lowQualScore : 11111111111111111111111111111111111111111111111111111111111 1111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 1 33333333333333333333333333333333333333333333333333333333333 1 11 2222222 1 1111111111111111111 1111111 1 1 11 66666666666666666 111 3333333333333333 5555555555 22222 44444 11 1 1 22 11 4444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444 1 1 1 1111111111 11 1 11 11 11 111111 22222
lowQualScore : 1 0 6666 2 5 55555555555555555555555555555555555555555555555555555555555 5 5 0 2 2 2 00 2222222 22 2 2 4 6666666666666666666 22 22 2 666 2 2 2 2 8888888 1 2 5 1 33 2 77 7 5 55555555555555555 555 1111111111111111 555 1111111111 0 0 66666 99999 44 0 555 99 99 0 00 7 999 1 3 6 6 999 7 6 88 7 11 6666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666 555 3 4 4 6 3 0 555 0 4444444444 33 00 44 3 1 8 66 33 00 44 8 000000 88888 44 3 4
lowQualScore : . . .... . . ........................................................... . . . . . . .. ....... .. . . . ................... .. .. . ... . . . . ....... . . . . .. . .. . . ................. ... ................ ... .......... . . ..... ..... .. . ... .. .. . .. . ... . . . . ... . . .. . .. ........................................................................................................................................... ... . . . . . . ... . .......... .. .. .. . . . .. .. .. .. . ...... ..... .. . .
lowQualScore : 5 3 1111 7 7 44444444444444444444444444444444444444444444444444444444444 0 0 5 1 5 2 66 3333333 99 1 8 1 3333333333333333333 99 88 0 444 0 0 0 5 7777777 1 2 1 3 44 0 44 1 0 11111111111111111 999 2222222222222222 888 5555555555 9 7 99999 00000 66 3 888 22 77 3 88 4 111 5 5 7 7 888 0 3 44 0 00 7777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777 444 6 8 7 2 1 0 111 9 2222222222 99 55 22 4 0 3 11 00 77 77 3 666666 22222 22 3 0
consensus : AAGTGGCGTAA----TGCCCATTTTT-CACTGTA--TT---T-------A--A--AAATT-AAGCGAA--AAAA--AAG----CATATAG---G-T-CTAAAGGTTGTGGTAAATAATGGC-TAACGACCCATTA-TTCCCAA------CTCTACCTGCCA--CGAGTTCGA-AATAATAATCTTC-------------------CAA--AAT--A-T-CATT-TT-TCT-TATTTCACTGGCCCAGTCAAA-TAAGAAAAACGA--AGGTTCCGTTAATTNCCGATATGAACCGAAGA--CG-GNTTT-GCCG-ATTTCCGTGAATCACG-C-GN--ACA--CATAATCA---CGCGCGCAACAAACGCTGGATACTTACTCGTTTCACGTCG--TT--TTTTCATTT---ACA--TACACTCTTTCACGAAGAAGACGGTCACTTNTATNGACTAAAAATACTT-ACCGAT-G-CCATTTCTGTTCCTTTT-TGCGTAGAATTGTTGACGAAAGNGTTGTTT----------------TGA------------------A------------------AATGTA-----------A---CT---TTA------GGN--------------AT-------------AA--------------ATTATGCAA---ATTAGATCGTGCAAGCGTTTACGGAACTGCCC-GAATCA-CGGCGAAGTC--TTTTGAAACCGAAACCGAAATGN--T------TTT--TT-A--TTATTCGTATTTCTCTATTTCTAATACATTTTCT-TCAAGTTTT-TATGCGACAATAACAGTTTTAACTGCACAGCAACCGACCAGAGCGAAATTAGCTC---TTATTATGACATTCACCGGTAAACAC-GTAGAATGCCG-TAAGATGGGCATNACGCC
Reference ( gi|1 ) : AAATGGTGTAA----TGCCCATTTAT-CACTGTATTTT---TTTC----A--A--AAAAT-AAGCGGGGGAAAA--AAG----CA----A---G-T-CTAAAGGTTATGGTAAATAATGGC-TAACGACCCATTA-TTCACAT------CTCTACCTGCCA--CGAGTTCGA-AAAAATAATTTTC-------------------CAA--AAT--A-T-CATT-TT-TCT-TATTTCACTAGCTTAATCAAA-TAAGAATAACAA--AGGTTCAGTTCGTTTCCGATGTGAACCGAAG---CG-GTTTTAAACG-ATTTACGTGAATCACG-T-GG--ACA--AATAATTA---TGTATGCAACAAACACTGGGTAGTCAATCGTTTCACGTTGCTTT--TTTTCATTT---ACA--TACACTCTTTCACGAAGCGGACGGTCACTTGTATAAACTAAAAATA-TT-ACCGAT-A-CAATTTATGTTCCTTTCATGCGTAGATTTGTTGACGAAAGTATTGTTT----------------AAA------------------A------------------AAT--------------A---CT---TTA------GGA--------------AC-------------AA--------------ATTATGCAA---ATTCGATCGCGCAAGCGTTTACGGAACAGCCC-GAATCA-CGGCGAAATC--TTTTGAAACCGAAACTAAAATGC--T------TTT--TC-A--TTACTCGTATTTCTCTATTTCTAATATAGTTTCC-TCAAAATTG-TATGCATCAATAACAGTTTAAACTGCACAGCAACCGACCAGAGCGAAATTAGCTC---TTATTATGACATTCACCGGTAAACGC-A-AGAATGTCG-TAAGATGGGCATTACGCC
gi|3 : AAGTGGTGTAA----TGCCCATTTAT-CACTGTATTTT---TTTTTATAA--A--AAAAT-AAGTGA---AAAA--AAG----TATATAG---G-T-CTAAAAATTGTGGTAAATAATGGC-TAACGACCCATTA-TTCCCAT------TTCTACCTGTCA--CGAGTTCGA-AATAATAATCTTC-------------------CAA--AAT--A-T-CATT-TT-TCT-TATTCCACTAGCCTAGTCAAA-TAAGAAAAACGA--CGGTTCCGTTCATTTCAGATGTGACCCGAAG---CG-GGTTTTGCCG-ATTTCCGTGAATCACA-C-GG--GCA--AATAATTA---TGCAGGTAACAAACACTGTGTATTTACTCGTTTCACGTT-TTTT--TTTCCATTT---ACA--TACACTCTTTCACGAAGCAGACGGCCACTTATATAAACTAAAAATA-CT-ACCGAT-A-TAATTTCTGATCCTTTTATGCGTAGATTTGTTGACGAAAGTATTGTTC----------------AGA------------------A------------------AAT--------------G---CT---TTA------GGA--------------AT-------------AA--------------ATTATGCAA---ATTAGATCATG--------------------C-GAATAA-CGGCGAAGTC--TTTTGAAACCGAAACTAAAATGCTTT------TTT--TT-A--TTACTCGTATTTCTCTATTTCTAATATATTTTCT-TCAAAAGTG-TATGCATCAATAACAGTTTAAACTGCACAGCAACGGACCAGAGCGAAATTAGCTC------TTATGACATTCACCACTAAACAC-A-AGACTGCCG-TAAGATGGGCATTACGCC
gi|4 : tgAAGTGATGTAA----TGCCCATTTAC-TACTGTAATTT---TTTT----A--A--AAATT-AAGTGA---AAAA--AAG----CATATTG---G-T-CTAAAGGTTGTGGTAAATAATTGC-AAATGATCCATTA-TTCCCAA------CTCTAGCTGCAA--CGAATTCGA-AATAATAATCTTC-------------------CAA--AGT--A-T-CATT-TT-TCT-TATTCCACTAGTCTAGTCAAAATAAGAAAAAAAAGAAGGTTCCATTCATTTCCGATGTGAACAGAAG---CG-GTGTTTGCTG-ATTTCCATGAATAACG-TTGG--A-A--CATAATTA---TGCAAAGAACAAACACTGGGTATTCAATCGTTTCACGGTGTTTTATTTTTCATTT---ACA--TACACTCTTTCACGTAGTAGACGGTCACTTGTATAGACTAAAAATA-CT-GTCAATGA-CA-TATCTGTTCCTTT---ACGTAGATTTGTTGACAAAAGTGTTGTTT----------------TGA------------------A------------------AAT--------------A---CT---TTA------GGA--------------AT-------------AA--------------ATTATGAAA---ATTAGATCGTGCAAGCGTTTACGGAACTGCTC-GAATCA-CGGCAAAGTC--CTTTGAAATCGAAACTAAAATGC--T------TTT--TTTA--TTACTCGTATTTGTCTATTTCTAATATATTTTCT-TCAACTTTT-TATGCAGCAATAACAATTTAAACTGCACAGCAGCCGACCAGAGCGAAATCAGCTT---TTATTATGACATTCACCAGTAAACAC-A-AGAA
gi|5 : AAGTGACGTAA----TGCCCATTTTTTCACTATA---------------------AAATT-AAGCGGG---AAA--AGG----CGTAT-A---G-TTCTAAAGGTTATG-----------C-TAGCAACCCATTA-TTCCCAA------CTCCACCTGCTA--CGAGTTCGA-AATAATAATCTTC-------------------TAA--AAT--A-T---TT-TT-TTT-TGT----CTGACCCAGTGAAA-TAAGAAAAACGA--TGGTTCCGTTAACTGCCGATATGAATTGAAGA--CG-GGTTT---TGTATTT-----AATCACG-C--C--ACA--CATTATCA---TG-GCGTAAT--GCACTGGATACTTACTCGTTTCTCATCA---T--TTTTCATTT---ACATTTACACTCTTTCACGATGAAGACGGTCACCTTTATTGACTCAAATGC-TC-AATTAT-G-CCATTTCTGTTCCCTTTTTGCGTAGAATTGTTGACATAAGAGTTGTTT----------------TGA------------------C------------------AATGTACCTTCA-----A---CT---TCT------GGA--------------ACATTGCTTGAGCATAA--------------ATTGCGGAA---GCTAGATCGTGCAAGCGTTTACAGAACTGACC-GAGTCA-CGACGTACT---TTTTGAAACCGATCCCGAAACGT--T------TTT--TA-A---TATTCGTATTTCTCTGTTCCTAATACATTTTTC-TCAAGTTTT-TATGCGACAATAACAGTTTTAACTGCACAGGTACCGACCAGCGCGAAATTAGCTC---T---------------CGGTAAACAC-GTAGAATGTTG-AAAGATGGGCAGAACGTC
gi|9 : taAAGTGATGTAA----TACCCATTTTT-GACTGTA
gi|20 : taAAGTGGTGTAA----TGCCCATCTTT-CACTGTG---------------------AAACT-GGGCGAA--AAAA--AAG----CATAGAG---G-T-CTAAAGGTTGTGATAAATAATGGC-TAACGACCCATTA-ATACCAA------CTGTACCTGCCA--CGAGTTCGA-AATAATAATCTTT-------------------CAA--AAT--A-T-CATTGTT-TCT-TATTTCACTGCCCTAGTCAAA-CAAGAAAAACGA--AGGTTCCGTTAATTTCCGATATaaataattacaatccactatttgtaactcttcctgccatgagttagaaataataatcttccaaaatatttttgttcttatttgacctagtgaaataaaaaaacacattaattaccaatatgaaccaaagatggtatttactgatttccgtgaattatgctggatatatcatttcatgtccttttttatttacacacactttcacaaagaagactaaaaatacttagcgatgccatttctgtttcatttttgcatagaattgttgacaaaagaactattttgaaaatctaactttaatatgggtataaattatacaaatttgatcatgcaagcgtttatggaactgccccaaatcacggagagggcttttgaaaccgtaaccgaaaagatgttttattattttctatttctaatacattttctataagtctttatgcgacaataataggtttaacttcactataaccaaccagagcaaaattataaaattcaccggtaaacacatagaagctgtaagatgagcata
gi|21 : AAATGGTGTAA----TGCCCATAAAT-CACTGTATTTT---TTAT----A--A--AAATT-AAGCGAA--AAAA--AAC----CATAT-A---GAT-CTAAAGGTTGTGGTAAATAATGGC-TAACGACCTATTA-TTCCCAT------CTCTACCTGCCA--CGAGTTCGA-TATAATAAGCTTC-------------------CAA--AA---A-T--ATT-TA-TCTCTATT
gi|16 : aAAATGGCGTAACTTTTGCC-ATT----CACAATATTTAAAATAAC----G--AT-AAAATTAAGCG----AAAT--AGG----CATATAG---G-T-CTAAAGGATGTGGTACATAACGGC-TAACGACCCATTATTTCATA-------CTCTACCTGTCA--CGAGTTCGA-ACAAATAATCTTC-------------------C---------------TT-TTATTT-TATTT
gi|6 : gggcatacttttgtatacataaaccttttttgattggtcgtaacgtcaaaaatgttacagttattaacggtttttgacgtcatgaagcaacggttcccaaatAGTGACGTAA----TGCCCATTTTTTCACTATA---------------------AAATT-AAGCGGG---AAA--AGG----CGTAT-A---G-TTCTAAAGGTTATG-----------C-TAGCAACCCATTA-TTCCCAA------CTCCACCTGCTA--CGAGTTCGA-AATAATAATTTTC-------------------CAA--AAT--A-T-T-TT-TT-TTT-TGT----CTGACCCAGCGAAA-TAAGAAAAACGA--TGGTTCTGTTAACTGCCGATATGAATTGAAGA--CG-GGTTT---TGTATTT-----AATCACG-C--C--ACA--CATTATCA---TG-GCGTAAT--GCACTGGATACTTACTCGTTTCTCATCA---T--TTTTCATTT---ACATTTACACTCTTTCACGATGAAGACGGTCACTTTTATTGACTCAAATGC-TC-AATTAT-G-CCATTTCTGTTCCCTTTTTGCGTAGAATTGTTGACATAAGAGTTGTTT----------------TGA------------------C------------------AATGTA-----------A---CT---TCAACTTCTGGA--------------ACATTGCTTGAGTATAA--------------ATTGTGGAA---GCTAGATCGTGCAAGCGTTTACGGAACTGACC-GAGTCA-CGACGTACT---TTTTGAAACCGATCCCGAAACGT--T------TTT--TT-A--TTATTCGTATTTCTCTGTTTCTAATACATTTTTC-TCAAGTTTT-TATGCGACAATAACAGTTTTAACTGCACAGGTACCGACCAGCGCGAAATTAGCTC---T---------------CGGTAAACAC-GTAGAATGTTG-TAAGATGGACAtttaatgaccctagaaattaaaaaaatc
gi|13 : AATGACGTTA----GGCTCACTTTT-CATTGTAAATT---T-------------------AAGCGTT----AA--AAG----CATATAG---G-T-AAAAAGGTTGTGG-AAATAA-AACATAACTACCCGTTA-TTCCCAA------CTCTATATGCAA--CGAAGTTGA-ACTAATAATCTTC-------------------CAA--AAT--A-A-CATT-T----T-CATTTGACTGAATCAGTGAAA-TCAGAAAAATGA--ATGTTCTGTTAATTACCGATATGAACTGAAAATTC---TTTTTGTCG-ATTC-CGTGAATCACGCT-AC--ACATTAA-AATGG---CGTA------ATACTCTTTATATTCACTCATTTAACATCGGTTT--TT---ATTTGTAATA--AATATTCTTTAACGAAGAAGACGGTTAgaacgt
gi|32 : AGTGACGTTA----TGTCCATTTTT-CACTGT-------------------A--AAATT-AAGTGTT---AAA--AAG----CAT---ATCTG-T-CTAAAGGTTGTGaa
gi|23 : TGACGTTA----TGCCCATTT-T-CCCTGTA---------------------AAATT-AAGCTAA--AACA--AAG----CATACAG---G-T-CTTAAGGTT---GTAAAAAATGGC-TAAAGACCTATTA----ATATTAGTTACTCTACCTGCCA--CGAGTTCGA-AATAATAATCTTC-------------------CAA--AAT--A-T-
gi|22 : TGACGTTA----TGCCCATTT-T-CCCTGTA---------------------AAATT-AAGCTAA--AACA--AAG----CATACAG---G-T-CTTAAGGTT---GTAAAAAATGGC-TAAAGACCTATTA----ATATTAGTTACTCTACCTGCCA--CGAGTTCGA-AATAATAATCTTC-------------------CAA--AAT--A-T-ttgccgatttgttaacatgtttg
gi|17 : TGGTGTTA----TGCCCATATTT-CACTGTAAATT---TG-C----A--GCTGAATT-GAGCGG---AAAAGGAAG----CATATAG---G-T-CTAAAGGCTGTGGTAACTAATGGC--AA------AATA-T---CAT------TTTT-CTT--------AGT-------AAATA----TT-------------------CAATCAATCAA-T-CA----A-TCT-TAGTTAACTGCCCCTGTCAAA--------AATGA--AGGTTCTGTTAATTGCCGATATTAATCAAAG---ttgccgatttgttaacatgtttga
gi|35 : tTGGTGTAA----TGCCCATTTAT-CACTGTAtcgaccatgggaacatcgttaggccatttccgtctatgtatggaatgataaccttaaaatacccatcttatatc
gi|2 : taaggTT---TTTC----ACTAT-AAAATGAAGCGAATAAAAA--AAG----CA-------------TACATGCC----TAAATTATGGT-TAACGACCCATTT-TTTCTAA------CTCTACCTGTCA--CAAGTTCAA-AATAACAATCTTC-------------------CAA--AAT--ATT-TTTT-TT-TCT-TATTTGGCTGACACAGCGGAA-TAAGAAAAACGA--AGGTTCCGTTAATTACCGATATGAACCGAAG---AGAGTTTTGACCG-ATTTCCGTGAATCACG-C--T--ACA--CATTATCACGGTGTATT------ACACTGAATACTCA----TTTCACATCG---T--TATTGATTT---ACA--TAGACTCTTTCACGAAGAAGGTGGTCA-----A-AAAATAAAAATACTT-ACTGAT-G-CCATTTCTGTTCATATTGTGCGCAGAATTGCTGACAAAAGTGTTGTTT----------------TGA------------------A------------------AATGTACCTTCA-----A---CT---TCA------GGAAAATTGCTTTTGACAT-------------AA--------------ATTATGCAA---ATGAGATCGTGCAGGCGAT--CGT------------TCA-CGATGACGTA--TTTTGAGTCTGAAACTGATACGG--TATTATGTTT--TT-A--TTATTCGTGTTTCTCTATTTCTAATACATTTTCT-TCAAGTTTG-TATGCGACAATAATAATTTTAACTGTACAGCAACCAACCAGAGCGAAATTAGCTC---TTATTATGACATTCACCGGTTAACACGG-ACACTGCTG-TAAGATGGGTATAACGTC
gi|11 : agtgacgttataaccaac--A--AAATT-AAGC-----AAAATGAAGTATACA----G---G-T-CTAAAGGTTGTGGTAA----TGGC-TAACAACCTATTA-TTGCCAA------CTCCACATGCCC--TGAGTTTGA-AATAATAATTTTC-------------------CAA--AAT--A-T-TATT-TT-TC--TACTTATCTGACCCAGTGAAA-TAAGAAGATTGA--AGGTTCCGTTAATTACCGATATGAATCGTAGA--TG-GGTTT-ACCA-ATTTCTGTG---CATG-T-CGCTACA--CATTATCA---CA-GTGTAAC--ACGATGGAAACATACTCATTTCACATCG---T--TTTTCATTT---ACA--TACACTCTTTCACGAAGAAGACTG--ACTTTTATTAACTTAATATA-CTAACAGAT-G-TCATTTCTGTTCTTTTT-TGTGTAAAATTTTTGAAGAAAGAGTTGTTT----------------TGA------------------A------------------AATGTATCTTCAACTTAA---CT---TTA------GGC--------------TT-------------AA--------------ATTTTGCAA---ATTAGACCATGCAAGTG
gi|7 : tAA--AAT----TA----A---GGT-CTTAAGTTTGTGTTAAATAATGGC-TAACGACCCATCA-TTTTCAA------CTAAACCGGTTATTCGAGTTCGA-AATAATAATCTTC-------------------CAA--AAT--A---CTTT-TT-T-----TTTGACTGACCCAGTGAAT-TAAGAAAAACGA--AGGTTCCGTT-ATTGCCGATATGAACCGAAG-------------ACG-ATTTCCGTGAATCACGCT-GT--ACA----TTGTCA---CG---GCATAACACGCTGTATACATACTCATTTCATAT---------------------CA--TACACTCTTTCATGATGAAGACGGTCACTTTTATTGACTTAAA-TACTT-ACCGAT-TTCAATTC-TGTTCTTTTT-TGTGTAGAAATGCTGAAGAAAGAGTTGTTTTGTTTTTCAACTTTCGAAA------------------C------------------ATT--------------G---CT---TTG------GTC--------------AT-------------AA--------------ATTATGCAA---ATTAGGTCGCGTTAGCGTTTACGGAACTGCCC-GAACCAACGCCTAAGTTATTTTTGAAACCGAAACTGTAATGA--T------TTT--TT-A--TTACTCGTATTTCTCTATTTCTAATATATTTTCT-TC-AAGTTGTTATACGACAATAATAGTTTTAAATACACAGCAATCAACTAGAGCGAAATTAGCTCCTATTGTTATGACTTTCGCCGGCAAACAA-ATAAAATGCTG-TAAGATGGGCAT
gi|19 : ctaattttcagtgtA----G---G-T-CTAAAGGATGTGACAAATAATGGC-TAATGACCCATTA-TTCCCAA------TTGTACTTGCCA--CGAGTTCGA-AATAATAATCTTC-------------------CGA--AAT--A-T-CATA-TT-TCT-TATTTCACTAGCCTAGTCAAA-TAAAAAGAACGA--ATGTTCCGTTAATTTGCGAT----------A---CG-ATTT--GCCG-ATTTATGTGAATCACG-T-GG--ATA--ATTAATTA---CGCATGCAACAAAagcatc
gi|9 : tatatAAATAAT----TA-CAATCCACTA-TTTGTAA------CTCTTCCTGCCA--TGAGTTAGA-AATAATAATCTTC-------------------CAA--AAT--A-T-TTTT-GT-TCT-TATTTGACC----TAGTGAAA-TAAAAA-AACA--------CA-TTAATTACCAATATGAACCAAAGA--TG-GT---------ATTTAC-TGATTTCCG-T-G-----------AATTA---TG-------------CTGGATA-T--ATCATTTCATGTC-CTTT--TTT--ATTT---ACA--CACACT--TTCACAAAG---------------A-AGACTAAAAATACTT-AGCGAT-G-CCATTTCTGTTTCATTTTTGCATAGAATTGTTGACAAAAGAACTATTT----------------TGA------------------A------------------AATCTA-----------A---CT---TTAATATG-GGT--------------AT-------------AA--------------ATTATACAA---ATTTGATCATGCAAGCGTTTATGGAACTGCCCCAAATCA-CGGAGAGGGC--TTTTGAAACCGTAACCGAAAAGA--T------GTT--TT-A--TTA-------TTTTCTATTTCTAATACATTTTCT-ATAAGTCTT-TATGCGACAATAATAGGTTTAACTTCACTATAACCAACCAGAGCAAA-------------ATTATAAAATTCACCGGTAAACAC-ATAGAA-GCTG-TAAGATGAGCATt
gi|10 : taaagtgatgtaatacccatttttgactgtaAACAATCCACTA-TTTGTAG------CTCTTCCTGCCA--TGAGTTAGA-AATAATAATCTTC-------------------CAA--AAT--A-T-TTTT-GT-TCT-TATTTGACC----TAGTGAAA-TA-GAAAAACA--------CA-TTAATTACCAATATGAACCAAAGA--TG-GT---------ATTTAC-TGATTTCCG-T-G-----------AATTA---TGT-------------TGGATA-T--ATCATTTCATGTCG---T--TTTTCATTT---ACA--CACACACTTTCACAAAG---------------A-AGACTAAAAATACTT-AGCGAT-G-CCATTTCTGTTTCATTTTTGCATAGAATTGTTGACGAAAAAACTGTTT----------------TGA------------------A------------------AATCTA-----------A---CT---TTAATTTG-GGT--------------AT-------------AA--------------ATTATACAC---ATTTGATCATGCAAGCATTTATGGAACTGCCCCAAATCA-CGACGAGGGC--TTTTGAAACCTTAACCGAAATGA--T------GTT--TT-A--TCATT--------TCTATTTCTAATACATTTTCT-ATAAGTCTT-TATGAGACAATAATAGGTTTAACTTCACTATAACCAACCAGAGCAAAATTA--TC-----------AAATTCACCGGTAAAC-C-ATAGAA-GCTG-TAAGATGAGCATa
gi|8 : cA-TTCCCAT------CTCTACCTGC-----------------AATAATCTTC-------------------CAA--AGT--A-T-CATT-TT-TCT-TATTTCACTAGTCTAGACAAA-TAAGAA-AACGA--AGGTTTCGTTCATTTCCGATGTGAACCGAAA---CA-GATTTTGCTG-ATTTCCGTGAATCACG-T-GG--GCA--AATAATTA---TGCATGCAACAAACACTGGGTATTCACTCGTTTTACGTT---TT--TTTTCATTT---ACA--TACACTCTTACACGAAGCAGACGATCATTTGTATAGACTTAAAATA-CT-ACCGAT-A-CAATGTGTGTTCCTTTTATTCGTAGATTTGTTGACGAAAATTTTGTTT----------------AGA------------------A------------------AAT--------------G---CT---TTA------GGA--------------AT-------------AA--------------GTTATGCAA---ATTAGATCGTGCAAGCGCTTACGAAACAGCTC-GTATCA-CGACGAAGTC--TTTTGAAACCGAAACTAAAATGCT-T------TTT--TT-A--TTACTCGTATTTCTCTATTTCTAATATATTTTCT-TCAAAATTG-TATGCATCAACAACAGTTTAAACTGCACAGCAACGGATCAGAGCGAAATTAGCTC---TTGTTATGACATTCACCGGTAAACGC-A-AGAATGCCG-TTAGATGGACaat
gi|13 : CA--CGGAATCGACAAAAAGAATTTTCAGTTCATATCGGTAATTAACAG--AAC--A-TTCATT-TT-TCT-GATTTCACTGATTCAGTCAAA-TGAAAAT
gi|5 : aatgacgttaggctcacttttcattgtaaatttaagcgttaaaagcatataggtaaaaaggttgtggaaataaaacataactacccgttattcccaactctatatgcaacgaagttgaactaataatcttccaaaataac--A-T-CGTT-TT-TCT-TATTTCACTGGGTCAGACAAA-AAAAAATAaatcacgctacacattaaaatggcgtaatactctttatattcactcatttaacatcggtttttatttgtaataaatattctttaacgaagaagacggttaaa
gi|10 : taaagtgacgtaatgcccattttttcactataaaattaagcgggaaaaggcgtatagttctaaaggttatgctagcaacccattattcccaactccacctgctacgagttcgaaataataatcttctaaaaTT-TT-TCT--ATTTCACTAG----GTCAAA-TAAGAACAAAAA--ggttccgttaactgccgatatgaattgaagacgggttttgtatttaatcacgccacacattatcatggcgtaatgcactggatacttactcgtttctcatcatttttcatttacatttacactctttcacgatgaagacggtcacctttattgactcaaatgctcaattatgccatttctgttccctttttgcgtagaattgttgacataagagttgttttgacaatgtaccttcaacttctggaacattgcttgagcataaattgcggaagctagatcgtgcaagcgtttacagaactgaccgagtcacgacgtactttttgaaaccgatcccgaaacgttttttaatattcgtatttctctgttcctaatacatttttctcaagtttttatgcgacaataacagttttaactgcacaggtaccgaccagcgcgaaattagctctcggtaaacacgtagaatgttgaaagatgggcagaacgtc
gi|9 : caacaatccactatttgtagctcttcctgccatgagttagaaataataatcttccaaaataT-TT-TTT-TATTTCACTAG----GTCAAA-TAAGAACAAAAA--cacattaattaccaatatgaaccaaagatggtatttactgatttccgtgaattatgttggatatatcatttcatgtcgtttttcatttacacacacactttcacaaagaagactaaaaatacttagcgatgccatttctgtttcatttttgcatagaattgttgacgaaaaaactgttttgaaaatctaactttaatttgggtataaattatacacatttgatcatgcaagcatttatggaactgccccaaatcacgacgagggcttttgaaaccttaaccgaaatgatgttttatcatttctatttctaatacattttctataagtctttatgagacaataataggtttaacttcactataaccaaccagagcaaaattatcaaattcaccggtaaaccatagaagctgtaagatgagcataat
gi|12 : taaagtgatgtaatacccatttttgactgtaaaataattacaatccactatttgtaactcttcctgccatgagttagaaataataatcttccaaaataAAACGCTGGGTACTTACTCGTCACACATGG---T--TTTTCATTT---ACA--TAC--TCTTTCACGAAGCAGACGGTCACCTGTATTGACTAAAAATACTT-ACCGAT-G-CCATTTCTGTTCTTGTTTTGCGTTGATTTGATGATGGAAGTGTTGTTTTC--------------AAATTGTATCTTCAACTTCCGG------------------AAT--------------ATCGCT---ATA------GGA--------------AT-------------AA--------------CTTATGCAA---AGTAGATCGTGC----GTTTACGGAACTGCCC-GAATAA-CGGCGAAGTC--TTTTCAAACCGAAACTAAAATGT--T------TCTTATT-A--TTACCCGTATTTCTCTATTTCTTATATATTTTCT-TCAAcacattaattaccaatatgaaccaaagatggtatttactgatttccgtgaattatgctggatatatcatttcatgtccttttttatttacacacactttcacaaagaagactaaaaatacttagcgatgccatttctgtttcatttttgcatagaattgttgacaaaagaactattttgaaaatctaactttaatatgggtataaattatacaaatttgatcatgcaagcgtttatggaactgccccaaatcacggagagggcttttgaaaccgtaaccgaaaagatgttttattattttctatttctaatacattttctataagtctttatgcgacaataataggtttaacttcactataaccaaccagagcaaaattataaaattcaccggtaaacacatagaagctgtaagatgagcata
gi|15 : gctacacattatcacggcgtaACTAAAA-TA-TTTACCGAT-G-CCAGTTCTGTTATTTT---GCATAGAATAATTGATGAAAGAGATGTTT----------------TGA------------------A------------------AATGTATATCA------A---CT---TCC------GGT--------------AC-------------AATGCGTTGGGCATAGATTTTGCAACTAAT---ATCGTGCATGCGTTTACGAACCTGCTA-GAATCA-CAGCATCGTC--TTTTGAAACTGAAACTAAA---------------T--TA-AGGTT--TCGTATTTCTCTATTCCTTATACA-TTGCCGTCACGTTTT-TATGCGACAATTACAGTTTTAACTGCACAGCAACCGACAAAAGCGAAAGTAGCTC---TTATTATTACATTCATCtttt
gi|14 : attgTGTTCCTTTT-TGCATAGATTTGATGACAAAAGT--TGTTTTG--------------AAA------------------ATGTATCTTCAACTTCCAGAAT--------------A---TTGTTTTG------GGC--------------AT-------------AA--------------ATTATGAAA---ATTAGATCGTGCAAGCATTGACATAACTGCCC-AAATCA-CGTTGAA-TC--TTTTGAAACTGAAA------TGA--T------CTT--TT-C--TTATGCATACTTCTCTATTTCCAATACA-TTTTG-TACAAGTTT-TATGAGACAATAACAGCTTAAACTGCACAGCAACCGACCAGAGTGAAAATAGCTT---TTATTATGACATTCACTGGTAAACAT-ATAGAATGCCG-CAAGATGAGCATTTCACCtgg
gi|33 : GCAAGTGTTTACAGGACTGCCA-GAATCA-CAGCGATGTC--TTTTGAAACTGAATCTGAAATAT--T------TTT--Tac
gi|18 : --T------TTT--TT-A--TTATTCGAATTTCTCTATTTTTA-TACATTTTCT-TTAATATTT-T-TACGACAATAATAGTTTTAACTGCACAGAAACTGACCAGAGAAAAGTTACCTC---TTATTATGACATTCACCGGCAAACAC-GTAGAATGCTGTTAAGATGGGCGTAACGC
gi|28 : gttacatgatgtacacatattatgagatatactaaatttctactacagcactgttTATTTGTATTTATCTATTTCTCATACATTTTCT-TCAAGTTTT-TATGTGACAATAAAAGTTTTAACTGAACAGCATCTGACTAAAGCGAaactttaaataagttacaaatac
gi|24 : CTCTACTTCTAATACATTTTCT-TTAAGTTTT-TGTGCAGCAATAACAGTTTTAACTGCACAGCAACCGACCAGAGTGAAATTAGCTC---TGGTTATGACATTCACCGGTAAACAC-ATAGAATGCTG-TAAGATGGACATtg
gi|27 : TTTAAACTGCACAGCAACCGACCAGAGCGAAATTAGCTC---TTATTATGACATTCACCGGTAAACAT-ATAGAATGCCG-TAAGATGGGCATTACGCCaatg
6 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|25 ): TTTCAAGCATAATTTTGGATAAAATTAGCCTTATTCTAGATATGCGATTGATTGTAACGCCAAAAGTGTCACAAATATTAAATATATTTGGCATCATGAAACAACCGTTAGTAAACA
Unaligned ( gi|26 ): GATTCGGACAAACCTTTGGACAAAATCAACCTTGTTTGAGAAATGCGGTTGATTTTAACGTCAAAAACATTTATAATTTTTAACGTTTTTTGACGT
Unaligned ( gi|29 ): TTGATAACAATGTCGAAAATGTCACAATTCTTAATTGTGTTTGACAATTCATGATGCAACAGTTGCTTAACAAAAAGCATATTGTTTGCC
Unaligned ( gi|30 ): GATTGATTATAACAAAAAACATGACGCAATAATTAACGGAGTGTGACGTCATGAAGCAGGTAACCAAAATGTGTAACCTTTATCGTT
Unaligned ( gi|31 ): TTAAGTTCAGTCATAATTTTTGATAAAATCGACCTTGTTCGAGAGTATCGATTGATTTTCAATAAAAATATCAAAATTCAA
Unaligned ( gi|34 ): GTGATGTAATATCCATTTTTGACTGTAAAATTAAGCAAAAGAAAAGCAAATTGGTCTTA
Alignments
lowQualScore : 111111111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 7777777777777777777 1111111111 2222222222222222222 222 3333333333 1111 1111111111111 111111111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 0 5555 33 0 4 2222222222222222222 7777 0000000000 66 777 77 2 777 22 2 22 2 22 2 2 8 2 2 4 2 33 1 2222222222222222222 5 2 333 0 4 0 5555555555 4 77 1 8888 6666 555 555 88 0 4 3 4 2 5 5 5 8 2 3 5555555555555 666666666666666666666666666666666666666666666666666666666666666666666666666666666666666 5 2 444 33 555 99 777777 66 444 2 2 888888 88 3 1
lowQualScore : . .... .. . . ................... .... .......... .. ... .. . ... .. . .. . .. . . . . . . . .. . ................... . . ... . . . .......... . .. . .... .... ... ... .. . . . . . . . . . . . ............. ....................................................................................... . . ... .. ... .. ...... .. ... . . ...... .. . .
lowQualScore : 2 0000 22 1 7 8888888888888888888 4444 3333333333 99 888 00 4 444 99 1 99 1 99 4 4 2 1 5 1 5 77 0 7777777777777777777 4 8 222 7 0 3 9999999999 4 00 5 0000 5555 000 444 55 4 5 2 5 8 7 7 7 6 1 8 7777777777777 999999999999999999999999999999999999999999999999999999999999999999999999999999999999999 7 9 000 11 000 44 777777 88 777 5 5 111111 11 1 0
consensus : AAGTGACGTAA----TGCCCA--TTTTT-CACTGTA-----TTT---------AAA----A----------ATTAAGCGAA--AAAA-AAGCATATAGGTCTAAAGGTTGTGGTAAATAATGGC-TAACGACCCATTATTCCCA---ACTCTACCTGCCA--CGAGTTCGAAATAAT-AATCTTCCAAAAT--A-TCATT-TTTCT-TATTTCACTGACCC-AGTGAAA-TAAGAAAAAC--GAAGGTTCCGTTAATTNCCGATATGAACCGAAGA--C-GGT-TTTG-C-CG-ATTTCCGTGAATCACGC-GNACACATNATCACGCGCGTAACAAACGCTGGATACTTACTCGTTTCACGTCG--TTTT----TTC-ATTT---ACA--TACACTCTTTCACGAAGAAGACGGTCACTTNTATNGACTAAAAATACTTACCGATGCCATTTCTGTT-CC-T-TTT-TGCGTAGANTTGTTGACGAAAGNGTTGTTTTG-------------AAAATG-----------T------A------ACT-------------------T--------------TA-----GG--------------CATAAATTATGCAAATTAGATCGTGCAAGCGTTTACGGAACTGCCC-GAATCA-CGGCGAAGTC--TTTTGAAACCGAAACTGAAAT---G-NT------TTTTT--ATTATT---CGTATTTCTCTATTTCTAATACATTTTCTTCAA-GTTTTTATGCGACAATAACAGTTTTAA-CTGCACAGCAACCGACCAGAGCGAAATTAGCTC---TTATTATGACATTCACCGGTAAACACATAGAATGCCG-TAAGATGGGCATAACGCC
Reference ( family-1904 ) : AAGTGGCGTAA----TGCCCA--TTTTT-CACTGTA-----TTT---------AAA----A----------ATTAAGCGAA--AAAA-AAGCATATAGGTCTAAAGGTTGTGGTAAATAATGGC-TAACGACCCATTATTCCCA---ACTCTACCTGCCA--CGAGTTCGAAATAAT-AATCTTCCAAAAT--A-TCATT-TTTCT-TATTTCACTGGCCC-AGTCAAA-TAAGAAAAAC--GAAGGTTCCGTTAATTNCCGATATGAACCGAAGA--C-GGN-TTTG-C-CG-ATTTCCGTGAATCACGC-GNACACATAATCACGCGCGCAACAAACGCTGGATACTTACTCGTTTCACGTCG--TTTT----TTC-ATTT---ACA--TACACTCTTTCACGAAGAAGACGGTCACTTNTATNGACTAAAAATACTTACCGATGCCATTTCTGTT-CC-T-TTT-TGCGTAGAATTGTTGACGAAAGNGTTGTTTTG-------------AAAATG-----------T------A------ACT-------------------T--------------TA-----GG--------------NATAAATTATGCAAATTAGATCGTGCAAGCGTTTACGGAACTGCCC-GAATCA-CGGCGAAGTC--TTTTGAAACCGAAACCGAAAT---G-NT------TTTTT--ATTATT---CGTATTTCTCTATTTCTAATACATTTTCTTCAA-GTTTTTATGCGACAATAACAGTTTTAA-CTGCACAGCAACCGACCAGAGCGAAATTAGCTC---TTATTATGACATTCACCGGTAAACACGTAGAATGCCG-TAAGATGGGCATNACGCC
gi|1 : AAATGGTGTAA----TGCCCA--TTTAT-CACTGTA-----TTTTTTTC----AAA----A----------AATAAGCGGGGGAAAA-AAGCA----AGTCTAAAGGTTATGGTAAATAATGGC-TAACGACCCATTATTCACA---TCTCTACCTGCCA--CGAGTTCGAAAAAAT-AATTTTCCAAAAT--A-TCATT-TTTCT-TATTTCACTAGCTT-AATCAAA-TAAGAATAAC--AAAGGTTCAGTTCGTTTCCGATGTGAACCGAAG---C-GGT-TTTA-AACG-ATTTACGTGAATCACGT-GGACAAATAATTATGTATGCAACAAACACTGGGTAGTCAATCGTTTCACGTTGCTTTTT----TTC-ATTT---ACA--TACACTCTTTCACGAAGCGGACGGTCACTTGTATAAACTAAAAATA-TTACCGATACAATTTATGTT-CC-T-TTCATGCGTAGATTTGTTGACGAAAGTATTGTTTAA-------------AAAAT--------------------------ACT-------------------T--------------TA-----GG--------------AACAAATTATGCAAATTCGATCGCGCAAGCGTTTACGGAACAGCCC-GAATCA-CGGCGAAATC--TTTTGAAACCGAAACTAAAAT---G-CT------TTTTC--ATTACT---CGTATTTCTCTATTTCTAATATAGTTTCCTCAA-AATTGTATGCATCAATAACAGTTTAAA-CTGCACAGCAACCGACCAGAGCGAAATTAGCTC---TTATTATGACATTCACCGGTAAACGCA-AGAATGTCG-TAAGATGGGCATTACGCC
gi|10 : AACAATCCACTATTTGTA---GCTCTTCCTGCCA--TGAGTTAGAAATAAT-AATCTTCCAAAAT--A-TTTTT-GTTCT-TATTT----GACCT-AGTGAAA-TA-GAAAAAC--A-------CATTAATTACCAATATGAACCAAAGA--T-GGT-----------ATTTAC-TGATTTCCGT-G-------AATTATGT-------------TGGATA--TA-TCATTTCATGTCG--TTTT----T-C-ATTT---ACA--CACACACTTTCACAAAGAAGAC----------------TAAAAATACTTAGCGATGCCATTTCTGTT-TCAT-TTT-TGCATAGAATTGTTGACGAAAAAACTGTTTTG-------------AAAATC-----------T------A------ACT-------------------T--------------TAATTTGGG--------------TATAAATTATACACATTTGATCATGCAAGCATTTATGGAACTGCCCCAAATCA-CGACGAGGGC--TTTTGAAACCTTAACCGAAAT---G-AT------GTTTT--ATCATT-----------TCTATTTCTAATACATTTTCTATAA-GTCTTTATGAGACAATAATAGGTTTAA-CTTCACTATAACCAACCAGAGCAAAATTA--TC-----------AAATTCACCGGTAAAC-CATAGAA-GCTG-TAAGATGAGCATA
gi|11 : cAA----A----------ATTAAGC-AA--AATG-AAGTATACAGGTCTAAAGGTTGTGGTAA----TGGC-TAACAACCTATTATTGCCA---ACTCCACATGCCC--TGAGTTTGAAATAAT-AATTTTCCAAAAT--A-TTATT-TTTC--TACTTATCTGACCC-AGTGAAA-TAAGAAGATT--GAAGGTTCCGTTAATTACCGATATGAATCGTAGA--T-GGG-TTTA-C-CA-ATTTCTGTGCATGTCGC--TACACATTATCACA-GTGTAAC--ACGATGGAAACATACTCATTTCACATCG---TTT----TTC-ATTT---ACA--TACACTCTTTCACGAAGAAGACTG--ACTTTTATTAACTTAATATACTAACAGATGTCATTTCTGTT-CT-T-TTT-TGTGTAAAATTTTTGAAGAAAGAGTTGTTTTG-------------AAAATGTATCTTCAACTT------A------ACT-------------------T--------------TA-----GG--------------CTTAAATTTTGCAAATTAGACCATGCAAGTGt
gi|12 : tACACATTATCACG-GCGTAA--AACGCTGGGTACTTACTCGTCACACATGG--TTTT----T-C-ATTT---ACA--TAC--TCTTTCACGAAGCAGACGGTCACCTGTATTGACTAAAAATACTTACCGATGCCATTTCTGTT-CT-TGTTT-TGCGTTGATTTGATGATGGAAGTGTTGTTTTC-------------AAATTG-----------TATCTTCA------ACT-------------------TCCGGAATATCGCTATA-----GG--------------AATAACTTATGCAAAGTAGATCGT----GCGTTTACGGAACTGCCC-GAATAA-CGGCGAAGTC--TTTTCAAACCGAAACTAAAAT---G--T------TTCTT--ATTATTACCCGTATTTCTCTATTTCTTATATATTTTCTTCAA-TTTT
gi|13 : gctAATGACGTTA----GGCTCA--CTTTT-CATTGTA-------------------A----A----------TTTAAGCGTT--AAAA---GCATATAGGTAAAAAGGTTGTGG-AAATAA-AACATAACTACCCGTTATTCCCA---ACTCTATATGCAA--CGAAGTTGAACTAAT-AATCTTCCAAAAT--A-ACATT-T---T-CATTTGACTGAATC-AGTGAAA-TCAGAAAAAT--GAATGTTCTGTTAATTACCGATATGAACTGAAAATTC--TT-TTTG-T-CG-A-TTCCGTGAATCACGC--TACACATTAAAATG-GCGTAAT--ACTCTTTATATTCACTCATTTAACATCG--GTTT----TT--ATTTGTAATA--AATATTCTTTAACGAAGAAGACGGTTA
gi|14 : TGTT-CC-T-TTT-TGCATAGATTTGATGACAAAAG--TTGTTTTG-------------AAAATG-----------T------ATCTTCAACT-------------------TCCAGAATATTGTTTTG-----GG--------------CATAAATTATGAAAATTAGATCGTGCAAGCATTGACATAACTGCCC-AAATCA-CGTTGAA-TC--TTTTGAAACTGAAA------T---G-AT------CTTTT--CTTATG---CATACTTCTCTATTTCCAATACATTTTGTACAA-GTTTT-ATGAGACAATAACAGCTTAAA-CTGCACAGCAACCGACCAGAGTGAAAATAGCTT---TTATTATGACATTCACTGGTAAACATATAGAATGCCG-CAAGATGAGCATTTCACCaa
gi|15 : ATTGACTAAAA-TATTTACCGATGCCAGTTCTGTT-A----TTT-TGCATAGAATAATTGATGAAAGAGATGTTTTG-------------AAAATG-----------T------ATATCA-ACT-------------------TCCGGTACAATGCGTTG-----GG--------------CATAGATTTTGCAACTAATATCGTGCATGCGTTTACGAACCTGCTA-GAATCA-CAGCATCGTC--TTTTGAAACTGAAACT-AAATTAAG-GT------TT--------------CGTATTTCTCTATTCCTTATACATTGCCGTCAC-GTTTTTATGCGACAATTACAGTTTTAA-CTGCACAGCAACCGACAAAAGCGAAAGTAGCTC---TTATTATTACATTCATCac
gi|16 : AAATGGCGTAACTTTTGCC-A--TT----CACAATA-----TTT---------AAA----ATAACGATAAAATTAAGCGAA--ATAG---GCATATAGGTCTAAAGGATGTGGTACATAACGGC-TAACGACCCATTATTTCAT---ACTCTACCTGTCA--CGAGTTCGAACAAAT-AATCTTCC----T--T-TTATT-TTATT---TTTTAATGACCCTAG--AAA-TTAAAAAAAtgg
gi|17 : gggcatacttttgtatacataaaccttttttgattggtcgtaacgtcaaaaatgttacagttattaacggtttttgacgtcatgaagcaacggttcccaaatTGGTGTTA----TGCCCA--TATTT-CACTGTAAA---TTT---------GCAGCTGA----------ATTGAGCGGA--AAAGGAAGCATATAGGTCTAAAGGCTGTGGTAACTAATGGC-AAAATA-TCATTTTTCTT---------------------AGT---AAATATTCAATC------AATCAA-TCA----ATCT-TAGTTAACTGCCCC-TGTC--------AAAAAT--GAAGGTTCTGTTAATTGCCGATATTAATCAAAGT--C-Gtc
gi|18 : tT------TTTTT--ATTATT---CGAATTTCTCTATTTTTA-TACATTTTCTTTAATATTTTTA--CGACAATAATAGTTTTAA-CTGCACAGAAACTGACCAGAGAAAAGTTACCTC---TTATTATGACATTCACCGGCAAACACGTAGAATGCTGTTAAGATGGGCGTAACGCaccatgggaacatcgttaggccatttccgtctatgtatggaatgataaccttaaaatacccatcttatatc
gi|19 : gttacatgatgtacacatattatgagatatactaaatttctactacagcactgttATATAGGTCTAAAGGATGTGACAAATAATGGC-TAATGACCCATTATTCCCA---ATTGTACTTGCCA--CGAGTTCGAAATAAT-AATCTTCCGAAAT--A-TCATA-TTTCT-TATTTCACTAGCCT-AGTCAAA-TAAAAAGAAC--GAATGTTCCGTTAATTTGCGATACGA----------------TTTG-C-CG-ATTTATGTGAATCACGT-GGATAATTAATTACGCATGCAACAAAaactttaaataagttacaaatac
gi|2 : tAGTGACGTTA----TAACCAACTTTTT-CACTATA-------------------A----A----------ATGAAGCGAATAAAAA-AAGCATACATGCCTAAA--TT----------ATGGT-TAACGACCCATTTTTTCTA---ACTCTACCTGTCA--CAAGTTCAAAATAAC-AATCTTCCAAAAT--ATTTTTT-TTTCT-TATTTGGCTGACAC-AGCGGAA-TAAGAAAAAC--GAAGGTTCCGTTAATTACCGATATGAACCGAAGA--G-AGT-TTTGAC-CG-ATTTCCGTGAATCACGC--TACACATTATCACG-GTGTATT--ACACTGAA----TACTCATTTCACATCG---TTA----TTG-ATTT---ACA--TAGACTCTTTCACGAAGAAGGTGGTCA-----A-AAAATAAAAATACTTACTGATGCCATTTCTGTT-CA-TATTG-TGCGCAGAATTGCTGACAAAAGTGTTGTTTTG-------------AAAATG-----------TACCTTCA------ACT-------------------T--------------CA-----GGAAAATTGCTTTTGACATAAATTATGCAAATGAGATCGTGCAGGCGAT--CG----T--------TCA-CGATGACGTA--TTTTGAGTCTGAAACTGATAC---G-GTATTATGTTTTT--ATTATT---CGTGTTTCTCTATTTCTAATACATTTTCTTCAA-GTTTGTATGCGACAATAATAATTTTAA-CTGTACAGCAACCAACCAGAGCGAAATTAGCTC---TTATTATGACATTCACCGGTTAACACGGACACTGCTG-TAAGATGGGTATAACGTCt
gi|20 : AAGTGGTGTAA----TGCCCA--TCTTT-CACTGTG-------------------A----A----------ACTGGGCGAA--AAAA-AAGCATAGAGGTCTAAAGGTTGTGATAAATAATGGC-TAACGACCCATTAATACCA---ACTGTACCTGCCA--CGAGTTCGAAATAAT-AATCTTTCAAAAT--A-TCATTGTTTCT-TATTTCACTGCCCT-AGTCAAA-CAAGAAAAAC--GAAGGTTCCGTTAATTTCCGATAT
gi|21 : AAATGGTGTAA----TGCCCA--TAAAT-CACTGTA-----TTTTTTAT----AAA----A----------ATTAAGCGAA--AAAA-AACCATATAGATCTAAAGGTTGTGGTAAATAATGGC-TAACGACCTATTATTCCCA---TCTCTACCTGCCA--CGAGTTCGATATAAT-AAGCTTCCAAAA---A-T-ATT-TATCTCTATT
gi|22 : aTGACGTTA----TGCCCA--TTTTC-C-CTGTA-------------------A----A----------ATTAAGCTAA--AACA-AAGCATACAGGTCTTAAGGTTGT---AAAAAATGGC-TAAAGACCTATTAATATTAGTTACTCTACCTGCCA--CGAGTTCGAAATAAT-AATCTTCCAAAAT--A-T
gi|23 : TGACGTTA----TGCCCA--TTTTC-C-CTGTA-------------------A----A----------ATTAAGCTAA--AACA-AAGCATACAGGTCTTAAGGTTGT---AAAAAATGGC-TAAAGACCTATTAATATTAGTTACTCTACCTGCCA--CGAGTTCGAAATAAT-AATCTTCCAAAAT--A-Tttgccgatttgttaacatgtttga
gi|24 : CTCTACTTCTAATACATTTTCTTTAA-GTTTTTGTGCAGCAATAACAGTTTTAA-CTGCACAGCAACCGACCAGAGTGAAATTAGCTC---TGGTTATGACATTCACCGGTAAACACATAGAATGCTG-TAAGATGGACATAATGttgccgatttgttaacatgtttg
gi|27 : TTTTAAACTGCACAGCAACCGACCAGAGCGAAATTAGCTC---TTATTATGACATTCACCGGTAAACATATAGAATGCCG-TAAGATGGGCATTACGCC
gi|28 : TATT---TGTATTTATCTATTTCTCATACATTTTCTTCAA-GTTTTTATGTGACAATAAAAGTTTTAA-CTGAACAGCATCTGACTAAAGCGA
gi|3 : AAGTGGTGTAA----TGCCCA--TTTAT-CACTGTA-----TTTTTTTTTATAAAA----A----------AATAAGTGAA--AAAA-A-GTATATAGGTCTAAAAATTGTGGTAAATAATGGC-TAACGACCCATTATTCCCA---TTTCTACCTGTCA--CGAGTTCGAAATAAT-AATCTTCCAAAAT--A-TCATT-TTTCT-TATTCCACTAGCCT-AGTCAAA-TAAGAAAAAC--GACGGTTCCGTTCATTTCAGATGTGACCCGAAGC--G-GGT-TTTG-C-CG-ATTTCCGTGAATCACAC-GGGCAAATAATTATGCAGGTAACAAACACTGTGTATTTACTCGTTTCACGTTT--TTTT----TTCCATTT---ACA--TACACTCTTTCACGAAGCAGACGGCCACTTATATAAACTAAAAATACT-ACCGATATAATTTCTGAT-CC-T-TTTATGCGTAGATTTGTTGACGAAAGTATTGTTCAG-------------AAAATG--------------------------CT-------------------T--------------TA-----GG--------------AATAAATTATGCAAATTAGATCATGC---------------------GAATAA-CGGCGAAGTC--TTTTGAAACCGAAACTAAAAT---G-CT------TTTTTTTATTACT---CGTATTTCTCTATTTCTAATATATTTTCTTCAA-AAGTGTATGCATCAATAACAGTTTAAA-CTGCACAGCAACGGACCAGAGCGAAATTAGCTC------TTATGACATTCACCACTAAACACA-AGACTGCCG-TAAGATGGGCATTACGCCtg
gi|32 : tgAGTGACGTTA----TGTCCA--TTTTT-CACTGT-------------------AA----A----------ATTAAGTG-T--TAAA-AAGCATATCTGTCTAAAGGTTGTG
gi|33 : GCAAGTGTTTACAGGACTGCCA-GAATCA-CAGCGATGTC--TTTTGAAACTGAATCTGAAAT---A-TT------TTTT
gi|34 : GTGATGTAA----TATCCA--TTTTT-GACTGTA-------------------A----A----------ATTAAGCAAA--AGAA-AAGCAAATTGGTCT
gi|35 : AGGTGGTGTAA----TGCCCA--TTTAT-CACTGTA-----ta
gi|4 : taAAGTGATGTAA----TGCCCA--TTTAC-TACTGTAATTTTTTT---------AAA----A----------ATTAAGTGAA--AAAA-A-GCATATTGGTCTAAAGGTTGTGGTAAATAATTGC-AAATGATCCATTATTCCCA---ACTCTAGCTGCAA--CGAATTCGAAATAAT-AATCTTCCAAAGT--A-TCATT-TTTCT-TATTCCACTAGTCT-AGTCAAAATAAGAAAAAAAAGAAGGTTCCATTCATTTCCGATGTGAACAGAAG---C-GGTGTTTG-C-TG-ATTTCCATGAATAACGTTGGA-ACATAATTATGCAAAGAACAAACACTGGGTATTCAATCGTTTCACGGTG--TTTTATTTTTC-ATTT---ACA--TACACTCTTTCACGTAGTAGACGGTCACTTGTATAGACTAAAAATACT-GTCAATGACATATCTGTT-CC-T-TT---ACGTAGATTTGTTGACAAAAGTGTTGTTTTG-------------AAAAT--------------------------ACT-------------------T--------------TA-----GG--------------AATAAATTATGAAAATTAGATCGTGCAAGCGTTTACGGAACTGCTC-GAATCA-CGGCAAAGTC--CTTTGAAATCGAAACTAAAAT---G-CT------TTTTTT-ATTACT---CGTATTTGTCTATTTCTAATATATTTTCTTCAA-CTTTTTATGCAGCAATAACAATTTAAA-CTGCACAGCAGCCGACCAGAGCGAAATCAGCTT---TTATTATGACATTCACCAGTAAACACA-AGAA
gi|5 : AAGTGACGTAA----TGCCCA--TTTTTTCACTATA-------------------A----A----------ATTAAGCGGG--AAAA-G-GCGTATAGTTCTAAAGGTTATG-----------C-TAGCAACCCATTATTCCCA---ACTCCACCTGCTA--CGAGTTCGAAATAAT-AATCTTCTAAAAT--A-T--TT-TTTTT-TGT----CTGACCC-AGTGAAA-TAAGAAAAAC--GATGGTTCCGTTAACTGCCGATATGAATTGAAGA--C-GGG-TTT----TGTATTT-----AATCACGC--CACACATTATCATG-GCGTAAT--GCACTGGATACTTACTCGTTTCTCATCA---TTT----TTC-ATTT---ACATTTACACTCTTTCACGATGAAGACGGTCACCTTTATTGACT-CAAATGCTCAATTATGCCATTTCTGTTCCC-T-TTT-TGCGTAGAATTGTTGACATAAGAGTTGTTTTG-------------ACAATG-----------TACCTTCA------ACTTCTGGAACATTGC------T--------------TG-----AG--------------CATAAATTGCGGAAGCTAGATCGTGCAAGCGTTTACAGAACTGACC-GAGTCA-CGACGTACT---TTTTGAAACCGATCCCGAAAC---G--T------TTTTT--AATATT---CGTATTTCTCTGTTCCTAATACATTTTTCTCAA-GTTTTTATGCGACAATAACAGTTTTAA-CTGCACAGGTACCGACCAGCGCGAAATTAGCTC---T---------------CGGTAAACACGTAGAATGTTG-AAAGATGGGCAGAACGTC
gi|6 : taAGTGACGTAA----TGCCCA--TTTTTTCACTATA-------------------A----A----------ATTAAGCGGG--AAAA-G-GCGTATAGTTCTAAAGGTTATG-----------C-TAGCAACCCATTATTCCCA---ACTCCACCTGCTA--CGAGTTCGAAATAAT-AATTTTCCAAAAT--A-TT-TT-TTTTT-TGT----CTGACCC-AGCGAAA-TAAGAAAAAC--GATGGTTCTGTTAACTGCCGATATGAATTGAAGA--C-GGG-TTT----TGTATTT-----AATCACGC--CACACATTATCATG-GCGTAAT--GCACTGGATACTTACTCGTTTCTCATCA---TTT----TTC-ATTT---ACATTTACACTCTTTCACGATGAAGACGGTCACTTTTATTGACT-CAAATGCTCAATTATGCCATTTCTGTTCCC-T-TTT-TGCGTAGAATTGTTGACATAAGAGTTGTTTTG-------------ACAATG-----------T------A------ACTTCAACTTCTGGAACATTGCT--------------TG-----AG--------------TATAAATTGTGGAAGCTAGATCGTGCAAGCGTTTACGGAACTGACC-GAGTCA-CGACGTACT---TTTTGAAACCGATCCCGAAAC---G-TT------TTTTT--ATTATT---CGTATTTCTCTGTTTCTAATACATTTTTCTCAA-GTTTTTATGCGACAATAACAGTTTTAA-CTGCACAGGTACCGACCAGCGCGAAATTAGCTC---T---------------CGGTAAACACGTAGAATGTTG-TAAGATGGACAGAACG
gi|7 : AGGTCTTAAGTTTGTGTTAAATAATGGC-TAACGACCCATCATTTTCA---ACTAAACCGGTTATTCGAGTTCGAAATAAT-AATCTTCCAAAAT--A--CTTT-TTT-----TTTGACTGACCC-AGTGAAT-TAAGAAAAAC--GAAGGTTCCGTTA-TTGCCGATATGAACCGAAGA--C-G-------------ATTTCCGTGAATCACGC--TGTACATTGTCACG-GCATAACA--CGCTGTATACATACTCATTTCATATC------------------------A--TACACTCTTTCATGATGAAGACGGTCACTTTTATTGACTTAAA-TACTTACCGATTTCAATTCTGTT-CT-T-TTT-TGTGTAGAAATGCTGAAGAAAGAGTTGTTTTGTTTTTCAACTTTCGAAACA-----------T------T------GCT-------------------T--------------TG-----GT--------------CATAAATTATGCAAATTAGGTCGCGTTAGCGTTTACGGAACTGCCC-GAACCAACGCCTAAGTTATTTTTGAAACCGAAACTGTAAT---G-AT------TTTTT--ATTACT---CGTATTTCTCTATTTCTAATATATTTTCTTCAA-GTTGTTATACGACAATAATAGTTTTAA-ATACACAGCAATCAACTAGAGCGAAATTAGCTCCTATTGTTATGACTTTCGCCGGCAAACAAATAAAATGCTG-TAAGATGGGCATAGCt
gi|8 : ctaattttcagtgtaaaattaATTCCCA---TCTCTACCTGC----------------AAT-AATCTTCCAAAGT--A-TCATT-TTTCT-TATTTCACTAGTCT-AGACAAA-TAAG-AAAAC--GAAGGTTTCGTTCATTTCCGATGTGAACCGAA-A--CAGAT-TTTG-C-TG-ATTTCCGTGAATCACGT-GGGCAAATAATTATGCATGCAACAAACACTGGGTATTCACTCGTTTTACGTT---TTTT----TTC-ATTT---ACA--TACACTCTTACACGAAGCAGACGATCATTTGTATAGACTTAAAATAC-TACCGATACAATGTGTGTT-CC-T-TTTATTCGTAGATTTGTTGACGAAAATTTTGTTTAG-------------AAAATG--------------------------CT-------------------T--------------TA-----GG--------------AATAAGTTATGCAAATTAGATCGTGCAAGCGCTTACGAAACAGCTC-GTATCA-CGACGAAGTC--TTTTGAAACCGAAACTAAAAT---GCTT------TTTTT--ATTACT---CGTATTTCTCTATTTCTAATATATTTTCTTCAA-AATTGTATGCATCAACAACAGTTTAAA-CTGCACAGCAACGGATCAGAGCGAAATTAGCTC---TTGTTATGACATTCACCGGTAAACGCA-AGAATGCCG-TTAGATGGACatc
gi|9 : AAGTGATGTAA----TACCCA--TTTTT-GACTGTA-----------------AAAT---A----------ATTA
gi|9 : taAAATAAT----TA-CAATCCACTATTTGTA---ACTCTTCCTGCCA--TGAGTTAGAAATAAT-AATCTTCCAAAAT--A-TTTTT-GTTCT-TATTT----GACCT-AGTGAAA-TAA-AAAAAC--A-------CATTAATTACCAATATGAACCAAAGA--T-GGT-----------ATTTAC-TGATTTCCGT-G-------AATTATGC-------------TGGATA--TA-TCATTTCATGTCC--TTTT----TT--ATTT---ACA--CACACT--TTCACAAAGAAGAC----------------TAAAAATACTTAGCGATGCCATTTCTGTT-TCAT-TTT-TGCATAGAATTGTTGACAAAAGAACTATTTTG-------------AAAATC-----------T------A------ACT-------------------T--------------TAATATGGG--------------TATAAATTATACAAATTTGATCATGCAAGCGTTTATGGAACTGCCCCAAATCA-CGGAGAGGGC--TTTTGAAACCGTAACCGAAAA---G-AT------GTTTT--ATTATT---T-------TCTATTTCTAATACATTTTCTATAA-GTCTTTATGCGACAATAATAGGTTTAA-CTTCACTATAACCAACCAGAGCAAA-------------ATTATAAAATTCACCGGTAAACACATAGAA-GCTG-TAAGATGAGCATcaatccactatttgtaactcttcctgccatgagttagaaataataatcttccaaaatatttttgttcttatttgacctagtgaaataaaaaaacacattaattaccaatatgaaccaaagatggtatttactgatttccgtgaattatgctggatatatcatttcatgtccttttttatttacacacactttcacaaagaagactaaaaatacttagcgatgccatttctgtttcatttttgcatagaattgttgacaaaagaactattttgaaaatctaactttaatatgggtataaattatacaaatttgatcatgcaagcgtttatggaactgccccaaatcacggagagggcttttgaaaccgtaaccgaaaagatgttttattattttctatttctaatacattttctataagtctttatgcgacaataataggtttaacttcactataaccaaccagagcaaaattataaaattcaccggtaaacacatagaagctgtaagatgagcata
5 sequences could not be aligned to this reference sequence:
Unaligned ( gi|25 ): TTTCAAGCATAATTTTGGATAAAATTAGCCTTATTCTAGATATGCGATTGATTGTAACGCCAAAAGTGTCACAAATATTAAATATATTTGGCATCATGAAACAACCGTTAGTAAACA
Unaligned ( gi|26 ): GATTCGGACAAACCTTTGGACAAAATCAACCTTGTTTGAGAAATGCGGTTGATTTTAACGTCAAAAACATTTATAATTTTTAACGTTTTTTGACGT
Unaligned ( gi|29 ): TTGATAACAATGTCGAAAATGTCACAATTCTTAATTGTGTTTGACAATTCATGATGCAACAGTTGCTTAACAAAAAGCATATTGTTTGCC
Unaligned ( gi|30 ): GATTGATTATAACAAAAAACATGACGCAATAATTAACGGAGTGTGACGTCATGAAGCAGGTAACCAAAATGTGTAACCTTTATCGTT
Unaligned ( gi|31 ): TTAAGTTCAGTCATAATTTTTGATAAAATCGACCTTGTTCGAGAGTATCGATTGATTTTCAATAAAAATATCAAAATTCAA
Alignments
lowQualScore : 111111111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 7777777777777777777 1111111111 111111111 111 2222222222 1111 1111111111111 111111111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 0 5555 33 0 4 2222222222222222222 7777 0000000000 66 777 77 2 777 22 2 22 2 22 2 2 8 66 33 1 555555555 8888 55 777 3 0 1 4 1 9999999999 0 77 1 8888 6666 555 555 88 0 4 3 4 2 5 5 5 8 1 3 5555555555555 888888888888888888888888888888888888888888888888888888888888888888888888888888888888888 5 2 444 555 99 777777 66 444 2 2 888888 6 3
lowQualScore : . .... .. . . ................... .... .......... .. ... .. . ... .. . .. . .. . . . .. .. . ......... .... .. ... . . . . . .......... . .. . .... .... ... ... .. . . . . . . . . . . . ............. ....................................................................................... . . ... ... .. ...... .. ... . . ...... . .
lowQualScore : 2 0000 22 1 7 8888888888888888888 4444 3333333333 99 888 00 4 444 99 1 99 1 99 4 4 2 99 77 0 999999999 2222 55 222 0 7 0 6 6 6666666666 5 00 5 0000 5555 000 444 55 4 5 2 5 8 7 7 7 6 0 8 7777777777777 222222222222222222222222222222222222222222222222222222222222222222222222222222222222222 7 9 000 000 44 777777 88 777 5 5 111111 7 1
consensus : AAGTGACGTAA----TGCCCA--TTTTT-CACTGTA-----TTT---------AAA----A----------ATTAAGCGAA--AAAA-AAGCATATAGGTCTAAAGGTTGTGGTAAATAATGGC-TAACGACCCATTATTCCCA---ACTCTACCTGCCA--CGAGTTCGAAATAAT-AATCTTCCAAAAT--A-TCATT-TTTCT-TATTTCACTGACCCAGT-GAAATAAGAAAAAC--GAAGGTTCCGTTAATTNCCGATATGAACCGAAGA--C-GGT-TTTG-C-CGATTTCCGTGAATCACGC-GNACACATTATCACG-GCGTAACAAACGCTGGATACTTACTCGTTTCACGTCG--TTTT----TTC-ATTT---ACA--TACACTCTTTCACGAAGAAGACGGTCACTTNTATNGACTAAAAATACTTACCGATGCCATTTCTGTT-CC-T-TTT-TGCGTAGANTTGTTGACGAAAGNGTTGTTTTG-------------AAAATG-----------T------A------ACT-------------------T--------------TA-----GG--------------CATAAATTATGCAAATTAGATCGTGCAAGCGTTTACGGAACTGCCC-GAATCA-CGGCGAAGTC--TTTTGAAACCGAAACTGAAAT---G-NT------TTTTT--ATTATT---CGTATTTCTCTATTTCTAATACATTTTCTTCAA-GTTTTTATGCGACAATAACAGTTTTAA-CTGCACAGCAACCGACCAGAGCGAAATTAGCTC---TTATTATGACATTCACCGGTAAACACATAGAATGCCG-TAAGATGGGCATAACGCC
Reference ( family-1904 ) : AAGTGACGTAA----TGCCCA--TTTTT-CACTGTA-----TTT---------AAA----A----------ATTAAGCGAA--AAAA-AAGCATATAGGTCTAAAGGTTGTGGTAAATAATGGC-TAACGACCCATTATTCCCA---ACTCTACCTGCCA--CGAGTTCGAAATAAT-AATCTTCCAAAAT--A-TCATT-TTTCT-TATTTCACTGACCCAGT-GAAATAAGAAAAAC--GAAGGTTCCGTTAATTNCCGATATGAACCGAAGA--C-GGT-TTTG-C-CGATTTCCGTGAATCACGC-GNACACATNATCACGCGCGTAACAAACGCTGGATACTTACTCGTTTCACGTCG--TTTT----TTC-ATTT---ACA--TACACTCTTTCACGAAGAAGACGGTCACTTNTATNGACTAAAAATACTTACCGATGCCATTTCTGTT-CC-T-TTT-TGCGTAGANTTGTTGACGAAAGNGTTGTTTTG-------------AAAATG-----------T------A------ACT-------------------T--------------TA-----GG--------------CATAAATTATGCAAATTAGATCGTGCAAGCGTTTACGGAACTGCCC-GAATCA-CGGCGAAGTC--TTTTGAAACCGAAACTGAAAT---G-NT------TTTTT--ATTATT---CGTATTTCTCTATTTCTAATACATTTTCTTCAA-GTTTTTATGCGACAATAACAGTTTTAA-CTGCACAGCAACCGACCAGAGCGAAATTAGCTC---TTATTATGACATTCACCGGTAAACACATAGAATGCCG-TAAGATGGGCATAACGCC
gi|1 : AAATGGTGTAA----TGCCCA--TTTAT-CACTGTA-----TTTTTTTC----AAA----A----------AATAAGCGGGGGAAAA-AAGCA----AGTCTAAAGGTTATGGTAAATAATGGC-TAACGACCCATTATTCACA---TCTCTACCTGCCA--CGAGTTCGAAAAAAT-AATTTTCCAAAAT--A-TCATT-TTTCT-TATTTCACTAGCTTAAT-CAAATAAGAATAAC--AAAGGTTCAGTTCGTTTCCGATGTGAACCGAAG---C-GGT-TTTA-AACGATTTACGTGAATCACGT-GGACAAATAATTATGTATGCAACAAACACTGGGTAGTCAATCGTTTCACGTTGCTTTTT----TTC-ATTT---ACA--TACACTCTTTCACGAAGCGGACGGTCACTTGTATAAACTAAAAATA-TTACCGATACAATTTATGTT-CC-T-TTCATGCGTAGATTTGTTGACGAAAGTATTGTTTAA-------------AAAAT--------------------------ACT-------------------T--------------TA-----GG--------------AACAAATTATGCAAATTCGATCGCGCAAGCGTTTACGGAACAGCCC-GAATCA-CGGCGAAATC--TTTTGAAACCGAAACTAAAAT---G-CT------TTTTC--ATTACT---CGTATTTCTCTATTTCTAATATAGTTTCCTCAA-AATTGTATGCATCAATAACAGTTTAAA-CTGCACAGCAACCGACCAGAGCGAAATTAGCTC---TTATTATGACATTCACCGGTAAACGCA-AGAATGTCG-TAAGATGGGCATTACGCC
gi|10 : AACAATCCACTATTTGTA---GCTCTTCCTGCCA--TGAGTTAGAAATAAT-AATCTTCCAAAAT--A-TTTTT-GTTCT-TATTT----GACCTAGT-GAAATA-GAAAAAC--A-------CATTAATTACCAATATGAACCAAAGA--T-GGTATTTA-C-TGATTTC---------CGT-GAA----TTAT----------------GTTGGATA--TA-TCATTTCATGTCG--TTTT----T-C-ATTT---ACA--CACACACTTTCACAAAGAAGAC----------------TAAAAATACTTAGCGATGCCATTTCTGTT-TCAT-TTT-TGCATAGAATTGTTGACGAAAAAACTGTTTTG-------------AAAATC-----------T------A------ACT-------------------T--------------TAATTTGGG--------------TATAAATTATACACATTTGATCATGCAAGCATTTATGGAACTGCCCCAAATCA-CGACGAGGGC--TTTTGAAACCTTAACCGAAAT---G-AT------GTTTT--ATCATT-----------TCTATTTCTAATACATTTTCTATAA-GTCTTTATGAGACAATAATAGGTTTAA-CTTCACTATAACCAACCAGAGCAAAATTA--TC-----------AAATTCACCGGTAAAC-CATAGAA-GCTG-TAAGATGAGCATAA
gi|11 : cAA----A----------ATTAAGC-AA--AATG-AAGTATACAGGTCTAAAGGTTGTGGTAA----TGGC-TAACAACCTATTATTGCCA---ACTCCACATGCCC--TGAGTTTGAAATAAT-AATTTTCCAAAAT--A-TTATT-TTTCT--ACTTATCTGACCCAGT-GAAATAAGAAGATT--GAAGGTTCCGTTAATTACCGATATGAATCGTAGA--T-GGG-TTTA-C-CAATTTCTGTGCATGTCGC--TACACATTATCACA-GTGTAAC--ACGATGGAAACATACTCATTTCACATCG---TTT----TTC-ATTT---ACA--TACACTCTTTCACGAAGAAGACTG--ACTTTTATTAACTTAATATACTAACAGATGTCATTTCTGTT-CT-T-TTT-TGTGTAAAATTTTTGAAGAAAGAGTTGTTTTG-------------AAAATGTATCTTCAACTT------A------ACT-------------------T--------------TA-----GG--------------CTTAAATTTTGCAAATTAGACCATGCAAGTGt
gi|12 : tACACATTATCACG-GCGTAA--AACGCTGGGTACTTACTCGTCACACATGG--TTTT----T-C-ATTT---ACA--TAC--TCTTTCACGAAGCAGACGGTCACCTGTATTGACTAAAAATACTTACCGATGCCATTTCTGTT-CT-TGTTT-TGCGTTGATTTGATGATGGAAGTGTTGTTTTC-------------AAATTG-----------TATCTTCA------ACT-------------------TCCGGAATATCGCTATA-----GG--------------AATAACTTATGCAAAGTAGATCGT----GCGTTTACGGAACTGCCC-GAATAA-CGGCGAAGTC--TTTTCAAACCGAAACTAAAAT---G--T------TTCTT--ATTATTACCCGTATTTCTCTATTTCTTATATATTTTCTTCAA-TTTT
gi|13 : gctAATGACGTTA----GGCTCA--CTTTT-CATTGTA-------------------A----A----------TTTAAGCGTT--AAAA---GCATATAGGTAAAAAGGTTGTGG-AAATAA-AACATAACTACCCGTTATTCCCA---ACTCTATATGCAA--CGAAGTTGAACTAAT-AATCTTCCAAAAT--A-ACATT-TTC----ATTTGACTGAATCAGT-GAAATCAGAAAAAT--GAATGTTCTGTTAATTACCGATATGAACTGAAAATTC-T-T-TTTG-T-CGATT-CCGTGAATCACGC--TACACATTAAAATG-GCGTAAT--ACTCTTTATATTCACTCATTTAACATCG--GTTT----TT--ATTTGTAATA--AATATTCTTTAACGAAGAAGACGGTTA
gi|14 : TGTT-CC-T-TTT-TGCATAGATTTGATGACAAAAG--TTGTTTTG-------------AAAATG-----------T------ATCTTCAACT-------------------TCCAGAATATTGTTTTG-----GG--------------CATAAATTATGAAAATTAGATCGTGCAAGCATTGACATAACTGCCC-AAATCA-CGTTGAA-TC--TTTTGAAAC------TGAAAT---G-AT------CTTTT--CTTATG---CATACTTCTCTATTTCCAATACATTTTGTACAA-GTTTT-ATGAGACAATAACAGCTTAAA-CTGCACAGCAACCGACCAGAGTGAAAATAGCTT---TTATTATGACATTCACTGGTAAACATATAGAATGCCG-CAAGATGAGCATaa
gi|15 : ATTGACTAAAA-TATTTACCGATGCCAGTTCTGTT-A----TTT-TGCATAGAATAATTGATGAAAGAGATGTTTTG-------------AAAATG-----------T------ATATCA-ACT-------------------TCCGGTACAATGCGTTG-----GG--------------CATAGATTTTGCAACTAATATCGTGCATGCGTTTACGAACCTGCTA-GAATCA-CAGCATCGTC--TTTTGAAACTGAAACT-AAATTAAG-GT------TT--------------CGTATTTCTCTATTCCTTATACATTGCCGTCAC-GTTTTTATGCGACAATTACAGTTTTAA-CTGCACAGCAACCGACAAAAGCGAAAGTAGCTC---TTATTATTACATTCATCttcaccac
gi|16 : AAATGGCGTAACTTTTGCC-A--TT----CACAATA-----TTT---------AAA----ATAACGATAAAATTAAGCGAA--ATAG---GCATATAGGTCTAAAGGATGTGGTACATAACGGC-TAACGACCCATTATTTCAT---ACTCTACCTGTCA--CGAGTTCGAACAAAT-AATCTTCC----T--T-TTATT-TTATT---TTTTAATGACCC--TAGAAATTAAAAAAAtgg
gi|17 : gggcatacttttgtatacataaaccttttttgattggtcgtaacgtcaaaaatgttacagttattaacggtttttgacgtcatgaagcaacggttcccaaatTGGTGTTA----TGCCCA--TATTT-CACTGTAAA---TTT---------GCAGCTGA----------ATTGAGCGGA--AAAGGAAGCATATAGGTCTAAAGGCTGTGGTAACTAATGGC-AAAATA-TCATTTTTCTT---------------------AGT---AAATATTCAATC------AATCAA-TCA----ATCT-TAGTTAACTGCCCCTGT--------CAAAAAT--GAAGGTTCTGTTAATTGCCGATATTAATCAAAGT--C-Gtc
gi|18 : tT------TTTTT--ATTATT---CGAATTTCTCTATTTTTA-TACATTTTCTTTAATATTTTTA--CGACAATAATAGTTTTAA-CTGCACAGAAACTGACCAGAGAAAAGTTACCTC---TTATTATGACATTCACCGGCAAACACGTAGAATGCTGTTAAGATGGGCGTAACGCaccatgggaacatcgttaggccatttccgtctatgtatggaatgataaccttaaaatacccatcttatatc
gi|19 : gttacatgatgtacacatattatgagatatactaaatttctactacagcactgttATATAGGTCTAAAGGATGTGACAAATAATGGC-TAATGACCCATTATTCCCA---ATTGTACTTGCCA--CGAGTTCGAAATAAT-AATCTTCCGAAAT--A-TCATA-TTTCT-TATTTCACTAGCCTAGT-CAAATAAAAAGAAC--GAATGTTCCGTTAATTTGCGATACGA----------------TTTG-C-CGATTTATGTGAATCACGT-GGATAATTAATTACGCATGCAACAAAaactttaaataagttacaaatac
gi|2 : tAGTGACGTTA----TAACCAACTTTTT-CACTATA-------------------A----A----------ATGAAGCGAATAAAAA-AAGCATACATGCCTAAA--TT----------ATGGT-TAACGACCCATTTTTTCTA---ACTCTACCTGTCA--CAAGTTCAAAATAAC-AATCTTCCAAAAT--ATTTTTT-TTTCT-TATTTGGCTGACACAGC-GGAATAAGAAAAAC--GAAGGTTCCGTTAATTACCGATATGAACCGAAGA--G-AGT-TTTGAC-CGATTTCCGTGAATCACGC--TACACATTATCACG-GTGTATT--ACACTGAA----TACTCATTTCACATCG---TTA----TTG-ATTT---ACA--TAGACTCTTTCACGAAGAAGGTGGTCA-----A-AAAATAAAAATACTTACTGATGCCATTTCTGTT-CA-TATTG-TGCGCAGAATTGCTGACAAAAGTGTTGTTTTG-------------AAAATG-----------TACCTTCA------ACT-------------------T--------------CA-----GGAAAATTGCTTTTGACATAAATTATGCAAATGAGATCGTGCAGGCGAT--CG----T--------TCA-CGATGACGTA--TTTTGAGTCTGAAACTGATAC---G-GTATTATGTTTTT--ATTATT---CGTGTTTCTCTATTTCTAATACATTTTCTTCAA-GTTTGTATGCGACAATAATAATTTTAA-CTGTACAGCAACCAACCAGAGCGAAATTAGCTC---TTATTATGACATTCACCGGTTAACACGGACACTGCTG-TAAGATGGGTATAACGTCt
gi|20 : AAGTGGTGTAA----TGCCCA--TCTTT-CACTGTG-------------------A----A----------ACTGGGCGAA--AAAA-AAGCATAGAGGTCTAAAGGTTGTGATAAATAATGGC-TAACGACCCATTAATACCA---ACTGTACCTGCCA--CGAGTTCGAAATAAT-AATCTTTCAAAAT--A-TCATTGTTTCT-TATTTCACTGCCCTAGT-CAAACAAGAAAAAC--GAAGGTTCCGTTAATTTCCGATAT
gi|21 : AAATGGTGTAA----TGCCCA--TAAAT-CACTGTA-----TTTTTTAT----AAA----A----------ATTAAGCGAA--AAAA-AACCATATAGATCTAAAGGTTGTGGTAAATAATGGC-TAACGACCTATTATTCCCA---TCTCTACCTGCCA--CGAGTTCGATATAAT-AAGCTTCCAAAA---A-T-ATT-TATCTCTATT
gi|22 : aTGACGTTA----TGCCCA--TTTTC-C-CTGTA-------------------A----A----------ATTAAGCTAA--AACA-AAGCATACAGGTCTTAAGGTTGT---AAAAAATGGC-TAAAGACCTATTAATATTAGTTACTCTACCTGCCA--CGAGTTCGAAATAAT-AATCTTCCAAAAT--A-T
gi|23 : TGACGTTA----TGCCCA--TTTTC-C-CTGTA-------------------A----A----------ATTAAGCTAA--AACA-AAGCATACAGGTCTTAAGGTTGT---AAAAAATGGC-TAAAGACCTATTAATATTAGTTACTCTACCTGCCA--CGAGTTCGAAATAAT-AATCTTCCAAAAT--A-Tttgccgatttgttaacatgtttga
gi|24 : CTCTACTTCTAATACATTTTCTTTAA-GTTTTTGTGCAGCAATAACAGTTTTAA-CTGCACAGCAACCGACCAGAGTGAAATTAGCTC---TGGTTATGACATTCACCGGTAAACACATAGAATGCTG-TAAGATGGACATAATGttgccgatttgttaacatgtttg
gi|27 : TTTTAAACTGCACAGCAACCGACCAGAGCGAAATTAGCTC---TTATTATGACATTCACCGGTAAACATATAGAATGCCG-TAAGATGGGCATTACGCC
gi|28 : TATT---TGTATTTATCTATTTCTCATACATTTTCTTCAA-GTTTTTATGTGACAATAAAAGTTTTAA-CTGAACAGCATCTGACTAAAGCGA
gi|3 : AAGTGGTGTAA----TGCCCA--TTTAT-CACTGTA-----TTTTTTTTTATAAAA----A----------AATAAGTGAA--AAAA-A-GTATATAGGTCTAAAAATTGTGGTAAATAATGGC-TAACGACCCATTATTCCCA---TTTCTACCTGTCA--CGAGTTCGAAATAAT-AATCTTCCAAAAT--A-TCATT-TTTCT-TATTCCACTAGCCTAGT-CAAATAAGAAAAAC--GACGGTTCCGTTCATTTCAGATGTGACCCGAAGC--G-GGT-TTTG-C-CGATTTCCGTGAATCACAC-GGGCAAATAATTATGCAGGTAACAAACACTGTGTATTTACTCGTTTCACGTTT--TTTT----TTCCATTT---ACA--TACACTCTTTCACGAAGCAGACGGCCACTTATATAAACTAAAAATACT-ACCGATATAATTTCTGAT-CC-T-TTTATGCGTAGATTTGTTGACGAAAGTATTGTTCAG-------------AAAATG--------------------------CT-------------------T--------------TA-----GG--------------AATAAATTATGCAAATTAGATCATGC---------------------GAATAA-CGGCGAAGTC--TTTTGAAACCGAAACTAAAAT---G-CT------TTTTTTTATTACT---CGTATTTCTCTATTTCTAATATATTTTCTTCAA-AAGTGTATGCATCAATAACAGTTTAAA-CTGCACAGCAACGGACCAGAGCGAAATTAGCTC------TTATGACATTCACCACTAAACACA-AGACTGCCG-TAAGATGGGCATTACGCCtg
gi|32 : tgAGTGACGTTA----TGTCCA--TTTTT-CACTGT-------------------AA----A----------ATTAAGTG-T--TAAA-AAGCATATCTGTCTAAAGGTTGTG
gi|33 : GCAAGTGTTTACAGGACTGCCA-GAATCA-CAGCGATGTC--TTTTGAAACTGAATCTGAAAT---A-TT------TTTT
gi|34 : GTGATGTAA----TATCCA--TTTTT-GACTGTA-------------------A----A----------ATTAAGCAAA--AGAA-AAGCAAATTGGTCT
gi|35 : AGGTGGTGTAA----TGCCCA--TTTAT-CACTGTA-----ta
gi|4 : taAAGTGATGTAA----TGCCCA--TTTAC-TACTGTAATTTTTTT---------AAA----A----------ATTAAGTGAA--AAAA-A-GCATATTGGTCTAAAGGTTGTGGTAAATAATTGC-AAATGATCCATTATTCCCA---ACTCTAGCTGCAA--CGAATTCGAAATAAT-AATCTTCCAAAGT--A-TCATT-TTTCT-TATTCCACTAGTCTAGTCAAAATAAGAAAAAAAAGAAGGTTCCATTCATTTCCGATGTGAACAGAAG---C-GGTGTTTG-C-TGATTTCCATGAATAACGTTGGA-ACATAATTATGCAAAGAACAAACACTGGGTATTCAATCGTTTCACGGTG--TTTTATTTTTC-ATTT---ACA--TACACTCTTTCACGTAGTAGACGGTCACTTGTATAGACTAAAAATACT-GTCAATGACATATCTGTT-CC-T-TT---ACGTAGATTTGTTGACAAAAGTGTTGTTTTG-------------AAAAT--------------------------ACT-------------------T--------------TA-----GG--------------AATAAATTATGAAAATTAGATCGTGCAAGCGTTTACGGAACTGCTC-GAATCA-CGGCAAAGTC--CTTTGAAATCGAAACTAAAAT---G-CT------TTTTTT-ATTACT---CGTATTTGTCTATTTCTAATATATTTTCTTCAA-CTTTTTATGCAGCAATAACAATTTAAA-CTGCACAGCAGCCGACCAGAGCGAAATCAGCTT---TTATTATGACATTCACCAGTAAACACA-AGAA
gi|5 : AAGTGACGTAA----TGCCCA--TTTTTTCACTATA-------------------A----A----------ATTAAGCGGG--AAAA-G-GCGTATAGTTCTAAAGGTTATG-----------C-TAGCAACCCATTATTCCCA---ACTCCACCTGCTA--CGAGTTCGAAATAAT-AATCTTCTAAAAT--A-T--TT-TTTTT-TGT----CTGACCCAGT-GAAATAAGAAAAAC--GATGGTTCCGTTAACTGCCGATATGAATTGAAGA--CGGGT-TTTG-T---ATTT-----AATCACGC--CACACATTATCATG-GCGTAAT--GCACTGGATACTTACTCGTTTCTCATCA---TTT----TTC-ATTT---ACATTTACACTCTTTCACGATGAAGACGGTCACCTTTATTGACT-CAAATGCTCAATTATGCCATTTCTGTTCCC-T-TTT-TGCGTAGAATTGTTGACATAAGAGTTGTTTTG-------------ACAATG-----------TACCTTCA------ACTTCTGGAACATTGC------T--------------TG-----AG--------------CATAAATTGCGGAAGCTAGATCGTGCAAGCGTTTACAGAACTGACC-GAGTCA-CGACGTACT---TTTTGAAACCGATCCCGAAAC---G--T------TTTTT--AATATT---CGTATTTCTCTGTTCCTAATACATTTTTCTCAA-GTTTTTATGCGACAATAACAGTTTTAA-CTGCACAGGTACCGACCAGCGCGAAATTAGCTC---T---------------CGGTAAACACGTAGAATGTTG-AAAGATGGGCAGAACGTC
gi|6 : taAGTGACGTAA----TGCCCA--TTTTTTCACTATA-------------------A----A----------ATTAAGCGGG--AAAA-G-GCGTATAGTTCTAAAGGTTATG-----------C-TAGCAACCCATTATTCCCA---ACTCCACCTGCTA--CGAGTTCGAAATAAT-AATTTTCCAAAAT--A-TT-TT-TTTTT-TGT----CTGACCCAGC-GAAATAAGAAAAAC--GATGGTTCTGTTAACTGCCGATATGAATTGAAGA--CGGGT-TTTG-T---ATTT-----AATCACGC--CACACATTATCATG-GCGTAAT--GCACTGGATACTTACTCGTTTCTCATCA---TTT----TTC-ATTT---ACATTTACACTCTTTCACGATGAAGACGGTCACTTTTATTGACT-CAAATGCTCAATTATGCCATTTCTGTTCCC-T-TTT-TGCGTAGAATTGTTGACATAAGAGTTGTTTTG-------------ACAATG-----------T------A------ACTTCAACTTCTGGAACATTGCT--------------TG-----AG--------------TATAAATTGTGGAAGCTAGATCGTGCAAGCGTTTACGGAACTGACC-GAGTCA-CGACGTACT---TTTTGAAACCGATCCCGAAAC---G-TT------TTTTT--ATTATT---CGTATTTCTCTGTTTCTAATACATTTTTCTCAA-GTTTTTATGCGACAATAACAGTTTTAA-CTGCACAGGTACCGACCAGCGCGAAATTAGCTC---T---------------CGGTAAACACGTAGAATGTTG-TAAGATGGACAGAACG
gi|7 : AGGTCTTAAGTTTGTGTTAAATAATGGC-TAACGACCCATCATTTTCA---ACTAAACCGGTTATTCGAGTTCGAAATAAT-AATCTTCCAAAAT--A--CTTT-TTT-----TTTGACTGACCCAGT-GAATTAAGAAAAAC--GAAGGTTCCGTTA-TTGCCGATATGAACCGAAGA--C-G------------ATTTCCGTGAATCACGC--TGTACATTGTCACG-GCATAACA--CGCTGTATACATACTCATTTCATATC------------------------A--TACACTCTTTCATGATGAAGACGGTCACTTTTATTGACTTAAA-TACTTACCGATTTCAATTCTGTT-CT-T-TTT-TGTGTAGAAATGCTGAAGAAAGAGTTGTTTTGTTTTTCAACTTTCGAAACA-----------T------T------GCT-------------------T--------------TG-----GT--------------CATAAATTATGCAAATTAGGTCGCGTTAGCGTTTACGGAACTGCCC-GAACCAACGCCTAAGTTATTTTTGAAACCGAAACTGTAAT---G-AT------TTTTT--ATTACT---CGTATTTCTCTATTTCTAATATATTTTCTTCAA-GTTGTTATACGACAATAATAGTTTTAA-ATACACAGCAATCAACTAGAGCGAAATTAGCTCCTATTGTTATGACTTTCGCCGGCAAACAAATAAAATGCTG-TAAGATGGGCATAGCt
gi|8 : ctaattttcagtgtaaaattaATTCCCA---TCTCTACCTGC----------------AAT-AATCTTCCAAAGT--A-TCATT-TTTCT-TATTTCACTAGTCTAGA-CAAATAAG-AAAAC--GAAGGTTTCGTTCATTTCCGATGTGAACCGAA-A--CAGAT-TTTG-C-TGATTTCCGTGAATCACGT-GGGCAAATAATTATGCATGCAACAAACACTGGGTATTCACTCGTTTTACGTT---TTTT----TTC-ATTT---ACA--TACACTCTTACACGAAGCAGACGATCATTTGTATAGACTTAAAATAC-TACCGATACAATGTGTGTT-CC-T-TTTATTCGTAGATTTGTTGACGAAAATTTTGTTTAG-------------AAAATG--------------------------CT-------------------T--------------TA-----GG--------------AATAAGTTATGCAAATTAGATCGTGCAAGCGCTTACGAAACAGCTC-GTATCA-CGACGAAGTC--TTTTGAAACCGAAACTAAAAT---GCTT------TTTTT--ATTACT---CGTATTTCTCTATTTCTAATATATTTTCTTCAA-AATTGTATGCATCAACAACAGTTTAAA-CTGCACAGCAACGGATCAGAGCGAAATTAGCTC---TTGTTATGACATTCACCGGTAAACGCA-AGAATGCCG-TTAGATGGACatc
gi|9 : AAGTGATGTAA----TACCCA--TTTTT-GACTGTA-----------------AAAT---A----------ATTA
gi|9 : taAAATAAT----TA-CAATCCACTATTTGTA---ACTCTTCCTGCCA--TGAGTTAGAAATAAT-AATCTTCCAAAAT--A-TTTTT-GTTCT-TATTT----GACCTAGT-GAAATAA-AAAAAC--A-------CATTAATTACCAATATGAACCAAAGA--T-GGTATTTA-C-TGATTTC---------CGT-GAA----TTAT----------------GCTGGATA--TA-TCATTTCATGTCC--TTTT----TT--ATTT---ACA--CACACT--TTCACAAAGAAGAC----------------TAAAAATACTTAGCGATGCCATTTCTGTT-TCAT-TTT-TGCATAGAATTGTTGACAAAAGAACTATTTTG-------------AAAATC-----------T------A------ACT-------------------T--------------TAATATGGG--------------TATAAATTATACAAATTTGATCATGCAAGCGTTTATGGAACTGCCCCAAATCA-CGGAGAGGGC--TTTTGAAACCGTAACCGAAAA---G-AT------GTTTT--ATTATT---T-------TCTATTTCTAATACATTTTCTATAA-GTCTTTATGCGACAATAATAGGTTTAA-CTTCACTATAACCAACCAGAGCAAA-------------ATTATAAAATTCACCGGTAAACACATAGAA-GCTG-TAAGATGAGCATAcaatccactatttgtaactcttcctgccatgagttagaaataataatcttccaaaatatttttgttcttatttgacctagtgaaataaaaaaacacattaattaccaatatgaaccaaagatggtatttactgatttccgtgaattatgctggatatatcatttcatgtccttttttatttacacacactttcacaaagaagactaaaaatacttagcgatgccatttctgtttcatttttgcatagaattgttgacaaaagaactattttgaaaatctaactttaatatgggtataaattatacaaatttgatcatgcaagcgtttatggaactgccccaaatcacggagagggcttttgaaaccgtaaccgaaaagatgttttattattttctatttctaatacattttctataagtctttatgcgacaataataggtttaacttcactataaccaaccagagcaaaattataaaattcaccggtaaacacatagaagctgtaagatgagcata
5 sequences could not be aligned to this reference sequence:
Unaligned ( gi|25 ): TTTCAAGCATAATTTTGGATAAAATTAGCCTTATTCTAGATATGCGATTGATTGTAACGCCAAAAGTGTCACAAATATTAAATATATTTGGCATCATGAAACAACCGTTAGTAAACA
Unaligned ( gi|26 ): GATTCGGACAAACCTTTGGACAAAATCAACCTTGTTTGAGAAATGCGGTTGATTTTAACGTCAAAAACATTTATAATTTTTAACGTTTTTTGACGT
Unaligned ( gi|29 ): TTGATAACAATGTCGAAAATGTCACAATTCTTAATTGTGTTTGACAATTCATGATGCAACAGTTGCTTAACAAAAAGCATATTGTTTGCC
Unaligned ( gi|30 ): GATTGATTATAACAAAAAACATGACGCAATAATTAACGGAGTGTGACGTCATGAAGCAGGTAACCAAAATGTGTAACCTTTATCGTT
Unaligned ( gi|31 ): TTAAGTTCAGTCATAATTTTTGATAAAATCGACCTTGTTCGAGAGTATCGATTGATTTTCAATAAAAATATCAAAATTCAA
Alignments
lowQualScore : 111111111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 7777777777777777777 1111111111 111111111 2222 22222222222 1111 1111111111111 111111111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 0 5555 33 0 4 2222222222222222222 7777 0000000000 66 777 77 2 777 22 2 22 2 22 2 2 8 66 33 1 555555555 3 555 1 4444 3 2 2 66 2 44444444444 0 77 1 8888 6666 555 555 88 0 4 3 4 2 5 5 5 8 1 3 5555555555555 888888888888888888888888888888888888888888888888888888888888888888888888888888888888888 5 2 444 555 99 777777 66 444 2 2 888888 6 3
lowQualScore : . .... .. . . ................... .... .......... .. ... .. . ... .. . .. . .. . . . .. .. . ......... . ... . .... . . . .. . ........... . .. . .... .... ... ... .. . . . . . . . . . . . ............. ....................................................................................... . . ... ... .. ...... .. ... . . ...... . .
lowQualScore : 2 0000 22 1 7 8888888888888888888 4444 3333333333 99 888 00 4 444 99 1 99 1 99 4 4 2 99 77 0 999999999 1 222 5 3333 6 9 9 44 2 44444444444 5 00 5 0000 5555 000 444 55 4 5 2 5 8 7 7 7 6 0 8 7777777777777 222222222222222222222222222222222222222222222222222222222222222222222222222222222222222 7 9 000 000 44 777777 88 777 5 5 111111 7 1
consensus : AAGTGACGTAA----TGCCCA--TTTTT-CACTGTA-----TTT---------AAA----A----------ATTAAGCGAA--AAAA-AAGCATATAGGTCTAAAGGTTGTGGTAAATAATGGC-TAACGACCCATTATTCCCA---ACTCTACCTGCCA--CGAGTTCGAAATAAT-AATCTTCCAAAAT--A-TCATT-TTTCT-TATTTCACTGACCCAGT-GAAATAAGAAAAAC--GAAGGTTCCGTTAATTNCCGATATGAACCGAAGA--C-GGT-TTT-G-CCGATTTCCGTGAATCACGC--GNACACA-TT-AT-CACG--GCGTAACAAACGCTGGATACTTACTCGTTTCACGTCG--TTTT----TTC-ATTT---ACA--TACACTCTTTCACGAAGAAGACGGTCACTTNTATNGACTAAAAATACTTACCGATGCCATTTCTGTT-CC-T-TTT-TGCGTAGANTTGTTGACGAAAGNGTTGTTTTG-------------AAAATG-----------T------A------ACT-------------------T--------------TA-----GG--------------CATAAATTATGCAAATTAGATCGTGCAAGCGTTTACGGAACTGCCC-GAATCA-CGGCGAAGTC--TTTTGAAACCGAAACTGAAAT---G-NT------TTTTT--ATTATT---CGTATTTCTCTATTTCTAATACATTTTCTTCAA-GTTTTTATGCGACAATAACAGTTTTAA-CTGCACAGCAACCGACCAGAGCGAAATTAGCTC---TTATTATGACATTCACCGGTAAACACATAGAATGCCG-TAAGATGGGCATAACGCC
Reference ( family-1904 ) : AAGTGACGTAA----TGCCCA--TTTTT-CACTGTA-----TTT---------AAA----A----------ATTAAGCGAA--AAAA-AAGCATATAGGTCTAAAGGTTGTGGTAAATAATGGC-TAACGACCCATTATTCCCA---ACTCTACCTGCCA--CGAGTTCGAAATAAT-AATCTTCCAAAAT--A-TCATT-TTTCT-TATTTCACTGACCCAGT-GAAATAAGAAAAAC--GAAGGTTCCGTTAATTNCCGATATGAACCGAAGA--C-GGT-TTT-G-CCGATTTCCGTGAATCACGC--GNACACA-TT-AT-CACG--GCGTAACAAACGCTGGATACTTACTCGTTTCACGTCG--TTTT----TTC-ATTT---ACA--TACACTCTTTCACGAAGAAGACGGTCACTTNTATNGACTAAAAATACTTACCGATGCCATTTCTGTT-CC-T-TTT-TGCGTAGANTTGTTGACGAAAGNGTTGTTTTG-------------AAAATG-----------T------A------ACT-------------------T--------------TA-----GG--------------CATAAATTATGCAAATTAGATCGTGCAAGCGTTTACGGAACTGCCC-GAATCA-CGGCGAAGTC--TTTTGAAACCGAAACTGAAAT---G-NT------TTTTT--ATTATT---CGTATTTCTCTATTTCTAATACATTTTCTTCAA-GTTTTTATGCGACAATAACAGTTTTAA-CTGCACAGCAACCGACCAGAGCGAAATTAGCTC---TTATTATGACATTCACCGGTAAACACATAGAATGCCG-TAAGATGGGCATAACGCC
gi|1 : AAATGGTGTAA----TGCCCA--TTTAT-CACTGTA-----TTTTTTTC----AAA----A----------AATAAGCGGGGGAAAA-AAGCA----AGTCTAAAGGTTATGGTAAATAATGGC-TAACGACCCATTATTCACA---TCTCTACCTGCCA--CGAGTTCGAAAAAAT-AATTTTCCAAAAT--A-TCATT-TTTCT-TATTTCACTAGCTTAAT-CAAATAAGAATAAC--AAAGGTTCAGTTCGTTTCCGATGTGAACCGAAG---C-GGT-TTTAA-ACGATTTACGTGAATCACGT--GGACAAA-TA-AT-TATGT-ATGCAACAAACACTGGGTAGTCAATCGTTTCACGTTGCTTTTT----TTC-ATTT---ACA--TACACTCTTTCACGAAGCGGACGGTCACTTGTATAAACTAAAAATA-TTACCGATACAATTTATGTT-CC-T-TTCATGCGTAGATTTGTTGACGAAAGTATTGTTTAA-------------AAAAT--------------------------ACT-------------------T--------------TA-----GG--------------AACAAATTATGCAAATTCGATCGCGCAAGCGTTTACGGAACAGCCC-GAATCA-CGGCGAAATC--TTTTGAAACCGAAACTAAAAT---G-CT------TTTTC--ATTACT---CGTATTTCTCTATTTCTAATATAGTTTCCTCAA-AATTGTATGCATCAATAACAGTTTAAA-CTGCACAGCAACCGACCAGAGCGAAATTAGCTC---TTATTATGACATTCACCGGTAAACGCA-AGAATGTCG-TAAGATGGGCATTACGCC
gi|10 : AACAATCCACTATTTGTA---GCTCTTCCTGCCA--TGAGTTAGAAATAAT-AATCTTCCAAAAT--A-TTTTT-GTTCT-TATTT----GACCTAGT-GAAATA-GAAAAAC--A-------CATTAATTACCAATATGAACCAAAGA--T-GGTATTT-A-CTGATTTCCGTGAA----------------TT-AT------------------GTTGGATA--TA-TCATTTCATGTCG--TTTT----T-C-ATTT---ACA--CACACACTTTCACAAAGAAGAC----------------TAAAAATACTTAGCGATGCCATTTCTGTT-TCAT-TTT-TGCATAGAATTGTTGACGAAAAAACTGTTTTG-------------AAAATC-----------T------A------ACT-------------------T--------------TAATTTGGG--------------TATAAATTATACACATTTGATCATGCAAGCATTTATGGAACTGCCCCAAATCA-CGACGAGGGC--TTTTGAAACCTTAACCGAAAT---G-AT------GTTTT--ATCATT-----------TCTATTTCTAATACATTTTCTATAA-GTCTTTATGAGACAATAATAGGTTTAA-CTTCACTATAACCAACCAGAGCAAAATTA--TC-----------AAATTCACCGGTAAAC-CATAGAA-GCTG-TAAGATGAGCATAA
gi|11 : cAA----A----------ATTAAGC-AA--AATG-AAGTATACAGGTCTAAAGGTTGTGGTAA----TGGC-TAACAACCTATTATTGCCA---ACTCCACATGCCC--TGAGTTTGAAATAAT-AATTTTCCAAAAT--A-TTATT-TTTCT--ACTTATCTGACCCAGT-GAAATAAGAAGATT--GAAGGTTCCGTTAATTACCGATATGAATCGTAGA--T-GGG-TTT-A-CCAATTTCTGTGCATGTCGC---TACACA-TT-AT-CACA--GTGTAAC--ACGATGGAAACATACTCATTTCACATCG---TTT----TTC-ATTT---ACA--TACACTCTTTCACGAAGAAGACTG--ACTTTTATTAACTTAATATACTAACAGATGTCATTTCTGTT-CT-T-TTT-TGTGTAAAATTTTTGAAGAAAGAGTTGTTTTG-------------AAAATGTATCTTCAACTT------A------ACT-------------------T--------------TA-----GG--------------CTTAAATTTTGCAAATTAGACCATGCAAGTGt
gi|12 : tACACA-TT-AT-CACG--GCGTAA--AACGCTGGGTACTTACTCGTCACACATGG--TTTT----T-C-ATTT---ACA--TAC--TCTTTCACGAAGCAGACGGTCACCTGTATTGACTAAAAATACTTACCGATGCCATTTCTGTT-CT-TGTTT-TGCGTTGATTTGATGATGGAAGTGTTGTTTTC-------------AAATTG-----------TATCTTCA------ACT-------------------TCCGGAATATCGCTATA-----GG--------------AATAACTTATGCAAAGTAGATCGT----GCGTTTACGGAACTGCCC-GAATAA-CGGCGAAGTC--TTTTCAAACCGAAACTAAAAT---G--T------TTCTT--ATTATTACCCGTATTTCTCTATTTCTTATATATTTTCTTCAA-TTTT
gi|13 : gctAATGACGTTA----GGCTCA--CTTTT-CATTGTA-------------------A----A----------TTTAAGCGTT--AAAA---GCATATAGGTAAAAAGGTTGTGG-AAATAA-AACATAACTACCCGTTATTCCCA---ACTCTATATGCAA--CGAAGTTGAACTAAT-AATCTTCCAAAAT--A-ACATT-TTC----ATTTGACTGAATCAGT-GAAATCAGAAAAAT--GAATGTTCTGTTAATTACCGATATGAACTGAAAATTC-T-T-TTT-G-TCGATT-CCGTGAATCACGC---TACACA-TT-AA-AATG--GCGTAAT--ACTCTTTATATTCACTCATTTAACATCG--GTTT----TT--ATTTGTAATA--AATATTCTTTAACGAAGAAGACGGTTA
gi|14 : TGTT-CC-T-TTT-TGCATAGATTTGATGACAAAAG--TTGTTTTG-------------AAAATG-----------T------ATCTTCAACT-------------------TCCAGAATATTGTTTTG-----GG--------------CATAAATTATGAAAATTAGATCGTGCAAGCATTGACATAACTGCCC-AAATCA-CGTTGAA-TC--TTTTGAAAC------TGAAAT---G-AT------CTTTT--CTTATG---CATACTTCTCTATTTCCAATACATTTTGTACAA-GTTTT-ATGAGACAATAACAGCTTAAA-CTGCACAGCAACCGACCAGAGTGAAAATAGCTT---TTATTATGACATTCACTGGTAAACATATAGAATGCCG-CAAGATGAGCATaa
gi|15 : ATTGACTAAAA-TATTTACCGATGCCAGTTCTGTT-A----TTT-TGCATAGAATAATTGATGAAAGAGATGTTTTG-------------AAAATG-----------T------ATATCA-ACT-------------------TCCGGTACAATGCGTTG-----GG--------------CATAGATTTTGCAACTAATATCGTGCATGCGTTTACGAACCTGCTA-GAATCA-CAGCATCGTC--TTTTGAAACTGAAACT-AAATTAAG-GT------TT--------------CGTATTTCTCTATTCCTTATACATTGCCGTCAC-GTTTTTATGCGACAATTACAGTTTTAA-CTGCACAGCAACCGACAAAAGCGAAAGTAGCTC---TTATTATTACATTCATCttcaccac
gi|16 : AAATGGCGTAACTTTTGCC-A--TT----CACAATA-----TTT---------AAA----ATAACGATAAAATTAAGCGAA--ATAG---GCATATAGGTCTAAAGGATGTGGTACATAACGGC-TAACGACCCATTATTTCAT---ACTCTACCTGTCA--CGAGTTCGAACAAAT-AATCTTCC----T--T-TTATT-TTATT---TTTTAATGACCC--TAGAAATTAAAAAAAtgg
gi|17 : gggcatacttttgtatacataaaccttttttgattggtcgtaacgtcaaaaatgttacagttattaacggtttttgacgtcatgaagcaacggttcccaaatTGGTGTTA----TGCCCA--TATTT-CACTGTAAA---TTT---------GCAGCTGA----------ATTGAGCGGA--AAAGGAAGCATATAGGTCTAAAGGCTGTGGTAACTAATGGC-AAAATA-TCATTTTTCTT---------------------AGT---AAATATTCAATC------AATCAA-TCA----ATCT-TAGTTAACTGCCCCTGT--------CAAAAAT--GAAGGTTCTGTTAATTGCCGATATTAATCAAAGT--C-Gtc
gi|18 : tT------TTTTT--ATTATT---CGAATTTCTCTATTTTTA-TACATTTTCTTTAATATTTTTA--CGACAATAATAGTTTTAA-CTGCACAGAAACTGACCAGAGAAAAGTTACCTC---TTATTATGACATTCACCGGCAAACACGTAGAATGCTGTTAAGATGGGCGTAACGCaccatgggaacatcgttaggccatttccgtctatgtatggaatgataaccttaaaatacccatcttatatc
gi|19 : gttacatgatgtacacatattatgagatatactaaatttctactacagcactgttATATAGGTCTAAAGGATGTGACAAATAATGGC-TAATGACCCATTATTCCCA---ATTGTACTTGCCA--CGAGTTCGAAATAAT-AATCTTCCGAAAT--A-TCATA-TTTCT-TATTTCACTAGCCTAGT-CAAATAAAAAGAAC--GAATGTTCCGTTAATTTGCGATACGA----------------TTT-G-CCGATTTATGTGAATCACGT--GGATA-A-TTAAT-TACGC-ATGCAACAAAaactttaaataagttacaaatac
gi|2 : tAGTGACGTTA----TAACCAACTTTTT-CACTATA-------------------A----A----------ATGAAGCGAATAAAAA-AAGCATACATGCCTAAA--TT----------ATGGT-TAACGACCCATTTTTTCTA---ACTCTACCTGTCA--CAAGTTCAAAATAAC-AATCTTCCAAAAT--ATTTTTT-TTTCT-TATTTGGCTGACACAGC-GGAATAAGAAAAAC--GAAGGTTCCGTTAATTACCGATATGAACCGAAGA--G-AGT-TTT-GACCGATTTCCGTGAATCACGC---TACACA-TT-AT-CACG--GTGTATT--ACACTGAA----TACTCATTTCACATCG---TTA----TTG-ATTT---ACA--TAGACTCTTTCACGAAGAAGGTGGTCA-----A-AAAATAAAAATACTTACTGATGCCATTTCTGTT-CA-TATTG-TGCGCAGAATTGCTGACAAAAGTGTTGTTTTG-------------AAAATG-----------TACCTTCA------ACT-------------------T--------------CA-----GGAAAATTGCTTTTGACATAAATTATGCAAATGAGATCGTGCAGGCGAT--CG----T--------TCA-CGATGACGTA--TTTTGAGTCTGAAACTGATAC---G-GTATTATGTTTTT--ATTATT---CGTGTTTCTCTATTTCTAATACATTTTCTTCAA-GTTTGTATGCGACAATAATAATTTTAA-CTGTACAGCAACCAACCAGAGCGAAATTAGCTC---TTATTATGACATTCACCGGTTAACACGGACACTGCTG-TAAGATGGGTATAACGTCt
gi|20 : AAGTGGTGTAA----TGCCCA--TCTTT-CACTGTG-------------------A----A----------ACTGGGCGAA--AAAA-AAGCATAGAGGTCTAAAGGTTGTGATAAATAATGGC-TAACGACCCATTAATACCA---ACTGTACCTGCCA--CGAGTTCGAAATAAT-AATCTTTCAAAAT--A-TCATTGTTTCT-TATTTCACTGCCCTAGT-CAAACAAGAAAAAC--GAAGGTTCCGTTAATTTCCGATAT
gi|21 : AAATGGTGTAA----TGCCCA--TAAAT-CACTGTA-----TTTTTTAT----AAA----A----------ATTAAGCGAA--AAAA-AACCATATAGATCTAAAGGTTGTGGTAAATAATGGC-TAACGACCTATTATTCCCA---TCTCTACCTGCCA--CGAGTTCGATATAAT-AAGCTTCCAAAA---A-T-ATT-TATCTCTATT
gi|22 : aTGACGTTA----TGCCCA--TTTTC-C-CTGTA-------------------A----A----------ATTAAGCTAA--AACA-AAGCATACAGGTCTTAAGGTTGT---AAAAAATGGC-TAAAGACCTATTAATATTAGTTACTCTACCTGCCA--CGAGTTCGAAATAAT-AATCTTCCAAAAT--A-T
gi|23 : TGACGTTA----TGCCCA--TTTTC-C-CTGTA-------------------A----A----------ATTAAGCTAA--AACA-AAGCATACAGGTCTTAAGGTTGT---AAAAAATGGC-TAAAGACCTATTAATATTAGTTACTCTACCTGCCA--CGAGTTCGAAATAAT-AATCTTCCAAAAT--A-Tttgccgatttgttaacatgtttga
gi|24 : CTCTACTTCTAATACATTTTCTTTAA-GTTTTTGTGCAGCAATAACAGTTTTAA-CTGCACAGCAACCGACCAGAGTGAAATTAGCTC---TGGTTATGACATTCACCGGTAAACACATAGAATGCTG-TAAGATGGACATAATGttgccgatttgttaacatgtttg
gi|27 : TTTTAAACTGCACAGCAACCGACCAGAGCGAAATTAGCTC---TTATTATGACATTCACCGGTAAACATATAGAATGCCG-TAAGATGGGCATTACGCC
gi|28 : TATT---TGTATTTATCTATTTCTCATACATTTTCTTCAA-GTTTTTATGTGACAATAAAAGTTTTAA-CTGAACAGCATCTGACTAAAGCGA
gi|3 : AAGTGGTGTAA----TGCCCA--TTTAT-CACTGTA-----TTTTTTTTTATAAAA----A----------AATAAGTGAA--AAAA-A-GTATATAGGTCTAAAAATTGTGGTAAATAATGGC-TAACGACCCATTATTCCCA---TTTCTACCTGTCA--CGAGTTCGAAATAAT-AATCTTCCAAAAT--A-TCATT-TTTCT-TATTCCACTAGCCTAGT-CAAATAAGAAAAAC--GACGGTTCCGTTCATTTCAGATGTGACCCGAAGC--G-GGT-TTT-G-CCGATTTCCGTGAATCACAC--GGGCAAA-TA-AT-TATGCAG-GTAACAAACACTGTGTATTTACTCGTTTCACGTTT--TTTT----TTCCATTT---ACA--TACACTCTTTCACGAAGCAGACGGCCACTTATATAAACTAAAAATACT-ACCGATATAATTTCTGAT-CC-T-TTTATGCGTAGATTTGTTGACGAAAGTATTGTTCAG-------------AAAATG--------------------------CT-------------------T--------------TA-----GG--------------AATAAATTATGCAAATTAGATCATGC---------------------GAATAA-CGGCGAAGTC--TTTTGAAACCGAAACTAAAAT---G-CT------TTTTTTTATTACT---CGTATTTCTCTATTTCTAATATATTTTCTTCAA-AAGTGTATGCATCAATAACAGTTTAAA-CTGCACAGCAACGGACCAGAGCGAAATTAGCTC------TTATGACATTCACCACTAAACACA-AGACTGCCG-TAAGATGGGCATTACGCCtg
gi|32 : tgAGTGACGTTA----TGTCCA--TTTTT-CACTGT-------------------AA----A----------ATTAAGTG-T--TAAA-AAGCATATCTGTCTAAAGGTTGTG
gi|33 : GCAAGTGTTTACAGGACTGCCA-GAATCA-CAGCGATGTC--TTTTGAAACTGAATCTGAAAT---A-TT------TTTT
gi|34 : GTGATGTAA----TATCCA--TTTTT-GACTGTA-------------------A----A----------ATTAAGCAAA--AGAA-AAGCAAATTGGTCT
gi|35 : AGGTGGTGTAA----TGCCCA--TTTAT-CACTGTA-----ta
gi|4 : taAAGTGATGTAA----TGCCCA--TTTAC-TACTGTAATTTTTTT---------AAA----A----------ATTAAGTGAA--AAAA-A-GCATATTGGTCTAAAGGTTGTGGTAAATAATTGC-AAATGATCCATTATTCCCA---ACTCTAGCTGCAA--CGAATTCGAAATAAT-AATCTTCCAAAGT--A-TCATT-TTTCT-TATTCCACTAGTCTAGTCAAAATAAGAAAAAAAAGAAGGTTCCATTCATTTCCGATGTGAACAGAAG---C-GGTGTTT-G-CTGATTTCCATGAATAACGTTGGAACATAATT-ATGCAAA--G---AACAAACACTGGGTATTCAATCGTTTCACGGTG--TTTTATTTTTC-ATTT---ACA--TACACTCTTTCACGTAGTAGACGGTCACTTGTATAGACTAAAAATACT-GTCAATGACATATCTGTT-CC-T-TT---ACGTAGATTTGTTGACAAAAGTGTTGTTTTG-------------AAAAT--------------------------ACT-------------------T--------------TA-----GG--------------AATAAATTATGAAAATTAGATCGTGCAAGCGTTTACGGAACTGCTC-GAATCA-CGGCAAAGTC--CTTTGAAATCGAAACTAAAAT---G-CT------TTTTTT-ATTACT---CGTATTTGTCTATTTCTAATATATTTTCTTCAA-CTTTTTATGCAGCAATAACAATTTAAA-CTGCACAGCAGCCGACCAGAGCGAAATCAGCTT---TTATTATGACATTCACCAGTAAACACA-AGAA
gi|5 : AAGTGACGTAA----TGCCCA--TTTTTTCACTATA-------------------A----A----------ATTAAGCGGG--AAAA-G-GCGTATAGTTCTAAAGGTTATG-----------C-TAGCAACCCATTATTCCCA---ACTCCACCTGCTA--CGAGTTCGAAATAAT-AATCTTCTAAAAT--A-T--TT-TTTTT-TGT----CTGACCCAGT-GAAATAAGAAAAAC--GATGGTTCCGTTAACTGCCGATATGAATTGAAGA--CGGGT-TTT-G-T--ATTT-----AATCACGC---CACACA-TT-AT-CATG--GCGTAAT--GCACTGGATACTTACTCGTTTCTCATCA---TTT----TTC-ATTT---ACATTTACACTCTTTCACGATGAAGACGGTCACCTTTATTGACT-CAAATGCTCAATTATGCCATTTCTGTTCCC-T-TTT-TGCGTAGAATTGTTGACATAAGAGTTGTTTTG-------------ACAATG-----------TACCTTCA------ACTTCTGGAACATTGC------T--------------TG-----AG--------------CATAAATTGCGGAAGCTAGATCGTGCAAGCGTTTACAGAACTGACC-GAGTCA-CGACGTACT---TTTTGAAACCGATCCCGAAAC---G--T------TTTTT--AATATT---CGTATTTCTCTGTTCCTAATACATTTTTCTCAA-GTTTTTATGCGACAATAACAGTTTTAA-CTGCACAGGTACCGACCAGCGCGAAATTAGCTC---T---------------CGGTAAACACGTAGAATGTTG-AAAGATGGGCAGAACGTC
gi|6 : taAGTGACGTAA----TGCCCA--TTTTTTCACTATA-------------------A----A----------ATTAAGCGGG--AAAA-G-GCGTATAGTTCTAAAGGTTATG-----------C-TAGCAACCCATTATTCCCA---ACTCCACCTGCTA--CGAGTTCGAAATAAT-AATTTTCCAAAAT--A-TT-TT-TTTTT-TGT----CTGACCCAGC-GAAATAAGAAAAAC--GATGGTTCTGTTAACTGCCGATATGAATTGAAGA--CGGGT-TTT-G-T--ATTT-----AATCACGC---CACACA-TT-AT-CATG--GCGTAAT--GCACTGGATACTTACTCGTTTCTCATCA---TTT----TTC-ATTT---ACATTTACACTCTTTCACGATGAAGACGGTCACTTTTATTGACT-CAAATGCTCAATTATGCCATTTCTGTTCCC-T-TTT-TGCGTAGAATTGTTGACATAAGAGTTGTTTTG-------------ACAATG-----------T------A------ACTTCAACTTCTGGAACATTGCT--------------TG-----AG--------------TATAAATTGTGGAAGCTAGATCGTGCAAGCGTTTACGGAACTGACC-GAGTCA-CGACGTACT---TTTTGAAACCGATCCCGAAAC---G-TT------TTTTT--ATTATT---CGTATTTCTCTGTTTCTAATACATTTTTCTCAA-GTTTTTATGCGACAATAACAGTTTTAA-CTGCACAGGTACCGACCAGCGCGAAATTAGCTC---T---------------CGGTAAACACGTAGAATGTTG-TAAGATGGACAGAACG
gi|7 : AGGTCTTAAGTTTGTGTTAAATAATGGC-TAACGACCCATCATTTTCA---ACTAAACCGGTTATTCGAGTTCGAAATAAT-AATCTTCCAAAAT--A--CTTT-TTT-----TTTGACTGACCCAGT-GAATTAAGAAAAAC--GAAGGTTCCGTTA-TTGCCGATATGAACCGAAGA--C-G------------ATTTCCGTGAATCACGC---TGTACA-TT-GT-CACG--GCATAACA--CGCTGTATACATACTCATTTCATATC------------------------A--TACACTCTTTCATGATGAAGACGGTCACTTTTATTGACTTAAA-TACTTACCGATTTCAATTCTGTT-CT-T-TTT-TGTGTAGAAATGCTGAAGAAAGAGTTGTTTTGTTTTTCAACTTTCGAAACA-----------T------T------GCT-------------------T--------------TG-----GT--------------CATAAATTATGCAAATTAGGTCGCGTTAGCGTTTACGGAACTGCCC-GAACCAACGCCTAAGTTATTTTTGAAACCGAAACTGTAAT---G-AT------TTTTT--ATTACT---CGTATTTCTCTATTTCTAATATATTTTCTTCAA-GTTGTTATACGACAATAATAGTTTTAA-ATACACAGCAATCAACTAGAGCGAAATTAGCTCCTATTGTTATGACTTTCGCCGGCAAACAAATAAAATGCTG-TAAGATGGGCATAGCt
gi|8 : ctaattttcagtgtaaaattaATTCCCA---TCTCTACCTGC----------------AAT-AATCTTCCAAAGT--A-TCATT-TTTCT-TATTTCACTAGTCTAGA-CAAATAAG-AAAAC--GAAGGTTTCGTTCATTTCCGATGTGAACCGAA-A--CAGAT-TTT-G-CTGATTTCCGTGAATCACGT--GGGCAAA-TA-AT-TATGC-ATGCAACAAACACTGGGTATTCACTCGTTTTACGTT---TTTT----TTC-ATTT---ACA--TACACTCTTACACGAAGCAGACGATCATTTGTATAGACTTAAAATAC-TACCGATACAATGTGTGTT-CC-T-TTTATTCGTAGATTTGTTGACGAAAATTTTGTTTAG-------------AAAATG--------------------------CT-------------------T--------------TA-----GG--------------AATAAGTTATGCAAATTAGATCGTGCAAGCGCTTACGAAACAGCTC-GTATCA-CGACGAAGTC--TTTTGAAACCGAAACTAAAAT---GCTT------TTTTT--ATTACT---CGTATTTCTCTATTTCTAATATATTTTCTTCAA-AATTGTATGCATCAACAACAGTTTAAA-CTGCACAGCAACGGATCAGAGCGAAATTAGCTC---TTGTTATGACATTCACCGGTAAACGCA-AGAATGCCG-TTAGATGGACatc
gi|9 : AAGTGATGTAA----TACCCA--TTTTT-GACTGTA-----------------AAAT---A----------ATTA
gi|9 : taAAATAAT----TA-CAATCCACTATTTGTA---ACTCTTCCTGCCA--TGAGTTAGAAATAAT-AATCTTCCAAAAT--A-TTTTT-GTTCT-TATTT----GACCTAGT-GAAATAA-AAAAAC--A-------CATTAATTACCAATATGAACCAAAGA--T-GGTATTT-A-CTGATTTCCGTGAA----------------TT-AT------------------GCTGGATA--TA-TCATTTCATGTCC--TTTT----TT--ATTT---ACA--CACACT--TTCACAAAGAAGAC----------------TAAAAATACTTAGCGATGCCATTTCTGTT-TCAT-TTT-TGCATAGAATTGTTGACAAAAGAACTATTTTG-------------AAAATC-----------T------A------ACT-------------------T--------------TAATATGGG--------------TATAAATTATACAAATTTGATCATGCAAGCGTTTATGGAACTGCCCCAAATCA-CGGAGAGGGC--TTTTGAAACCGTAACCGAAAA---G-AT------GTTTT--ATTATT---T-------TCTATTTCTAATACATTTTCTATAA-GTCTTTATGCGACAATAATAGGTTTAA-CTTCACTATAACCAACCAGAGCAAA-------------ATTATAAAATTCACCGGTAAACACATAGAA-GCTG-TAAGATGAGCATAcaatccactatttgtaactcttcctgccatgagttagaaataataatcttccaaaatatttttgttcttatttgacctagtgaaataaaaaaacacattaattaccaatatgaaccaaagatggtatttactgatttccgtgaattatgctggatatatcatttcatgtccttttttatttacacacactttcacaaagaagactaaaaatacttagcgatgccatttctgtttcatttttgcatagaattgttgacaaaagaactattttgaaaatctaactttaatatgggtataaattatacaaatttgatcatgcaagcgtttatggaactgccccaaatcacggagagggcttttgaaaccgtaaccgaaaagatgttttattattttctatttctaatacattttctataagtctttatgcgacaataataggtttaacttcactataaccaaccagagcaaaattataaaattcaccggtaaacacatagaagctgtaagatgagcata
5 sequences could not be aligned to this reference sequence:
Unaligned ( gi|25 ): TTTCAAGCATAATTTTGGATAAAATTAGCCTTATTCTAGATATGCGATTGATTGTAACGCCAAAAGTGTCACAAATATTAAATATATTTGGCATCATGAAACAACCGTTAGTAAACA
Unaligned ( gi|26 ): GATTCGGACAAACCTTTGGACAAAATCAACCTTGTTTGAGAAATGCGGTTGATTTTAACGTCAAAAACATTTATAATTTTTAACGTTTTTTGACGT
Unaligned ( gi|29 ): TTGATAACAATGTCGAAAATGTCACAATTCTTAATTGTGTTTGACAATTCATGATGCAACAGTTGCTTAACAAAAAGCATATTGTTTGCC
Unaligned ( gi|30 ): GATTGATTATAACAAAAAACATGACGCAATAATTAACGGAGTGTGACGTCATGAAGCAGGTAACCAAAATGTGTAACCTTTATCGTT
Unaligned ( gi|31 ): TTAAGTTCAGTCATAATTTTTGATAAAATCGACCTTGTTCGAGAGTATCGATTGATTTTCAATAAAAATATCAAAATTCAA
Alignments
lowQualScore : 111111111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 7777777777777777777 1111111111 111111111 2222 22222222222 1111 1111111111111 111111111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 0 5555 33 0 4 2222222222222222222 7777 0000000000 66 777 77 2 777 22 2 22 2 22 2 2 8 66 33 1 555555555 3 555 1 4444 3 2 2 66 2 44444444444 0 77 1 8888 6666 555 555 88 0 4 3 4 2 5 5 5 8 1 3 5555555555555 888888888888888888888888888888888888888888888888888888888888888888888888888888888888888 5 2 444 555 99 777777 66 444 2 2 888888 6 3
lowQualScore : . .... .. . . ................... .... .......... .. ... .. . ... .. . .. . .. . . . .. .. . ......... . ... . .... . . . .. . ........... . .. . .... .... ... ... .. . . . . . . . . . . . ............. ....................................................................................... . . ... ... .. ...... .. ... . . ...... . .
lowQualScore : 2 0000 22 1 7 8888888888888888888 4444 3333333333 99 888 00 4 444 99 1 99 1 99 4 4 2 99 77 0 999999999 1 222 5 3333 6 9 9 44 2 44444444444 5 00 5 0000 5555 000 444 55 4 5 2 5 8 7 7 7 6 0 8 7777777777777 222222222222222222222222222222222222222222222222222222222222222222222222222222222222222 7 9 000 000 44 777777 88 777 5 5 111111 7 1
consensus : AAGTGACGTAA----TGCCCA--TTTTT-CACTGTA-----TTT---------AAA----A----------ATTAAGCGAA--AAAA-AAGCATATAGGTCTAAAGGTTGTGGTAAATAATGGC-TAACGACCCATTATTCCCA---ACTCTACCTGCCA--CGAGTTCGAAATAAT-AATCTTCCAAAAT--A-TCATT-TTTCT-TATTTCACTGACCCAGT-GAAATAAGAAAAAC--GAAGGTTCCGTTAATTNCCGATATGAACCGAAGA--C-GGT-TTT-G-CCGATTTCCGTGAATCACGC--GNACACA-TT-AT-CACG--GCGTAACAAACGCTGGATACTTACTCGTTTCACGTCG--TTTT----TTC-ATTT---ACA--TACACTCTTTCACGAAGAAGACGGTCACTTNTATNGACTAAAAATACTTACCGATGCCATTTCTGTT-CC-T-TTT-TGCGTAGANTTGTTGACGAAAGNGTTGTTTTG-------------AAAATG-----------T------A------ACT-------------------T--------------TA-----GG--------------CATAAATTATGCAAATTAGATCGTGCAAGCGTTTACGGAACTGCCC-GAATCA-CGGCGAAGTC--TTTTGAAACCGAAACTGAAAT---G-NT------TTTTT--ATTATT---CGTATTTCTCTATTTCTAATACATTTTCTTCAA-GTTTTTATGCGACAATAACAGTTTTAA-CTGCACAGCAACCGACCAGAGCGAAATTAGCTC---TTATTATGACATTCACCGGTAAACACATAGAATGCCG-TAAGATGGGCATAACGCC
Reference ( family-1904 ) : AAGTGACGTAA----TGCCCA--TTTTT-CACTGTA-----TTT---------AAA----A----------ATTAAGCGAA--AAAA-AAGCATATAGGTCTAAAGGTTGTGGTAAATAATGGC-TAACGACCCATTATTCCCA---ACTCTACCTGCCA--CGAGTTCGAAATAAT-AATCTTCCAAAAT--A-TCATT-TTTCT-TATTTCACTGACCCAGT-GAAATAAGAAAAAC--GAAGGTTCCGTTAATTNCCGATATGAACCGAAGA--C-GGT-TTT-G-CCGATTTCCGTGAATCACGC--GNACACA-TT-AT-CACG--GCGTAACAAACGCTGGATACTTACTCGTTTCACGTCG--TTTT----TTC-ATTT---ACA--TACACTCTTTCACGAAGAAGACGGTCACTTNTATNGACTAAAAATACTTACCGATGCCATTTCTGTT-CC-T-TTT-TGCGTAGANTTGTTGACGAAAGNGTTGTTTTG-------------AAAATG-----------T------A------ACT-------------------T--------------TA-----GG--------------CATAAATTATGCAAATTAGATCGTGCAAGCGTTTACGGAACTGCCC-GAATCA-CGGCGAAGTC--TTTTGAAACCGAAACTGAAAT---G-NT------TTTTT--ATTATT---CGTATTTCTCTATTTCTAATACATTTTCTTCAA-GTTTTTATGCGACAATAACAGTTTTAA-CTGCACAGCAACCGACCAGAGCGAAATTAGCTC---TTATTATGACATTCACCGGTAAACACATAGAATGCCG-TAAGATGGGCATAACGCC
gi|1 : AAATGGTGTAA----TGCCCA--TTTAT-CACTGTA-----TTTTTTTC----AAA----A----------AATAAGCGGGGGAAAA-AAGCA----AGTCTAAAGGTTATGGTAAATAATGGC-TAACGACCCATTATTCACA---TCTCTACCTGCCA--CGAGTTCGAAAAAAT-AATTTTCCAAAAT--A-TCATT-TTTCT-TATTTCACTAGCTTAAT-CAAATAAGAATAAC--AAAGGTTCAGTTCGTTTCCGATGTGAACCGAAG---C-GGT-TTTAA-ACGATTTACGTGAATCACGT--GGACAAA-TA-AT-TATGT-ATGCAACAAACACTGGGTAGTCAATCGTTTCACGTTGCTTTTT----TTC-ATTT---ACA--TACACTCTTTCACGAAGCGGACGGTCACTTGTATAAACTAAAAATA-TTACCGATACAATTTATGTT-CC-T-TTCATGCGTAGATTTGTTGACGAAAGTATTGTTTAA-------------AAAAT--------------------------ACT-------------------T--------------TA-----GG--------------AACAAATTATGCAAATTCGATCGCGCAAGCGTTTACGGAACAGCCC-GAATCA-CGGCGAAATC--TTTTGAAACCGAAACTAAAAT---G-CT------TTTTC--ATTACT---CGTATTTCTCTATTTCTAATATAGTTTCCTCAA-AATTGTATGCATCAATAACAGTTTAAA-CTGCACAGCAACCGACCAGAGCGAAATTAGCTC---TTATTATGACATTCACCGGTAAACGCA-AGAATGTCG-TAAGATGGGCATTACGCC
gi|10 : AACAATCCACTATTTGTA---GCTCTTCCTGCCA--TGAGTTAGAAATAAT-AATCTTCCAAAAT--A-TTTTT-GTTCT-TATTT----GACCTAGT-GAAATA-GAAAAAC--A-------CATTAATTACCAATATGAACCAAAGA--T-GGTATTT-A-CTGATTTCCGTGAA----------------TT-AT------------------GTTGGATA--TA-TCATTTCATGTCG--TTTT----T-C-ATTT---ACA--CACACACTTTCACAAAGAAGAC----------------TAAAAATACTTAGCGATGCCATTTCTGTT-TCAT-TTT-TGCATAGAATTGTTGACGAAAAAACTGTTTTG-------------AAAATC-----------T------A------ACT-------------------T--------------TAATTTGGG--------------TATAAATTATACACATTTGATCATGCAAGCATTTATGGAACTGCCCCAAATCA-CGACGAGGGC--TTTTGAAACCTTAACCGAAAT---G-AT------GTTTT--ATCATT-----------TCTATTTCTAATACATTTTCTATAA-GTCTTTATGAGACAATAATAGGTTTAA-CTTCACTATAACCAACCAGAGCAAAATTA--TC-----------AAATTCACCGGTAAAC-CATAGAA-GCTG-TAAGATGAGCATAA
gi|11 : cAA----A----------ATTAAGC-AA--AATG-AAGTATACAGGTCTAAAGGTTGTGGTAA----TGGC-TAACAACCTATTATTGCCA---ACTCCACATGCCC--TGAGTTTGAAATAAT-AATTTTCCAAAAT--A-TTATT-TTTCT--ACTTATCTGACCCAGT-GAAATAAGAAGATT--GAAGGTTCCGTTAATTACCGATATGAATCGTAGA--T-GGG-TTT-A-CCAATTTCTGTGCATGTCGC---TACACA-TT-AT-CACA--GTGTAAC--ACGATGGAAACATACTCATTTCACATCG---TTT----TTC-ATTT---ACA--TACACTCTTTCACGAAGAAGACTG--ACTTTTATTAACTTAATATACTAACAGATGTCATTTCTGTT-CT-T-TTT-TGTGTAAAATTTTTGAAGAAAGAGTTGTTTTG-------------AAAATGTATCTTCAACTT------A------ACT-------------------T--------------TA-----GG--------------CTTAAATTTTGCAAATTAGACCATGCAAGTGt
gi|12 : tACACA-TT-AT-CACG--GCGTAA--AACGCTGGGTACTTACTCGTCACACATGG--TTTT----T-C-ATTT---ACA--TAC--TCTTTCACGAAGCAGACGGTCACCTGTATTGACTAAAAATACTTACCGATGCCATTTCTGTT-CT-TGTTT-TGCGTTGATTTGATGATGGAAGTGTTGTTTTC-------------AAATTG-----------TATCTTCA------ACT-------------------TCCGGAATATCGCTATA-----GG--------------AATAACTTATGCAAAGTAGATCGT----GCGTTTACGGAACTGCCC-GAATAA-CGGCGAAGTC--TTTTCAAACCGAAACTAAAAT---G--T------TTCTT--ATTATTACCCGTATTTCTCTATTTCTTATATATTTTCTTCAA-TTTT
gi|13 : gctAATGACGTTA----GGCTCA--CTTTT-CATTGTA-------------------A----A----------TTTAAGCGTT--AAAA---GCATATAGGTAAAAAGGTTGTGG-AAATAA-AACATAACTACCCGTTATTCCCA---ACTCTATATGCAA--CGAAGTTGAACTAAT-AATCTTCCAAAAT--A-ACATT-TTC----ATTTGACTGAATCAGT-GAAATCAGAAAAAT--GAATGTTCTGTTAATTACCGATATGAACTGAAAATTC-T-T-TTT-G-TCGATT-CCGTGAATCACGC---TACACA-TT-AA-AATG--GCGTAAT--ACTCTTTATATTCACTCATTTAACATCG--GTTT----TT--ATTTGTAATA--AATATTCTTTAACGAAGAAGACGGTTA
gi|14 : TGTT-CC-T-TTT-TGCATAGATTTGATGACAAAAG--TTGTTTTG-------------AAAATG-----------T------ATCTTCAACT-------------------TCCAGAATATTGTTTTG-----GG--------------CATAAATTATGAAAATTAGATCGTGCAAGCATTGACATAACTGCCC-AAATCA-CGTTGAA-TC--TTTTGAAAC------TGAAAT---G-AT------CTTTT--CTTATG---CATACTTCTCTATTTCCAATACATTTTGTACAA-GTTTT-ATGAGACAATAACAGCTTAAA-CTGCACAGCAACCGACCAGAGTGAAAATAGCTT---TTATTATGACATTCACTGGTAAACATATAGAATGCCG-CAAGATGAGCATaa
gi|15 : ATTGACTAAAA-TATTTACCGATGCCAGTTCTGTT-A----TTT-TGCATAGAATAATTGATGAAAGAGATGTTTTG-------------AAAATG-----------T------ATATCA-ACT-------------------TCCGGTACAATGCGTTG-----GG--------------CATAGATTTTGCAACTAATATCGTGCATGCGTTTACGAACCTGCTA-GAATCA-CAGCATCGTC--TTTTGAAACTGAAACT-AAATTAAG-GT------TT--------------CGTATTTCTCTATTCCTTATACATTGCCGTCAC-GTTTTTATGCGACAATTACAGTTTTAA-CTGCACAGCAACCGACAAAAGCGAAAGTAGCTC---TTATTATTACATTCATCttcaccac
gi|16 : AAATGGCGTAACTTTTGCC-A--TT----CACAATA-----TTT---------AAA----ATAACGATAAAATTAAGCGAA--ATAG---GCATATAGGTCTAAAGGATGTGGTACATAACGGC-TAACGACCCATTATTTCAT---ACTCTACCTGTCA--CGAGTTCGAACAAAT-AATCTTCC----T--T-TTATT-TTATT---TTTTAATGACCC--TAGAAATTAAAAAAAtgg
gi|17 : gggcatacttttgtatacataaaccttttttgattggtcgtaacgtcaaaaatgttacagttattaacggtttttgacgtcatgaagcaacggttcccaaatTGGTGTTA----TGCCCA--TATTT-CACTGTAAA---TTT---------GCAGCTGA----------ATTGAGCGGA--AAAGGAAGCATATAGGTCTAAAGGCTGTGGTAACTAATGGC-AAAATA-TCATTTTTCTT---------------------AGT---AAATATTCAATC------AATCAA-TCA----ATCT-TAGTTAACTGCCCCTGT--------CAAAAAT--GAAGGTTCTGTTAATTGCCGATATTAATCAAAGT--C-Gtc
gi|18 : tT------TTTTT--ATTATT---CGAATTTCTCTATTTTTA-TACATTTTCTTTAATATTTTTA--CGACAATAATAGTTTTAA-CTGCACAGAAACTGACCAGAGAAAAGTTACCTC---TTATTATGACATTCACCGGCAAACACGTAGAATGCTGTTAAGATGGGCGTAACGCaccatgggaacatcgttaggccatttccgtctatgtatggaatgataaccttaaaatacccatcttatatc
gi|19 : gttacatgatgtacacatattatgagatatactaaatttctactacagcactgttATATAGGTCTAAAGGATGTGACAAATAATGGC-TAATGACCCATTATTCCCA---ATTGTACTTGCCA--CGAGTTCGAAATAAT-AATCTTCCGAAAT--A-TCATA-TTTCT-TATTTCACTAGCCTAGT-CAAATAAAAAGAAC--GAATGTTCCGTTAATTTGCGATACGA----------------TTT-G-CCGATTTATGTGAATCACGT--GGATA-A-TTAAT-TACGC-ATGCAACAAAaactttaaataagttacaaatac
gi|2 : tAGTGACGTTA----TAACCAACTTTTT-CACTATA-------------------A----A----------ATGAAGCGAATAAAAA-AAGCATACATGCCTAAA--TT----------ATGGT-TAACGACCCATTTTTTCTA---ACTCTACCTGTCA--CAAGTTCAAAATAAC-AATCTTCCAAAAT--ATTTTTT-TTTCT-TATTTGGCTGACACAGC-GGAATAAGAAAAAC--GAAGGTTCCGTTAATTACCGATATGAACCGAAGA--G-AGT-TTT-GACCGATTTCCGTGAATCACGC---TACACA-TT-AT-CACG--GTGTATT--ACACTGAA----TACTCATTTCACATCG---TTA----TTG-ATTT---ACA--TAGACTCTTTCACGAAGAAGGTGGTCA-----A-AAAATAAAAATACTTACTGATGCCATTTCTGTT-CA-TATTG-TGCGCAGAATTGCTGACAAAAGTGTTGTTTTG-------------AAAATG-----------TACCTTCA------ACT-------------------T--------------CA-----GGAAAATTGCTTTTGACATAAATTATGCAAATGAGATCGTGCAGGCGAT--CG----T--------TCA-CGATGACGTA--TTTTGAGTCTGAAACTGATAC---G-GTATTATGTTTTT--ATTATT---CGTGTTTCTCTATTTCTAATACATTTTCTTCAA-GTTTGTATGCGACAATAATAATTTTAA-CTGTACAGCAACCAACCAGAGCGAAATTAGCTC---TTATTATGACATTCACCGGTTAACACGGACACTGCTG-TAAGATGGGTATAACGTCt
gi|20 : AAGTGGTGTAA----TGCCCA--TCTTT-CACTGTG-------------------A----A----------ACTGGGCGAA--AAAA-AAGCATAGAGGTCTAAAGGTTGTGATAAATAATGGC-TAACGACCCATTAATACCA---ACTGTACCTGCCA--CGAGTTCGAAATAAT-AATCTTTCAAAAT--A-TCATTGTTTCT-TATTTCACTGCCCTAGT-CAAACAAGAAAAAC--GAAGGTTCCGTTAATTTCCGATAT
gi|21 : AAATGGTGTAA----TGCCCA--TAAAT-CACTGTA-----TTTTTTAT----AAA----A----------ATTAAGCGAA--AAAA-AACCATATAGATCTAAAGGTTGTGGTAAATAATGGC-TAACGACCTATTATTCCCA---TCTCTACCTGCCA--CGAGTTCGATATAAT-AAGCTTCCAAAA---A-T-ATT-TATCTCTATT
gi|22 : aTGACGTTA----TGCCCA--TTTTC-C-CTGTA-------------------A----A----------ATTAAGCTAA--AACA-AAGCATACAGGTCTTAAGGTTGT---AAAAAATGGC-TAAAGACCTATTAATATTAGTTACTCTACCTGCCA--CGAGTTCGAAATAAT-AATCTTCCAAAAT--A-T
gi|23 : TGACGTTA----TGCCCA--TTTTC-C-CTGTA-------------------A----A----------ATTAAGCTAA--AACA-AAGCATACAGGTCTTAAGGTTGT---AAAAAATGGC-TAAAGACCTATTAATATTAGTTACTCTACCTGCCA--CGAGTTCGAAATAAT-AATCTTCCAAAAT--A-Tttgccgatttgttaacatgtttga
gi|24 : CTCTACTTCTAATACATTTTCTTTAA-GTTTTTGTGCAGCAATAACAGTTTTAA-CTGCACAGCAACCGACCAGAGTGAAATTAGCTC---TGGTTATGACATTCACCGGTAAACACATAGAATGCTG-TAAGATGGACATAATGttgccgatttgttaacatgtttg
gi|27 : TTTTAAACTGCACAGCAACCGACCAGAGCGAAATTAGCTC---TTATTATGACATTCACCGGTAAACATATAGAATGCCG-TAAGATGGGCATTACGCC
gi|28 : TATT---TGTATTTATCTATTTCTCATACATTTTCTTCAA-GTTTTTATGTGACAATAAAAGTTTTAA-CTGAACAGCATCTGACTAAAGCGA
gi|3 : AAGTGGTGTAA----TGCCCA--TTTAT-CACTGTA-----TTTTTTTTTATAAAA----A----------AATAAGTGAA--AAAA-A-GTATATAGGTCTAAAAATTGTGGTAAATAATGGC-TAACGACCCATTATTCCCA---TTTCTACCTGTCA--CGAGTTCGAAATAAT-AATCTTCCAAAAT--A-TCATT-TTTCT-TATTCCACTAGCCTAGT-CAAATAAGAAAAAC--GACGGTTCCGTTCATTTCAGATGTGACCCGAAGC--G-GGT-TTT-G-CCGATTTCCGTGAATCACAC--GGGCAAA-TA-AT-TATGCAG-GTAACAAACACTGTGTATTTACTCGTTTCACGTTT--TTTT----TTCCATTT---ACA--TACACTCTTTCACGAAGCAGACGGCCACTTATATAAACTAAAAATACT-ACCGATATAATTTCTGAT-CC-T-TTTATGCGTAGATTTGTTGACGAAAGTATTGTTCAG-------------AAAATG--------------------------CT-------------------T--------------TA-----GG--------------AATAAATTATGCAAATTAGATCATGC---------------------GAATAA-CGGCGAAGTC--TTTTGAAACCGAAACTAAAAT---G-CT------TTTTTTTATTACT---CGTATTTCTCTATTTCTAATATATTTTCTTCAA-AAGTGTATGCATCAATAACAGTTTAAA-CTGCACAGCAACGGACCAGAGCGAAATTAGCTC------TTATGACATTCACCACTAAACACA-AGACTGCCG-TAAGATGGGCATTACGCCtg
gi|32 : tgAGTGACGTTA----TGTCCA--TTTTT-CACTGT-------------------AA----A----------ATTAAGTG-T--TAAA-AAGCATATCTGTCTAAAGGTTGTG
gi|33 : GCAAGTGTTTACAGGACTGCCA-GAATCA-CAGCGATGTC--TTTTGAAACTGAATCTGAAAT---A-TT------TTTT
gi|34 : GTGATGTAA----TATCCA--TTTTT-GACTGTA-------------------A----A----------ATTAAGCAAA--AGAA-AAGCAAATTGGTCT
gi|35 : AGGTGGTGTAA----TGCCCA--TTTAT-CACTGTA-----ta
gi|4 : taAAGTGATGTAA----TGCCCA--TTTAC-TACTGTAATTTTTTT---------AAA----A----------ATTAAGTGAA--AAAA-A-GCATATTGGTCTAAAGGTTGTGGTAAATAATTGC-AAATGATCCATTATTCCCA---ACTCTAGCTGCAA--CGAATTCGAAATAAT-AATCTTCCAAAGT--A-TCATT-TTTCT-TATTCCACTAGTCTAGTCAAAATAAGAAAAAAAAGAAGGTTCCATTCATTTCCGATGTGAACAGAAG---C-GGTGTTT-G-CTGATTTCCATGAATAACGTTGGAACATAATT-ATGCAAA--G---AACAAACACTGGGTATTCAATCGTTTCACGGTG--TTTTATTTTTC-ATTT---ACA--TACACTCTTTCACGTAGTAGACGGTCACTTGTATAGACTAAAAATACT-GTCAATGACATATCTGTT-CC-T-TT---ACGTAGATTTGTTGACAAAAGTGTTGTTTTG-------------AAAAT--------------------------ACT-------------------T--------------TA-----GG--------------AATAAATTATGAAAATTAGATCGTGCAAGCGTTTACGGAACTGCTC-GAATCA-CGGCAAAGTC--CTTTGAAATCGAAACTAAAAT---G-CT------TTTTTT-ATTACT---CGTATTTGTCTATTTCTAATATATTTTCTTCAA-CTTTTTATGCAGCAATAACAATTTAAA-CTGCACAGCAGCCGACCAGAGCGAAATCAGCTT---TTATTATGACATTCACCAGTAAACACA-AGAA
gi|5 : AAGTGACGTAA----TGCCCA--TTTTTTCACTATA-------------------A----A----------ATTAAGCGGG--AAAA-G-GCGTATAGTTCTAAAGGTTATG-----------C-TAGCAACCCATTATTCCCA---ACTCCACCTGCTA--CGAGTTCGAAATAAT-AATCTTCTAAAAT--A-T--TT-TTTTT-TGT----CTGACCCAGT-GAAATAAGAAAAAC--GATGGTTCCGTTAACTGCCGATATGAATTGAAGA--CGGGT-TTT-G-T--ATTT-----AATCACGC---CACACA-TT-AT-CATG--GCGTAAT--GCACTGGATACTTACTCGTTTCTCATCA---TTT----TTC-ATTT---ACATTTACACTCTTTCACGATGAAGACGGTCACCTTTATTGACT-CAAATGCTCAATTATGCCATTTCTGTTCCC-T-TTT-TGCGTAGAATTGTTGACATAAGAGTTGTTTTG-------------ACAATG-----------TACCTTCA------ACTTCTGGAACATTGC------T--------------TG-----AG--------------CATAAATTGCGGAAGCTAGATCGTGCAAGCGTTTACAGAACTGACC-GAGTCA-CGACGTACT---TTTTGAAACCGATCCCGAAAC---G--T------TTTTT--AATATT---CGTATTTCTCTGTTCCTAATACATTTTTCTCAA-GTTTTTATGCGACAATAACAGTTTTAA-CTGCACAGGTACCGACCAGCGCGAAATTAGCTC---T---------------CGGTAAACACGTAGAATGTTG-AAAGATGGGCAGAACGTC
gi|6 : taAGTGACGTAA----TGCCCA--TTTTTTCACTATA-------------------A----A----------ATTAAGCGGG--AAAA-G-GCGTATAGTTCTAAAGGTTATG-----------C-TAGCAACCCATTATTCCCA---ACTCCACCTGCTA--CGAGTTCGAAATAAT-AATTTTCCAAAAT--A-TT-TT-TTTTT-TGT----CTGACCCAGC-GAAATAAGAAAAAC--GATGGTTCTGTTAACTGCCGATATGAATTGAAGA--CGGGT-TTT-G-T--ATTT-----AATCACGC---CACACA-TT-AT-CATG--GCGTAAT--GCACTGGATACTTACTCGTTTCTCATCA---TTT----TTC-ATTT---ACATTTACACTCTTTCACGATGAAGACGGTCACTTTTATTGACT-CAAATGCTCAATTATGCCATTTCTGTTCCC-T-TTT-TGCGTAGAATTGTTGACATAAGAGTTGTTTTG-------------ACAATG-----------T------A------ACTTCAACTTCTGGAACATTGCT--------------TG-----AG--------------TATAAATTGTGGAAGCTAGATCGTGCAAGCGTTTACGGAACTGACC-GAGTCA-CGACGTACT---TTTTGAAACCGATCCCGAAAC---G-TT------TTTTT--ATTATT---CGTATTTCTCTGTTTCTAATACATTTTTCTCAA-GTTTTTATGCGACAATAACAGTTTTAA-CTGCACAGGTACCGACCAGCGCGAAATTAGCTC---T---------------CGGTAAACACGTAGAATGTTG-TAAGATGGACAGAACG
gi|7 : AGGTCTTAAGTTTGTGTTAAATAATGGC-TAACGACCCATCATTTTCA---ACTAAACCGGTTATTCGAGTTCGAAATAAT-AATCTTCCAAAAT--A--CTTT-TTT-----TTTGACTGACCCAGT-GAATTAAGAAAAAC--GAAGGTTCCGTTA-TTGCCGATATGAACCGAAGA--C-G------------ATTTCCGTGAATCACGC---TGTACA-TT-GT-CACG--GCATAACA--CGCTGTATACATACTCATTTCATATC------------------------A--TACACTCTTTCATGATGAAGACGGTCACTTTTATTGACTTAAA-TACTTACCGATTTCAATTCTGTT-CT-T-TTT-TGTGTAGAAATGCTGAAGAAAGAGTTGTTTTGTTTTTCAACTTTCGAAACA-----------T------T------GCT-------------------T--------------TG-----GT--------------CATAAATTATGCAAATTAGGTCGCGTTAGCGTTTACGGAACTGCCC-GAACCAACGCCTAAGTTATTTTTGAAACCGAAACTGTAAT---G-AT------TTTTT--ATTACT---CGTATTTCTCTATTTCTAATATATTTTCTTCAA-GTTGTTATACGACAATAATAGTTTTAA-ATACACAGCAATCAACTAGAGCGAAATTAGCTCCTATTGTTATGACTTTCGCCGGCAAACAAATAAAATGCTG-TAAGATGGGCATAGCt
gi|8 : ctaattttcagtgtaaaattaATTCCCA---TCTCTACCTGC----------------AAT-AATCTTCCAAAGT--A-TCATT-TTTCT-TATTTCACTAGTCTAGA-CAAATAAG-AAAAC--GAAGGTTTCGTTCATTTCCGATGTGAACCGAA-A--CAGAT-TTT-G-CTGATTTCCGTGAATCACGT--GGGCAAA-TA-AT-TATGC-ATGCAACAAACACTGGGTATTCACTCGTTTTACGTT---TTTT----TTC-ATTT---ACA--TACACTCTTACACGAAGCAGACGATCATTTGTATAGACTTAAAATAC-TACCGATACAATGTGTGTT-CC-T-TTTATTCGTAGATTTGTTGACGAAAATTTTGTTTAG-------------AAAATG--------------------------CT-------------------T--------------TA-----GG--------------AATAAGTTATGCAAATTAGATCGTGCAAGCGCTTACGAAACAGCTC-GTATCA-CGACGAAGTC--TTTTGAAACCGAAACTAAAAT---GCTT------TTTTT--ATTACT---CGTATTTCTCTATTTCTAATATATTTTCTTCAA-AATTGTATGCATCAACAACAGTTTAAA-CTGCACAGCAACGGATCAGAGCGAAATTAGCTC---TTGTTATGACATTCACCGGTAAACGCA-AGAATGCCG-TTAGATGGACatc
gi|9 : AAGTGATGTAA----TACCCA--TTTTT-GACTGTA-----------------AAAT---A----------ATTA
gi|9 : taAAATAAT----TA-CAATCCACTATTTGTA---ACTCTTCCTGCCA--TGAGTTAGAAATAAT-AATCTTCCAAAAT--A-TTTTT-GTTCT-TATTT----GACCTAGT-GAAATAA-AAAAAC--A-------CATTAATTACCAATATGAACCAAAGA--T-GGTATTT-A-CTGATTTCCGTGAA----------------TT-AT------------------GCTGGATA--TA-TCATTTCATGTCC--TTTT----TT--ATTT---ACA--CACACT--TTCACAAAGAAGAC----------------TAAAAATACTTAGCGATGCCATTTCTGTT-TCAT-TTT-TGCATAGAATTGTTGACAAAAGAACTATTTTG-------------AAAATC-----------T------A------ACT-------------------T--------------TAATATGGG--------------TATAAATTATACAAATTTGATCATGCAAGCGTTTATGGAACTGCCCCAAATCA-CGGAGAGGGC--TTTTGAAACCGTAACCGAAAA---G-AT------GTTTT--ATTATT---T-------TCTATTTCTAATACATTTTCTATAA-GTCTTTATGCGACAATAATAGGTTTAA-CTTCACTATAACCAACCAGAGCAAA-------------ATTATAAAATTCACCGGTAAACACATAGAA-GCTG-TAAGATGAGCATAcaatccactatttgtaactcttcctgccatgagttagaaataataatcttccaaaatatttttgttcttatttgacctagtgaaataaaaaaacacattaattaccaatatgaaccaaagatggtatttactgatttccgtgaattatgctggatatatcatttcatgtccttttttatttacacacactttcacaaagaagactaaaaatacttagcgatgccatttctgtttcatttttgcatagaattgttgacaaaagaactattttgaaaatctaactttaatatgggtataaattatacaaatttgatcatgcaagcgtttatggaactgccccaaatcacggagagggcttttgaaaccgtaaccgaaaagatgttttattattttctatttctaatacattttctataagtctttatgcgacaataataggtttaacttcactataaccaaccagagcaaaattataaaattcaccggtaaacacatagaagctgtaagatgagcata
blockSeqs : CTTT AC T TTTTTTTTTATAAA GCTG TAACGATAAA TA GAA GT A GTT TT C CA T TT G C A AG AA A ATGGTA . ACC C TGGA C A A GC C CATGCAACAA CA C GT ATTT TCC GTA TT T T A T C A G A A A TTTTTCAACTTTC GTATCTTCAACTTCCGGAATATCGCTATAGGA C A TAT TAA CT ATTATG TT ACC T A CTATTG T T
blockSeqs : . . T TTTTTTATAA T . . AA GT . GTT . . . . TA . . G CA . A ATTCTT . CT C GG C . . C C CAGGTAACAA CT C GT . TC . TT G T T A C A A A A A . GTATCTTCAACTTCCAGAATATTGTTTTGGGC C . C . A . T . . . TTA T .
blockSeqs : . . . ATTTTTTTAA . . . AA GT . . . . . . CA . . T G . A ACGGGT . CC C GG C . . C T CATGCAACAA TT C GG . TG . . A T A T . . . . T T . GTACCTTCAACTTCAGGAAAATTGCTTTTGAC . . C . A . . . . . TTA T .
blockSeqs : . . . AATTTGC . . . AA AC . . . . . . TA . . A G . G ACGGGT . TC A GG C . . A C GCATAACA TT C TT . TC . . G A A T . . . . T A . GTATATCAACTTCCGGTACAATGCGTTGGGC . . C . G . . . . . TTA G .
blockSeqs : . . . TTTAA . . . AA AT . . . . . . CA . . C G . T ACAGAT . CC C T A . . T C GTGTAAC TT C GT . TC . . T A A T . . . . A T . GTACCTTCAACTTCTGGAACATTGCTTGAGC . . C . G . . . . . TTA T .
blockSeqs : . . . AA . . . AA GT . . . . . . CA . . G C . A ATGGTA . CC C T T . . C T GCGTAAA CT A CT . TC . . T A A C . . . . A T . GTAACTTCAACTTCTGGAACATTGCTTGAGT . . A . C . . . . . TGG T .
blockSeqs : . . . A . . . AA GT . . . . . . TT . . C G . T ATGGG . CT C T C . . T A GCGTAAT CT C G . TC . . T T A C . . . . T T . GTATCTTCAACTTAACTTTAGGC . . C . T . . . . . TTA T .
blockSeqs : . . . . . . . AA GT . . . . . . CA . . C C . T AGAGT . CT C C C . . C T GTGTATT CA C G . C . . G T T T . . . . T A . CTAACTTTAATTTGGGT . . C . C . . . . . TTA T .
blockSeqs : . . . . . . . AA TT . . . . . . CA . . C C . T CGGGT . CT C C C . . C T GCGTAAT TT C A . C . . . T T T . . . . A A . CTAACTTTAATATGGGT . . C . T . . . . . TTG T .
blockSeqs : . . . . . . . A G . . . . . . CA . . G G . G CGGTG . T C T A . . C C GCGTAAT . C A . T . . . A A T . . . . A A . ATTGCTTTGGTC . . C . A . . . . . T T .
blockSeqs : . . . . . . . A . . . . . . . CT . . C G . G ACG . T . . . . . T T GAACAA . . T . T . . . . . . . . . . A T . GCTTTAGGA . . C . A . . . . . T . .
blockSeqs : . . . . . . . G . . . . . . . CA . . . G . G . . . . . . . . . . . . . . . . . . . . . . . . . T A . ACTTTAGGA . . . . . . . . . . A . .
blockSeqs : . . . . . . . G . . . . . . . TT . . . C . T . . . . . . . . . . A . . GCTTTAGGA . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . A . . . G . A . . . . .
blockSeqs : . . . . . . . . . . . . . . . T . . . . . .
blockSeqs : . . . . . . . . . . . . . .
blockSeqs : . . . . .
blockSeqs : . . . . .
blockSeqCons : ******************* ** ACGGNT*** N*** GCGTAAC**** GT**
originalCons : AAGTGACGTAA----TGCCCA--TTTTT-CACTGTA-----TTT---------AAA----A----------ATTAAGCGAA--AAAA-AAGCATATAGGTCTAAAGGTTGTGGTAAATAATGGC-TAACGACCCATTATTCCCA---ACTCTACCTGCCA--CGAGTTCGAAATAAT-AATCTTCCAAAAT--A-TCATT-TTTCT-TATTTCACTGACCCAGT-GAAATAAGAAAAAC--GAAGGTTCCGTTAATTNCCGATATGAACCGAAGA--C-GGT-TTT-G-CCGATTTCCGTGAATCACGC--GNACACA-TT-AT-CACG--GCGTAACAAACGCTGGATACTTACTCGTTTCACGTCG--TTTT----TTC-ATTT---ACA--TACACTCTTTCACGAAGAAGACGGTCACTTNTATNGACTAAAAATACTTACCGATGCCATTTCTGTT-CC-T-TTT-TGCGTAGANTTGTTGACGAAAGNGTTGTTTTG-------------AAAATG-----------T------A------ACT-------------------T--------------TA-----GG--------------CATAAATTATGCAAATTAGATCGTGCAAGCGTTTACGGAACTGCCC-GAATCA-CGGCGAAGTC--TTTTGAAACCGAAACTGAAAT---G-NT------TTTTT--ATTATT---CGTATTTCTCTATTTCTAATACATTTTCTTCAA-GTTTTTATGCGACAATAACAGTTTTAA-CTGCACAGCAACCGACCAGAGCGAAATTAGCTC---TTATTATGACATTCACCGGTAAACACATAGAATGCCG-TAAGATGGGCATAACGCC
finalCons : AAGTGACGTAA----TGCCCA--TTTTT-CACTGTA-------------------A----A----------ATTAAGCGAA--AAAA-AAGCATATAGGTCTAAAGGTTGTGGTAAATAATGGC-TAACGACCCATTATTCCCA---ACTCTACCTGCCA--CGAGTTCGAAATAAT-AATCTTCCAAAAT--A-TCATT-TTTCT-TATTTCACTGACCCAGT-GAAATAAGAAAAAC--GAAGGTTCCGTTAATTNCCGATATGAACCGAAGACGGNT---TTT-G-CCGATTTCCGTGAATCACGCN---ACACA-TT-AT-CACGGCGTAAC----ACGCTGGATACTTACTCGTTTCACGTCGT--TTT----TTC-ATTT---ACA--TACACTCTTTCACGAAGAAGACGGTCACTTNTATNGACTAAAAATACTTACCGATGCCATTTCTGTT-CC-T-TTT-TGCGTAGANTTGTTGACGAAAGNGTTGTTTTG-------------AAAATG-----------T------A------ACT-------------------T--------------TA-----GG--------------CATAAATTATGCAAATTAGATCGTGCAAGCGTTTACGGAACTGCCC-GAATCA-CGGCGAAGTC--TTTTGAAACCGAAACTGAAAT---G-NT------TTTTT--ATTATT---CGTATTTCTCTATTTCTAATACATTTTCTTCAA-GTTTTTATGCGACAATAACAGTTTTAA-CTGCACAGCAACCGACCAGAGCGAAATTAGCTC---TTATTATGACATTCACCGGTAAACACATAGAATGCCG-TAAGATGGGCATAACGCC
5 sequences could not be aligned to this reference sequence:
Unaligned ( gi|25 ): TTTCAAGCATAATTTTGGATAAAATTAGCCTTATTCTAGATATGCGATTGATTGTAACGCCAAAAGTGTCACAAATATTAAATATATTTGGCATCATGAAACAACCGTTAGTAAACA
Unaligned ( gi|26 ): GATTCGGACAAACCTTTGGACAAAATCAACCTTGTTTGAGAAATGCGGTTGATTTTAACGTCAAAAACATTTATAATTTTTAACGTTTTTTGACGT
Unaligned ( gi|29 ): TTGATAACAATGTCGAAAATGTCACAATTCTTAATTGTGTTTGACAATTCATGATGCAACAGTTGCTTAACAAAAAGCATATTGTTTGCC
Unaligned ( gi|30 ): GATTGATTATAACAAAAAACATGACGCAATAATTAACGGAGTGTGACGTCATGAAGCAGGTAACCAAAATGTGTAACCTTTATCGTT
Unaligned ( gi|31 ): TTAAGTTCAGTCATAATTTTTGATAAAATCGACCTTGTTCGAGAGTATCGATTGATTTTCAATAAAAATATCAAAATTCAA
Alignments
lowQualScore : 111111111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 3333333333333333333333333333333333333 1111111 1111 111111 1111 1111111111111 111111111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 0 33 4 3333333333333333333333333333333333333 444444 999 1 1 2 777 22 2 22 2 22 2 2 8 66 33 1 5 77 555 1 1 7777777 3 2 2 66 2 4444 111111 0 77 1 8888 6666 555 555 88 0 4 3 4 2 5 5 5 8 1 3 5555555555555 888888888888888888888888888888888888888888888888888888888888888888888888888888888888888 5 2 444 555 99 777777 66 444 2 2 888888 6 3
lowQualScore : . .. . ..................................... ...... ... . . . ... .. . .. . .. . . . .. .. . . .. ... . . ....... . . . .. . .... ...... . .. . .... .... ... ... .. . . . . . . . . . . . ............. ....................................................................................... . . ... ... .. ...... .. ... . . ...... . .
lowQualScore : 8 44 7 1111111111111111111111111111111111111 999999 111 6 4 4 444 99 1 99 1 99 4 4 2 99 77 0 1 55 222 5 5 1111111 6 9 9 44 2 1111 999999 5 00 5 0000 5555 000 444 55 4 5 2 5 8 7 7 7 6 0 8 7777777777777 222222222222222222222222222222222222222222222222222222222222222222222222222222222222222 7 9 000 000 44 777777 88 777 5 5 111111 7 1
consensus : AAGTGACGTAATGCCCA--TTTTT-CACTGTA--------------A----------A-----------ATTAAGCGA--A--AAAA-AAGCATATAGGTCTAAAGGTTGTGGTAAATAATGGC-TAACGACCCATTATTCCCA---ACTCTACCTGCCA--CGAGTTCGAAATAAT-AATCTTCCAAAAT--A-TCATT-TTTCT-TATTTCACTGACCCAGT-GAAATAAGAAAAAC--GAAGGTTCCGTTAATTNCCGATATGAACCGAAGACGGNTTTTG-CCGATTTCCGTGAATCACGC-T---A-CACA-TT-AT-CACG--GCGTAAC--A--CGCTGGATACTTACTCGTTTCACGTCG--TTTT----TTC-ATTT---ACA--TACACTCTTTCACGAAGAAGACGGTCACTTNTATNGACTAAAAATACTTACCGATGCCATTTCTGTT-CC-T-TTT-TGCGTAGANTTGTTGACGAAAGNGTTGTTTTG-------------AAAATG-----------T------A------ACT-------------------T--------------TA-----GG--------------CATAAATTATGCAAATTAGATCGTGCAAGCGTTTACGGAACTGCCC-GAATCA-CGGCGAAGTC--TTTTGAAACCGAAACTGAAAT---G-NT------TTTTT--ATTATT---CGTATTTCTCTATTTCTAATACATTTTCTTCAA-GTTTTTATGCGACAATAACAGTTTTAA-CTGCACAGCAACCGACCAGAGCGAAATTAGCTC---TTATTATGACATTCACCGGTAAACACATAGAATGCCG-TAAGATGGGCATAACGCC
Reference ( family-1904 ) : AAGTGACGTAATGCCCA--TTTTT-CACTGTA--------------A----------A-----------ATTAAGCGA--A--AAAA-AAGCATATAGGTCTAAAGGTTGTGGTAAATAATGGC-TAACGACCCATTATTCCCA---ACTCTACCTGCCA--CGAGTTCGAAATAAT-AATCTTCCAAAAT--A-TCATT-TTTCT-TATTTCACTGACCCAGT-GAAATAAGAAAAAC--GAAGGTTCCGTTAATTNCCGATATGAACCGAAGACGGNTTTTG-CCGATTTCCGTGAATCACGC-N---A-CACA-TT-AT-CACG--GCGTAAC--A--CGCTGGATACTTACTCGTTTCACGTCG--TTTT----TTC-ATTT---ACA--TACACTCTTTCACGAAGAAGACGGTCACTTNTATNGACTAAAAATACTTACCGATGCCATTTCTGTT-CC-T-TTT-TGCGTAGANTTGTTGACGAAAGNGTTGTTTTG-------------AAAATG-----------T------A------ACT-------------------T--------------TA-----GG--------------CATAAATTATGCAAATTAGATCGTGCAAGCGTTTACGGAACTGCCC-GAATCA-CGGCGAAGTC--TTTTGAAACCGAAACTGAAAT---G-NT------TTTTT--ATTATT---CGTATTTCTCTATTTCTAATACATTTTCTTCAA-GTTTTTATGCGACAATAACAGTTTTAA-CTGCACAGCAACCGACCAGAGCGAAATTAGCTC---TTATTATGACATTCACCGGTAAACACATAGAATGCCG-TAAGATGGGCATAACGCC
gi|1 : AAATGGTGTAATGCCCA--TTTAT-CACTGTATTTTTTTCAA----A----------A-----------AATAAGCGG--GGGAAAA-AAGCA----AGTCTAAAGGTTATGGTAAATAATGGC-TAACGACCCATTATTCACA---TCTCTACCTGCCA--CGAGTTCGAAAAAAT-AATTTTCCAAAAT--A-TCATT-TTTCT-TATTTCACTAGCTTAAT-CAAATAAGAATAAC--AAAGGTTCAGTTCGTTTCCGATGTGAACCGAAG-CGGTTTTAA-ACGATTTACGTGAATCACGT-GG--A-CAAA-TA-AT-TATGT-ATGCAAC--AAACACTGGGTAGTCAATCGTTTCACGTTGCTTTTT----TTC-ATTT---ACA--TACACTCTTTCACGAAGCGGACGGTCACTTGTATAAACTAAAAATA-TTACCGATACAATTTATGTT-CC-T-TTCATGCGTAGATTTGTTGACGAAAGTATTGTTTAA-------------AAAAT--------------------------ACT-------------------T--------------TA-----GG--------------AACAAATTATGCAAATTCGATCGCGCAAGCGTTTACGGAACAGCCC-GAATCA-CGGCGAAATC--TTTTGAAACCGAAACTAAAAT---G-CT------TTTTC--ATTACT---CGTATTTCTCTATTTCTAATATAGTTTCCTCAA-AATTGTATGCATCAATAACAGTTTAAA-CTGCACAGCAACCGACCAGAGCGAAATTAGCTC---TTATTATGACATTCACCGGTAAACGCA-AGAATGTCG-TAAGATGGGCATTACGCC
gi|10 : AACAATCCACTATTTGTA---GCTCTTCCTGCCA--TGAGTTAGAAATAAT-AATCTTCCAAAAT--A-TTTTT-GTTCT-TATTT----GACCTAGT-GAAATA-GAAAAAC--A-------CATTAATTACCAATATGAACCAAAGATGGTATTTA-CTGATTTCCGTGAAT------------------T-AT--------------------GTTGGATA--TA-TCATTTCATGTCG--TTTT----T-C-ATTT---ACA--CACACACTTTCACAAAGAAGAC----------------TAAAAATACTTAGCGATGCCATTTCTGTT-TCAT-TTT-TGCATAGAATTGTTGACGAAAAAACTGTTTTG-------------AAAATC-----------T------A------ACT-------------------T--------------TAATTTGGG--------------TATAAATTATACACATTTGATCATGCAAGCATTTATGGAACTGCCCCAAATCA-CGACGAGGGC--TTTTGAAACCTTAACCGAAAT---G-AT------GTTTT--ATCATT-----------TCTATTTCTAATACATTTTCTATAA-GTCTTTATGAGACAATAATAGGTTTAA-CTTCACTATAACCAACCAGAGCAAAATTA--TC-----------AAATTCACCGGTAAAC-CATAGAA-GCTG-TAAGATGAGCATAA
gi|11 : cTA--------------A----------A-----------ATTAAGC-A--A--AATG-AAGTATACAGGTCTAAAGGTTGTGGTAA----TGGC-TAACAACCTATTATTGCCA---ACTCCACATGCCC--TGAGTTTGAAATAAT-AATTTTCCAAAAT--A-TTATT-TTTC--TACTTATCTGACCCAGT-GAAATAAGAAGATT--GAAGGTTCCGTTAATTACCGATATGAATCGTAGATGGG-TTTA-CCAATTTCTGTGCATGTCGC-T---A-CACA-TT-AT-CACA--GTGTAAC--A--CGATGGAAACATACTCATTTCACATCG---TTT----TTC-ATTT---ACA--TACACTCTTTCACGAAGAAGACTG--ACTTTTATTAACTTAATATACTAACAGATGTCATTTCTGTT-CT-T-TTT-TGTGTAAAATTTTTGAAGAAAGAGTTGTTTTG-------------AAAATGTATCTTCAACTT------A------ACT-------------------T--------------TA-----GG--------------CTTAAATTTTGCAAATTAGACCATGCAAGTGt
gi|12 : GC-T---A-CACA-TT-AT-CACG--GCGTAAA--A--CGCTGGGTACTTACTCGTCACACATGG--TTTT----T-C-ATTT---ACA--TAC--TCTTTCACGAAGCAGACGGTCACCTGTATTGACTAAAAATACTTACCGATGCCATTTCTGTT-CT-TGTTT-TGCGTTGATTTGATGATGGAAGTGTTGTTTTC-------------AAATTG-----------TATCTTCA------ACT-------------------TCCGGAATATCGCTATA-----GG--------------AATAACTTATGCAAAGTAGATCGT----GCGTTTACGGAACTGCCC-GAATAA-CGGCGAAGTC--TTTTCAAACCGAAACTAAAAT---G--T------TTCTT--ATTATTACCCGTATTTCTCTATTTCTTATATATTTTCTTCAA-TTTT
gi|13 : AATGACGTTAGGCTCA--CTTTT-CATTGTA--------------A----------A-----------TTTAAGCGT--T--AAAA---GCATATAGGTAAAAAGGTTGTGG-AAATAA-AACATAACTACCCGTTATTCCCA---ACTCTATATGCAA--CGAAGTTGAACTAAT-AATCTTCCAAAAT--A-ACATT-TTC----ATTTGACTGAATCAGT-GAAATCAGAAAAAT--GAATGTTCTGTTAATTACCGATATGAACTGAAAATTCTTTTTG-TCGA-TTCCGTGAATCACGC-T---A-CACA-TT-AA-AATG--GCGTAAT--A--CTCTTTATATTCACTCATTTAACATCG--GTTT----TT--ATTTGTAATA--AATATTCTTTAACGAAGAAGACGGTTA
gi|14 : TGTT-CC-T-TTT-TGCATAGATTTGATGACAAAAG--TTGTTTTG-------------AAAATG-----------T------ATCTTCAACT-------------------TCCAGAATATTGTTTTG-----GG--------------CATAAATTATGAAAATTAGATCGTGCAAGCATTGACATAACTGCCC-AAATCA-CGTTGAA-TC--TTTTGAAAC------TGAAAT---G-AT------CTTTT--CTTATG---CATACTTCTCTATTTCCAATACATTTTGTACAA-GTTTT-ATGAGACAATAACAGCTTAAA-CTGCACAGCAACCGACCAGAGTGAAAATAGCTT---TTATTATGACATTCACTGGTAAACATATAGAATGCCG-CAAGATGAGCATaa
gi|15 : ATTGACTAAAA-TATTTACCGATGCCAGTTCTGTT-A----TTT-TGCATAGAATAATTGATGAAAGAGATGTTTTG-------------AAAATG-----------T------ATATCA-ACT-------------------TCCGGTACAATGCGTTG-----GG--------------CATAGATTTTGCAACTAATATCGTGCATGCGTTTACGAACCTGCTA-GAATCA-CAGCATCGTC--TTTTGAAACTGAAACT-AAATTAAG-GT------TT--------------CGTATTTCTCTATTCCTTATACATTGCCGTCAC-GTTTTTATGCGACAATTACAGTTTTAA-CTGCACAGCAACCGACAAAAGCGAAAGTAGCTC---TTATTATTACATTCATCttcaccac
gi|16 : TA--------------A----------A-----------ATTAAGCGA--A--ATAG---GCATATAGGTCTAAAGGATGTGGTACATAACGGC-TAACGACCCATTATTTCAT---ACTCTACCTGTCA--CGAGTTCGAACAAAT-AATCTTCC----T--T-TTATT-TTATT---TTTTAATGACCC--TAGAAATTAAAAAAAtgg
gi|17 : gggcatacttttgtatacataaaccttttttgattggtcgtaacgtcaaaaatgttacagttattaacggtttttgacgtcatgaagcaacggttcccaaataaatggcgtaacttttgccattcacaatatttaaaataacgaTGGTGTTATGCCCA--TATTT-CACTGTA--------------A----------ATTTGCAGCTGAATTGAGCGG--A--AAAGGAAGCATATAGGTCTAAAGGCTGTGGTAACTAATGGC-AAAATA-TCATTTTTCTT---------------------AGT---AAATATTCAATC------AATCAA-TCA----ATCT-TAGTTAACTGCCCCTGT--------CAAAAAT--GAAGGTTCTGTTAATTGCCGATATTAATCAAAGTCGtc
gi|18 : tT------TTTTT--ATTATT---CGAATTTCTCTATTTTTA-TACATTTTCTTTAATATTTTTA--CGACAATAATAGTTTTAA-CTGCACAGAAACTGACCAGAGAAAAGTTACCTC---TTATTATGACATTCACCGGCAAACACGTAGAATGCTGTTAAGATGGGCGTAACGCaccatgggaacatcgttaggccatttccgtctatgtatggaatgataaccttaaaatacccatcttatatc
gi|19 : gttacatgatgtacacatattatgagatatactaaatttctactacagcactgttATATAGGTCTAAAGGATGTGACAAATAATGGC-TAATGACCCATTATTCCCA---ATTGTACTTGCCA--CGAGTTCGAAATAAT-AATCTTCCGAAAT--A-TCATA-TTTCT-TATTTCACTAGCCTAGT-CAAATAAAAAGAAC--GAATGTTCCGTTAATTTGCGATACGA-------------TTTG-CCGATTTATGTGAATCACGTGG---A-TA-A-TTAAT-TACGC-ATGCAAC--A--aactttaaataagttacaaatac
gi|2 : tAGTGACGTTATAACCAACTTTTT-CACTATA--------------A----------A-----------ATGAAGCGAATA--AAAA-AAGCATACATGCCTAAA--TT----------ATGGT-TAACGACCCATTTTTTCTA---ACTCTACCTGTCA--CAAGTTCAAAATAAC-AATCTTCCAAAAT--ATTTTTT-TTTCT-TATTTGGCTGACACAGC-GGAATAAGAAAAAC--GAAGGTTCCGTTAATTACCGATATGAACCGAAGA-GAGTTTTGACCGATTTCCGTGAATCACGC-T---A-CACA-TT-AT-CACG--GTGTATT--A--CACTGAA----TACTCATTTCACATCG---TTA----TTG-ATTT---ACA--TAGACTCTTTCACGAAGAAGGTGGTCA-----A-AAAATAAAAATACTTACTGATGCCATTTCTGTT-CA-TATTG-TGCGCAGAATTGCTGACAAAAGTGTTGTTTTG-------------AAAATG-----------TACCTTCA------ACT-------------------T--------------CA-----GGAAAATTGCTTTTGACATAAATTATGCAAATGAGATCGTGCAGGCGAT--CG----T--------TCA-CGATGACGTA--TTTTGAGTCTGAAACTGATAC---G-GTATTATGTTTTT--ATTATT---CGTGTTTCTCTATTTCTAATACATTTTCTTCAA-GTTTGTATGCGACAATAATAATTTTAA-CTGTACAGCAACCAACCAGAGCGAAATTAGCTC---TTATTATGACATTCACCGGTTAACACGGACACTGCTG-TAAGATGGGTATAACGTCaat
gi|20 : AAGTGGTGTAATGCCCA--TCTTT-CACTGTG--------------A----------A-----------ACTGGGCGA--A--AAAA-AAGCATAGAGGTCTAAAGGTTGTGATAAATAATGGC-TAACGACCCATTAATACCA---ACTGTACCTGCCA--CGAGTTCGAAATAAT-AATCTTTCAAAAT--A-TCATTGTTTCT-TATTTCACTGCCCTAGT-CAAACAAGAAAAAC--GAAGGTTCCGTTAATTTCCGATAT
gi|21 : AAATGGTGTAATGCCCA--TAAAT-CACTGTATTTTTTATAA----A----------A-----------ATTAAGCGA--A--AAAA-AACCATATAGATCTAAAGGTTGTGGTAAATAATGGC-TAACGACCTATTATTCCCA---TCTCTACCTGCCA--CGAGTTCGATATAAT-AAGCTTCCAAAA---A-T-ATT-TATCTCTATT
gi|22 : aTGACGTTATGCCCA--TTTTC-C-CTGTA--------------A----------A-----------ATTAAGCTA--A--AACA-AAGCATACAGGTCTTAAGGTT---GTAAAAAATGGC-TAAAGACCTATTAATATTAGTTACTCTACCTGCCA--CGAGTTCGAAATAAT-AATCTTCCAAAAT--A-T
gi|23 : TGACGTTATGCCCA--TTTTC-C-CTGTA--------------A----------A-----------ATTAAGCTA--A--AACA-AAGCATACAGGTCTTAAGGTT---GTAAAAAATGGC-TAAAGACCTATTAATATTAGTTACTCTACCTGCCA--CGAGTTCGAAATAAT-AATCTTCCAAAAT--A-Tttgccgatttgttaacatgtttga
gi|24 : CTCTACTTCTAATACATTTTCTTTAA-GTTTTTGTGCAGCAATAACAGTTTTAA-CTGCACAGCAACCGACCAGAGTGAAATTAGCTC---TGGTTATGACATTCACCGGTAAACACATAGAATGCTG-TAAGATGGACATAATGttgccgatttgttaacatgtttg
gi|27 : TTTTAAACTGCACAGCAACCGACCAGAGCGAAATTAGCTC---TTATTATGACATTCACCGGTAAACATATAGAATGCCG-TAAGATGGGCATTACGCC
gi|28 : TATT---TGTATTTATCTATTTCTCATACATTTTCTTCAA-GTTTTTATGTGACAATAAAAGTTTTAA-CTGAACAGCATCTGACTAAAGCGA
gi|3 : AAGTGGTGTAATGCCCA--TTTAT-CACTGTATTTTTTTTTATAAAA----------A-----------AATAAGTGA--A--AAAA-A-GTATATAGGTCTAAAAATTGTGGTAAATAATGGC-TAACGACCCATTATTCCCA---TTTCTACCTGTCA--CGAGTTCGAAATAAT-AATCTTCCAAAAT--A-TCATT-TTTCT-TATTCCACTAGCCTAGT-CAAATAAGAAAAAC--GACGGTTCCGTTCATTTCAGATGTGACCCGAAG-CGGGTTTTG-CCGATTTCCGTGAATCACAC-G---GGCAAA-TA-AT-TATGCAG-GTAAC--AAACACTGTGTATTTACTCGTTTCACGTTT--TTTT----TTCCATTT---ACA--TACACTCTTTCACGAAGCAGACGGCCACTTATATAAACTAAAAATACT-ACCGATATAATTTCTGAT-CC-T-TTTATGCGTAGATTTGTTGACGAAAGTATTGTTCAG-------------AAAATG--------------------------CT-------------------T--------------TA-----GG--------------AATAAATTATGCAAATTAGATCATGC---------------------GAATAA-CGGCGAAGTC--TTTTGAAACCGAAACTAAAAT---G-CT------TTTTTTTATTACT---CGTATTTCTCTATTTCTAATATATTTTCTTCAA-AAGTGTATGCATCAATAACAGTTTAAA-CTGCACAGCAACGGACCAGAGCGAAATTAGCTC------TTATGACATTCACCACTAAACACA-AGACTGCCG-TAAGATGGGCATTACGCCtg
gi|32 : tgAGTGACGTTATGTCCA--TTTTT-CACTGTA--------------A----------A-----------ATTAAGTG---T--TAAA-AAGCATATCTGTCTAAAGGTTGTG
gi|33 : GCAAGTGTTTACAGGACTGCCA-GAATCA-CAGCGATGTC--TTTTGAAACTGAATCTGAAAT---A-TT------TTTT
gi|34 : GTGATGTAATATCCA--TTTTT-GACTGTA--------------A----------A-----------ATTAAGCAA--A--AGAA-AAGCAAATTGGTCT
gi|35 : AGGTGGTGTAATGCCCA--TTTAT-CACTGTA--------------ta
gi|4 : taAAGTGATGTAATGCCCA--TTTAC-TACTGTA--------------ATTTTTTTAAAA-----------ATTAAGTGA--A--AAAA-A-GCATATTGGTCTAAAGGTTGTGGTAAATAATTGC-AAATGATCCATTATTCCCA---ACTCTAGCTGCAA--CGAATTCGAAATAAT-AATCTTCCAAAGT--A-TCATT-TTTCT-TATTCCACTAGTCTAGTCAAAATAAGAAAAAAAAGAAGGTTCCATTCATTTCCGATGTGAACAGAAG-CGGTGTTTG-CTGATTTCCATGAATAACGT-TGGAA-CATAATT-ATGCAAA--GAACAA---A--CACTGGGTATTCAATCGTTTCACGGTG--TTTTATTTTTC-ATTT---ACA--TACACTCTTTCACGTAGTAGACGGTCACTTGTATAGACTAAAAATACT-GTCAATGACATATCTGTT-CC-T-TT---ACGTAGATTTGTTGACAAAAGTGTTGTTTTG-------------AAAAT--------------------------ACT-------------------T--------------TA-----GG--------------AATAAATTATGAAAATTAGATCGTGCAAGCGTTTACGGAACTGCTC-GAATCA-CGGCAAAGTC--CTTTGAAATCGAAACTAAAAT---G-CT------TTTTTT-ATTACT---CGTATTTGTCTATTTCTAATATATTTTCTTCAA-CTTTTTATGCAGCAATAACAATTTAAA-CTGCACAGCAGCCGACCAGAGCGAAATCAGCTT---TTATTATGACATTCACCAGTAAACACA-AGAA
gi|5 : AAGTGACGTAATGCCCA--TTTTTTCACTATA--------------A----------A-----------ATTAAGCGG--G--AAAA-G-GCGTATAGTTCTAAAGGTTATG-----------C-TAGCAACCCATTATTCCCA---ACTCCACCTGCTA--CGAGTTCGAAATAAT-AATCTTCTAAAAT--A-T--TT-TTTTT-TGT----CTGACCCAGT-GAAATAAGAAAAAC--GATGGTTCCGTTAACTGCCGATATGAATTGAAGACGGGTTTTG-T--ATTT-----AATCACGC-C---A-CACA-TT-AT-CATG--GCGTAAT--G--CACTGGATACTTACTCGTTTCTCATCA---TTT----TTC-ATTT---ACATTTACACTCTTTCACGATGAAGACGGTCACCTTTATTGACT-CAAATGCTCAATTATGCCATTTCTGTTCCC-T-TTT-TGCGTAGAATTGTTGACATAAGAGTTGTTTTG-------------ACAATG-----------TACCTTCA------ACTTCTGGAACATTGC------T--------------TG-----AG--------------CATAAATTGCGGAAGCTAGATCGTGCAAGCGTTTACAGAACTGACC-GAGTCA-CGACGTACT---TTTTGAAACCGATCCCGAAAC---G--T------TTTTT--AATATT---CGTATTTCTCTGTTCCTAATACATTTTTCTCAA-GTTTTTATGCGACAATAACAGTTTTAA-CTGCACAGGTACCGACCAGCGCGAAATTAGCTC---T---------------CGGTAAACACGTAGAATGTTG-AAAGATGGGCAGAACGTC
gi|6 : taAGTGACGTAATGCCCA--TTTTTTCACTATA--------------A----------A-----------ATTAAGCGG--G--AAAA-G-GCGTATAGTTCTAAAGGTTATG-----------C-TAGCAACCCATTATTCCCA---ACTCCACCTGCTA--CGAGTTCGAAATAAT-AATTTTCCAAAAT--A-TT-TT-TTTTT-TGT----CTGACCCAGC-GAAATAAGAAAAAC--GATGGTTCTGTTAACTGCCGATATGAATTGAAGACGGGTTTTG-T--ATTT-----AATCACGC-C---A-CACA-TT-AT-CATG--GCGTAAT--G--CACTGGATACTTACTCGTTTCTCATCA---TTT----TTC-ATTT---ACATTTACACTCTTTCACGATGAAGACGGTCACTTTTATTGACT-CAAATGCTCAATTATGCCATTTCTGTTCCC-T-TTT-TGCGTAGAATTGTTGACATAAGAGTTGTTTTG-------------ACAATG-----------T------A------ACTTCAACTTCTGGAACATTGCT--------------TG-----AG--------------TATAAATTGTGGAAGCTAGATCGTGCAAGCGTTTACGGAACTGACC-GAGTCA-CGACGTACT---TTTTGAAACCGATCCCGAAAC---G-TT------TTTTT--ATTATT---CGTATTTCTCTGTTTCTAATACATTTTTCTCAA-GTTTTTATGCGACAATAACAGTTTTAA-CTGCACAGGTACCGACCAGCGCGAAATTAGCTC---T---------------CGGTAAACACGTAGAATGTTG-TAAGATGGACAGAACG
gi|7 : TTTT-CAGTGTA--------------A----------A-----------ATTAAG-----------------------GTCTTAAGTTTGTGTTAAATAATGGC-TAACGACCCATCATTTTCA---ACTAAACCGGTTATTCGAGTTCGAAATAAT-AATCTTCCAAAAT--A--CTTT-TTT-----TTTGACTGACCCAGT-GAATTAAGAAAAAC--GAAGGTTCCGTTA-TTGCCGATATGAACCGAAGACG-----------ATTTCCGTGAATCACGC-T---G-TACA-TT-GT-CACG--GCATAAC--A--CGCTGTATACATACTCATTTCATATC------------------------A--TACACTCTTTCATGATGAAGACGGTCACTTTTATTGACTTAAA-TACTTACCGATTTCAATTCTGTT-CT-T-TTT-TGTGTAGAAATGCTGAAGAAAGAGTTGTTTTGTTTTTCAACTTTCGAAACA-----------T------T------GCT-------------------T--------------TG-----GT--------------CATAAATTATGCAAATTAGGTCGCGTTAGCGTTTACGGAACTGCCC-GAACCAACGCCTAAGTTATTTTTGAAACCGAAACTGTAAT---G-AT------TTTTT--ATTACT---CGTATTTCTCTATTTCTAATATATTTTCTTCAA-GTTGTTATACGACAATAATAGTTTTAA-ATACACAGCAATCAACTAGAGCGAAATTAGCTCCTATTGTTATGACTTTCGCCGGCAAACAAATAAAATGCTG-TAAGATGGGCATAGCt
gi|8 : ctaaATTCCCA---TCTCTACCTGC----------------AAT-AATCTTCCAAAGT--A-TCATT-TTTCT-TATTTCACTAGTCTAGA-CAAATAAG-AAAAC--GAAGGTTTCGTTCATTTCCGATGTGAACCGAA-ACAGATTTTG-CTGATTTCCGTGAATCACGTGG---G-CAAA-TA-AT-TATGC-ATGCAACAAA--CACTGGGTATTCACTCGTTTTACGTT---TTTT----TTC-ATTT---ACA--TACACTCTTACACGAAGCAGACGATCATTTGTATAGACTTAAAATAC-TACCGATACAATGTGTGTT-CC-T-TTTATTCGTAGATTTGTTGACGAAAATTTTGTTTAG-------------AAAATG--------------------------CT-------------------T--------------TA-----GG--------------AATAAGTTATGCAAATTAGATCGTGCAAGCGCTTACGAAACAGCTC-GTATCA-CGACGAAGTC--TTTTGAAACCGAAACTAAAAT---GCTT------TTTTT--ATTACT---CGTATTTCTCTATTTCTAATATATTTTCTTCAA-AATTGTATGCATCAACAACAGTTTAAA-CTGCACAGCAACGGATCAGAGCGAAATTAGCTC---TTGTTATGACATTCACCGGTAAACGCA-AGAATGCCG-TTAGATGGACatc
gi|9 : AAGTGATGTAATACCCA--TTTTT-GACTGTA--------------A----------A-----------AT
gi|9 : taAAATAAT----TA-CAATCCACTATTTGTA---ACTCTTCCTGCCA--TGAGTTAGAAATAAT-AATCTTCCAAAAT--A-TTTTT-GTTCT-TATTT----GACCTAGT-GAAATAA-AAAAAC--A-------CATTAATTACCAATATGAACCAAAGATGGTATTTA-CTGATTTCCGTGAAT------------------T-AT--------------------GCTGGATA--TA-TCATTTCATGTCC--TTTT----TT--ATTT---ACA--CACACT--TTCACAAAGAAGAC----------------TAAAAATACTTAGCGATGCCATTTCTGTT-TCAT-TTT-TGCATAGAATTGTTGACAAAAGAACTATTTTG-------------AAAATC-----------T------A------ACT-------------------T--------------TAATATGGG--------------TATAAATTATACAAATTTGATCATGCAAGCGTTTATGGAACTGCCCCAAATCA-CGGAGAGGGC--TTTTGAAACCGTAACCGAAAA---G-AT------GTTTT--ATTATT---T-------TCTATTTCTAATACATTTTCTATAA-GTCTTTATGCGACAATAATAGGTTTAA-CTTCACTATAACCAACCAGAGCAAA-------------ATTATAAAATTCACCGGTAAACACATAGAA-GCTG-TAAGATGAGCATAaattacaatccactatttgtaactcttcctgccatgagttagaaataataatcttccaaaatatttttgttcttatttgacctagtgaaataaaaaaacacattaattaccaatatgaaccaaagatggtatttactgatttccgtgaattatgctggatatatcatttcatgtccttttttatttacacacactttcacaaagaagactaaaaatacttagcgatgccatttctgtttcatttttgcatagaattgttgacaaaagaactattttgaaaatctaactttaatatgggtataaattatacaaatttgatcatgcaagcgtttatggaactgccccaaatcacggagagggcttttgaaaccgtaaccgaaaagatgttttattattttctatttctaatacattttctataagtctttatgcgacaataataggtttaacttcactataaccaaccagagcaaaattataaaattcaccggtaaacacatagaagctgtaagatgagcata
5 sequences could not be aligned to this reference sequence:
Unaligned ( gi|25 ): TTTCAAGCATAATTTTGGATAAAATTAGCCTTATTCTAGATATGCGATTGATTGTAACGCCAAAAGTGTCACAAATATTAAATATATTTGGCATCATGAAACAACCGTTAGTAAACA
Unaligned ( gi|26 ): GATTCGGACAAACCTTTGGACAAAATCAACCTTGTTTGAGAAATGCGGTTGATTTTAACGTCAAAAACATTTATAATTTTTAACGTTTTTTGACGT
Unaligned ( gi|29 ): TTGATAACAATGTCGAAAATGTCACAATTCTTAATTGTGTTTGACAATTCATGATGCAACAGTTGCTTAACAAAAAGCATATTGTTTGCC
Unaligned ( gi|30 ): GATTGATTATAACAAAAAACATGACGCAATAATTAACGGAGTGTGACGTCATGAAGCAGGTAACCAAAATGTGTAACCTTTATCGTT
Unaligned ( gi|31 ): TTAAGTTCAGTCATAATTTTTGATAAAATCGACCTTGTTCGAGAGTATCGATTGATTTTCAATAAAAATATCAAAATTCAA