AAAGTTCGAAAGTCTAACTTGATA-TG-CAAGGCATACTACTTGGTG-TGTATC-TAAACATTTTACCAAAATAA--TATAATG--TAACATTTAT-CAAATAA
gi|10 : gtcctcgtcctatacgttctacctattcataGGAACT---AAT-TTA-AC-TCTTGCG--TTC-GATG--GCACTTT-AAC-AGCCGAACCAAATG-GG--T----AAAATAATTG-CAAAA---------------------------------------CGA--TTGGTT-----AA-GAAACGGTATA-ATGGTTTGATACTCTTACTTGATA-TG-TAAAGCA
gi|11 : tttggctattccttatgctgtttggtA--AA--CTCTGTTT-TAC------GGCGATTTAAATGATGCTAATACCAAAA-GGAA-------TTGTGTATGTGACATGCGATTTATCTCCT-----------TTTTTACATGTTCTGACACGCTGCTGTTTGATTCAGTTGTTAGATC--------TTTTCCCCTATTCAGCTGTCA
gi|12 : A-A--ACATTCA-AAC-AGTCAAAACAGAAG-GT--T---CAAAGTTGT-G-CGAAATA---CCGCT---AATTA-----AAT-T-----TAATACCGA--TTGTTT-----AA-GAAACGTTGTA-AATATTCGAAATTCTAACATGATG-TGTTAAGCCA-AGT-CT---TGACGT
gi|13 : ttGA-G--ACTCTTG-AAC-GGTCAAAATGAAAG-GC--T---CAAAGTAGT-GTTAAAGAA--GTCGCC---GATTT-----TGT-CTTTTATAATATCAA--TTGTTT-----GA-AAAACATTGTA-A----CCAAAACTCTAACTTGAGA-TG-CAAAGCAGAGTAatgtaa
gi|14 : ttgTTTGG-C--------CATTTCCCCATTCAGCTGTCAATCT---------------A--ATA--------ATTACTA-C---AGTGTATGTTTA--TTTA-A---ATCCTTTGATTTGACTCGCTGTTCCCAGAAATTTCCAGCATAAAC---------T-----TGA----AATAATTGCCA---------AGACCGTATCTCAGTGAatgagg
gi|15 : GG-A--------CGTTACTCCATTCAGCTGCCAATCCTGTC-------T--A----TC--------A-TATAAGCT--A-CGTTTGTTTA--T--------ATTGATAGATTTTGCTCGCTGCTCTCAGAAATTTCCAACATAAAC---------T-----TGA----
gi|16 : tt-G--ACATGTG-AACTAAT-AAAACAAAAT-AT--T---TTGAGCGGT-G-CAATAAA--GTCGCC---ATTTC-----TTT-T-----TGATACTGCTTTTTTTT-----CA-AAAATGCTGAG-AATATT------TTTTACTTGATG-TA-CAAGATATAATAtttgattgcatagaatgtatcgc
gi|17 : gtTTGCATAACAAGTTAGAGA--AC--CTCTACTT-TAC------ATCATTTCAAACAATGTTGGTGATGAAGAGGAAGTGAACCTTGCGAACATGAC-------TAAACTCCAC-TC-AGTTTGCTTTTGCATA
gi|18 : tacgatCAAAAA-GG--C---CAGTTTAAT-A--AAAAGG--GCCGCCTTTGTTTTCTTTTTCT-T-----TAATACCGA--GTGCTT-----AA-GAAACGTCACA-AACGCTCGAAACTC------GATA-GG-CAAGGC
gi|19 : gaacactat-AAA-AGTCAAAACAAA-G-TG--T---CAAAA-AAT-G-CAAAAAA---TCGTC---AAAAT-----TGT-T-----TTATACCGA--TC-TCT-----AGTGAAATACCAAG-ATCGTTTGAGACTTTAATATTATA-TG-CAGGTCA
gi|2 : tCTGCTCACAGAAATTTCCAGCATAAAC---------T-----TGA----A---------ATAAGTGTAAAGATTGTATCTCAGCGATGACTTTTAATTATT-AGATTAT--TTAA-------------ATTTCTTACCGAATAGCTGAAAT--AATATGCTAGTAATGTAATCAGCACCACGGTCAATGAGACTTT-AGAAAATGGCTGCTTAGCAGCGCTAACCTCGAC-TT------CAGTGGTATTGGGTTTTCGTCGACTATTAACCATGCCACGAGGAGGGATTTTGTGAC-CTATGCCTAGCGG--------A-G--ACACTTT-GAC-AATCAAAACAATAG-GG--T---CATAGTAGT-G-TAAAGAA--GCCGCC---GATTT-----TGT-T-----TGTTAACG---------------A-GAAACGTCATA-CATGTTCGAAAATCAAACTTGAAA-CG-CAAGGCGTA
gi|20 : taA-G--ATACTTG-AAC-TGTCAACACCA--------T---C---GTA------------------CC---AATCT-----TGT-T-----TGATGCCGA--TTATTT-----AA-GAAACATCGTA-AACGTTTGAAAt
gi|21 : attcatatgtgatgaggtggggactagaTCAAAACAAAAG-GG--T---CAACATAGT-G-TAAAATG--GCGGTT---GATTT-----TGT-T-----TGATACCTA--GCGTTT-----AA-GAAAAGT------------GAACAT---ATTTGACAATG-CAAGGAATAGT
gi|22 : TTCGAA-G--ACACTTGTAAT--GACAAAACAAAAAAGG--T---CAAACTAGT-G-CTTCAAA--GT--------GTTT-----TTT-T-----TGgagatgt
gi|23 : tttatacccgttgtcgtttgtacttctgacgTCTAACTTGTTG-TG-CAAGGCATACT
gi|23 : taagtatttgatgagctagtaatcTTGCACAACAAGTTAGAG---AA--CTCAACTT-TAC------ATCAATACAAACAATgaactcaactttacatcaatacaaacaatt
gi|24 : taagtatttgatgagctagtaatcagtatgccTGCATGGCAAGTCAGAGA--AA--CTCTGTTT-TAT------GTCATTTCAAACAAt
gi|25 : gttgtttacattacgattactgcatctccTTGCATAACAAATTAGAGA--AA--CTC-TTGTATAC------ATTATTCCATACAATGGTCTTAATGAAG-GGAA-------TTGc
gi|3 : atgccTATCAACTGACTTGGATAGCTGTACACAGAAATTGT-AACATGAAC---------TCCCAATGATCTCA---------A---------AGATCATATATAAGTGAT---TTTAGAT-----AAATAATAATTAGCCTCATAAATGGGA-ATCAAACTAAATAGCAGA-TACCGGTATAAT--TTATAAAATCA---CCACTGTCAGTGGAACTTT-C-AAAATGACTGTT-----------ACCTCGA---------------GAAC----TTT-----AACTTTCA-TTATGCCA-----TGAGGTCA---GAC-TTT--CTTATC------TCTGG-----CAT-----AT-AATCAAAACAAAAG-GT--T---CAAAATATT-G-CAAAAGC--TCTGCT---GATTT-----TCT-T-----TGATA---A---TGTTT-----AA-GAAATGGCATG-AAT---------------TTGATA-TT-CAAGGGATA
gi|4 : actacaattgtcatTGCATAACAAGTTAGAGC--AA--CTCAGTTT-TACATGTATGTCATTTTAAACAATGCTGATGAAGAAG-GAGA-------TTGTGTATGCAAC-------TTATCTCATCTCTGAGTTTGTTTTTACATATTGTTACACCTGATTGGCCGAATCAATT----GG-C--------CATTCCCTTATTTAGCTGTCAAACATGTCAATTGAAT--GATCATC--------GACATAA-TT--ACTATG-GTTTATGTTTATATATATCAATTGATTTGACTCACTGCTCCCAGAAATTT-CAACATAAACTAGAAATGAT-----TGA----A---------A---------AGATTGTATCTCAATGATAATTTTg
gi|5 : TGTACTCAGCACCGCGATCAATTAAATTTTCC-AAAATTACTGTTTTGCAGCGTTAATATCCGCGTTGTTATACA-T-GTACCTGGTTTCCAT------TC-ATCATGTTGTAAAGTGGGGCTT---AA---TA-ACCTCTAGCGA----TGA-AATACATTTG-AAC-AGTCTAAA---------------------------CAAAAAT--GACGCC---GATTT-----GGT-T-----TGATATCGA--TTGTTA-----AA-GAAAGATCGTA-AATGTTTGAAATTCTAACTGGATA-TG-AAAAGCGTAATA
gi|6 : TTCGAA-G--ACACTTC-AAC-GGTCAAAACAAAAT-AG--TAAACAAA-TGGT-G-----AAA--ATCGCT----ATTT-----TTTGT-----TGACTCTGA--ACGTTT-----AA-GAAACGAC-TAGAACGATTGAAATTCTTACTTGATA-TG-AAAGGCCACGTATTTTATA--GTTTCGTG-----TTGATCAAACAAATGTATAATGTTTAATGTTTGTACAGACAA
gi|7 : gatttataccctatgttggtaatttggcgTAACATGATAGATATTAAGTTTT-GTTT----------GTCATTTTGTACAACGCTGATAATGAAG-GGAA-------TTATGTACGTGAT-------CTATCTCTCC-CCGAGCCTG---TTACATATTCTGACACGTGATTAACAAAGTCAGTTGTTAGA-CCGTTCCCACGTTCCCCTATTCAGCTGCCAAAC
gi|8 : C-ATTCAAAACAAAAG-GG--T---CAGATTGGT-G-CAAAAAAAAGC-ACT---GTTTT-----TCC-TA----TGATATCAA--CTGTTC-----AA-GAAACACAGCG-GCTATTAGAAATTCTATTGTGATA-CA-CAAGGCATAGTAa
gi|9 : acgataatgatatcagacatggttttatgggatgCTGT-G--ACATGTA-AAA-TATTAAAGCAAATG-GGATT---CCAA-CACT-G-CAAAAAG--GCCAAC---ATTTT-----TCT-C-----TGATATTTA--TTGTTTTGTTTAA-TAAATATTGTG-AATATTTGTAATTCTAACACGATA-TG-CAAGa
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|26 ): CTAACGCAGATCAATCGGCGAATGACTGAGTATGATGACACTCGGTAAGAAATAATCAA
Unaligned ( gi|27 ): GGTATAACTAAATAAATAATTCATTTCATTTGTCGAAAGTCC
Unaligned ( gi|28 ): TATTACAAAAGAAAAAGCAATATAAAACTTACAA
Alignments
lowQualScore : 1111 2 111111 2222222 2222222 2222222 2222222222 8888888888888888888888888888888888888 22222222222 666666666666666666666666666666666666666666 666666666 4444444444444444444 1111 55555555 333333 1 1 6666666666666666666666666666 444444 33333333 11 11 1
lowQualScore : 0000 66 5 55 444444 6 1111111 1 9 6666666 1111111 3 0 0 00 1 2 1 5555555555 1 44 6666666666666666666666666666666666666 8 33 77777777777 1 1 6 666666666666666666666666666666666666666666 6 999999999 4444444444444444444 7 0 6666 11111111 33 1 0 8 0 3 3 6 888888 3 6 3 0 2 0 3 66 2 1 1111111111111111111111111111 4444 44 33 222 33 444 6 1 2 33 8888888 5555 66666 1 2 88888 0 555 66666 2 00 2 44 4 4 2 2 222222 1 11111111 1 22 88 88 5
lowQualScore : .... .. . .. ...... . ....... . . ....... ....... . . . .. . . . .......... . .. ..................................... . .. ........... . . . .......................................... . ......... ................... . . .... ........ .. . . . . . . . ...... . . . . . . . .. . . ............................ .... .. .. ... .. ... . . . .. ....... .... ..... . . ..... . ... ..... . .. . .. . . . . ...... . ........ . .. .. .. .
lowQualScore : 7777 99 0 11 444444 7 7777777 4 6 0000000 2222222 8 2 2 55 0 5 0 0000000000 4 55 0000000000000000000000000000000000000 8 55 66666666666 4 0 7 555555555555555555555555555555555555555555 4 666666666 0000000000000000000 3 7 7777 33333333 22 2 2 8 8 7 7 7 333333 3 7 7 7 0 8 5 55 8 0 7777777777777777777777777777 7777 11 22 666 44 444 5 8 5 33 6666666 6666 22222 9 5 88888 9 555 77777 7 77 7 00 7 0 7 7 000000 0 00000000 0 00 00 55 5
consensus : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTGCATAACAAGTTAGAGA--AA--CTC-GTTT-TAC------GTCATTTCAAACAATGCTGATGATGAAG-GGAA-------TTGTGTACGCGAC-------TTATCTCCTC-CCGAGTTTGTTTTTACATATTCTGACACGCGATTGGCCGANTCAGTTGTTAGG-C--------CGTTCCCCTATTCAGCTGCCAAACTTGTCAATCG--T--AA--ATCA--------ATATAA-CT--AGCGTGTGTTTA--TTTATATATATCGATTGATTTGGCTCGCTGCTCCCAGAAATTTCCAACATAAAC---------T-----TGA----A---------A---------AGATCGTATCTCAGCGATGACTTTAG-A--T-AAATAATAATTAG----ATAA---A---AATATCAAACCGAATAGCTGA-ANNAATAT-GCTA---ATGTAATCGGCACCGCGGTCAATGAAACTTTCCAAAATGACTGTTTTGCAGCGCTAACNTCCGCGTT------CA-TGGTACCCGGTTTCCGTCGACTATCAACCATGCCGTGAGGTGGGACT---TAAC-TTA-ACCTATCGCGATT-CTGA-G--ACACTTG-AAC-AGTCAAAACAAAAG-GG--T---CAAAGTAGT-G-CAAAAAA--GCCGCC---GATTT-----TNT-T-----TGATACCGA--TTGTTT-----AA-GAAACGTCGTA-AACGTTCGAAACTCTAACTTGATA-TG-CAAGGCATAGTACTT-GTAC-GTATCGTGAACATTTNACCAAANNAATGTATAATGTTTAACGTTTGTACAGACAA
Reference ( family-1978 ) : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTGCATAACAAGTTAGAGA--AA--CTC-GTTT-TAC------GTCATTTCAAACAATGCTGATGATGAAG-GGAA-------TTGTGTACGCGAC-------TTATCTCCTC-CCGAGTTTGTTTTTACATATTCTGACACGCGATTGGCCGANTCAGTTGTTAGG-C--------CGTTCCCCTATTCAGCTGCCAAACTTGTCAACCG--T--AA--ATCA--------ATATAA-CT--AGCGTGTGTTTA--TTTATATATATCGATTGATTTGGCTCGCTGCTCCCAGAAATTTCCAACATAAAC---------T-----TGA----A---------A---------AGATCGTATCTCAGCGATGACTTTAATA-CT-AAATAATAATTAG----ATAA---A---GATATCAAACCGAATAGCTGA-ATAAATAT-GTTA---ATGTAATCAGCACCGCGGTCAATGAAACTTTCCAAAATGACTGTTTTGCAGCGCTAACCTCCGCGTT------CA-TGGTACCCGGTTTCCGTCGACTATCAACCATGCCGCGAGGTGGGACT---TAAC-TTA-ACCTATCGNGATT-CTGA-G--ACACTTG-AAC-AGTCAAAACAAAAG-GG--T---CAAAGTAGT-G-CAAAAAA--GCCGCC---GATTT-----TNT-T-----TGATACCGA--TTGTTT-----AA-GAAACGTCGTA-AACGTTCGAAANTCTAACTTGATA-TG-CAAGGCATAGTACTT-GTGC-GTNTCGTGAACATTTNACCAAANNAATGTATAATGTTTAACGTTTGTACAGACAA
gi|1 : TTGCATAACAAGTTAGA----------C-GTTT-GAC------GTCATTTGAAACAATGCTGATGATGAAT-GGAA-------TTGTAAACG-GTC-------TTATCTCTTCACTGAGTTTGTTTTTACATATTTTGACATGCGATTGGCCTATTCAATTGTTAGG-C--------CGTTCACCTATTCGACTGCCAAACTTGTCAACCG--TCAAA--ATCACAGTAATAATATAA-CTTGAGCGTGTGTTTA--TATATATATATCGATTTATTTAGTTCGCTGTTCCCAGAAATTTGTAACTTGAAC---------T-----TGA----A---------A---------AGATCGTATCTCAGCGATGACTG-AATAACTGAAATAATAAT-------ATAA---A---AATATCAAAATGAAAAGTTGC-ATAAATAT----A---ATGTAATCGGCACCGCGGTCATTAAAATTTTCCGCAATGACTGGTGTGCAACGCGAACTTTTGCGTT------CA-TGATACCCGGTTTCTATTGGCTATCAACCATGTTATGAG-----ACT---GAACGTTA-ACATATTTGGATTTCTGA-G--ACATTTG-AAC-AGTCAAAACAAAAT-GG--T---CAAAGTAAT-G-CAAAAAA--GTCGCC---GATTT-----TGT-T-----TGATACCGA--TTGTTT-----AA-GAAGTCTCGTA-AAAGTTCGAAAGTCTAACTTGATA-TG-CAAGGCATACTACTTGGTGT-GTATC-TAAACATTTTACCAAAATAA--TATAATG--TAACATTTAT-CAAATAA
gi|10 : gtcctcgtcctatacgttctacctattcataATGCTGTTTGGTGGAACT----AAT-TTA-AC-TCTTGCG-TT-C-GATG--GCACTTT-AAC-AGCCGAACCAAATG-GG--T----AAAATAATTG-CAAAA---------------------------------------CGA--TTGGTT-----AA-GAAACGGTATA-ATGGTTTGATACTCTTACTTGATA-TG-TAAAGCA
gi|11 : tttggctattccttA--AA--CTCTGTTT-TAC------GGCGATTTAAATGATGCTAATACCAAAA-GGAA-------TTGTGTATGTGACATGCGATTTATCTCCT-----------TTTTTACATGTTCTGACACGCTGCTGTTTGATTCAGTTGTTAGATC--------TTTTCCCCTATTCAGCTGTCA
gi|12 : A-A--ACATTCA-AAC-AGTCAAAACAGAAG-GT--T---CAAAGTTGT-G-CGAAATA---CCGCT---AATTA-----AAT-T-----TAATACCGA--TTGTTT-----AA-GAAACGTTGTA-AATATTCGAAATTCTAACATGATG-TGTTAAGCCA-AGT-CTT-G-AC-GTAT
gi|13 : ttGA-G--ACTCTTG-AAC-GGTCAAAATGAAAG-GC--T---CAAAGTAGT-GTTAAAGAA--GTCGCC---GATTT-----TGT-CTTTTATAATATCAA--TTGTTT-----GA-AAAACATTGTA-A----CCAAAACTCTAACTTGAGA-TG-CAAAGCAGAGTAgtaa
gi|14 : ttgTTTGG-C--------CATTTCCCCATTCAGCTGTCAATCT----AAT--------A--ATTA--------CTA-----C--AGTGTATGTTTA--TTTA-A---ATCCTTTGATTTGACTCGCTGTTCCCAGAAATTTCCAGCATAAAC---------T-----TGA----AATAATTGCCA---------AGACCGTATCTCAGTGAatgagg
gi|15 : GG-A--------CGTTACTCCATTCAGCTGCCAATCCTGTC-------T--A----TCA---------TATAAGCT--A-CGTTTGTTTA--T--------ATTGATAGATTTTGCTCGCTGCTCTCAGAAATTTCCAACATAAAC---------T-----TGA----
gi|16 : tt-G--ACATGTG-AACTAAT-AAAACAAAAT-AT--T---TTGAGCGGT-G-CAATAAA--GTCGCC---ATTTC-----TTT-T-----TGATACTGCTTTTTTTT-----CA-AAAATGCTGAG-AATATT------TTTTACTTGATG-TA-CAAGATATAATAtttgattgcatagaatgtatcgc
gi|17 : gtTTGCATAACAAGTTAGAGA--AC--CTCTACTT-TAC------ATCATTTCAAACAATGTTGGTGATGAAGAGGAAGTGAACCTTGCGAACATGAC-------TAAACTCCAC-TC-AGTTTGCTTTTGCATA
gi|18 : tacgatCAAAAA-GG--C---CAGTTTAAT-A--AAAAGG--GCCGCCTTTGTTTTCTTTTTCT-T-----TAATACCGA--GTGCTT-----AA-GAAACGTCACA-AACGCTCGAAACTC------GATA-GG-CAAGGC
gi|19 : gaacactat-AAA-AGTCAAAACAAA-G-TG--T---CAAAA-AAT-G-CAAAAAA---TCGTC---AAAAT-----TGT-T-----TTATACCGA--TC-TCT-----AGTGAAATACCAAG-ATCGTTTGAGACTTTAATATTATA-TG-CAGGTCA
gi|2 : tCTGCTCACAGAAATTTCCAGCATAAAC---------T-----TGA----A---------ATAAGTGTAAAGATTGTATCTCAGCGATGACTTT-----------TAATTATTAG----ATTATTTA---AATTTCTTACCGAATAGCTGA-AATAATAT-GCTAGTAATGTAATCAGCACCACGGTCAATGAGACTTTAGAAAATGGCTGCTTAGCAGCGCTAACCTCGAC-TT------CAGTGGTATTGGGTTTTCGTCGACTATTAACCATGCCACGAGGAGGGATTTTGTGAC-CTATGCCTAGCG--------GA-G--ACACTTT-GAC-AATCAAAACAATAG-GG--T---CATAGTAGT-G-TAAAGAA--GCCGCC---GATTT-----TGT-T-----TGTTAACG---------------A-GAAACGTCATA-CATGTTCGAAAATCAAACTTGAAA-CG-CAAGGCGTA
gi|20 : taA-G--ATACTTG-AAC-TGTCAACACCA--------T---C---GTA------------------CC---AATCT-----TGT-T-----TGATGCCGA--TTATTT-----AA-GAAACATCGTA-AACGTTTGAAAt
gi|21 : attcatatgtgatgaggtggggactagaTCAAAACAAAAG-GG--T---CAACATAGT-G-TAAAATG--GCGGTT---GATTT-----TGT-T-----TGATACCTA--GCGTTT-----AA-GAAAAGT---G-AACAT-----------ATTTGACAATG-CAAGGAATAGT
gi|22 : TT-CGAA-G--ACACTTGTAAT--GACAAAACAAAAAAGG--T---CAAACTAGT-G-CTTCAAA--GT--------GTTT-----TTT-T-----TGgagatgt
gi|23 : tttatacccgttgtcgtttgtacttctgacgTCTAACTTGTTG-TG-CAAGGCATA
gi|23 : taagtatttgatgagctagtaatcagTTGCACAACAAGTTAGAG---AA--CTCAACTT-TAC------ATCAATACAAACAATgaactcaactttacatcaatacaaacaatt
gi|24 : taagtatttgatgagctagtaatcagtatgccTGCATGGCAAGTCAGAGA--AA--CTCTGTTT-TAT------GTCATTTCAAACAAt
gi|25 : gttgtttacattacgattactgcatctccTTGCATAACAAATTAGAGA--AA--CTC-TTGTATAC------ATTATTCCATACAATGGTCTTAATGAAG-GGAA-------TTGc
gi|3 : atgccTATCAACTGACTTGGATAGCTGTACACAGAAA-TTGTAACATGAAC---------TCCCAATGATCTCA---------A---------AGATCATATATAAG---TGATTTTAG-A--T-AAATAATAATTAGCCTCATAA---ATGGGA-ATCAAACTAAATAGCAGATACCGGTATAATTT---ATAAAAT---CACCACTGTCAGTGGAACTTT-CAAAATGACTGTT
gi|3 : actacaattgtcatACTTTCA-TTATGCCATGAGGTCAGACT---T-----T---CTTATC-----T-CTGG-----CAT-----AT-AATCAAAACAAAAG-GT--T---CAAAATATT-G-CAAAAGC--TCTGCT---GATTT-----TCT-T-----TGATA---A---TGTTT-----AA-GAAATGGCATG----------------AATTTGATA-TT-CAAGGGATAGacctcgagaactttaactttcattatgccatgaggtcagactttcttatctctggcatataatcaaaacaaaaggttcaaaatattgcaaaagctctgctgattttctttgataatgtttaagaaatggcatgaatttgatattcaagggatag
gi|4 : actacaattgtcattatcaactgacttggatagctgtacacagaaattgtaacatgaactcccaatgatctcaaagatcatatataagtgattttagataaataataattagcctcataaatgggaatcaaactaaatagcagataccggtataatttataaaatcaccactgtcagtggaactttcaaaatgactgttacctcgagaactttaTGCATAACAAGTTAGAGC--AA--CTCAGTTT-TACATGTATGTCATTTTAAACAATGCTGATGAAGAAG-GAGA-------TTGTGTATGCAAC-------TTATCTCATCTCTGAGTTTGTTTTTACATATTGTTACACCTGATTGGCCGAATCAATT----GG-C--------CATTCCCTTATTTAGCTGTCAAACATGTCAATTGAAT--GATCATCG--------ACATAA-TT--ACTATG-GTTTATGTTTATATATATCAATTGATTTGACTCACTGCTCCCAGAAATTT-CAACATAAACTAGAAATGAT-----TGA----A---------A---------AGATTGTATCTCAATGATAATTTT
gi|5 : TGTACTCAGCACCGCGATCAATTAAATTTTCCAAAATTACTGTTTTGCAGCGTTAATATCCGCGTTGTTATACA-T-GTACCTGGTTTCCAT------TC-ATCATGTTGTAAAGTGGGGCT---TAA---TA-ACCTCTAGCGA----TGA-AATACATTTG-AAC-AGTCTAAA---------------------------CAAAAAT--GACGCC---GATTT-----GGT-T-----TGATATCGA--TTGTTA-----AA-GAAAGATCGTA-AATGTTTGAAATTCTAACTGGATA-TG-AAAAGCGTAATA
gi|6 : TT-CGAA-G--ACACTTC-AAC-GGTCAAAACAAAAT-AG--TAAACAAA-TGGT-G-----AAA--ATCGCT----ATTT-----TTTGT-----TGACTCTGA--ACGTTT-----AA-GAAACGAC-TAGAACGATTGAAATTCTTACTTGATA-TG-AAAGGCCACGTATTT--TATAGTTTCGTG-----TTGATCAAACAAATGTATAATGTTTAATGTTTGTACAGACAA
gi|7 : gatttataccctatgttggtaatttggcgTAACATGATAGATATTAAGTTTT-GTTT----------GTCATTTTGTACAACGCTGATAATGAAG-GGAA-------TTATGTACGTGAT-------CTATCTCTCC-CCGAGCCTG---TTACATATTCTGACACGTGATTAACAAAGTCAGTTGTTAGA-CCGTTCCCACGTTCCCCTATTCAGCTGCCAAAC
gi|8 : C-ATTCAAAACAAAAG-GG--T---CAGATTGGT-G-CAAAAAAAAGC-ACT---GTTTT-----TCC-TA----TGATATCAA--CTGTTC-----AA-GAAACACAGCG-GCTATTAGAAATTCTATTGTGATA-CA-CAAGGCATAGTAa
gi|9 : acgataatgatatcagacatggttttatgggatg-CTGT-G--ACATGTA-AAA-TATTAAAGCAAATG-GGATT---CCAA-CACT-G-CAAAAAG--GCCAAC---ATTTT-----TCT-C-----TGATATTTA--TTGTTTTGTTTAA-TAAATATTGTG-AATATTTGTAATTCTAACACGATA-TG-CAAGa
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|26 ): CTAACGCAGATCAATCGGCGAATGACTGAGTATGATGACACTCGGTAAGAAATAATCAA
Unaligned ( gi|27 ): GGTATAACTAAATAAATAATTCATTTCATTTGTCGAAAGTCC
Unaligned ( gi|28 ): TATTACAAAAGAAAAAGCAATATAAAACTTACAA
Alignments
lowQualScore : 1111 2 111111 2222222 2222222 2222222 2222222222 99999999999999999999999 33333333 22222222222 666666666666666666666666666666666666666666 33333333 444444444444444444 1 444444444 333333 1 1 5555555555555555555555555555 333333 33333333 11 11 1
lowQualScore : 0000 66 5 55 444444 6 1111111 1 9 6666666 1111111 3 0 0 00 1 2 1 5555555555 1 44 44444444444444444444444 00000000 33 66666666666 1 1 66 666666666666666666666666666666666666666666 6 0 55555555 333333333333333333 7 0 3 22 222222222 66 1 0 8 0 1 3 6 888888 3 6 3 0 2 0 3 66 3 1 9999999999999999999999999999 4444 44 33 222 33 444 6 1 2 33 8888888 5555 66666 1 2 88888 0 555 66666 2 00 2 44 4 3 2 2 777777 11111111 1 22 88 88 5
lowQualScore : .... .. . .. ...... . ....... . . ....... ....... . . . .. . . . .......... . .. ....................... ........ .. ........... . . .. .......................................... . . ........ .................. . . . .. ......... .. . . . . . . . ...... . . . . . . . .. . . ............................ .... .. .. ... .. ... . . . .. ....... .... ..... . . ..... . ... ..... . .. . .. . . . . ...... ........ . .. .. .. .
lowQualScore : 7777 99 0 11 444444 7 7777777 4 6 0000000 2222222 8 2 2 55 0 5 0 0000000000 4 55 55555555555555555555555 00000000 55 44444444444 4 0 22 555555555555555555555555555555555555555555 5 2 11111111 333333333333333333 3 7 3 00 000000000 88 2 2 8 8 0 7 7 333333 3 7 7 7 0 8 5 55 2 0 9999999999999999999999999999 7777 11 22 666 44 444 5 8 5 33 6666666 6666 22222 9 5 88888 9 555 77777 7 77 7 00 7 7 7 7 333333 00000000 0 00 00 55 5
consensus : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTGCATAACAAGTTAGAGA--AA--CTC-GTTT-TAC------GTCATTTCAAACAATGCTGATGATGAAG-GGAA-------TTGTGTACGCGAC-------TTATCTCCTC-CCGAGTTTGTTTTTACATATTCTGACACGCGATTGGCCGANTCAGTTGTTAGG-C--------CGTTCCCCTATTCAGCTGCCAAACTTGTCAATCG--T--GA--ATC--------GATATAA-CT--AGCGTGTGTTTA--TTTATATATATCGATTGATTTGGCTCGCTGCTCCCAGAAATTTCCAACATAAAC---------T-----TGA----A---------A---------AGATCGTATCTCAGCGATGACTT--TAG-T-AAATAATAATTAG----ATAA---A---AATATCAAACCGAATAGCTGA-ANNAATAT-GCTA---ATGTAATCGGCACCGCGGTCAATGAAACTTTCCAAAATGACTGTTTTGCAGCGCTAACNTCCGCGTT------CA-TGGTACCCGGTTTCCGTCGACTATCAACCATGCCGTGAGGTGGGACT---TAAC-TTA-ACCTATCGCG--TTCTGA-G--ACACTTG-AAC-AGTCAAAACAAAAG-GG--T---CAAAGTAGT-G-CAAAAAA--GCCGCC---GATTT-----TNT-T-----TGATACCGA--TTGTTT-----AA-GAAACGTCGTA-AACGTTCGAAACTCTAACTTGATA-TG-CAAGGCATAGTACTT-GTAC-GTATCGTGAACATTTNACCAAANNAATGTATAATGTTTAACGTTTGTACAGACAA
Reference ( family-1978 ) : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTGCATAACAAGTTAGAGA--AA--CTC-GTTT-TAC------GTCATTTCAAACAATGCTGATGATGAAG-GGAA-------TTGTGTACGCGAC-------TTATCTCCTC-CCGAGTTTGTTTTTACATATTCTGACACGCGATTGGCCGANTCAGTTGTTAGG-C--------CGTTCCCCTATTCAGCTGCCAAACTTGTCAATCG--T--AA--ATC--------AATATAA-CT--AGCGTGTGTTTA--TTTATATATATCGATTGATTTGGCTCGCTGCTCCCAGAAATTTCCAACATAAAC---------T-----TGA----A---------A---------AGATCGTATCTCAGCGATGACTT--TAGAT-AAATAATAATTAG----ATAA---A---AATATCAAACCGAATAGCTGA-ANNAATAT-GCTA---ATGTAATCGGCACCGCGGTCAATGAAACTTTCCAAAATGACTGTTTTGCAGCGCTAACNTCCGCGTT------CA-TGGTACCCGGTTTCCGTCGACTATCAACCATGCCGTGAGGTGGGACT---TAAC-TTA-ACCTATCGCGA-TTCTGA-G--ACACTTG-AAC-AGTCAAAACAAAAG-GG--T---CAAAGTAGT-G-CAAAAAA--GCCGCC---GATTT-----TNT-T-----TGATACCGA--TTGTTT-----AA-GAAACGTCGTA-AACGTTCGAAACTCTAACTTGATA-TG-CAAGGCATAGTACTT-GTAC-GTATCGTGAACATTTNACCAAANNAATGTATAATGTTTAACGTTTGTACAGACAA
gi|1 : TTGCATAACAAGTTAGA----------C-GTTT-GAC------GTCATTTGAAACAATGCTGATGATGAAT-GGAA-------TTGTAAACG-GTC-------TTATCTCTTCACTGAGTTTGTTTTTACATATTTTGACATGCGATTGGCCTATTCAATTGTTAGG-C--------CGTTCACCTATTCGACTGCCAAACTTGTCAACCG--TCAAA--ATCACAGTAATAATATAA-CTTGAGCGTGTGTTTA--TATATATATATCGATTTATTTAGTTCGCTGTTCCCAGAAATTTGTAACTTGAAC---------T-----TGA----A---------A---------AGATCGTATCTCAGCGATGACTGAATAACTGAAATAATAAT-------ATAA---A---AATATCAAAATGAAAAGTTGC-ATAAATA----TA---ATGTAATCGGCACCGCGGTCATTAAAATTTTCCGCAATGACTGGTGTGCAACGCGAACTTTTGCGTT------CA-TGATACCCGGTTTCTATTGGCTATCAACCATGTTATGA-----GACT---GAACGTTA-ACATATTTGGATTTCTGA-G--ACATTTG-AAC-AGTCAAAACAAAAT-GG--T---CAAAGTAAT-G-CAAAAAA--GTCGCC---GATTT-----TGT-T-----TGATACCGA--TTGTTT-----AA-GAAGTCTCGTA-AAAGTTCGAAAGTCTAACTTGATA-TG-CAAGGCATACTACTTGGTGT-GTATC-TAAACATTTTACCAAAATAA--TATAATG--TAACATTTAT-CAAATAA
gi|10 : gtcctcgtcctatacgttctacctattcataATGCTGTTTGGTGGAACT----AAT-TTA-AC-TCTTGCG--TTC-GATG--GCACTTT-AAC-AGCCGAACCAAATG-GG--T----AAAATAATTG-CAAAA---------------------------------------CGA--TTGGTT-----AA-GAAACGGTATA-ATGGTTTGATACTCTTACTTGATA-TG-TAAAGCA
gi|11 : tttggctattccttA--AA--CTCTGTTT-TAC------GGCGATTTAAATGATGCTAATACCAAAA-GGAA-------TTGTGTATGTGACATGCGATTTATCTCCT-----------TTTTTACATGTTCTGACACGCTGCTGTTTGATTCAGTTGTTAGATC--------TTTTCCCCTATTCAGCTGTCA
gi|12 : A-A--ACATTCA-AAC-AGTCAAAACAGAAG-GT--T---CAAAGTTGT-G-CGAAATA---CCGCT---AATTA-----AAT-T-----TAATACCGA--TTGTTT-----AA-GAAACGTTGTA-AATATTCGAAATTCTAACATGATG-TGTTAAGCCA-AGT-CTT-G-AC-GTAT
gi|13 : ttGA-G--ACTCTTG-AAC-GGTCAAAATGAAAG-GC--T---CAAAGTAGT-GTTAAAGAA--GTCGCC---GATTT-----TGT-CTTTTATAATATCAA--TTGTTT-----GA-AAAACATTGTA-A----CCAAAACTCTAACTTGAGA-TG-CAAAGCAGAGTAgtaa
gi|14 : ttgTTTGG-C--------CATTTCCCCATTCAGCTGTCAATCT----AAT--------A--ATT--------ACTACA-------GTGTATGTTTA--TTTA---A-ATCCTTTGATTTGACTCGCTGTTCCCAGAAATTTCCAGCATAAAC---------T-----TGA----AATAATTGCCA---------AGACCGTATCTCAGTGAatgagg
gi|15 : GG-A--------CGTTACTCCATTCAGCTGCCAATCCTGTCTATC----------------------ATATAAGCT--A-CGTTTGTTTA--T--------ATTGATAGATTTTGCTCGCTGCTCTCAGAAATTTCCAACATAAAC---------T-----TGA----
gi|16 : tt-G--ACATGTG-AACTAAT-AAAACAAAAT-AT--T---TTGAGCGGT-G-CAATAAA--GTCGCC---ATTTC-----TTT-T-----TGATACTGCTTTTTTTT-----CA-AAAATGCTGAG-AATATT------TTTTACTTGATG-TA-CAAGATATAATAtttgattgcatagaatgtatcgc
gi|17 : gtTTGCATAACAAGTTAGAGA--AC--CTCTACTT-TAC------ATCATTTCAAACAATGTTGGTGATGAAGAGGAAGTGAACCTTGCGAACATGAC-------TAAACTCCAC-TC-AGTTTGCTTTTGCATA
gi|18 : tacgatCAAAAA-GG--C---CAGTTTAAT-A--AAAAGG--GCCGCCTTTGTTTTCTTTTTCT-T-----TAATACCGA--GTGCTT-----AA-GAAACGTCACA-AACGCTCGAAACTC------GATA-GG-CAAGGC
gi|19 : gaacactat-AAA-AGTCAAAACAAA-G-TG--T---CAAAA-AAT-G-CAAAAAA---TCGTC---AAAAT-----TGT-T-----TTATACCGA--TC-TCT-----AGTGAAATACCAAG-ATCGTTTGAGACTTTAATATTATA-TG-CAGGTCA
gi|2 : tCTGCTCACAGAAATTTCCAGCATAAAC---------T-----TGA----A---------ATAAGTGTAAAGATTGTATCTCAGCGATGACTT--T--------TAATTATTAG----ATTATTTA---AATTTCTTACCGAATAGCTGA-AATAATAT-GCTAGTAATGTAATCAGCACCACGGTCAATGAGACTTTAGAAAATGGCTGCTTAGCAGCGCTAACCTCGAC-TT------CAGTGGTATTGGGTTTTCGTCGACTATTAACCATGCCACGAGGAGGGATTTTGTGAC-CTATGCCTA--GCG------GA-G--ACACTTT-GAC-AATCAAAACAATAG-GG--T---CATAGTAGT-G-TAAAGAA--GCCGCC---GATTT-----TGT-T-----TGTTAACG---------------A-GAAACGTCATA-CATGTTCGAAAATCAAACTTGAAA-CG-CAAGGCGTA
gi|20 : taA-G--ATACTTG-AAC-TGTCAACACCA--------T---C---GTA------------------CC---AATCT-----TGT-T-----TGATGCCGA--TTATTT-----AA-GAAACATCGTA-AACGTTTGAAAt
gi|21 : attcatatgtgatgaggtggggactagaTCAAAACAAAAG-GG--T---CAACATAGT-G-TAAAATG--GCGGTT---GATTT-----TGT-T-----TGATACCTA--GCGTTT-----AA-GAAAAGT---G-AACAT-----------ATTTGACAATG-CAAGGAATAGT
gi|22 : -TTCGAA-G--ACACTTGTAAT--GACAAAACAAAAAAGG--T---CAAACTAGT-G-CTTCAAA--GT--------GTTT-----TTT-T-----TGgagatgt
gi|23 : tttatacccgttgtcgtttgtacttctgacgCTCTAACTTGTTG-TG-CAAGGCATA
gi|23 : taagtatttgatgagctagtaatcagTTGCACAACAAGTTAGAG---AA--CTCAACTT-TAC------ATCAATACAAACAATaactcaactttacatcaatacaaacaatt
gi|24 : taagtatttgatgagctagtaatcagtatgccTGCATGGCAAGTCAGAGA--AA--CTCTGTTT-TAT------GTCATTTCAAACAAt
gi|25 : gttgtttacattacgattactgcatctccTTGCATAACAAATTAGAGA--AA--CTC-TTGTATAC------ATTATTCCATACAATGGTCTTAATGAAG-GGAA-------TTGc
gi|3 : atgccTATCAACTGACTTGGATAGCTGTACACAGAAATTGT-AACATGAAC---------TCCCAATGATCTCA---------A---------AGATCATATATAAGTGAT---TT--TAGAT-AAATAATAATTAGCCTCATAA---ATGGGA-ATCAAACTAAATAGCAGATACCGGTATAATTT---ATAAAAT---CACCACTGTCAGTGGAACTTT-CAAAATGACTGTT
gi|3 : actacaattgtcatACTTTCA-TTATGCCATGAGGTCAGACT---T-----T---CTTATC------TCTGG-----CAT-----AT-AATCAAAACAAAAG-GT--T---CAAAATATT-G-CAAAAGC--TCTGCT---GATTT-----TCT-T-----TGATA---A---TGTTT-----AA-GAAATGGCATG----------------AATTTGATA-TT-CAAGGGATAGacctcgagaactttaactttcattatgccatgaggtcagactttcttatctctggcatataatcaaaacaaaaggttcaaaatattgcaaaagctctgctgattttctttgataatgtttaagaaatggcatgaatttgatattcaagggatag
gi|4 : actacaattgtcattatcaactgacttggatagctgtacacagaaattgtaacatgaactcccaatgatctcaaagatcatatataagtgattttagataaataataattagcctcataaatgggaatcaaactaaatagcagataccggtataatttataaaatcaccactgtcagtggaactttcaaaatgactgttacctcgagaactttaTGCATAACAAGTTAGAGC--AA--CTCAGTTT-TACATGTATGTCATTTTAAACAATGCTGATGAAGAAG-GAGA-------TTGTGTATGCAAC-------TTATCTCATCTCTGAGTTTGTTTTTACATATTGTTACACCTGATTGGCCGAATCAATT----GG-C--------CATTCCCTTATTTAGCTGTCAAACATGTCAATTGAAT--GATCATC--------GACATAA-TT--ACTATG-GTTTATGTTTATATATATCAATTGATTTGACTCACTGCTCCCAGAAATTT-CAACATAAACTAGAAATGAT-----TGA----A---------A---------AGATTGTATCTCAATGATAATTT--T
gi|5 : TGTACTCAGCACCGCGATCAATTAAATTTTCCAAAATTACTGTTTTGCAGCGTTAATATCCGCGTTGTTATACA-T-GTACCTGGTTTCCAT------TC-ATCATGTTGTAAAGTGGGGCT---TAA---TA-ACCTCTAGCGA----TGA-AATACATTTG-AAC-AGTCTAAA---------------------------CAAAAAT--GACGCC---GATTT-----GGT-T-----TGATATCGA--TTGTTA-----AA-GAAAGATCGTA-AATGTTTGAAATTCTAACTGGATA-TG-AAAAGCGTAATA
gi|6 : GCG--TTCGAA-G--ACACTTC-AAC-GGTCAAAACAAAAT-AG--TAAACAAA-TGGT-G-----AAA--ATCGCT----ATTT-----TTTGT-----TGACTCTGA--ACGTTT-----AA-GAAACGAC-TAGAACGATTGAAATTCTTACTTGATA-TG-AAAGGCCACGTATTT--TATAGTTTCGTG-----TTGATCAAACAAATGTATAATGTTTAATGTTTGTACAGACAA
gi|7 : gatttataccctatgttggtaatttgTAACATGATAGATATTAAGTTTT-GTTT----------GTCATTTTGTACAACGCTGATAATGAAG-GGAA-------TTATGTACGTGAT-------CTATCTCTCC-CCGAGCCTG---TTACATATTCTGACACGTGATTAACAAAGTCAGTTGTTAGA-CCGTTCCCACGTTCCCCTATTCAGCTGCCAAAC
gi|8 : C-ATTCAAAACAAAAG-GG--T---CAGATTGGT-G-CAAAAAAAAGC-ACT---GTTTT-----TCC-TA----TGATATCAA--CTGTTC-----AA-GAAACACAGCG-GCTATTAGAAATTCTATTGTGATA-CA-CAAGGCATAGTAa
gi|9 : acgataatgatatcagacatggttttatgggatgCTGT-G--ACATGTA-AAA-TATTAAAGCAAATG-GGATT---CCAA-CACT-G-CAAAAAG--GCCAAC---ATTTT-----TCT-C-----TGATATTTA--TTGTTTTGTTTAA-TAAATATTGTG-AATATTTGTAATTCTAACACGATA-TG-CAAGa
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|26 ): CTAACGCAGATCAATCGGCGAATGACTGAGTATGATGACACTCGGTAAGAAATAATCAA
Unaligned ( gi|27 ): GGTATAACTAAATAAATAATTCATTTCATTTGTCGAAAGTCC
Unaligned ( gi|28 ): TATTACAAAAGAAAAAGCAATATAAAACTTACAA
Alignments
lowQualScore : 11111111111111111111111
lowQualScore : 1111 2 111111 2222222 2222222 2222222 2222222222 00000000000000000000000 22222 22222222222 666666666666666666666666666666666666666666 4444444444 444444444444444444 1 555555 333333 1 1 4444444444444444444444444444 333333 33333333 11 11 1
lowQualScore : 0000 66 5 55 444444 6 1111111 1 9 6666666 1111111 3 0 0 00 1 2 1 5555555555 1 44 88888888888888888888888 11111 8 33 66666666666 1 1 6 666666666666666666666666666666666666666666 6 5555555555 333333333333333333 7 0 3 22 222222 66 1 0 8 0 1 3 6 888888 3 6 3 0 2 0 3 66 1 0000000000000000000000000000 3 44 33 2 0 33 444 6 1 2 33 8888888 5555 66666 1 2 88888 0 555 66666 2 00 2 44 4 3 2 2 777777 11111111 1 22 88 88 5
lowQualScore : .... .. . .. ...... . ....... . . ....... ....... . . . .. . . . .......... . .. ....................... ..... . .. ........... . . . .......................................... . .......... .................. . . . .. ...... .. . . . . . . . ...... . . . . . . . .. . ............................ . .. .. . . .. ... . . . .. ....... .... ..... . . ..... . ... ..... . .. . .. . . . . ...... ........ . .. .. .. .
lowQualScore : 7777 99 0 11 444444 7 7777777 4 6 0000000 2222222 8 2 2 55 0 5 0 0000000000 4 55 55555555555555555555555 00000 8 55 44444444444 4 0 7 555555555555555555555555555555555555555555 4 7777777777 333333333333333333 3 7 3 00 333333 88 2 2 8 8 0 7 7 333333 3 7 7 7 0 8 5 55 0 9999999999999999999999999999 3 11 22 5 3 44 444 5 8 5 33 6666666 6666 22222 9 5 88888 9 555 77777 7 77 7 00 7 7 7 7 333333 00000000 0 00 00 55 5
consensus : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTGCATAACAAGTTAGAGA--AA--CTC-GTTT-TAC------GTCATTTCAAACAATGCTGATGATGAAG-GGAA-------TTGTGTACGCGAC-------TTATCTCCTC-CCGAGTTTGTTTTTACATATTCTGACACGCGATTGGCCGANTCAGTTGTTAGG-C--------CGTTCCCCTATTCAGCTGCCAAACTTGTCAATCG--T--GA--ATCG--------ATATAA-CT--AGCGTGTGTTTA--TTTATATATATCGATTGATTTGGCTCGCTGCTCCCAGAAATTTCCAACATAAAC---------T-----TGA----A---------A---------AGATCGTATCTCAGCGATGACT---TTA--T-AAATAATAATTAG----ATAA---A---AATATCAAACCGAATAGCTGA-ANNAATAT-GC---TAATGTAATCGGCACCGCGGTCAATGAAACTTTCCAAAATGACTGTTTTGCAGCGCTAACNTCCGCGTT------CA-TGGTACCCGGTTTCCGTCGACTATCAACCATGCCGTGAGGTGGGACT---TAAC-TTA-ACCTATCGCG--TTCNGA-GACACTTG-AAC-AGTCAAAAC-AAAAGGG--T---CAAAGTAGT-G-CAAAAAA--GCCGCC---GATTT-----TNT-T-----TGATACCGA--TTGTTT-----AA-GAAACGTCGTA-AACGTTCGAAACTCTAACTTGATA-TG-CAAGGCATAGTACTT-GTAC-GTATCGTGAACATTTNACCAAANNAATGTATAATGTTTAACGTTTGTACAGACAA
Reference ( family-1978 ) : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTGCATAACAAGTTAGAGA--AA--CTC-GTTT-TAC------GTCATTTCAAACAATGCTGATGATGAAG-GGAA-------TTGTGTACGCGAC-------TTATCTCCTC-CCGAGTTTGTTTTTACATATTCTGACACGCGATTGGCCGANTCAGTTGTTAGG-C--------CGTTCCCCTATTCAGCTGCCAAACTTGTCAATCG--T--GA--ATCG--------ATATAA-CT--AGCGTGTGTTTA--TTTATATATATCGATTGATTTGGCTCGCTGCTCCCAGAAATTTCCAACATAAAC---------T-----TGA----A---------A---------AGATCGTATCTCAGCGATGACT---TTAG-T-AAATAATAATTAG----ATAA---A---AATATCAAACCGAATAGCTGA-ANNAATAT-GC---TAATGTAATCGGCACCGCGGTCAATGAAACTTTCCAAAATGACTGTTTTGCAGCGCTAACNTCCGCGTT------CA-TGGTACCCGGTTTCCGTCGACTATCAACCATGCCGTGAGGTGGGACT---TAAC-TTA-ACCTATCGCG--TTCTGA-GACACTTG-AAC-AGTCAAAAC-AAAAGGG--T---CAAAGTAGT-G-CAAAAAA--GCCGCC---GATTT-----TNT-T-----TGATACCGA--TTGTTT-----AA-GAAACGTCGTA-AACGTTCGAAACTCTAACTTGATA-TG-CAAGGCATAGTACTT-GTAC-GTATCGTGAACATTTNACCAAANNAATGTATAATGTTTAACGTTTGTACAGACAA
gi|1 : TTGCATAACAAGTTAGA----------C-GTTT-GAC------GTCATTTGAAACAATGCTGATGATGAAT-GGAA-------TTGTAAACG-GTC-------TTATCTCTTCACTGAGTTTGTTTTTACATATTTTGACATGCGATTGGCCTATTCAATTGTTAGG-C--------CGTTCACCTATTCGACTGCCAAACTTGTCAACCG--TCAAA--ATCACAGTAATAATATAA-CTTGAGCGTGTGTTTA--TATATATATATCGATTTATTTAGTTCGCTGTTCCCAGAAATTTGTAACTTGAAC---------T-----TGA----A---------A---------AGATCGTATCTCAGCGATGACTGAATAAC-TGAAATAATAAT-------ATAA---A---AATATCAAAATGAAAAGTTGC-ATAAATAT-------AATGTAATCGGCACCGCGGTCATTAAAATTTTCCGCAATGACTGGTGTGCAACGCGAACTTTTGCGTT------CA-TGATACCCGGTTTCTATTGGCTATCAACCATGTTATGAG-----ACT---GAACGTTA-ACATATTTGGATTTCTGA-GACATTTG-AAC-AGTCAAAAC-AAAATGG--T---CAAAGTAAT-G-CAAAAAA--GTCGCC---GATTT-----TGT-T-----TGATACCGA--TTGTTT-----AA-GAAGTCTCGTA-AAAGTTCGAAAGTCTAACTTGATA-TG-CAAGGCATACTACTTGGTGT-GTATC-TAAACATTTTACCAAAATAA--TATAATG--TAACATTTAT-CAAATAA
gi|10 : gtcctcgtcctatacgttctacctattcataATGCTGTTTGGTGGAACT----AAT-TTA-AC-TCTTGCG--TTC-GATGGCACTTT-AAC-AGCCGAACC-AAATGGG--T----AAAATAATTG-CAAAA---------------------------------------CGA--TTGGTT-----AA-GAAACGGTATA-ATGGTTTGATACTCTTACTTGATA-TG-TAAAGCA
gi|11 : tttggctattccttA--AA--CTCTGTTT-TAC------GGCGATTTAAATGATGCTAATACCAAAA-GGAA-------TTGTGTATGTGACATGCGATTTATCTCCT-----------TTTTTACATGTTCTGACACGCTGCTGTTTGATTCAGTTGTTAGATC--------TTTTCCCCTATTCAGCTGTCA
gi|12 : A-AACATTCA-AAC-AGTCAAAAC-AGAAGGT--T---CAAAGTTGT-G-CGAAATA---CCGCT---AATTA-----AAT-T-----TAATACCGA--TTGTTT-----AA-GAAACGTTGTA-AATATTCGAAATTCTAACATGATG-TGTTAAGCCA-AGT-CTT-G-AC-GTAT
gi|13 : ttGA-GACTCTTG-AAC-GGTCAAAAT-GAAAGGC--T---CAAAGTAGT-GTTAAAGAA--GTCGCC---GATTT-----TGT-CTTTTATAATATCAA--TTGTTT-----GA-AAAACATTGTA-A----CCAAAACTCTAACTTGAGA-TG-CAAAGCAGAGTAgtaa
gi|14 : ttgTTTGG-C--------CATTTCCCCATTCAGCTGTCAATCT----AAT--------A--AT-----------TACTA-C---AGTGTATGTTTA--TTTA---A-ATCCTTTGATTTGACTCGCTGTTCCCAGAAATTTCCAGCATAAAC---------T-----TGA----AATAATTGCCA---------AGACCGTATCTCAGTGAatgagg
gi|15 : GG-A--------CGTTACTCCATTCAGCTGCCAATCCTGTCTATC----------------------ATATAAGCT--A-CGTTTGTTTA--T--------ATTGATAGATTTTGCTCGCTGCTCTCAGAAATTTCCAACATAAAC---------T-----TGA----
gi|16 : tt-GACATGTG-AACTAAT-AAAAC-AAAATAT--T---TTGAGCGGT-G-CAATAAA--GTCGCC---ATTTC-----TTT-T-----TGATACTGCTTTTTTTT-----CA-AAAATGCTGAG-AATATT------TTTTACTTGATG-TA-CAAGATATAATAtttgattgcatagaatgtatcgc
gi|17 : gtTTGCATAACAAGTTAGAGA--AC--CTCTACTT-TAC------ATCATTTCAAACAATGTTGGTGATGAAGAGGAAGTGAACCTTGCGAACATGAC-------TAAACTCCAC-TC-AGTTTGCTTTTGCATA
gi|18 : tacgatC-AAAAAGG--C---CAGTTTAAT-A--AAAAGG--GCCGCCTTTGTTTTCTTTTTCT-T-----TAATACCGA--GTGCTT-----AA-GAAACGTCACA-AACGCTCGAAACTC------GATA-GG-CAAGGC
gi|19 : gaacactat-AAA-AGTCAAAAC-AAA-GTG--T---CAAAA-AAT-G-CAAAAAA---TCGTC---AAAAT-----TGT-T-----TTATACCGA--TC-TCT-----AGTGAAATACCAAG-ATCGTTTGAGACTTTAATATTATA-TG-CAGGTCA
gi|2 : tCTGCTCACAGAAATTTCCAGCATAAAC---------T-----TGA----A---------ATAAGTGTAAAGATTGTATCTCAGCGATGACT---TT--------TAATTATTAG----ATTATTTA---AATTTCTTACCGAATAGCTGA-AATAATAT-GCTAGTAATGTAATCAGCACCACGGTCAATGAGACTTTAGAAAATGGCTGCTTAGCAGCGCTAACCTCGAC-TT------CAGTGGTATTGGGTTTTCGTCGACTATTAACCATGCCACGAGGAGGGATTTTGTGAC-CTATGCCTA--GCG------GA-GACACTTT-GAC-AATCAAAAC-AATAGGG--T---CATAGTAGT-G-TAAAGAA--GCCGCC---GATTT-----TGT-T-----TGTTAACG---------------A-GAAACGTCATA-CATGTTCGAAAATCAAACTTGAAA-CG-CAAGGCGTA
gi|20 : taA-GATACTTG-AAC-TGTCAACAC-CA-------T---C---GTA------------------CC---AATCT-----TGT-T-----TGATGCCGA--TTATTT-----AA-GAAACATCGTA-AACGTTTGAAAt
gi|21 : attcatatgtgatgaggtggggactagaTCAAAAC-AAAAGGG--T---CAACATAGT-G-TAAAATG--GCGGTT---GATTT-----TGT-T-----TGATACCTA--GCGTTT-----AA-GAAAAGT---G-AACAT-----------ATTTGACAATG-CAAGGAATAGT
gi|22 : CG--TTCGAA-GACACTTGTAAT--GACAAAACAAAAAAGG--T---CAAACTAGT-G-CTTCAAA--GT--------GTTT-----TTT-T-----TGgagatgt
gi|23 : tttatacccgttgtcgtttgtacttctgaCTCTAACTTGTTG-TG-CAAGGCATA
gi|23 : taagtatttgatgagctagtaatcagTTGCACAACAAGTTAGAG---AA--CTCAACTT-TAC------ATCAATACAAACAATaactcaactttacatcaatacaaacaatt
gi|24 : taagtatttgatgagctagtaatcagtatgccTGCATGGCAAGTCAGAGA--AA--CTCTGTTT-TAT------GTCATTTCAAACAAt
gi|25 : gttgtttacattacgattactgcatctccTTGCATAACAAATTAGAGA--AA--CTC-TTGTATAC------ATTATTCCATACAATGGTCTTAATGAAG-GGAA-------TTGc
gi|3 : atgccTATCAACTGACTTGGATAGCTGTACACAGAAA-TTGTAACATGAAC---------TCCCAATGATCTCA---------A---------AGATCATATATAAG---TGATT---TTAGAT-AAATAATAATTAGCCTCATAA---ATGGGA-ATCAAACTAAATAGCAGATACCGGTATAAT---TTATAAAAT---CACCACTGTCAGTGGAACTTT-CAAAATGACTGTT
gi|3 : actacaattgtcatACTTTCA-TTATGCCATGAGGTCAGACT---T-----T---CTTATC------TCTGG---CAT-----AT-AATCAAAAC-AAAAGGT--T---CAAAATATT-G-CAAAAGC--TCTGCT---GATTT-----TCT-T-----TGATA---A---TGTTT-----AA-GAAATGGCATG----------------AATTTGATA-TT-CAAGGGATAGacctcgagaactttaactttcattatgccatgaggtcagactttcttatctctggcatataatcaaaacaaaaggttcaaaatattgcaaaagctctgctgattttctttgataatgtttaagaaatggcatgaatttgatattcaagggatag
gi|4 : actacaattgtcattatcaactgacttggatagctgtacacagaaattgtaacatgaactcccaatgatctcaaagatcatatataagtgattttagataaataataattagcctcataaatgggaatcaaactaaatagcagataccggtataatttataaaatcaccactgtcagtggaactttcaaaatgactgttacctcgagaactttaTGCATAACAAGTTAGAGC--AA--CTCAGTTT-TACATGTATGTCATTTTAAACAATGCTGATGAAGAAG-GAGA-------TTGTGTATGCAAC-------TTATCTCATCTCTGAGTTTGTTTTTACATATTGTTACACCTGATTGGCCGAATCAATT----GG-C--------CATTCCCTTATTTAGCTGTCAAACATGTCAATTGAAT--GATCATCG--------ACATAA-TT--ACTATG-GTTTATGTTTATATATATCAATTGATTTGACTCACTGCTCCCAGAAATTT-CAACATAAACTAGAAATGAT-----TGA----A---------A---------AGATTGTATCTCAATGATAATT---TT
gi|5 : TGTACTCAGCACCGCGATCAATTAAATTTTCCAAAATTACTGTTTTGCAGCGTTAATATCCGCGTTGTTATACA-T-GTACCTGGTTTCCAT------TC-ATCATGTTGTAAAGTGGGGCT---TAA---TA-ACCTCTAGCG--ATGAAA-TACATTTG-AAC-AGTCTAAA---------------------------CAAAAAT--GACGCC---GATTT-----GGT-T-----TGATATCGA--TTGTTA-----AA-GAAAGATCGTA-AATGTTTGAAATTCTAACTGGATA-TG-AAAAGCGTAATA
gi|6 : GCG--TTCGAA-GACACTTC-AAC-GGTCAAAAC-AAAATAG--TAAACAAA-TGGT-G-----AAA--ATCGCT----ATTT-----TTTGT-----TGACTCTGA--ACGTTT-----AA-GAAACGAC-TAGAACGATTGAAATTCTTACTTGATA-TG-AAAGGCCACGTATTT--TATAGTTTCGTG-----TTGATCAAACAAATGTATAATGTTTAATGTTTGTACAGACAA
gi|7 : gatttataccctatgttggtaatttgTAACATGATAGATATTAAGTTTT-GTTT----------GTCATTTTGTACAACGCTGATAATGAAG-GGAA-------TTATGTACGTGAT-------CTATCTCTCC-CCGAGCCTG---TTACATATTCTGACACGTGATTAACAAAGTCAGTTGTTAGA-CCGTTCCCACGTTCCCCTATTCAGCTGCCAAAC
gi|8 : C-ATTCAAAAC-AAAAGGG--T---CAGATTGGT-G-CAAAAAAAAGC-ACT---GTTTT-----TCC-TA----TGATATCAA--CTGTTC-----AA-GAAACACAGCG-GCTATTAGAAATTCTATTGTGATA-CA-CAAGGCATAGTAa
gi|9 : acgataatgatatcagacatggttttatgggatgCTGT-GACATGTA-AAA-TATTAAAGC-AAATGGGATT---CCAA-CACT-G-CAAAAAG--GCCAAC---ATTTT-----TCT-C-----TGATATTTA--TTGTTTTGTTTAA-TAAATATTGTG-AATATTTGTAATTCTAACACGATA-TG-CAAGa
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|26 ): CTAACGCAGATCAATCGGCGAATGACTGAGTATGATGACACTCGGTAAGAAATAATCAA
Unaligned ( gi|27 ): GGTATAACTAAATAAATAATTCATTTCATTTGTCGAAAGTCC
Unaligned ( gi|28 ): TATTACAAAAGAAAAAGCAATATAAAACTTACAA
Alignments
lowQualScore : 11111111111111111111111
lowQualScore : 1111 2 111111 2222222 2222222 2222222 2222222222 00000000000000000000000 22222 22222222222 666666666666666666666666666666666666666666 3333333333 333333333333333 1 55555555 333333 1 1 444444 11111111 333333 33333333 11 11 1
lowQualScore : 0000 66 5 55 444444 6 1111111 1 9 6666666 1111111 3 0 0 00 1 2 1 5555555555 1 44 88888888888888888888888 11111 8 33 66666666666 1 1 6 666666666666666666666666666666666666666666 6 4444444444 888888888888888 7 0 3 22 11111111 66 1 0 8 0 1 3 6 888888 3 6 3 0 2 0 3 66 1 111111 3 8 0 99999999 1 44 33 2 0 33 444 6 1 2 33 8888888 5555 66666 1 2 88888 0 555 66666 2 00 2 44 4 3 2 2 777777 11111111 1 22 88 88 5
lowQualScore : .... .. . .. ...... . ....... . . ....... ....... . . . .. . . . .......... . .. ....................... ..... . .. ........... . . . .......................................... . .......... ............... . . . .. ........ .. . . . . . . . ...... . . . . . . . .. . ...... . . . ........ . .. .. . . .. ... . . . .. ....... .... ..... . . ..... . ... ..... . .. . .. . . . . ...... ........ . .. .. .. .
lowQualScore : 7777 99 0 11 444444 7 7777777 4 6 0000000 2222222 8 2 2 55 0 5 0 0000000000 4 55 55555555555555555555555 00000 8 55 44444444444 4 0 7 555555555555555555555555555555555555555555 4 4444444444 777777777777777 3 7 3 00 00000000 88 2 2 8 8 0 7 7 333333 3 7 7 7 0 8 5 55 0 666666 8 2 6 22222222 0 11 22 5 3 44 444 5 8 5 33 6666666 6666 22222 9 5 88888 9 555 77777 7 77 7 00 7 7 7 7 333333 00000000 0 00 00 55 5
consensus : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTGCATAACAAGTTAGAGA--AA--CTC-GTTT-TAC------GTCATTTCAAACAATGCTGATGATGAAG-GGAA-------TTGTGTACGCGAC-------TTATCTCCTC-CCGAGTTTGTTTTTACATATTCTGACACGCGATTGGCCGANTCAGTTGTTAGG-C--------CGTTCCCCTATTCAGCTGCCAAACTTGTCAATCG--T--GA--ATCG--------ATATAA-CT--AGCGTGTGTTTA--TTTATATATATCGATTGATTTGGCTCGCTGCTCCCAGAAATTTCCAACATAAAC---------T-----TGA----A---------A---------AGATCGTATCTCAGCGATGACTTT--ATAA-T--AATAATTAG----ATAA---A---AATATCAAACCGAATAGCTGA-ANNAATAT-GCTA---ATGTAATCGGCACCGCGGTCAATGAAACTTTCCAAAATGACTGTTTTGCAGCGCTAACNTCCGCGTT------CA-TGGTACCCGGTTTCCGTCGACTATCAACCATGCCGTGAGGTGGGACTTAAT-TTAACCTATCGCG--T-TCGGAGACACTTG-AAC-AGTCAAAAC-AAAAGGG--T---CAAAGTAGT-G-CAAAAAA--GCCGCC---GATTT-----TNT-T-----TGATACCGA--TTGTTT-----AA-GAAACGTCGTA-AACGTTCGAAACTCTAACTTGATA-TG-CAAGGCATAGTACTT-GTAC-GTATCGTGAACATTTNACCAAANNAATGTATAATGTTTAACGTTTGTACAGACAA
Reference ( family-1978 ) : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTGCATAACAAGTTAGAGA--AA--CTC-GTTT-TAC------GTCATTTCAAACAATGCTGATGATGAAG-GGAA-------TTGTGTACGCGAC-------TTATCTCCTC-CCGAGTTTGTTTTTACATATTCTGACACGCGATTGGCCGANTCAGTTGTTAGG-C--------CGTTCCCCTATTCAGCTGCCAAACTTGTCAATCG--T--GA--ATCG--------ATATAA-CT--AGCGTGTGTTTA--TTTATATATATCGATTGATTTGGCTCGCTGCTCCCAGAAATTTCCAACATAAAC---------T-----TGA----A---------A---------AGATCGTATCTCAGCGATGACTTT--ATAAAT--AATAATTAG----ATAA---A---AATATCAAACCGAATAGCTGA-ANNAATAT-GCTA---ATGTAATCGGCACCGCGGTCAATGAAACTTTCCAAAATGACTGTTTTGCAGCGCTAACNTCCGCGTT------CA-TGGTACCCGGTTTCCGTCGACTATCAACCATGCCGTGAGGTGGGACTTAAC-TTAACCTATCGCG--T-TCNGAGACACTTG-AAC-AGTCAAAAC-AAAAGGG--T---CAAAGTAGT-G-CAAAAAA--GCCGCC---GATTT-----TNT-T-----TGATACCGA--TTGTTT-----AA-GAAACGTCGTA-AACGTTCGAAACTCTAACTTGATA-TG-CAAGGCATAGTACTT-GTAC-GTATCGTGAACATTTNACCAAANNAATGTATAATGTTTAACGTTTGTACAGACAA
gi|1 : TTGCATAACAAGTTAGA----------C-GTTT-GAC------GTCATTTGAAACAATGCTGATGATGAAT-GGAA-------TTGTAAACG-GTC-------TTATCTCTTCACTGAGTTTGTTTTTACATATTTTGACATGCGATTGGCCTATTCAATTGTTAGG-C--------CGTTCACCTATTCGACTGCCAAACTTGTCAACCG--TCAAA--ATCACAGTAATAATATAA-CTTGAGCGTGTGTTTA--TATATATATATCGATTTATTTAGTTCGCTGTTCCCAGAAATTTGTAACTTGAAC---------T-----TGA----A---------A---------AGATCGTATCTCAGCGATGACTGA--ATAACTGAAATAATAAT----ATAA---A---AATATCAAAATGAAAAGTTGC-ATAAATAT----A---ATGTAATCGGCACCGCGGTCATTAAAATTTTCCGCAATGACTGGTGTGCAACGCGAACTTTTGCGTT------CA-TGATACCCGGTTTCTATTGGCTATCAACCATGTTATGAG-----ACTGAACGTTAACATATTTGGATT-TCTGAGACATTTG-AAC-AGTCAAAAC-AAAATGG--T---CAAAGTAAT-G-CAAAAAA--GTCGCC---GATTT-----TGT-T-----TGATACCGA--TTGTTT-----AA-GAAGTCTCGTA-AAAGTTCGAAAGTCTAACTTGATA-TG-CAAGGCATACTACTTGGTGT-GTATC-TAAACATTTTACCAAAATAA--TATAATG--TAACATTTAT-CAAATAA
gi|10 : gtcctcgtcctatacgttctacctattcataATGCTGTTTGGTGGAACT-AAT-TTAAC-TCTTGCG--T-TCGATGGCACTTT-AAC-AGCCGAACC-AAATGGG--T----AAAATAATTG-CAAAA---------------------------------------CGA--TTGGTT-----AA-GAAACGGTATA-ATGGTTTGATACTCTTACTTGATA-TG-TAAAGCA
gi|11 : tttggctattccttA--AA--CTCTGTTT-TAC------GGCGATTTAAATGATGCTAATACCAAAA-GGAA-------TTGTGTATGTGACATGCGATTTATCTCCT-----------TTTTTACATGTTCTGACACGCTGCTGTTTGATTCAGTTGTTAGATC--------TTTTCCCCTATTCAGCTGTCA
gi|12 : AAACATTCA-AAC-AGTCAAAAC-AGAAGGT--T---CAAAGTTGT-G-CGAAATA---CCGCT---AATTA-----AAT-T-----TAATACCGA--TTGTTT-----AA-GAAACGTTGTA-AATATTCGAAATTCTAACATGATG-TGTTAAGCCA-AGT-CTT-G-AC-GTAT
gi|13 : tt-TTGGAGACTCTTG-AAC-GGTCAAAAT-GAAAGGC--T---CAAAGTAGT-GTTAAAGAA--GTCGCC---GATTT-----TGT-CTTTTATAATATCAA--TTGTTT-----GA-AAAACATTGTA-A----CCAAAACTCTAACTTGAGA-TG-CAAAGCAGAGTAgtaa
gi|14 : TTTGG-C--------CATTTCCCCATTCAGCTGTCAATCT----AAT--------A--AT-----------TACTA-C---AGTGTATGTTTA--TTTA---A-ATCCTTTGATTTGACTCGCTGTTCCCAGAAATTTCCAGCATAAAC---------T-----TGA----AATAATTGCCA---------AGACCGTATCTCAGTGAatgagg
gi|15 : GG-A--------CGTTACTCCATTCAGCTGCCAATCCTGTCTATC----------------------ATATAAGCT--A-CGTTTGTTTA--T--------ATTGATAGATTTTGCTCGCTGCTCTCAGAAATTTCCAACATAAAC---------T-----TGA----
gi|16 : ttGACATGTG-AACTAAT-AAAAC-AAAATAT--T---TTGAGCGGT-G-CAATAAA--GTCGCC---ATTTC-----TTT-T-----TGATACTGCTTTTTTTT-----CA-AAAATGCTGAG-AATATT------TTTTACTTGATG-TA-CAAGATATAATAtttgattgcatagaatgtatcgc
gi|17 : gtTTGCATAACAAGTTAGAGA--AC--CTCTACTT-TAC------ATCATTTCAAACAATGTTGGTGATGAAGAGGAAGTGAACCTTGCGAACATGAC-------TAAACTCCAC-TC-AGTTTGCTTTTGCATA
gi|18 : tacgatC-AAAAAGG--C---CAGTTTAAT-A--AAAAGG--GCCGCCTTTGTTTTCTTTTTCT-T-----TAATACCGA--GTGCTT-----AA-GAAACGTCACA-AACGCTCGAAACTC------GATA-GG-CAAGGC
gi|19 : gaacactat-AAA-AGTCAAAAC-AAA-GTG--T---CAAAA-AAT-G-CAAAAAA---TCGTC---AAAAT-----TGT-T-----TTATACCGA--TC-TCT-----AGTGAAATACCAAG-ATCGTTTGAGACTTTAATATTATA-TG-CAGGTCA
gi|2 : tCTGCTCACAGAAATTTCCAGCATAAAC---------T-----TGA----A---------ATAAGTGTAAAGATTGTATCTCAGCGATGACTTT-------T--AATTATTAG----ATTATTTA---AATTTCTTACCGAATAGCTGA-AATAATAT-GCTAGTAATGTAATCAGCACCACGGTCAATGAGACTTTAGAAAATGGCTGCTTAGCAGCGCTAACCTCGAC-TT------CAGTGGTATTGGGTTTTCGTCGACTATTAACCATGCCACGAGGAGGGATTT--T-GTGACCTAT-GCC--TAGCGGAGACACTTT-GAC-AATCAAAAC-AATAGGG--T---CATAGTAGT-G-TAAAGAA--GCCGCC---GATTT-----TGT-T-----TGTTAACG---------------A-GAAACGTCATA-CATGTTCGAAAATCAAACTTGAAA-CG-CAAGGCGTA
gi|20 : taAGATACTTG-AAC-TGTCAACAC-CA-------T---C---GTA------------------CC---AATCT-----TGT-T-----TGATGCCGA--TTATTT-----AA-GAAACATCGTA-AACGTTTGAAAt
gi|21 : attcatatgtgatgaggtggggactagaTCAAAAC-AAAAGGG--T---CAACATAGT-G-TAAAATG--GCGGTT---GATTT-----TGT-T-----TGATACCTA--GCGTTT-----AA-GAAAAGT---G-AACAT-----------ATTTGACAATG-CAAGGAATAGT
gi|22 : CG--T-TCGAAGACACTTGTAAT--GACAAAACAAAAAAGG--T---CAAACTAGT-G-CTTCAAA--GT--------GTTT-----TTT-T-----TGgagatgt
gi|23 : tttatacccgttgtcgtttgtacttctgaCTCTAACTTGTTG-TG-CAAGGCATA
gi|23 : taagtatttgatgagctagtaatcagTTGCACAACAAGTTAGAG---AA--CTCAACTT-TAC------ATCAATACAAACAATaactcaactttacatcaatacaaacaatt
gi|24 : taagtatttgatgagctagtaatcagtatgccTGCATGGCAAGTCAGAGA--AA--CTCTGTTT-TAT------GTCATTTCAAACAAt
gi|25 : gttgtttacattacgattactgcatctccTTGCATAACAAATTAGAGA--AA--CTC-TTGTATAC------ATTATTCCATACAATGGTCTTAATGAAG-GGAA-------TTGc
gi|3 : atgccTATCAACTGACTTGGATAGCTGTACACAGAAA-TTGTAACATGAAC---------TCCCAATGATCTCA---------A---------AGATCATATATAAG---TGATTTTAGATAAAT--AATAATTAGCCTCATAA---ATGGGA-ATCAAACTAAATAGCAGATACCGGTATAATTT---ATAAAAT---CACCACTGTCAGTGGAACTTT-CAAAATGACTGTT
gi|3 : actacaattgtcatACTTTCA-TTATGCCATGAGGTCAGACTT-----T--CTTATC-------TCTGG--CAT-----AT-AATCAAAAC-AAAAGGT--T---CAAAATATT-G-CAAAAGC--TCTGCT---GATTT-----TCT-T-----TGATA---A---TGTTT-----AA-GAAATGGCATG----------------AATTTGATA-TT-CAAGGGATAGacctcgagaactttaactttcattatgccatgaggtcagactttcttatctctggcatataatcaaaacaaaaggttcaaaatattgcaaaagctctgctgattttctttgataatgtttaagaaatggcatgaatttgatattcaagggatag
gi|4 : actacaattgtcattatcaactgacttggatagctgtacacagaaattgtaacatgaactcccaatgatctcaaagatcatatataagtgattttagataaataataattagcctcataaatgggaatcaaactaaatagcagataccggtataatttataaaatcaccactgtcagtggaactttcaaaatgactgttacctcgagaactttaTGCATAACAAGTTAGAGC--AA--CTCAGTTT-TACATGTATGTCATTTTAAACAATGCTGATGAAGAAG-GAGA-------TTGTGTATGCAAC-------TTATCTCATCTCTGAGTTTGTTTTTACATATTGTTACACCTGATTGGCCGAATCAATT----GG-C--------CATTCCCTTATTTAGCTGTCAAACATGTCAATTGAAT--GATCATCG--------ACATAA-TT--ACTATG-GTTTATGTTTATATATATCAATTGATTTGACTCACTGCTCCCAGAAATTT-CAACATAAACTAGAAATGAT-----TGA----A---------A---------AGATTGTATCTCAATGATAATTTT--
gi|5 : TGTACTCAGCACCGCGATCAATTAAATTTTCCAAAATTACTGTTTTGCAGCGTTAATATCCGCGTTGTTATACA-T-GTACCTGGTTTCCAT------TC-ATCATGTTGTAAAGTGGGGCTTAA---TAACCTCTAGCG--A-TGAAATACATTTG-AAC-AGTCTAAA---------------------------CAAAAAT--GACGCC---GATTT-----GGT-T-----TGATATCGA--TTGTTA-----AA-GAAAGATCGTA-AATGTTTGAAATTCTAACTGGATA-TG-AAAAGCGTAATA
gi|6 : GCG--T-TCGAAGACACTTC-AAC-GGTCAAAAC-AAAATAG--TAAACAAA-TGGT-G-----AAA--ATCGCT----ATTT-----TTTGT-----TGACTCTGA--ACGTTT-----AA-GAAACGAC-TAGAACGATTGAAATTCTTACTTGATA-TG-AAAGGCCACGTATTT--TATAGTTTCGTG-----TTGATCAAACAAATGTATAATGTTTAATGTTTGTACAGACAA
gi|7 : gatttataccctatgttggtaatttgTAACATGATAGATATTAAGTTTT-GTTT----------GTCATTTTGTACAACGCTGATAATGAAG-GGAA-------TTATGTACGTGAT-------CTATCTCTCC-CCGAGCCTG---TTACATATTCTGACACGTGATTAACAAAGTCAGTTGTTAGA-CCGTTCCCACGTTCCCCTATTCAGCTGCCAAAC
gi|8 : C-ATTCAAAAC-AAAAGGG--T---CAGATTGGT-G-CAAAAAAAAGC-ACT---GTTTT-----TCC-TA----TGATATCAA--CTGTTC-----AA-GAAACACAGCG-GCTATTAGAAATTCTATTGTGATA-CA-CAAGGCATAGTAa
gi|9 : acgataatgatatcagacatggttttatgggatgCTGTGACATGTA-AAA-TATTAAAGC-AAATGGGATT---CCAA-CACT-G-CAAAAAG--GCCAAC---ATTTT-----TCT-C-----TGATATTTA--TTGTTTTGTTTAA-TAAATATTGTG-AATATTTGTAATTCTAACACGATA-TG-CAAGa
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|26 ): CTAACGCAGATCAATCGGCGAATGACTGAGTATGATGACACTCGGTAAGAAATAATCAA
Unaligned ( gi|27 ): GGTATAACTAAATAAATAATTCATTTCATTTGTCGAAAGTCC
Unaligned ( gi|28 ): TATTACAAAAGAAAAAGCAATATAAAACTTACAA
Alignments
lowQualScore : 11111111111111111111111
lowQualScore : 1111 2 111111 2222222 2222222 2222222 2222222222 00000000000000000000000 22222 22222222222 666666666666666666666666666666666666666666 55555555555 333333333333333 1 444444444 333333 1 1 333333 222 333333 33333333 11 11 1
lowQualScore : 0000 66 5 55 444444 6 1111111 1 9 6666666 1111111 3 0 0 00 1 2 1 5555555555 1 44 88888888888888888888888 11111 8 33 66666666666 1 1 6 666666666666666666666666666666666666666666 6 00000000000 888888888888888 7 0 3 22 222222222 66 1 0 8 0 1 3 6 888888 3 6 3 0 2 0 3 66 3 1 888888 3 8 0 000 0 5 33 3 2 0 33 444 6 44 33 8888888 5555 66666 1 2 88888 0 555 66666 2 00 2 44 4 3 2 2 777777 11111111 1 22 88 88 5
lowQualScore : .... .. . .. ...... . ....... . . ....... ....... . . . .. . . . .......... . .. ....................... ..... . .. ........... . . . .......................................... . ........... ............... . . . .. ......... .. . . . . . . . ...... . . . . . . . .. . . ...... . . . ... . . .. . . . .. ... . .. .. ....... .... ..... . . ..... . ... ..... . .. . .. . . . . ...... ........ . .. .. .. .
lowQualScore : 7777 99 0 11 444444 7 7777777 4 6 0000000 2222222 8 2 2 55 0 5 0 0000000000 4 55 55555555555555555555555 00000 8 55 44444444444 4 0 7 555555555555555555555555555555555555555555 4 77777777777 777777777777777 3 7 3 00 000000000 88 2 2 8 8 0 7 7 333333 3 7 7 7 0 8 5 55 2 0 888888 8 2 6 666 7 0 99 1 5 3 44 444 5 33 33 6666666 6666 22222 9 5 88888 9 555 77777 7 77 7 00 7 7 7 7 333333 00000000 0 00 00 55 5
consensus : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTGCATAACAAGTTAGAGA--AA--CTC-GTTT-TAC------GTCATTTCAAACAATGCTGATGATGAAG-GGAA-------TTGTGTACGCGAC-------TTATCTCCTC-CCGAGTTTGTTTTTACATATTCTGACACGCGATTGGCCGANTCAGTTGTTAGG-C--------CGTTCCCCTATTCAGCTGCCAAACTTGTCAATCG--T--GA--ATCG--------ATATAA-CT--AGCGTGTGTTTA--TTTATATATATCGATTGATTTGGCTCGCTGCTCCCAGAAATTTCCAACATAAAC---------T-----TGA----A---------A---------AGATCGTATCTCAGCGATGACTTT--AT-AAT---AATAATTAG----ATAA---A---AATATCAAACCGAATAGCTGA-ANNAATAT-GCTA---ATGTAATCGGCACCGCGGTCAATGAAACTTTCCAAAATGACTGTTTTGCAGCGCTAACNTCCGCGTT------CA-TGGTACCCGGTTTCCGTCGACTATCAACCATGCCGTGAGGTGGGACTTAAT-TTAACCTATC--GCGT-TCGGAGACACTTG-AAC-AGTCAAAAC-AAAAGGG--T---CAAAGTAG-TG-CAAAAAA--GCCGCC---GATTT-----TNT-T-----TGATACCGA--TTGTTT-----AA-GAAACGTCGTA-AACGTTCGAAACTCTAACTTGATA-TG-CAAGGCATAGTACTT-GTAC-GTATCGTGAACATTTNACCAAANNAATGTATAATGTTTAACGTTTGTACAGACAA
Reference ( family-1978 ) : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTGCATAACAAGTTAGAGA--AA--CTC-GTTT-TAC------GTCATTTCAAACAATGCTGATGATGAAG-GGAA-------TTGTGTACGCGAC-------TTATCTCCTC-CCGAGTTTGTTTTTACATATTCTGACACGCGATTGGCCGANTCAGTTGTTAGG-C--------CGTTCCCCTATTCAGCTGCCAAACTTGTCAATCG--T--GA--ATCG--------ATATAA-CT--AGCGTGTGTTTA--TTTATATATATCGATTGATTTGGCTCGCTGCTCCCAGAAATTTCCAACATAAAC---------T-----TGA----A---------A---------AGATCGTATCTCAGCGATGACTTT--AT-AAT---AATAATTAG----ATAA---A---AATATCAAACCGAATAGCTGA-ANNAATAT-GCTA---ATGTAATCGGCACCGCGGTCAATGAAACTTTCCAAAATGACTGTTTTGCAGCGCTAACNTCCGCGTT------CA-TGGTACCCGGTTTCCGTCGACTATCAACCATGCCGTGAGGTGGGACTTAAT-TTAACCTATC--GCGT-TCGGAGACACTTG-AAC-AGTCAAAAC-AAAAGGG--T---CAAAGTAG-TG-CAAAAAA--GCCGCC---GATTT-----TNT-T-----TGATACCGA--TTGTTT-----AA-GAAACGTCGTA-AACGTTCGAAACTCTAACTTGATA-TG-CAAGGCATAGTACTT-GTAC-GTATCGTGAACATTTNACCAAANNAATGTATAATGTTTAACGTTTGTACAGACAA
gi|1 : TTGCATAACAAGTTAGA----------C-GTTT-GAC------GTCATTTGAAACAATGCTGATGATGAAT-GGAA-------TTGTAAACG-GTC-------TTATCTCTTCACTGAGTTTGTTTTTACATATTTTGACATGCGATTGGCCTATTCAATTGTTAGG-C--------CGTTCACCTATTCGACTGCCAAACTTGTCAACCG--TCAAA--ATCACAGTAATAATATAA-CTTGAGCGTGTGTTTA--TATATATATATCGATTTATTTAGTTCGCTGTTCCCAGAAATTTGTAACTTGAAC---------T-----TGA----A---------A---------AGATCGTATCTCAGCGATGACTGA--AT-AACTGAAATAATAAT----ATAA---A---AATATCAAAATGAAAAGTTGC-ATAAATA----TA---ATGTAATCGGCACCGCGGTCATTAAAATTTTCCGCAATGACTGGTGTGCAACGCGAACTTTTGCGTT------CA-TGATACCCGGTTTCTATTGGCTATCAACCATGTTATGA-----GACTGAACGTTAACATATTTGGATT-TCTGAGACATTTG-AAC-AGTCAAAAC-AAAATGG--T---CAAAGTAA-TG-CAAAAAA--GTCGCC---GATTT-----TGT-T-----TGATACCGA--TTGTTT-----AA-GAAGTCTCGTA-AAAGTTCGAAAGTCTAACTTGATA-TG-CAAGGCATACTACTTGGTGT-GTATC-TAAACATTTTACCAAAATAA--TATAATG--TAACATTTAT-CAAATAA
gi|10 : gtcctcgtcctatacgttctacctattcataATGCTGTTTGGTGGAACT-AAT-TTAAC-TCTT--GCGT-TCGATGGCACTTT-AAC-AGCCGAACC-AAATGGG--T----AAAATAATTG-CAAAA---------------------------------------CGA--TTGGTT-----AA-GAAACGGTATA-ATGGTTTGATACTCTTACTTGATA-TG-TAAAGCA
gi|11 : tttggctattccttA--AA--CTCTGTTT-TAC------GGCGATTTAAATGATGCTAATACCAAAA-GGAA-------TTGTGTATGTGACATGCGATTTATCTCCT-----------TTTTTACATGTTCTGACACGCTGCTGTTTGATTCAGTTGTTAGATC--------TTTTCCCCTATTCAGCTGTCA
gi|12 : AAACATTCA-AAC-AGTCAAAAC-AGAAGGT--T---CAAAGTTG-TG-CGAAATA---CCGCT---AATTA-----AAT-T-----TAATACCGA--TTGTTT-----AA-GAAACGTTGTA-AATATTCGAAATTCTAACATGATG-TGTTAAGCCA-AGT-CTT-G-AC-GTAT
gi|13 : tt-TTGGAGACTCTTG-AAC-GGTCAAAAT-GAAAGGC--T---CAAAGTAG-TGTTAAAGAA--GTCGCC---GATTT-----TGT-CTTTTATAATATCAA--TTGTTT-----GA-AAAACATTGTA-A----CCAAAACTCTAACTTGAGA-TG-CAAAGCAGAGTAgtaa
gi|14 : TTTGG-C--------CATTTCCCCATTCAGCTGTCAATCT----AAT--------A--AT-----------TACTA-C---AGTGTATGTTTA--TTTA---A-ATCCTTTGATTTGACTCGCTGTTCCCAGAAATTTCCAGCATAAAC---------T-----TGA----AATAATTGCCA---------AGACCGTATCTCAGTGAatgagg
gi|15 : GG-A--------CGTTACTCCATTCAGCTGCCAATCCTGTCTATC----------------------ATATAAGCT--A-CGTTTGTTTA--T--------ATTGATAGATTTTGCTCGCTGCTCTCAGAAATTTCCAACATAAAC---------T-----TGA----
gi|16 : ttGACATGTG-AACTAAT-AAAAC-AAAATAT--T---TTGAGCGG-TG-CAATAAA--GTCGCC---ATTTC-----TTT-T-----TGATACTGCTTTTTTTT-----CA-AAAATGCTGAG-AATATT------TTTTACTTGATG-TA-CAAGATATAATAtttgattgcatagaatgtatcgc
gi|17 : gtTTGCATAACAAGTTAGAGA--AC--CTCTACTT-TAC------ATCATTTCAAACAATGTTGGTGATGAAGAGGAAGTGAACCTTGCGAACATGAC-------TAAACTCCAC-TC-AGTTTGCTTTTGCATA
gi|18 : tacgatC-AAAAAGG--C---CAGTTTAA-TA--AAAAGG--GCCGCCTTTGTTTTCTTTTTCT-T-----TAATACCGA--GTGCTT-----AA-GAAACGTCACA-AACGCTCGAAACTC------GATA-GG-CAAGGC
gi|19 : gaacactat-AAA-AGTCAAAAC-AAA-GTG--T---CAAAA-AA-TG-CAAAAAA---TCGTC---AAAAT-----TGT-T-----TTATACCGA--TC-TCT-----AGTGAAATACCAAG-ATCGTTTGAGACTTTAATATTATA-TG-CAGGTCA
gi|2 : tCTGCTCACAGAAATTTCCAGCATAAAC---------T-----TGA----A---------ATAAGTGTAAAGATTGTATCTCAGCGATGACTTT-------T---AATTATTAG----ATTATTTA---AATTTCTTACCGAATAGCTGA-AATAATAT-GCTAGTAATGTAATCAGCACCACGGTCAATGAGACTTTAGAAAATGGCTGCTTAGCAGCGCTAACCTCGAC-TT------CAGTGGTATTGGGTTTTCGTCGACTATTAACCATGCCACGAGGAGGGATTT--T-GTGACCTAT---GCCTAGCGGAGACACTTT-GAC-AATCAAAAC-AATAGGG--T---CATAGTAG-TG-TAAAGAA--GCCGCC---GATTT-----TGT-T-----TGTTAACG---------------A-GAAACGTCATA-CATGTTCGAAAATCAAACTTGAAA-CG-CAAGGCGTA
gi|20 : taGAAGATACTTG-AAC-TGTCAACAC-CA-------T---C---GTA------------------CC---AATCT-----TGT-T-----TGATGCCGA--TTATTT-----AA-GAAACATCGTA-AACGTTTGAAAt
gi|21 : attcatatgtgatgaggtggggactaTCAAAAC-AAAAGGG--T---CAACATAG-TG-TAAAATG--GCGGTT---GATTT-----TGT-T-----TGATACCTA--GCGTTT-----AA-GAAAAGT---G-AACAT-----------ATTTGACAATG-CAAGGAATAGT
gi|22 : CGT-TCGAAGACACTTGTAAT--GACAAAACAAAAAAGG--T---CAAACTAG-TG-CTTCAAA--GT--------GTTT-----TTT-T-----TGgagatgt
gi|23 : tttatacccgttgtcgtttgtacttctgaCTCTAACTTGTTG-TG-CAAGGCATA
gi|23 : taagtatttgatgagctagtaatcagTTGCACAACAAGTTAGAG---AA--CTCAACTT-TAC------ATCAATACAAACAATaactcaactttacatcaatacaaacaatt
gi|24 : taagtatttgatgagctagtaatcagtatgccTGCATGGCAAGTCAGAGA--AA--CTCTGTTT-TAT------GTCATTTCAAACAAt
gi|25 : gttgtttacattacgattactgcatctccTTGCATAACAAATTAGAGA--AA--CTC-TTGTATAC------ATTATTCCATACAATGGTCTTAATGAAG-GGAA-------TTGc
gi|3 : atgccTATCAACTGACTTGGATAGCTGTACACAGAAA-TTGTAACATGAAC---------TCCCAATGATCTCA---------A---------AGATCATATATAAG---TGATTTTAGATAAAT---AATAATTAGCCTCATAA---ATGGGA-ATCAAACTAAATAGCAGATACCGGTATAATTT---ATAAAAT---CACCACTGTCAGTGGAACTTT-CAAAATGACTGTT
gi|3 : actacaattgtcatACTTTCA-TTATGCCATGAGGTCAGACTT-----T--CTTATC-----T-CTGG---CAT-----AT-AATCAAAAC-AAAAGGT--T---CAAAATAT-TG-CAAAAGC--TCTGCT---GATTT-----TCT-T-----TGATA---A---TGTTT-----AA-GAAATGGCATG----------------AATTTGATA-TT-CAAGGGATAGacctcgagaactttaactttcattatgccatgaggtcagactttcttatctctggcatataatcaaaacaaaaggttcaaaatattgcaaaagctctgctgattttctttgataatgtttaagaaatggcatgaatttgatattcaagggatag
gi|4 : actacaattgtcattatcaactgacttggatagctgtacacagaaattgtaacatgaactcccaatgatctcaaagatcatatataagtgattttagataaataataattagcctcataaatgggaatcaaactaaatagcagataccggtataatttataaaatcaccactgtcagtggaactttcaaaatgactgttacctcgagaactttaTGCATAACAAGTTAGAGC--AA--CTCAGTTT-TACATGTATGTCATTTTAAACAATGCTGATGAAGAAG-GAGA-------TTGTGTATGCAAC-------TTATCTCATCTCTGAGTTTGTTTTTACATATTGTTACACCTGATTGGCCGAATCAATT----GG-C--------CATTCCCTTATTTAGCTGTCAAACATGTCAATTGAAT--GATCATCG--------ACATAA-TT--ACTATG-GTTTATGTTTATATATATCAATTGATTTGACTCACTGCTCCCAGAAATTT-CAACATAAACTAGAAATGAT-----TGA----A---------A---------AGATTGTATCTCAATGATAATTTT--
gi|5 : TGTACTCAGCACCGCGATCAATTAAATTTTCCAAAATTACTGTTTTGCAGCGTTAATATCCGCGTTGTTATACA-T-GTACCTGGTTTCCAT------TC-ATCATGTTGTAAAGTGGGGCTTAA---TAACCTCTA--GCGA-TGAAATACATTTG-AAC-AGTCTAAA---------------------------CAAAAAT--GACGCC---GATTT-----GGT-T-----TGATATCGA--TTGTTA-----AA-GAAAGATCGTA-AATGTTTGAAATTCTAACTGGATA-TG-AAAAGCGTAATA
gi|6 : --GCGT-TCGAAGACACTTC-AAC-GGTCAAAAC-AAAATAG--TAAACAAA-TGG-TG-----AAA--ATCGCT----ATTT-----TTTGT-----TGACTCTGA--ACGTTT-----AA-GAAACGAC-TAGAACGATTGAAATTCTTACTTGATA-TG-AAAGGCCACGTATTT--TATAGTTTCGTG-----TTGATCAAACAAATGTATAATGTTTAATGTTTGTACAGACAA
gi|7 : gatttataccctatgttggtaatttgTAACATGATAGATATTAAGTTTT-GTTT----------GTCATTTTGTACAACGCTGATAATGAAG-GGAA-------TTATGTACGTGAT-------CTATCTCTCC-CCGAGCCTG---TTACATATTCTGACACGTGATTAACAAAGTCAGTTGTTAGA-CCGTTCCCACGTTCCCCTATTCAGCTGCCAAAC
gi|8 : C-ATTCAAAAC-AAAAGGG--T---CAGATTGG-TG-CAAAAAAAAGC-ACT---GTTTT-----TCC-TA----TGATATCAA--CTGTTC-----AA-GAAACACAGCG-GCTATTAGAAATTCTATTGTGATA-CA-CAAGGCATAGTAa
gi|9 : acgataatgatatcagacatggttttatgggatgTTAAAGC-AAATGGGATT---CCAA-CAC-TG-CAAAAAG--GCCAAC---ATTTT-----TCT-C-----TGATATTTA--TTGTTTTGTTTAA-TAAATATTGTG-AATATTTGTAATTCTAACACGATA-TG-CAAGa
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|26 ): CTAACGCAGATCAATCGGCGAATGACTGAGTATGATGACACTCGGTAAGAAATAATCAA
Unaligned ( gi|27 ): GGTATAACTAAATAAATAATTCATTTCATTTGTCGAAAGTCC
Unaligned ( gi|28 ): TATTACAAAAGAAAAAGCAATATAAAACTTACAA
Alignments
lowQualScore : 11111111111111111111111
lowQualScore : 1111 2 111111 2222222 2222222 2222222 2222222222 00000000000000000000000 22222 22222222222 666666666666666666666666666666666666666666 55555555555 333333333333333 1 444444444 333333 1 1 333333 222 333333 33333333 11 11 1
lowQualScore : 0000 66 5 55 444444 6 1111111 1 9 6666666 1111111 3 0 0 00 1 2 1 5555555555 1 44 88888888888888888888888 11111 8 33 66666666666 1 1 6 666666666666666666666666666666666666666666 6 00000000000 888888888888888 7 0 3 22 222222222 66 1 0 8 0 1 3 6 888888 3 6 3 0 2 0 3 66 3 1 888888 3 8 0 000 0 5 33 3 2 0 33 444 6 44 33 8888888 5555 66666 1 2 88888 0 555 66666 2 00 2 44 4 3 2 2 777777 11111111 1 22 88 88 5
lowQualScore : .... .. . .. ...... . ....... . . ....... ....... . . . .. . . . .......... . .. ....................... ..... . .. ........... . . . .......................................... . ........... ............... . . . .. ......... .. . . . . . . . ...... . . . . . . . .. . . ...... . . . ... . . .. . . . .. ... . .. .. ....... .... ..... . . ..... . ... ..... . .. . .. . . . . ...... ........ . .. .. .. .
lowQualScore : 7777 99 0 11 444444 7 7777777 4 6 0000000 2222222 8 2 2 55 0 5 0 0000000000 4 55 55555555555555555555555 00000 8 55 44444444444 4 0 7 555555555555555555555555555555555555555555 4 77777777777 777777777777777 3 7 3 00 000000000 88 2 2 8 8 0 7 7 333333 3 7 7 7 0 8 5 55 2 0 888888 8 2 6 666 7 0 99 1 5 3 44 444 5 33 33 6666666 6666 22222 9 5 88888 9 555 77777 7 77 7 00 7 7 7 7 333333 00000000 0 00 00 55 5
consensus : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTGCATAACAAGTTAGAGA--AA--CTC-GTTT-TAC------GTCATTTCAAACAATGCTGATGATGAAG-GGAA-------TTGTGTACGCGAC-------TTATCTCCTC-CCGAGTTTGTTTTTACATATTCTGACACGCGATTGGCCGANTCAGTTGTTAGG-C--------CGTTCCCCTATTCAGCTGCCAAACTTGTCAATCG--T--GA--ATCG--------ATATAA-CT--AGCGTGTGTTTA--TTTATATATATCGATTGATTTGGCTCGCTGCTCCCAGAAATTTCCAACATAAAC---------T-----TGA----A---------A---------AGATCGTATCTCAGCGATGACTTT--AT-AAT---AATAATTAG----ATAA---A---AATATCAAACCGAATAGCTGA-ANNAATAT-GCTA---ATGTAATCGGCACCGCGGTCAATGAAACTTTCCAAAATGACTGTTTTGCAGCGCTAACNTCCGCGTT------CA-TGGTACCCGGTTTCCGTCGACTATCAACCATGCCGTGAGGTGGGACTTAAT-TTAACCTATC--GCGT-TCGGAGACACTTG-AAC-AGTCAAAAC-AAAAGGG--T---CAAAGTAG-TG-CAAAAAA--GCCGCC---GATTT-----TNT-T-----TGATACCGA--TTGTTT-----AA-GAAACGTCGTA-AACGTTCGAAACTCTAACTTGATA-TG-CAAGGCATAGTACTT-GTAC-GTATCGTGAACATTTNACCAAANNAATGTATAATGTTTAACGTTTGTACAGACAA
Reference ( family-1978 ) : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTGCATAACAAGTTAGAGA--AA--CTC-GTTT-TAC------GTCATTTCAAACAATGCTGATGATGAAG-GGAA-------TTGTGTACGCGAC-------TTATCTCCTC-CCGAGTTTGTTTTTACATATTCTGACACGCGATTGGCCGANTCAGTTGTTAGG-C--------CGTTCCCCTATTCAGCTGCCAAACTTGTCAATCG--T--GA--ATCG--------ATATAA-CT--AGCGTGTGTTTA--TTTATATATATCGATTGATTTGGCTCGCTGCTCCCAGAAATTTCCAACATAAAC---------T-----TGA----A---------A---------AGATCGTATCTCAGCGATGACTTT--AT-AAT---AATAATTAG----ATAA---A---AATATCAAACCGAATAGCTGA-ANNAATAT-GCTA---ATGTAATCGGCACCGCGGTCAATGAAACTTTCCAAAATGACTGTTTTGCAGCGCTAACNTCCGCGTT------CA-TGGTACCCGGTTTCCGTCGACTATCAACCATGCCGTGAGGTGGGACTTAAT-TTAACCTATC--GCGT-TCGGAGACACTTG-AAC-AGTCAAAAC-AAAAGGG--T---CAAAGTAG-TG-CAAAAAA--GCCGCC---GATTT-----TNT-T-----TGATACCGA--TTGTTT-----AA-GAAACGTCGTA-AACGTTCGAAACTCTAACTTGATA-TG-CAAGGCATAGTACTT-GTAC-GTATCGTGAACATTTNACCAAANNAATGTATAATGTTTAACGTTTGTACAGACAA
gi|1 : TTGCATAACAAGTTAGA----------C-GTTT-GAC------GTCATTTGAAACAATGCTGATGATGAAT-GGAA-------TTGTAAACG-GTC-------TTATCTCTTCACTGAGTTTGTTTTTACATATTTTGACATGCGATTGGCCTATTCAATTGTTAGG-C--------CGTTCACCTATTCGACTGCCAAACTTGTCAACCG--TCAAA--ATCACAGTAATAATATAA-CTTGAGCGTGTGTTTA--TATATATATATCGATTTATTTAGTTCGCTGTTCCCAGAAATTTGTAACTTGAAC---------T-----TGA----A---------A---------AGATCGTATCTCAGCGATGACTGA--AT-AACTGAAATAATAAT----ATAA---A---AATATCAAAATGAAAAGTTGC-ATAAATA----TA---ATGTAATCGGCACCGCGGTCATTAAAATTTTCCGCAATGACTGGTGTGCAACGCGAACTTTTGCGTT------CA-TGATACCCGGTTTCTATTGGCTATCAACCATGTTATGA-----GACTGAACGTTAACATATTTGGATT-TCTGAGACATTTG-AAC-AGTCAAAAC-AAAATGG--T---CAAAGTAA-TG-CAAAAAA--GTCGCC---GATTT-----TGT-T-----TGATACCGA--TTGTTT-----AA-GAAGTCTCGTA-AAAGTTCGAAAGTCTAACTTGATA-TG-CAAGGCATACTACTTGGTGT-GTATC-TAAACATTTTACCAAAATAA--TATAATG--TAACATTTAT-CAAATAA
gi|10 : gtcctcgtcctatacgttctacctattcataATGCTGTTTGGTGGAACT-AAT-TTAAC-TCTT--GCGT-TCGATGGCACTTT-AAC-AGCCGAACC-AAATGGG--T----AAAATAATTG-CAAAA---------------------------------------CGA--TTGGTT-----AA-GAAACGGTATA-ATGGTTTGATACTCTTACTTGATA-TG-TAAAGCA
gi|11 : tttggctattccttA--AA--CTCTGTTT-TAC------GGCGATTTAAATGATGCTAATACCAAAA-GGAA-------TTGTGTATGTGACATGCGATTTATCTCCT-----------TTTTTACATGTTCTGACACGCTGCTGTTTGATTCAGTTGTTAGATC--------TTTTCCCCTATTCAGCTGTCA
gi|12 : AAACATTCA-AAC-AGTCAAAAC-AGAAGGT--T---CAAAGTTG-TG-CGAAATA---CCGCT---AATTA-----AAT-T-----TAATACCGA--TTGTTT-----AA-GAAACGTTGTA-AATATTCGAAATTCTAACATGATG-TGTTAAGCCA-AGT-CTT-G-AC-GTAT
gi|13 : tt-TTGGAGACTCTTG-AAC-GGTCAAAAT-GAAAGGC--T---CAAAGTAG-TGTTAAAGAA--GTCGCC---GATTT-----TGT-CTTTTATAATATCAA--TTGTTT-----GA-AAAACATTGTA-A----CCAAAACTCTAACTTGAGA-TG-CAAAGCAGAGTAgtaa
gi|14 : TTTGG-C--------CATTTCCCCATTCAGCTGTCAATCT----AAT--------A--AT-----------TACTA-C---AGTGTATGTTTA--TTTA---A-ATCCTTTGATTTGACTCGCTGTTCCCAGAAATTTCCAGCATAAAC---------T-----TGA----AATAATTGCCA---------AGACCGTATCTCAGTGAatgagg
gi|15 : GG-A--------CGTTACTCCATTCAGCTGCCAATCCTGTCTATC----------------------ATATAAGCT--A-CGTTTGTTTA--T--------ATTGATAGATTTTGCTCGCTGCTCTCAGAAATTTCCAACATAAAC---------T-----TGA----
gi|16 : ttGACATGTG-AACTAAT-AAAAC-AAAATAT--T---TTGAGCGG-TG-CAATAAA--GTCGCC---ATTTC-----TTT-T-----TGATACTGCTTTTTTTT-----CA-AAAATGCTGAG-AATATT------TTTTACTTGATG-TA-CAAGATATAATAtttgattgcatagaatgtatcgc
gi|17 : gtTTGCATAACAAGTTAGAGA--AC--CTCTACTT-TAC------ATCATTTCAAACAATGTTGGTGATGAAGAGGAAGTGAACCTTGCGAACATGAC-------TAAACTCCAC-TC-AGTTTGCTTTTGCATA
gi|18 : tacgatC-AAAAAGG--C---CAGTTTAA-TA--AAAAGG--GCCGCCTTTGTTTTCTTTTTCT-T-----TAATACCGA--GTGCTT-----AA-GAAACGTCACA-AACGCTCGAAACTC------GATA-GG-CAAGGC
gi|19 : gaacactat-AAA-AGTCAAAAC-AAA-GTG--T---CAAAA-AA-TG-CAAAAAA---TCGTC---AAAAT-----TGT-T-----TTATACCGA--TC-TCT-----AGTGAAATACCAAG-ATCGTTTGAGACTTTAATATTATA-TG-CAGGTCA
gi|2 : tCTGCTCACAGAAATTTCCAGCATAAAC---------T-----TGA----A---------ATAAGTGTAAAGATTGTATCTCAGCGATGACTTT-------T---AATTATTAG----ATTATTTA---AATTTCTTACCGAATAGCTGA-AATAATAT-GCTAGTAATGTAATCAGCACCACGGTCAATGAGACTTTAGAAAATGGCTGCTTAGCAGCGCTAACCTCGAC-TT------CAGTGGTATTGGGTTTTCGTCGACTATTAACCATGCCACGAGGAGGGATTT--T-GTGACCTAT---GCCTAGCGGAGACACTTT-GAC-AATCAAAAC-AATAGGG--T---CATAGTAG-TG-TAAAGAA--GCCGCC---GATTT-----TGT-T-----TGTTAACG---------------A-GAAACGTCATA-CATGTTCGAAAATCAAACTTGAAA-CG-CAAGGCGTA
gi|20 : taGAAGATACTTG-AAC-TGTCAACAC-CA-------T---C---GTA------------------CC---AATCT-----TGT-T-----TGATGCCGA--TTATTT-----AA-GAAACATCGTA-AACGTTTGAAAt
gi|21 : attcatatgtgatgaggtggggactaTCAAAAC-AAAAGGG--T---CAACATAG-TG-TAAAATG--GCGGTT---GATTT-----TGT-T-----TGATACCTA--GCGTTT-----AA-GAAAAGT---G-AACAT-----------ATTTGACAATG-CAAGGAATAGT
gi|22 : CGT-TCGAAGACACTTGTAAT--GACAAAACAAAAAAGG--T---CAAACTAG-TG-CTTCAAA--GT--------GTTT-----TTT-T-----TGgagatgt
gi|23 : tttatacccgttgtcgtttgtacttctgaCTCTAACTTGTTG-TG-CAAGGCATA
gi|23 : taagtatttgatgagctagtaatcagTTGCACAACAAGTTAGAG---AA--CTCAACTT-TAC------ATCAATACAAACAATaactcaactttacatcaatacaaacaatt
gi|24 : taagtatttgatgagctagtaatcagtatgccTGCATGGCAAGTCAGAGA--AA--CTCTGTTT-TAT------GTCATTTCAAACAAt
gi|25 : gttgtttacattacgattactgcatctccTTGCATAACAAATTAGAGA--AA--CTC-TTGTATAC------ATTATTCCATACAATGGTCTTAATGAAG-GGAA-------TTGc
gi|3 : atgccTATCAACTGACTTGGATAGCTGTACACAGAAA-TTGTAACATGAAC---------TCCCAATGATCTCA---------A---------AGATCATATATAAG---TGATTTTAGATAAAT---AATAATTAGCCTCATAA---ATGGGA-ATCAAACTAAATAGCAGATACCGGTATAATTT---ATAAAAT---CACCACTGTCAGTGGAACTTT-CAAAATGACTGTT
gi|3 : actacaattgtcatACTTTCA-TTATGCCATGAGGTCAGACTT-----T--CTTATC-----T-CTGG---CAT-----AT-AATCAAAAC-AAAAGGT--T---CAAAATAT-TG-CAAAAGC--TCTGCT---GATTT-----TCT-T-----TGATA---A---TGTTT-----AA-GAAATGGCATG----------------AATTTGATA-TT-CAAGGGATAGacctcgagaactttaactttcattatgccatgaggtcagactttcttatctctggcatataatcaaaacaaaaggttcaaaatattgcaaaagctctgctgattttctttgataatgtttaagaaatggcatgaatttgatattcaagggatag
gi|4 : actacaattgtcattatcaactgacttggatagctgtacacagaaattgtaacatgaactcccaatgatctcaaagatcatatataagtgattttagataaataataattagcctcataaatgggaatcaaactaaatagcagataccggtataatttataaaatcaccactgtcagtggaactttcaaaatgactgttacctcgagaactttaTGCATAACAAGTTAGAGC--AA--CTCAGTTT-TACATGTATGTCATTTTAAACAATGCTGATGAAGAAG-GAGA-------TTGTGTATGCAAC-------TTATCTCATCTCTGAGTTTGTTTTTACATATTGTTACACCTGATTGGCCGAATCAATT----GG-C--------CATTCCCTTATTTAGCTGTCAAACATGTCAATTGAAT--GATCATCG--------ACATAA-TT--ACTATG-GTTTATGTTTATATATATCAATTGATTTGACTCACTGCTCCCAGAAATTT-CAACATAAACTAGAAATGAT-----TGA----A---------A---------AGATTGTATCTCAATGATAATTTT--
gi|5 : TGTACTCAGCACCGCGATCAATTAAATTTTCCAAAATTACTGTTTTGCAGCGTTAATATCCGCGTTGTTATACA-T-GTACCTGGTTTCCAT------TC-ATCATGTTGTAAAGTGGGGCTTAA---TAACCTCTA--GCGA-TGAAATACATTTG-AAC-AGTCTAAA---------------------------CAAAAAT--GACGCC---GATTT-----GGT-T-----TGATATCGA--TTGTTA-----AA-GAAAGATCGTA-AATGTTTGAAATTCTAACTGGATA-TG-AAAAGCGTAATA
gi|6 : --GCGT-TCGAAGACACTTC-AAC-GGTCAAAAC-AAAATAG--TAAACAAA-TGG-TG-----AAA--ATCGCT----ATTT-----TTTGT-----TGACTCTGA--ACGTTT-----AA-GAAACGAC-TAGAACGATTGAAATTCTTACTTGATA-TG-AAAGGCCACGTATTT--TATAGTTTCGTG-----TTGATCAAACAAATGTATAATGTTTAATGTTTGTACAGACAA
gi|7 : gatttataccctatgttggtaatttgTAACATGATAGATATTAAGTTTT-GTTT----------GTCATTTTGTACAACGCTGATAATGAAG-GGAA-------TTATGTACGTGAT-------CTATCTCTCC-CCGAGCCTG---TTACATATTCTGACACGTGATTAACAAAGTCAGTTGTTAGA-CCGTTCCCACGTTCCCCTATTCAGCTGCCAAAC
gi|8 : C-ATTCAAAAC-AAAAGGG--T---CAGATTGG-TG-CAAAAAAAAGC-ACT---GTTTT-----TCC-TA----TGATATCAA--CTGTTC-----AA-GAAACACAGCG-GCTATTAGAAATTCTATTGTGATA-CA-CAAGGCATAGTAa
gi|9 : acgataatgatatcagacatggttttatgggatgTTAAAGC-AAATGGGATT---CCAA-CAC-TG-CAAAAAG--GCCAAC---ATTTT-----TCT-C-----TGATATTTA--TTGTTTTGTTTAA-TAAATATTGTG-AATATTTGTAATTCTAACACGATA-TG-CAAGa
blockSeqs : TATT GT T AT ATGTAT A GTGAACC T T ATGCGAT ATCTCTG T T G A CCGTTCCCA T CT TGAATGATCATCG GCT G AT TGTTTATATAT C C C TTGAAATAATTGCCA T AGATAAAT CCTCATAAATGG T T AT TGCTAGTA CA A A C G G GTTATA G G G C A AA G T AATT A C T A GT T A AT AAA A AT TT AAAAGC TTTG CTTTT A G TTTTA TTT TGTTT T G TG T C A T TATA GTG G CA TG TT A
blockSeqs : GA . T T . . . A T . TCCCCG C A G T TC T AT AAT TT C TT TTTAA G T C TTGAAATAAGTGTAA C T ATTATTTA . . CC TAATTT CA G C A C . . . . T . T A G A TTG G T C . T . . . . G G C AAGTC A . G . A T . . . AT C T . . GAC
blockSeqs : GA . A T . . . T C . CACTC T G . A C A T C C . G T A A C TCCCAATGATCTCAA T . A . . A G T TAA A C A . A . . . . G G C AAGTC G . T . . T . . . AT C C . .
blockSeqs : GA . T T . . . T T . CT . . A A A A G TAGAAATGATTGAAA . A T T . . . . G . . . . G G C GGGCC A . C . . T . . . AC C C . .
blockSeqs : GC . A T . . . C C . . G . . . . T A C AAGCC A . G . . G . . . TC T C . .
blockSeqs : G . . T . . T . . . . A A T TGGCG G . G . . T . . . AT C A . .
blockSeqs : . . . . . G . . . . G G T GCTCT A . G . . T . . . AC T C . .
blockSeqs : G . . . . G G C ATGAC G . G . . G . . . AC T T . .
blockSeqs : C . . . . A G C AAATC G . T . . T . . . AT T T . .
blockSeqs : . . . . . C T C AGGCC G . C . . A . . . AC A T . .
blockSeqs : . . . . A G C TACC G . G . . C . . . CT T T . .
blockSeqs : . . . . T G C AATC A . T . . T . . . AT . . . .
blockSeqs : . . . . C . AAGT . . C . . . . . . . . . . .
blockSeqs : . . . . . . . . . C . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . .
blockSeqCons : GA** CCT**** TCGAAATGATTGCAA*************************** TG**** N**
originalCons : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTGCATAACAAGTTAGAGA--AA--CTC-GTTT-TAC------GTCATTTCAAACAATGCTGATGATGAAG-GGAA-------TTGTGTACGCGAC-------TTATCTCCTC-CCGAGTTTGTTTTTACATATTCTGACACGCGATTGGCCGANTCAGTTGTTAGG-C--------CGTTCCCCTATTCAGCTGCCAAACTTGTCAATCG--T--GA--ATCG--------ATATAA-CT--AGCGTGTGTTTA--TTTATATATATCGATTGATTTGGCTCGCTGCTCCCAGAAATTTCCAACATAAAC---------T-----TGA----A---------A---------AGATCGTATCTCAGCGATGACTTT--AT-AAT---AATAATTAG----ATAA---A---AATATCAAACCGAATAGCTGA-ANNAATAT-GCTA---ATGTAATCGGCACCGCGGTCAATGAAACTTTCCAAAATGACTGTTTTGCAGCGCTAACNTCCGCGTT------CA-TGGTACCCGGTTTCCGTCGACTATCAACCATGCCGTGAGGTGGGACTTAAT-TTAACCTATC--GCGT-TCGGAGACACTTG-AAC-AGTCAAAAC-AAAAGGG--T---CAAAGTAG-TG-CAAAAAA--GCCGCC---GATTT-----TNT-T-----TGATACCGA--TTGTTT-----AA-GAAACGTCGTA-AACGTTCGAAACTCTAACTTGATA-TG-CAAGGCATAGTACTT-GTAC-GTATCGTGAACATTTNACCAAANNAATGTATAATGTTTAACGTTTGTACAGACAA
finalCons : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTGCATAACAAGTTAGAGA--AA--CTC-GTTT-TAC------GTCATTTCAAACAATGCTGATGATGAAG-GGAA-------TTGTGTACGCGAC-------TTATCTCCCT----AGTTTGTTTTTACATATTCTGACACGCGATTGGCCGANTCAGTTGTTAGG-C--------CGTTCCCCTATTCAGCTGCCAAACTTGTCAATCG--T--GA--ATCG--------ATATAA-CT--AGCGTGTGTTTA--TTTATATATATCGATTGATTTGGCTCGCTGCTCCCAGAAATTTCCAACATAAACTCGAAATGATTGCAA---------------------------AGATCGTATCTCAGCGATGACTTT--AT-AAT---AATAATTAG----ATAA---A---AATATCAAACCGAATAGCTGA-ANNAATAT-GCTA---ATGTAATCGGCACCGCGGTCAATGAAACTTTCCAAAATGACTGTTTTGCAGCGCTAACNTCCGCGTT------CA-TGGTACCCGGTTTCCGTCGACTATCAACCATGCCGTGAGGTGGGACTTG----TAACCTATN--GCGT-TCGGAGACACTTG-AAC-AGTCAAAAC-AAAAGGG--T---CAAAGTAG-TG-CAAAAAA--GCCGCC---GATTT-----TNT-T-----TGATACCGA--TTGTTT-----AA-GAAACGTCGTA-AACGTTCGAAACTCTAACTTGATA-TG-CAAGGCATAGTACTT-GTAC-GTATCGTGAACATTTNACCAAANNAATGTATAATGTTTAACGTTTGTACAGACAA
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|26 ): CTAACGCAGATCAATCGGCGAATGACTGAGTATGATGACACTCGGTAAGAAATAATCAA
Unaligned ( gi|27 ): GGTATAACTAAATAAATAATTCATTTCATTTGTCGAAAGTCC
Unaligned ( gi|28 ): TATTACAAAAGAAAAAGCAATATAAAACTTACAA
Alignments
lowQualScore : 11111111111111111111111
lowQualScore : 1111 2 111111 2222222 22222222 666666666666 2222222222 00000000000000000000000 22222 22222222222 55555555555 333333333333333 1 55555555 333333 1 1 22222 111111 333333 33333333 11 11 1
lowQualScore : 0000 66 5 55 444444 6 1111111 77777777 6 999999999999 0 0 0 00 1 2 1 5555555555 1 44 88888888888888888888888 11111 8 33 66666666666 1 1 66 4 1 6 0 55555555555 888888888888888 7 0 3 22 11111111 66 1 0 8 0 1 3 6 888888 3 6 3 0 2 0 3 66 8 00000 44 7 3 111111 5 33 3 2 0 33 444 6 44 33 8888888 5555 66666 1 2 88888 0 555 66666 2 00 2 44 4 3 2 2 777777 11111111 1 22 88 88 5
lowQualScore : .... .. . .. ...... . ....... ........ . ............ . . . .. . . . .......... . .. ....................... ..... . .. ........... . . .. . . . . ........... ............... . . . .. ........ .. . . . . . . . ...... . . . . . . . .. . ..... .. . . ...... . .. . . . .. ... . .. .. ....... .... ..... . . ..... . ... ..... . .. . .. . . . . ...... ........ . .. .. .. .
lowQualScore : 7777 99 0 11 444444 7 7777777 44444444 4 222222222222 8 2 2 55 0 5 0 0000000000 4 55 55555555555555555555555 00000 8 55 44444444444 4 0 22 8 0 5 2 33333333333 777777777777777 3 7 3 00 00000000 88 2 2 8 8 0 7 7 333333 3 7 7 7 0 8 5 55 0 33333 88 8 0 777777 0 99 1 5 3 44 444 5 33 33 6666666 6666 22222 9 5 88888 9 555 77777 7 77 7 00 7 7 7 7 333333 00000000 0 00 00 55 5
consensus : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTGCATAACAAGTTAGAGA--AA--CTC-GTTT-TAC------GTCATTTCAAACAATGCTGATGATGAAG-GGAA-------TTGTGT-------ACGCGACTTATCTC---C---CTC--AGTTTGTTTTTACATATTCTGACACGCGATTGGCCGANTCAGTTGTTAGG-C--------CGTTCCCCTATTCAGCTGCCAAACTTGTCAATCG--T--GA--ATCG--------ATATAA-CT--AGCGTGTGTTTA--TTTATATATATCGATTGATTTGGCTCGCTGCTCCCAGAAATTTCCAACATAAACTTGAAATGATTGCAAAGATCGTATCTCAGCGATGACTTTA--TAA-T---AATAATTAG----ATAA---A---AATATCAAACCGAATAGCTGA-ANNAATAT-GCTA---ATGTAATCGGCACCGCGGTCAATGAAACTTTCCAAAATGACTGTTTTGCAGCGCTAACNTCCGCGTT------CA-TGGTACCCGGTTTCCGTCGACTATCAACCATGCCGTGAGGTGGGA-CT--T-GTAACCTNTNGCG--T-TCGGAGACACTTG-AAC-AGTCAAAAC-AAAAGGG--T---CAAAGTAG-TG-CAAAAAA--GCCGCC---GATTT-----TNT-T-----TGATACCGA--TTGTTT-----AA-GAAACGTCGTA-AACGTTCGAAACTCTAACTTGATA-TG-CAAGGCATAGTACTT-GTAC-GTATCGTGAACATTTNACCAAANNAATGTATAATGTTTAACGTTTGTACAGACAA
Reference ( family-1978 ) : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTGCATAACAAGTTAGAGA--AA--CTC-GTTT-TAC------GTCATTTCAAACAATGCTGATGATGAAG-GGAA-------TTGTGT-------ACGCGACTTATCTC---C---CT---AGTTTGTTTTTACATATTCTGACACGCGATTGGCCGANTCAGTTGTTAGG-C--------CGTTCCCCTATTCAGCTGCCAAACTTGTCAATCG--T--GA--ATCG--------ATATAA-CT--AGCGTGTGTTTA--TTTATATATATCGATTGATTTGGCTCGCTGCTCCCAGAAATTTCCAACATAAACTCGAAATGATTGCAAAGATCGTATCTCAGCGATGACTTTA--TAA-T---AATAATTAG----ATAA---A---AATATCAAACCGAATAGCTGA-ANNAATAT-GCTA---ATGTAATCGGCACCGCGGTCAATGAAACTTTCCAAAATGACTGTTTTGCAGCGCTAACNTCCGCGTT------CA-TGGTACCCGGTTTCCGTCGACTATCAACCATGCCGTGAGGTGGGA-CT--T-GTAACCTATNGCG--T-TCGGAGACACTTG-AAC-AGTCAAAAC-AAAAGGG--T---CAAAGTAG-TG-CAAAAAA--GCCGCC---GATTT-----TNT-T-----TGATACCGA--TTGTTT-----AA-GAAACGTCGTA-AACGTTCGAAACTCTAACTTGATA-TG-CAAGGCATAGTACTT-GTAC-GTATCGTGAACATTTNACCAAANNAATGTATAATGTTTAACGTTTGTACAGACAA
gi|1 : TTGCATAACAAGTTAGA----------C-GTTT-GAC------GTCATTTGAAACAATGCTGATGATGAAT-GGAA-------TTGTAA-------ACG-GTCTTATCTC---TTCACTG--AGTTTGTTTTTACATATTTTGACATGCGATTGGCCTATTCAATTGTTAGG-C--------CGTTCACCTATTCGACTGCCAAACTTGTCAACCG--TCAAA--ATCACAGTAATAATATAA-CTTGAGCGTGTGTTTA--TATATATATATCGATTTATTTAGTTCGCTGTTCCCAGAAATTTGTAACTTGAACTTGAAA---------AGATCGTATCTCAGCGATGACTGAA--TAA-CTGAAATAATAAT----ATAA---A---AATATCAAAATGAAAAGTTGC-ATAAATAT----A---ATGTAATCGGCACCGCGGTCATTAAAATTTTCCGCAATGACTGGTGTGCAACGCGAACTTTTGCGTT------CA-TGATACCCGGTTTCTATTGGCTATCAACCATGTTATGAGACTGAA-CG--T--TAACATATTTGGATT-TCTGAGACATTTG-AAC-AGTCAAAAC-AAAATGG--T---CAAAGTAA-TG-CAAAAAA--GTCGCC---GATTT-----TGT-T-----TGATACCGA--TTGTTT-----AA-GAAGTCTCGTA-AAAGTTCGAAAGTCTAACTTGATA-TG-CAAGGCATACTACTTGGTGT-GTATC-TAAACATTTTACCAAAATAA--TATAATG--TAACATTTAT-CAAATAA
gi|10 : gtcctcgtcctatacgttctacctattcataATGCTGTTTGGTGGAA-CTAAT-TTAAC-TCTTGCG--T-TCGATGGCACTTT-AAC-AGCCGAACC-AAATGGG--T----AAAATAATTG-CAAAA---------------------------------------CGA--TTGGTT-----AA-GAAACGGTATA-ATGGTTTGATACTCTTACTTGATA-TG-TAAAGCA
gi|11 : tttggctattccttA--AA--CTCTGTTT-TAC------GGCGATTTAAATGATGCTAATACCAAAA-GGAA-------TTGTGTATGTGACATGCGATTTATCTC---C---T----------TTTTTACATGTTCTGACACGCTGCTGTTTGATTCAGTTGTTAGATC--------TTTTCCCCTATTCAGCTGTCA
gi|12 : AAACATTCA-AAC-AGTCAAAAC-AGAAGGT--T---CAAAGTTG-TG-CGAAATA---CCGCT---AATTA-----AAT-T-----TAATACCGA--TTGTTT-----AA-GAAACGTTGTA-AATATTCGAAATTCTAACATGATG-TGTTAAGCCA-AGT-CTT-G-AC-GTAT
gi|13 : tt-TTGGAGACTCTTG-AAC-GGTCAAAAT-GAAAGGC--T---CAAAGTAG-TGTTAAAGAA--GTCGCC---GATTT-----TGT-CTTTTATAATATCAA--TTGTTT-----GA-AAAACATTGTA-A----CCAAAACTCTAACTTGAGA-TG-CAAAGCAGAGTAgtaa
gi|14 : TTTGG-C--------CATTTCCCCATTCAGCTGTCAATCT----AAT--------A--AT-----------TACTA-C---AGTGTATGTTTA--TTTA---A-ATCCTTTGATTTGACTCGCTGTTCCCAGAAATTTCCAGCATAAACTTGAAATAATTGCCAAGACCGTATCTCAGTGAatgagg
gi|15 : GG-A--------CGTTACTCCATTCAGCTGCCAATCCTGTCTATC----------------------ATATAAGCT--A-CGTTTGTTTA--T--------ATTGATAGATTTTGCTCGCTGCTCTCAGAAATTTCCAACATAAACTTGATTTGATTGCATAGAATGTATC
gi|16 : ttGACATGTG-AACTAAT-AAAAC-AAAATAT--T---TTGAGCGG-TG-CAATAAA--GTCGCC---ATTTC-----TTT-T-----TGATACTGCTTTTTTTT-----CA-AAAATGCTGAG-AATATT------TTTTACTTGATG-TA-CAAGATATAATAgc
gi|17 : gtTTGCATAACAAGTTAGAGA--AC--CTCTACTT-TAC------ATCATTTCAAACAATGTTGGTGATGAAGAGGAAGTGAACCTTGCGA-------ACATGACTAAACTC---CA--CTC--AGTTTGCTTTTGCATA
gi|18 : tacgatC-AAAAAGG--C---CAGTTTAA-TA--AAAAGG--GCCGCCTTTGTTTTCTTTTTCT-T-----TAATACCGA--GTGCTT-----AA-GAAACGTCACA-AACGCTCGAAACTC------GATA-GG-CAAGGC
gi|19 : gaacactat-AAA-AGTCAAAAC-AAA-GTG--T---CAAAA-AA-TG-CAAAAAA---TCGTC---AAAAT-----TGT-T-----TTATACCGA--TC-TCT-----AGTGAAATACCAAG-ATCGTTTGAGACTTTAATATTATA-TG-CAGGTCA
gi|2 : tCTGCTCACAGAAATTTCCAGCATAAACTTGAAATAAGTGTAAAGATTGTATCTCAGCGATGACTTT-------T---AATTATTAG----ATTATTTA---AATTTCTTACCGAATAGCTGA-AATAATAT-GCTAGTAATGTAATCAGCACCACGGTCAATGAGACTTTAGAAAATGGCTGCTTAGCAGCGCTAACCTCGAC-TT------CAGTGGTATTGGGTTTTCGTCGACTATTAACCATGCCACGAGGAGGGATTT--T-GTGACCTAT-GCC--TAGCGGAGACACTTT-GAC-AATCAAAAC-AATAGGG--T---CATAGTAG-TG-TAAAGAA--GCCGCC---GATTT-----TGT-T-----TGTTAACG---------------A-GAAACGTCATA-CATGTTCGAAAATCAAACTTGAAA-CG-CAAGGCGTA
gi|20 : taGAAGATACTTG-AAC-TGTCAACAC-CA-------T---C---GTA------------------CC---AATCT-----TGT-T-----TGATGCCGA--TTATTT-----AA-GAAACATCGTA-AACGTTTGAAAt
gi|21 : attcatatgtgatgaggtggggactaTCAAAAC-AAAAGGG--T---CAACATAG-TG-TAAAATG--GCGGTT---GATTT-----TGT-T-----TGATACCTA--GCGTTT-----AA-GAAAAGT---G-AACAT-----------ATTTGACAATG-CAAGGAATAGT
gi|22 : T--T-GTA-CTTCTGACG--T-TCGAAGACACTTGTAAT--GACAAAACAAAAAAGG--T---CAAACTAG-TG-CTTCAAA--GT--------GTTT-----TTT-T-----TGgagatgt
gi|23 : tttatacccgttgtcgtCTCTAACTTGTTG-TG-CAAGGCATA
gi|23 : taagtatttgatgagctagtaatcagTTGCACAACAAGTTAGAG---AA--CTCAACTT-TAC------ATCAATACAAACAATaactcaactttacatcaatacaaacaatt
gi|24 : taagtatttgatgagctagtaatcagtatgccTGCATGGCAAGTCAGAGA--AA--CTCTGTTT-TAT------GTCATTTCAAACAAt
gi|25 : gttgtttacattacgattactgcatctccTTGCATAACAAATTAGAGA--AA--CTC-TTGTATAC------ATTATTCCATACAATGGTCTTAATGAAG-GGAA-------TTGc
gi|3 : atgccTATCAACTGACTTGGATAGCTGTACACAGAAATTGT-AACATGAACTCCCAATGATCTCAAAGATCATATATAAGTGAT---TTTAGATAAAT---AATAATTAGCCTCATAA---ATGGGA-ATCAAACTAAATAGCAGATACCGGTATAATTT---ATAAAAT---CACCACTGTCAGTGGAACTTT-CAAAATGACTGTT
gi|3 : actacaattgtcatACTTTCA-TTATGCCATGAGGTCAGA-CT--T--T--CTTATC-----T-CTGG---CAT-----AT-AATCAAAAC-AAAAGGT--T---CAAAATAT-TG-CAAAAGC--TCTGCT---GATTT-----TCT-T-----TGATA---A---TGTTT-----AA-GAAATGGCATG----------------AATTTGATA-TT-CAAGGGATAGacctcgagaactttaactttcattatgccatgaggtcagactttcttatctctggcatataatcaaaacaaaaggttcaaaatattgcaaaagctctgctgattttctttgataatgtttaagaaatggcatgaatttgatattcaagggatag
gi|4 : actacaattgtcattatcaactgacttggatagctgtacacagaaattgtaacatgaactcccaatgatctcaaagatcatatataagtgattttagataaataataattagcctcataaatgggaatcaaactaaatagcagataccggtataatttataaaatcaccactgtcagtggaactttcaaaatgactgttacctcgagaactttaTGCATAACAAGTTAGAGC--AA--CTCAGTTT-TACATGTATGTCATTTTAAACAATGCTGATGAAGAAG-GAGA-------TTGTGT-------ATGCAACTTATCTCA--T---CTCTGAGTTTGTTTTTACATATTGTTACACCTGATTGGCCGAATCAATT----GG-C--------CATTCCCTTATTTAGCTGTCAAACATGTCAATTGAAT--GATCATCG--------ACATAA-TT--ACTATG-GTTTATGTTTATATATATCAATTGATTTGACTCACTGCTCCCAGAAATTT-CAACATAAACTAGAAATGATTGAAAAGATTGTATCTCAATGATAATTTT
gi|5 : TGTACTCAGCACCGCGATCAATTAAATTTTCCAAAATTACTGTTTTGCAGCGTTAATATCCGCGTTGTTATACA-T-GTACCTGGTTTCCAT------TC-ATCATGTTGTAAAGTGGGG-CT--TAATAACCTCTAGCG--A-TGAAATACATTTG-AAC-AGTCTAAA---------------------------CAAAAAT--GACGCC---GATTT-----GGT-T-----TGATATCGA--TTGTTA-----AA-GAAAGATCGTA-AATGTTTGAAATTCTAACTGGATA-TG-AAAAGCGTAATA
gi|6 : TGGCG--T-TCGAAGACACTTC-AAC-GGTCAAAAC-AAAATAG--TAAACAAA-TGG-TG-----AAA--ATCGCT----ATTT-----TTTGT-----TGACTCTGA--ACGTTT-----AA-GAAACGAC-TAGAACGATTGAAATTCTTACTTGATA-TG-AAAGGCCACGTATTT--TATAGTTTCGTG-----TTGATCAAACAAATGTATAATGTTTAATGTTTGTACAGACAA
gi|7 : gatttataccctatgttggtaattTAACATGATAGATATTAAGTTTT-GTTT----------GTCATTTTGTACAACGCTGATAATGAAG-GGAA-------TTATGT-------ACGTGATCTATCTCTCCC---CG---AGCCTGTT---ACATATTCTGACACGTGATTAACAAAGTCAGTTGTTAGA-CCGTTCCCACGTTCCCCTATTCAGCTGCCAAAC
gi|8 : C-ATTCAAAAC-AAAAGGG--T---CAGATTGG-TG-CAAAAAAAAGC-ACT---GTTTT-----TCC-TA----TGATATCAA--CTGTTC-----AA-GAAACACAGCG-GCTATTAGAAATTCTATTGTGATA-CA-CAAGGCATAGTAa
gi|9 : acgataatgatatcagacatggttttatgggatgTTAAAGC-AAATGGGATT---CCAA-CAC-TG-CAAAAAG--GCCAAC---ATTTT-----TCT-C-----TGATATTTA--TTGTTTTGTTTAA-TAAATATTGTG-AATATTTGTAATTCTAACACGATA-TG-CAAGa
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|26 ): CTAACGCAGATCAATCGGCGAATGACTGAGTATGATGACACTCGGTAAGAAATAATCAA
Unaligned ( gi|27 ): GGTATAACTAAATAAATAATTCATTTCATTTGTCGAAAGTCC
Unaligned ( gi|28 ): TATTACAAAAGAAAAAGCAATATAAAACTTACAA