lowQualScore : 111111111 11 55555555555555555555555555 1111 1 11 11111111111 1 1111 1
lowQualScore : 3333 0 22 6 444444444 7 66 4 9999 333 22222222222222222222222222 888888888 2 33 2 2 55 2 7 4444 0 6 55555 88 4 33333333333 4444 7 999 8888 1
lowQualScore : .... . .. . ......... . .. . .... ... .......................... ......... . .. . . .. . . .... . . ..... .. . ........... .... . ... .... .
lowQualScore : 5555 8 33 1 222222222 0 55 5 1111 777 33333333333333333333333333 999999999 2 11 9 8 33 2 1 1111 5 6 33333 55 8 88888888888 7777 0 555 9999 4
consensus : TCACAGGTTTGTGACGACAGGGTAAC----GGAGGCGTGTCGATCCTTATTTCAATGTCACGGATTCAGTG--TCGATAGTTTTAACATTGTAGAATAG-------TGCAACCCTACGCAAA-TACTGCCATTTACACTTCGGGTCTCGCACAGAGGCTGTCCGGCATATAGTT--TTAG---AGCA----------T-------------TGTC---------GTTAT-GTTACGGATTA--AGTCGGTGAAAGTTAGAACCGACACACGGAAGCAAAACAA-TACCTCGGTACTT---ACAACCCAANAGC-----AATAGTCGTGTTTCGTGAGACTTCCGCTGGTAGTTT-AAAACTATACA------T----A----TAACGAATCATTTTAGGG-A-AAAATTG--NCACTTTTTATACG
Reference ( gi|3 ) : TCACAGGTTTGTGACGACAGGGTAAC----GGAGGCGTGTCGATCCTTATTTTAATGTCACGGATTCAGTG--TCGATAGTTTTAACACTGTAGAATAG-------TTCAACCCTACGCCAT-TACTGCCATTTACACTTCGAGTCTCGTACAGAGACTGTCCGGCATATAGTT--TTAG---AGCA----------T-------------TTTC---------GTTAT-GTTACGGATTA--AGTCGGTGAAAGTTAGAACCGACACACGGAAGCAAAACAA-TACTTCGGTACTT---GCAACACAATAGC-----AATAGTCATGTTTCGTGAGACTTCCGCTGGTAGTTT-TAAACTCTACA------T----A----TAACGTATCATTTTAGGG-G-AAAATTC--TCACTTTTGATACG
gi|4 : TTACAGGTTTGTGACGACAGGGTTAT----GGAGGCGTGTCGATCCTTATTTTAATGTCACTGATTCAGTG--TCGATAGTTTTAACATCGTAGAATAG-------TTTAACCCTACGCCAT-TACTGCCATTTACACTTCGAGTCTCGTACAGAGGCTGTCCAGCATATAGTT--AAAG---AGCA----------T-------------TGTC---------GTTAT-GTTACGGATTA--AGTCGGTGAAAGTTAGAACCGACACAAGGAAGCAAAACAA-TACCTCGGTACTT---AAAACACAATAGC-----AATAGTCATGTTTCGTGATACTTCCGTTGGTAGTTT-TTAACTCTACA------T----A----TAAAGAATCATTTTAGGG-GAAAAATTG--TCACTTTCGATAC
gi|8 : TCACAGGTTTGTGACGACAGGGTAAC----GGAGGCATGTCGATCCTTTTTTTAAAGGCACGGATTCAGTG--TCGATAGTTTTAACATTGTAGAATAG-------TGCAACCCTACGCCAA-TACCGCCATTTACAC----------GTACAGAGGCTGTCCGGCATATAGTT--TTAG---AGCA----------T-------------TGTC---------GTTAT-GTTACGGATTA--AGTCTGTGAAAGTTAGAACCGACACACAGAAGCAAAACAA-TATCTCGGTACTT---ACAACGCAATAGC-----AAAAGTCATGTTTCGTGAGACTTCCGCTGGTAGTTT-AAAACTCTACA------T----A----TAACGAATCATTTTAGGG-G-AAAATTG--TCACTTTTTAT
gi|10 : gTCACAGGTTTGTGACGACAGGGTAAC----GGAGGCGTGTCCATCCATATTTTAATGTCACGGATTCAGTG--TCGATAATTTTTACATTGTAGAATAG-------TGCAACCCTACG-CATATACTGCCATTTACACTTCAAGTCTCGTACAGAGGCTGTCCGGTATATAGTT--TTAG---AGCA----------T-------------TGTG---------GTTAT-GTTACGGATCA--AGTCCGTGAAAGTTAGAACCGACACACGGAAGCAAAACAA-TACCTCGGTACTT---ACAACCCAAAAGC-----A--AGTCATGTTTTGTGATACTTCCGTTACTAG
gi|20 : gTCACAGGTTTGTGACGACAGGGTAACTAACGGAGGCGTGTCGATCCTTATTTTAATGTCACGGACTCAGTG--TCGATAGTTTTAACATTGTAGAATAG-------TGCAACCCTACGCCAA-TACTGCCATTTACACTTCGAGTCTCGTAAAGAAGCTGTCCGGCATATAGTT--TTatgaaacaccttaatcaaattgaatagatgca
gi|23 : gTTACAGGTTTGTGACGACAGGGTAAC----GGAGGCGTGTCGATCCTTATTTTAATGTCACGGATTCAGTG--TCGATAGTTTTAACATTGTAAAATAG-------TGCAACCCTACGTCAA-TACTGCCATTTACACTTCGAGTC
gi|35 : TCACAGCTTTG---CGACATGGTAAC----GAAGGTATGTCGAT
gi|9 : aattgCACAGGTTTGTGACGACAGGGTAAC----GGAGGCATGGCGATCCTTATTTTAATGTCACGTATTCAGTG--TCGATAGCTTTAACATTGTAGAATAG-------GGCAACCCTACGCAAA-TACTGCCATTTACACTTCGAGTCTCGTACAGAGGCTGTCCGGATTATAGTT--TTAA---AGCA----------T-------------TGTC---------TTTAT-GTTACGGATTA--AGTCGGTGAAAGTTAGAACTGACATACGGAAGCAAAACAA-TACCTCGGTACT------AACCCAGTAGC-----AATAGTCATGTTTCGTGAGACTTCCGTTGGTAATTTAAAAACTATACA------T----A----TAACGAATCATTTTAGGG-A-AAAA
gi|7 : CACAGGTTTGTGACGACAGGGTAAC----GGAGGCATGGCGATCCTTATTTTAATGTCACGTATTCAGTG--TCGATAGCTTTAACATTGTAGAATAG-------GGCAACCCTACGCAAA-TACTGCCATTTACACTTCGAGTCTCGTACAGAGGCTGTCCGGATTATAGTT--TTAA---AGCA----------T-------------TGTC---------TTTAT-GTTACGGATTA--AGTCGGTGAAAGTTAGAACTGACATACGGAAGCAAAACAA-TACCTCGGTACT------AACCCAGTAGC-----AATAGTCATGTTTCGTGAGACTTCCGTTGGTAATTTAAAAACTATACA------T----A----TAACGAATCATTTTAGGG-A-AAAAatgccaat
gi|6 : CACAGGTTGGTGACGACAGGGTAAC----GGAGGCGTGTCGATCCATATTTTAATGTCACAGATTCAGTG--TCAATAGTGTTAACATTGTAGAATAG-------TGCAACCCAACGCAAA-TACTGCCATTTACACTTCAAGTCTCGTGCAGAGGCTGTCTGGTATATAGTT--TTAG---AGCA----------T-------------TGTC---------GTTAT-GTTACGGATCA--AGTCCGTGAAAGTTTGAACCGACACATGGGCGTAAAATAA-TACCTCGGTACTT---ACAACCCAAAAGC-----AATAGTCATGTTTCGTGATACTTCTGCTGGTAGTTT-AAAACTCTACA------T----A----TAACGAATCATTTTAGAG-A-AAAATTG--CCACTTatgccaat
gi|11 : CACAGGTTTGTGACGACAGGGTAAC----GGAGAAGTGTCGATCCCTATGTTAATGTCACGGATTCAGTG--TCAATAGTTTTAACATTGTAGAATAG-------TGTAACCCTACGCCAA-TACTGCCATTTACACTTCGAGTCTCGTACAGAGGCTGTCCG--------------------GCA----------T-------------TGTC---------GTTAT-GTTATGGATTA--TGTATGTGAAAGTTAAAACCGACTCACAGAAGCAAAACAA-TACCTCGGTACTT---ACAACCAAATAGC-----AATAGTCATGTTTCGTGAGACTTGTGCTGGTAGTTT-AAAACTCTACA------T----A----TAACGAATCATTTTAGGA-A-AAAATTG--TCACT
gi|5 : ACATGTTTGTGACGACAGGGTAAC----GGAGGCGTGTTGATCCTTATTTAAATGTCACGGATTCAGTG--TCGATAGTTTTAACATTGTAGAATAG-------TGCAACCCTACGCAAA-TACTGCCATTTACACTTCGGGTCTCGTACTGAGGCTGTCCGGCATATAGTT--TAAG---AGCA----------T-------------TGTA---------GTTAT-GTTACGGATTA--AGTCGGTGAAAGTTAGTACCGGCATACCGAAGCAAAACAA-TACCTCGGTACTT---ACAACCCAAAAGC-----AATATTCATGTTTCGTGAGACTTCCGCTGGTAGTTT-AAAACTCTTCA------T----A----TAACGAATCATTTTAGGG-G-AAAAAACGGCCACTTTTTATA
gi|19 : ACAGTTTTGTGACGACAGGGTAAC----AGAGGCATGTCGATCCTTATTTCAATGTCACGGATTAAGTG--T--------------CTGTAGAATAG-------TGCAA-CCTATACAAA-TACTGCCATTTACACTTCGGATCTCGCACGGAGGCTGTCTGGCATATAGTA--CTAG---ATCA----------T-------------
gi|28 : CAGGTTTATGACGACAGGGTAAC----AGAGGCGTGTCGATCCTTATTTTAATGTCACGGATTCAGTG--TCGATAGTTTTAACATTGTAGAATAG-------Tcaacaaggaaagctgtcgtt
gi|13 : AGCTCTGTGACGACAGGGTAAC----GGAGGCACGTCGATCCTTATTTCAATGTCACAGATTAAGTG--TCGATGTTTTTATCATTGTAGAATAG-------TGCTACACTATGCAAA-TACTGCGATTTACACTGGGATTTT--TACAGAAATTGTCCAGCATTTAATA--TTAA---AACA----------TCCAAAAAGAAAGGTGTC---------GTTAT-GTTACGGACTA--AGTCCGTGAAAGCTATTACCG--ACACTGAAGCAAAACAA-TACCTCGGTACTT---TCATCCCAAAAGC-----AATAGTCATGTTTCATGCAACTTCg
gi|17 : AGCTTTCTGAGGACAGTGTAAC----AGAGGCGTGTGGATCTTAATATCAATGTCACAGATTCAGTG--TAGAGAGTTTTAACATTGTAGACTAG-------TGCAACCCTATGAAAA-TACTGCAATTCACACTTCTGGTCTCGCACAGAGGCTTATCGGCATATAGT-----------ACA----------T--------------------------GT-----------ACTA--GACCATCAAAA--TGGAACTGACACA--GAAGCAAAACAA-TACCTCGATACTT---
gi|25 : GGTTTGTGAAGACAGGTTACC----GGAGGCGTGTCGATCCTTATTTCAATGTCACGGATTCAATG--TCGATAGTGTTAACAATGTAGAATAG-------TGCAACCCTATGCAAA-AACTGCTTTTTACACTtc
gi|2 : TTTGTGACGGCAAGGTAAC----AGAGGTGTGTCGATCCTTATTTCAATGTCATGTATTCAATG--TCGATAGTTCCAACATTGCAGAATAG-------TGCAACCCTATGCAAA-TACTGCCATTTACACTTGGGGTCTTGCACGGAGGCTGTCCGGCATATAATA--CTAG---ATCA----------TCAAAAAGGAAAGCTGTC---------ATTAC-GTTACGGACTA--AGTCGGTGGAAGTTAGTACCG--ACACTGAAGCAAAACAA-TACCTCGGTACTT---TCATCCAAAAATC-----AATAGTCGTGTTTTGTGAGAC-TCCACTTGCAGTTT-AAAACTATACA------TTATAA----TAACGAATCATGTTA--G-A-CAAATTG--ACACCTTTTAT
gi|1 : cTTTGTGACGGCAAGGTAAC----AGAGGTGTGTCGATCCTTATTTCAATGTCATGTATTCAATG--TCGATAGTTCCAACATTGCAGAATAG-------TGCAACCCTATGCAAA-TACTGCCATTTACACTTGGGGTCTTGCACGGAGGCTGTCCGGCATATAATA--CTAG---ATCA----------TCAAAAAGGAAAGCTGTC---------ATTAC-GTTACGGACTA--AGTCGGTGGAAGTTAGTACCG--ACACTGAAGCAAAACAA-TACCTCGGTACTT---TCATCCAAAAATC-----AATAGTCGTGTTTTGTGAGAC-TCCACTTGCAGTTT-AAAACTATACA------TTATAA----TAACGAATCATGTTA--G-A-CAAATTG--ACACCTTTTAT
gi|12 : cTTTGTGACGACAGGTTTAC------AGGCGTGTCGATCCTTATTTCAATGTCACAGATTCAGTG--TAGAGAGTTTTAACATTGTAGAATAGTGCACTTTTTAATCCTATGAAAA-TACTGACATTTACACTTCTGGTCTTGCATAGAGGCTG-CCGGCATATAGTA--GTAGATCAGCAAAAAGGATAGC-------------TGTC---------GTTAC-GTTACAGACTAAGAGTCGGTG---------------------AAGCAAAACAA-TACT----TAC--------ATAAAA-AGC-----AATGGTTGTGTTCCGTGAGACTTCCGCTGGCAGTTT-AAAACTATACA------T----A----
gi|14 : gcTTTGTGACGACAGGG---C----AGAG-CGTGTCGATCCTTCTTTCAATGTCAGAGATTCAGTGAAGAGAGAGTTGTAACATTGTAGAATAG-------TGCAACCCTATGAAAA-TACTGCCATTCACACTTCTGGTCTTGCACAGAGGCTGTCC--------------------AGCA----------T-----------------------------AT-AGTAC----TA--GACCATCAAAA--TGGAACTGACACA--GAAGCAAAACAATTAC-TCGATACTT---TCATCAAAAGAGC-----AATAGTTGTGTTTCCCCAGACTTACACTCACAGTTT-AAAACTATACA------TA---A----TAA
gi|22 : gcTTTGTGACGACAGGATAAC----GGAGGCGCGTCGATCCTTATTT--------------CAATG--TCGATCGTTTTAACATTGTAGAATAG-------TGCAACCATATGCAAA-AACTGCCATTTACACTTCGGGTCTCGTACCAAGACTGTCCGGCATATGCTA--GTAG---AGCtaacaaacttt
gi|32 : TTTGTGACGACAGAGTAAC----AGAGGCGTGTCGATCCTTATTTTAATGTCACGGATTAAGTG--TCGATAGTTTT
gi|27 : TTTGTGACGACAGGGTAAG----GGAGGCGTTTCGATCCTTGTTTCAATGTCAGGGATTCAGTG--TCGATAGTTTTAAC
gi|31 : gc----GGAGGTATGTCGATTACAATTTCAATGTCGCGGA-TAAGTG--TCGATATTCTAAACAGTGCAGAATAGCATT---TTCAATCgaattacagaggtttatataatatttcacaccat
gi|15 : ATTAAGAG--TCGATAGATTTAACATTGTAGAATAG-------TGCAACCCTATGTAGA-TACTGCCATTTACAC--------------AGAGGTTGTCCGGCATATAGACAATTAG---AGCA----------T-------------C--CAAAAAGAAAGTTGTCGTTAC----TA--AGTCGTTGAAAGTTAGAACCGTTAC--TGAAGCAAAACAA-TACCCCGGTACTT---TCATCTCAAAAGCAATATAATAGTCGTGCTTCGTGAGACTTCTGTTGGCAGTTta
gi|24 : TTTTAACATTGCAGAATAG-------TGCAACCCTATGCAAA-TACTGCCATTTACACTTCGGGTCTCGCACGGAGGCTGTCCGGCGTAgaaaatgaatcatgttaatgacaaattgcaatgt
gi|16 : ACCCTACGCCAA-TACTGCCATTTACACTTCGAGTCTCGCACAGAGGCTGTCCGGCATATAGTT--TGAG---AGCA----------T-------------TGTC---------GTTAT-GTTACGGATTA--TGTCTGTGAAAGTAAGAACCGACACACAGAAGCAAAACAA-TACCTCGGTATTT---ACAACCCAATAGC-----AATAGTCATGTTTTG-GAGACTT--ACT--TAA-----AAACTATATA------T----A----TAACGAATCATTTTAGGGAA-AAAATTG--TCACTTTTTATATGacgtgaaaaaagtcggtcgtgaaaaagtagacttcgtcat
gi|18 : ---AGCA----------T-------------TGTC---------GTTAT-GTTACGGATTA--AGTCTGTGAAAGTTAGAACCGACACACAGAAGCAAAACAA-TACCTCAGTACTT---ATAGCTCAATAGC-----AATAGTCATGTTTCGTGAGACTTGCGTTGGTAGTTT-AAAACTCTACA------T----A----TAACAAATCATTTTAGGG-A-AAAATTG--TCACTTTTTATAta
gi|21 : TC---------GTTAT-GTTACGGATTA--AGT----------TAGAACCAACACTCGGAATCAAAACAA-TACCTGGATATTTTGTACAACCCAAAAGC-----AATAGTCATGTTTCGTGAGACTTCCGCTGGTAGTTT-AAAACTCTACATAAAATT----A----TAACGAATCATTTTAGGT-G-GGAATT
gi|29 : CAATAGC-----AATAGTCATGATTTGTGAGACTTGCGCTGGTAGTTA-AAAACTATACA------T----A----TAACGAATCATTTTAGGGAA-AAAATTG--TCACTgcca
gi|30 : -----AATAGTCATGTTTCGTGCGACTTCCGCTGGCAG--T-TAA--TATACATAAT--T----A----TAACAAATCCTTTTAGGG-A-TAAATTG--CCAC
gi|33 : ACTTCCGCTGGCAGTTT-AAAACTTTACA------T----A----CAATGAAATATTTTAGGG-A-CAAATTG--CCAGTTT
gi|34 : ACTATGCA------T----AATAATAACGAACCATTTTAGGG-A-CAAATTG--ACACTTT
1 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|26 ): TATTCTTAACATTGCAGAAGAGTACAGCCCTGTGCAAATACTTTCACGGTCCTTTGGAAGGGTACAGAGGCTATTTGGTATTTTAATATCAATGATACCAAGGAGAAGGAA
Alignments
lowQualScore : 44444444444444444444444444444444444 11111111111
lowQualScore : 3333 22 22 5555555 222 333 0 7777 333 33333333333333333333333333333333333 22 2 2 33 5555 1 1 55555 2 4 3 55555555555 4444 2 77 1
lowQualScore : .... .. .. ....... ... ... . .... ... ................................... .. . . .. .... . . ..... . . . ........... .... . .. .
lowQualScore : 4444 22 11 7777777 999 000 6 7777 555 99999999999999999999999999999999999 99 2 2 99 4444 8 0 00000 0 0 1 00000000000 2222 2 55 0
consensus : TCACAGGTTTGTGACGACAGGGTAAC----GGAGGCGTGTCGATCCTTATTTCAATGTCACGGATTCAGTG--TCGATAGTTTTAAC--ATTGTAGAATAGTGC-------AACCCTACGCAAATACTGCCATTTACA---CTTCG---GGTCTCGTACAGAGGCTGTCCGGCATATAGTT--TTAG---AGCA----------T-------------T----------GTCGTTATGTTACGGATTA--AGTCGGTGAAAGTTAGAACCGACACACGGAAGCAAAACAATACCTCGGTACTT---ACAACCCAANAGCAATA-----GTCATGTTTCGTGAGACTTCCGCTGGTAGTTT-AAAACTNTACA------T----A----TAACGAATCATTTTA-GGG--AAAAATTGCCACTTTTTATACG
Reference ( family-194 ) : TCACAGGTTTGTGACGACAGGGTAAC----GGAGGCGTGTCGATCCTTATTTCAATGTCACGGATTCAGTG--TCGATAGTTTTAAC--ATTGTAGAATAGTGC-------AACCCTACGCAAATACTGCCATTTACA---CTTCG---GGTCTCGCACAGAGGCTGTCCGGCATATAGTT--TTAG---AGCA----------T-------------T----------GTCGTTATGTTACGGATTA--AGTCGGTGAAAGTTAGAACCGACACACGGAAGCAAAACAATACCTCGGTACTT---ACAACCCAANAGCAATA-----GTCGTGTTTCGTGAGACTTCCGCTGGTAGTTT-AAAACTATACA------T----A----TAACGAATCATTTTA-GGG--AAAAATTGNCACTTTTTATACG
gi|1 : TTTGTGACGGCAAGGTAAC----AGAGGTGTGTCGATCCTTATTTCAATGTCATGTATTCAATG--TCGATAGTTCCAAC--ATTGCAGAATAGTGC-------AACCCTATGCAAATACTGCCATTTACA---CTTGG---GGTCTTGCACGGAGGCTGTCCGGCATATAATA--CTAG---ATCA----------TCAAAAAGGAAAGCT----------GTCATTACGTTACGGACTA--AGTCGGTGGAAGTTAGTACCG--ACACTGAAGCAAAACAATACCTCGGTACTT---TCATCCAAAAATCAATA-----GTCGTGTTTTGTGAGAC-TCCACTTGCAGTTT-AAAACTATACA------TTATAA----TAACGAATCATGTTA---G--ACAAATTGACACCTTTTAT
gi|10 : cTCACAGGTTTGTGACGACAGGGTAAC----GGAGGCGTGTCCATCCATATTTTAATGTCACGGATTCAGTG--TCGATAATTTTTAC--ATTGTAGAATAGTGC-------AACCCTACGCATATACTGCCATTTACA---CTTCA---AGTCTCGTACAGAGGCTGTCCGGTATATAGTT--TTAG---AGCA----------T-------------T----------GTGGTTATGTTACGGATCA--AGTCCGTGAAAGTTAGAACCGACACACGGAAGCAAAACAATACCTCGGTACTT---ACAACCCAAAAGCA--A-----GTCATGTTTTGTGATACTTCCGTTACTAGATG-AAA
gi|11 : gCACAGGTTTGTGACGACAGGGTAAC----GGAGAAGTGTCGATCCCTATGTTAATGTCACGGATTCAGTG--TCAATAGTTTTAAC--ATTGTAGAATAGTGT-------AACCCTACGCCAATACTGCCATTTACA---CTTCG---AGTCTCGTACAGAGGCTGTCCGGCAT-------------------------------------------T----------GTCGTTATGTTATGGATTA--TGTATGTGAAAGTTAAAACCGACTCACAGAAGCAAAACAATACCTCGGTACTT---ACAACCAAATAGCAATA-----GTCATGTTTCGTGAGACTTGTGCTGGTAGTTT-AAAACTCTACA------T----A----TAACGAATCATTTTA-GGA--AAAAATTGTCACTcaccttaatcaaattgaatagatgca
gi|12 : TTTGTGACGACAGGTTTAC------AGGCGTGTCGATCCTTATTTCAATGTCACAGATTCAGTG--TAGAGAGTTTTAAC--ATTGTAGAATAGTGCACTTTTTAATCCTATGAAAATACTGACATTTACA---CTTCT---GGTCTTGCATAGAGGCTG-CCGGCATATAGTA--GTAGATCAGCAAAAAGGATAGC-------------T----------GTCGTTACGTTACAGACTAAGAGTCGGT---------------------GAAGCAAAACAA--------TACTT---ACA--TAAAAAGCAATG-----GTTGTGTTCCGTGAGACTTCCGCTGGCAGTTT-AAAACTATACA------T----A----
gi|13 : gcAGCTCTGTGACGACAGGGTAAC----GGAGGCACGTCGATCCTTATTTCAATGTCACAGATTAAGTG--TCGATGTTTTTATC--ATTGTAGAATAGTGC-------TACACTATGCAAATACTGCGATTTACA---CT--G---GGATTTTTACAGAAATTGTCCAGCATTTAATA--TTAA---AACA----------TCCAAAAAGAAAGGT----------GTCGTTATGTTACGGACTA--AGTCCGTGAAAGCTATTACCG--ACACTGAAGCAAAACAATACCTCGGTACTT---TCATCCCAAAAGCAATA-----GTCATGTTTCATGCAACTTC
gi|14 : TTTGTGACGACAGGG---C----AGAG-CGTGTCGATCCTTCTTTCAATGTCAGAGATTCAGTGAAGAGAGAGTTGTAAC--ATTGTAGAATAGTGC-------AACCCTATGAAAATACTGCCATTCACA---CTTCT---GGTCTTGCACAGAGGCTGTCC--------------------AGCA----------T------------------------------ATAGTAC----TA--GACCATCAAAA--TGGAACTGACACA--GAAGCAAAACAATTACTCGATACTT---TCATCAAAAGAGCAATA-----GTTGTGTTTCCCCAGACTTACACTCACAGTTT-AAAACTATACA------TAATAA----TAACAAA
gi|15 : gcATTAAGAG--TCGATAGATTTAAC--ATTGTAGAATAGTGC-------AACCCTATGTAGATACTGCCATTTACA---C-----------------AGAGGTTGTCCGGCATATAGACAATTAG---AGCA----------T-------------CCAAAAAGAAAGTTGTC--GTTAC----TA--AGTCGTTGAAAGTTAGAACCGTTAC--TGAAGCAAAACAATACCCCGGTACTT---TCATCTCAAAAGCAATATAATAGTCGTGCTTCGTGAGACTTCTGTTGGCAGTTG-AAAAT--------------------------GAATCATGTTA-ATG--ACAAATTGcttt
gi|16 : ACCCTACGCCAATACTGCCATTTACA---CTTCG---AGTCTCGCACAGAGGCTGTCCGGCATATAGTT--TGAG---AGCA----------T-------------T----------GTCGTTATGTTACGGATTA--TGTCTGTGAAAGTAAGAACCGACACACAGAAGCAAAACAATACCTCGGTATTT---ACAACCCAATAGCAATA-----GTCATGTTTTG-GAGACTTAC--------TTA-AAAACTATATA------T----A----TAACGAATCATTTTA-GGGA-AAAAATTGTCACTTTTTATATGcaatgt
gi|17 : AGCTTTCTGAGGACAGTGTAAC----AGAGGCGTGTGGATCTTAATATCAATGTCACAGATTCAGTG--TAGAGAGTTTTAAC--ATTGTAGACTAGTGC-------AACCCTATGAAAATACTGCAATTCACA---CTTCT---GGTCTCGCACAGAGGCTTATCGGCATATAGT-----------ACA------------------------T----------GT-------------ACTA--GACCATCAAAA--TGGAACTGACACA--GAAGCAAAACAATACCTCGATACTT---ta
gi|18 : ---AGCA----------T-------------T----------GTCGTTATGTTACGGATTA--AGTCTGTGAAAGTTAGAACCGACACACAGAAGCAAAACAATACCTCAGTACTT---ATAGCTCAATAGCAATA-----GTCATGTTTCGTGAGACTTGCGTTGGTAGTTT-AAAACTCTACA------T----A----TAACAAATCATTTTA-GGG--AAAAATTGTCACTTTTTATAtc
gi|19 : ACAGTTTTGTGACGACAGGGTAAC----AGAGGCATGTCGATCCTTATTTCAATGTCACGGATTAAGTG--TC----------------TGTAGAATAGTGC-------AACC-TATACAAATACTGCCATTTACA---CTTCG---GATCTCGCACGGAGGCTGTCTGGCATATAGTA--CTAG---ATCA----------T-------------
gi|2 : TTTGTGACGGCAAGGTAAC----AGAGGTGTGTCGATCCTTATTTCAATGTCATGTATTCAATG--TCGATAGTTCCAAC--ATTGCAGAATAGTGC-------AACCCTATGCAAATACTGCCATTTACA---CTTGG---GGTCTTGCACGGAGGCTGTCCGGCATATAATA--CTAG---ATCA----------TCAAAAAGGAAAGCT----------GTCATTACGTTACGGACTA--AGTCGGTGGAAGTTAGTACCG--ACACTGAAGCAAAACAATACCTCGGTACTT---TCATCCAAAAATCAATA-----GTCGTGTTTTGTGAGAC-TCCACTTGCAGTTT-AAAACTATACA------TTATAA----TAACGAATCATGTTA---G--ACAAATTGACACCTTTTATcaacaaggaaagctgtcgtt
gi|20 : cTCACAGGTTTGTGACGACAGGGTAACTAACGGAGGCGTGTCGATCCTTATTTTAATGTCACGGACTCAGTG--TCGATAGTTTTAAC--ATTGTAGAATAGTGC-------AACCCTACGCCAATACTGCCATTTACA---CTTCG---AGTCTCGTAAAGAAGCTGTCCGGCATATAGTT--TT
gi|21 : gTCGTTATGTTACGGATTA--AGT----------TAGAACCAACACTCGGAATCAAAACAATACCTGGATATTTTGTACAACCCAAAAGCAATA-----GTCATGTTTCGTGAGACTTCCGCTGGTAGTTT-AAAACTCTACATAAAATT----A----TAACGAATCATTTTA-GGT--GGGAATTGCCA
gi|22 : TTTGTGACGACAGGATAAC----GGAGGCGCGTCGATCCTTATTTCAATGTC----------------GATCGTTTTAAC--ATTGTAGAATAGTGC-------AACCATATGCAAAAACTGCCATTTACA---CTTCG---GGTCTCGTACCAAGACTGTCCGGCATATGCTA--GTAG---AGC
gi|23 : TTACAGGTTTGTGACGACAGGGTAAC----GGAGGCGTGTCGATCCTTATTTTAATGTCACGGATTCAGTG--TCGATAGTTTTAAC--ATTGTAAAATAGTGC-------AACCCTACGTCAATACTGCCATTTACA---CTTCG---AGTC
gi|24 : TTTTAAC--ATTGCAGAATAGTGC-------AACCCTATGCAAATACTGCCATTTACA---CTTCG---GGTCTCGCACGGAGGCTGTCCGGCGTA
gi|25 : GGTTTGTGAAGACAGGTTACC----GGAGGCGTGTCGATCCTTATTTCAATGTCACGGATTCAATG--TCGATAGTGTTAAC--AATGTAGAATAGTGC-------AACCCTATGCAAAAACTGCTTTTTACA---CTacgtgaaaaaagtcggtcgtgaaaaagtagacttcgtcat
gi|26 : TATTCTTAAC--ATTGCAGAAGAGTAC-------AGCCCTGTGCAAATACT----TTCACGGTCCTTTGGAAGG----GTACAGAGGCTATTTGGTAT
gi|27 : TTTGTGACGACAGGGTAAG----GGAGGCGTTTCGATCCTTGTTTCAATGTCAGGGATTCAGTG--TCGATAGTTTTAACGAATTACAGAtttaatatcaatgataccaaggagaaggaa
gi|28 : gcCAGGTTTATGACGACAGGGTAAC----AGAGGCGTGTCGATCCTTATTTTAATGTCACGGATTCAGTG--TCGATAGTTTTAAC--ATTGTAGAATAGTGggtttatataatatttcacaccat
gi|29 : CAATAGCAATA-----GTCATGATTTGTGAGACTTGCGCTGGTAGTTA-AAAACTATACA------T----A----TAACGAATCATTTTA-GGGA-AAAAATTGTCACT
gi|3 : TCACAGGTTTGTGACGACAGGGTAAC----GGAGGCGTGTCGATCCTTATTTTAATGTCACGGATTCAGTG--TCGATAGTTTTAAC--ACTGTAGAATAGTTC-------AACCCTACGCCATTACTGCCATTTACA---CTTCG---AGTCTCGTACAGAGACTGTCCGGCATATAGTT--TTAG---AGCA----------T-------------T----------TTCGTTATGTTACGGATTA--AGTCGGTGAAAGTTAGAACCGACACACGGAAGCAAAACAATACTTCGGTACTT---GCAACACAATAGCAATA-----GTCATGTTTCGTGAGACTTCCGCTGGTAGTTT-TAAACTCTACA------T----A----TAACGTATCATTTTA-GGG--GAAAATTCTCACTTTTGATACG
gi|30 : AATA-----GTCATGTTTCGTGCGACTTCCGCTGGCAG-TT-AA---TATACATAAT--T----A----TAACAAATCCTTTTA-GGG--ATAAATTGCCAC
gi|31 : ----GGAGGTATGTCGATTACAATTTCAATGTCGCGGA-TAAGTG--TCGATATTCTAAAC--AGTGCAGAATAG
gi|32 : TTTGTGACGACAGAGTAAC----AGAGGCGTGTCGATCCTTATTTTAATGTCACGGATTAAGTG--TCGATAGTTTTcattttcaatcta
gi|33 : ACTTCCGCTGGCAGTTT-AAAACTTTACA------T----A----CAATGAAATATTTTA-GGG--ACAAATTGCCAGTTT
gi|34 : ACTATGCA------T----AATAATAACGAACCATTTTA-GGG--ACAAATTGACACTTT
gi|35 : TCACAGCTTTG---CGACATGGTAAC----GAAGGTATGTCGATcctgtgtattatcct
gi|4 : aattgTTACAGGTTTGTGACGACAGGGTTAT----GGAGGCGTGTCGATCCTTATTTTAATGTCACTGATTCAGTG--TCGATAGTTTTAAC--ATCGTAGAATAGTTT-------AACCCTACGCCATTACTGCCATTTACA---CTTCG---AGTCTCGTACAGAGGCTGTCCAGCATATAGTT--AAAG---AGCA----------T-------------T----------GTCGTTATGTTACGGATTA--AGTCGGTGAAAGTTAGAACCGACACAAGGAAGCAAAACAATACCTCGGTACTT---AAAACACAATAGCAATA-----GTCATGTTTCGTGATACTTCCGTTGGTAGTTT-TTAACTCTACA------T----A----TAAAGAATCATTTTAGGGG--AAAAATTGTCACTTTCGATAC
gi|5 : ACATGTTTGTGACGACAGGGTAAC----GGAGGCGTGTTGATCCTTATTTAAATGTCACGGATTCAGTG--TCGATAGTTTTAAC--ATTGTAGAATAGTGC-------AACCCTACGCAAATACTGCCATTTACA---CTTCG---GGTCTCGTACTGAGGCTGTCCGGCATATAGTT--TAAG---AGCA----------T-------------T----------GTAGTTATGTTACGGATTA--AGTCGGTGAAAGTTAGTACCGGCATACCGAAGCAAAACAATACCTCGGTACTT---ACAACCCAAAAGCAATA-----TTCATGTTTCGTGAGACTTCCGCTGGTAGTTT-AAAACTCTTCA------T----A----TAACGAATCATTTTA-GGGGAAAAAACGGCCACTTTTTATA
gi|6 : CACAGGTTGGTGACGACAGGGTAAC----GGAGGCGTGTCGATCCATATTTTAATGTCACAGATTCAGTG--TCAATAGTGTTAAC--ATTGTAGAATAGTGC-------AACCCAACGCAAATACTGCCATTTACA---CTTCA---AGTCTCGTGCAGAGGCTGTCTGGTATATAGTT--TTAG---AGCA----------T-------------T----------GTCGTTATGTTACGGATCA--AGTCCGTGAAAGTTTGAACCGACACATGGGCGTAAAATAATACCTCGGTACTT---ACAACCCAAAAGCAATA-----GTCATGTTTCGTGATACTTCTGCTGGTAGTTT-AAAACTCTACA------T----A----TAACGAATCATTTTA-GAG--AAAAATTGCCACTT
gi|7 : CACAGGTTTGTGACGACAGGGTAAC----GGAGGCATGGCGATCCTTATTTTAATGTCACGTATTCAGTG--TCGATAGCTTTAAC--ATTGTAGAATAGGGC-------AACCCTACGCAAATACTGCCATTTACA---CTTCG---AGTCTCGTACAGAGGCTGTCCGGATTATAGTT--TTAA---AGCA----------T-------------T----------GTCTTTATGTTACGGATTA--AGTCGGTGAAAGTTAGAACTGACATACGGAAGCAAAACAATACCTCGGTACT------AACCCAGTAGCAATA-----GTCATGTTTCGTGAGACTTCCGTTGGTAATTTAAAAACTATACA------T----A----TAACGAATCATTTTA-GGG--AAAAAATGCCA
gi|8 : TCACAGGTTTGTGACGACAGGGTAAC----GGAGGCATGTCGATCCTTTTTTTAAAGGCACGGATTCAGTG--TCGATAGTTTTAAC--ATTGTAGAATAGTGC-------AACCCTACGCCAATACCGCCATTTACA---C-------------GTACAGAGGCTGTCCGGCATATAGTT--TTAG---AGCA----------T-------------T----------GTCGTTATGTTACGGATTA--AGTCTGTGAAAGTTAGAACCGACACACAGAAGCAAAACAATATCTCGGTACTT---ACAACGCAATAGCAAAA-----GTCATGTTTCGTGAGACTTCCGCTGGTAGTTT-AAAACTCTACA------T----A----TAACGAATCATTTTA-GGG--GAAAATTGTCACTTTTTATat
gi|9 : gCACAGGTTTGTGACGACAGGGTAAC----GGAGGCATGGCGATCCTTATTTTAATGTCACGTATTCAGTG--TCGATAGCTTTAAC--ATTGTAGAATAGGGC-------AACCCTACGCAAATACTGCCATTTACA---CTTCG---AGTCTCGTACAGAGGCTGTCCGGATTATAGTT--TTAA---AGCA----------T-------------T----------GTCTTTATGTTACGGATTA--AGTCGGTGAAAGTTAGAACTGACATACGGAAGCAAAACAATACCTCGGTACT------AACCCAGTAGCAATA-----GTCATGTTTCGTGAGACTTCCGTTGGTAATTTAAAAACTATACA------T----A----TAACGAATCATTTTA-GGG--AAAAAATGCCA
Alignments
lowQualScore : 44444444444444444444444444444444444 11111111111
lowQualScore : 3333 22 22 5555555 222 333 7777 333 33333333333333333333333333333333333 22 2 2 33 5555 1 1 55555 4 1 1 55555555555 4444 2 77 0
lowQualScore : .... .. .. ....... ... ... .... ... ................................... .. . . .. .... . . ..... . . . ........... .... . .. .
lowQualScore : 4444 22 11 7777777 999 000 7777 555 99999999999999999999999999999999999 99 2 2 99 4444 8 0 00000 0 9 7 00000000000 2222 2 55 4
consensus : TCACAGGTTTGTGACGACAGGGTAAC----GGAGGCGTGTCGATCCTTATTTCAATGTCACGGATTCAGTG--TCGATAGTTTTAAC--ATTGTAGAATAGTGC-------AACCCTACGCAAATACTGCCATTTACA---CTTCG---GGTCTCGTACAGAGGCTGTCCGGCATATAGTT--TTAG---AGCA----------T-------------T----------GTCGTTATGTTACGGATTA--AGTCGGTGAAAGTTAGAACCGACACACGGAAGCAAAACAATACCTCGGTACTT---ACAACCCAANAGCAATA-----GTCATGTTTCGTGAGACTTCCGCTGGTAGTTT-AAA-ACTNTACA------T----A----TAACGAATCATTTTA-GGG--AAAAATTGCCACTTTTTATACG
Reference ( family-194 ) : TCACAGGTTTGTGACGACAGGGTAAC----GGAGGCGTGTCGATCCTTATTTCAATGTCACGGATTCAGTG--TCGATAGTTTTAAC--ATTGTAGAATAGTGC-------AACCCTACGCAAATACTGCCATTTACA---CTTCG---GGTCTCGTACAGAGGCTGTCCGGCATATAGTT--TTAG---AGCA----------T-------------T----------GTCGTTATGTTACGGATTA--AGTCGGTGAAAGTTAGAACCGACACACGGAAGCAAAACAATACCTCGGTACTT---ACAACCCAANAGCAATA-----GTCATGTTTCGTGAGACTTCCGCTGGTAGTTT-AAA-ACTNTACA------T----A----TAACGAATCATTTTA-GGG--AAAAATTGCCACTTTTTATACG
gi|1 : TTTGTGACGGCAAGGTAAC----AGAGGTGTGTCGATCCTTATTTCAATGTCATGTATTCAATG--TCGATAGTTCCAAC--ATTGCAGAATAGTGC-------AACCCTATGCAAATACTGCCATTTACA---CTTGG---GGTCTTGCACGGAGGCTGTCCGGCATATAATA--CTAG---ATCA----------TCAAAAAGGAAAGCT----------GTCATTACGTTACGGACTA--AGTCGGTGGAAGTTAGTACCG--ACACTGAAGCAAAACAATACCTCGGTACTT---TCATCCAAAAATCAATA-----GTCGTGTTTTGTGAGAC-TCCACTTGCAGTTT-AAA-ACTATACA------TTATAA----TAACGAATCATGTTA---G--ACAAATTGACACCTTTTAT
gi|10 : cTCACAGGTTTGTGACGACAGGGTAAC----GGAGGCGTGTCCATCCATATTTTAATGTCACGGATTCAGTG--TCGATAATTTTTAC--ATTGTAGAATAGTGC-------AACCCTACGCATATACTGCCATTTACA---CTTCA---AGTCTCGTACAGAGGCTGTCCGGTATATAGTT--TTAG---AGCA----------T-------------T----------GTGGTTATGTTACGGATCA--AGTCCGTGAAAGTTAGAACCGACACACGGAAGCAAAACAATACCTCGGTACTT---ACAACCCAAAAGCA--A-----GTCATGTTTTGTGATACTTCCGTTACTAGATG-AAACACCTTA
gi|11 : gCACAGGTTTGTGACGACAGGGTAAC----GGAGAAGTGTCGATCCCTATGTTAATGTCACGGATTCAGTG--TCAATAGTTTTAAC--ATTGTAGAATAGTGT-------AACCCTACGCCAATACTGCCATTTACA---CTTCG---AGTCTCGTACAGAGGCTGTCCGGCAT-------------------------------------------T----------GTCGTTATGTTATGGATTA--TGTATGTGAAAGTTAAAACCGACTCACAGAAGCAAAACAATACCTCGGTACTT---ACAACCAAATAGCAATA-----GTCATGTTTCGTGAGACTTGTGCTGGTAGTTT-AAA-ACTCTACA------T----A----TAACGAATCATTTTA-GGA--AAAAATTGTCACTatcaaattgaatagatgca
gi|12 : TTTGTGACGACAGGTTTAC------AGGCGTGTCGATCCTTATTTCAATGTCACAGATTCAGTG--TAGAGAGTTTTAAC--ATTGTAGAATAGTGCACTTTTTAATCCTATGAAAATACTGACATTTACA---CTTCT---GGTCTTGCATAGAGGCTG-CCGGCATATAGTA--GTAGATCAGCAAAAAGGATAGC-------------T----------GTCGTTACGTTACAGACTAAGAGTCGGT---------------------GAAGCAAAACAA--------TACTT---ACA--TAAAAAGCAATG-----GTTGTGTTCCGTGAGACTTCCGCTGGCAGTTT-AAA-ACTATACA------T----A----
gi|13 : gcAGCTCTGTGACGACAGGGTAAC----GGAGGCACGTCGATCCTTATTTCAATGTCACAGATTAAGTG--TCGATGTTTTTATC--ATTGTAGAATAGTGC-------TACACTATGCAAATACTGCGATTTACA---CT--G---GGATTTTTACAGAAATTGTCCAGCATTTAATA--TTAA---AACA----------TCCAAAAAGAAAGGT----------GTCGTTATGTTACGGACTA--AGTCCGTGAAAGCTATTACCG--ACACTGAAGCAAAACAATACCTCGGTACTT---TCATCCCAAAAGCAATA-----GTCATGTTTCATGCAACTTC
gi|14 : TTTGTGACGACAGGG---C----AGAG-CGTGTCGATCCTTCTTTCAATGTCAGAGATTCAGTGAAGAGAGAGTTGTAAC--ATTGTAGAATAGTGC-------AACCCTATGAAAATACTGCCATTCACA---CTTCT---GGTCTTGCACAGAGGCTGTCC--------------------AGCA----------T------------------------------ATAGTAC----TA--GACCATCAAAA--TGGAACTGACACA--GAAGCAAAACAATTACTCGATACTT---TCATCAAAAGAGCAATA-----GTTGTGTTTCCCCAGACTTACACTCACAGTTT-AAA-ACTATACA------TAATAA----TAACAAA
gi|15 : gcATTAAGAG--TCGATAGATTTAAC--ATTGTAGAATAGTGC-------AACCCTATGTAGATACTGCCATTTACA---C-----------------AGAGGTTGTCCGGCATATAGACAATTAG---AGCA----------T-------------CCAAAAAGAAAGTTGTC--GTTAC----TA--AGTCGTTGAAAGTTAGAACCGTTAC--TGAAGCAAAACAATACCCCGGTACTT---TCATCTCAAAAGCAATATAATAGTCGTGCTTCGTGAGACTTCTGTTGGCAGTTG-AAA-AT--------------------------GAATCATGTTA-ATG--ACAAATTGCcttt
gi|16 : ACCCTACGCCAATACTGCCATTTACA---CTTCG---AGTCTCGCACAGAGGCTGTCCGGCATATAGTT--TGAG---AGCA----------T-------------T----------GTCGTTATGTTACGGATTA--TGTCTGTGAAAGTAAGAACCGACACACAGAAGCAAAACAATACCTCGGTATTT---ACAACCCAATAGCAATA-----GTCATGTTTTG-GAGACTTAC--------TTA-AAA-ACTATATA------T----A----TAACGAATCATTTTA-GGGA-AAAAATTGTCACTTTTTATATGaatgt
gi|17 : AGCTTTCTGAGGACAGTGTAAC----AGAGGCGTGTGGATCTTAATATCAATGTCACAGATTCAGTG--TAGAGAGTTTTAAC--ATTGTAGACTAGTGC-------AACCCTATGAAAATACTGCAATTCACA---CTTCT---GGTCTCGCACAGAGGCTTATCGGCATATAGT-----------ACA------------------------T----------GT-------------ACTA--GACCATCAAAA--TGGAACTGACACA--GAAGCAAAACAATACCTCGATACTT---ta
gi|18 : ---AGCA----------T-------------T----------GTCGTTATGTTACGGATTA--AGTCTGTGAAAGTTAGAACCGACACACAGAAGCAAAACAATACCTCAGTACTT---ATAGCTCAATAGCAATA-----GTCATGTTTCGTGAGACTTGCGTTGGTAGTTT-AAA-ACTCTACA------T----A----TAACAAATCATTTTA-GGG--AAAAATTGTCACTTTTTATAtc
gi|19 : ACAGTTTTGTGACGACAGGGTAAC----AGAGGCATGTCGATCCTTATTTCAATGTCACGGATTAAGTG--TC----------------TGTAGAATAGTGC-------AACC-TATACAAATACTGCCATTTACA---CTTCG---GATCTCGCACGGAGGCTGTCTGGCATATAGTA--CTAG---ATCA----------T-------------
gi|2 : TTTGTGACGGCAAGGTAAC----AGAGGTGTGTCGATCCTTATTTCAATGTCATGTATTCAATG--TCGATAGTTCCAAC--ATTGCAGAATAGTGC-------AACCCTATGCAAATACTGCCATTTACA---CTTGG---GGTCTTGCACGGAGGCTGTCCGGCATATAATA--CTAG---ATCA----------TCAAAAAGGAAAGCT----------GTCATTACGTTACGGACTA--AGTCGGTGGAAGTTAGTACCG--ACACTGAAGCAAAACAATACCTCGGTACTT---TCATCCAAAAATCAATA-----GTCGTGTTTTGTGAGAC-TCCACTTGCAGTTT-AAA-ACTATACA------TTATAA----TAACGAATCATGTTA---G--ACAAATTGACACCTTTTATcaacaaggaaagctgtcgtt
gi|20 : cTCACAGGTTTGTGACGACAGGGTAACTAACGGAGGCGTGTCGATCCTTATTTTAATGTCACGGACTCAGTG--TCGATAGTTTTAAC--ATTGTAGAATAGTGC-------AACCCTACGCCAATACTGCCATTTACA---CTTCG---AGTCTCGTAAAGAAGCTGTCCGGCATATAGTT--TT
gi|21 : gTCGTTATGTTACGGATTA--AGT----------TAGAACCAACACTCGGAATCAAAACAATACCTGGATATTTTGTACAACCCAAAAGCAATA-----GTCATGTTTCGTGAGACTTCCGCTGGTAGTTT-AAA-ACTCTACATAAAATT----A----TAACGAATCATTTTA-GGT--GGGAATTGCCA
gi|22 : TTTGTGACGACAGGATAAC----GGAGGCGCGTCGATCCTTATTTCAATGTC----------------GATCGTTTTAAC--ATTGTAGAATAGTGC-------AACCATATGCAAAAACTGCCATTTACA---CTTCG---GGTCTCGTACCAAGACTGTCCGGCATATGCTA--GTAG---AGC
gi|23 : TTACAGGTTTGTGACGACAGGGTAAC----GGAGGCGTGTCGATCCTTATTTTAATGTCACGGATTCAGTG--TCGATAGTTTTAAC--ATTGTAAAATAGTGC-------AACCCTACGTCAATACTGCCATTTACA---CTTCG---AGTC
gi|24 : TTTTAAC--ATTGCAGAATAGTGC-------AACCCTATGCAAATACTGCCATTTACA---CTTCG---GGTCTCGCACGGAGGCTGTCCGGCGTA
gi|25 : GGTTTGTGAAGACAGGTTACC----GGAGGCGTGTCGATCCTTATTTCAATGTCACGGATTCAATG--TCGATAGTGTTAAC--AATGTAGAATAGTGC-------AACCCTATGCAAAAACTGCTTTTTACA---CTacgtgaaaaaagtcggtcgtgaaaaagtagacttcgtcat
gi|26 : TATTCTTAAC--ATTGCAGAAGAGTAC-------AGCCCTGTGCAAATACT----TTCACGGTCCTTTGGAAGG----GTACAGAGGCTATTTGGTAT
gi|27 : TTTGTGACGACAGGGTAAG----GGAGGCGTTTCGATCCTTGTTTCAATGTCAGGGATTCAGTG--TCGATAGTTTTAACGAATTACAGAtttaatatcaatgataccaaggagaaggaa
gi|28 : gcCAGGTTTATGACGACAGGGTAAC----AGAGGCGTGTCGATCCTTATTTTAATGTCACGGATTCAGTG--TCGATAGTTTTAAC--ATTGTAGAATAGTGggtttatataatatttcacaccat
gi|29 : CAATAGCAATA-----GTCATGATTTGTGAGACTTGCGCTGGTAGTTA-AAA-ACTATACA------T----A----TAACGAATCATTTTA-GGGA-AAAAATTGTCACT
gi|3 : TCACAGGTTTGTGACGACAGGGTAAC----GGAGGCGTGTCGATCCTTATTTTAATGTCACGGATTCAGTG--TCGATAGTTTTAAC--ACTGTAGAATAGTTC-------AACCCTACGCCATTACTGCCATTTACA---CTTCG---AGTCTCGTACAGAGACTGTCCGGCATATAGTT--TTAG---AGCA----------T-------------T----------TTCGTTATGTTACGGATTA--AGTCGGTGAAAGTTAGAACCGACACACGGAAGCAAAACAATACTTCGGTACTT---GCAACACAATAGCAATA-----GTCATGTTTCGTGAGACTTCCGCTGGTAGTTT-TAA-ACTCTACA------T----A----TAACGTATCATTTTA-GGG--GAAAATTCTCACTTTTGATACG
gi|30 : AATA-----GTCATGTTTCGTGCGACTTCCGCTGGCAG-TT-AA----TATACATAAT--T----A----TAACAAATCCTTTTA-GGG--ATAAATTGCCAC
gi|31 : ----GGAGGTATGTCGATTACAATTTCAATGTCGCGGA-TAAGTG--TCGATATTCTAAAC--AGTGCAGAATAG
gi|32 : TTTGTGACGACAGAGTAAC----AGAGGCGTGTCGATCCTTATTTTAATGTCACGGATTAAGTG--TCGATAGTTTTcattttcaatcta
gi|33 : ACTTCCGCTGGCAGTTT-AAA-ACTTTACA------T----A----CAATGAAATATTTTA-GGG--ACAAATTGCCAGTTT
gi|34 : -ACTATGCA------T----AATAATAACGAACCATTTTA-GGG--ACAAATTGACACTTT
gi|35 : TCACAGCTTTG---CGACATGGTAAC----GAAGGTATGTCGATcctgtgtattatcct
gi|4 : aattgTTACAGGTTTGTGACGACAGGGTTAT----GGAGGCGTGTCGATCCTTATTTTAATGTCACTGATTCAGTG--TCGATAGTTTTAAC--ATCGTAGAATAGTTT-------AACCCTACGCCATTACTGCCATTTACA---CTTCG---AGTCTCGTACAGAGGCTGTCCAGCATATAGTT--AAAG---AGCA----------T-------------T----------GTCGTTATGTTACGGATTA--AGTCGGTGAAAGTTAGAACCGACACAAGGAAGCAAAACAATACCTCGGTACTT---AAAACACAATAGCAATA-----GTCATGTTTCGTGATACTTCCGTTGGTAGTTT-TTA-ACTCTACA------T----A----TAAAGAATCATTTTAGGGG--AAAAATTGTCACTTTCGATAC
gi|5 : ACATGTTTGTGACGACAGGGTAAC----GGAGGCGTGTTGATCCTTATTTAAATGTCACGGATTCAGTG--TCGATAGTTTTAAC--ATTGTAGAATAGTGC-------AACCCTACGCAAATACTGCCATTTACA---CTTCG---GGTCTCGTACTGAGGCTGTCCGGCATATAGTT--TAAG---AGCA----------T-------------T----------GTAGTTATGTTACGGATTA--AGTCGGTGAAAGTTAGTACCGGCATACCGAAGCAAAACAATACCTCGGTACTT---ACAACCCAAAAGCAATA-----TTCATGTTTCGTGAGACTTCCGCTGGTAGTTT-AAA-ACTCTTCA------T----A----TAACGAATCATTTTA-GGGGAAAAAACGGCCACTTTTTATA
gi|6 : CACAGGTTGGTGACGACAGGGTAAC----GGAGGCGTGTCGATCCATATTTTAATGTCACAGATTCAGTG--TCAATAGTGTTAAC--ATTGTAGAATAGTGC-------AACCCAACGCAAATACTGCCATTTACA---CTTCA---AGTCTCGTGCAGAGGCTGTCTGGTATATAGTT--TTAG---AGCA----------T-------------T----------GTCGTTATGTTACGGATCA--AGTCCGTGAAAGTTTGAACCGACACATGGGCGTAAAATAATACCTCGGTACTT---ACAACCCAAAAGCAATA-----GTCATGTTTCGTGATACTTCTGCTGGTAGTTT-AAA-ACTCTACA------T----A----TAACGAATCATTTTA-GAG--AAAAATTGCCACTT
gi|7 : CACAGGTTTGTGACGACAGGGTAAC----GGAGGCATGGCGATCCTTATTTTAATGTCACGTATTCAGTG--TCGATAGCTTTAAC--ATTGTAGAATAGGGC-------AACCCTACGCAAATACTGCCATTTACA---CTTCG---AGTCTCGTACAGAGGCTGTCCGGATTATAGTT--TTAA---AGCA----------T-------------T----------GTCTTTATGTTACGGATTA--AGTCGGTGAAAGTTAGAACTGACATACGGAAGCAAAACAATACCTCGGTACT------AACCCAGTAGCAATA-----GTCATGTTTCGTGAGACTTCCGTTGGTAATTTAAAA-ACTATACA------T----A----TAACGAATCATTTTA-GGG--AAAAAATGCCA
gi|8 : TCACAGGTTTGTGACGACAGGGTAAC----GGAGGCATGTCGATCCTTTTTTTAAAGGCACGGATTCAGTG--TCGATAGTTTTAAC--ATTGTAGAATAGTGC-------AACCCTACGCCAATACCGCCATTTACA---C-------------GTACAGAGGCTGTCCGGCATATAGTT--TTAG---AGCA----------T-------------T----------GTCGTTATGTTACGGATTA--AGTCTGTGAAAGTTAGAACCGACACACAGAAGCAAAACAATATCTCGGTACTT---ACAACGCAATAGCAAAA-----GTCATGTTTCGTGAGACTTCCGCTGGTAGTTT-AAA-ACTCTACA------T----A----TAACGAATCATTTTA-GGG--GAAAATTGTCACTTTTTATat
gi|9 : gCACAGGTTTGTGACGACAGGGTAAC----GGAGGCATGGCGATCCTTATTTTAATGTCACGTATTCAGTG--TCGATAGCTTTAAC--ATTGTAGAATAGGGC-------AACCCTACGCAAATACTGCCATTTACA---CTTCG---AGTCTCGTACAGAGGCTGTCCGGATTATAGTT--TTAA---AGCA----------T-------------T----------GTCTTTATGTTACGGATTA--AGTCGGTGAAAGTTAGAACTGACATACGGAAGCAAAACAATACCTCGGTACT------AACCCAGTAGCAATA-----GTCATGTTTCGTGAGACTTCCGTTGGTAATTTAAAA-ACTATACA------T----A----TAACGAATCATTTTA-GGG--AAAAAATGCCA
Alignments
lowQualScore : 44444444444444444444444444444444444 11111111111
lowQualScore : 3333 22 22 5555555 222 333 7777 333 33333333333333333333333333333333333 22 2 2 33 5555 1 1 55555 4 1 1 55555555555 4444 2 77 0
lowQualScore : .... .. .. ....... ... ... .... ... ................................... .. . . .. .... . . ..... . . . ........... .... . .. .
lowQualScore : 4444 22 11 7777777 999 000 7777 555 99999999999999999999999999999999999 99 2 2 99 4444 8 0 00000 0 9 7 00000000000 2222 2 55 4
consensus : TCACAGGTTTGTGACGACAGGGTAAC----GGAGGCGTGTCGATCCTTATTTCAATGTCACGGATTCAGTG--TCGATAGTTTTAAC--ATTGTAGAATAGTGC-------AACCCTACGCAAATACTGCCATTTACA---CTTCG---GGTCTCGTACAGAGGCTGTCCGGCATATAGTT--TTAG---AGCA----------T-------------T----------GTCGTTATGTTACGGATTA--AGTCGGTGAAAGTTAGAACCGACACACGGAAGCAAAACAATACCTCGGTACTT---ACAACCCAANAGCAATA-----GTCATGTTTCGTGAGACTTCCGCTGGTAGTTT-AAA-ACTNTACA------T----A----TAACGAATCATTTTA-GGG--AAAAATTGCCACTTTTTATACG
Reference ( family-194 ) : TCACAGGTTTGTGACGACAGGGTAAC----GGAGGCGTGTCGATCCTTATTTCAATGTCACGGATTCAGTG--TCGATAGTTTTAAC--ATTGTAGAATAGTGC-------AACCCTACGCAAATACTGCCATTTACA---CTTCG---GGTCTCGTACAGAGGCTGTCCGGCATATAGTT--TTAG---AGCA----------T-------------T----------GTCGTTATGTTACGGATTA--AGTCGGTGAAAGTTAGAACCGACACACGGAAGCAAAACAATACCTCGGTACTT---ACAACCCAANAGCAATA-----GTCATGTTTCGTGAGACTTCCGCTGGTAGTTT-AAA-ACTNTACA------T----A----TAACGAATCATTTTA-GGG--AAAAATTGCCACTTTTTATACG
gi|1 : TTTGTGACGGCAAGGTAAC----AGAGGTGTGTCGATCCTTATTTCAATGTCATGTATTCAATG--TCGATAGTTCCAAC--ATTGCAGAATAGTGC-------AACCCTATGCAAATACTGCCATTTACA---CTTGG---GGTCTTGCACGGAGGCTGTCCGGCATATAATA--CTAG---ATCA----------TCAAAAAGGAAAGCT----------GTCATTACGTTACGGACTA--AGTCGGTGGAAGTTAGTACCG--ACACTGAAGCAAAACAATACCTCGGTACTT---TCATCCAAAAATCAATA-----GTCGTGTTTTGTGAGAC-TCCACTTGCAGTTT-AAA-ACTATACA------TTATAA----TAACGAATCATGTTA---G--ACAAATTGACACCTTTTAT
gi|10 : cTCACAGGTTTGTGACGACAGGGTAAC----GGAGGCGTGTCCATCCATATTTTAATGTCACGGATTCAGTG--TCGATAATTTTTAC--ATTGTAGAATAGTGC-------AACCCTACGCATATACTGCCATTTACA---CTTCA---AGTCTCGTACAGAGGCTGTCCGGTATATAGTT--TTAG---AGCA----------T-------------T----------GTGGTTATGTTACGGATCA--AGTCCGTGAAAGTTAGAACCGACACACGGAAGCAAAACAATACCTCGGTACTT---ACAACCCAAAAGCA--A-----GTCATGTTTTGTGATACTTCCGTTACTAGATG-AAACACCTTA
gi|11 : gCACAGGTTTGTGACGACAGGGTAAC----GGAGAAGTGTCGATCCCTATGTTAATGTCACGGATTCAGTG--TCAATAGTTTTAAC--ATTGTAGAATAGTGT-------AACCCTACGCCAATACTGCCATTTACA---CTTCG---AGTCTCGTACAGAGGCTGTCCGGCAT-------------------------------------------T----------GTCGTTATGTTATGGATTA--TGTATGTGAAAGTTAAAACCGACTCACAGAAGCAAAACAATACCTCGGTACTT---ACAACCAAATAGCAATA-----GTCATGTTTCGTGAGACTTGTGCTGGTAGTTT-AAA-ACTCTACA------T----A----TAACGAATCATTTTA-GGA--AAAAATTGTCACTatcaaattgaatagatgca
gi|12 : TTTGTGACGACAGGTTTAC------AGGCGTGTCGATCCTTATTTCAATGTCACAGATTCAGTG--TAGAGAGTTTTAAC--ATTGTAGAATAGTGCACTTTTTAATCCTATGAAAATACTGACATTTACA---CTTCT---GGTCTTGCATAGAGGCTG-CCGGCATATAGTA--GTAGATCAGCAAAAAGGATAGC-------------T----------GTCGTTACGTTACAGACTAAGAGTCGGT---------------------GAAGCAAAACAA--------TACTT---ACA--TAAAAAGCAATG-----GTTGTGTTCCGTGAGACTTCCGCTGGCAGTTT-AAA-ACTATACA------T----A----
gi|13 : gcAGCTCTGTGACGACAGGGTAAC----GGAGGCACGTCGATCCTTATTTCAATGTCACAGATTAAGTG--TCGATGTTTTTATC--ATTGTAGAATAGTGC-------TACACTATGCAAATACTGCGATTTACA---CT--G---GGATTTTTACAGAAATTGTCCAGCATTTAATA--TTAA---AACA----------TCCAAAAAGAAAGGT----------GTCGTTATGTTACGGACTA--AGTCCGTGAAAGCTATTACCG--ACACTGAAGCAAAACAATACCTCGGTACTT---TCATCCCAAAAGCAATA-----GTCATGTTTCATGCAACTTC
gi|14 : TTTGTGACGACAGGG---C----AGAG-CGTGTCGATCCTTCTTTCAATGTCAGAGATTCAGTGAAGAGAGAGTTGTAAC--ATTGTAGAATAGTGC-------AACCCTATGAAAATACTGCCATTCACA---CTTCT---GGTCTTGCACAGAGGCTGTCC--------------------AGCA----------T------------------------------ATAGTAC----TA--GACCATCAAAA--TGGAACTGACACA--GAAGCAAAACAATTACTCGATACTT---TCATCAAAAGAGCAATA-----GTTGTGTTTCCCCAGACTTACACTCACAGTTT-AAA-ACTATACA------TAATAA----TAACAAA
gi|15 : gcATTAAGAG--TCGATAGATTTAAC--ATTGTAGAATAGTGC-------AACCCTATGTAGATACTGCCATTTACA---C-----------------AGAGGTTGTCCGGCATATAGACAATTAG---AGCA----------T-------------CCAAAAAGAAAGTTGTC--GTTAC----TA--AGTCGTTGAAAGTTAGAACCGTTAC--TGAAGCAAAACAATACCCCGGTACTT---TCATCTCAAAAGCAATATAATAGTCGTGCTTCGTGAGACTTCTGTTGGCAGTTG-AAA-AT--------------------------GAATCATGTTA-ATG--ACAAATTGCcttt
gi|16 : ACCCTACGCCAATACTGCCATTTACA---CTTCG---AGTCTCGCACAGAGGCTGTCCGGCATATAGTT--TGAG---AGCA----------T-------------T----------GTCGTTATGTTACGGATTA--TGTCTGTGAAAGTAAGAACCGACACACAGAAGCAAAACAATACCTCGGTATTT---ACAACCCAATAGCAATA-----GTCATGTTTTG-GAGACTTAC--------TTA-AAA-ACTATATA------T----A----TAACGAATCATTTTA-GGGA-AAAAATTGTCACTTTTTATATGaatgt
gi|17 : AGCTTTCTGAGGACAGTGTAAC----AGAGGCGTGTGGATCTTAATATCAATGTCACAGATTCAGTG--TAGAGAGTTTTAAC--ATTGTAGACTAGTGC-------AACCCTATGAAAATACTGCAATTCACA---CTTCT---GGTCTCGCACAGAGGCTTATCGGCATATAGT-----------ACA------------------------T----------GT-------------ACTA--GACCATCAAAA--TGGAACTGACACA--GAAGCAAAACAATACCTCGATACTT---ta
gi|18 : ---AGCA----------T-------------T----------GTCGTTATGTTACGGATTA--AGTCTGTGAAAGTTAGAACCGACACACAGAAGCAAAACAATACCTCAGTACTT---ATAGCTCAATAGCAATA-----GTCATGTTTCGTGAGACTTGCGTTGGTAGTTT-AAA-ACTCTACA------T----A----TAACAAATCATTTTA-GGG--AAAAATTGTCACTTTTTATAtc
gi|19 : ACAGTTTTGTGACGACAGGGTAAC----AGAGGCATGTCGATCCTTATTTCAATGTCACGGATTAAGTG--TC----------------TGTAGAATAGTGC-------AACC-TATACAAATACTGCCATTTACA---CTTCG---GATCTCGCACGGAGGCTGTCTGGCATATAGTA--CTAG---ATCA----------T-------------
gi|2 : TTTGTGACGGCAAGGTAAC----AGAGGTGTGTCGATCCTTATTTCAATGTCATGTATTCAATG--TCGATAGTTCCAAC--ATTGCAGAATAGTGC-------AACCCTATGCAAATACTGCCATTTACA---CTTGG---GGTCTTGCACGGAGGCTGTCCGGCATATAATA--CTAG---ATCA----------TCAAAAAGGAAAGCT----------GTCATTACGTTACGGACTA--AGTCGGTGGAAGTTAGTACCG--ACACTGAAGCAAAACAATACCTCGGTACTT---TCATCCAAAAATCAATA-----GTCGTGTTTTGTGAGAC-TCCACTTGCAGTTT-AAA-ACTATACA------TTATAA----TAACGAATCATGTTA---G--ACAAATTGACACCTTTTATcaacaaggaaagctgtcgtt
gi|20 : cTCACAGGTTTGTGACGACAGGGTAACTAACGGAGGCGTGTCGATCCTTATTTTAATGTCACGGACTCAGTG--TCGATAGTTTTAAC--ATTGTAGAATAGTGC-------AACCCTACGCCAATACTGCCATTTACA---CTTCG---AGTCTCGTAAAGAAGCTGTCCGGCATATAGTT--TT
gi|21 : gTCGTTATGTTACGGATTA--AGT----------TAGAACCAACACTCGGAATCAAAACAATACCTGGATATTTTGTACAACCCAAAAGCAATA-----GTCATGTTTCGTGAGACTTCCGCTGGTAGTTT-AAA-ACTCTACATAAAATT----A----TAACGAATCATTTTA-GGT--GGGAATTGCCA
gi|22 : TTTGTGACGACAGGATAAC----GGAGGCGCGTCGATCCTTATTTCAATGTC----------------GATCGTTTTAAC--ATTGTAGAATAGTGC-------AACCATATGCAAAAACTGCCATTTACA---CTTCG---GGTCTCGTACCAAGACTGTCCGGCATATGCTA--GTAG---AGC
gi|23 : TTACAGGTTTGTGACGACAGGGTAAC----GGAGGCGTGTCGATCCTTATTTTAATGTCACGGATTCAGTG--TCGATAGTTTTAAC--ATTGTAAAATAGTGC-------AACCCTACGTCAATACTGCCATTTACA---CTTCG---AGTC
gi|24 : TTTTAAC--ATTGCAGAATAGTGC-------AACCCTATGCAAATACTGCCATTTACA---CTTCG---GGTCTCGCACGGAGGCTGTCCGGCGTA
gi|25 : GGTTTGTGAAGACAGGTTACC----GGAGGCGTGTCGATCCTTATTTCAATGTCACGGATTCAATG--TCGATAGTGTTAAC--AATGTAGAATAGTGC-------AACCCTATGCAAAAACTGCTTTTTACA---CTacgtgaaaaaagtcggtcgtgaaaaagtagacttcgtcat
gi|26 : TATTCTTAAC--ATTGCAGAAGAGTAC-------AGCCCTGTGCAAATACT----TTCACGGTCCTTTGGAAGG----GTACAGAGGCTATTTGGTAT
gi|27 : TTTGTGACGACAGGGTAAG----GGAGGCGTTTCGATCCTTGTTTCAATGTCAGGGATTCAGTG--TCGATAGTTTTAACGAATTACAGAtttaatatcaatgataccaaggagaaggaa
gi|28 : gcCAGGTTTATGACGACAGGGTAAC----AGAGGCGTGTCGATCCTTATTTTAATGTCACGGATTCAGTG--TCGATAGTTTTAAC--ATTGTAGAATAGTGggtttatataatatttcacaccat
gi|29 : CAATAGCAATA-----GTCATGATTTGTGAGACTTGCGCTGGTAGTTA-AAA-ACTATACA------T----A----TAACGAATCATTTTA-GGGA-AAAAATTGTCACT
gi|3 : TCACAGGTTTGTGACGACAGGGTAAC----GGAGGCGTGTCGATCCTTATTTTAATGTCACGGATTCAGTG--TCGATAGTTTTAAC--ACTGTAGAATAGTTC-------AACCCTACGCCATTACTGCCATTTACA---CTTCG---AGTCTCGTACAGAGACTGTCCGGCATATAGTT--TTAG---AGCA----------T-------------T----------TTCGTTATGTTACGGATTA--AGTCGGTGAAAGTTAGAACCGACACACGGAAGCAAAACAATACTTCGGTACTT---GCAACACAATAGCAATA-----GTCATGTTTCGTGAGACTTCCGCTGGTAGTTT-TAA-ACTCTACA------T----A----TAACGTATCATTTTA-GGG--GAAAATTCTCACTTTTGATACG
gi|30 : AATA-----GTCATGTTTCGTGCGACTTCCGCTGGCAG-TT-AA----TATACATAAT--T----A----TAACAAATCCTTTTA-GGG--ATAAATTGCCAC
gi|31 : ----GGAGGTATGTCGATTACAATTTCAATGTCGCGGA-TAAGTG--TCGATATTCTAAAC--AGTGCAGAATAG
gi|32 : TTTGTGACGACAGAGTAAC----AGAGGCGTGTCGATCCTTATTTTAATGTCACGGATTAAGTG--TCGATAGTTTTcattttcaatcta
gi|33 : ACTTCCGCTGGCAGTTT-AAA-ACTTTACA------T----A----CAATGAAATATTTTA-GGG--ACAAATTGCCAGTTT
gi|34 : -ACTATGCA------T----AATAATAACGAACCATTTTA-GGG--ACAAATTGACACTTT
gi|35 : TCACAGCTTTG---CGACATGGTAAC----GAAGGTATGTCGATcctgtgtattatcct
gi|4 : aattgTTACAGGTTTGTGACGACAGGGTTAT----GGAGGCGTGTCGATCCTTATTTTAATGTCACTGATTCAGTG--TCGATAGTTTTAAC--ATCGTAGAATAGTTT-------AACCCTACGCCATTACTGCCATTTACA---CTTCG---AGTCTCGTACAGAGGCTGTCCAGCATATAGTT--AAAG---AGCA----------T-------------T----------GTCGTTATGTTACGGATTA--AGTCGGTGAAAGTTAGAACCGACACAAGGAAGCAAAACAATACCTCGGTACTT---AAAACACAATAGCAATA-----GTCATGTTTCGTGATACTTCCGTTGGTAGTTT-TTA-ACTCTACA------T----A----TAAAGAATCATTTTAGGGG--AAAAATTGTCACTTTCGATAC
gi|5 : ACATGTTTGTGACGACAGGGTAAC----GGAGGCGTGTTGATCCTTATTTAAATGTCACGGATTCAGTG--TCGATAGTTTTAAC--ATTGTAGAATAGTGC-------AACCCTACGCAAATACTGCCATTTACA---CTTCG---GGTCTCGTACTGAGGCTGTCCGGCATATAGTT--TAAG---AGCA----------T-------------T----------GTAGTTATGTTACGGATTA--AGTCGGTGAAAGTTAGTACCGGCATACCGAAGCAAAACAATACCTCGGTACTT---ACAACCCAAAAGCAATA-----TTCATGTTTCGTGAGACTTCCGCTGGTAGTTT-AAA-ACTCTTCA------T----A----TAACGAATCATTTTA-GGGGAAAAAACGGCCACTTTTTATA
gi|6 : CACAGGTTGGTGACGACAGGGTAAC----GGAGGCGTGTCGATCCATATTTTAATGTCACAGATTCAGTG--TCAATAGTGTTAAC--ATTGTAGAATAGTGC-------AACCCAACGCAAATACTGCCATTTACA---CTTCA---AGTCTCGTGCAGAGGCTGTCTGGTATATAGTT--TTAG---AGCA----------T-------------T----------GTCGTTATGTTACGGATCA--AGTCCGTGAAAGTTTGAACCGACACATGGGCGTAAAATAATACCTCGGTACTT---ACAACCCAAAAGCAATA-----GTCATGTTTCGTGATACTTCTGCTGGTAGTTT-AAA-ACTCTACA------T----A----TAACGAATCATTTTA-GAG--AAAAATTGCCACTT
gi|7 : CACAGGTTTGTGACGACAGGGTAAC----GGAGGCATGGCGATCCTTATTTTAATGTCACGTATTCAGTG--TCGATAGCTTTAAC--ATTGTAGAATAGGGC-------AACCCTACGCAAATACTGCCATTTACA---CTTCG---AGTCTCGTACAGAGGCTGTCCGGATTATAGTT--TTAA---AGCA----------T-------------T----------GTCTTTATGTTACGGATTA--AGTCGGTGAAAGTTAGAACTGACATACGGAAGCAAAACAATACCTCGGTACT------AACCCAGTAGCAATA-----GTCATGTTTCGTGAGACTTCCGTTGGTAATTTAAAA-ACTATACA------T----A----TAACGAATCATTTTA-GGG--AAAAAATGCCA
gi|8 : TCACAGGTTTGTGACGACAGGGTAAC----GGAGGCATGTCGATCCTTTTTTTAAAGGCACGGATTCAGTG--TCGATAGTTTTAAC--ATTGTAGAATAGTGC-------AACCCTACGCCAATACCGCCATTTACA---C-------------GTACAGAGGCTGTCCGGCATATAGTT--TTAG---AGCA----------T-------------T----------GTCGTTATGTTACGGATTA--AGTCTGTGAAAGTTAGAACCGACACACAGAAGCAAAACAATATCTCGGTACTT---ACAACGCAATAGCAAAA-----GTCATGTTTCGTGAGACTTCCGCTGGTAGTTT-AAA-ACTCTACA------T----A----TAACGAATCATTTTA-GGG--GAAAATTGTCACTTTTTATat
gi|9 : gCACAGGTTTGTGACGACAGGGTAAC----GGAGGCATGGCGATCCTTATTTTAATGTCACGTATTCAGTG--TCGATAGCTTTAAC--ATTGTAGAATAGGGC-------AACCCTACGCAAATACTGCCATTTACA---CTTCG---AGTCTCGTACAGAGGCTGTCCGGATTATAGTT--TTAA---AGCA----------T-------------T----------GTCTTTATGTTACGGATTA--AGTCGGTGAAAGTTAGAACTGACATACGGAAGCAAAACAATACCTCGGTACT------AACCCAGTAGCAATA-----GTCATGTTTCGTGAGACTTCCGTTGGTAATTTAAAA-ACTATACA------T----A----TAACGAATCATTTTA-GGG--AAAAAATGCCA
blockSeqs : TAAC AA GA ACTTTTT GTC GAA CAAT ATC TCCAAAAAGAAAGGT AG C A CG TGTA A A TAATA A C T TAAAATT ATAA G GA
blockSeqs : . . . . . . TT . TCAAAAAGGAAAGCT . T A CA A A T . A . C TAATA . . A
blockSeqs : . . . . . . AG . AAAAGGATAGCT . G A CT A T A . . . A TTATA . . A
blockSeqs : . . . . . . AT . TCCAAAAAGAAA . C T CA A T A . . . A TAATT . . .
blockSeqs : . . . . . . TT . TT . A A CA T T G . . . A T . . .
blockSeqs : . . . . . . AC . TT . G A CT T A A . . . C T . . .
blockSeqs : . . . . . . AC . TT . T A CG T G T . . . A T . . .
blockSeqs : . . . . . . TT . TT . A A CG A T T . . . C T . . .
blockSeqs : . . . . . . AG . TT . T A AG A A A . . . A T . . .
blockSeqs : . . . . . . TT . TT . G A CC T A A . . . C T . . .
blockSeqs : . . . . . . TA . TT . G G TG G A T . . . A T . . .
blockSeqs : . . . . . . TT . TT . G A CG A A T . . . T T . . .
blockSeqs : . . . . . . TT . TT . G A CA A A T . . . A T . . .
blockSeqs : . . . . . . TT . TT . C A CG A A A . . . C T . . .
blockSeqs : . . . . . . TT . T . G A T A A A . . . C T . . .
blockSeqs : . . . . . . TT . T . T . . . A T . . . C T . . .
blockSeqs : . . . . . . . . T . G . . . . T . . . A T . . .
blockSeqs : . . . . . . . . . . . . T . . . C T .
blockSeqs : . . . . . . . . . . . A . .
blockSeqs : . . . . . . . .
blockSeqs : . . . . . .
blockSeqs : . . . . . .
blockSeqs : . . . .
blockSeqs : . . .
blockSeqs : .
blockSeqCons : TT********************************* T**********
originalCons : TCACAGGTTTGTGACGACAGGGTAAC----GGAGGCGTGTCGATCCTTATTTCAATGTCACGGATTCAGTG--TCGATAGTTTTAAC--ATTGTAGAATAGTGC-------AACCCTACGCAAATACTGCCATTTACA---CTTCG---GGTCTCGTACAGAGGCTGTCCGGCATATAGTT--TTAG---AGCA----------T-------------T----------GTCGTTATGTTACGGATTA--AGTCGGTGAAAGTTAGAACCGACACACGGAAGCAAAACAATACCTCGGTACTT---ACAACCCAANAGCAATA-----GTCATGTTTCGTGAGACTTCCGCTGGTAGTTT-AAA-ACTNTACA------T----A----TAACGAATCATTTTA-GGG--AAAAATTGCCACTTTTTATACG
finalCons : TCACAGGTTTGTGACGACAGGGTAAC----GGAGGCGTGTCGATCCTTATTTCAATGTCACGGATTCAGTG--TCGATAGTTTTAAC--ATTGTAGAATAGTGC-------AACCCTACGCAAATACTGCCATTTACA---CTTCG---GGTCTCGTACAGAGGCTGTCCGGCATATAGTT--TTAG---AGCATT---------------------------------GTCGTTATGTTACGGATTA--AGTCGGTGAAAGTTAGAACCGACACACGGAAGCAAAACAATACCTCGGTACTT---ACAACCCAANAGCAATA-----GTCATGTTTCGTGAGACTTCCGCTGGTAGTTT-AAA-ACTNTACAT----------A----TAACGAATCATTTTA-GGG--AAAAATTGCCACTTTTTATACG
Alignments
lowQualScore : 44444444444444444444444444444444444 11111111111
lowQualScore : 3333 22 22 5555555 222 333 7777 333 33333333333333333333333333333333333 22 2 2 33 5555 1 1 55555 4 1 1 55555555555 4444 2 77 0
lowQualScore : .... .. .. ....... ... ... .... ... ................................... .. . . .. .... . . ..... . . . ........... .... . .. .
lowQualScore : 4444 22 11 7777777 999 000 7777 555 99999999999999999999999999999999999 99 2 2 99 4444 8 0 00000 0 9 7 00000000000 2222 2 55 4
consensus : TCACAGGTTTGTGACGACAGGGTAAC----GGAGGCGTGTCGATCCTTATTTCAATGTCACGGATTCAGTG--TCGATAGTTTTAAC--ATTGTAGAATAGTGC-------AACCCTACGCAAATACTGCCATTTACA---CTTCG---GGTCTCGTACAGAGGCTGTCCGGCATATAGTT--TTAG---AGCA----------T-------------T----------GTCGTTATGTTACGGATTA--AGTCGGTGAAAGTTAGAACCGACACACGGAAGCAAAACAATACCTCGGTACTT---ACAACCCAANAGCAATA-----GTCATGTTTCGTGAGACTTCCGCTGGTAGTTT-AAA-ACTNTACA------T----A----TAACGAATCATTTTA-GGG--AAAAATTGCCACTTTTTATACG
Reference ( family-194 ) : TCACAGGTTTGTGACGACAGGGTAAC----GGAGGCGTGTCGATCCTTATTTCAATGTCACGGATTCAGTG--TCGATAGTTTTAAC--ATTGTAGAATAGTGC-------AACCCTACGCAAATACTGCCATTTACA---CTTCG---GGTCTCGTACAGAGGCTGTCCGGCATATAGTT--TTAG---AGCA----------T-------------T----------GTCGTTATGTTACGGATTA--AGTCGGTGAAAGTTAGAACCGACACACGGAAGCAAAACAATACCTCGGTACTT---ACAACCCAANAGCAATA-----GTCATGTTTCGTGAGACTTCCGCTGGTAGTTT-AAA-ACTNTACA------T----A----TAACGAATCATTTTA-GGG--AAAAATTGCCACTTTTTATACG
gi|1 : TTTGTGACGGCAAGGTAAC----AGAGGTGTGTCGATCCTTATTTCAATGTCATGTATTCAATG--TCGATAGTTCCAAC--ATTGCAGAATAGTGC-------AACCCTATGCAAATACTGCCATTTACA---CTTGG---GGTCTTGCACGGAGGCTGTCCGGCATATAATA--CTAG---ATCA----------TCAAAAAGGAAAGCT----------GTCATTACGTTACGGACTA--AGTCGGTGGAAGTTAGTACCG--ACACTGAAGCAAAACAATACCTCGGTACTT---TCATCCAAAAATCAATA-----GTCGTGTTTTGTGAGAC-TCCACTTGCAGTTT-AAA-ACTATACA------TTATAA----TAACGAATCATGTTA---G--ACAAATTGACACCTTTTAT
gi|10 : cTCACAGGTTTGTGACGACAGGGTAAC----GGAGGCGTGTCCATCCATATTTTAATGTCACGGATTCAGTG--TCGATAATTTTTAC--ATTGTAGAATAGTGC-------AACCCTACGCATATACTGCCATTTACA---CTTCA---AGTCTCGTACAGAGGCTGTCCGGTATATAGTT--TTAG---AGCA----------T-------------T----------GTGGTTATGTTACGGATCA--AGTCCGTGAAAGTTAGAACCGACACACGGAAGCAAAACAATACCTCGGTACTT---ACAACCCAAAAGCA--A-----GTCATGTTTTGTGATACTTCCGTTACTAGATG-AAACACCTTA
gi|11 : gCACAGGTTTGTGACGACAGGGTAAC----GGAGAAGTGTCGATCCCTATGTTAATGTCACGGATTCAGTG--TCAATAGTTTTAAC--ATTGTAGAATAGTGT-------AACCCTACGCCAATACTGCCATTTACA---CTTCG---AGTCTCGTACAGAGGCTGTCCGGCAT-------------------------------------------T----------GTCGTTATGTTATGGATTA--TGTATGTGAAAGTTAAAACCGACTCACAGAAGCAAAACAATACCTCGGTACTT---ACAACCAAATAGCAATA-----GTCATGTTTCGTGAGACTTGTGCTGGTAGTTT-AAA-ACTCTACA------T----A----TAACGAATCATTTTA-GGA--AAAAATTGTCACTatcaaattgaatagatgca
gi|12 : TTTGTGACGACAGGTTTAC------AGGCGTGTCGATCCTTATTTCAATGTCACAGATTCAGTG--TAGAGAGTTTTAAC--ATTGTAGAATAGTGCACTTTTTAATCCTATGAAAATACTGACATTTACA---CTTCT---GGTCTTGCATAGAGGCTG-CCGGCATATAGTA--GTAGATCAGCAAAAAGGATAGC-------------T----------GTCGTTACGTTACAGACTAAGAGTCGGT---------------------GAAGCAAAACAA--------TACTT---ACA--TAAAAAGCAATG-----GTTGTGTTCCGTGAGACTTCCGCTGGCAGTTT-AAA-ACTATACA------T----A----
gi|13 : gcAGCTCTGTGACGACAGGGTAAC----GGAGGCACGTCGATCCTTATTTCAATGTCACAGATTAAGTG--TCGATGTTTTTATC--ATTGTAGAATAGTGC-------TACACTATGCAAATACTGCGATTTACA---CT--G---GGATTTTTACAGAAATTGTCCAGCATTTAATA--TTAA---AACA----------TCCAAAAAGAAAGGT----------GTCGTTATGTTACGGACTA--AGTCCGTGAAAGCTATTACCG--ACACTGAAGCAAAACAATACCTCGGTACTT---TCATCCCAAAAGCAATA-----GTCATGTTTCATGCAACTTC
gi|14 : TTTGTGACGACAGGG---C----AGAG-CGTGTCGATCCTTCTTTCAATGTCAGAGATTCAGTGAAGAGAGAGTTGTAAC--ATTGTAGAATAGTGC-------AACCCTATGAAAATACTGCCATTCACA---CTTCT---GGTCTTGCACAGAGGCTGTCC--------------------AGCA----------T------------------------------ATAGTAC----TA--GACCATCAAAA--TGGAACTGACACA--GAAGCAAAACAATTACTCGATACTT---TCATCAAAAGAGCAATA-----GTTGTGTTTCCCCAGACTTACACTCACAGTTT-AAA-ACTATACA------TAATAA----TAACAAA
gi|15 : gcATTAAGAG--TCGATAGATTTAAC--ATTGTAGAATAGTGC-------AACCCTATGTAGATACTGCCATTTACA---C-----------------AGAGGTTGTCCGGCATATAGACAATTAG---AGCA----------T-------------CCAAAAAGAAAGTTGTC--GTTAC----TA--AGTCGTTGAAAGTTAGAACCGTTAC--TGAAGCAAAACAATACCCCGGTACTT---TCATCTCAAAAGCAATATAATAGTCGTGCTTCGTGAGACTTCTGTTGGCAGTTG-AAA-AT--------------------------GAATCATGTTA-ATG--ACAAATTGCcttt
gi|16 : ACCCTACGCCAATACTGCCATTTACA---CTTCG---AGTCTCGCACAGAGGCTGTCCGGCATATAGTT--TGAG---AGCA----------T-------------T----------GTCGTTATGTTACGGATTA--TGTCTGTGAAAGTAAGAACCGACACACAGAAGCAAAACAATACCTCGGTATTT---ACAACCCAATAGCAATA-----GTCATGTTTTG-GAGACTTAC--------TTA-AAA-ACTATATA------T----A----TAACGAATCATTTTA-GGGA-AAAAATTGTCACTTTTTATATGaatgt
gi|17 : AGCTTTCTGAGGACAGTGTAAC----AGAGGCGTGTGGATCTTAATATCAATGTCACAGATTCAGTG--TAGAGAGTTTTAAC--ATTGTAGACTAGTGC-------AACCCTATGAAAATACTGCAATTCACA---CTTCT---GGTCTCGCACAGAGGCTTATCGGCATATAGT-----------ACA------------------------T----------GT-------------ACTA--GACCATCAAAA--TGGAACTGACACA--GAAGCAAAACAATACCTCGATACTT---ta
gi|18 : ---AGCA----------T-------------T----------GTCGTTATGTTACGGATTA--AGTCTGTGAAAGTTAGAACCGACACACAGAAGCAAAACAATACCTCAGTACTT---ATAGCTCAATAGCAATA-----GTCATGTTTCGTGAGACTTGCGTTGGTAGTTT-AAA-ACTCTACA------T----A----TAACAAATCATTTTA-GGG--AAAAATTGTCACTTTTTATAtc
gi|19 : ACAGTTTTGTGACGACAGGGTAAC----AGAGGCATGTCGATCCTTATTTCAATGTCACGGATTAAGTG--TC----------------TGTAGAATAGTGC-------AACC-TATACAAATACTGCCATTTACA---CTTCG---GATCTCGCACGGAGGCTGTCTGGCATATAGTA--CTAG---ATCA----------T-------------
gi|2 : TTTGTGACGGCAAGGTAAC----AGAGGTGTGTCGATCCTTATTTCAATGTCATGTATTCAATG--TCGATAGTTCCAAC--ATTGCAGAATAGTGC-------AACCCTATGCAAATACTGCCATTTACA---CTTGG---GGTCTTGCACGGAGGCTGTCCGGCATATAATA--CTAG---ATCA----------TCAAAAAGGAAAGCT----------GTCATTACGTTACGGACTA--AGTCGGTGGAAGTTAGTACCG--ACACTGAAGCAAAACAATACCTCGGTACTT---TCATCCAAAAATCAATA-----GTCGTGTTTTGTGAGAC-TCCACTTGCAGTTT-AAA-ACTATACA------TTATAA----TAACGAATCATGTTA---G--ACAAATTGACACCTTTTATcaacaaggaaagctgtcgtt
gi|20 : cTCACAGGTTTGTGACGACAGGGTAACTAACGGAGGCGTGTCGATCCTTATTTTAATGTCACGGACTCAGTG--TCGATAGTTTTAAC--ATTGTAGAATAGTGC-------AACCCTACGCCAATACTGCCATTTACA---CTTCG---AGTCTCGTAAAGAAGCTGTCCGGCATATAGTT--TT
gi|21 : gTCGTTATGTTACGGATTA--AGT----------TAGAACCAACACTCGGAATCAAAACAATACCTGGATATTTTGTACAACCCAAAAGCAATA-----GTCATGTTTCGTGAGACTTCCGCTGGTAGTTT-AAA-ACTCTACATAAAATT----A----TAACGAATCATTTTA-GGT--GGGAATTGCCA
gi|22 : TTTGTGACGACAGGATAAC----GGAGGCGCGTCGATCCTTATTTCAATGTC----------------GATCGTTTTAAC--ATTGTAGAATAGTGC-------AACCATATGCAAAAACTGCCATTTACA---CTTCG---GGTCTCGTACCAAGACTGTCCGGCATATGCTA--GTAG---AGC
gi|23 : TTACAGGTTTGTGACGACAGGGTAAC----GGAGGCGTGTCGATCCTTATTTTAATGTCACGGATTCAGTG--TCGATAGTTTTAAC--ATTGTAAAATAGTGC-------AACCCTACGTCAATACTGCCATTTACA---CTTCG---AGTC
gi|24 : TTTTAAC--ATTGCAGAATAGTGC-------AACCCTATGCAAATACTGCCATTTACA---CTTCG---GGTCTCGCACGGAGGCTGTCCGGCGTA
gi|25 : GGTTTGTGAAGACAGGTTACC----GGAGGCGTGTCGATCCTTATTTCAATGTCACGGATTCAATG--TCGATAGTGTTAAC--AATGTAGAATAGTGC-------AACCCTATGCAAAAACTGCTTTTTACA---CTacgtgaaaaaagtcggtcgtgaaaaagtagacttcgtcat
gi|26 : TATTCTTAAC--ATTGCAGAAGAGTAC-------AGCCCTGTGCAAATACT----TTCACGGTCCTTTGGAAGG----GTACAGAGGCTATTTGGTAT
gi|27 : TTTGTGACGACAGGGTAAG----GGAGGCGTTTCGATCCTTGTTTCAATGTCAGGGATTCAGTG--TCGATAGTTTTAACGAATTACAGAtttaatatcaatgataccaaggagaaggaa
gi|28 : gcCAGGTTTATGACGACAGGGTAAC----AGAGGCGTGTCGATCCTTATTTTAATGTCACGGATTCAGTG--TCGATAGTTTTAAC--ATTGTAGAATAGTGggtttatataatatttcacaccat
gi|29 : CAATAGCAATA-----GTCATGATTTGTGAGACTTGCGCTGGTAGTTA-AAA-ACTATACA------T----A----TAACGAATCATTTTA-GGGA-AAAAATTGTCACT
gi|3 : TCACAGGTTTGTGACGACAGGGTAAC----GGAGGCGTGTCGATCCTTATTTTAATGTCACGGATTCAGTG--TCGATAGTTTTAAC--ACTGTAGAATAGTTC-------AACCCTACGCCATTACTGCCATTTACA---CTTCG---AGTCTCGTACAGAGACTGTCCGGCATATAGTT--TTAG---AGCA----------T-------------T----------TTCGTTATGTTACGGATTA--AGTCGGTGAAAGTTAGAACCGACACACGGAAGCAAAACAATACTTCGGTACTT---GCAACACAATAGCAATA-----GTCATGTTTCGTGAGACTTCCGCTGGTAGTTT-TAA-ACTCTACA------T----A----TAACGTATCATTTTA-GGG--GAAAATTCTCACTTTTGATACG
gi|30 : AATA-----GTCATGTTTCGTGCGACTTCCGCTGGCAG-TT-AA----TATACATAAT--T----A----TAACAAATCCTTTTA-GGG--ATAAATTGCCAC
gi|31 : ----GGAGGTATGTCGATTACAATTTCAATGTCGCGGA-TAAGTG--TCGATATTCTAAAC--AGTGCAGAATAG
gi|32 : TTTGTGACGACAGAGTAAC----AGAGGCGTGTCGATCCTTATTTTAATGTCACGGATTAAGTG--TCGATAGTTTTcattttcaatcta
gi|33 : ACTTCCGCTGGCAGTTT-AAA-ACTTTACA------T----A----CAATGAAATATTTTA-GGG--ACAAATTGCCAGTTT
gi|34 : -ACTATGCA------T----AATAATAACGAACCATTTTA-GGG--ACAAATTGACACTTT
gi|35 : TCACAGCTTTG---CGACATGGTAAC----GAAGGTATGTCGATcctgtgtattatcct
gi|4 : aattgTTACAGGTTTGTGACGACAGGGTTAT----GGAGGCGTGTCGATCCTTATTTTAATGTCACTGATTCAGTG--TCGATAGTTTTAAC--ATCGTAGAATAGTTT-------AACCCTACGCCATTACTGCCATTTACA---CTTCG---AGTCTCGTACAGAGGCTGTCCAGCATATAGTT--AAAG---AGCA----------T-------------T----------GTCGTTATGTTACGGATTA--AGTCGGTGAAAGTTAGAACCGACACAAGGAAGCAAAACAATACCTCGGTACTT---AAAACACAATAGCAATA-----GTCATGTTTCGTGATACTTCCGTTGGTAGTTT-TTA-ACTCTACA------T----A----TAAAGAATCATTTTAGGGG--AAAAATTGTCACTTTCGATAC
gi|5 : ACATGTTTGTGACGACAGGGTAAC----GGAGGCGTGTTGATCCTTATTTAAATGTCACGGATTCAGTG--TCGATAGTTTTAAC--ATTGTAGAATAGTGC-------AACCCTACGCAAATACTGCCATTTACA---CTTCG---GGTCTCGTACTGAGGCTGTCCGGCATATAGTT--TAAG---AGCA----------T-------------T----------GTAGTTATGTTACGGATTA--AGTCGGTGAAAGTTAGTACCGGCATACCGAAGCAAAACAATACCTCGGTACTT---ACAACCCAAAAGCAATA-----TTCATGTTTCGTGAGACTTCCGCTGGTAGTTT-AAA-ACTCTTCA------T----A----TAACGAATCATTTTA-GGGGAAAAAACGGCCACTTTTTATA
gi|6 : CACAGGTTGGTGACGACAGGGTAAC----GGAGGCGTGTCGATCCATATTTTAATGTCACAGATTCAGTG--TCAATAGTGTTAAC--ATTGTAGAATAGTGC-------AACCCAACGCAAATACTGCCATTTACA---CTTCA---AGTCTCGTGCAGAGGCTGTCTGGTATATAGTT--TTAG---AGCA----------T-------------T----------GTCGTTATGTTACGGATCA--AGTCCGTGAAAGTTTGAACCGACACATGGGCGTAAAATAATACCTCGGTACTT---ACAACCCAAAAGCAATA-----GTCATGTTTCGTGATACTTCTGCTGGTAGTTT-AAA-ACTCTACA------T----A----TAACGAATCATTTTA-GAG--AAAAATTGCCACTT
gi|7 : CACAGGTTTGTGACGACAGGGTAAC----GGAGGCATGGCGATCCTTATTTTAATGTCACGTATTCAGTG--TCGATAGCTTTAAC--ATTGTAGAATAGGGC-------AACCCTACGCAAATACTGCCATTTACA---CTTCG---AGTCTCGTACAGAGGCTGTCCGGATTATAGTT--TTAA---AGCA----------T-------------T----------GTCTTTATGTTACGGATTA--AGTCGGTGAAAGTTAGAACTGACATACGGAAGCAAAACAATACCTCGGTACT------AACCCAGTAGCAATA-----GTCATGTTTCGTGAGACTTCCGTTGGTAATTTAAAA-ACTATACA------T----A----TAACGAATCATTTTA-GGG--AAAAAATGCCA
gi|8 : TCACAGGTTTGTGACGACAGGGTAAC----GGAGGCATGTCGATCCTTTTTTTAAAGGCACGGATTCAGTG--TCGATAGTTTTAAC--ATTGTAGAATAGTGC-------AACCCTACGCCAATACCGCCATTTACA---C-------------GTACAGAGGCTGTCCGGCATATAGTT--TTAG---AGCA----------T-------------T----------GTCGTTATGTTACGGATTA--AGTCTGTGAAAGTTAGAACCGACACACAGAAGCAAAACAATATCTCGGTACTT---ACAACGCAATAGCAAAA-----GTCATGTTTCGTGAGACTTCCGCTGGTAGTTT-AAA-ACTCTACA------T----A----TAACGAATCATTTTA-GGG--GAAAATTGTCACTTTTTATat
gi|9 : gCACAGGTTTGTGACGACAGGGTAAC----GGAGGCATGGCGATCCTTATTTTAATGTCACGTATTCAGTG--TCGATAGCTTTAAC--ATTGTAGAATAGGGC-------AACCCTACGCAAATACTGCCATTTACA---CTTCG---AGTCTCGTACAGAGGCTGTCCGGATTATAGTT--TTAA---AGCA----------T-------------T----------GTCTTTATGTTACGGATTA--AGTCGGTGAAAGTTAGAACTGACATACGGAAGCAAAACAATACCTCGGTACT------AACCCAGTAGCAATA-----GTCATGTTTCGTGAGACTTCCGTTGGTAATTTAAAA-ACTATACA------T----A----TAACGAATCATTTTA-GGG--AAAAAATGCCA