lowQualScore : 111111111111111 1111 111111111 11111111111111 1111111111 5555555555555555555555555555555555555555555555 555555555555555555555555555555555555555555555555555555 22222222222222 111111111111 33333333333333333333333333 2222222222222222222222222222 22222222222222222222 1 111111111111 11111 22222222222222222222 1111111111 11111111 11111 1 11
lowQualScore : 8 6 111111111111111 66666666 55555 1 5555555 1 1 3333 333333 1 11 1 1 11 333333333 11 333 111 999 11 111 22 44444444444444 11 1 1 1 11 22 1 222222 777 1 2222 3333333333 44444 222 11 1 8888888888 33 44444 1111111111111111111111111111111111111111111111 55555 22 6666666 333 22 2 333333333333333333333333333333333333333333333333333333 2 2 66666666666666 2 8888888 555555555555 33 55 2 666666 2 66666 55555555555555555555555555 2 6666666666666666666666666666 666666 2 5555 00000000000000000000 5555 33 4 8888888 4 111111111111 99999 33333 33 00000000000000000000 4444444444 3 77777777 44444 2 2 2 9 00 3 55 7 0
lowQualScore : . . ............... ........ ..... . ....... . . .... ...... . .. . . .. ......... .. ... ... ... .. ... .. .............. .. . . . .. .. . ...... ... . .... .......... ..... ... .. . .......... .. ..... .............................................. ..... .. ....... ... .. . ...................................................... . . .............. . ....... ............ .. .. . ...... . ..... .......................... . ............................ ...... . .... .................... .... .. . ....... . ............ ..... ..... .. .................... .......... . ........ ..... . . . . .. . .. . .
lowQualScore : 3 4 444444444444444 33333333 88888 7 4444444 5 5 6666 888888 3 88 5 2 44 111111111 77 666 888 888 44 888 44 00000000000000 33 0 0 0 44 44 0 666666 555 1 3333 4444444444 44444 111 77 7 5555555555 55 22222 6666666666666666666666666666666666666666666666 00000 88 5555555 555 88 0 555555555555555555555555555555555555555555555555555555 7 1 66666666666666 1 1111111 666666666666 44 99 5 777777 5 22222 99999999999999999999999999 5 6666666666666666666666666666 333333 5 3333 22222222222222222222 3333 44 5 1111111 6 888888888888 55555 44444 99 88888888888888888888 6666666666 3 77777777 00000 5 5 2 2 11 1 77 1 4
consensus : AGTGGCCCAGATAAGGTGATTT---------------T--------GG-----GGG-T-------A-TTTTAC-CC---TCAT------G-ATTT--AGCTA-AATACC--CC------N--TA-GTT---T---TC-AA--A---A--AA-T---------G-G--GGGT-AAAT-TT-A--C--C-C-C----TTAN-TTT-T----AAAAGT----T-A---GGG-----GT---A--AAGTT-A-C------T-C-CTC-----CAA----AA----C-TATA----T---TCCG-----AAACT--------GA-----AA--TA-------T---GAA--AAACC-TTG------TT----TAAAAN-ACA---TG--N----A-TAAT--GATTTC-----ATA-TCTTGGAGACCCGTGTGTC-------TAGATAGCAAATGA-------AATT--G-------T--AAAT--TAC-T-----TAA-TC-----TAAATAA------------T---A-----TT--ATG-TA-----------A-----G---T------AAGTAA--A---GT-TTT----TAA------------------C-T----GA--AATAA-------ATGAA-------A----ATTCT--T-CATTACCCGCA--CCT----------GG--------GA----------GT-TAAATA---C---CCC-CAATCTT-TTCAA-TTTTGGGGGTAAATTACCCTCTTATCAAAAA-AGTTATCTGGGG
Reference ( gi|8 ) : AGAGGCCCAGATAAGGTAATTT---------------T--------GG-----GGG-T-------A-TTTTAC-CC---ACAT------G-ATTT--AACTA-AATACC--CC------A--TA-GTT---T---TC-AA--A---A--AA-T---------G-G--GGGT-AAAT-TT-A--C--C-C-T----TTAA-TTT-T----AAAAGT----T-A---GGG-----GT---A--AAGTT-A-C------T-C-TTC-----CAA----AA----T-TATA----T---TCCG-----AAACT--------GA-----AA--TA-------T---GAA--AAACC-TTG------TA----TGAAAA-ACA---TG--A----A-TAAT--AAGTTG-----GTA-TCTTGGAGACCCACGTGTC------GTAGATAGCAAATGA-------AACT--G-------T--AAAT--TAC-T-----TAA-TC-----TAAATAA------------T---A-----CA--ATG-TA-----------A-----G---T------AAGTAA--A---AT-TTT----TAA------------------C-T----GA--ATTAA-------ATGAA-------A----ATTCT--T-CATTACTTGCA--CCT----------GG--------GA----------GT-TAAATA---T---CCC-CAATCTT-TTCAA-TTTTCGGGGTAAAATACCCTCTTAACAAAAA-AGTTATCTAGAG
gi|1 : AGTGGCCCCGATAAGGTGATTTGGGTGGTTGTGGGGTT--------GG-----GGG-TGATGGGTA-TTTTAC-CC---ATAT------G-GTAT--AGCTA-AATACC--CC------T--TA-GTT---T---TC-AA--A---A--A--T---------G-G--AGGT-GAAT-TT-A--C--A-T-C----TTAC-TTT-T----GAAAGT----T-T---GGG-----GT---A--AAGTT-A-C------T-C-CTC-----CAA------------TATAAATTT---TCTG-----AA-CT--------GA-----AA--TA-------T---TAA--AACCC-TTG------TT----TAAAAT-ACA---TG--T----A-TAAT--GATTTC-----ATA-TCTTGGACACCAATGTGTC------TTAGATAGCAAATGA-------AAGT--G-------T--AAAT--TAC-T-----TAA-TA-----CAAATGA------------T---AATTTTTATTATG-TA-----------A-----G---T------TAGTAA--A---GT-TTT----TAATTGACATAAATGAAAATTC-T----GA--ATTAAGATCTTAATGTATCTTACGACTGTATGCT--T-CATTACCCTCA--CCTCT--------GAAAATCTCAGA----------GT-AAAATA---C---CCC-CA-TCTT-TTCAA-TTTTGGGGGTAAAATACCCTCTTATCAATAA-AGTTATCT
gi|4 : AGTGGCCAAGATAATGTCATTT---------------T--------GG-----GGGGT-------A-TTTTAC-CC---TCAT------T-GTTT--AGCTA-AATACC--ACTTACATG--TA-GTT---T---TA-AA--A---A--AA-T---------G-G--AGGT-AAAT-TT-A--C--C-C-C----TTAC-TTT-T----ATAAGT----T-G---GGG-----GT---A--AAGTT-A-C------T-C-CTC-----CAA------------TACAAAT-T---TTCT-----AAACT--------GA-----AA--TG-------T---GAA--AAACT-TTG------TT----TAAAAT-ACA---TG--T----A-TAAT--GATTTC-----ATA-TCTTGGAGACCCATGTGTC------TTAGATAGCAAATGAAAGTTTAAATT--ACTTTATCT--AAATAATAC-T-------A-TT-----TAAGTAAGTAGTTTTTAACT---A-----AA--ATA-TATAAAAATTCTGA-----T---T------AAGTAA--G---AT-TTT----TAA--------------------T----GT--ATTAA--------TGTA-------------TGCT--T-CATTACCCTCA--CCTCTGAAAATCTGG--------GA----------GT-TAAAT----------------CTT-TTCAA-TTTTTGGAGTAAAATACCCTCTTATCAAAAA-TGTTATCTGGAGgcagc
gi|5 : AGTGGCCCAGGTAAAGTGATTT---------------T--------GG-----GGG-T-------A-TTTTAC-TC---TCAT------G-CTAT--AGCTA-AATACT--CG------C--TA-GTT---T---TT--G--A---A--AA-T---------G-G--ATGT-AAAT-TA-A--C--C-T-T----TCAA--TT-T----AAAAGT----A-A---GGG-----GT---C--AAGTT-A-T------T-C-CTCTCAAACAA----AATTT-T-TATA----T--------------AT----------A-----AA--TA-------C---GAG--AAACC-TTG------TT----TGAA-----A---TG--T----A-CGAT--A--TT------ATA-TCTTGTCGACCTGTGTGTC-------TAGATAGCAAATGA-------AATT--G-------T--AATT--TAC-TTACAATAA-TC-----TAAATCA------------T---A-----TT--ATG-CA-----------A-----G---C------AGGTAA--A---GA-TTT----TAA------------------A-T----GA--AATAA-------ATGAA-------A----Ac
gi|7 : AGTGGCCCAGGTAAAGTGATTT---------------T--------GG-----GGG-T-------A-TTTTAC-TC---TCAT------G--CTA--AAGCATAATACT--CG------C--TA-GTT---T---TT-GA--T---A--A--T---------G-G--ATGT-AAAT-TA-A--C--C-T-T----TCAA-TTT------AAAAGT----A-A---GGG-----GT---C--AAGTT-A-T------T-C-CTC-----TGA----AA----C-AAAA----T---TTCT-----ATACA--------GA-----AA--TA-------C---GAG--AAACC-TTG------TT----TGAA-----A---TG--T----A-TGAC--A--TT------ATA-TCTTGTCGACCTGTGTGTC-------TAGATAGCAAATGA-------AATT--G-------T---ACT--TACAA-----TAA-TC-----TAAATCA------------T---A-----TT--ATG-CA-----------A-----G---C------AGGTAA--A---GA-TTT----TAA------------------A-T----GA--AATAA-------ATGAA-------A----Aatttgaattttaataaataaaattgcaatgtatgtctgatgttatgcatctttaccaacatctgggagttaaatccctcaaacttttccatttgggggttaaattactct
gi|19 : AGAGGTCTGGATAAGGTGATTG---------------T--------GG-----TGG-T-------A-TTTTAC-C------AT------G-ATTT--AGCTA-ATTACT--CC------T--TA-GTT---T---GA-AA--A---C--AA-T---------T-G--GGAT-ATAT-TT-A--C--C-C-C----ATAGCTTT-T----AAAACT----T------------------------TT-A-C------TCC-TTC-----CAA----AAGACTC-TATA----T----------------T--------GA-----AA--TA-------T---GGT--TATTC-TTATTTATTTA----TCAGAT-ACA---TG--T----A-TAAT--GAatttgaattttaataaataaaattgcaatgtatatctgttgttatgcatctttaccaacatctgggagttaaatccctcaaacttttccatttgggggttaaattactct
gi|39 : ttaatttacaatacGAGGCCAAGATAATGTGGTTT---------------T--------CG-----GGA-T-------A-TTTTAT-CG---TCAT------G-ATTT--AGCTT-AATA-T--CT------G--TA-GTT---T---TG-AA--A---A--cataaaatgaactcaaaatacaaaatttgaacttgttatattatgta
gi|15 : GGCCCAGAAATGATGATTT---------------T--------AG-----GGG-T-------A-TTTTAC-CC---TCAT------G-ATTT--AACTA-AATACC--CC------T--GA-GTT---T---TC-AA--A---A--AAAT---------G-G--ATGC-ACAT-TT-A--C--C-C-C----TTAC-TTT-T----AAAAGT----T-A---AAG-----TT---A--AAGTT-A-C------T-C-TTC-----CAA----AA----C-AA-A----T---TTTGT----GAACT--------GA-----AA--TA-------T---GAA--AAACCATTAA-----TACATTTAAAAT-ACA---CG--T----A-TAAT--GATTTC-----ATA-TCTTGGAGACCCACTTGTC------TTAGATAGAAAGTGA-------ATTT--A-------T--AAAT--TTC-T-----AAA-TC-----TAAATAA------------T---A-----TT--ATG-TA-----------A-----A---T------AAGTAA--A---GT-TTT----TAA------------------C-T----GA--AATAA-------ATGAA-------A----ATTC
gi|3 : gtGGCCCAGATAAGGTGATTT---------------G--------GG-----GGG-T----------TTTAC-CC---TCAT------G-ATTT--AACTA-AATATC--CC------T--TA-GTT---T---TT-AA--A---A--AA-T---------G-G--ATGT-AAAT-TT-A--C--C-T-C----TT-----T-T----AAAAGA----T-G---GGG-----AT---A--AAGTT-A-C------T-G-TTC-----CAATACAAA----G-TTTC----T---TTT---------TT--------GA-----AA--TA-------T---GAA--AAAGC-TTG------TT----TAAACT-ACA---TA--T----A-TAAT--GATTTC-----ATA-TCTTGGAGACCCACTTGTCTTACCGGTAGGTAGCAAATGA-------AAGT--G-------T--ACAT--TAC-T-----TAA-TCTACCTTAAATAA------------T---A-----TT--ATG-TA-----------A-----G---T-----------A--A---AG-TTT----TAA------------------C-T----GA--TATAA-------ATGAA-------A----ATTCT--G-AATT--TTGCA--C
gi|2 : GGCCAAGATAAGGTGATTT---------------T--------TA-----GGG-T-------A-TTTTAC-CT---ACAT------T-GTTT--ATCTC-AATACC--CC------T--TA-GTT---T---TC-AA--A---A--T--T---------G-G--AGGT-CAAT-TT-A--C--C-C-C----TTAC-TTT-T----AAAAGT----A-A---GGA-----GT---A--AAGTT-G-C------T-C-TTC------------AA----T-TACAAGGTT---TCTG-----AA-CA--------AA-----AA--TA-------T---GAA--AAGCC-TTG------TT----TAAAAT-ACA---AG--T----A-AAAT--GATTTT-----ATA-TTTTGGAGACCCATGTGTC------TTAGAAAGCAAATGG-------AAGT--G-------T--AAAT--TAC-T-----TAG-TT-----TATATAA------------T---A-----TT--ATG-AA-----------A-----G---T-------ATTAA--A---AT-TTT----TAA------------------T-T----TA--AATAA-------ATGAA-------A----Atattaaagtagaattttgatatttctcatttctttatgcttcattaccctctactctgaaaaactgagagttgaatacccccatcttttcaattttgggggtaaaatactctctcaaaaaaagatatctgga
gi|11 : gtGGCCCAGATAAGGTGATTT---------------T--------GG-----GGG-T-------A-TTTTAC-CC---TCAT------G-GTTT--AGCTA-AATACC--CC------T--TA-GTT---T---TC--A--A---A--AT-T---------G-G--AGGT-AAAG-TT-A--C--C-C-C----TTAC-CTT-T----AAATAT----A-G---GGG-----GT---A--AAGTT-A-C------T-C-TTC-----TCA----AA----C-AAAA----T---TTCT-----ATACT--------GA-----AA--TA-------T---GAA--AAACC-TTA------TT----TA------------G--A----A-TGTT--A--CTT-----ATA-TCTTGTAGACCC-------------------------------------TT--G-------T--AAAT--TAC-T-----AAA-CC-----CAAATCA------------T---A-----TT--ATG-TA-----------T-----G---TTA----AAGTAC--A---GT-TTT----TAA------------------C-T----GA--AATAC-------ATAAC-------A----ATTCT--C-AATT--TTACA--aatctgattttggcactaagtacgattttggtgtatcttacgactgtatgcttcactaccctcacctctgaaattctcaaagttaaatacccccatcttataaatttttggggtaaaataccctcttatcaataaagttatcttgag
gi|9 : GGCCCAGATAAGGTAATTT---------------T--------GT-----GGG-T-------A-TATTAC-CC---CCAA------T-ATTT--AGCTA-AATACC--CC------T--TA-GTT---T---TT-AA--A---AT-AA-------------G--GGGA-ACAT-TT-A--C--C-CAT----TT---TCT-TTGAAAAAAAT----------GGG-----GT---ATTTAGTTAA-C------TCC-TTC-----CAA----A-------TATT----T---TC--------AAC----------------------------------AA--AGATC--TG------TG----TAAAAA-ATA---GG--ACTTTA-TAAT--Aataaattataattttatcttaaacttaatgcttccttacccatatctctgaaaatctgggattgaatgccccct
gi|31 : gtGACCCAGACAATGTGATCT---------------T--------GT-----GAA-C-------A-CTTTAT-AT---CCAT------A-ATTT--AACTA-AATACCTTTC---------TG-ATT---T------AG--A---A--AA-T---------G-G--GGAT-ATAA-TT-A--C--C-taaggaaaatgaaataaaagtaaactacataatttacgttatattatgtaactttaactgaaataaattgaaactgactgcaatgaatcttagatcttgtgcctattaacgccacagcttcaatagatcttgatgtaaaaatatcccacctgttaaaattttgggggtaaataaccctcttaataaaaatagtatcttgggcact
gi|44 : GGCCAAGATAAGCTGATTT---------------T--------GT-----GTG-T-------A-TTCTAC-CC---TCAT------C-ATTT--A
gi|38 : gtGGCCCAGATTAGGTGATTT---------------C---------G-----AGG-T-------A-CTTGACTCC---AAA-------G-ACGT--AGCTA-TATATC--CA------T--TG-GTT---A---T---A--A---A--AA-T---------cc
gi|6 : CCTAGATAAAGTTAATT---------------T--------GA-----GTA-C-------A-TTTTAC-TC---TCGT------G-A------------AT----------------TA-GTT---T----------A---A--AA-T---------G-G--CAGT-AAAT-TTGA--CG-C-T-T----TTAA----------AAAAAT-----------GGCT---GTGAAA--AAGTA-T-C------C-C-TTC-------------A----T-TATA----A---ACTG-----AAATTTTATATTAGT-----AT--TA-------T---GAA--AAGTT-GTG------TT----TAAAAA-A---------A----A-AAAT--GATTT-------TACTCTAAAAGAC-------------------ATA-----TGA-------AA------------T--AA------C-C-----TAAGTT-----TGAATAA------------C---A-----TT--ATG-TA-----------A-----G---T------AAGAAA--G---AT-CTT----TAA------------------C-T----GA--AATAA-------ATAGA-------A----ACTCT--t
gi|4 : CCAGATAACAT--TTT---------------T--------GATAAGAGGG-T-------A-TTTTAC-TCCAAAAATTGAAAAG-ATTT--AACT-------C--CC------A--GA--TT---T---TC--A--G---A--GG-T---------G-A--GGGT-AAgatggaactgttcaatttgctgattgcgacggattattgctatatttaggctgtttacaaacatcttcaagtttatgagagttaaataatgtcgctttttcatctttgagaataaattacctttgtaacaggaaattatctggggcg
gi|43 : agtggccaagataatgtcattttggggggtattttaccctcattgtttagctaaataccacttacatgtagttttaaaaaaatggaggtaaatttaccccttacttttataagttgggggtaaagttactcctccaatacaaattttctaaactgaaatgtgaaaaactttgtttaaaatacatgtataatgatttcatatcttggagacccatgtgtcttagatagcaaatgaaagtttaaattactttatctaaataatactatttaagtaagtagtttttaactaaaatatataaaaattctgattaagtaagatttttaatgtattaatgtatgcttcaCCAGATAATATGTTTT---------------T--------TA-----GAG-T-------A-TTT-AC-CC---TGAT------G-ATTA--AATCG-AATACC--agc
gi|29 : AAATAAGTTGGTTT---------------T--------TG-----GAG-T-------AGTTTTAC-CT---CC-T------G-ATTT--AAGTA-AATACC--TC------T--TA-GTT---G---TCTTG--A---A--AA-T---------G-T--GGGT-AAAT-TT-
gi|34 : atAGGCAAGATAATTT---------------T--------GGT----GGG-T-------A--TTTAT-CC---GCAT------G-ATTC--AGCTA-AATAGT--AA------A--TA-AAT---TATATC-AA--A---A--AA-tcttctt
gi|24 : agatttcaATAAAGTGACTT---------------T--------GG---------------------------C---TCAT------G-ATTA--AGCTA-AATACC--CA------A---A-GTT---T---TC-AA--AGGTA--AA----------------GGAT-AAAC-TA-A--T--T-C-T----T
gi|1 : ccagatttAGATAACTT---------------TATTGATAAGA-----GGG-T-------A-TTTTAC-CC---CCA-------------------A-AAT-----------------------------TG-AA--A---A--GA-T---------G-G--GGGT--ATT-TT-A--C--T-C-T----GAGA-TTT-T----CAGAGG----T-G---AGG-----GT---A--Acccaaagtttctatactggactata
gi|42 : agtggccccgataaggtgatttgggtggttgtggggttgggggtgatgggtattttacccatatggtatagctaaataccccttagttttcaaaaatggaggtgaatttacatcttacttttgaaagtttggggtaaagttactcctccaatataaattttctgaactgaaatattaaaacccttgtttaaaatacatgtataatgatttcatatcttggacaccaatgtgtcttagatagcaaatgaaagtgtaaattacttaatacaaatgataatttttattatgtaagttagtaaagtttttaattgacataaatgaaaattctgaattaagatcttaatgtatcttacgactgtatgcttcaGTGATTC---------------T--------GG-----GGG-T-------A-ATTTAT-CC---TCAT------G-GTTT--AGCTA-AATgcagc
gi|25 : tgaaccgaacata--------GG-----TGG-T-------A-TT----------GCAT------G-ATTT--AGCTA-AATACC--TC------T--AA-GTT-----------A--A---A--AA-T---------T-G--GACC-AAAT-TT-A--C--C----------AA-ACT-T----AAAAAC----T-T---GGG-----GT---A--AATAT-A-C------C-C-ATC-----
gi|22 : ccaataaG-----GGG-T---------TGTTAG-CC---TAAT------G-ATTT--AGCTT-GATA------------G--TT-GTT---T---T--AA--A---A--AA-T---------A-G--GGGC-AAAT-CT-T--T--C-C-C----ATAC-CTT-T----GAAACT----A-G---GGG-----GT---A--AATTG-A-C------T-C---C-----CAT----AA----A-TGTA--------TCTG------AATT--------G----------TA-------T---TGA--AAACC-
gi|27 : attagatgattatggtggcgagga-TTTTAC-CC---CAAT------G-ATTT--AACTA--------------------TA---T---T---T---A--A---A--AC-T---------G-G--G--T-GAAT-TT-A--C--C-T-C----TTAC-ATT-T----AAAAG-----C-A---GGGAGAACAT---A--ATGAT-A-CT-----T-C-TTC-----CAA----Agattacttaa
gi|14 : -TTTT---CC---TCAT------G-GTTT--AGCTT-AATACC--AT------T--TT-GTT---T---AC-AA--A---A--AA-T---------T-G--TATT-AAAT-CT-A--C--A-C-T----TT-A-CTT-T----ATAAAT----T-T---GGG-----AT---A--AAA---A--------------------CAA----CA----C-AGTA----T---CCTT-----AAAGT--------GAGGGGTAAATTACTCCCTCT---GAATTAAATT-TTT------TT----TAAAAAGACT---TGTTA----A--AAT--AAATTGATTTTATA-TTTT-AAGA---AAG----------GTAAATA--AAATCA-------AA----G-------T--AAGTA-TAC-C-----TAA-TT-----TAAATAA------------T---A-----TT--ATGTTA-----------A----------------AAGTTA--ACTTAT-TTT----TAA------------------TAT----GA--A-TAA-------ATta
gi|13 : t-CC---TCGT------G-GTTT--AGCTA-AATACT--CC------T--TA-GTT---T---TC-AA--A---A--T--T---------G-G--AGGT-AAAT-TT-A--C--C-C-C----TTAC-CTT-T----AAAAGT----A-A---GGG-----AT---A--ACGTT-A-C------T-C-ATC-----CCA----AA----C-AAAA----T---ATCT-----ATACT--------GA-----AA--TA-------C---GAA--AAACC-TTG------TT----TAGAAT-GTA---TG--A----C-T--T--A-----------TA-TCTTGTAGACCC-------------------------------------TT--G-------T--AAAT--TGC-T-----GAA-CC-----TAAATAA------------T---A-----TT--ATG-TACT---------G-----G---TATGTTAAAGTAA--A---GT-TAT----TAA------------------C-TGTCAGA--AATAT-------ATGAA-------A----ATTCT--agtataggatatagatctgaattgtttaatgtactgattgta
gi|4 : ---ACAT------GTATTTTAAACAA-AGTTTT--TC------A--CA-TTTCAGT---TT-AG--A---A--AA-TTTGTATTGGA-G--GAGT-AACT-TT-A--C--C-C-C----C-AA-CTTAT----AAAAGT----A-A---GGG-----GT---A--AATTT-A-CCTCCATT-T-TTT-----TAA----AA----C-TACA----T---gaattttacaataaataatatttcatctttaactttaagcttccttacccatatctctgaaaatctcacactcccatttttactattttgggggt
gi|9 : agtggccaagataatgtcattttggggggtattttaccctcattgtttagctaaataccacttac------G-AGTT--AACTA-AATACC--CC------A--TT-TTT---T---TC-AAAGA---A--AA-T--------------GGGT-AAATGTT-C--C--C-C-T----T--A-TTT-T----AAAAAC----TAA---GGG-----GT---A--ataatgatttcatatcttggagacccatgtgtcttagatagcaaatgaaagtttaaattactttatctaaataatactatttaagtaagtagtttttaactaaaatatataaaaattctgattaagtaagatttttaatgtattaatgtatgcttcattaccctcacctctgaaaatctgggagttaaatcttttcaatttttggagtaaaataccctcttatcaaaaatgttatctggagc
gi|10 : gtggcccagataaggtaattttgtgggtatattacccccaatatttagctaaa------G-GTTC--AGTTA-AATATC--CC------A--TA-ATT---T---TC-AA--A---T--A--T---------G-A--AGTT-AAAT-TT-A--C--CAC-T----T--A-TCA-T----AAAAAG----T-A---GAG-----AC---G--GTGTT-AAC------T-C-CTC-----CCA----AA----C-AAAA----C---TTCT-----GTACT--------GA-----TA--TT-------T---AAA--AAA--------------------AAAA-TCGAT-TG--A----AATATTTAAAATTA------TA-TCTTGTAGACCCGTATATT-------TAGAAAGCCAATGG-------CATG--G-------T--AAAT--TAC-T-----TAA-TC-----TAAAAAA------------T--------------TG--A-----------A-----A---T------AAATAAAGA---AT-TTT------A------------------C-T----GA--AATAA-------ATGCA-------A----ATTCT--G-AATT--TTGCA--cttccaaatattttcaacaaagatctgtgtaaaaaataggactttataatataaggaaaatgaaataaaagtaaactacataatttacgttatattatgtaactttaactgaaataaattgaaactgactgcaatgaatcttagatcttgtgcctattaacgccacagcttcaatagatcttgatgtaaaaatatcccacctgttaaaattttgggggtaaataaccctcttaataaaaatagtatcttgggcact
gi|3 : T--AACTT-TAT-CC--CC------A--T---CT---T---TT-AA--A---A-----------------G--AGGT-AAAT-TT-A--CATC-C-A----TT---TTT-T----AAAAAC----T-A---AGG-----Gataaacaaaggttgcgaacaatctttgactttataagtctttacccatatctctgaaaatctggaaattaaaatacgacaatcttttccattttgggtttaaattattctttcattaaaatgtcat
gi|16 : ggcccagataaggtgatttggggggttttaccctcatgatttaactaaatatTA-AATACC--CCC-----A--TT-GTT---T---CC-A-------------TTTTG-----G-G--GGGT-AAAT-T--A--C--C-C-TCATATTAA----------AAAAGT----T-A---ctgttccaatacaaagtttcttttttgaaatatgaaaaagcttgtttaaactacatatataatgatttcatatcttggagacccacttgtcttaccggtaggtagcaaatgaaagtgtacattacttaatctaccttaaataatattatgtaagtaaagttttaactgatataaatgaaaattctgaattttgcactattaaagtagaattttgatatttctcatttctttatgcttcattaccctctactctgaaaaactgagagttgaatacccccatcttttcaattttgggggtaaaatactctctcaaaaaaagatatctgga
gi|17 : cactcctcccaacaaaagttgaaacatgaaaaaccttgtttagaatatataactttatatcttttagacccgtgtgtcagggtaacaagtgaaattgttaattattttatctaaataatattattatacatagtaagtaatgttttttactgaaataaaagaaaattctgagttttacaagtagggttgtatcttagactgtttctttacctatgtctcagaaaatctgggagtA-AATACC--CC------T--TAAGTT---T---TA-AA--A---A--AA-A---------A-G--GAGTTGCAT-TT-A--C--C-C-C----TTAC-TTT-T----AAAAGT----T-T---GGG-----GT---A--AAGTT-A-C------A-C-CTG-----CAA----AA----CAAATT----T---TCTG-----AAA-T--------GA-----AA--TA-------T---AAA--AAACC-TTG------TT----TAGAAT-ACA---TG--T----A-TAAT--GATTTC-----ATA-TCTTGGAGACAAATGTGTC------TTAGATAGCAAAAAA-------AAGT--G-------T--AAAT--TAC-T-----AAA-TC-----TAAA-AA------------T---A-----TT--ATA-TA-----------A-----G---T------AAGTCA--A---GT-TTT----TAA------------------T-T----GA--AATAA-------ATG-A-------A----GTTCT--G-AATT--TTGCA--tctgggaca
gi|1 : TACC--CC------A---A-ACT---T---TC-AA--A---AGTAA-------------G--ATGT-AAAT-TC-A-----C-C-T----CCAT-TTT-T----GAAAAC----TAA---GGG-----GT---A--ataagtaagatt
gi|2 : agtggccccgataaggtgatttgggtggttgtggggttgggggtgatgggtattttacccatatggtatagctaaaTACT--CC------T--TA-CTT---T---T---A--A---A--AG-T---------AAG--GGGT-AAAT-TG-A-----C-C-T----CCAA-TTT-T----GAAAAC----TAA---GGG-----GT---A--aagttactcctccaatataaattttctgaactgaaatattaaaacccttgtttaaaatacatgtataatgatttcatatcttggacaccaatgtgtcttagatagcaaatgaaagtgtaaattacttaatacaaatgataatttttattatgtaagttagtaaagtttttaattgacataaatgaaaattctgaattaagatcttaatgtatcttacgactgtatgcttcattaccctcacctctgaaaatctcagagtaaaatacccccatcttttcaattttgggggtaaaataccctcttatcaataaagttatctgcagc
gi|11 : gtggccaagataaggtgatttttagggtattttacctacattgtttatctcaaTACC--CC------C--TA-TAT---T---T---A--A---A--GG-T---------AAG--GGGT-AACT-TT-A--C--C---T----CCAA-TTT-T----GAAAAC----T-AA--GGG-----GT---A--aagttgctcttcaattacaaggtttctgaacaaaaatatgaaaagccttgtttaaaatacaagtaaaatgattttatattttggagacccatgtgtcttagaaagcaaatggaagtgtaaattacttagtttatataatattatgaaagtattaaaatttttaatttaaataaatgaaaaaatctgattttggcactaagtacgattttggtgtatcttacgactgtatgcttcactaccctcacctctgaaattctcaaagttaaatacccccatcttataaatttttggggtaaaataccctcttatcaataaagttatcttgag
gi|17 : ggcccagataaggtgattttgggggtattttaccctcatggtttagctaaaTACC--CC------A--AA-CTT---T---T---A--A---A--AG-T---------AAG--GGGT-AAAT-GC-AACT--C-C-T----TTTT-TTT-T----AAAACT----TAA---GGG-----GT---A--aagttactcttctcaaacaaaatttctatactgaaatatgaaaaaccttatttagaatgttacttatatcttgtagacccttgtaaattactaaacccaaatcatattatgtatgttaaagtacagtttttaactgaaatacataacaattctcaattttacaataaattataattttatcttaaacttaatgcttccttacccatatctctgaaaatctgggattgaatgccccct
gi|13 : aaaTATC--CC------T--TA-CTT---T---T---A--A---A--GG-T---------AAG--GGGT-AAAT-TT-A-----C-C-T----CCAA-TTT-T----GAAAAC----TAA---GGA-----GT---A--aagttacacctgcaaaacaaattttctgaaatgaaatataaaaaaccttgtttagaatacatgtataatgatttcatatcttggagacaaatgtgtcttagatagcaaaaaaaagtgtaaattactaaatctaaaaatattatataagtaagtcaagtttttaattgaaataaatgaagttctgaattttgcaataagtaagatt
gi|12 : cctcgtggtttagctaaaTACC--CC------A--GA-GCT---T------GG--G---A--AA-T---------A-A--GGAT-ATAT-TT-A--C--T-C-T----TTAT-CTT-T----TAAAGTGAGAT-G---GGT-----GT---A--AACTT-A-C------T-CCTTC-----CAA----A-------TATA----TCTTTCTGTTTCTATACT--------GA-----AA--AA-------T---GA---------TTGC-----TC----TGAAAA-acgttactcatcccaaacaaaatatctatactgaaatacgaaaaaccttgtttagaatgtatgacttatatcttgtagacccttgtaaattgctgaacctaaataatattatgtactggtatgttaaagtaaagttattaactgtcagaaatatatgaaaattctgaattttacaataaataatatttcatctttaactttaagcttccttacccatatctctgaaaatctcacactcccatttttactattttgggggt
gi|47 : CC--CC------AGATA-ACT---T---TT-AA--A---A--TA-A---------G-A--GGGT-AA-T-TT-A--C--C-C-tatttaccaaaataaaagtgattttataaatgaaataaaaaaaaattaggcgcgcacacaatatacttttactgtaaatgatcagtattacaatgaatctgagatcttgtgcctgtttatgcacatctttaaaactattggagtaaaatgctatcattgttttgattttatgggtaccttactccttcatcaaactgtatctgggactttggttaagta
gi|15 : ggC------A--TA-TTTCAGT---TC-AC--A---A--AA-TTTGTTTT--G-GAAGAGT-AACT-TT-A--A--C---T----TTAACTTT-T----AAAAGT----A-A---GGG-----GT---A--AAc
gi|46 : gtggcccagaaatgatgattttaggggtattttaccctcatgatttaactaaatacccctgagttttcaaaaaaatggatgcacaTT---T---TC-AT--A---A--T--T---------G-G--AGGT-AACT-TT-A--C--C-C-C----TTAC-CTT-A----AAAAGT----aaaaaccattaatacatttaaaatacacgtataatgatttcatatcttggagacccacttgtcttagatagaaagtgaatttataaatttctaaatctaaataatattatgtaaataagtaaagtttttaactgaaataaatgaaaattc
gi|22 : A-T---------G-G--GAGT-CAAT-TT-A--C--C-C-C----CTAG-TTT-C----AAAGG-----T-A---TGG-----G----A--AAGa
gi|47 : attagatgattatggtggcgaggaggggttgttagcctaatgatttagcttgatagttgttttaaaaaataggggcaaat---------G-G--GGGT-AAAT-T--A--C--C-C-T----CTTA-TTT-T----AAAAGT----T-ATCTGGG-----Gaaatgtatctgaattgtattgaaaaccgattacttaa
gi|2 : --GAGC-AACT-TT-A--C--T-C-C----TTAC-TTT-T----AAAAGT----A-A---GGG-----GT---A--AATTG-A----------C-CTC-----CA----------------A----T---TTTGA----AAACTAA------GG-----GG--TA-------TTGAGAT--AAACA-ATG------TA----GGTAAA-ATACCCTA--A----A--AAT--CACCT-------TA-TCTTGGc
gi|11 : gtgg--GAGT-AACT-TT-A--C--C-C-C----CTAT-ATT-T----AAAGGT----A-A---GGG-----GT---A--ACTTT-A----------C-CTC-----CAA----ttcaattacaaggtttctgaacaaaaatatgaaaagccttgtttaaaatacaagtaaaatgattttatattttggagacccatgtgtcttagaaagcaaatggaagtgtaaattacttagtttatataatattatgaaagtattaaaatttttaatttaaataaatgaaaaaatctgattttggcactaagtacgattttggtgtatcttacgactgtatgcttcactaccctcacctctgaaattctcaaagttaaatacccccatcttataaatttttggggtaaaataccctcttatcaataaagttatcttgag
gi|13 : ggcccagataaggtgattttgggggtattttaccctcatggtttagctaaataccccttagttttcaaaa--GAGT-AACG-TT-A--T--C-C-C----TTAC-TTT-T----AAAGGT----A-A---GGG-----GT---A--AATTT-A----------C-CTC-----CAA----ttctcaaacaaaatttctatactgaaatatgaaaaaccttatttagaatgttacttatatcttgtagacccttgtaaattactaaacccaaatcatattatgtatgttaaagtacagtttttaactgaaatacataacaattctcaattttacaataaattataattttatcttaaacttaatgcttccttacccatatctctgaaaatctgggattgaatgccccct
gi|23 : cctcgtggtttagctaaatactccttagttttcaaaa-TTT-T----AAAAGT------A---GAG-----GT---A--AAGTT-G-C------T-T-TTC-----TCA----AA----C-AAAA----T---TTCT-----AAACT--------GA-----AA--TA-------T---ATA--AAGCC-CTG------TT----TTAAAT-ACA---TG---------TAAT--Aatcccaaacaaaatatctatactgaaatacgaaaaaccttgtttagaatgtatgacttatatcttgtagacccttgtaaattgctgaacctaaataatattatgtactggtatgttaaagtaaagttattaactgtcagaaatatatgaaaattctgaattttacaataaataatatttcatctttaactttaagcttccttacccatatctctgaaaatctcacactcccatttttactattttgggggt
gi|16 : cacttacacatgt-----AAGTT--------GA-----AA--CA-------T---GAA--AAACC-TTG------TT----T--AGA-ATA---T------------AT--AACTTT-----ATA-TCTTTTAGACCCGTGTGTC------A-GGGTAACAAGTGA-------AATT--G-------T--TAAT--TAT-T-----TTA-TC-----TAAATAA------------T---AT----TA--TTA-TACAT--------A-----G---T------AAGTAA--T---GT-TTT----TTA------------------C-T----GA--AATAA-------AAGAA-------A----ATTCT--ctttatatat
gi|18 : cactcctcccaacaaTT------GTAGAAAACGAATGA-------AATCAAG-------T--CAAT--TAC-C-----TAA-TT-----TGA-TAA------------T---A-----TT--ATG-CA-----------A-----A---T------GAGCAA-------TGTTT----TAA------------------C-T----GA--AACAA-------ATTGA-------C----ATTCTGATATATTAATTATA--CTT----------AG--------gagttttacaagtagggttgtatcttagactgtttctttacctatgtctcagaaaatctgggagttaaatacccccattgtttccattttggggggtaaattaccctcatattaaaaaagttatctgggaca
gi|2 : aatgttccgtatataagatataatATGA-------AAGT--A-------TTAAAAT--T-T-T-----TAA-TT-----TAAATAAA-----------TGAAA-----AA--ATC-TG-----------ATTTTGGCACT------AAGTAC--G---AT-TTTGGTGTAT------------------C-T----TACGACTGT-------ATG-----------------CT--T-CACTACCCTCA--CCT----------CT--------GAAATTCTCAAAGT-TAAATA---C---CCC-CA-TCTT-ATAAA-TTTTTGGGGTAAAATACCCTCTTATCAATAA-AGTTATCTTGAGtgcaatagatagccatttacacttatcgttgaatatctgggagtaaaaggaattattatttccgttctagggccaaactatcctcttatcagacaacagctggggctctgttta
gi|5 : gtggccaagataaggtgatttttagggtattttacctacattgtttatctcaataccccttagttttcaaaattggaggtcaatttaccccttacttttaaaagtaaggagtaaagttgctcttcaattacaaggtttctgaacaaaaatatgaaaagccttgtttaaaatacaagtaaaatgattttatattttggagacccatgtgtcttagaaagcaaatggaagtgtaaattacttagtttatataatatt--T-CTTTACCAACA--TCT----------GG--------GA----------GT-TAAAT----C---CCT-CAAACTT-TTCCA-TTTGGGGGTTAAATTACTCT
gi|7 : agtggcccaggtaaagtgattttgggggtattttactctcatgctatagctaaatactcgctagtttttgaaaatggatgtaaattaacctttcaatttaaaagtaaggggtcaagttattcctctcaaacaaaatttttatatataaatacgagaaaccttgtttgaaatgtacgatattatatcttgtcgacctgtgtgtctagatagcaaatgaaattgtaatttacttacaataatctaaatcatattatgcaagcaggtaaagattttaaatgaaataaatgaaaaatttgaattttaataaataaaattgcaatgtatgtctgatgttatgca--T-CTTTACCAACA--TCT----------GG--------GA----------GT-TAAAT----C---CCT-CAAACTT-TTCCA-TTTGGGGGTTAAATTACTCT
gi|30 : agtggcccaggtaaagtgattttgggggtattttactctcatgctaaagcataatactcgctagtttttgataatggatgtaaattaacctttcaatttaaaagtaaggggtcaagttattcctctgaaacaaaatttctatacagaaatacgagaaaccttgtttgaaatgtatgacattatatcttgtcgacctgtgtgtctagatagcaaatgaaattgtacttacaataatctaaatcatattatgcaagcaggtaaagattttaaatgaaataaatgaaaaatttgaattttaataaataaaattgcaatgtatatctgttgttatgcaTTGCAAACCT----------GG--------GA----------GT-AAAA-A---TA--CCC-CA--CTTATTCAG-TTTAAGAGGTAAACTACCCTCTT-ATAAAA
gi|10 : A--TCT----------GG--------AA----------AT-TAAA-A---T---ACGACAATCTT-TTCCA-TTTTGGGTTTAAATTATTCTTTCATTAAAAtgatgcatttgatctggtgctct
gi|16 : ggttcagttaaatatcccataattttcaaatatgaagttaaatttaccacttatcataaaaagtagagacggtgttaactcctcccaaacaaaacttctgtactgatatttaaaaaaaaaatcgattgaaatatttaaaattatatcttgtagacccgtatatttagaaagccaatggcatggtaaattacttaatctaaaaaattgaaataaataaagaattttactgaaataaatgcaaattctgaattttgcaataaacaaaggttgcgaacaatctttgactttataagtctttacccatatctctgaaaA--TCT----------GG--------GA----------GT-TAAATA---C---CCC-CATTGTT-TCCAT-TTTGGGGGGTAAATTACCCTCATATTAAAAA-AGTTATCTGtgtcat
gi|21 : cactcctcccaacaaaagttgaaacatgaaaaaccttgtttagaatatataactttatatcttttagacccgtgtgtcagggtaacaagtgaaattgttaattattttatctaaataatattattatacatagtaagtaatgttttttactgaaataaaagaaaattctgagttttacaagtagggttgtatcttagactgtttctttacctatgtctcagaaaA--TCT----------GG--------GA----------GTAAAAATA---C---GCC-C-ACCTT-TACAT-TATTAGCAGTAAATTACCCTCATATCAATAA-A-TTATCTGGGGgaca
gi|3 : ttttaactagaacatacatgtgtaacacattagttttgattcatacattttcaaataatatagctagtgtttatattccttttctttaccctcgtgttcgtagCT----------GA--------GA----------GT-TGAATA---C---CCC-CA-TCTT-TTCAA-TTTTGGGGGTAAAATACTCTCTCA--AAAAA-AGATATCTGGActctg
gi|6 : ggcccagataaggtgatttggggggttttaccctcatgatttaactaaatatcccttagtttttaaaaaatggatgtaaatttacctcttttaaaagatggggataaagttactgttccaatacaaagtttcttttttgaaatatgaaaaagcttgtttaaactacatatataatgatttcatatcttggagacccacttgtcttaccggtaggtagcaaatgaaagtgtacattacttaatctaccttaaataatattatgtaagtaaagttttaactgatataaatgaaaattctgaattttgcactattaaagtagaattttgatatttctcatttctttatgcttcattaccctctactctgaaaaaT----------GA--------GA----------GT-TAAATAATGT---CGC-----TTT-TTCAT-CTTTGAGAATAAATTACCTTTGTAACAGGAA-A-TTATCTGGGG
gi|20 : cctagataaagttaatttgagtacattttactctcgtgaattagtttaaaatggcagtaaatttgacgcttttaaaaaaatggctgtgaaaaagtatcccttcattataaactgaaattttatattagtattatgaaaagttgtgtttaaaaaaaaaaatgattttactctaaaagacatatgaaataacctaagtttgaataacattatgtaagtaagaaagatctttaactgaaataaatagaaactctgatggaactgttcaatttgctgattgcgacggattattgctatatttaggctgtttacaaacatcttcaagtttaA----------GT-TAAATG-------CCC-TAAACTT-TTCCA-TTTTGAAGGTAAATTACTCTCTTGTTAAAAA-AAGTATATGGGGcg
gi|9 : attaaaataagattgcaatgtagccaagacttaatgcatctttgtccacatctcttaacatctcAAATA---T---CCC---ACCTG-TTAAAATTTTGGGGGTAAATAACCCTCTTAATAAAAATAG-TATCTcactgagcattaataaaatattatgacttttgaatgttaaattggtgtatttttaacaaaaaatgtgtttt
gi|36 : gtggcccagataaggtaattttgtgggtatattacccccaatatttagctaaataccccttagtttttaaaataaggggaacatttacccattttctttgaaaaaaatggggtatttagttaactccttccaaatattttcaacaaagatctgtgtaaaaaataggactttataatataaggaaaatgaaataaaagtaaactacataatttacgttatattatgtaactttaactgaaataaattgaaactgactgcaatgaatcttagatcttgtgcctattaacgccacagcttcaatagatcttgatgtaaAAATA---C---TCT-CACTTTT-TT-AA-TTTATGGAGTAAATTATTCCCATAACAAAAA-tgggcact
gi|28 : gggtaaATA---TGTACCC-CAATATT-GTCAA-TTTTTGGGGTAAATTACTCTTTTGTTTAAAT-AACTATCTGGGGcatacctggggctctg
gi|32 : actcttcgaaaattaaggagcTCTT-TTCAA-ATTTTGATGTAAAATACCTTCAT-ATAAAAA-A-TTATCTGcactg
gi|47 : agaaaatctggggacaaaagaacaatttGGGGTAAATTACCCTCTTATTTTAAA-AGTTATCTGGGGgcatt
10 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|26 ): AATTAATTAATTTAAACAATATCATGTATTTGATATGCAAGAGATTTTTAACTGAAATAAAGTAGTAAAACTCTGAAATTTCAATTTCCTGATTAC
Unaligned ( gi|33 ): GGAGTAAAATTAATCCCTCTATACCTTCTCACTTTATGAAGCAATCAACCCTGTTATCAATATAATTATCTGGGGCTCAGA
Unaligned ( gi|35 ): CTGAGAAATCCTCTGATTTCAAAACAAGTGTCAAACCCAGTCTTTGTTTATATTTTTGAATGTCCAAAATGTTTGTTT
Unaligned ( gi|37 ): TTAACTTAAAATATATGGAGGTAAATTTACTTCTCAAAATTCTTGGAAGAAAGTTTATATACTGAAATATG
Unaligned ( gi|40 ): ATCAATATACTAGGAAACTTATGCAAATGTCTACAGGAAAATAATTATCATAAATAGATGAAAATGA
Unaligned ( gi|41 ): AAGCAAAATATCCTTTTTTAAATTTTTGGGGTGAATTATCCTCTCATCAAAAGAATTATC
Unaligned ( gi|45 ): ATTATTTACAATAATCTAAATCATATTGCGCAAACAAGTAAAGGT
Unaligned ( gi|48 ): CTGAAATTGTCTCAATAATATCTGTTATCCATTTTTTGT
Unaligned ( gi|49 ): CCTTACCCGATCAATAATCTGTTGATTTCTTTTGCTT
Unaligned ( gi|50 ): AAAATCTTGAAGAACTTTAATGTTTTAAAGCAAATGT
Alignments
lowQualScore : 111111111111111 111111 333333333333333333333333333333333333333 1111111 2222222222222222 111 1111111 111111111 11111111111111 11111111111111111111111 11111111111111111 111111111 22222222222222222222 1111111111 1111111
lowQualScore : 22 111111111111111 1 1 5555555 1 1 1 1 2 666666 88 222 1 77 3 555 1 222 222222 44444 333 22 3 1 33 1 000000000000000000000000000000000000000 55555 22 6666666 77777777 22 77 55555 2 888888 8 1 7777777 22 2 6 2 5555555555555555 3 6666 2 77777 2 55555 6666666 2 2 000 5555555 2 333 44 666666666 2 4444 4444 77777777777777 55 33 888888888 2 99999999999999999999999 22222222222222222 4 4 8 3 222222222 11111111111111111111 0000000000 444 66666666 6 888888 3333333 1 1 0 4 999
lowQualScore : .. ............... . . ....... . . . . . ...... .. ... . .. . ... . ... ...... ..... ... .. . . .. . ....................................... ..... .. ....... ........ .. .. ..... . ...... . . ....... .. . . . ................ . .... . ..... . ..... ....... . . ... ....... . ... .. ......... . .... .... .............. .. .. ......... . ....................... ................. . . . . ......... .................... .......... ... ........ . ...... ....... . . . . ...
lowQualScore : 55 444444444444444 7 7 7777777 6 4 4 4 1 000000 77 666 5 66 2 444 7 999 888888 33333 000 44 3 7 99 7 777777777777777777777777777777777777777 00000 88 5555555 22222222 88 55 00000 0 555555 6 7 1111111 99 7 4 4 8888888888888888 6 9999 2 44444 1 33333 8888888 1 1 333 8888888 1 777 99 999999999 2 7777 7777 88888888888888 33 22 999999999 5 55555555555555555555555 55555555555555555 4 4 2 3 333333333 33333333333333333333 3333333333 111 99999999 3 555555 5555555 8 5 1 4 222
consensus : AGTGGCCCAGATAAGGTG--ATTT---------------TGG-GGG-T-------A-TTTTACCCTCATG-ATTTA-GCTAAAT-ACCCCTTA------GTTTTC-AAA---A-AA-TGGGGGT-AAATTTACCCCTTA-CTTT-T---AAAAGT----TGGGG-----GT---AA--AGTTA-C-TCC-T-CCAAAA----C-AANA----TTCCG-----AAA-CT--------GA-----AA--TA-------TGA--------A--AAACC--TTG-----TTT-A------AAATACATG----TATAA--TGATTTCATATCTTGNAGACCCGTGTGTC-------T-AGATAGCAAATGAAATT--GTAAAT-TACT-----TAA-TC-----TAAATAATA-------TTA-TG-TA---AGT-------AAGTAA-A---G-TTTT---------TAAC-T----GA----AA--------------TAAA--TG--AAA---------AT-T-----------------------CT-----------T-----CATTA-C-CCNC-AC---------CT----------GG--------GA----------G---TT-------AAA-T-----ACCCC-CAAT--CTTTTCAA-TTTTGGGGGTAAATTACCCTCTTATCAAAAA-AGT-TATCTGGGG
Reference ( family-1918 ) : AGTGGCCCAGATAAGGTG--ATTT---------------TGG-GGG-T-------A-TTTTACCCTCATG-ATTTA-GCTAAAT-ACCCCNTA------GTTTTC-AAA---A-AA-TGGGGGT-AAATTTACCCCTTA-NTTT-T---AAAAGT----TAGGG-----GT---AA--AGTTA-C-TCC-T-CCAAAA----C-TATA----TTCCG-----AAA-CT--------GA-----AA--TA-------TGA--------A--AAACC--TTG-----TTT-A------AAANACATG----NATAA--TGATTTCATATCTTGGAGACCCGTGTGTC-------T-AGATAGCAAATGAAATT--GTAAAT-TACT-----TAA-TC-----TAAATAATA-------TTA-TG-TA---AGT-------AAGTAA-A---G-TTTT---------TAAC-T----GA----AA--------------TAAA--TG--AAA---------AT-T-----------------------CT-----------T-----CATTA-C-CCGC-AC---------CT----------GG--------GA----------G---TT-------AAA-T-----ACCCC-CAAT--CTTTTCAA-TTTTGGGGGTAAATTACCCTCTTATCAAAAA-AGT-TATCTGGGG
gi|1 : AGTGGCCCCGATAAGGTG--ATTTGGGTGGTTGTGGGGTTGG-GGG-TGATGGGTA-TTTTACCCATATG-GTATA-GCTAAAT-ACCCCTTA------GTTTTC-AAA---A-A--TGGAGGT-GAATTTACATCTTA-CTTT-T---GAAAGT----TTGGG-----GT---AA--AGTTA-C-TCC-T-CCAA--------TATAAATTTTCTG-----AA--CT--------GA-----AA--TA-------TTA--------A--AACCC--TTG-----TTT-A------AAATACATG----TATAA--TGATTTCATATCTTGGACACCAATGTGTC-------TTAGATAGCAAATGAAAGT--GTAAAT-TACT-----TAA-TA-----CAAATGATAATTTTTATTA-TG-TA---AGT-------TAGTAA-A---G-TTTTTAATTGACATAAA-T----GA----AAATTC----------TGAA--TT--AAG---------AT-CTTAATGTATCTTACGACTGTATGCT-----------T-----CATTA-C-CCTC-AC---------CTCT--------GAAAATCTCAGA----------G---TA-------AAA-T-----ACCCC-CA-T--CTTTTCAA-TTTTGGGGGTAAAATACCCTCTTATCAATAA-AGT-TATCTG
gi|10 : G-GTTCA-GTTAAAT-ATCCCATA------ATTTTC-AAA---T-A--TGAAGTT-AAATTTACCACTTA-TCAT-A---AAAAGT-----AGAG-----AC---GG--TGTTAAC-TCC-T-CCCAAA----C-AAAA----CTTCT-----GTA-CT--------GA-----TA--TT-------TAA--------A--AAAAAAATCG-----ATT-G------AAATATTTA----AA-------ATT--ATATCTTGTAGACCCGTATATT-------T-AGAAAGCCAATGGCATG--GTAAAT-TACT-----TAA-TC-----TAAAAAAT------------TG--A---AAT-------AAATAA-A---G-AATT---------TTAC-T----GA----AA--------------TAAA--TG--CAA---------AT-T-----------------------CT-----------cagc
gi|10 : ---------CT----------GG--------AA----------A---TT-------AAAAT-----ACGAC--AAT--CTTTTCCA-TTTTGGGTTTAAATTATTCTTTCATTAAAAgaattttgcaataaacaaaggttgcgaacaatctttgactttataagtctttacccatatctctgaaaatctggaaattaaaatacgacaatcttttccattttgggtttaaattattctttcattaaaatgtcat
gi|11 : ggttcagttaaatatcccataattttcaaatatgaagttaaatttaccacttatcataaaaagtagagacggtgttaactcctcccaaacaaaacttctgtactgatatttaaaaaaaaaatcgattgaaatatttaaaattatatcttgtagacccgtatatttagaaagccaatggcatggtaaattacttaatctaaaaaattgaaataaataaagaattttactgaaataaatgcaaattctgaattttgcaataaacaaaggttgcgaacaatctttgactttataagtctttacccatatctctgaaaatGGCCCAGATAAGGTG--ATTT---------------TGG-GGG-T-------A-TTTTACCCTCATG-GTTTA-GCTAAAT-ACCCCTTA------GTTTTC-AAA---A-T--TGGAGGT-AAAGTTACCCCTTA-CCTT-T---AAATAT----AGGGG-----GT---AA--AGTTA-C-TCT-T-CTCAAA----C-AAAA----TTTCT-----ATA-CT--------GA-----AA--TA-------TGA--------A--AAACC--TTA-----TTT-A------GAA----TG-----------TTACTT-ATATCTTGTAGACCC-------------------------------TT--GTAAAT-TACT-----AAA-CC-----CAAATCATA-------TTA-TG-TA---TGTTA-----AAGTAC-A---G-TTTT---------TAAC-T----GA----AA--------------TACA--TA--ACA---------AT-T-----------------------CT-----------C-----AATTtgtcat
gi|12 : T-ACCCCAGA------GCTT---GGG---A-AA-TAAGGAT-ATATTTACTCTTTA-TCTT-T---TAAAGTGAGATGGGT-----GT---AA--ACTTA-C-TCCTT-CCAAA-------TATATCT-TTCTGTTTCTATA-CT--------GA-----AA--AA-------TGATTGCTCTGA--AAA-----TA-----TTT-ACC----AAA---ATA----AA-AG--TGATTTTATAttacaataaattataattttatcttaaacttaatgcttccttacccatatctctgaaaatctgggattgaatgccccct
gi|12 : G--------GA----------G---TA-------AAA-T-----GCTAT-CATT--GTTTT-GA-TTTTATGGGTACCTTACTCCTTCATCAAAC----TGTATCTGGGaatgaaataaaaaaaaattaggcgcgcacacaatatacttttactgtaaatgatcagtattacaatgaatctgagatcttgtgcctgtttatgcacatctttaaaactattggagtaaaatgctatcattgttttgattttatgggtaccttactccttcatcaaactgtatctgggactttggttaagta
gi|13 : taccccagagcttgggaaataaggatatatttactctttatcttttaaagtgagatgggtgtaaacttactccttccaaatatatctttctgtttctatactgaaaaatgattgctctgaaaatatttaccaaaataaaagtgattttataaatgaaataaaaaaaaattaggcgcgcacacaatatacttttactgtaaatgatcagtattacaatgaatctgagatcttgtgcctgtttatgcacatctttaaaactattCCTCGTG-GTTTA-GCTAAAT-ACTCCTTA------GTTTTC-AAA---A-T--TGGAGGT-AAATTTACCCCTTA-CCTT-T---AAAAGT----AAGGG-----AT---AA--CGTTA-C-TCA-T-CCCAAA----C-AAAA----TATCT-----ATA-CT--------GA-----AA--TA-------CGA--------A--AAACC--TTG-----TTT-A------GA----ATG----T---A--TGACTT-ATATCTTGTAGACCC-------------------------------TT--GTAAAT-TGCT-----GAA-CC-----TAAATAATA-------TTA-TG-TACT-GGTATGTTA-AAGTAA-A---G-TTAT---------TAAC-TGTCAGA----AA--------------TATA--TG--AAA---------AT-T-----------------------CT-----------actttggttaagta
gi|13 : -----------------------CT-----------T-----CCTTA-C-CCAT-AT---------CT----------CT--------GA-----------------------AAA-TCTCACACTCC-CA-T--TTTTACTA-TTTTGGGGGTgaattttacaataaataatatttcatctttaactttaagcttccttacccatatctctgaaaatctcacactcccatttttactattttgggggt
gi|14 : cctcgtggtttagctaaatactccttagttttcaaaattggaggtaaatttaccccttacctttaaaagtaagggataacgttactcatcccaaacaaaatatctatactgaaatacgaaaaaccttgtttagaatgtatgacttatatcttgtagacccttgtaaattgctgaacctaaataatattatgtactggtatgttaaagtaaagttattaactgtcagaaatatatgaaaattctgaattttacaataaataatatttcatctttaactttaag-TTTT--CCTCATG-GTTTA-GCTTAAT-ACCATTTT------GTTTAC-AAA---A-AA-TTGTATT-AAATCTACACTTTA-CTTTAT---AAA--T----TTGGG-----AT---AA--AA--A----------CAACA----C-AGTA----TCCTT-----AAA-GT--------GAGGGGTAAATTACTCCCTCTGA--------ATTAAATT--TTT-----TTTAA------AAAGACTTGTTAAAATAAATTGATTTTATATTTT-AAGAAAGG-------------T-AAATA--AAATCAAA----GTAAGTATACC-----TAA-TT-----TAAATAATA-------TTA-TGTTA---A---------AAGTTA-ACTTA-TTTT---------TAATAT----G-----AA--------------TAAA--T
gi|15 : tGTGGCCCAGAAATGATG--ATTT---------------TAG-GGG-T-------A-TTTTACCCTCATG-ATTTA-ACTAAAT-ACCCCTGA------GTTTTC-AAA---A-AAATGGATGC-ACATTTACCCCTTA-CTTT-T---AAAAGT----TAAAG-----TT---AA--AGTTA-C-TCT-T-CCAAAA----C-AA-A----TTTTGT----GAA-CT--------GA-----AA--TA-------TGA--------A--AAACCA-TTAATACATTT-A------AAATACACG----TATAA--TGATTTCATATCTTGGAGACCCACTTGTC-------TTAGATAGAAAGTGAATTT--ATAAAT-TTCT-----AAA-TC-----TAAATAATA-------TTA-TG-TA---AAT-------AAGTAA-A---G-TTTT---------TAAC-T----GA----AA--------------TAAA--TG--AAA---------AT-T-----------------------Cagtataggatatagatctgaattgtttaatgtactgattgta
gi|16 : A-C-TCC-T-CCCAA------------------CA-----AAAGTT--------GA-----AA--CA-------TGA--------A--AAACC--TTG-----TTT-A------GAATATATA-------------ACTTTATATCTTTTAGACCCGTGTGTC-------A-GGGTAACAAGTGAAATT--GTTAAT-TATT-----TTA-TC-----TAAATAATA-------TTATTA-TACATAGT-------AAGTAA-T---G-TTTT---------TTAC-T----GA----AA--------------TAAA--AG--AAA---------AT-T-----------------------CT-----------
gi|16 : c-AT---------CT----------GG--------GA----------G---TT-------AAA-T-----ACCCC-CATT--GTTTCCAT-TTTGGGGGGTAAATTACCCTCATATTAAAAA-AGT-TATCTGGGgagttttacaagtagggttgtatcttagactgtttctttacctatgtctcagaaaatctgggagttaaatacccccattgtttccattttggggggtaaattaccctcatattaaaaaagttatctgggaca
gi|17 : cactcctcccaacaaaagttgaaacatgaaaaaccttgtttagaatatataactttatatcttttagacccgtgtgtcagggtaacaagtgaaattgttaattattttatctaaataatattattatacatagtaagtaatgttttttactgaaataaaagaaaattctgagttttacaagtagggttgtatcttagactgtttctttacctatgtctcagaaaAAAT-ACCCCTTAA-----GTTTTA-AAA---A-AA-AAGGAGTTGCATTTACCCCTTA-CTTT-T---AAAAGT----TTGGG-----GT---AA--AGTTA-C-ACC-T-GCAAAA----CAAATT----TTCTG-----AAA--T--------GA-----AA--TA-------TAA--------A--AAACC--TTG-----TTT-A------GAATACATG----TATAA--TGATTTCATATCTTGGAGACAAATGTGTCT------T-AGATAGCAAAAAAAAGT--GTAAAT-TACT-----AAA-TC-----TAAA-AATA-------TTA-TA-TA---AGT-------AAGTCA-A---G-TTTT---------TAAT-T----GA----AA--------------TAAA--TG---AA---------GT-T-----------------------CT-----------aca
gi|18 : -------T-AGAAAACGAATGAAATCAAGTCAAT-TACC-----TAA-TT-----TGA-TAATA-------TTA-TG-CA---AAT-------GAGCAA-T---G--TTT---------TAAC-T----GA----AA--------------CAAA--TT--GAC---------AT-T-----------------------CT-----------gaattttgcaataagtaagatt
gi|18 : aatgttccgtatataagatataatttgTTTCCG-TTCTAGGGCCAAACTATCCTCTTATCAGACA-A---CAGCTGGGGgatatattaattatacttagtgcaatagatagccatttacacttatcgttgaatatctgggagtaaaaggaattattatttccgttctagggccaaactatcctcttatcagacaacagctggggctctgttta
gi|19 : aatgttccgtatataagatataatttgtagaaaacgaatgaaatcaagtcaattacctaatttgataatattatgcaaatgagcaatgttttaactgaaacaaattgacattctgatatattaattatacttagtgcaatagatagccatttacacttatcgttgaatatctgggagtaaaaggaattattaAGAGGTCTGGATAAGGTG--ATTG---------------TGG-TGG-T-------A-TTTTACC---ATG-ATTTA-GCTAATT-ACTCCTTA------GTTTGA-AAA---C-AA-TTGGGAT-ATATTTACCCCATAGCTTT-T---AAAACT----T--------------------TTA-C-TCCTT-CCAAAAGACTC-TATA----T--------------T--------GA-----AA--TA-------TGG--------T--TATTC--TTA-----TTT-ATTTATCAGATACATG----TATAA--TGA---CATActctgttta
gi|2 : ttaatttacaatacGTGGCCAAGATAAGGTG--ATTT---------------TTA-GGG-T-------A-TTTTACCTACATT-GTTTA-TCTCAAT-ACCCCTTA------GTTTTC-AAA---A-T--TGGAGGT-CAATTTACCCCTTA-CTTT-T---AAAAGT----AAGGA-----GT---AA--AGTTG-C-TCT-T-C---AA----T-TACAAGGTTTCTG------AA-CA--------AA-----AA--TA-------TGA--------A--AAGCC--TTG-----TTT-A------AAATACAAG----TAAAA--TGATTTTATATTTTGGAGACCCATGTGTCT------T-AGAAAGCAAATGGAAGT--GTAAAT-TACT-----TAG-TT-----TATATAATA-------TTA-TG-AA---AGT--------ATTAA-A---A-TTTT---------TAAT-T----TA----AA--------------TAAA--TG--AAA---------Aaaatgaactcaaaatacaaaatttgaacttgttatattatgta
gi|2 : -----------------------CT-----------T-----CACTA-C-CCTC-AC---------CT----------CT--------GAAATTCTCAAAG---TT-------AAA-T-----ACCCC-CA-T--CTTATAAA-TTTTTGGGGTAAAATACCCTCTTATCAATAA-AGT-TATCTaatctgattttggcactaagtacgattttggtgtatcttacgactgtatgcttcactaccctcacctctgaaattctcaaagttaaatacccccatcttataaatttttggggtaaaataccctcttatcaataaagttatcttgag
gi|20 : gtggccaagataaggtgatttttagggtattttacctacattgtttatctcaataccccttagttttcaaaattggaggtcaatttaccccttacttttaaaagtaaggagtaaagttgctcttcaattacaaggtttctgaacaaaaatatgaaaagccttgtttaaaatacaagtaaaatgattttatattttggagacccatgtgtcttagaaagcaaatggaagtgtaaattacttagtttatataatattatgaaagtattaaaatttttaatttaaataaatgaaaaaatctgattttggcactaagtacgattttggtgtatcttacgactgtatgA----------G---TT-------AAA-T-----GCCCT-AAA---CTTTTCCA-TTTTGAAGGTAAATTACTCTCTTGTTAAAAA-AAG-TATATGGGGtgag
gi|21 : attaaaataagattgcaatgtagccaagacttaatgcatctttgtccacatctcttaacatctc-AT---------CT----------GG--------GA----------G---TA-------AAAAT-----ACGCC-CA-C--CTTTACAT-TATTAGCAGTAAATTACCCTCATATCAATAA-A-T-TATCTGGGGcactgagcattaataaaatattatgacttttgaatgttaaattggtgtatttttaacaaaaaatgtgtttt
gi|22 : ttttaactagaacatacatgtgtaacacattagttttgattcatacattttcaaataatatagctagtgtttatattccttttctttaccctcgtgttcgtagG-GGG-T---------TGTTAGCCTAATG-ATTTA-GCTTGAT-A----GTT------GTTTT--AAA---A-AA-TAGGGGC-AAATCTTTCCCATA-CCTT-T---GAAACT----AGGGG-----GT---AA--ATTGA-C-TC----CCATAA----A-TGTA-----TCTG------AA-TT--------G----------TA-------TTG--------A--AAACCGATTA-----CTT-A------Actctg
gi|23 : attagatgattatggtggcgaggaTG-TTTT-T---AAAAGT-----AGAG-----GT---AA--AGTTG-C-TTT-T-CTCAAA----C-AAAA----TTTCT-----AAA-CT--------GA-----AA--TA-------TAT--------A--AAGCC--CTG-----TTT-T------AAATACATG------TAA--T-ACTTTATAT
gi|24 : cacttacacaATAAAGTG--ACTT---------------TGG----------------------CTCATG-ATTAA-GCTAAAT-ACCCAA-A------GTTTTC-AAAGGTA-AA----GGAT-AAACTat
gi|25 : ccagatttCATG-ATTTA-GCTAAAT-ACCTCTAA------GTT-----AA---A-AA-TTGGACC-AAATTTACC----A-AACT-T---AAAAAC----TTGGG-----GT---AA--ATATA-C-CCA-T-Caattcttcccaaagtttctatactggactata
gi|26 : ccaataaggtggtattgAAT-TAAT-----TAA-TT-----TAAACAATA-------TCA-TG-TATTTGAT-------ATGCAAGA---GATTTT---------TAAC-T----GA----AA--------------TAAAG-TAGTAAA---------AC-T-----------------------CT-----------
gi|27 : -TTTTACCCCAATG-ATTTA-ACTA----------TA--------TTT---AA---A-AC-TGGG--T-GAATTTACCTCTTA-CATT-T---AAAAG-----CAGGGAGAACAT---AA--TGATA-CTTCT-T-CCAAAgaaatttcaatttcctgattac
gi|28 : CCC-CAAT--ATTGTCAA-TTTTTGGGGTAAATTACTCTTTTGTTTAAAT-AAC-TATCTGGGGta
gi|29 : actcttcgaaaattaaggagcatatgtaAAATAAGTTG--GTTT---------------TTG-GAG-T-------AGTTTTACC-TCCTG-ATTTA-AGTAAAT-ACCTCTTA------GTTGTCTTGA---A-AA-TGTGGGT-AAATTTTCTTCTTcactg
gi|3 : atGGCCCAGATAAGGTG--ATTT---------------GGG-GGG-T----------TTTACCCTCATG-ATTTA-ACTAAAT-ATCCCTTA------GTTTTT-AAA---A-AA-TGGATGT-AAATTTACCTCTT-----T-T---AAAAGA----TGGGG-----AT---AA--AGTTA-C-TGT-T-CCAATA----C-AAAG----TTTCT-----TTT-TT--------GA-----AA--TA-------TGA--------A--AAAGC--TTG-----TTT-A------AACTACATA----TATAA--TGATTTCATATCTTGGAGACCCACTTGTCTTACCGGT-AGGTAGCAAATGAAAGT--GTACAT-TACT-----TAA-TCTACCTTAAATAATA-------TTA-T--------GT-------AAGTAA-A---G--TTT---------TAAC-T----GA----TA--------------TAAA--TG--AAA---------AT-T-----------------------CT-----------
gi|3 : TAAAGTAGAATTT---------------TGA-----T-------A-TTT----CTCATTTCTTTATGCTTCATTACCCTCTA-------CTCTG-AAA---A-AC-TGAGAGTTGAAT--ACCCCCAT-CTTT-T---CAATTT----TGGGG-----GT---AA--AA-TA-C-TCT-C-TCAAAA----gaattttgcactattaaagtagaattttgatatttctcatttctttatgcttcattaccctctactctgaaaaactgagagttgaatacccccatcttttcaattttgggggtaaaatactctctcaaaaaaagatatctgga
gi|3 : ggcccagataaggtgatttggggggttttaccctcatgatttaactaaatatcccttagtttttaaaaaatggatgtaaatttacctcttttaaaagatggggataaagttactgttccaatacaaagtttcttttttgaaatatgaaaaagcttgtttaaactacatatataatgatttcatatcttggagacccacttgtcttaccggtaggtagcaaatgaaagtgtacattacttaatctaccttaaataatattatgtaagtaaagttttaactgatataaatgaaaattctgaattttgcactat---------AT-G-----------------------CT-----------T-----CATTA-C-CCTCTACTCTGAAAAACT----------GA--------GA----------G---TT-------GAA-T-----ACCCC-C-AT--CTTTTCAA-TTTTGGGGGTAAAATACTCTCTCA--AAAAA-AGA-TATCTGGaaagatatctgga
gi|30 : ggcccagataaggtgatttggggggttttaccctcatgatttaactaaatatcccttagtttttaaaaaatggatgtaaatttacctcttttaaaagatggggataaagttactgttccaatacaaagtttcttttttgaaatatgaaaaagcttgtttaaactacatatataatgatttcatatcttggagacccacttgtcttaccggtaggtagcaaatgaaagtgtacattacttaatctaccttaaataatattatgtaagtaaagttttaactgatataaatgaaaattctgaattttgcactattaaagtagaattttgatatttctcatttcttt-AC---------CT----------GG--------GA----------G---TA-------AAAAT-----ACCCC---AC--TTATTCAG-TTTAAGAGGTAAACTACCCTCTTATAAAAa
gi|31 : ttgcaaGACCCAGACAATGTG--ATCT---------------TGT-GAA-C-------A-CTTTATATCCATA-ATTTA-ACTAAAT-ACCTTTCT------GATTT--AGA---A-AA-TGGGGAT-ATAATTACCtgatgcatttgatctggtgctct
gi|32 : T--CTTTTCAA-ATTTTGATGTAAAATACCTTCATAT--AAAA-AAT-TATCTGGG
gi|33 : agaaaatctggggacaaaagaacaatttG--------GA----------G---TA-------AAA-TTA---ATCCCTCTATACCTTCTCAC-TTTATGAAGCAATCAACCCTGTTATCAATAT-AAT-TATCTGGGGcatt
gi|34 : AGGCAAGATA--ATTT---------------TGGTGGG-T-------A-TTT-ATCCGCATG-ATTCA-GCTAAAT-Actcaga
gi|36 : agatttca-------AAA-T-----ACTCT-CACT--TTTTT-AA-TTTATGGAGTAAATTATTCCCATAACAAAAACA---TACCTGGGGgtaaataaattatatcaaaaaa
gi|38 : gggtaaGGCCCAGATTAGGTG--ATTT---------------C-G-AGG-T-------A-CTTGACTCCAAAG-ACGTA-GCTATAT-ATCCATTG------GTTAT---AA---A-AA-Tctctg
gi|39 : GGCCAAGATAATGTG--GTTT---------------TCG-GGA-T-------A-TTTTATCGTCATG-ATTTA-GCTTAAT-A-TCTGTA------GTTTTG-AAA---A-t
gi|4 : gaAGTGGCCAAGATAATGTC--ATTT---------------TGG-GGGGT-------A-TTTTACCCTCATT-GTTTA-GCTAAAT-ACCACTTACATGTAGTTTTA-AAA---A-AA-TGGAGGT-AAATTTACCCCTTA-CTTT-T---ATAAGT----TGGGG-----GT---AA--AGTTA-C-TCC-T-CCAATA----C-AAAT----TTTCT-----AAA-CT--------GA-----AA--TG-------TGA--------A--AAACT--TTG-----TTT-A------AAATACATG----TATAA--TGATTTCATATCTTGGAGACCCATGTGTCT------T-AGATAGCAAATGAAAGT--TTAAAT-TACT-----TTA-TC-----TAAATAATA-------CTA-TT-TA---AGT-------AAGT---A---G-TTTT---------TAAC-T----AA----AA--------------TATA--TA--AAA---------AT-T-----------------------CT-----------
gi|4 : -----------------------CT-----------T-----CATTA-C-CCTC-AC---------CTCTGAAAATCTGG--------GA----------G---TT-------AAA-T-----------------CTTTTCAA-TTTTTGGAGTAAAATACCCTCTTATCAAAAA-TGT-TATCTGGAGgattaagtaagatttttaatgtattaatgtatgcttcattaccctcacctctgaaaatctgggagttaaatcttttcaatttttggagtaaaataccctcttatcaaaaatgttatctggagc
gi|41 : agtggccaagataatgtcattttggggggtattttaccctcattgtttagctaaataccacttacatgtagttttaaaaaaatggaggtaaatttaccccttacttttataagttgggggtaaagttactcctccaatacaaattttctaaactgaaatgtgaaaaactttgtttaaaatacatgtataatgatttcatatcttggagacccatgtgtcttagatagcaaatgaaagtttaaattactttatctaaataatactatttaagtaagtagtttttaactaaaatatataaaaattctgattaagtaagatttttaatgtattaatgtatg-------AAA-T-----ATCC-----T--TTTTTAAA-TTTTTGGGGTGAATTATCCTCTCATCAAAAG-AAT-TATCc
gi|42 : aagcaGTG--ATTC---------------TGG-GGG-T-------A-ATTTATCCTCATG-GTTTA-GCTAAAT-
gi|43 : tgaaccgaacataCCAGATAATATG--TTTT---------------TTA-GAG-T-------A-TTT-ACCCTGATG-ATTAA-ATCGAAT-ACC
gi|44 : GTGGCCAAGATAAGCTG--ATTT---------------TGT-GTG-T-------A-TTCTACCCTCATC-ATTTA-
gi|45 : -----TAA-TC-----TAAATCATA-------TTG-CG-CA---AAC-------AAGTAA-A---G-cc
gi|46 : attatttacaaTTTTC-ATA---A-T--TGGAGGT-AACTTTACCCCTTA-CCTT-A---AAAAGT----gt
gi|46 : TA-CTTT-T---TAAGGT----AAGGG-----GT---AA--AGTTA----CC-T-CCAAa
gi|47 : ttttcataaGGGGGTAAATTACCCTCTTATTTTAAA-AGT-TATCTGGGG
gi|5 : AGTGGCCCAGGTAAAGTG--ATTT---------------TGG-GGG-T-------A-TTTTACTCTCATG-CTATA-GCTAAAT-ACTCGCTA------GTTTTT--GA---A-AA-TGGATGT-AAATTAACCTTTCA-A-TT-T---AAAAGT----AAGGG-----GT---CA--AGTTA-T-TCC-T-CTCAAA----C-AAAA----TTTTT-----ATA-TA--------TA-----AA--TA-------CGA--------G--AAACC--TTG-----TTT-G------AA----ATG----TACGA--T-ATT--ATATCTTGTCGACCTGTGTGTC-------T-AGATAGCAAATGAAATT--GTAATT-TACTTACAATAA-TC-----TAAATCATA-------TTA-TG-CA---AGC-------AGGTAA-A---G-ATTT---------TAAA-T----GA----AA--------------TAAA--TG--AAA---------Ac
gi|5 : -----------T-----CTTTA-C-CAAC-AT---------CT----------GG--------GA----------G---TT-------AAA-T------CCCT-CAAA--CTTTTCCA-TTTGGGGGTTAAATTACTCTatttgaattttaataaataaaattgcaatgtatgtctgatgttatgcatctttaccaacatctgggagttaaatccctcaaacttttccatttgggggttaaattactct
gi|6 : agtggcccaggtaaagtgattttgggggtattttactctcatgctatagctaaatactcgctagtttttgaaaatggatgtaaattaacctttcaatttaaaagtaaggggtcaagttattcctctcaaacaaaatttttatatataaatacgagaaaccttgtttgaaatgtacgatattatatcttgtcgacctgtgtgtctagatagcaaatgaaattgtaatttacttacaataatctaaatcatattatgcaagcaggtaaagattttaaatgaaataaatgaaaaatttgaattttaataaataaaattgcaatgtatgtctgatgttatgcaCCTAGATAAAGTT--AATT---------------TGA-GTA-C-------A-TTTTACTCTCGTG-A----------AT-------TA------GTTT-----A---A-AA-TGGCAGT-AAATTTGACGCTT----TT-A---AAAAAA----TGGCT-----GTGAAAA--AGT-A-T-CCC-T-TCA-------T-TATA----AACTG-----AAA-TTTTATATTAGT-----AT--TA-------TGA--------A--AAGTT--GTG-----TTT-A------AAAAA--------AAAAA--TGATTTTAC-TCTAAAAGAC--------------------ATA-----TGAAAT-------A---ACC-----TAAGTT-----TGAATAACA-------TTA-TG-TA---AGT-------AAGAAA-G---A-TCTT---------TAAC-T----GA----AA--------------TAAA--TA--GAA---------AC-T-----------------------CT-----------
gi|6 : T----------GA--------GA----------G---TT-------AAA-T-----AATGT-CGCT---TTTTCAT-CTTTGAGAATAAATTACCTTTGTAACAGGAA-A-T-TATCTGGGGgatggaactgttcaatttgctgattgcgacggattattgctatatttaggctgtttacaaacatcttcaagtttatgagagttaaataatgtcgctttttcatctttgagaataaattacctttgtaacaggaaattatctggggcg
gi|7 : cctagataaagttaatttgagtacattttactctcgtgaattagtttaaaatggcagtaaatttgacgcttttaaaaaaatggctgtgaaaaagtatcccttcattataaactgaaattttatattagtattatgaaaagttgtgtttaaaaaaaaaaatgattttactctaaaagacatatgaaataacctaagtttgaataacattatgtaagtaagaaagatctttaactgaaataaatagaaactctgatggaactgttcaatttgctgattgcgacggattattgctatatttaggctgtttacaaacatcttcaagtttaAGTGGCCCAGGTAAAGTG--ATTT---------------TGG-GGG-T-------A-TTTTACTCTCATG-CTAAA-GCATAAT-ACTCGCTA------GTTTTT-GAT---A-A--TGGATGT-AAATTAACCTTTCA-ATTT-----AAAAGT----AAGGG-----GT---CA--AGTTA-T-TCC-T-CTGAAA----C-AAAA----TTTCT-----ATA-CA--------GA-----AA--TA-------CGA--------G--AAACC--TTG-----TTT-G------AAA----TG----TATGA--C-ATT--ATATCTTGTCGACCTGTGTGTC-------T-AGATAGCAAATGAAATT--GTAC-T-TACAA----TAA-TC-----TAAATCATA-------TTA-TG-CA---AGC-------AGGTAA-A---GATTTTAAATGAAA-TAAA-T----GA----AAAATTTGAATTTTAATAAA--TA--AAATTGCAATGTATAT-----------------------CTGTTGTTATGCAT-----CTTTA-C-CAAC-AT---------CT----------GG--------GA----------G---TT-------AAA-T------CCCT-CAAA--CTTTTCCA-TTTGGGGGTTAAATTACTCTcg
gi|8 : AGAGGCCCAGATAAGGTA--ATTT---------------TGG-GGG-T-------A-TTTTACCCACATG-ATTTA-ACTAAAT-ACCCCATA------GTTTTC-AAA---A-AA-TGGGGGT-AAATTTACCCTTTA-ATTT-T---AAAAGT----TAGGG-----GT---AA--AGTTA-C-TCT-T-CCAAAA----T-TATA----TTCCG-----AAA-CT--------GA-----AA--TA-------TGA--------A--AAACC--TTG-----TAT-G------AAAAACATG----AATAA--TAAGTTGGTATCTTGGAGACCCACGTGTCG------T-AGATAGCAAATGAAACT--GTAAAT-TACT-----TAA-TC-----TAAATAATA-------CAA-TG-TA---AGT-------AAGTAA-A---A-TTTT---------TAAC-T----GA----AT--------------TAAA--TG--AAA---------AT-T-----------------------CT-----------T-----CATTA-C-TTGC-AC---------CT----------GG--------GA----------G---TT-------AAA-T-----ATCCC-CAAT--CTTTTCAA-TTTTCGGGGTAAAATACCCTCTTAACAAAAA-AGT-TATCTAGAG
gi|9 : GTGGCCCAGATAAGGTA--ATTT---------------TGT-GGG-T-------A-TATTACCCCCAAT-ATTTA-GCTAAAT-ACCCCTTA------GTTTTT-AAA---ATAA---GGGGA-ACATTTACCCATTT-TCTT-TGAAAAAAAT------GGG-----GT---ATTTAGTTAAC-TCC-TTCCAAA-------TATT----TTC--------AA-C-------------------------------A--------A--AGATC--T-G-----TGT-A------AAAAATA-G------------GACTTTATAATATAAGGA-------------------AAATG--AAATAAAA----GTAAAC-TACA-----TAA-TT-----TACGTTATA-------TTA-TG-TA---ACTTTAACTGAAATAA-A------TTG---------AAAC-T----GACTGCAA--------------TGAATCTT--AGA------------T-----------------------CT-----------TGTGCCTATTAACGCCAC-AG---------CTTC--------AA--------TA----------GATCTTGATGTAAAAA-T-----ATCCC---AC--CTGTTAAAATTTTGGGGGTAAATAACCCTCTTAATAAAAATAG--TATCTTGGG
6 sequences could not be aligned to this reference sequence:
Unaligned ( gi|35 ): CTGAGAAATCCTCTGATTTCAAAACAAGTGTCAAACCCAGTCTTTGTTTATATTTTTGAATGTCCAAAATGTTTGTTT
Unaligned ( gi|37 ): TTAACTTAAAATATATGGAGGTAAATTTACTTCTCAAAATTCTTGGAAGAAAGTTTATATACTGAAATATG
Unaligned ( gi|40 ): ATCAATATACTAGGAAACTTATGCAAATGTCTACAGGAAAATAATTATCATAAATAGATGAAAATGA
Unaligned ( gi|48 ): CTGAAATTGTCTCAATAATATCTGTTATCCATTTTTTGT
Unaligned ( gi|49 ): CCTTACCCGATCAATAATCTGTTGATTTCTTTTGCTT
Unaligned ( gi|50 ): AAAATCTTGAAGAACTTTAATGTTTTAAAGCAAATGT
Alignments
lowQualScore : 111111111111111 1111111111 2222222222222222 1111111 222222222 11111111111111 11111111111111111111111 11111111111111111 2222222222222222222222222222222222222222222 1111111111 1111111
lowQualScore : 22 111111111111111 1 1 5555555 1 1 1 1 666666 88 222 1 77 3 3 1 1 222 222 77 22 3333 333 22 3 1 44 3333 1 3 55 3 9999999999 2 55555 22 6666666 77777777 22 77 55555 6666666666 1 6666666666 5555 4 1 5555555555555555 3 6666 33 2 77777 2 55555 99999999999 2 6666666 2 22 999 5555555 2 333 44 000000000 2 4444 7777 66666666666666 2 4444444 888888888 2 88888888888888888888888 11111111111111111 0 4 4 1 2222222222222222222222222222222222222222222 0000000000 444 66666666 6 888888 3333333 1 1 0 4 999
lowQualScore : .. ............... . . ....... . . . . ...... .. ... . .. . . . . ... ... .. .. .... ... .. . . .. .... . . .. . .......... . ..... .. ....... ........ .. .. ..... .......... . .......... .... . . ................ . .... .. . ..... . ..... ........... . ....... . .. ... ....... . ... .. ......... . .... .... .............. . ....... ......... . ....................... ................. . . . . ........................................... .......... ... ........ . ...... ....... . . . . ...
lowQualScore : 55 444444444444444 7 7 7777777 6 4 4 4 000000 77 666 5 66 2 5 0 7 999 999 33 55 9999 222 55 5 7 55 9999 8 8 22 8 1111111111 0 00000 88 5555555 22222222 88 55 00000 5555555555 4 0000000000 4444 6 0 8888888888888888 6 9999 11 1 00000 0 00000 55555555555 0 5555555 0 11 888 0000000 0 555 22 555555555 1 5555 4444 88888888888888 1 8888888 444444444 2 55555555555555555555555 00000000000000000 3 0 0 0 2222222222222222222222222222222222222222222 3333333333 111 99999999 3 555555 5555555 8 5 1 4 222
consensus : AGTGGCCCAGATAAGGTG--ATTT---------------TGG-GGG-T-------A-TTTTACCCTCATG-ATTTA-GCTAAAT-ACCCCTTA------GTTTTC-AAA---A-AA-TGGGGGT-AAATTTACCCCTTA-CTTT-T---AAA---AGTTGGG--GG----T---AA--AGTTA-C-TCC-TCCA----AA-AC-AAAAT-TTCT-----ANACT-GA-----AA--TA-------TGA--------A--AAACC--TTG-----TTT---A------AAATACATGT----ATAA--TGATTTCATATCTTGNAGACCCGTGTGTC-------T-AGATAGCAAATGAAATT--GT--AAAT-TACT-----TAA-TC-----TAAATAA-----------T-A-------TTA-TG-TA---AGT-------AAGTAA-A---G-TTTT---------TAAC-T----GA----AA--------------TAAA-T----G--AAA---------AT-T-----------------------CT-----------T-----CATTA-C-CCNC----------AC---------CT----------GG--------GA----------G---TT-------AAA-T-----ACCCC-CAAT--CTTTTCAA-TTTTGGGGGTAAATTACCCTCTTATCAAAAA-AGT-TATCTGGGG
Reference ( family-1918 ) : AGTGGCCCAGATAAGGTG--ATTT---------------TGG-GGG-T-------A-TTTTACCCTCATG-ATTTA-GCTAAAT-ACCCCTTA------GTTTTC-AAA---A-AA-TGGGGGT-AAATTTACCCCTTA-CTTT-T---AAA---AGTTGGG--GG----T---AA--AGTTA-C-TCC-TCCA----AA-AC-AANAT-TCCG-----AAACT-GA-----AA--TA-------TGA--------A--AAACC--TTG-----TTT---A------AAATACATGT----ATAA--TGATTTCATATCTTGNAGACCCGTGTGTC-------T-AGATAGCAAATGAAATT--GT--AAAT-TACT-----TAA-TC-----TAAATAA-----------T-A-------TTA-TG-TA---AGT-------AAGTAA-A---G-TTTT---------TAAC-T----GA----AA--------------TAAA-T----G--AAA---------AT-T-----------------------CT-----------T-----CATTA-C-CCNC----------AC---------CT----------GG--------GA----------G---TT-------AAA-T-----ACCCC-CAAT--CTTTTCAA-TTTTGGGGGTAAATTACCCTCTTATCAAAAA-AGT-TATCTGGGG
gi|1 : AGTGGCCCCGATAAGGTG--ATTTGGGTGGTTGTGGGGTTGG-GGG-TGATGGGTA-TTTTACCCATATG-GTATA-GCTAAAT-ACCCCTTA------GTTTTC-AAA---A-A--TGGAGGT-GAATTTACATCTTA-CTTT-T---GAA---AGTTTGG--GG----T---AA--AGTTA-C-TCC-TCCA----AT-AT-AAATT-TTCT-----GAACT-GA-----AA--TA-------TTA--------A--AACCC--TTG-----TTT---A------AAATACATGT----ATAA--TGATTTCATATCTTGGACACCAATGTGTC-------TTAGATAGCAAATGAAAGT--GT--AAAT-TACT-----TAA-TA-----CAAATGA-----------T-AATTTTTATTA-TG-TA---AGT-------TAGTAA-A---G-TTTTTAATTGACATAAA-T----GA----AAATTC----------TGAA-T----T--AAG---------AT-CTTAATGTATCTTACGACTGTATGCT-----------T-----CATTA-C-CCTC----------AC---------CTCT--------GAAAATCTCAGA----------G---TA-------AAA-T-----ACCCC-CA-T--CTTTTCAA-TTTTGGGGGTAAAATACCCTCTTATCAATAA-AGT-TATCTG
gi|10 : G-GTTCA-GTTAAAT-ATCCCATA------ATTTTC-AAA---T-A--TGAAGTT-AAATTTACCACTTA-TCAT-A---AAA---AGTAGAGACGG----T--------GTTAAC-TCC-TCCC----AA-AC-AAAAC-TTCT-----GTACT-GA-----TA--TT-------TAA--------A--AAAAAAATCG-----ATT---G------AAATA----T----TTAA---AATT--ATATCTTGTAGACCCGTATATT-------T-AGAAAGCCAATGGCATG--GT--AAAT-TACT-----TAA-TC-----TAAAAAA-----------T-------------TG--A---AAT-------AAATAA-A---G-AATT---------TTAC-T----GA----AA--------------TAAA-T----G--CAA---------AT-T-----------------------CT-----------cagc
gi|10 : ---------CT----------GG--------AA----------A---TT-------AAAAT-----ACGAC--AAT--CTTTTCCA-TTTTGGGTTTAAATTATTCTTTCATTAAAAgaattttgcaataaacaaaggttgcgaacaatctttgactttataagtctttacccatatctctgaaaatctggaaattaaaatacgacaatcttttccattttgggtttaaattattctttcattaaaatgtcat
gi|11 : ggttcagttaaatatcccataattttcaaatatgaagttaaatttaccacttatcataaaaagtagagacggtgttaactcctcccaaacaaaacttctgtactgatatttaaaaaaaaaatcgattgaaatatttaaaattatatcttgtagacccgtatatttagaaagccaatggcatggtaaattacttaatctaaaaaattgaaataaataaagaattttactgaaataaatgcaaattctgaattttgcaataaacaaaggttgcgaacaatctttgactttataagtctttacccatatctctgaaaatGGCCCAGATAAGGTG--ATTT---------------TGG-GGG-T-------A-TTTTACCCTCATG-GTTTA-GCTAAAT-ACCCCTTA------GTTTTC-AAA---A-T--TGGAGGT-AAAGTTACCCCTTA-CCTT-T---AAA---TATAGGG--GG----T---AA--AGTTA-C-TCT-TCTC----AA-AC-AAAAT-TTCT-----ATACT-GA-----AA--TA-------TGA--------A--AAACC--TTA-----TTT---A------GA----ATGT-----TA-------CTTATATCTTGTAGACCC-------------------------------TT--GT--AAAT-TACT-----AAA-CC-----CAAATCA-----------T-A-------TTA-TG-TA---TGTTA-----AAGTAC-A---G-TTTT---------TAAC-T----GA----AA--------------TACA-T----A--ACA---------AT-T-----------------------CT-----------C-----AATTtgtcat
gi|12 : T-ACCCCAGA------GCTT---GGG---A-AA-TAAGGAT-ATATTTACTCTTTATCTTT-T---AAAGTGAGATGGG--TG----T---AA--ACTTA-C-TCCTTCCA----AATAT-ATCTT-TCTGTTTCTATACT-GA-----AA--AA-------TGATTGCTCTGA--AAA-----TA-----TTTACCA------AAATAAA---------AG--TGATTTTATAttacaataaattataattttatcttaaacttaatgcttccttacccatatctctgaaaatctgggattgaatgccccct
gi|12 : G--------GA----------G---TA-------AAA-T-----GCTAT-CATT--GTTTT-GA-TTTTATGGGTACCTTACTCCTTCATCAAAC----TGTATCTGGGaatgaaataaaaaaaaattaggcgcgcacacaatatacttttactgtaaatgatcagtattacaatgaatctgagatcttgtgcctgtttatgcacatctttaaaactattggagtaaaatgctatcattgttttgattttatgggtaccttactccttcatcaaactgtatctgggactttggttaagta
gi|13 : taccccagagcttgggaaataaggatatatttactctttatcttttaaagtgagatgggtgtaaacttactccttccaaatatatctttctgtttctatactgaaaaatgattgctctgaaaatatttaccaaaataaaagtgattttataaatgaaataaaaaaaaattaggcgcgcacacaatatacttttactgtaaatgatcagtattacaatgaatctgagatcttgtgcctgtttatgcacatctttaaaactattCCTCGTG-GTTTA-GCTAAAT-ACTCCTTA------GTTTTC-AAA---A-T--TGGAGGT-AAATTTACCCCTTA-CCTT-T---AAA---AGTAAGG--GA----T---AA--CGTTA-C-TCA-TCCC----AA-AC-AAAAT-ATCT-----ATACT-GA-----AA--TA-------CGA--------A--AAACC--TTG-----TTT---A------GA----ATGT-------A--TGACTT-ATATCTTGTAGACCC-------------------------------TT--GT--AAAT-TGCT-----GAA-CC-----TAAATAA-----------T-A-------TTA-TG-TACT-GGTATGTTA-AAGTAA-A---G-TTAT---------TAAC-TGTCAGA----AA--------------TATA-T----G--AAA---------AT-T-----------------------CT-----------actttggttaagta
gi|13 : -----------------------CT-----------T-----CCTTA-C-CCAT----------AT---------CT----------CT--------GA-----------------------AAA-TCTCACACTCC-CA-T--TTTTACTA-TTTTGGGGGTgaattttacaataaataatatttcatctttaactttaagcttccttacccatatctctgaaaatctcacactcccatttttactattttgggggt
gi|14 : cctcgtggtttagctaaatactccttagttttcaaaattggaggtaaatttaccccttacctttaaaagtaagggataacgttactcatcccaaacaaaatatctatactgaaatacgaaaaaccttgtttagaatgtatgacttatatcttgtagacccttgtaaattgctgaacctaaataatattatgtactggtatgttaaagtaaagttattaactgtcagaaatatatgaaaattctgaattttacaataaataatatttcatctttaactttaag-TTTT--CCTCATG-GTTTA-GCTTAAT-ACCATTTT------GTTTAC-AAA---A-AA-TTGTATT-AAATCTACACTTTA-CTTTAT---AAA-----TTTGG--GA----T---AA--AA--A---------CA----AC-AC-AGTAT-CCTT-----AAAGT-GAGGGGTAAATTACTCCCTCTGA--------ATTAAATT--TTT-----TTTA--A------AAAGACTTGTTAAAATAAATTGATTTTATATTTT-AAGAAAGG-------------T-AAATA--AAATCAAA----GT--AAGTATACC-----TAA-TT-----TAAATAA-----------T-A-------TTA-TGTTA---A---------AAGTTA-ACTTA-TTTT---------TAATAT----G-----AA--------------TAAA-T----
gi|15 : tGTGGCCCAGAAATGATG--ATTT---------------TAG-GGG-T-------A-TTTTACCCTCATG-ATTTA-ACTAAAT-ACCCCTGA------GTTTTC-AAA---A-AAATGGATGC-ACATTTACCCCTTA-CTTT-T---AAA---AGTTAAA--GT----T---AA--AGTTA-C-TCT-TCCA----AA-AC-AA-AT-TTTGT----GAACT-GA-----AA--TA-------TGA--------A--AAACCA-TTAATACATTT---A------AAATACACGT----ATAA--TGATTTCATATCTTGGAGACCCACTTGTC-------TTAGATAGAAAGTGAATTT--AT--AAAT-TTCT-----AAA-TC-----TAAATAA-----------T-A-------TTA-TG-TA---AAT-------AAGTAA-A---G-TTTT---------TAAC-T----GA----AA--------------TAAA-T----G--AAA---------AT-T-----------------------Cagtataggatatagatctgaattgtttaatgtactgattgta
gi|16 : A-C-TCC-TCCC----AA--C-AA-------------AAGTT-GA-----AA--CA-------TGA--------A--AAACC--TTG-----TTT---A------GAATA----T----ATAA--C---TTTATATCTTTTAGACCCGTGTGTC-------A-GGGTAACAAGTGAAATT--GT--TAAT-TATT-----TTA-TC-----TAAATAA-----------T-A-------TTATTA-TACATAGT-------AAGTAA-T---G-TTTT---------TTAC-T----GA----AA--------------TAAA-A----G--AAA---------AT-T-----------------------CT-----------
gi|16 : c----------AT---------CT----------GG--------GA----------G---TT-------AAA-T-----ACCCC-CATT--GTTTCCAT-TTTGGGGGGTAAATTACCCTCATATTAAAAA-AGT-TATCTGGGgagttttacaagtagggttgtatcttagactgtttctttacctatgtctcagaaaatctgggagttaaatacccccattgtttccattttggggggtaaattaccctcatattaaaaaagttatctgggaca
gi|17 : cactcctcccaacaaaagttgaaacatgaaaaaccttgtttagaatatataactttatatcttttagacccgtgtgtcagggtaacaagtgaaattgttaattattttatctaaataatattattatacatagtaagtaatgttttttactgaaataaaagaaaattctgagttttacaagtagggttgtatcttagactgtttctttacctatgtctcagaaaAAAT-ACCCCTTAA-----GTTTTA-AAA---A-AA-AAGGAGTTGCATTTACCCCTTA-CTTT-T---AAA---AGTTTGG--GG----T---AA--AGTTA-C-ACC-TGCA----AA-ACAAATTT-TCTG-----AAA-T-GA-----AA--TA-------TAA--------A--AAACC--TTG-----TTT---A------GAATACATGT----ATAA--TGATTTCATATCTTGGAGACAAATGTGTCT------T-AGATAGCAAAAAAAAGT--GT--AAAT-TACT-----AAA-TC-----TAAA-AA-----------T-A-------TTA-TA-TA---AGT-------AAGTCA-A---G-TTTT---------TAAT-T----GA----AA--------------TAAA-T----G---AA---------GT-T-----------------------CT-----------aca
gi|18 : -------T-AGAAAACGAATGAAATCAAGT--CAAT-TACC-----TAA-TT-----TGA-TAA-----------T-A-------TTA-TG-CA---AAT-------GAGCAA-T---G--TTT---------TAAC-T----GA----AA--------------CAAA-T----T--GAC---------AT-T-----------------------CT-----------gaattttgcaataagtaagatt
gi|18 : aatgttccgtatataagatataatttgTTTCCG-TTCTAGGGCCAAACTATCCTCTTATCAGACA-A---CAGCTGGGGgatatattaattatacttagtgcaatagatagccatttacacttatcgttgaatatctgggagtaaaaggaattattatttccgttctagggccaaactatcctcttatcagacaacagctggggctctgttta
gi|19 : aatgttccgtatataagatataatttgtagaaaacgaatgaaatcaagtcaattacctaatttgataatattatgcaaatgagcaatgttttaactgaaacaaattgacattctgatatattaattatacttagtgcaatagatagccatttacacttatcgttgaatatctgggagtaaaaggaattattaAGAGGTCTGGATAAGGTG--ATTG---------------TGG-TGG-T-------A-TTTTACC---ATG-ATTTA-GCTAATT-ACTCCTTA------GTTTGA-AAA---C-AA-TTGGGAT-ATATTTACCCCATAGCTTT-T---AAA---ACTT---------------------TTA-C-TCCTTCCA----A-----AAGAC-TCT------ATATT-GA-----AA--TA-------TGG--------T--TATTC--TTA-----TTT---ATTTATCAGATACATGT----ATAA--TGA---CATActctgttta
gi|2 : ttaatttacaatacGTGGCCAAGATAAGGTG--ATTT---------------TTA-GGG-T-------A-TTTTACCTACATT-GTTTA-TCTCAAT-ACCCCTTA------GTTTTC-AAA---A-T--TGGAGGT-CAATTTACCCCTTA-CTTT-T---AAA---AGTAAGG--AG----T---AA--AGTTG-C-TCT-TCAA----TT-AC-AAGGT-TTCT-----GAACA-AA-----AA--TA-------TGA--------A--AAGCC--TTG-----TTT---A------AAATACAAGT----AAAA--TGATTTTATATTTTGGAGACCCATGTGTCT------T-AGAAAGCAAATGGAAGT--GT--AAAT-TACT-----TAG-TT-----TATATAA-----------T-A-------TTA-TG-AA---AGT--------ATTAA-A---A-TTTT---------TAAT-T----TA----AA--------------TAAA-T----G--AAA---------Aaaatgaactcaaaatacaaaatttgaacttgttatattatgta
gi|2 : ATGAAAGT--ATTAAAAT-T-TT-----TAA-TT-----TAAATAAATGAAAAAATCTGA-------TTT-TG-GC---ACT-------AAGTAC-G---A-TTTTGGTG-----TATC-T----TACG--AC--------------TGTA-T----G-----------------------------------------CT-----------T-----CACTA-C-CCTC----------AC---------CT----------CT--------GAAATTCTCAAAG---TT-------AAA-T-----ACCCC-CA-T--CTTATAAA-TTTTTGGGGTAAAATACCCTCTTATCAATAA-AGT-TATCTaatctgattttggcactaagtacgattttggtgtatcttacgactgtatgcttcactaccctcacctctgaaattctcaaagttaaatacccccatcttataaatttttggggtaaaataccctcttatcaataaagttatcttgag
gi|20 : gtggccaagataaggtgatttttagggtattttacctacattgtttatctcaataccccttagttttcaaaattggaggtcaatttaccccttacttttaaaagtaaggagtaaagttgctcttcaattacaaggtttctgaacaaaaatatgaaaagccttgtttaaaatacaagtaaaatgattttatattttggagacccatgtgtcttagaaagcaaatggaagtgtaaattacttagtttatataatattA----------G---TT-------AAA-T-----GCCCT-AAA---CTTTTCCA-TTTTGAAGGTAAATTACTCTCTTGTTAAAAA-AAG-TATATGGGGtgag
gi|21 : attaaaataagattgcaatgtagccaagacttaatgcatctttgtccacatctcttaacatctc-T-----------------------TT-----------T-----CTTTA-C-CCTCGTGTTCGTAGAT---------CT----------GG--------GA----------G---TA-------AAAAT-----ACGCC-CA-C--CTTTACAT-TATTAGCAGTAAATTACCCTCATATCAATAA-A-T-TATCTGGGGcactgagcattaataaaatattatgacttttgaatgttaaattggtgtatttttaacaaaaaatgtgtttt
gi|22 : ttttaactagaacatacatgtgtaacacattagttttgattcatacattttcaaataatatagctagtgtttatattccG-GGG-T---------TGTTAGCCTAATG-ATTTA-GCTTGAT-AG---TT-------GTTTT--AAA---A-AA-TAGGGGC-AAATCTTTCCCATA-CCTT-T---GAA---ACTAGGG--GG----T---AA--ATTGA-C-TC---CCA----TA----AATGTATCTG------AATT-G----------TA-------TTG--------A--AAACCGATTA-----CTT---A------Actctg
gi|23 : attagatgattatggtggcgaggaTTT-T---AAA---AGT-AGA--GG----T---AA--AGTTG-C-TTT-TCTC----AA-AC-AAAAT-TTCT-----AAACT-GA-----AA--TA-------TAT--------A--AAGCC--CTG-----TTT---T------AAATACATG------TAA--T-ACTTTATAT
gi|24 : cacttacacatgtATAAAGTG--ACTT---------------TGG----------------------CTCATG-ATTAA-GCTAAAT-ACCCA-AA------GTTTTC-AAAGGTA-AA----GGAT-AAACTAA----TT--CTTC-C---CAA---AGTTat
gi|25 : ccagatttCATG-ATTTA-GCTAAAT-ACCTCTAA------GTT-----AA---A-AA-TTGGACC-AAATTTACC----A-AACT-T---AAA---AACTTGG--GG----T---AA--ATATA-C-CCA-TCtctatactggactata
gi|26 : ccaataaggtggtattgAAT-TAAT-----TAA-TT-----TAAACAA-----------T-A-------TCA-TG-TATTTGAT-------ATGCAAGA---GATTTT---------TAAC-T----GA----AA--------------TAAAGT----AGTAAA---------AC-T-----------------------CT-----------
gi|27 : -TTTTACCCCAATG-ATTTA-ACTA----------TA--------TTT---AA---A-AC-TGGG--T-GAATTTACCTCTTA-CATT-T---AAA---AGCAGGG--AGAACAT---AA--TGATA-CTTCT-TCCA----AA-gaaatttcaatttcctgattac
gi|28 : CCC-CAAT--ATTGTCAA-TTTTTGGGGTAAATTACTCTTTTGTTTAAAT-AAC-TATCTGGGGta
gi|29 : actcttcgaaaattaaggagcatatgtaAAATAAGTTG--GTTT---------------TTG-GAG-T-------AGTTTTACC-TCCTG-ATTTA-AGTAAAT-ACCTCTTA------GTTGTCTTGA---A-AA-TGTGGGT-AAATTTTCTTCTTcactg
gi|3 : atGGCCCAGATAAGGTG--ATTT---------------GGG-GGG-T----------TTTACCCTCATG-ATTTA-ACTAAAT-ATCCCTTA------GTTTTT-AAA---A-AA-TGGATGT-AAATTTACCTCTT-----T-T---AAA---AGATGGG--GA----T---AA--AGTTA-C-TGT-TCCA----AT-AC-AAAGT-TTCT-----TTTTT-GA-----AA--TA-------TGA--------A--AAAGC--TTG-----TTT---A------AACTACATAT----ATAA--TGATTTCATATCTTGGAGACCCACTTGTCTTACCGGT-AGGTAGCAAATGAAAGT--GT--ACAT-TACT-----TAA-TCTACCTTAAATAA-----------T-A-------TTA-T--------GT-------AAGTAA-A---G--TTT---------TAAC-T----GA----TA--------------TAAA-T----G--AAA---------AT-T-----------------------CT-----------
gi|3 : TAAAGTAGAATTT---------------TGA-----T-------A-TTT----CTCATTTCTTTATGCTTCATTACCCTCTA-------CTCTG-AAA---A-AC-TGAGAGTTGAAT--ACCCCCAT-CTTT-T---CAA---TTTTGGG--GG----T---AA--AA-TA-C-TCT-CTCA----AA-AA-AAGATATCTG-----GAgaattttgcactattaaagtagaattttgatatttctcatttctttatgcttcattaccctctactctgaaaaactgagagttgaatacccccatcttttcaattttgggggtaaaatactctctcaaaaaaagatatctgga
gi|3 : ggcccagataaggtgatttggggggttttaccctcatgatttaactaaatatcccttagtttttaaaaaatggatgtaaatttacctcttttaaaagatggggataaagttactgttccaatacaaagtttcttttttgaaatatgaaaaagcttgtttaaactacatatataatgatttcatatcttggagacccacttgtcttaccggtaggtagcaaatgaaagtgtacattacttaatctaccttaaataatattatgtaagtaaagttttaactgatataaatgaaaattctgaattttgcactat---------AT-G-----------------------CT-----------T-----CATTA-C-CCTCT---------ACTCTGAAAAACT----------GA--------GA----------G---TT-------GAA-T-----ACCCC-CA-T--CTTTTCAA-TTTTGGGGGTAAAATACTCTCTCA--AAAAA-AGA-TATCTGG
gi|30 : ggcccagataaggtgatttggggggttttaccctcatgatttaactaaatatcccttagtttttaaaaaatggatgtaaatttacctcttttaaaagatggggataaagttactgttccaatacaaagtttcttttttgaaatatgaaaaagcttgtttaaactacatatataatgatttcatatcttggagacccacttgtcttaccggtaggtagcaaatgaaagtgtacattacttaatctaccttaaataatattatgtaagtaaagttttaactgatataaatgaaaattctgaattttgcactattaaagtagaattttgatatttctcatttcttt----------AC---------CT----------GG--------GA----------G---TA-------AAAAT-----ACCCC---AC--TTATTCAG-TTTAAGAGGTAAACTACCCTCTTATAAAAa
gi|31 : ttgcaaGACCCAGACAATGTG--ATCT---------------TGT-GAA-C-------A-CTTTATATCCATA-ATTTA-ACTAAAT-ACCTTTCT------GATTT--AGA---A-AA-TGGGGAT-ATAATTACCtgatgcatttgatctggtgctct
gi|32 : T--CTTTTCAA-ATTTTGATGTAAAATACCTTCATAT--AAAA-AAT-TATCTGGG
gi|33 : agaaaatctggggacaaaagaacaatttG--------GA----------G---TA-------AAA-TTA---ATCCCTCTATACCTTCTCAC-TTTATGAAGCAATCAACCCTGTTATCAATAT-AAT-TATCTGGGGcatt
gi|34 : AGGCAAGATA--ATTT---------------TGGTGGG-T-------A-TTT-ATCCGCATG-ATTCA-GCTAAAT-Actcaga
gi|36 : agatttca-------AAA-T-----ACTCT-CACT--TTTTT-AA-TTTATGGAGTAAATTATTCCCATAACAAAAACA---TACCTGGGGgtaaataaattatatcaaaaaa
gi|38 : gggtaaGGCCCAGATTAGGTG--ATTT---------------C-G-AGG-T-------A-CTTGACTCCAAAG-ACGTA-GCTATAT-ATCCATTG------GTTAT---AA---A-AA-Tctctg
gi|39 : GGCCAAGATAATGTG--GTTT---------------TCG-GGA-T-------A-TTTTATCGTCATG-ATTTA-GCTTAAT-A-TCTGTA------GTTTTG-AAA---A-t
gi|4 : gaAGTGGCCAAGATAATGTC--ATTT---------------TGG-GGGGT-------A-TTTTACCCTCATT-GTTTA-GCTAAAT-ACCACTTACATGTAGTTTTA-AAA---A-AA-TGGAGGT-AAATTTACCCCTTA-CTTT-T---ATA---AGTTGGG--GG----T---AA--AGTTA-C-TCC-TCCA----AT-AC-AAATT-TTCT-----AAACT-GA-----AA--TG-------TGA--------A--AAACT--TTG-----TTT---A------AAATACATGT----ATAA--TGATTTCATATCTTGGAGACCCATGTGTCT------T-AGATAGCAAATGAAAGT--TT--AAAT-TACT-----TTA-TC-----TAAATAA-----------T-A-------CTA-TT-TA---AGT-------AAGT---A---G-TTTT---------TAAC-T----AA----AA--------------TATA-T----A--AAA---------AT-T-----------------------CT-----------
gi|4 : -----------------------CT-----------T-----CATTA-C-CCTC----------AC---------CTCTGAAAATCTGG--------GA----------G---TT-------AAA-T-----------------CTTTTCAA-TTTTTGGAGTAAAATACCCTCTTATCAAAAA-TGT-TATCTGGAGgattaagtaagatttttaatgtattaatgtatgcttcattaccctcacctctgaaaatctgggagttaaatcttttcaatttttggagtaaaataccctcttatcaaaaatgttatctggagc
gi|41 : agtggccaagataatgtcattttggggggtattttaccctcattgtttagctaaataccacttacatgtagttttaaaaaaatggaggtaaatttaccccttacttttataagttgggggtaaagttactcctccaatacaaattttctaaactgaaatgtgaaaaactttgtttaaaatacatgtataatgatttcatatcttggagacccatgtgtcttagatagcaaatgaaagtttaaattactttatctaaataatactatttaagtaagtagtttttaactaaaatatataaaaattctgattaagtaagatttttaatgtattaatgtatg-------AAA-T-----ATCC-----T--TTTTTAAA-TTTTTGGGGTGAATTATCCTCTCATCAAAAG-AAT-TATCc
gi|42 : aagcaGTG--ATTC---------------TGG-GGG-T-------A-ATTTATCCTCATG-GTTTA-GCTAAAT-
gi|43 : tgaaccgaacataCCAGATAATATG--TTTT---------------TTA-GAG-T-------A-TTT-ACCCTGATG-ATTAA-ATCGAAT-ACC
gi|44 : GTGGCCAAGATAAGCTG--ATTT---------------TGT-GTG-T-------A-TTCTACCCTCATC-ATTTA-
gi|45 : -----TAA-TC-----TAAATCA-----------T-A-------TTG-CG-CA---AAC-------AAGTAA-A---G-cc
gi|46 : attatttacaaTTTTC-ATA---A-T--TGGAGGT-AACTTTACCCCTTA-CCTT-A---AAA---AGTgt
gi|47 : GGGGGTAAATTACCCTCTTATTTTAAA-AGT-TATCTGGGGa
gi|5 : AGTGGCCCAGGTAAAGTG--ATTT---------------TGG-GGG-T-------A-TTTTACTCTCATG-CTATA-GCTAAAT-ACTCGCTA------GTTTTT--GA---A-AA-TGGATGT-AAATTAACCTTTCA-A-TT-T---AAA---AGTAAGG--GG----T---CA--AGTTA-T-TCC-TCTC----AA-AC-AAAAT-TTTT-----ATATA-TA-----AA--TA-------CGA--------G--AAACC--TTG-----TTT---G------AA----ATGT----ACGA--T-ATT--ATATCTTGTCGACCTGTGTGTC-------T-AGATAGCAAATGAAATT--GT--AATT-TACTTACAATAA-TC-----TAAATCA-----------T-A-------TTA-TG-CA---AGC-------AGGTAA-A---G-ATTT---------TAAA-T----GA----AA--------------TAAA-T----G--AAA---------Ac
gi|5 : -----------T-----CTTTA-C-CAAC----------AT---------CT----------GG--------GA----------G---TT-------AAA-T------CCCT-CAAA--CTTTTCCA-TTTGGGGGTTAAATTACTCTatttgaattttaataaataaaattgcaatgtatgtctgatgttatgcatctttaccaacatctgggagttaaatccctcaaacttttccatttgggggttaaattactct
gi|6 : agtggcccaggtaaagtgattttgggggtattttactctcatgctatagctaaatactcgctagtttttgaaaatggatgtaaattaacctttcaatttaaaagtaaggggtcaagttattcctctcaaacaaaatttttatatataaatacgagaaaccttgtttgaaatgtacgatattatatcttgtcgacctgtgtgtctagatagcaaatgaaattgtaatttacttacaataatctaaatcatattatgcaagcaggtaaagattttaaatgaaataaatgaaaaatttgaattttaataaataaaattgcaatgtatgtctgatgttatgcaCCTAGATAAAGTT--AATT---------------TGA-GTA-C-------A-TTTTACTCTCGTG-A-------------A----TTA------GTTT-----A---A-AA-TGGCAGT-AAATTTGACGCTT----TT-A---AAA---AAATGGC--TG----TGAAAA--AGT-A-T-CCC-TTCATTATAA-ACTGAAAT-TTT------ATATTAGT-----AT--TA-------TGA--------A--AAGTT--GTG-----TTT---A------AAAAAAA-------A-AA--TGATTTTAC-TCTAAAAGAC--------------------ATA-----TGAAAT---------A---ACC-----TAAGTT-----TGAATAA-----------C-A-------TTA-TG-TA---AGT-------AAGAAA-G---A-TCTT---------TAAC-T----GA----AA--------------TAAA-T----A--GAA---------AC-T-----------------------CT-----------
gi|6 : T----------GA--------GA----------G---TT-------AAA-T-----AATGT-CGCT---TTTTCAT-CTTTGAGAATAAATTACCTTTGTAACAGGAA-A-T-TATCTGGGGgatggaactgttcaatttgctgattgcgacggattattgctatatttaggctgtttacaaacatcttcaagtttatgagagttaaataatgtcgctttttcatctttgagaataaattacctttgtaacaggaaattatctggggcg
gi|7 : cctagataaagttaatttgagtacattttactctcgtgaattagtttaaaatggcagtaaatttgacgcttttaaaaaaatggctgtgaaaaagtatcccttcattataaactgaaattttatattagtattatgaaaagttgtgtttaaaaaaaaaaatgattttactctaaaagacatatgaaataacctaagtttgaataacattatgtaagtaagaaagatctttaactgaaataaatagaaactctgatggaactgttcaatttgctgattgcgacggattattgctatatttaggctgtttacaaacatcttcaagtttaAGTGGCCCAGGTAAAGTG--ATTT---------------TGG-GGG-T-------A-TTTTACTCTCATG-CTAAA-GCATAAT-ACTCGCTA------GTTTTT-GAT---A-A--TGGATGT-AAATTAACCTTTCA-ATTT-----AAA---AGTAAGG--GG----T---CA--AGTTA-T-TCC-TCTG----AA-AC-AAAAT-TTCT-----ATACA-GA-----AA--TA-------CGA--------G--AAACC--TTG-----TTT---G------AAAT----GT----ATGA--C-ATT--ATATCTTGTCGACCTGTGTGTC-------T-AGATAGCAAATGAAATT--GT--AC-T-TACAA----TAA-TC-----TAAATCA-----------T-A-------TTA-TG-CA---AGC-------AGGTAA-A---GATTTTAAATGAAA-TAAA-T----GA----AAAATTTGAATTTTAATAAA-T----A--AAATTGCAATGTATAT-----------------------CTGTTGTTATGCAT-----CTTTA-C-CAAC----------AT---------CT----------GG--------GA----------G---TT-------AAA-T------CCCT-CAAA--CTTTTCCA-TTTGGGGGTTAAATTACTCTcg
gi|8 : AGAGGCCCAGATAAGGTA--ATTT---------------TGG-GGG-T-------A-TTTTACCCACATG-ATTTA-ACTAAAT-ACCCCATA------GTTTTC-AAA---A-AA-TGGGGGT-AAATTTACCCTTTA-ATTT-T---AAA---AGTTAGG--GG----T---AA--AGTTA-C-TCT-TCCA----AA-AT-TATAT-TCCG-----AAACT-GA-----AA--TA-------TGA--------A--AAACC--TTG-----TAT---G------AAAAACATGA----ATAA--TAAGTTGGTATCTTGGAGACCCACGTGTCG------T-AGATAGCAAATGAAACT--GT--AAAT-TACT-----TAA-TC-----TAAATAA-----------T-A-------CAA-TG-TA---AGT-------AAGTAA-A---A-TTTT---------TAAC-T----GA----AT--------------TAAA-T----G--AAA---------AT-T-----------------------CT-----------T-----CATTA-C-TTGC----------AC---------CT----------GG--------GA----------G---TT-------AAA-T-----ATCCC-CAAT--CTTTTCAA-TTTTCGGGGTAAAATACCCTCTTAACAAAAA-AGT-TATCTAGAG
gi|9 : GTGGCCCAGATAAGGTA--ATTT---------------TGT-GGG-T-------A-TATTACCCCCAAT-ATTTA-GCTAAAT-ACCCCTTA------GTTTTT-AAA---ATAA---GGGGA-ACATTTACCCATTT-TCTT-TGAAAAA---AAT--GG--GG----T---ATTTAGTTAAC-TCC-TTCC----AA-AT--ATTT-TC--------AAC------------------------A--------A--AGATC--T-G-----TGT---A------AAA---A-------ATAG---GACTTTATAATATAAGGA-------------------AAATG--AAATAAAA----GT--AAAC-TACA-----TAA-TT-----TACGTTA-----------T-A-------TTA-TG-TA---ACTTTAACTGAAATAA-A------TTG---------AAAC-T----GACTGCAA--------------TGAA-TCTTAG--A--------------T-----------------------CT-----------TGTGCCTATTAACGCCAC----------AG---------CTTC--------AA--------TA----------GATCTTGATGTAAAAA-T-----ATCCC---AC--CTGTTAAAATTTTGGGGGTAAATAACCCTCTTAATAAAAATAG--TATCTTGGG
6 sequences could not be aligned to this reference sequence:
Unaligned ( gi|35 ): CTGAGAAATCCTCTGATTTCAAAACAAGTGTCAAACCCAGTCTTTGTTTATATTTTTGAATGTCCAAAATGTTTGTTT
Unaligned ( gi|37 ): TTAACTTAAAATATATGGAGGTAAATTTACTTCTCAAAATTCTTGGAAGAAAGTTTATATACTGAAATATG
Unaligned ( gi|40 ): ATCAATATACTAGGAAACTTATGCAAATGTCTACAGGAAAATAATTATCATAAATAGATGAAAATGA
Unaligned ( gi|48 ): CTGAAATTGTCTCAATAATATCTGTTATCCATTTTTTGT
Unaligned ( gi|49 ): CCTTACCCGATCAATAATCTGTTGATTTCTTTTGCTT
Unaligned ( gi|50 ): AAAATCTTGAAGAACTTTAATGTTTTAAAGCAAATGT
Alignments
lowQualScore : 111111111111111 2222222222222222 1111111 222222222 11111111111111 11111111111111111111111 11111111111111111 2222222222222222222222222222222222222222222 1111111111 1111111
lowQualScore : 22 111111111111111 1 1 5555555 1 1 1 1 666666 88 1 88 3 444 1 222 222 1 999 22 3333 222 22 3 1 1 66666 66666666 1 88888888 1 1 44444 22 5555555 77777777 22 77 55555 6666666666 1 6666666666 5555 4 1 5555555555555555 3 6666 33 2 77777 2 55555 99999999999 2 6666666 2 22 999 5555555 2 333 44 000000000 2 4444 7777 66666666666666 2 4444444 888888888 2 88888888888888888888888 11111111111111111 0 4 4 1 2222222222222222222222222222222222222222222 0000000000 444 66666666 6 888888 3333333 1 1 0 4 999
lowQualScore : .. ............... . . ....... . . . . ...... .. . .. . ... . ... ... . ... .. .... ... .. . . . ..... ........ . ........ . . ..... .. ....... ........ .. .. ..... .......... . .......... .... . . ................ . .... .. . ..... . ..... ........... . ....... . .. ... ....... . ... .. ......... . .... .... .............. . ....... ......... . ....................... ................. . . . . ........................................... .......... ... ........ . ...... ....... . . . . ...
lowQualScore : 55 444444444444444 7 7 7777777 6 4 4 4 000000 77 5 55 2 444 6 888 888 6 444 33 5555 999 33 2 6 6 22222 00000000 7 99999999 6 8 55555 55 9999999 22222222 88 55 00000 5555555555 4 0000000000 4444 6 0 8888888888888888 6 9999 11 1 00000 0 00000 55555555555 0 5555555 0 11 888 0000000 0 555 22 555555555 1 5555 4444 88888888888888 1 8888888 444444444 2 55555555555555555555555 00000000000000000 3 0 0 0 2222222222222222222222222222222222222222222 3333333333 111 99999999 3 555555 5555555 8 5 1 4 222
consensus : AGTGGCCCAGATAAGGTG--ATTT---------------TGG-GGG-T-------A-TTTTACCCTCATG-ATTTA-GCTAAAT-ACCCCTTA------GTTTTC-AAAA-AA-TGGGGGT-AAATTTACCCCTTA-CTTT-T---AAA---A-GT-TGGG--GG----T---AA--AGTTA-C-TCC-TCCA----AA--------AC-AAA-------ATTTCTANACT-GA-----AA--TA-------TGA--------A--AAACC--TTG-----TTT---A------AAATACATGT----ATAA--TGATTTCATATCTTGNAGACCCGTGTGTC-------T-AGATAGCAAATGAAATT--GT--AAAT-TACT-----TAA-TC-----TAAATAA-----------T-A-------TTA-TG-TA---AGT-------AAGTAA-A---G-TTTT---------TAAC-T----GA----AA--------------TAAA-T----G--AAA---------AT-T-----------------------CT-----------T-----CATTA-C-CCNC----------AC---------CT----------GG--------GA----------G---TT-------AAA-T-----ACCCC-CAAT--CTTTTCAA-TTTTGGGGGTAAATTACCCTCTTATCAAAAA-AGT-TATCTGGGG
Reference ( family-1918 ) : AGTGGCCCAGATAAGGTG--ATTT---------------TGG-GGG-T-------A-TTTTACCCTCATG-ATTTA-GCTAAAT-ACCCCTTA------GTTTTC-AAAA-AA-TGGGGGT-AAATTTACCCCTTA-CTTT-T---AAA---A-GT-TGGG--GG----T---AA--AGTTA-C-TCC-TCCA----AA--------AC-AAA-------ATTTCTANACT-GA-----AA--TA-------TGA--------A--AAACC--TTG-----TTT---A------AAATACATGT----ATAA--TGATTTCATATCTTGNAGACCCGTGTGTC-------T-AGATAGCAAATGAAATT--GT--AAAT-TACT-----TAA-TC-----TAAATAA-----------T-A-------TTA-TG-TA---AGT-------AAGTAA-A---G-TTTT---------TAAC-T----GA----AA--------------TAAA-T----G--AAA---------AT-T-----------------------CT-----------T-----CATTA-C-CCNC----------AC---------CT----------GG--------GA----------G---TT-------AAA-T-----ACCCC-CAAT--CTTTTCAA-TTTTGGGGGTAAATTACCCTCTTATCAAAAA-AGT-TATCTGGGG
gi|1 : AGTGGCCCCGATAAGGTG--ATTTGGGTGGTTGTGGGGTTGG-GGG-TGATGGGTA-TTTTACCCATATG-GTATA-GCTAAAT-ACCCCTTA------GTTTTC-AAAA-A--TGGAGGT-GAATTTACATCTTA-CTTT-T---GAA---A-GT-TTGG--GG----T---AA--AGTTA-C-TCC-TCCA----AT--------AT-AAA-------TTTTCTGAACT-GA-----AA--TA-------TTA--------A--AACCC--TTG-----TTT---A------AAATACATGT----ATAA--TGATTTCATATCTTGGACACCAATGTGTC-------TTAGATAGCAAATGAAAGT--GT--AAAT-TACT-----TAA-TA-----CAAATGA-----------T-AATTTTTATTA-TG-TA---AGT-------TAGTAA-A---G-TTTTTAATTGACATAAA-T----GA----AAATTC----------TGAA-T----T--AAG---------AT-CTTAATGTATCTTACGACTGTATGCT-----------T-----CATTA-C-CCTC----------AC---------CTCT--------GAAAATCTCAGA----------G---TA-------AAA-T-----ACCCC-CA-T--CTTTTCAA-TTTTGGGGGTAAAATACCCTCTTATCAATAA-AGT-TATCTG
gi|10 : G-GTTCA-GTTAAAT-ATCCCATA------ATTTTC-AAAT-A--TGAAGTT-AAATTTACCACTTA-TCAT-A---AAA---A-GT-AGAGACGG----T--------GTTAAC-TCC-TCCC----AA--------AC-AAA-------ACTTCTGTACT-GA-----TA--TT-------TAA--------A--AAAAAAATCG-----ATT---G------AAATA----T----TTAA---AATT--ATATCTTGTAGACCCGTATATT-------T-AGAAAGCCAATGGCATG--GT--AAAT-TACT-----TAA-TC-----TAAAAAA-----------T-------------TG--A---AAT-------AAATAA-A---G-AATT---------TTAC-T----GA----AA--------------TAAA-T----G--CAA---------AT-T-----------------------CT-----------cagc
gi|10 : ---------CT----------GG--------AA----------A---TT-------AAAAT-----ACGAC--AAT--CTTTTCCA-TTTTGGGTTTAAATTATTCTTTCATTAAAAgaattttgcaataaacaaaggttgcgaacaatctttgactttataagtctttacccatatctctgaaaatctggaaattaaaatacgacaatcttttccattttgggtttaaattattctttcattaaaatgtcat
gi|11 : ggttcagttaaatatcccataattttcaaatatgaagttaaatttaccacttatcataaaaagtagagacggtgttaactcctcccaaacaaaacttctgtactgatatttaaaaaaaaaatcgattgaaatatttaaaattatatcttgtagacccgtatatttagaaagccaatggcatggtaaattacttaatctaaaaaattgaaataaataaagaattttactgaaataaatgcaaattctgaattttgcaataaacaaaggttgcgaacaatctttgactttataagtctttacccatatctctgaaaatGGCCCAGATAAGGTG--ATTT---------------TGG-GGG-T-------A-TTTTACCCTCATG-GTTTA-GCTAAAT-ACCCCTTA------GTTTTC-AAAA-T--TGGAGGT-AAAGTTACCCCTTA-CCTT-T---AAA---T-AT-AGGG--GG----T---AA--AGTTA-C-TCT-TCTC----AA--------AC-AAA-------ATTTCTATACT-GA-----AA--TA-------TGA--------A--AAACC--TTA-----TTT---A------GA----ATGT-----TA-------CTTATATCTTGTAGACCC-------------------------------TT--GT--AAAT-TACT-----AAA-CC-----CAAATCA-----------T-A-------TTA-TG-TA---TGTTA-----AAGTAC-A---G-TTTT---------TAAC-T----GA----AA--------------TACA-T----A--ACA---------AT-T-----------------------CT-----------C-----AATTtgtcat
gi|12 : T-ACCCCAGA------GCTT---GGGA-AA-TAAGGAT-ATATTTACTCTTTATCTTT-T---AAAGTGA-GA-TGGG--TG----T---AA--ACTTA-C-TCC-TTCC----AA--------AT-ATATCTTTCTGTTTCTATACT-GA-----AA--AA-------TGATTGCTCTGA--AAA-----TA-----TTTACCA------AAATAAA---------AG--TGATTTTATAttacaataaattataattttatcttaaacttaatgcttccttacccatatctctgaaaatctgggattgaatgccccct
gi|12 : G--------GA----------G---TA-------AAA-T-----GCTAT-CATT--GTTTT-GA-TTTTATGGGTACCTTACTCCTTCATCAAAC----TGTATCTGGGaatgaaataaaaaaaaattaggcgcgcacacaatatacttttactgtaaatgatcagtattacaatgaatctgagatcttgtgcctgtttatgcacatctttaaaactattggagtaaaatgctatcattgttttgattttatgggtaccttactccttcatcaaactgtatctgggactttggttaagta
gi|13 : taccccagagcttgggaaataaggatatatttactctttatcttttaaagtgagatgggtgtaaacttactccttccaaatatatctttctgtttctatactgaaaaatgattgctctgaaaatatttaccaaaataaaagtgattttataaatgaaataaaaaaaaattaggcgcgcacacaatatacttttactgtaaatgatcagtattacaatgaatctgagatcttgtgcctgtttatgcacatctttaaaactattCCTCGTG-GTTTA-GCTAAAT-ACTCCTTA------GTTTTC-AAAA-T--TGGAGGT-AAATTTACCCCTTA-CCTT-T---AAA---A-GT-AAGG--GA----T---AA--CGTTA-C-TCA-TCCC----AA--------AC-AAA-------ATATCTATACT-GA-----AA--TA-------CGA--------A--AAACC--TTG-----TTT---A------GA----ATGT-------A--TGACTT-ATATCTTGTAGACCC-------------------------------TT--GT--AAAT-TGCT-----GAA-CC-----TAAATAA-----------T-A-------TTA-TG-TACT-GGTATGTTA-AAGTAA-A---G-TTAT---------TAAC-TGTCAGA----AA--------------TATA-T----G--AAA---------AT-T-----------------------CT-----------actttggttaagta
gi|13 : -----------------------CT-----------T-----CCTTA-C-CCAT----------AT---------CT----------CT--------GA-----------------------AAA-TCTCACACTCC-CA-T--TTTTACTA-TTTTGGGGGTgaattttacaataaataatatttcatctttaactttaagcttccttacccatatctctgaaaatctcacactcccatttttactattttgggggt
gi|14 : cctcgtggtttagctaaatactccttagttttcaaaattggaggtaaatttaccccttacctttaaaagtaagggataacgttactcatcccaaacaaaatatctatactgaaatacgaaaaaccttgtttagaatgtatgacttatatcttgtagacccttgtaaattgctgaacctaaataatattatgtactggtatgttaaagtaaagttattaactgtcagaaatatatgaaaattctgaattttacaataaataatatttcatctttaactttaag-TTTT--CCTCATG-GTTTA-GCTTAAT-ACCATTTT------GTTTAC-AAAA-AA-TTGTATT-AAATCTACACTTTA-CTTTAT---AAA------T-TTGG--GA----T---AA--AA--A---------CA----AC--------AC-AGT-------ATCCTTAAAGT-GAGGGGTAAATTACTCCCTCTGA--------ATTAAATT--TTT-----TTTA--A------AAAGACTTGTTAAAATAAATTGATTTTATATTTT-AAGAAAGG-------------T-AAATA--AAATCAAA----GT--AAGTATACC-----TAA-TT-----TAAATAA-----------T-A-------TTA-TGTTA---A---------AAGTTA-ACTTA-TTTT---------TAATAT----G-----AA--------------TAAA-T----
gi|15 : tGTGGCCCAGAAATGATG--ATTT---------------TAG-GGG-T-------A-TTTTACCCTCATG-ATTTA-ACTAAAT-ACCCCTGA------GTTTTC-AAAA-AAATGGATGC-ACATTTACCCCTTA-CTTT-T---AAA---A-GT-TAAA--GT----T---AA--AGTTA-C-TCT-TCCA----AA--------AC-AAA-------TTTTGTGAACT-GA-----AA--TA-------TGA--------A--AAACCA-TTAATACATTT---A------AAATACACGT----ATAA--TGATTTCATATCTTGGAGACCCACTTGTC-------TTAGATAGAAAGTGAATTT--AT--AAAT-TTCT-----AAA-TC-----TAAATAA-----------T-A-------TTA-TG-TA---AAT-------AAGTAA-A---G-TTTT---------TAAC-T----GA----AA--------------TAAA-T----G--AAA---------AT-T-----------------------Cagtataggatatagatctgaattgtttaatgtactgattgta
gi|16 : A-C-TCC-TCCC----AA---------C-AAA-------AGTT--------GA-----AA--CA-------TGA--------A--AAACC--TTG-----TTT---A------GAATA----T----ATAA--C---TTTATATCTTTTAGACCCGTGTGTC-------A-GGGTAACAAGTGAAATT--GT--TAAT-TATT-----TTA-TC-----TAAATAA-----------T-A-------TTATTA-TACATAGT-------AAGTAA-T---G-TTTT---------TTAC-T----GA----AA--------------TAAA-A----G--AAA---------AT-T-----------------------CT-----------
gi|16 : c----------AT---------CT----------GG--------GA----------G---TT-------AAA-T-----ACCCC-CATT--GTTTCCAT-TTTGGGGGGTAAATTACCCTCATATTAAAAA-AGT-TATCTGGGgagttttacaagtagggttgtatcttagactgtttctttacctatgtctcagaaaatctgggagttaaatacccccattgtttccattttggggggtaaattaccctcatattaaaaaagttatctgggaca
gi|17 : cactcctcccaacaaaagttgaaacatgaaaaaccttgtttagaatatataactttatatcttttagacccgtgtgtcagggtaacaagtgaaattgttaattattttatctaaataatattattatacatagtaagtaatgttttttactgaaataaaagaaaattctgagttttacaagtagggttgtatcttagactgtttctttacctatgtctcagaaaAAAT-ACCCCTTAA-----GTTTTA-AAAA-AA-AAGGAGTTGCATTTACCCCTTA-CTTT-T---AAA---A-GT-TTGG--GG----T---AA--AGTTA-C-ACC-TGCA----AA--------AC-AAA-------TTTTCTGAAAT-GA-----AA--TA-------TAA--------A--AAACC--TTG-----TTT---A------GAATACATGT----ATAA--TGATTTCATATCTTGGAGACAAATGTGTCT------T-AGATAGCAAAAAAAAGT--GT--AAAT-TACT-----AAA-TC-----TAAA-AA-----------T-A-------TTA-TA-TA---AGT-------AAGTCA-A---G-TTTT---------TAAT-T----GA----AA--------------TAAA-T----G---AA---------GT-T-----------------------CT-----------aca
gi|18 : -------T-AGAAAACGAATGAAATCAAGT--CAAT-TACC-----TAA-TT-----TGA-TAA-----------T-A-------TTA-TG-CA---AAT-------GAGCAA-T---G--TTT---------TAAC-T----GA----AA--------------CAAA-T----T--GAC---------AT-T-----------------------CT-----------gaattttgcaataagtaagatt
gi|18 : aatgttccgtatataagatataatttgTTTCCG-TTCTAGGGCCAAACTATCCTCTTATCAGACA-A---CAGCTGGGGgatatattaattatacttagtgcaatagatagccatttacacttatcgttgaatatctgggagtaaaaggaattattatttccgttctagggccaaactatcctcttatcagacaacagctggggctctgttta
gi|19 : aatgttccgtatataagatataatttgtagaaaacgaatgaaatcaagtcaattacctaatttgataatattatgcaaatgagcaatgttttaactgaaacaaattgacattctgatatattaattatacttagtgcaatagatagccatttacacttatcgttgaatatctgggagtaaaaggaattattaAGAGGTCTGGATAAGGTG--ATTG---------------TGG-TGG-T-------A-TTTTACC---ATG-ATTTA-GCTAATT-ACTCCTTA------GTTTGA-AAAC-AA-TTGGGAT-ATATTTACCCCATAGCTTT-T---AAA---A-CT-T---------------------TTA-C-TCCTTCCA----AA--------AG-A-----------CTCTATATT-GA-----AA--TA-------TGG--------T--TATTC--TTA-----TTT---ATTTATCAGATACATGT----ATAA--TGA---CATActctgttta
gi|2 : ttaatttacaatacGTGGCCAAGATAAGGTG--ATTT---------------TTA-GGG-T-------A-TTTTACCTACATT-GTTTA-TCTCAAT-ACCCCTTA------GTTTTC-AAAA-T--TGGAGGT-CAATTTACCCCTTA-CTTT-T---AAA---A-GT-AAGG--AG----T---AA--AGTTG-C-TCT-TCAA----TT--------AC-AAG-------GTTTCTGAACA-AA-----AA--TA-------TGA--------A--AAGCC--TTG-----TTT---A------AAATACAAGT----AAAA--TGATTTTATATTTTGGAGACCCATGTGTCT------T-AGAAAGCAAATGGAAGT--GT--AAAT-TACT-----TAG-TT-----TATATAA-----------T-A-------TTA-TG-AA---AGT--------ATTAA-A---A-TTTT---------TAAT-T----TA----AA--------------TAAA-T----G--AAA---------Aaaatgaactcaaaatacaaaatttgaacttgttatattatgta
gi|2 : ATGAAAGT--ATTAAAAT-T-TT-----TAA-TT-----TAAATAAATGAAAAAATCTGA-------TTT-TG-GC---ACT-------AAGTAC-G---A-TTTTGGTG-----TATC-T----TACG--AC--------------TGTA-T----G-----------------------------------------CT-----------T-----CACTA-C-CCTC----------AC---------CT----------CT--------GAAATTCTCAAAG---TT-------AAA-T-----ACCCC-CA-T--CTTATAAA-TTTTTGGGGTAAAATACCCTCTTATCAATAA-AGT-TATCTaatctgattttggcactaagtacgattttggtgtatcttacgactgtatgcttcactaccctcacctctgaaattctcaaagttaaatacccccatcttataaatttttggggtaaaataccctcttatcaataaagttatcttgag
gi|20 : gtggccaagataaggtgatttttagggtattttacctacattgtttatctcaataccccttagttttcaaaattggaggtcaatttaccccttacttttaaaagtaaggagtaaagttgctcttcaattacaaggtttctgaacaaaaatatgaaaagccttgtttaaaatacaagtaaaatgattttatattttggagacccatgtgtcttagaaagcaaatggaagtgtaaattacttagtttatataatattA----------G---TT-------AAA-T-----GCCCT-AAA---CTTTTCCA-TTTTGAAGGTAAATTACTCTCTTGTTAAAAA-AAG-TATATGGGGtgag
gi|21 : attaaaataagattgcaatgtagccaagacttaatgcatctttgtccacatctcttaacatctc-T-----------------------TT-----------T-----CTTTA-C-CCTCGTGTTCGTAGAT---------CT----------GG--------GA----------G---TA-------AAAAT-----ACGCC-CA-C--CTTTACAT-TATTAGCAGTAAATTACCCTCATATCAATAA-A-T-TATCTGGGGcactgagcattaataaaatattatgacttttgaatgttaaattggtgtatttttaacaaaaaatgtgtttt
gi|22 : ttttaactagaacatacatgtgtaacacattagttttgattcatacattttcaaataatatagctagtgtttatattccG-GGG-T---------TGTTAGCCTAATG-ATTTA-GCTTGAT-AG---TT-------GTTTT--AAAA-AA-TAGGGGC-AAATCTTTCCCATA-CCTT-T---GAA---A-CT-AGGG--GG----T---AA--ATTGA-C-TCC-C-----------------AT-AAAT------GTATCTGAATT-G----------TA-------TTG--------A--AAACCGATTA-----CTT---A------Actctg
gi|23 : attagatgattatggtggcgaggaTTT-T---AAA---A-GT--AGA--GG----T---AA--AGTTG-C-TTT-TCTC----AA--------AC-AAA-------ATTTCTAAACT-GA-----AA--TA-------TAT--------A--AAGCC--CTG-----TTT---T------AAATACATG------TAA--T-ACTTTATAT
gi|24 : cacttacacatgtATAAAGTG--ACTT---------------TGG----------------------CTCATG-ATTAA-GCTAAAT-ACCCA-AA------GTTTTC-AAA---------GGT-AAA-----------------------------------G--GA----T---AA--ACTAA-T-TCT-TCC----------------C-AAA-------GTTTCTATACT-GG-----AC--TA-------Tat
gi|25 : ccagatttCATG-ATTTA-GCTAAAT-ACCTCTAA------GTT-----AAA-AA-TTGGACC-AAATTTACC----A-AACT-T---AAA---A-AC-TTGG--GG----T---AA--ATATA-C-CCA-TCa
gi|26 : ccaataaggtggtattgAAT-TAAT-----TAA-TT-----TAAACAA-----------T-A-------TCA-TG-TATTTGAT-------ATGCAAGA---GATTTT---------TAAC-T----GA----AA--------------TAAAGT----AGTAAA---------AC-T-----------------------CT-----------
gi|27 : -TTTTACCCCAATG-ATTTA-ACTA----------TA--------TTT---AAA-AC-TGGG--T-GAATTTACCTCTTA-CATT-T---AAA---A-GC-AGGG--AGAACAT---AA--TGATA-CTTCT-TCCA----AA--------gaaatttcaatttcctgattac
gi|28 : CCC-CAAT--ATTGTCAA-TTTTTGGGGTAAATTACTCTTTTGTTTAAAT-AAC-TATCTGGGGta
gi|29 : actcttcgaaaattaaggagcatatgtaAAATAAGTTG--GTTT---------------TTG-GAG-T-------AGTTTTACC-TCCTG-ATTTA-AGTAAAT-ACCTCTTA------GTTGTCTTGAA-AA-TGTGGGT-AAATTTTCTTCTTcactg
gi|3 : atGGCCCAGATAAGGTG--ATTT---------------GGG-GGG-T----------TTTACCCTCATG-ATTTA-ACTAAAT-ATCCCTTA------GTTTTT-AAAA-AA-TGGATGT-AAATTTACCTCTT-----T-T---AAA---A-GA-TGGG--GA----T---AA--AGTTA-C-TGT-TCCA----AT--------AC-AAA-------GTTTCTTTTTT-GA-----AA--TA-------TGA--------A--AAAGC--TTG-----TTT---A------AACTACATAT----ATAA--TGATTTCATATCTTGGAGACCCACTTGTCTTACCGGT-AGGTAGCAAATGAAAGT--GT--ACAT-TACT-----TAA-TCTACCTTAAATAA-----------T-A-------TTA-T--------GT-------AAGTAA-A---G--TTT---------TAAC-T----GA----TA--------------TAAA-T----G--AAA---------AT-T-----------------------CT-----------
gi|3 : TAAAGTAGAATTT---------------TGA-----T-------A-TTT----CTCATTTCTTTATGCTTCATTACCCTCTA-------CTCTG-AAAA-AC-TGAGAGTTGAAT--ACCCCCAT-CTTT-T---CAA---T-TT-TGGG--GG----T---AA--AA-TA-C-TCT-CTCA----AA--------AA-AAG-------ATATCTGGAgaattttgcactattaaagtagaattttgatatttctcatttctttatgcttcattaccctctactctgaaaaactgagagttgaatacccccatcttttcaattttgggggtaaaatactctctcaaaaaaagatatctgga
gi|3 : ggcccagataaggtgatttggggggttttaccctcatgatttaactaaatatcccttagtttttaaaaaatggatgtaaatttacctcttttaaaagatggggataaagttactgttccaatacaaagtttcttttttgaaatatgaaaaagcttgtttaaactacatatataatgatttcatatcttggagacccacttgtcttaccggtaggtagcaaatgaaagtgtacattacttaatctaccttaaataatattatgtaagtaaagttttaactgatataaatgaaaattctgaattttgcactat---------AT-G-----------------------CT-----------T-----CATTA-C-CCTCT---------ACTCTGAAAAACT----------GA--------GA----------G---TT-------GAA-T-----ACCCC-CA-T--CTTTTCAA-TTTTGGGGGTAAAATACTCTCTCA--AAAAA-AGA-TATCTGG
gi|30 : ggcccagataaggtgatttggggggttttaccctcatgatttaactaaatatcccttagtttttaaaaaatggatgtaaatttacctcttttaaaagatggggataaagttactgttccaatacaaagtttcttttttgaaatatgaaaaagcttgtttaaactacatatataatgatttcatatcttggagacccacttgtcttaccggtaggtagcaaatgaaagtgtacattacttaatctaccttaaataatattatgtaagtaaagttttaactgatataaatgaaaattctgaattttgcactattaaagtagaattttgatatttctcatttcttt----------AC---------CT----------GG--------GA----------G---TA-------AAAAT-----ACCCC---AC--TTATTCAG-TTTAAGAGGTAAACTACCCTCTTATAAAAa
gi|31 : ttgcaaGACCCAGACAATGTG--ATCT---------------TGT-GAA-C-------A-CTTTATATCCATA-ATTTA-ACTAAAT-ACCTTTCT------GATTT--AGAA-AA-TGGGGAT-ATAATTACCtgatgcatttgatctggtgctct
gi|32 : T--CTTTTCAA-ATTTTGATGTAAAATACCTTCATAT--AAAA-AAT-TATCTGGG
gi|33 : agaaaatctggggacaaaagaacaatttG--------GA----------G---TA-------AAA-TTA---ATCCCTCTATACCTTCTCAC-TTTATGAAGCAATCAACCCTGTTATCAATAT-AAT-TATCTGGGGcatt
gi|34 : AGGCAAGATA--ATTT---------------TGGTGGG-T-------A-TTT-ATCCGCATG-ATTCA-GCTAAAT-Actcaga
gi|36 : agatttca-------AAA-T-----ACTCT-CACT--TTTTT-AA-TTTATGGAGTAAATTATTCCCATAACAAAAACA---TACCTGGGGgtaaataaattatatcaaaaaa
gi|37 : gggtaaT-T---AAA---ATATATGGA--GG----T---AA--ATTTA-C-TTC-TCAA----AATTCTTGGAAG-AAA-------GTTTATATACT-GA-----AA--TA-------TGctctg
gi|38 : ttaacGGCCCAGATTAGGTG--ATTT---------------C-G-AGG-T-------A-CTTGACTCCAAAG-ACGTA-GCTATAT-ATCCATTG------GTTAT---AAA-AA-T
gi|39 : GGCCAAGATAATGTG--GTTT---------------TCG-GGA-T-------A-TTTTATCGTCATG-ATTTA-GCTTAAT-A-TCTGTA------GTTTTG-AAAA-t
gi|4 : gaAGTGGCCAAGATAATGTC--ATTT---------------TGG-GGGGT-------A-TTTTACCCTCATT-GTTTA-GCTAAAT-ACCACTTACATGTAGTTTTA-AAAA-AA-TGGAGGT-AAATTTACCCCTTA-CTTT-T---ATA---A-GT-TGGG--GG----T---AA--AGTTA-C-TCC-TCCA----AT--------AC-AAA-------TTTTCTAAACT-GA-----AA--TG-------TGA--------A--AAACT--TTG-----TTT---A------AAATACATGT----ATAA--TGATTTCATATCTTGGAGACCCATGTGTCT------T-AGATAGCAAATGAAAGT--TT--AAAT-TACT-----TTA-TC-----TAAATAA-----------T-A-------CTA-TT-TA---AGT-------AAGT---A---G-TTTT---------TAAC-T----AA----AA--------------TATA-T----A--AAA---------AT-T-----------------------CT-----------
gi|4 : -----------------------CT-----------T-----CATTA-C-CCTC----------AC---------CTCTGAAAATCTGG--------GA----------G---TT-------AAA-T-----------------CTTTTCAA-TTTTTGGAGTAAAATACCCTCTTATCAAAAA-TGT-TATCTGGAGgattaagtaagatttttaatgtattaatgtatgcttcattaccctcacctctgaaaatctgggagttaaatcttttcaatttttggagtaaaataccctcttatcaaaaatgttatctggagc
gi|41 : agtggccaagataatgtcattttggggggtattttaccctcattgtttagctaaataccacttacatgtagttttaaaaaaatggaggtaaatttaccccttacttttataagttgggggtaaagttactcctccaatacaaattttctaaactgaaatgtgaaaaactttgtttaaaatacatgtataatgatttcatatcttggagacccatgtgtcttagatagcaaatgaaagtttaaattactttatctaaataatactatttaagtaagtagtttttaactaaaatatataaaaattctgattaagtaagatttttaatgtattaatgtatg-------AAA-T-----ATCC-----T--TTTTTAAA-TTTTTGGGGTGAATTATCCTCTCATCAAAAG-AAT-TATCc
gi|42 : aagcaGTG--ATTC---------------TGG-GGG-T-------A-ATTTATCCTCATG-GTTTA-GCTAAAT-
gi|43 : tgaaccgaacataCCAGATAATATG--TTTT---------------TTA-GAG-T-------A-TTT-ACCCTGATG-ATTAA-ATCGAAT-ACC
gi|44 : GTGGCCAAGATAAGCTG--ATTT---------------TGT-GTG-T-------A-TTCTACCCTCATC-ATTTA-
gi|45 : -----TAA-TC-----TAAATCA-----------T-A-------TTG-CG-CA---AAC-------AAGTAA-A---G-cc
gi|46 : attatttacaaTTTTC-ATAA-T--TGGAGGT-AACTTTACCCCTTA-CCTT-A---AAA---A-GT-gt
gi|47 : GGGGGTAAATTACCCTCTTATTTTAAA-AGT-TATCTGGGGa
gi|5 : AGTGGCCCAGGTAAAGTG--ATTT---------------TGG-GGG-T-------A-TTTTACTCTCATG-CTATA-GCTAAAT-ACTCGCTA------GTTTTT--GAA-AA-TGGATGT-AAATTAACCTTTCA-A-TT-T---AAA---A-GT-AAGG--GG----T---CA--AGTTA-T-TCC-TCTC----AA--------AC-AAA-------ATTTTTATATA-TA-----AA--TA-------CGA--------G--AAACC--TTG-----TTT---G------AA----ATGT----ACGA--T-ATT--ATATCTTGTCGACCTGTGTGTC-------T-AGATAGCAAATGAAATT--GT--AATT-TACTTACAATAA-TC-----TAAATCA-----------T-A-------TTA-TG-CA---AGC-------AGGTAA-A---G-ATTT---------TAAA-T----GA----AA--------------TAAA-T----G--AAA---------Ac
gi|5 : -----------T-----CTTTA-C-CAAC----------AT---------CT----------GG--------GA----------G---TT-------AAA-T------CCCT-CAAA--CTTTTCCA-TTTGGGGGTTAAATTACTCTatttgaattttaataaataaaattgcaatgtatgtctgatgttatgcatctttaccaacatctgggagttaaatccctcaaacttttccatttgggggttaaattactct
gi|6 : agtggcccaggtaaagtgattttgggggtattttactctcatgctatagctaaatactcgctagtttttgaaaatggatgtaaattaacctttcaatttaaaagtaaggggtcaagttattcctctcaaacaaaatttttatatataaatacgagaaaccttgtttgaaatgtacgatattatatcttgtcgacctgtgtgtctagatagcaaatgaaattgtaatttacttacaataatctaaatcatattatgcaagcaggtaaagattttaaatgaaataaatgaaaaatttgaattttaataaataaaattgcaatgtatgtctgatgttatgcaCCTAGATAAAGTT--AATT---------------TGA-GTA-C-------A-TTTTACTCTCGTG-A-------------A----TTA------GTTT-----AA-AA-TGGCAGT-AAATTTGACGCTT----TT-A---AAA---A-AA-TGGC--TG----TGAAAA--AGT-A-T-CCC-TTCATTATAA--------ACTGAA-------ATTT-TATATTAGT-----AT--TA-------TGA--------A--AAGTT--GTG-----TTT---A------AAAAAAA-------A-AA--TGATTTTAC-TCTAAAAGAC--------------------ATA-----TGAAAT---------A---ACC-----TAAGTT-----TGAATAA-----------C-A-------TTA-TG-TA---AGT-------AAGAAA-G---A-TCTT---------TAAC-T----GA----AA--------------TAAA-T----A--GAA---------AC-T-----------------------CT-----------
gi|6 : T----------GA--------GA----------G---TT-------AAA-T-----AATGT-CGCT---TTTTCAT-CTTTGAGAATAAATTACCTTTGTAACAGGAA-A-T-TATCTGGGGgatggaactgttcaatttgctgattgcgacggattattgctatatttaggctgtttacaaacatcttcaagtttatgagagttaaataatgtcgctttttcatctttgagaataaattacctttgtaacaggaaattatctggggcg
gi|7 : cctagataaagttaatttgagtacattttactctcgtgaattagtttaaaatggcagtaaatttgacgcttttaaaaaaatggctgtgaaaaagtatcccttcattataaactgaaattttatattagtattatgaaaagttgtgtttaaaaaaaaaaatgattttactctaaaagacatatgaaataacctaagtttgaataacattatgtaagtaagaaagatctttaactgaaataaatagaaactctgatggaactgttcaatttgctgattgcgacggattattgctatatttaggctgtttacaaacatcttcaagtttaAGTGGCCCAGGTAAAGTG--ATTT---------------TGG-GGG-T-------A-TTTTACTCTCATG-CTAAA-GCATAAT-ACTCGCTA------GTTTTT-GATA-A--TGGATGT-AAATTAACCTTTCA-ATTT-----AAA---A-GT-AAGG--GG----T---CA--AGTTA-T-TCC-TCTG----AA--------AC-AAA-------ATTTCTATACA-GA-----AA--TA-------CGA--------G--AAACC--TTG-----TTT---G------AAAT----GT----ATGA--C-ATT--ATATCTTGTCGACCTGTGTGTC-------T-AGATAGCAAATGAAATT--GT--AC-T-TACAA----TAA-TC-----TAAATCA-----------T-A-------TTA-TG-CA---AGC-------AGGTAA-A---GATTTTAAATGAAA-TAAA-T----GA----AAAATTTGAATTTTAATAAA-T----A--AAATTGCAATGTATAT-----------------------CTGTTGTTATGCAT-----CTTTA-C-CAAC----------AT---------CT----------GG--------GA----------G---TT-------AAA-T------CCCT-CAAA--CTTTTCCA-TTTGGGGGTTAAATTACTCTcg
gi|8 : AGAGGCCCAGATAAGGTA--ATTT---------------TGG-GGG-T-------A-TTTTACCCACATG-ATTTA-ACTAAAT-ACCCCATA------GTTTTC-AAAA-AA-TGGGGGT-AAATTTACCCTTTA-ATTT-T---AAA---A-GT-TAGG--GG----T---AA--AGTTA-C-TCT-TCCA----AA--------AT-TAT-------ATTCCGAAACT-GA-----AA--TA-------TGA--------A--AAACC--TTG-----TAT---G------AAAAACATGA----ATAA--TAAGTTGGTATCTTGGAGACCCACGTGTCG------T-AGATAGCAAATGAAACT--GT--AAAT-TACT-----TAA-TC-----TAAATAA-----------T-A-------CAA-TG-TA---AGT-------AAGTAA-A---A-TTTT---------TAAC-T----GA----AT--------------TAAA-T----G--AAA---------AT-T-----------------------CT-----------T-----CATTA-C-TTGC----------AC---------CT----------GG--------GA----------G---TT-------AAA-T-----ATCCC-CAAT--CTTTTCAA-TTTTCGGGGTAAAATACCCTCTTAACAAAAA-AGT-TATCTAGAG
gi|9 : GTGGCCCAGATAAGGTA--ATTT---------------TGT-GGG-T-------A-TATTACCCCCAAT-ATTTA-GCTAAAT-ACCCCTTA------GTTTTT-AAAATAA---GGGGA-ACATTTACCCATTT-TCTT-TGAAAAA---A-AT---GG--GG----T---ATTTAGTTAAC-TCC-TTCC----AA--------AT-A-----------TTTTCAAC------------------------A--------A--AGATC--T-G-----TGT---A------AAA---A-------ATAG---GACTTTATAATATAAGGA-------------------AAATG--AAATAAAA----GT--AAAC-TACA-----TAA-TT-----TACGTTA-----------T-A-------TTA-TG-TA---ACTTTAACTGAAATAA-A------TTG---------AAAC-T----GACTGCAA--------------TGAA-TCTTAG--A--------------T-----------------------CT-----------TGTGCCTATTAACGCCAC----------AG---------CTTC--------AA--------TA----------GATCTTGATGTAAAAA-T-----ATCCC---AC--CTGTTAAAATTTTGGGGGTAAATAACCCTCTTAATAAAAATAG--TATCTTGGG
5 sequences could not be aligned to this reference sequence:
Unaligned ( gi|35 ): CTGAGAAATCCTCTGATTTCAAAACAAGTGTCAAACCCAGTCTTTGTTTATATTTTTGAATGTCCAAAATGTTTGTTT
Unaligned ( gi|40 ): ATCAATATACTAGGAAACTTATGCAAATGTCTACAGGAAAATAATTATCATAAATAGATGAAAATGA
Unaligned ( gi|48 ): CTGAAATTGTCTCAATAATATCTGTTATCCATTTTTTGT
Unaligned ( gi|49 ): CCTTACCCGATCAATAATCTGTTGATTTCTTTTGCTT
Unaligned ( gi|50 ): AAAATCTTGAAGAACTTTAATGTTTTAAAGCAAATGT
Alignments
lowQualScore : 111111111111111 2222222222222222 1111111 222222222 11111111111111 11111111111111111111111 11111111111111111 2222222222222222222222222222222222222222222 1111111111 1111111
lowQualScore : 22 111111111111111 1 1 5555555 1 1 1 1 666666 88 1 88 3 444 1 222 222 1 999 22 3333 222 22 3 1 1 66666 66666666 1 88888888 1 1 44444 22 5555555 77777777 22 77 55555 6666666666 1 6666666666 5555 4 1 5555555555555555 3 6666 33 2 77777 2 55555 99999999999 2 6666666 2 22 999 5555555 2 333 44 000000000 2 4444 7777 66666666666666 2 4444444 888888888 2 88888888888888888888888 11111111111111111 0 4 4 1 2222222222222222222222222222222222222222222 0000000000 444 66666666 6 888888 3333333 1 1 0 4 999
lowQualScore : .. ............... . . ....... . . . . ...... .. . .. . ... . ... ... . ... .. .... ... .. . . . ..... ........ . ........ . . ..... .. ....... ........ .. .. ..... .......... . .......... .... . . ................ . .... .. . ..... . ..... ........... . ....... . .. ... ....... . ... .. ......... . .... .... .............. . ....... ......... . ....................... ................. . . . . ........................................... .......... ... ........ . ...... ....... . . . . ...
lowQualScore : 55 444444444444444 7 7 7777777 6 4 4 4 000000 77 5 55 2 444 6 888 888 6 444 33 5555 999 33 2 6 6 22222 00000000 7 99999999 6 8 55555 55 9999999 22222222 88 55 00000 5555555555 4 0000000000 4444 6 0 8888888888888888 6 9999 11 1 00000 0 00000 55555555555 0 5555555 0 11 888 0000000 0 555 22 555555555 1 5555 4444 88888888888888 1 8888888 444444444 2 55555555555555555555555 00000000000000000 3 0 0 0 2222222222222222222222222222222222222222222 3333333333 111 99999999 3 555555 5555555 8 5 1 4 222
consensus : AGTGGCCCAGATAAGGTG--ATTT---------------TGG-GGG-T-------A-TTTTACCCTCATG-ATTTA-GCTAAAT-ACCCCTTA------GTTTTC-AAAA-AA-TGGGGGT-AAATTTACCCCTTA-CTTT-T---AAA---A-GT-TGGG--GG----T---AA--AGTTA-C-TCC-TCCA----AA--------AC-AAA-------ATTTCTANACT-GA-----AA--TA-------TGA--------A--AAACC--TTG-----TTT---A------AAATACATGT----ATAA--TGATTTCATATCTTGNAGACCCGTGTGTC-------T-AGATAGCAAATGAAATT--GT--AAAT-TACT-----TAA-TC-----TAAATAA-----------T-A-------TTA-TG-TA---AGT-------AAGTAA-A---G-TTTT---------TAAC-T----GA----AA--------------TAAA-T----G--AAA---------AT-T-----------------------CT-----------T-----CATTA-C-CCNC----------AC---------CT----------GG--------GA----------G---TT-------AAA-T-----ACCCC-CAAT--CTTTTCAA-TTTTGGGGGTAAATTACCCTCTTATCAAAAA-AGT-TATCTGGGG
Reference ( family-1918 ) : AGTGGCCCAGATAAGGTG--ATTT---------------TGG-GGG-T-------A-TTTTACCCTCATG-ATTTA-GCTAAAT-ACCCCTTA------GTTTTC-AAAA-AA-TGGGGGT-AAATTTACCCCTTA-CTTT-T---AAA---A-GT-TGGG--GG----T---AA--AGTTA-C-TCC-TCCA----AA--------AC-AAA-------ATTTCTANACT-GA-----AA--TA-------TGA--------A--AAACC--TTG-----TTT---A------AAATACATGT----ATAA--TGATTTCATATCTTGNAGACCCGTGTGTC-------T-AGATAGCAAATGAAATT--GT--AAAT-TACT-----TAA-TC-----TAAATAA-----------T-A-------TTA-TG-TA---AGT-------AAGTAA-A---G-TTTT---------TAAC-T----GA----AA--------------TAAA-T----G--AAA---------AT-T-----------------------CT-----------T-----CATTA-C-CCNC----------AC---------CT----------GG--------GA----------G---TT-------AAA-T-----ACCCC-CAAT--CTTTTCAA-TTTTGGGGGTAAATTACCCTCTTATCAAAAA-AGT-TATCTGGGG
gi|1 : AGTGGCCCCGATAAGGTG--ATTTGGGTGGTTGTGGGGTTGG-GGG-TGATGGGTA-TTTTACCCATATG-GTATA-GCTAAAT-ACCCCTTA------GTTTTC-AAAA-A--TGGAGGT-GAATTTACATCTTA-CTTT-T---GAA---A-GT-TTGG--GG----T---AA--AGTTA-C-TCC-TCCA----AT--------AT-AAA-------TTTTCTGAACT-GA-----AA--TA-------TTA--------A--AACCC--TTG-----TTT---A------AAATACATGT----ATAA--TGATTTCATATCTTGGACACCAATGTGTC-------TTAGATAGCAAATGAAAGT--GT--AAAT-TACT-----TAA-TA-----CAAATGA-----------T-AATTTTTATTA-TG-TA---AGT-------TAGTAA-A---G-TTTTTAATTGACATAAA-T----GA----AAATTC----------TGAA-T----T--AAG---------AT-CTTAATGTATCTTACGACTGTATGCT-----------T-----CATTA-C-CCTC----------AC---------CTCT--------GAAAATCTCAGA----------G---TA-------AAA-T-----ACCCC-CA-T--CTTTTCAA-TTTTGGGGGTAAAATACCCTCTTATCAATAA-AGT-TATCTG
gi|10 : G-GTTCA-GTTAAAT-ATCCCATA------ATTTTC-AAAT-A--TGAAGTT-AAATTTACCACTTA-TCAT-A---AAA---A-GT-AGAGACGG----T--------GTTAAC-TCC-TCCC----AA--------AC-AAA-------ACTTCTGTACT-GA-----TA--TT-------TAA--------A--AAAAAAATCG-----ATT---G------AAATA----T----TTAA---AATT--ATATCTTGTAGACCCGTATATT-------T-AGAAAGCCAATGGCATG--GT--AAAT-TACT-----TAA-TC-----TAAAAAA-----------T-------------TG--A---AAT-------AAATAA-A---G-AATT---------TTAC-T----GA----AA--------------TAAA-T----G--CAA---------AT-T-----------------------CT-----------cagc
gi|10 : ---------CT----------GG--------AA----------A---TT-------AAAAT-----ACGAC--AAT--CTTTTCCA-TTTTGGGTTTAAATTATTCTTTCATTAAAAgaattttgcaataaacaaaggttgcgaacaatctttgactttataagtctttacccatatctctgaaaatctggaaattaaaatacgacaatcttttccattttgggtttaaattattctttcattaaaatgtcat
gi|11 : ggttcagttaaatatcccataattttcaaatatgaagttaaatttaccacttatcataaaaagtagagacggtgttaactcctcccaaacaaaacttctgtactgatatttaaaaaaaaaatcgattgaaatatttaaaattatatcttgtagacccgtatatttagaaagccaatggcatggtaaattacttaatctaaaaaattgaaataaataaagaattttactgaaataaatgcaaattctgaattttgcaataaacaaaggttgcgaacaatctttgactttataagtctttacccatatctctgaaaatGGCCCAGATAAGGTG--ATTT---------------TGG-GGG-T-------A-TTTTACCCTCATG-GTTTA-GCTAAAT-ACCCCTTA------GTTTTC-AAAA-T--TGGAGGT-AAAGTTACCCCTTA-CCTT-T---AAA---T-AT-AGGG--GG----T---AA--AGTTA-C-TCT-TCTC----AA--------AC-AAA-------ATTTCTATACT-GA-----AA--TA-------TGA--------A--AAACC--TTA-----TTT---A------GA----ATGT-----TA-------CTTATATCTTGTAGACCC-------------------------------TT--GT--AAAT-TACT-----AAA-CC-----CAAATCA-----------T-A-------TTA-TG-TA---TGTTA-----AAGTAC-A---G-TTTT---------TAAC-T----GA----AA--------------TACA-T----A--ACA---------AT-T-----------------------CT-----------C-----AATTtgtcat
gi|12 : T-ACCCCAGA------GCTT---GGGA-AA-TAAGGAT-ATATTTACTCTTTATCTTT-T---AAAGTGA-GA-TGGG--TG----T---AA--ACTTA-C-TCC-TTCC----AA--------AT-ATATCTTTCTGTTTCTATACT-GA-----AA--AA-------TGATTGCTCTGA--AAA-----TA-----TTTACCA------AAATAAA---------AG--TGATTTTATAttacaataaattataattttatcttaaacttaatgcttccttacccatatctctgaaaatctgggattgaatgccccct
gi|12 : G--------GA----------G---TA-------AAA-T-----GCTAT-CATT--GTTTT-GA-TTTTATGGGTACCTTACTCCTTCATCAAAC----TGTATCTGGGaatgaaataaaaaaaaattaggcgcgcacacaatatacttttactgtaaatgatcagtattacaatgaatctgagatcttgtgcctgtttatgcacatctttaaaactattggagtaaaatgctatcattgttttgattttatgggtaccttactccttcatcaaactgtatctgggactttggttaagta
gi|13 : taccccagagcttgggaaataaggatatatttactctttatcttttaaagtgagatgggtgtaaacttactccttccaaatatatctttctgtttctatactgaaaaatgattgctctgaaaatatttaccaaaataaaagtgattttataaatgaaataaaaaaaaattaggcgcgcacacaatatacttttactgtaaatgatcagtattacaatgaatctgagatcttgtgcctgtttatgcacatctttaaaactattCCTCGTG-GTTTA-GCTAAAT-ACTCCTTA------GTTTTC-AAAA-T--TGGAGGT-AAATTTACCCCTTA-CCTT-T---AAA---A-GT-AAGG--GA----T---AA--CGTTA-C-TCA-TCCC----AA--------AC-AAA-------ATATCTATACT-GA-----AA--TA-------CGA--------A--AAACC--TTG-----TTT---A------GA----ATGT-------A--TGACTT-ATATCTTGTAGACCC-------------------------------TT--GT--AAAT-TGCT-----GAA-CC-----TAAATAA-----------T-A-------TTA-TG-TACT-GGTATGTTA-AAGTAA-A---G-TTAT---------TAAC-TGTCAGA----AA--------------TATA-T----G--AAA---------AT-T-----------------------CT-----------actttggttaagta
gi|13 : -----------------------CT-----------T-----CCTTA-C-CCAT----------AT---------CT----------CT--------GA-----------------------AAA-TCTCACACTCC-CA-T--TTTTACTA-TTTTGGGGGTgaattttacaataaataatatttcatctttaactttaagcttccttacccatatctctgaaaatctcacactcccatttttactattttgggggt
gi|14 : cctcgtggtttagctaaatactccttagttttcaaaattggaggtaaatttaccccttacctttaaaagtaagggataacgttactcatcccaaacaaaatatctatactgaaatacgaaaaaccttgtttagaatgtatgacttatatcttgtagacccttgtaaattgctgaacctaaataatattatgtactggtatgttaaagtaaagttattaactgtcagaaatatatgaaaattctgaattttacaataaataatatttcatctttaactttaag-TTTT--CCTCATG-GTTTA-GCTTAAT-ACCATTTT------GTTTAC-AAAA-AA-TTGTATT-AAATCTACACTTTA-CTTTAT---AAA------T-TTGG--GA----T---AA--AA--A---------CA----AC--------AC-AGT-------ATCCTTAAAGT-GAGGGGTAAATTACTCCCTCTGA--------ATTAAATT--TTT-----TTTA--A------AAAGACTTGTTAAAATAAATTGATTTTATATTTT-AAGAAAGG-------------T-AAATA--AAATCAAA----GT--AAGTATACC-----TAA-TT-----TAAATAA-----------T-A-------TTA-TGTTA---A---------AAGTTA-ACTTA-TTTT---------TAATAT----G-----AA--------------TAAA-T----
gi|15 : tGTGGCCCAGAAATGATG--ATTT---------------TAG-GGG-T-------A-TTTTACCCTCATG-ATTTA-ACTAAAT-ACCCCTGA------GTTTTC-AAAA-AAATGGATGC-ACATTTACCCCTTA-CTTT-T---AAA---A-GT-TAAA--GT----T---AA--AGTTA-C-TCT-TCCA----AA--------AC-AAA-------TTTTGTGAACT-GA-----AA--TA-------TGA--------A--AAACCA-TTAATACATTT---A------AAATACACGT----ATAA--TGATTTCATATCTTGGAGACCCACTTGTC-------TTAGATAGAAAGTGAATTT--AT--AAAT-TTCT-----AAA-TC-----TAAATAA-----------T-A-------TTA-TG-TA---AAT-------AAGTAA-A---G-TTTT---------TAAC-T----GA----AA--------------TAAA-T----G--AAA---------AT-T-----------------------Cagtataggatatagatctgaattgtttaatgtactgattgta
gi|16 : A-C-TCC-TCCC----AA---------C-AAA-------AGTT--------GA-----AA--CA-------TGA--------A--AAACC--TTG-----TTT---A------GAATA----T----ATAA--C---TTTATATCTTTTAGACCCGTGTGTC-------A-GGGTAACAAGTGAAATT--GT--TAAT-TATT-----TTA-TC-----TAAATAA-----------T-A-------TTATTA-TACATAGT-------AAGTAA-T---G-TTTT---------TTAC-T----GA----AA--------------TAAA-A----G--AAA---------AT-T-----------------------CT-----------
gi|16 : c----------AT---------CT----------GG--------GA----------G---TT-------AAA-T-----ACCCC-CATT--GTTTCCAT-TTTGGGGGGTAAATTACCCTCATATTAAAAA-AGT-TATCTGGGgagttttacaagtagggttgtatcttagactgtttctttacctatgtctcagaaaatctgggagttaaatacccccattgtttccattttggggggtaaattaccctcatattaaaaaagttatctgggaca
gi|17 : cactcctcccaacaaaagttgaaacatgaaaaaccttgtttagaatatataactttatatcttttagacccgtgtgtcagggtaacaagtgaaattgttaattattttatctaaataatattattatacatagtaagtaatgttttttactgaaataaaagaaaattctgagttttacaagtagggttgtatcttagactgtttctttacctatgtctcagaaaAAAT-ACCCCTTAA-----GTTTTA-AAAA-AA-AAGGAGTTGCATTTACCCCTTA-CTTT-T---AAA---A-GT-TTGG--GG----T---AA--AGTTA-C-ACC-TGCA----AA--------AC-AAA-------TTTTCTGAAAT-GA-----AA--TA-------TAA--------A--AAACC--TTG-----TTT---A------GAATACATGT----ATAA--TGATTTCATATCTTGGAGACAAATGTGTCT------T-AGATAGCAAAAAAAAGT--GT--AAAT-TACT-----AAA-TC-----TAAA-AA-----------T-A-------TTA-TA-TA---AGT-------AAGTCA-A---G-TTTT---------TAAT-T----GA----AA--------------TAAA-T----G---AA---------GT-T-----------------------CT-----------aca
gi|18 : -------T-AGAAAACGAATGAAATCAAGT--CAAT-TACC-----TAA-TT-----TGA-TAA-----------T-A-------TTA-TG-CA---AAT-------GAGCAA-T---G--TTT---------TAAC-T----GA----AA--------------CAAA-T----T--GAC---------AT-T-----------------------CT-----------gaattttgcaataagtaagatt
gi|18 : aatgttccgtatataagatataatttgTTTCCG-TTCTAGGGCCAAACTATCCTCTTATCAGACA-A---CAGCTGGGGgatatattaattatacttagtgcaatagatagccatttacacttatcgttgaatatctgggagtaaaaggaattattatttccgttctagggccaaactatcctcttatcagacaacagctggggctctgttta
gi|19 : aatgttccgtatataagatataatttgtagaaaacgaatgaaatcaagtcaattacctaatttgataatattatgcaaatgagcaatgttttaactgaaacaaattgacattctgatatattaattatacttagtgcaatagatagccatttacacttatcgttgaatatctgggagtaaaaggaattattaAGAGGTCTGGATAAGGTG--ATTG---------------TGG-TGG-T-------A-TTTTACC---ATG-ATTTA-GCTAATT-ACTCCTTA------GTTTGA-AAAC-AA-TTGGGAT-ATATTTACCCCATAGCTTT-T---AAA---A-CT-T---------------------TTA-C-TCCTTCCA----AA--------AG-A-----------CTCTATATT-GA-----AA--TA-------TGG--------T--TATTC--TTA-----TTT---ATTTATCAGATACATGT----ATAA--TGA---CATActctgttta
gi|2 : ttaatttacaatacGTGGCCAAGATAAGGTG--ATTT---------------TTA-GGG-T-------A-TTTTACCTACATT-GTTTA-TCTCAAT-ACCCCTTA------GTTTTC-AAAA-T--TGGAGGT-CAATTTACCCCTTA-CTTT-T---AAA---A-GT-AAGG--AG----T---AA--AGTTG-C-TCT-TCAA----TT--------AC-AAG-------GTTTCTGAACA-AA-----AA--TA-------TGA--------A--AAGCC--TTG-----TTT---A------AAATACAAGT----AAAA--TGATTTTATATTTTGGAGACCCATGTGTCT------T-AGAAAGCAAATGGAAGT--GT--AAAT-TACT-----TAG-TT-----TATATAA-----------T-A-------TTA-TG-AA---AGT--------ATTAA-A---A-TTTT---------TAAT-T----TA----AA--------------TAAA-T----G--AAA---------Aaaatgaactcaaaatacaaaatttgaacttgttatattatgta
gi|2 : ATGAAAGT--ATTAAAAT-T-TT-----TAA-TT-----TAAATAAATGAAAAAATCTGA-------TTT-TG-GC---ACT-------AAGTAC-G---A-TTTTGGTG-----TATC-T----TACG--AC--------------TGTA-T----G-----------------------------------------CT-----------T-----CACTA-C-CCTC----------AC---------CT----------CT--------GAAATTCTCAAAG---TT-------AAA-T-----ACCCC-CA-T--CTTATAAA-TTTTTGGGGTAAAATACCCTCTTATCAATAA-AGT-TATCTaatctgattttggcactaagtacgattttggtgtatcttacgactgtatgcttcactaccctcacctctgaaattctcaaagttaaatacccccatcttataaatttttggggtaaaataccctcttatcaataaagttatcttgag
gi|20 : gtggccaagataaggtgatttttagggtattttacctacattgtttatctcaataccccttagttttcaaaattggaggtcaatttaccccttacttttaaaagtaaggagtaaagttgctcttcaattacaaggtttctgaacaaaaatatgaaaagccttgtttaaaatacaagtaaaatgattttatattttggagacccatgtgtcttagaaagcaaatggaagtgtaaattacttagtttatataatattA----------G---TT-------AAA-T-----GCCCT-AAA---CTTTTCCA-TTTTGAAGGTAAATTACTCTCTTGTTAAAAA-AAG-TATATGGGGtgag
gi|21 : attaaaataagattgcaatgtagccaagacttaatgcatctttgtccacatctcttaacatctc-T-----------------------TT-----------T-----CTTTA-C-CCTCGTGTTCGTAGAT---------CT----------GG--------GA----------G---TA-------AAAAT-----ACGCC-CA-C--CTTTACAT-TATTAGCAGTAAATTACCCTCATATCAATAA-A-T-TATCTGGGGcactgagcattaataaaatattatgacttttgaatgttaaattggtgtatttttaacaaaaaatgtgtttt
gi|22 : ttttaactagaacatacatgtgtaacacattagttttgattcatacattttcaaataatatagctagtgtttatattccG-GGG-T---------TGTTAGCCTAATG-ATTTA-GCTTGAT-AG---TT-------GTTTT--AAAA-AA-TAGGGGC-AAATCTTTCCCATA-CCTT-T---GAA---A-CT-AGGG--GG----T---AA--ATTGA-C-TCC-C-----------------AT-AAAT------GTATCTGAATT-G----------TA-------TTG--------A--AAACCGATTA-----CTT---A------Actctg
gi|23 : attagatgattatggtggcgaggaTTT-T---AAA---A-GT--AGA--GG----T---AA--AGTTG-C-TTT-TCTC----AA--------AC-AAA-------ATTTCTAAACT-GA-----AA--TA-------TAT--------A--AAGCC--CTG-----TTT---T------AAATACATG------TAA--T-ACTTTATAT
gi|24 : cacttacacatgtATAAAGTG--ACTT---------------TGG----------------------CTCATG-ATTAA-GCTAAAT-ACCCA-AA------GTTTTC-AAA---------GGT-AAA-----------------------------------G--GA----T---AA--ACTAA-T-TCT-TCC----------------C-AAA-------GTTTCTATACT-GG-----AC--TA-------Tat
gi|25 : ccagatttCATG-ATTTA-GCTAAAT-ACCTCTAA------GTT-----AAA-AA-TTGGACC-AAATTTACC----A-AACT-T---AAA---A-AC-TTGG--GG----T---AA--ATATA-C-CCA-TCa
gi|26 : ccaataaggtggtattgAAT-TAAT-----TAA-TT-----TAAACAA-----------T-A-------TCA-TG-TATTTGAT-------ATGCAAGA---GATTTT---------TAAC-T----GA----AA--------------TAAAGT----AGTAAA---------AC-T-----------------------CT-----------
gi|27 : -TTTTACCCCAATG-ATTTA-ACTA----------TA--------TTT---AAA-AC-TGGG--T-GAATTTACCTCTTA-CATT-T---AAA---A-GC-AGGG--AGAACAT---AA--TGATA-CTTCT-TCCA----AA--------gaaatttcaatttcctgattac
gi|28 : CCC-CAAT--ATTGTCAA-TTTTTGGGGTAAATTACTCTTTTGTTTAAAT-AAC-TATCTGGGGta
gi|29 : actcttcgaaaattaaggagcatatgtaAAATAAGTTG--GTTT---------------TTG-GAG-T-------AGTTTTACC-TCCTG-ATTTA-AGTAAAT-ACCTCTTA------GTTGTCTTGAA-AA-TGTGGGT-AAATTTTCTTCTTcactg
gi|3 : atGGCCCAGATAAGGTG--ATTT---------------GGG-GGG-T----------TTTACCCTCATG-ATTTA-ACTAAAT-ATCCCTTA------GTTTTT-AAAA-AA-TGGATGT-AAATTTACCTCTT-----T-T---AAA---A-GA-TGGG--GA----T---AA--AGTTA-C-TGT-TCCA----AT--------AC-AAA-------GTTTCTTTTTT-GA-----AA--TA-------TGA--------A--AAAGC--TTG-----TTT---A------AACTACATAT----ATAA--TGATTTCATATCTTGGAGACCCACTTGTCTTACCGGT-AGGTAGCAAATGAAAGT--GT--ACAT-TACT-----TAA-TCTACCTTAAATAA-----------T-A-------TTA-T--------GT-------AAGTAA-A---G--TTT---------TAAC-T----GA----TA--------------TAAA-T----G--AAA---------AT-T-----------------------CT-----------
gi|3 : TAAAGTAGAATTT---------------TGA-----T-------A-TTT----CTCATTTCTTTATGCTTCATTACCCTCTA-------CTCTG-AAAA-AC-TGAGAGTTGAAT--ACCCCCAT-CTTT-T---CAA---T-TT-TGGG--GG----T---AA--AA-TA-C-TCT-CTCA----AA--------AA-AAG-------ATATCTGGAgaattttgcactattaaagtagaattttgatatttctcatttctttatgcttcattaccctctactctgaaaaactgagagttgaatacccccatcttttcaattttgggggtaaaatactctctcaaaaaaagatatctgga
gi|3 : ggcccagataaggtgatttggggggttttaccctcatgatttaactaaatatcccttagtttttaaaaaatggatgtaaatttacctcttttaaaagatggggataaagttactgttccaatacaaagtttcttttttgaaatatgaaaaagcttgtttaaactacatatataatgatttcatatcttggagacccacttgtcttaccggtaggtagcaaatgaaagtgtacattacttaatctaccttaaataatattatgtaagtaaagttttaactgatataaatgaaaattctgaattttgcactat---------AT-G-----------------------CT-----------T-----CATTA-C-CCTCT---------ACTCTGAAAAACT----------GA--------GA----------G---TT-------GAA-T-----ACCCC-CA-T--CTTTTCAA-TTTTGGGGGTAAAATACTCTCTCA--AAAAA-AGA-TATCTGG
gi|30 : ggcccagataaggtgatttggggggttttaccctcatgatttaactaaatatcccttagtttttaaaaaatggatgtaaatttacctcttttaaaagatggggataaagttactgttccaatacaaagtttcttttttgaaatatgaaaaagcttgtttaaactacatatataatgatttcatatcttggagacccacttgtcttaccggtaggtagcaaatgaaagtgtacattacttaatctaccttaaataatattatgtaagtaaagttttaactgatataaatgaaaattctgaattttgcactattaaagtagaattttgatatttctcatttcttt----------AC---------CT----------GG--------GA----------G---TA-------AAAAT-----ACCCC---AC--TTATTCAG-TTTAAGAGGTAAACTACCCTCTTATAAAAa
gi|31 : ttgcaaGACCCAGACAATGTG--ATCT---------------TGT-GAA-C-------A-CTTTATATCCATA-ATTTA-ACTAAAT-ACCTTTCT------GATTT--AGAA-AA-TGGGGAT-ATAATTACCtgatgcatttgatctggtgctct
gi|32 : T--CTTTTCAA-ATTTTGATGTAAAATACCTTCATAT--AAAA-AAT-TATCTGGG
gi|33 : agaaaatctggggacaaaagaacaatttG--------GA----------G---TA-------AAA-TTA---ATCCCTCTATACCTTCTCAC-TTTATGAAGCAATCAACCCTGTTATCAATAT-AAT-TATCTGGGGcatt
gi|34 : AGGCAAGATA--ATTT---------------TGGTGGG-T-------A-TTT-ATCCGCATG-ATTCA-GCTAAAT-Actcaga
gi|36 : agatttca-------AAA-T-----ACTCT-CACT--TTTTT-AA-TTTATGGAGTAAATTATTCCCATAACAAAAACA---TACCTGGGGgtaaataaattatatcaaaaaa
gi|37 : gggtaaT-T---AAA---ATATATGGA--GG----T---AA--ATTTA-C-TTC-TCAA----AATTCTTGGAAG-AAA-------GTTTATATACT-GA-----AA--TA-------TGctctg
gi|38 : ttaacGGCCCAGATTAGGTG--ATTT---------------C-G-AGG-T-------A-CTTGACTCCAAAG-ACGTA-GCTATAT-ATCCATTG------GTTAT---AAA-AA-T
gi|39 : GGCCAAGATAATGTG--GTTT---------------TCG-GGA-T-------A-TTTTATCGTCATG-ATTTA-GCTTAAT-A-TCTGTA------GTTTTG-AAAA-t
gi|4 : gaAGTGGCCAAGATAATGTC--ATTT---------------TGG-GGGGT-------A-TTTTACCCTCATT-GTTTA-GCTAAAT-ACCACTTACATGTAGTTTTA-AAAA-AA-TGGAGGT-AAATTTACCCCTTA-CTTT-T---ATA---A-GT-TGGG--GG----T---AA--AGTTA-C-TCC-TCCA----AT--------AC-AAA-------TTTTCTAAACT-GA-----AA--TG-------TGA--------A--AAACT--TTG-----TTT---A------AAATACATGT----ATAA--TGATTTCATATCTTGGAGACCCATGTGTCT------T-AGATAGCAAATGAAAGT--TT--AAAT-TACT-----TTA-TC-----TAAATAA-----------T-A-------CTA-TT-TA---AGT-------AAGT---A---G-TTTT---------TAAC-T----AA----AA--------------TATA-T----A--AAA---------AT-T-----------------------CT-----------
gi|4 : -----------------------CT-----------T-----CATTA-C-CCTC----------AC---------CTCTGAAAATCTGG--------GA----------G---TT-------AAA-T-----------------CTTTTCAA-TTTTTGGAGTAAAATACCCTCTTATCAAAAA-TGT-TATCTGGAGgattaagtaagatttttaatgtattaatgtatgcttcattaccctcacctctgaaaatctgggagttaaatcttttcaatttttggagtaaaataccctcttatcaaaaatgttatctggagc
gi|41 : agtggccaagataatgtcattttggggggtattttaccctcattgtttagctaaataccacttacatgtagttttaaaaaaatggaggtaaatttaccccttacttttataagttgggggtaaagttactcctccaatacaaattttctaaactgaaatgtgaaaaactttgtttaaaatacatgtataatgatttcatatcttggagacccatgtgtcttagatagcaaatgaaagtttaaattactttatctaaataatactatttaagtaagtagtttttaactaaaatatataaaaattctgattaagtaagatttttaatgtattaatgtatg-------AAA-T-----ATCC-----T--TTTTTAAA-TTTTTGGGGTGAATTATCCTCTCATCAAAAG-AAT-TATCc
gi|42 : aagcaGTG--ATTC---------------TGG-GGG-T-------A-ATTTATCCTCATG-GTTTA-GCTAAAT-
gi|43 : tgaaccgaacataCCAGATAATATG--TTTT---------------TTA-GAG-T-------A-TTT-ACCCTGATG-ATTAA-ATCGAAT-ACC
gi|44 : GTGGCCAAGATAAGCTG--ATTT---------------TGT-GTG-T-------A-TTCTACCCTCATC-ATTTA-
gi|45 : -----TAA-TC-----TAAATCA-----------T-A-------TTG-CG-CA---AAC-------AAGTAA-A---G-cc
gi|46 : attatttacaaTTTTC-ATAA-T--TGGAGGT-AACTTTACCCCTTA-CCTT-A---AAA---A-GT-gt
gi|47 : GGGGGTAAATTACCCTCTTATTTTAAA-AGT-TATCTGGGGa
gi|5 : AGTGGCCCAGGTAAAGTG--ATTT---------------TGG-GGG-T-------A-TTTTACTCTCATG-CTATA-GCTAAAT-ACTCGCTA------GTTTTT--GAA-AA-TGGATGT-AAATTAACCTTTCA-A-TT-T---AAA---A-GT-AAGG--GG----T---CA--AGTTA-T-TCC-TCTC----AA--------AC-AAA-------ATTTTTATATA-TA-----AA--TA-------CGA--------G--AAACC--TTG-----TTT---G------AA----ATGT----ACGA--T-ATT--ATATCTTGTCGACCTGTGTGTC-------T-AGATAGCAAATGAAATT--GT--AATT-TACTTACAATAA-TC-----TAAATCA-----------T-A-------TTA-TG-CA---AGC-------AGGTAA-A---G-ATTT---------TAAA-T----GA----AA--------------TAAA-T----G--AAA---------Ac
gi|5 : -----------T-----CTTTA-C-CAAC----------AT---------CT----------GG--------GA----------G---TT-------AAA-T------CCCT-CAAA--CTTTTCCA-TTTGGGGGTTAAATTACTCTatttgaattttaataaataaaattgcaatgtatgtctgatgttatgcatctttaccaacatctgggagttaaatccctcaaacttttccatttgggggttaaattactct
gi|6 : agtggcccaggtaaagtgattttgggggtattttactctcatgctatagctaaatactcgctagtttttgaaaatggatgtaaattaacctttcaatttaaaagtaaggggtcaagttattcctctcaaacaaaatttttatatataaatacgagaaaccttgtttgaaatgtacgatattatatcttgtcgacctgtgtgtctagatagcaaatgaaattgtaatttacttacaataatctaaatcatattatgcaagcaggtaaagattttaaatgaaataaatgaaaaatttgaattttaataaataaaattgcaatgtatgtctgatgttatgcaCCTAGATAAAGTT--AATT---------------TGA-GTA-C-------A-TTTTACTCTCGTG-A-------------A----TTA------GTTT-----AA-AA-TGGCAGT-AAATTTGACGCTT----TT-A---AAA---A-AA-TGGC--TG----TGAAAA--AGT-A-T-CCC-TTCATTATAA--------ACTGAA-------ATTT-TATATTAGT-----AT--TA-------TGA--------A--AAGTT--GTG-----TTT---A------AAAAAAA-------A-AA--TGATTTTAC-TCTAAAAGAC--------------------ATA-----TGAAAT---------A---ACC-----TAAGTT-----TGAATAA-----------C-A-------TTA-TG-TA---AGT-------AAGAAA-G---A-TCTT---------TAAC-T----GA----AA--------------TAAA-T----A--GAA---------AC-T-----------------------CT-----------
gi|6 : T----------GA--------GA----------G---TT-------AAA-T-----AATGT-CGCT---TTTTCAT-CTTTGAGAATAAATTACCTTTGTAACAGGAA-A-T-TATCTGGGGgatggaactgttcaatttgctgattgcgacggattattgctatatttaggctgtttacaaacatcttcaagtttatgagagttaaataatgtcgctttttcatctttgagaataaattacctttgtaacaggaaattatctggggcg
gi|7 : cctagataaagttaatttgagtacattttactctcgtgaattagtttaaaatggcagtaaatttgacgcttttaaaaaaatggctgtgaaaaagtatcccttcattataaactgaaattttatattagtattatgaaaagttgtgtttaaaaaaaaaaatgattttactctaaaagacatatgaaataacctaagtttgaataacattatgtaagtaagaaagatctttaactgaaataaatagaaactctgatggaactgttcaatttgctgattgcgacggattattgctatatttaggctgtttacaaacatcttcaagtttaAGTGGCCCAGGTAAAGTG--ATTT---------------TGG-GGG-T-------A-TTTTACTCTCATG-CTAAA-GCATAAT-ACTCGCTA------GTTTTT-GATA-A--TGGATGT-AAATTAACCTTTCA-ATTT-----AAA---A-GT-AAGG--GG----T---CA--AGTTA-T-TCC-TCTG----AA--------AC-AAA-------ATTTCTATACA-GA-----AA--TA-------CGA--------G--AAACC--TTG-----TTT---G------AAAT----GT----ATGA--C-ATT--ATATCTTGTCGACCTGTGTGTC-------T-AGATAGCAAATGAAATT--GT--AC-T-TACAA----TAA-TC-----TAAATCA-----------T-A-------TTA-TG-CA---AGC-------AGGTAA-A---GATTTTAAATGAAA-TAAA-T----GA----AAAATTTGAATTTTAATAAA-T----A--AAATTGCAATGTATAT-----------------------CTGTTGTTATGCAT-----CTTTA-C-CAAC----------AT---------CT----------GG--------GA----------G---TT-------AAA-T------CCCT-CAAA--CTTTTCCA-TTTGGGGGTTAAATTACTCTcg
gi|8 : AGAGGCCCAGATAAGGTA--ATTT---------------TGG-GGG-T-------A-TTTTACCCACATG-ATTTA-ACTAAAT-ACCCCATA------GTTTTC-AAAA-AA-TGGGGGT-AAATTTACCCTTTA-ATTT-T---AAA---A-GT-TAGG--GG----T---AA--AGTTA-C-TCT-TCCA----AA--------AT-TAT-------ATTCCGAAACT-GA-----AA--TA-------TGA--------A--AAACC--TTG-----TAT---G------AAAAACATGA----ATAA--TAAGTTGGTATCTTGGAGACCCACGTGTCG------T-AGATAGCAAATGAAACT--GT--AAAT-TACT-----TAA-TC-----TAAATAA-----------T-A-------CAA-TG-TA---AGT-------AAGTAA-A---A-TTTT---------TAAC-T----GA----AT--------------TAAA-T----G--AAA---------AT-T-----------------------CT-----------T-----CATTA-C-TTGC----------AC---------CT----------GG--------GA----------G---TT-------AAA-T-----ATCCC-CAAT--CTTTTCAA-TTTTCGGGGTAAAATACCCTCTTAACAAAAA-AGT-TATCTAGAG
gi|9 : GTGGCCCAGATAAGGTA--ATTT---------------TGT-GGG-T-------A-TATTACCCCCAAT-ATTTA-GCTAAAT-ACCCCTTA------GTTTTT-AAAATAA---GGGGA-ACATTTACCCATTT-TCTT-TGAAAAA---A-AT---GG--GG----T---ATTTAGTTAAC-TCC-TTCC----AA--------AT-A-----------TTTTCAAC------------------------A--------A--AGATC--T-G-----TGT---A------AAA---A-------ATAG---GACTTTATAATATAAGGA-------------------AAATG--AAATAAAA----GT--AAAC-TACA-----TAA-TT-----TACGTTA-----------T-A-------TTA-TG-TA---ACTTTAACTGAAATAA-A------TTG---------AAAC-T----GACTGCAA--------------TGAA-TCTTAG--A--------------T-----------------------CT-----------TGTGCCTATTAACGCCAC----------AG---------CTTC--------AA--------TA----------GATCTTGATGTAAAAA-T-----ATCCC---AC--CTGTTAAAATTTTGGGGGTAAATAACCCTCTTAATAAAAATAG--TATCTTGGG
blockSeqs : GA . T G . G T T T CATGTA CT T AA T TCT A GAA GTG T ATG AC AACA GAA TT A T T ATTAT TTCTTGGA T TCTTTCTG T A GGGGT AT CTCCCTC TTGCTCTG TT AA ATACA ATTTATC T CTTGTTAAAA ATTG T T ACTTGTCTTACCGGT G TCAA TA A TACAA G TACCT ATGAAAAAATC G . T TT CAT TTAACTG G CTT AT AAATGAAA A GTCA CTGC AATTTGAATTTTAA G CTTAG TTGCAATGT A . GTTGTTATGCAT A G A GTGTTCGTAGATCTGG AATTCTCAAA ATC TGATGTAA A CTCACA TCTATAC A G C TG
blockSeqs : . . . . . . . . . A C . A T GCT . . . . AG . . . . A . . C . . TG T . . . . . . GA . ACCA T CACGTA TG T T ACTTGTCTT G TG . . A . . . . . . T TTT ATGTTA . . AT GGTG . . CG . . AGT . . . TGTGCC . . T TACTCTGAAAAACTGA . . T A TAA CATT . A T GT
blockSeqs : . . . . . . . . . . C . A . TC . . . . AG . . . . . . . C . . A T . . . . . . A . AA G CATGTA TG T T ATGTGTCTT A TT . . . . . . . . . T CT TA . . A . . . . . . G . . . C . . T ACCTCTGAAAATCTGG . . A A A CATT . G . GT
blockSeqs : . . . . . . . . . . C . A . CC . . . . TG . . . . . . . C . . A T . . . . . . . . G T CATGTA TG C A ATGTGTCTT G TT . . . . . . . . . T . . . . T . . . . . . A . . . T . . T AGCTTCAA . . T . G CAAT . G . AG
blockSeqs : . . . . . . . . . . C . A . CC . . . . AA . . . . . . . C . . A A . . . . . . . . A T CAAGTA TG T G ATGTGTCTT A TT . . . . . . . . . T . . . . T . . . . . . G . . . T . . T ATCTCT . . T . A CACT . A . AC
blockSeqs : . . . . . . . . . . C . A . CT . . . . TT . . . . . . . A . . A A . . . . . . . . A T CATATA TG C T ACGTGTCGT G TT . . . . . . . . . T . . . . T . . . . . . G . . . T . . A ATCTGG . . T . A CAAA . T . GA
blockSeqs : . . . . . . . . . . A . A . CT . . . . TA . . . . . . . A . . T A . . . . . . . . A T CATGTA TG C G GTATATTT G GT . . . . . . . . . C . . . . T . . . . . . G . . . T . . A ACCTCT . . A . G CGCT . G . AT
blockSeqs : . . . . . . . . . . A . C . CT . . . . TT . . . . . . . C . . A T . . . . . . . . A T CATGAA TG T G GTGTGTCA G GT . . . . . . . . . A . . . . T . . . . . . G . . . T . . G ACCTGG . . T . A CAAA . A . AT
blockSeqs : . . . . . . . . . . C . A . CT . . . . AA . . . . . . . A . . T A . . . . . . . . A T ATGTA TG T G GTGTGTCT G GT . . . . . . . . . G . . . . T . . . . . . T . . . T . . A ATCTGG . . A . A CAAT . T . GT
blockSeqs : . . . . . . . . . . C . A . CC . . . . AG . . . . . . . A . . G A . . . . . . . . A T ATGT TG C G GTGTGTCT G GT . . . . . . . . . T . . . . T . . . . . . G . . . T ATCTGG . . A . A AAT . G . AT
blockSeqs : . . . . . . . . . . T . C . AA . . . . TT . . . . . . . A . . A A . . . . . . . . A T ATGT TA C T GT G GT . . . . . . . . . T . . . . T . . . . . . G . . . ACCTGG . . T . A CAT . A . GT
blockSeqs : . . . . . . . . . . G . A . CA . . . . AG . . . . . . . C . . G T . . . . . . . . T A CATG A T A . . TT . . . . . . . . . C . . . . T . . . . . . G . . . . . T . A CAT . T . GT
blockSeqs : . . . . . . . . . . G . A . CT . . . . TG . . . . . . . A . . G T . . . . . . . . A T AAA C G T . . TT . . . . . . . . . C . . . . A . . . . . . A . . . . . T . A AAA . T . T
blockSeqs : . . . . . . . . . . A . A . CT . . . . TG . . . . . . . A . . A G . . . . . . . . A A GTA T T G . . CT . . . . . . . . . T . . . . T . . . . . . G . . . . . T . A CAC . T . T
blockSeqs : . . . . . . . . . . C . A . CC . . . . TG . . . . . . . A . . G T . . . . . . . . G . TT T . A . . T . . . . . . . . . C . . . . T . . . . . . A . . . . . T . A CAT . T . G
blockSeqs : . . . . . . . . . . T . A . AT . . . . AA . . . . . . . A . . T A . . . . . . . . A . AA C . . . . . . . . . . . . T . . . . . . . . . . . A . . . . . . . . AC . T . .
blockSeqs : . . . . . . . . . . T . A . AT . . . . TG . . . . . . . A . . A T . . . . . . . . G . TA G . . . . . . . . . . . T . . . . . . . . . . . G . . . . . AC . G . .
blockSeqs : . . . . . . . . . . C . A . TC . . . . AA . . . . . . . C . . A T . . . . . . . . G . AA . . . . . . . . . . . . . . . . . . . . . . . . . . T . G
blockSeqs : . . . . . . . . . . T . . . A . . . . TA . . . . . . . G . . A T . . . . . . . . A . . . . . . . . . . . . . . . G
blockSeqs : . . . . . . . . . . . . . . . . . . . T . . . . . . . A . . A A . . . . . G
blockSeqs : . . . . . . . . . . . . . . . . . . . A . . . . . . . C . . . A . . . . . C
blockSeqs : . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . G
blockSeqs : . . . . . . . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . .
blockSeqs : . . . . .
blockSeqs : . . .
blockSeqs : .
blockSeqCons : *************** ******* A* ******* ********* ************** *********************** ACCTGG************************************* CAAT***
originalCons : AGTGGCCCAGATAAGGTG--ATTT---------------TGG-GGG-T-------A-TTTTACCCTCATG-ATTTA-GCTAAAT-ACCCCTTA------GTTTTC-AAAA-AA-TGGGGGT-AAATTTACCCCTTA-CTTT-T---AAA---A-GT-TGGG--GG----T---AA--AGTTA-C-TCC-TCCA----AA--------AC-AAA-------ATTTCTANACT-GA-----AA--TA-------TGA--------A--AAACC--TTG-----TTT---A------AAATACATGT----ATAA--TGATTTCATATCTTGNAGACCCGTGTGTC-------T-AGATAGCAAATGAAATT--GT--AAAT-TACT-----TAA-TC-----TAAATAA-----------T-A-------TTA-TG-TA---AGT-------AAGTAA-A---G-TTTT---------TAAC-T----GA----AA--------------TAAA-T----G--AAA---------AT-T-----------------------CT-----------T-----CATTA-C-CCNC----------AC---------CT----------GG--------GA----------G---TT-------AAA-T-----ACCCC-CAAT--CTTTTCAA-TTTTGGGGGTAAATTACCCTCTTATCAAAAA-AGT-TATCTGGGG
finalCons : AGTGGCCCAGATAAGGTG--ATTT---------------TGG-GGG-T-------A-TTTTACCCTCATG-ATTTA-GCTAAAT-ACCCCTTA------GTTTTC-AAAA-AA-TGGGGGT-AAATTTACCCCTTA-CTTT-T---AAA---A-GT-TGGG--GG----T---AA--AGTTA-C-TCC-TCCA----AA--------AC-AAA-------ATTTCTANACT-GA-----AA--TA-------TGA--------A--AAACC--TTG-----TTT---A------AAATACATGT----ATAA--TGATTTCATATCTTGNAGACCCGTGTGTC-------T-AGATAGCAAATGAAATT--GT--AAAT-TACT-----TAA-TC-----TAAATAA-----------T-A-------TTA-TG-TA---AGT-------AAGTAA-A---G-TTTT---------TAAC-T----GA----AA--------------TAAA-T----G--AAA---------AT-T-----------------------CT-----------T-----CATTA-C-CCNCACCTGG-------------------------------------GA----------G---TT-------AAA-T-----ACCCCCAAT---CTTTTCAA-TTTTGGGGGTAAATTACCCTCTTATCAAAAA-AGT-TATCTGGGG
5 sequences could not be aligned to this reference sequence:
Unaligned ( gi|35 ): CTGAGAAATCCTCTGATTTCAAAACAAGTGTCAAACCCAGTCTTTGTTTATATTTTTGAATGTCCAAAATGTTTGTTT
Unaligned ( gi|40 ): ATCAATATACTAGGAAACTTATGCAAATGTCTACAGGAAAATAATTATCATAAATAGATGAAAATGA
Unaligned ( gi|48 ): CTGAAATTGTCTCAATAATATCTGTTATCCATTTTTTGT
Unaligned ( gi|49 ): CCTTACCCGATCAATAATCTGTTGATTTCTTTTGCTT
Unaligned ( gi|50 ): AAAATCTTGAAGAACTTTAATGTTTTAAAGCAAATGT
Alignments
lowQualScore : 111111111111111 2222222222222222 1111111 222222222 11111111111111 11111111111111111111111 11111111111111111 2222222222222222222222222222222222222222222 1111111111 1111111
lowQualScore : 22 111111111111111 1 1 5555555 1 1 1 1 666666 88 1 88 3 444 1 222 222 1 999 22 3333 222 22 3 1 1 66666 66666666 1 88888888 1 1 44444 22 5555555 77777777 22 77 55555 6666666666 1 6666666666 5555 4 1 5555555555555555 3 6666 33 2 77777 2 55555 99999999999 2 6666666 2 22 999 5555555 2 333 44 000000000 2 4444 7777 66666666666666 2 4444444 888888888 2 88888888888888888888888 11111111111111111 0 4 4 1 2222222222222222222222222222222222222222222 0000000000 444 66666666 6 888888 3333333 1 1 0 4 999
lowQualScore : .. ............... . . ....... . . . . ...... .. . .. . ... . ... ... . ... .. .... ... .. . . . ..... ........ . ........ . . ..... .. ....... ........ .. .. ..... .......... . .......... .... . . ................ . .... .. . ..... . ..... ........... . ....... . .. ... ....... . ... .. ......... . .... .... .............. . ....... ......... . ....................... ................. . . . . ........................................... .......... ... ........ . ...... ....... . . . . ...
lowQualScore : 55 444444444444444 7 7 7777777 6 4 4 4 000000 77 5 55 2 444 6 888 888 6 444 33 5555 999 33 2 6 6 22222 00000000 7 99999999 6 8 55555 55 9999999 22222222 88 55 00000 5555555555 4 0000000000 4444 6 0 8888888888888888 6 9999 11 1 00000 0 00000 55555555555 0 5555555 0 11 888 0000000 0 555 22 555555555 1 5555 4444 88888888888888 1 8888888 444444444 2 55555555555555555555555 00000000000000000 3 0 0 0 2222222222222222222222222222222222222222222 3333333333 111 99999999 3 555555 5555555 8 5 1 4 222
consensus : AGTGGCCCAGATAAGGTG--ATTT---------------TGG-GGG-T-------A-TTTTACCCTCATG-ATTTA-GCTAAAT-ACCCCTTA------GTTTTC-AAAA-AA-TGGGGGT-AAATTTACCCCTTA-CTTT-T---AAA---A-GT-TGGG--GG----T---AA--AGTTA-C-TCC-TCCA----AA--------AC-AAA-------ATTTCTANACT-GA-----AA--TA-------TGA--------A--AAACC--TTG-----TTT---A------AAATACATGT----ATAA--TGATTTCATATCTTGNAGACCCGTGTGTC-------T-AGATAGCAAATGAAATT--GT--AAAT-TACT-----TAA-TC-----TAAATAA-----------T-A-------TTA-TG-TA---AGT-------AAGTAA-A---G-TTTT---------TAAC-T----GA----AA--------------TAAA-T----G--AAA---------AT-T-----------------------CT-----------T-----CATTA-C-CCNC----------AC---------CT----------GG--------GA----------G---TT-------AAA-T-----ACCCC-CAAT--CTTTTCAA-TTTTGGGGGTAAATTACCCTCTTATCAAAAA-AGT-TATCTGGGG
Reference ( family-1918 ) : AGTGGCCCAGATAAGGTG--ATTT---------------TGG-GGG-T-------A-TTTTACCCTCATG-ATTTA-GCTAAAT-ACCCCTTA------GTTTTC-AAAA-AA-TGGGGGT-AAATTTACCCCTTA-CTTT-T---AAA---A-GT-TGGG--GG----T---AA--AGTTA-C-TCC-TCCA----AA--------AC-AAA-------ATTTCTANACT-GA-----AA--TA-------TGA--------A--AAACC--TTG-----TTT---A------AAATACATGT----ATAA--TGATTTCATATCTTGNAGACCCGTGTGTC-------T-AGATAGCAAATGAAATT--GT--AAAT-TACT-----TAA-TC-----TAAATAA-----------T-A-------TTA-TG-TA---AGT-------AAGTAA-A---G-TTTT---------TAAC-T----GA----AA--------------TAAA-T----G--AAA---------AT-T-----------------------CT-----------T-----CATTA-C-CCNC----------AC---------CT----------GG--------GA----------G---TT-------AAA-T-----ACCCC-CAAT--CTTTTCAA-TTTTGGGGGTAAATTACCCTCTTATCAAAAA-AGT-TATCTGGGG
gi|1 : AGTGGCCCCGATAAGGTG--ATTTGGGTGGTTGTGGGGTTGG-GGG-TGATGGGTA-TTTTACCCATATG-GTATA-GCTAAAT-ACCCCTTA------GTTTTC-AAAA-A--TGGAGGT-GAATTTACATCTTA-CTTT-T---GAA---A-GT-TTGG--GG----T---AA--AGTTA-C-TCC-TCCA----AT--------AT-AAA-------TTTTCTGAACT-GA-----AA--TA-------TTA--------A--AACCC--TTG-----TTT---A------AAATACATGT----ATAA--TGATTTCATATCTTGGACACCAATGTGTC-------TTAGATAGCAAATGAAAGT--GT--AAAT-TACT-----TAA-TA-----CAAATGA-----------T-AATTTTTATTA-TG-TA---AGT-------TAGTAA-A---G-TTTTTAATTGACATAAA-T----GA----AAATTC----------TGAA-T----T--AAG---------AT-CTTAATGTATCTTACGACTGTATGCT-----------T-----CATTA-C-CCTC----------AC---------CTCT--------GAAAATCTCAGA----------G---TA-------AAA-T-----ACCCC-CA-T--CTTTTCAA-TTTTGGGGGTAAAATACCCTCTTATCAATAA-AGT-TATCTG
gi|10 : G-GTTCA-GTTAAAT-ATCCCATA------ATTTTC-AAAT-A--TGAAGTT-AAATTTACCACTTA-TCAT-A---AAA---A-GT-AGAGACGG----T--------GTTAAC-TCC-TCCC----AA--------AC-AAA-------ACTTCTGTACT-GA-----TA--TT-------TAA--------A--AAAAAAATCG-----ATT---G------AAATA----T----TTAA---AATT--ATATCTTGTAGACCCGTATATT-------T-AGAAAGCCAATGGCATG--GT--AAAT-TACT-----TAA-TC-----TAAAAAA-----------T-------------TG--A---AAT-------AAATAA-A---G-AATT---------TTAC-T----GA----AA--------------TAAA-T----G--CAA---------AT-T-----------------------CT-----------cagc
gi|10 : ---------CT----------GG--------AA----------A---TT-------AAAAT-----ACGAC--AAT--CTTTTCCA-TTTTGGGTTTAAATTATTCTTTCATTAAAAgaattttgcaataaacaaaggttgcgaacaatctttgactttataagtctttacccatatctctgaaaatctggaaattaaaatacgacaatcttttccattttgggtttaaattattctttcattaaaatgtcat
gi|11 : ggttcagttaaatatcccataattttcaaatatgaagttaaatttaccacttatcataaaaagtagagacggtgttaactcctcccaaacaaaacttctgtactgatatttaaaaaaaaaatcgattgaaatatttaaaattatatcttgtagacccgtatatttagaaagccaatggcatggtaaattacttaatctaaaaaattgaaataaataaagaattttactgaaataaatgcaaattctgaattttgcaataaacaaaggttgcgaacaatctttgactttataagtctttacccatatctctgaaaatGGCCCAGATAAGGTG--ATTT---------------TGG-GGG-T-------A-TTTTACCCTCATG-GTTTA-GCTAAAT-ACCCCTTA------GTTTTC-AAAA-T--TGGAGGT-AAAGTTACCCCTTA-CCTT-T---AAA---T-AT-AGGG--GG----T---AA--AGTTA-C-TCT-TCTC----AA--------AC-AAA-------ATTTCTATACT-GA-----AA--TA-------TGA--------A--AAACC--TTA-----TTT---A------GA----ATGT-----TA-------CTTATATCTTGTAGACCC-------------------------------TT--GT--AAAT-TACT-----AAA-CC-----CAAATCA-----------T-A-------TTA-TG-TA---TGTTA-----AAGTAC-A---G-TTTT---------TAAC-T----GA----AA--------------TACA-T----A--ACA---------AT-T-----------------------CT-----------C-----AATTtgtcat
gi|12 : T-ACCCCAGA------GCTT---GGGA-AA-TAAGGAT-ATATTTACTCTTTATCTTT-T---AAAGTGA-GA-TGGG--TG----T---AA--ACTTA-C-TCC-TTCC----AA--------AT-ATATCTTTCTGTTTCTATACT-GA-----AA--AA-------TGATTGCTCTGA--AAA-----TA-----TTTACCA------AAATAAA---------AG--TGATTTTATAttacaataaattataattttatcttaaacttaatgcttccttacccatatctctgaaaatctgggattgaatgccccct
gi|12 : G--------GA----------G---TA-------AAA-T-----GCTAT-CATT--GTTTT-GA-TTTTATGGGTACCTTACTCCTTCATCAAAC----TGTATCTGGGaatgaaataaaaaaaaattaggcgcgcacacaatatacttttactgtaaatgatcagtattacaatgaatctgagatcttgtgcctgtttatgcacatctttaaaactattggagtaaaatgctatcattgttttgattttatgggtaccttactccttcatcaaactgtatctgggactttggttaagta
gi|13 : taccccagagcttgggaaataaggatatatttactctttatcttttaaagtgagatgggtgtaaacttactccttccaaatatatctttctgtttctatactgaaaaatgattgctctgaaaatatttaccaaaataaaagtgattttataaatgaaataaaaaaaaattaggcgcgcacacaatatacttttactgtaaatgatcagtattacaatgaatctgagatcttgtgcctgtttatgcacatctttaaaactattCCTCGTG-GTTTA-GCTAAAT-ACTCCTTA------GTTTTC-AAAA-T--TGGAGGT-AAATTTACCCCTTA-CCTT-T---AAA---A-GT-AAGG--GA----T---AA--CGTTA-C-TCA-TCCC----AA--------AC-AAA-------ATATCTATACT-GA-----AA--TA-------CGA--------A--AAACC--TTG-----TTT---A------GA----ATGT-------A--TGACTT-ATATCTTGTAGACCC-------------------------------TT--GT--AAAT-TGCT-----GAA-CC-----TAAATAA-----------T-A-------TTA-TG-TACT-GGTATGTTA-AAGTAA-A---G-TTAT---------TAAC-TGTCAGA----AA--------------TATA-T----G--AAA---------AT-T-----------------------CT-----------actttggttaagta
gi|13 : -----------------------CT-----------T-----CCTTA-C-CCAT----------AT---------CT----------CT--------GA-----------------------AAA-TCTCACACTCC-CA-T--TTTTACTA-TTTTGGGGGTgaattttacaataaataatatttcatctttaactttaagcttccttacccatatctctgaaaatctcacactcccatttttactattttgggggt
gi|14 : cctcgtggtttagctaaatactccttagttttcaaaattggaggtaaatttaccccttacctttaaaagtaagggataacgttactcatcccaaacaaaatatctatactgaaatacgaaaaaccttgtttagaatgtatgacttatatcttgtagacccttgtaaattgctgaacctaaataatattatgtactggtatgttaaagtaaagttattaactgtcagaaatatatgaaaattctgaattttacaataaataatatttcatctttaactttaag-TTTT--CCTCATG-GTTTA-GCTTAAT-ACCATTTT------GTTTAC-AAAA-AA-TTGTATT-AAATCTACACTTTA-CTTTAT---AAA------T-TTGG--GA----T---AA--AA--A---------CA----AC--------AC-AGT-------ATCCTTAAAGT-GAGGGGTAAATTACTCCCTCTGA--------ATTAAATT--TTT-----TTTA--A------AAAGACTTGTTAAAATAAATTGATTTTATATTTT-AAGAAAGG-------------T-AAATA--AAATCAAA----GT--AAGTATACC-----TAA-TT-----TAAATAA-----------T-A-------TTA-TGTTA---A---------AAGTTA-ACTTA-TTTT---------TAATAT----G-----AA--------------TAAA-T----
gi|15 : tGTGGCCCAGAAATGATG--ATTT---------------TAG-GGG-T-------A-TTTTACCCTCATG-ATTTA-ACTAAAT-ACCCCTGA------GTTTTC-AAAA-AAATGGATGC-ACATTTACCCCTTA-CTTT-T---AAA---A-GT-TAAA--GT----T---AA--AGTTA-C-TCT-TCCA----AA--------AC-AAA-------TTTTGTGAACT-GA-----AA--TA-------TGA--------A--AAACCA-TTAATACATTT---A------AAATACACGT----ATAA--TGATTTCATATCTTGGAGACCCACTTGTC-------TTAGATAGAAAGTGAATTT--AT--AAAT-TTCT-----AAA-TC-----TAAATAA-----------T-A-------TTA-TG-TA---AAT-------AAGTAA-A---G-TTTT---------TAAC-T----GA----AA--------------TAAA-T----G--AAA---------AT-T-----------------------Cagtataggatatagatctgaattgtttaatgtactgattgta
gi|16 : A-C-TCC-TCCC----AA---------C-AAA-------AGTT--------GA-----AA--CA-------TGA--------A--AAACC--TTG-----TTT---A------GAATA----T----ATAA--C---TTTATATCTTTTAGACCCGTGTGTC-------A-GGGTAACAAGTGAAATT--GT--TAAT-TATT-----TTA-TC-----TAAATAA-----------T-A-------TTATTA-TACATAGT-------AAGTAA-T---G-TTTT---------TTAC-T----GA----AA--------------TAAA-A----G--AAA---------AT-T-----------------------CT-----------
gi|16 : c----------AT---------CT----------GG--------GA----------G---TT-------AAA-T-----ACCCC-CATT--GTTTCCAT-TTTGGGGGGTAAATTACCCTCATATTAAAAA-AGT-TATCTGGGgagttttacaagtagggttgtatcttagactgtttctttacctatgtctcagaaaatctgggagttaaatacccccattgtttccattttggggggtaaattaccctcatattaaaaaagttatctgggaca
gi|17 : cactcctcccaacaaaagttgaaacatgaaaaaccttgtttagaatatataactttatatcttttagacccgtgtgtcagggtaacaagtgaaattgttaattattttatctaaataatattattatacatagtaagtaatgttttttactgaaataaaagaaaattctgagttttacaagtagggttgtatcttagactgtttctttacctatgtctcagaaaAAAT-ACCCCTTAA-----GTTTTA-AAAA-AA-AAGGAGTTGCATTTACCCCTTA-CTTT-T---AAA---A-GT-TTGG--GG----T---AA--AGTTA-C-ACC-TGCA----AA--------AC-AAA-------TTTTCTGAAAT-GA-----AA--TA-------TAA--------A--AAACC--TTG-----TTT---A------GAATACATGT----ATAA--TGATTTCATATCTTGGAGACAAATGTGTCT------T-AGATAGCAAAAAAAAGT--GT--AAAT-TACT-----AAA-TC-----TAAA-AA-----------T-A-------TTA-TA-TA---AGT-------AAGTCA-A---G-TTTT---------TAAT-T----GA----AA--------------TAAA-T----G---AA---------GT-T-----------------------CT-----------aca
gi|18 : -------T-AGAAAACGAATGAAATCAAGT--CAAT-TACC-----TAA-TT-----TGA-TAA-----------T-A-------TTA-TG-CA---AAT-------GAGCAA-T---G--TTT---------TAAC-T----GA----AA--------------CAAA-T----T--GAC---------AT-T-----------------------CT-----------gaattttgcaataagtaagatt
gi|18 : aatgttccgtatataagatataatttgTTTCCG-TTCTAGGGCCAAACTATCCTCTTATCAGACA-A---CAGCTGGGGgatatattaattatacttagtgcaatagatagccatttacacttatcgttgaatatctgggagtaaaaggaattattatttccgttctagggccaaactatcctcttatcagacaacagctggggctctgttta
gi|19 : aatgttccgtatataagatataatttgtagaaaacgaatgaaatcaagtcaattacctaatttgataatattatgcaaatgagcaatgttttaactgaaacaaattgacattctgatatattaattatacttagtgcaatagatagccatttacacttatcgttgaatatctgggagtaaaaggaattattaAGAGGTCTGGATAAGGTG--ATTG---------------TGG-TGG-T-------A-TTTTACC---ATG-ATTTA-GCTAATT-ACTCCTTA------GTTTGA-AAAC-AA-TTGGGAT-ATATTTACCCCATAGCTTT-T---AAA---A-CT-T---------------------TTA-C-TCCTTCCA----AA--------AG-A-----------CTCTATATT-GA-----AA--TA-------TGG--------T--TATTC--TTA-----TTT---ATTTATCAGATACATGT----ATAA--TGA---CATActctgttta
gi|2 : ttaatttacaatacGTGGCCAAGATAAGGTG--ATTT---------------TTA-GGG-T-------A-TTTTACCTACATT-GTTTA-TCTCAAT-ACCCCTTA------GTTTTC-AAAA-T--TGGAGGT-CAATTTACCCCTTA-CTTT-T---AAA---A-GT-AAGG--AG----T---AA--AGTTG-C-TCT-TCAA----TT--------AC-AAG-------GTTTCTGAACA-AA-----AA--TA-------TGA--------A--AAGCC--TTG-----TTT---A------AAATACAAGT----AAAA--TGATTTTATATTTTGGAGACCCATGTGTCT------T-AGAAAGCAAATGGAAGT--GT--AAAT-TACT-----TAG-TT-----TATATAA-----------T-A-------TTA-TG-AA---AGT--------ATTAA-A---A-TTTT---------TAAT-T----TA----AA--------------TAAA-T----G--AAA---------Aaaatgaactcaaaatacaaaatttgaacttgttatattatgta
gi|2 : ATGAAAGT--ATTAAAAT-T-TT-----TAA-TT-----TAAATAAATGAAAAAATCTGA-------TTT-TG-GC---ACT-------AAGTAC-G---A-TTTTGGTG-----TATC-T----TACG--AC--------------TGTA-T----G-----------------------------------------CT-----------T-----CACTA-C-CCTC----------AC---------CT----------CT--------GAAATTCTCAAAG---TT-------AAA-T-----ACCCC-CA-T--CTTATAAA-TTTTTGGGGTAAAATACCCTCTTATCAATAA-AGT-TATCTaatctgattttggcactaagtacgattttggtgtatcttacgactgtatgcttcactaccctcacctctgaaattctcaaagttaaatacccccatcttataaatttttggggtaaaataccctcttatcaataaagttatcttgag
gi|20 : gtggccaagataaggtgatttttagggtattttacctacattgtttatctcaataccccttagttttcaaaattggaggtcaatttaccccttacttttaaaagtaaggagtaaagttgctcttcaattacaaggtttctgaacaaaaatatgaaaagccttgtttaaaatacaagtaaaatgattttatattttggagacccatgtgtcttagaaagcaaatggaagtgtaaattacttagtttatataatattA----------G---TT-------AAA-T-----GCCCT-AAA---CTTTTCCA-TTTTGAAGGTAAATTACTCTCTTGTTAAAAA-AAG-TATATGGGGtgag
gi|21 : attaaaataagattgcaatgtagccaagacttaatgcatctttgtccacatctcttaacatctc-T-----------------------TT-----------T-----CTTTA-C-CCTCGTGTTCGTAGAT---------CT----------GG--------GA----------G---TA-------AAAAT-----ACGCC-CA-C--CTTTACAT-TATTAGCAGTAAATTACCCTCATATCAATAA-A-T-TATCTGGGGcactgagcattaataaaatattatgacttttgaatgttaaattggtgtatttttaacaaaaaatgtgtttt
gi|22 : ttttaactagaacatacatgtgtaacacattagttttgattcatacattttcaaataatatagctagtgtttatattccG-GGG-T---------TGTTAGCCTAATG-ATTTA-GCTTGAT-AG---TT-------GTTTT--AAAA-AA-TAGGGGC-AAATCTTTCCCATA-CCTT-T---GAA---A-CT-AGGG--GG----T---AA--ATTGA-C-TCC-C-----------------AT-AAAT------GTATCTGAATT-G----------TA-------TTG--------A--AAACCGATTA-----CTT---A------Actctg
gi|23 : attagatgattatggtggcgaggaTTT-T---AAA---A-GT--AGA--GG----T---AA--AGTTG-C-TTT-TCTC----AA--------AC-AAA-------ATTTCTAAACT-GA-----AA--TA-------TAT--------A--AAGCC--CTG-----TTT---T------AAATACATG------TAA--T-ACTTTATAT
gi|24 : cacttacacatgtATAAAGTG--ACTT---------------TGG----------------------CTCATG-ATTAA-GCTAAAT-ACCCA-AA------GTTTTC-AAA---------GGT-AAA-----------------------------------G--GA----T---AA--ACTAA-T-TCT-TCC----------------C-AAA-------GTTTCTATACT-GG-----AC--TA-------Tat
gi|25 : ccagatttCATG-ATTTA-GCTAAAT-ACCTCTAA------GTT-----AAA-AA-TTGGACC-AAATTTACC----A-AACT-T---AAA---A-AC-TTGG--GG----T---AA--ATATA-C-CCA-TCa
gi|26 : ccaataaggtggtattgAAT-TAAT-----TAA-TT-----TAAACAA-----------T-A-------TCA-TG-TATTTGAT-------ATGCAAGA---GATTTT---------TAAC-T----GA----AA--------------TAAAGT----AGTAAA---------AC-T-----------------------CT-----------
gi|27 : -TTTTACCCCAATG-ATTTA-ACTA----------TA--------TTT---AAA-AC-TGGG--T-GAATTTACCTCTTA-CATT-T---AAA---A-GC-AGGG--AGAACAT---AA--TGATA-CTTCT-TCCA----AA--------gaaatttcaatttcctgattac
gi|28 : CCC-CAAT--ATTGTCAA-TTTTTGGGGTAAATTACTCTTTTGTTTAAAT-AAC-TATCTGGGGta
gi|29 : actcttcgaaaattaaggagcatatgtaAAATAAGTTG--GTTT---------------TTG-GAG-T-------AGTTTTACC-TCCTG-ATTTA-AGTAAAT-ACCTCTTA------GTTGTCTTGAA-AA-TGTGGGT-AAATTTTCTTCTTcactg
gi|3 : atGGCCCAGATAAGGTG--ATTT---------------GGG-GGG-T----------TTTACCCTCATG-ATTTA-ACTAAAT-ATCCCTTA------GTTTTT-AAAA-AA-TGGATGT-AAATTTACCTCTT-----T-T---AAA---A-GA-TGGG--GA----T---AA--AGTTA-C-TGT-TCCA----AT--------AC-AAA-------GTTTCTTTTTT-GA-----AA--TA-------TGA--------A--AAAGC--TTG-----TTT---A------AACTACATAT----ATAA--TGATTTCATATCTTGGAGACCCACTTGTCTTACCGGT-AGGTAGCAAATGAAAGT--GT--ACAT-TACT-----TAA-TCTACCTTAAATAA-----------T-A-------TTA-T--------GT-------AAGTAA-A---G--TTT---------TAAC-T----GA----TA--------------TAAA-T----G--AAA---------AT-T-----------------------CT-----------
gi|3 : TAAAGTAGAATTT---------------TGA-----T-------A-TTT----CTCATTTCTTTATGCTTCATTACCCTCTA-------CTCTG-AAAA-AC-TGAGAGTTGAAT--ACCCCCAT-CTTT-T---CAA---T-TT-TGGG--GG----T---AA--AA-TA-C-TCT-CTCA----AA--------AA-AAG-------ATATCTGGAgaattttgcactattaaagtagaattttgatatttctcatttctttatgcttcattaccctctactctgaaaaactgagagttgaatacccccatcttttcaattttgggggtaaaatactctctcaaaaaaagatatctgga
gi|3 : ggcccagataaggtgatttggggggttttaccctcatgatttaactaaatatcccttagtttttaaaaaatggatgtaaatttacctcttttaaaagatggggataaagttactgttccaatacaaagtttcttttttgaaatatgaaaaagcttgtttaaactacatatataatgatttcatatcttggagacccacttgtcttaccggtaggtagcaaatgaaagtgtacattacttaatctaccttaaataatattatgtaagtaaagttttaactgatataaatgaaaattctgaattttgcactat---------AT-G-----------------------CT-----------T-----CATTA-C-CCTCT---------ACTCTGAAAAACT----------GA--------GA----------G---TT-------GAA-T-----ACCCC-CA-T--CTTTTCAA-TTTTGGGGGTAAAATACTCTCTCA--AAAAA-AGA-TATCTGG
gi|30 : ggcccagataaggtgatttggggggttttaccctcatgatttaactaaatatcccttagtttttaaaaaatggatgtaaatttacctcttttaaaagatggggataaagttactgttccaatacaaagtttcttttttgaaatatgaaaaagcttgtttaaactacatatataatgatttcatatcttggagacccacttgtcttaccggtaggtagcaaatgaaagtgtacattacttaatctaccttaaataatattatgtaagtaaagttttaactgatataaatgaaaattctgaattttgcactattaaagtagaattttgatatttctcatttcttt----------AC---------CT----------GG--------GA----------G---TA-------AAAAT-----ACCCC---AC--TTATTCAG-TTTAAGAGGTAAACTACCCTCTTATAAAAa
gi|31 : ttgcaaGACCCAGACAATGTG--ATCT---------------TGT-GAA-C-------A-CTTTATATCCATA-ATTTA-ACTAAAT-ACCTTTCT------GATTT--AGAA-AA-TGGGGAT-ATAATTACCtgatgcatttgatctggtgctct
gi|32 : T--CTTTTCAA-ATTTTGATGTAAAATACCTTCATAT--AAAA-AAT-TATCTGGG
gi|33 : agaaaatctggggacaaaagaacaatttG--------GA----------G---TA-------AAA-TTA---ATCCCTCTATACCTTCTCAC-TTTATGAAGCAATCAACCCTGTTATCAATAT-AAT-TATCTGGGGcatt
gi|34 : AGGCAAGATA--ATTT---------------TGGTGGG-T-------A-TTT-ATCCGCATG-ATTCA-GCTAAAT-Actcaga
gi|36 : agatttca-------AAA-T-----ACTCT-CACT--TTTTT-AA-TTTATGGAGTAAATTATTCCCATAACAAAAACA---TACCTGGGGgtaaataaattatatcaaaaaa
gi|37 : gggtaaT-T---AAA---ATATATGGA--GG----T---AA--ATTTA-C-TTC-TCAA----AATTCTTGGAAG-AAA-------GTTTATATACT-GA-----AA--TA-------TGctctg
gi|38 : ttaacGGCCCAGATTAGGTG--ATTT---------------C-G-AGG-T-------A-CTTGACTCCAAAG-ACGTA-GCTATAT-ATCCATTG------GTTAT---AAA-AA-T
gi|39 : GGCCAAGATAATGTG--GTTT---------------TCG-GGA-T-------A-TTTTATCGTCATG-ATTTA-GCTTAAT-A-TCTGTA------GTTTTG-AAAA-t
gi|4 : gaAGTGGCCAAGATAATGTC--ATTT---------------TGG-GGGGT-------A-TTTTACCCTCATT-GTTTA-GCTAAAT-ACCACTTACATGTAGTTTTA-AAAA-AA-TGGAGGT-AAATTTACCCCTTA-CTTT-T---ATA---A-GT-TGGG--GG----T---AA--AGTTA-C-TCC-TCCA----AT--------AC-AAA-------TTTTCTAAACT-GA-----AA--TG-------TGA--------A--AAACT--TTG-----TTT---A------AAATACATGT----ATAA--TGATTTCATATCTTGGAGACCCATGTGTCT------T-AGATAGCAAATGAAAGT--TT--AAAT-TACT-----TTA-TC-----TAAATAA-----------T-A-------CTA-TT-TA---AGT-------AAGT---A---G-TTTT---------TAAC-T----AA----AA--------------TATA-T----A--AAA---------AT-T-----------------------CT-----------
gi|4 : -----------------------CT-----------T-----CATTA-C-CCTC----------AC---------CTCTGAAAATCTGG--------GA----------G---TT-------AAA-T-----------------CTTTTCAA-TTTTTGGAGTAAAATACCCTCTTATCAAAAA-TGT-TATCTGGAGgattaagtaagatttttaatgtattaatgtatgcttcattaccctcacctctgaaaatctgggagttaaatcttttcaatttttggagtaaaataccctcttatcaaaaatgttatctggagc
gi|41 : agtggccaagataatgtcattttggggggtattttaccctcattgtttagctaaataccacttacatgtagttttaaaaaaatggaggtaaatttaccccttacttttataagttgggggtaaagttactcctccaatacaaattttctaaactgaaatgtgaaaaactttgtttaaaatacatgtataatgatttcatatcttggagacccatgtgtcttagatagcaaatgaaagtttaaattactttatctaaataatactatttaagtaagtagtttttaactaaaatatataaaaattctgattaagtaagatttttaatgtattaatgtatg-------AAA-T-----ATCC-----T--TTTTTAAA-TTTTTGGGGTGAATTATCCTCTCATCAAAAG-AAT-TATCc
gi|42 : aagcaGTG--ATTC---------------TGG-GGG-T-------A-ATTTATCCTCATG-GTTTA-GCTAAAT-
gi|43 : tgaaccgaacataCCAGATAATATG--TTTT---------------TTA-GAG-T-------A-TTT-ACCCTGATG-ATTAA-ATCGAAT-ACC
gi|44 : GTGGCCAAGATAAGCTG--ATTT---------------TGT-GTG-T-------A-TTCTACCCTCATC-ATTTA-
gi|45 : -----TAA-TC-----TAAATCA-----------T-A-------TTG-CG-CA---AAC-------AAGTAA-A---G-cc
gi|46 : attatttacaaTTTTC-ATAA-T--TGGAGGT-AACTTTACCCCTTA-CCTT-A---AAA---A-GT-gt
gi|47 : GGGGGTAAATTACCCTCTTATTTTAAA-AGT-TATCTGGGGa
gi|5 : AGTGGCCCAGGTAAAGTG--ATTT---------------TGG-GGG-T-------A-TTTTACTCTCATG-CTATA-GCTAAAT-ACTCGCTA------GTTTTT--GAA-AA-TGGATGT-AAATTAACCTTTCA-A-TT-T---AAA---A-GT-AAGG--GG----T---CA--AGTTA-T-TCC-TCTC----AA--------AC-AAA-------ATTTTTATATA-TA-----AA--TA-------CGA--------G--AAACC--TTG-----TTT---G------AA----ATGT----ACGA--T-ATT--ATATCTTGTCGACCTGTGTGTC-------T-AGATAGCAAATGAAATT--GT--AATT-TACTTACAATAA-TC-----TAAATCA-----------T-A-------TTA-TG-CA---AGC-------AGGTAA-A---G-ATTT---------TAAA-T----GA----AA--------------TAAA-T----G--AAA---------Ac
gi|5 : -----------T-----CTTTA-C-CAAC----------AT---------CT----------GG--------GA----------G---TT-------AAA-T------CCCT-CAAA--CTTTTCCA-TTTGGGGGTTAAATTACTCTatttgaattttaataaataaaattgcaatgtatgtctgatgttatgcatctttaccaacatctgggagttaaatccctcaaacttttccatttgggggttaaattactct
gi|6 : agtggcccaggtaaagtgattttgggggtattttactctcatgctatagctaaatactcgctagtttttgaaaatggatgtaaattaacctttcaatttaaaagtaaggggtcaagttattcctctcaaacaaaatttttatatataaatacgagaaaccttgtttgaaatgtacgatattatatcttgtcgacctgtgtgtctagatagcaaatgaaattgtaatttacttacaataatctaaatcatattatgcaagcaggtaaagattttaaatgaaataaatgaaaaatttgaattttaataaataaaattgcaatgtatgtctgatgttatgcaCCTAGATAAAGTT--AATT---------------TGA-GTA-C-------A-TTTTACTCTCGTG-A-------------A----TTA------GTTT-----AA-AA-TGGCAGT-AAATTTGACGCTT----TT-A---AAA---A-AA-TGGC--TG----TGAAAA--AGT-A-T-CCC-TTCATTATAA--------ACTGAA-------ATTT-TATATTAGT-----AT--TA-------TGA--------A--AAGTT--GTG-----TTT---A------AAAAAAA-------A-AA--TGATTTTAC-TCTAAAAGAC--------------------ATA-----TGAAAT---------A---ACC-----TAAGTT-----TGAATAA-----------C-A-------TTA-TG-TA---AGT-------AAGAAA-G---A-TCTT---------TAAC-T----GA----AA--------------TAAA-T----A--GAA---------AC-T-----------------------CT-----------
gi|6 : T----------GA--------GA----------G---TT-------AAA-T-----AATGT-CGCT---TTTTCAT-CTTTGAGAATAAATTACCTTTGTAACAGGAA-A-T-TATCTGGGGgatggaactgttcaatttgctgattgcgacggattattgctatatttaggctgtttacaaacatcttcaagtttatgagagttaaataatgtcgctttttcatctttgagaataaattacctttgtaacaggaaattatctggggcg
gi|7 : cctagataaagttaatttgagtacattttactctcgtgaattagtttaaaatggcagtaaatttgacgcttttaaaaaaatggctgtgaaaaagtatcccttcattataaactgaaattttatattagtattatgaaaagttgtgtttaaaaaaaaaaatgattttactctaaaagacatatgaaataacctaagtttgaataacattatgtaagtaagaaagatctttaactgaaataaatagaaactctgatggaactgttcaatttgctgattgcgacggattattgctatatttaggctgtttacaaacatcttcaagtttaAGTGGCCCAGGTAAAGTG--ATTT---------------TGG-GGG-T-------A-TTTTACTCTCATG-CTAAA-GCATAAT-ACTCGCTA------GTTTTT-GATA-A--TGGATGT-AAATTAACCTTTCA-ATTT-----AAA---A-GT-AAGG--GG----T---CA--AGTTA-T-TCC-TCTG----AA--------AC-AAA-------ATTTCTATACA-GA-----AA--TA-------CGA--------G--AAACC--TTG-----TTT---G------AAAT----GT----ATGA--C-ATT--ATATCTTGTCGACCTGTGTGTC-------T-AGATAGCAAATGAAATT--GT--AC-T-TACAA----TAA-TC-----TAAATCA-----------T-A-------TTA-TG-CA---AGC-------AGGTAA-A---GATTTTAAATGAAA-TAAA-T----GA----AAAATTTGAATTTTAATAAA-T----A--AAATTGCAATGTATAT-----------------------CTGTTGTTATGCAT-----CTTTA-C-CAAC----------AT---------CT----------GG--------GA----------G---TT-------AAA-T------CCCT-CAAA--CTTTTCCA-TTTGGGGGTTAAATTACTCTcg
gi|8 : AGAGGCCCAGATAAGGTA--ATTT---------------TGG-GGG-T-------A-TTTTACCCACATG-ATTTA-ACTAAAT-ACCCCATA------GTTTTC-AAAA-AA-TGGGGGT-AAATTTACCCTTTA-ATTT-T---AAA---A-GT-TAGG--GG----T---AA--AGTTA-C-TCT-TCCA----AA--------AT-TAT-------ATTCCGAAACT-GA-----AA--TA-------TGA--------A--AAACC--TTG-----TAT---G------AAAAACATGA----ATAA--TAAGTTGGTATCTTGGAGACCCACGTGTCG------T-AGATAGCAAATGAAACT--GT--AAAT-TACT-----TAA-TC-----TAAATAA-----------T-A-------CAA-TG-TA---AGT-------AAGTAA-A---A-TTTT---------TAAC-T----GA----AT--------------TAAA-T----G--AAA---------AT-T-----------------------CT-----------T-----CATTA-C-TTGC----------AC---------CT----------GG--------GA----------G---TT-------AAA-T-----ATCCC-CAAT--CTTTTCAA-TTTTCGGGGTAAAATACCCTCTTAACAAAAA-AGT-TATCTAGAG
gi|9 : GTGGCCCAGATAAGGTA--ATTT---------------TGT-GGG-T-------A-TATTACCCCCAAT-ATTTA-GCTAAAT-ACCCCTTA------GTTTTT-AAAATAA---GGGGA-ACATTTACCCATTT-TCTT-TGAAAAA---A-AT---GG--GG----T---ATTTAGTTAAC-TCC-TTCC----AA--------AT-A-----------TTTTCAAC------------------------A--------A--AGATC--T-G-----TGT---A------AAA---A-------ATAG---GACTTTATAATATAAGGA-------------------AAATG--AAATAAAA----GT--AAAC-TACA-----TAA-TT-----TACGTTA-----------T-A-------TTA-TG-TA---ACTTTAACTGAAATAA-A------TTG---------AAAC-T----GACTGCAA--------------TGAA-TCTTAG--A--------------T-----------------------CT-----------TGTGCCTATTAACGCCAC----------AG---------CTTC--------AA--------TA----------GATCTTGATGTAAAAA-T-----ATCCC---AC--CTGTTAAAATTTTGGGGGTAAATAACCCTCTTAATAAAAATAG--TATCTTGGG
5 sequences could not be aligned to this reference sequence:
Unaligned ( gi|35 ): CTGAGAAATCCTCTGATTTCAAAACAAGTGTCAAACCCAGTCTTTGTTTATATTTTTGAATGTCCAAAATGTTTGTTT
Unaligned ( gi|40 ): ATCAATATACTAGGAAACTTATGCAAATGTCTACAGGAAAATAATTATCATAAATAGATGAAAATGA
Unaligned ( gi|48 ): CTGAAATTGTCTCAATAATATCTGTTATCCATTTTTTGT
Unaligned ( gi|49 ): CCTTACCCGATCAATAATCTGTTGATTTCTTTTGCTT
Unaligned ( gi|50 ): AAAATCTTGAAGAACTTTAATGTTTTAAAGCAAATGT