lowQualScore : 1 11 1111111 111 111111 1 11 22222222222 2222222 1 5555 11111 4444444444444444 11 1 11 1 222 1 5555555555 222 888888888888888 111 3333333333333 11111111 11111 11 11111111 1 111
lowQualScore : 3 1 7777 3 3 2 3 2 00 5555555 1 4 0 3 3 0 3 5 99999 0 3 444 3 3 55 7777 2 55 4 55 555555 55 2 4 0 2 44 8 99999999999 4 4 4 1 88 77 6666666 1 4 4 3 5 1 6 4 1111 6 2 5 3 66666 4444444444444444 77 1 7 3 55 5 6 3 1 1 33 1 33 5 0 5 6 8 6 111 4 5 5 2 0 9 9999999999 000 0 000000000000000 1 444 6 1111111111111 33333333 66666 3 55555 22 2 11 44444444 3 0 1 55 44 4 0 2 555 3 3 44 2 3 0 3 555 4 999
lowQualScore : . . .... . . . . . .. ....... . . . . . . . . ..... . . ... . . .. .... . .. . .. ...... .. . . . . .. . ........... . . . . .. .. ....... . . . . . . . . .... . . . . ..... ................ .. . . . .. . . . . . .. . .. . . . . . . ... . . . . . . .......... ... . ............... . ... . ............. ........ ..... . ..... .. . .. ........ . . . .. .. . . . ... . . .. . . . . ... . ...
lowQualScore : 6 9 1111 1 1 2 3 6 00 7777777 5 0 8 3 3 2 3 6 11111 1 6 666 6 6 00 7777 0 00 1 55 555555 55 5 0 7 5 00 0 66666666666 4 4 4 9 11 33 2222222 9 4 9 0 7 0 7 3 0000 0 5 2 5 77777 2222222222222222 00 0 5 5 33 2 3 9 7 7 66 4 44 7 7 0 0 6 9 111 9 7 7 0 7 6 7777777777 888 7 222222222222222 4 000 7 0000000000000 22222222 99999 0 88888 66 3 66 99999999 6 9 3 00 33 5 4 0 888 3 3 66 7 3 4 1 888 7 777
consensus : ACTGTCGTGATCGTGA-TACGGCATAGCTTTT----CCGTGTTCCGGC-ATAGAC-AACCAAGATGG-CGACAGCGATATCAAC--AAAA----AGGTACGTCTCA-TTTTCAATCTATATTTTGCTTTTACCA-A-CGAAGTAAT-ANTAATTTGTATGGCTG-----TTTACTGAA-GGG--AACTAGC-TATA-TTGTT--GATTGCATA----TGCGTACAGCTTTTGA--TTCCTTTGAACAAAACAGAA--A------ATCAGCGAT--AAATG-TGTCTCT-ATG-ATGGCGGT-AN--------T-TT-TTTG-ATCGAGAGAAC-CACCTAATTTTGGTCATT-TCCTCGATCCA-ACACGAT-TTNTTTT--CAAATATAAACCCGAACAAAATGAAAAGTAAATACCTT-----ACTG----------------TCTCCCTGTAAAGTACAGGCTGGATAAATTTACTNTATGTATTCGAAATTCGTTATTTTCTATTTT--GTGTAGCACACGGCA-TAGACACCGTGAAACGGCATGTACTTTCCGGAAAATAAGTCCCATATTT-GGATACGGCA-TAGAC-TTTATCCAAGAAAAGGATACGGTGCAGACACGTTTTT-TTT-T-TTATACA---TTTGGTTACCTGAAACTATCAATTC-G--AGTTT--CA-ACATTAC---TT-A-------NCAG-CATACA--CAATA-TATT-T-T-CTATTTTGTT--C--AAAGGAATCAAAAGNTGT------ACGCA-TATAAAATGA--GACGTACC-TTTTTGTTGATATCGCTGT---C-G-CCA--TCTTGGTT-GTCTA-TGCCGGAACACGG---AAAAGCTATGCCGTATCACGATCACGACAGTG
Reference ( gi|1 ) : ACTGTCGTGATCGTGA-TACGGCATACCTTTT----CCGTGTTCCGGC-ATAGAC-AACCAAAATGG-CGACAGCGATATCAAC--AAAC----AGGTATGTCTCA-TTTTCAATCTATATTTTGCTTTTACCA-A-CGAAGTAAT-ATTAATTTGTATGGCTG-----TTTACTGAA-GGC--AACTAGC-TATA-TTGTT--GATTGCATA----TGCGTACAGCTTTTGA--TTCCTTTGAATAAAATAGAA--A------ATCAGCGAT--ACATG-TGTCTCT-CTG-ATGGCGGT-AT--------T-TT-TTTG-ATCGAGGGAAC-CACCGGATGTGGGTCATT-TTCTCTATCCA-ACACGAT-TTTTTTTGTTAAATATAAACTCGAATAAAATGAAAAGTAAATACCTT-----ACTG----------------TCTCTCTGTAAAGTGCAGACTGGATAAGTTTACTCTTTGTATTCAAAATTCGTTATTTTCTATTTT--GTGTAGTACACGGCA-TAGACACCGTGAAAAGGCATGTACTTTCCGAAAAATAAGCCCAATATTT-ATATACGGCA-TAGAC-TTTATCAAAGAAAAGGAAACGGTGCAGACACGTTTTTCTTTGT-TTATACA---TTTGGTTACCTGAAACTATCAATTCAA--AGTTT--CA-GCATTAC---TT-A-------TCAG--ATACA--CAATA-TATT-T-T-CTATTTTATT--C--AAAGGAATCAAAAGCTGT------ACGCA-TATAAAATGA--GACGTACC-TTTTTGCTGATATCGCTGT---C-G-CCA--TCTAGGTT-GTCTA-TGCCGGAACACGG---AGAAGCTATGCCGGAACACGATCACGACAGTGCGTCA
gi|3 : ACTGTCGTGATCGTGA-TACGGCATAGCTTTT----CAGTGTTCCGGC-ATAGAC-AACCAAGATGG-CGACAGCGATATCAAC--AAAA----AAGTACGTCTCA-TTTTCAATCTAAATCT-GCTTTTACCA-A-CGAAGCAAT-ACTAATTTGTATGGTTG-----TTTACTGAA-GGG--AACTAGC-TATA-TTGTT--CATTGAATAATTATGCTTACATCTTTTGA--TTCCTTTGAACAAAACAGAA--A------ATCAGCGAT--AAATG-TGTCTCT-ATG-ATGGCGGT-TA--------T-TT-TTTG-ATCGAGAGAAC-CACCTAATTTTGGTCATT-TCCTCAATCCA-ACACGAT-ATGTTTT--CAAAAATAAACCCAAACAAAATGAAAA-TAAATACCTT-----ATTG----------------TCTCCCTGTAAAGTACAGGCAGGATAAATTTACTCTATGTATTCGAAATTTGTTATTTTCTATTTT--ATGTAGCACACGGCA-TAGACACCGTGAAACGGCATGTACTTTCCGGAAAATAAGTCCCATATTT-GGATACGGCA-TAGAC-TTTATCCAAGAAAAGGATACGGTGCAGACACGTTTAT-TTTGTAATATACA---TTTCGTTGCCTGAAACTATCAATCC-----------CATACATTACTCTTT-ATCCATGGTCAA--ATACA--CGA
gi|5 : cACTGTCGAGATCGTGA-TACGGCATAGCTTTT----CCGTGTTCCGGC-ATAGAC-AGCCAAGATGG-CGACAGCGATATCAAC--AAAA----AGGTACGTCCCA-TTTTCAATCTATACTTTGCTTTTACCA-A-CGAAGTAAT-ATTAATGTGTATGGCTG-----TTAACTGAA-GGA--AACTAGC-TATA-TTGTT--GATTTCATA----TGCATACAGCTTTTGG--TTCCTTTGAATAAAATAGAA--A------ATCAGCGAT--GCATG-TGTGTCT-ATG-ATGGTGGT-A---------T-TT-TTTG-ATCGAGAGAAC-CACATAATTTTGGTCGTT-TCCTCAATCCA-ACACGGT-TTCTTT--TCAAATATCAACCCAAACAAAATGAAAAGTAAATATCTT-----ACTG----------------TCGTCGTGTAAATTACAGACTGGATAAAATTACTATATGTATTCGGAATTCGTTAATTTCTATTTT--GTGTAGCACACGGCA-TAGACACCGTAAAACGACATGTACTTTCCTGAAAATAAGTCACATATTT-GGATACGGCA-TAGAA---AATCCAAGAAAATGATACGATGCAGACACGCTATTTTTT-C-TTAAACA---GTTGGTTACCTTAAACTATTAATT
gi|2 : tcACTGTCGTGATCGTGA-TACGGCATAGCTTTT----CCGTGTT----------A--AACCAAGATGG-CGACAGCGATGTCAAC--AAAA----AAGTACGTCTCA-TTTTCGATCTATATTTTGCTTTTACCA-A-CGAAGCAAT-ACTAATTTGTATGGCTG-----TTTACTAAA-GGG--AACTAGC-TATA-TTGTT--CATTGCATA----TGCGTACTATTTTTGA--TTCCTTTAAACAAAACAGAA--A------ATCAGCGAC--AAATG-TATCTCT-ATG-ATGGCGGT-AA--------A-TT-TTTG-ATCGAGAGAAC-CACCTAATTTTGGTCATT-TCTTCAATCCA-TCACGAT-TTCTTT--TCAAATATAAACCCGAATAAAACGAAAAGTAAATACCTT-----ACCG----------------TCTCCTTGTAAAGTACCGGCTAGATAAATTTACTATATGTATTCGTAATTCGTTATTTTCTATTTT--GCAGAGCGCACGGCG-TAGACACCGTGAAACGGCATGTTTTTTCCGGAAAATAAGTCCCATATTT-GGATATGGCA-TAGACATTAATCAA--GAAAGGATACGGTGCAGACACGT---------T-TTATAAATAGTTTGGTAACCTGAAACTATCAGTTTTA-----TA--CT-ACATTAC---TTAA-------AAAG--ATACACGCAATA-CA
gi|10 : cACTATCACGATCGTGA-TACGGCATAGCTTTT----CCATGTTCCGGC-ATAGAC-AACCAAAATGG-CAACACCAACA-CAAC--AAAA----ACGTACGTCTCATTTTTCAATCTATATTTTGCTTTTACCA-T-CATAGTAAT-AATAATTTGTATGACTG-----ATGACTGAA-GGG--AACTAAC-TATA-TTGTT--GATTCCATA----TGCGTACAGCTTTTTA--TTCCTTTGAACGAAACAGAA--A------ATCAGCGAT--AAATG-TG--TCT-ATG-ATGGCGGcagaacaattgcttaattaattgttgatcaatatcacggtttgatctagttttggaccagtggtagtattttattggaaaacagaataaaacaaatatgacattaacaataaatgcgtttgtaggtgtgctgtgcagggcagggactttacctg
gi|13 : tcACTATCGTGATCGTGA-TACGGCATAGCTTTT----CTGCGTTCCGGC-ATAGAC-AACCAAGTTGG-CGACAGCAATATCAAC--AAAA----ACGTACGTCTCA-TTTTTAATCTACATTTTGCTTTTACAA-A-CGAAATAAT-AATATTTTTTCTGTCTG-----T------------------------TA-TT-TT--GATTGCATG----TG-GTAC-GTTGTTTATCTTCCTTTAA
gi|11 : tACTGTCGTGATTGTGA-TACTGCATAGCTTTT----CCGTGTTCCGGCAATA-AC-AA
gi|15 : acACTGTCGTGATCTTGA-TACGGCATTGGTTTT----CCGTGTTCCGGC-ATAGAC-AACCAAGATGG-AAACAGCGATATCAAC--ACAA----AGGTACGTCTGA-TTTTCAATCTATATTTTGCTTTTACCA-A-CGAtgtgtatggctgtttactgaaagtagctagctatattgttgattgcatatgcgtacagcttttgattcctttgaacaaaatagaaaatcagcgataaatgtatctctatgatggtgttcttttttgaaaacgaccaaaatcaggtagttctctccatcaaca
gi|19 : cACTGTCGTGATCGTGA-TACGGCATAGCTTTT----CCGTGTTCCGGC-ATA
gi|14 : cACTGTTGCGATGGTTA-TACGCTAT-CGTTTTTTTCCCGTTTTCTGGT-GTAGAC-AATAAAATTGG-CGGCAATGATACAAAC--AAA
gi|18 : cACTGTCGTGATTG-GACTCCGGCACATCATTT----TTG-GAACCGGC-ACATACTATCCAAGATGGCCGACaatattattgtacattgcatgtgatgacagtttttgtttctacattata
gi|6 : TCATGATCGTGA-TACGGCATAGCTTTT----CCGTGTTCCGGC-ATAGAC-AACCAAGATGG-CGACAGCGATACCAAC--AAAC----GGGTACGTCTCA-TTTTCAATCTA-GTTTT-CTTTTACCA-A-CGAAATAAT-ACTAATTTGTATAGGTG-----TTTACTGAA-GGA--AACTAGT-TATA-TTGTT--GATTGCATA----TGCGTACATCTTTTGA--TTAGTTTGAACAAACCAGGA--A------ATCAGCGAT--AAATG-TGTCTCT-ATG-ACGGCGGT-AA--------T-AT-TTTG-ATCGAAAAAAAACACCTTATTTTGGTCATT-TCCTCAATCCA-ACACGAT-TTATTTT--CAAATATAAACCCAAACAAAATGAAAAGTAAATACCTT-----ACTG----------------TCGCCGTGTAAATTACAGGCTGGATAAAATTACTATATGTGTTCGGAATTCGTTATTTTCTCTTTT--GTGTAGCAGACGGCA-TAGACACCTTGAAACGACATGTACTTTCCGGAAAATAAGTCCAATATTT-GGATACGGTA-TAGAC-TTTATCAAAGAAAATGAAACAGTGCAGACACGTTTTTA------TTATACA---TTTGGTAACCTGAAACTATCgctat
gi|7 : tcatttCCTTC----CCTTG--CTGGT-ATAGAC-AACAAAGATAG-CGACCCCAAATTCAACAAAAACAAAAAAG-ATATCTCT-TTTCCGATC--TGTTTTACTTTTACCA-A-TATAGTA---ATTA---TGTATGGTTGTGTGATTTACCG-G-GAC--A--T-GC--ATA-TCCTTGCGATTTTATA----TGTG---AACTTGTGT--TGTCTCTGAAAAAAACAACATTAT-----ACCGGTGAT--AAATG-T-TCACGACTGCATGACGGC-AT--------T-CT-TTTA-A------------ATCGACTTT--GCTATT-TTTTTGATTTATAGA-GATATTTACCT----AATATAAACCTGTCTAAAATGGAA--TCAA-ACCTTTATAAACTGTTTAAAATAGAGCGTTTCTCCCTATAAAATTCAAGCTGAATAG------TCTGTATACTCGAAATTTA-TATATTCTATTTTA-ATG-GGT-CACGGTATTGGGTAC--------GGTATCTATTTTCGGGAAAATAAAACTGAAATTT-GGATCTGGTGCTTGGT-TCTGACTTAAAAAAGGAAAGGG
gi|8 : GTCCCGGT-ATAGAG-AATCTGAAGGG-CGGCAATGACA-------AAGC----A---ATGCGTCA-CTTCTAATCTGTGTTTTATTTTTTCCATATC--AGTAAT-AT-AATT-----GGTGA-----TTAACTAAAAGGA--AA--GGCATATAATTGT---GATTGCATA----TGCTAACATCCTTTGT--TTTCTCTTAATAAAATAAAA--AAAACCCAACAGCGATCAACAGG-------A-CTGCATGACGGTCAT--------TATT-GTTGAATCAATAGAAG-AACCAGACATTGGT-ATTGTCCTC
gi|17 : TAGAC-AATCAAGATGG-CGGCAATGACATCAATGAAAAC-----GGTATGTCTCA-TTTTCAATCTATAATTTACTTTTACCA-A-TTAAGTAATGATTaggctacagtgatctatgttttaacctgccttgaatagatagtttatgcactcctgcctccctggtgagtctaatccgagtagatgaatttattcgtgaatatactcttttattatt
gi|4 : ATATTTTACTTTTATCA-A-CAAGGAAAT-TATAATTTGTCTGGCTG-----TTTACT--A-GTCGGAACTAAT-TATA------------------------------CTTTTGG--TTTATTTGAACACATTAGAA--A------TTCTAAGAT--G-ATGATGT-------G-ATTGCAGT-AA--------T-TGATTTA-ATCGAGAGAAC-AACCTGACTTTGACTATT-TTCTAGATATA-TCAT-AT-ATTTTTT--TAAATATAAACCCGAAGAAAATGACAAATAAAAGCATT-----ACTG----------------TCTTCCAGTAAAGTATAGGCTTGATAAATATACTTTGTGTATTCGAAATCCGATA------GTTTT--GTGTTGTACATGGCA-TAGACACGGGGAAACGGCATACACTTTCCGGAAAATAAGTCACATATTT-GGATCCGGTA-TGGAC-TTTTTC-AAGAAAATGATACGGTGCATACACGTT--------T-TAATACAAT-TTTTGTTATCTTAAAATATAAGTT
gi|12 : TATTTTACTTTTACCA-A-CGAAGTTAT-AACGATGTGTATGGCTG-----TTTACTGAA-GGG--AACTAGC-TATA-TTGTT--GATTGCATA----TACGTACAGCTTTTGA--TTCCTTTGAACAAAATAGAA--A------ATCAGCGAT--AAATG-TGTCTTT-ATG-ATGGTGTT-ATGATGCCAGT-GT-GTTG-ATGGAGAGAAC-TACCTGATTTTGGTCGTT-TTCatttatgagaacgtttggataattaactggttgatcagttttacagtttgttctagtaatgttctggttttggaacgtcgaccatagtgatagcattatattggaaagcagaacgcgtttgtaagtgtactgtgctgttcatgtacagggca
gi|11 : GCAAT-AACAATGTGTATGGCTG-----TTTACTGAA-AGT--AGCTAGC-TATA-TTGTT--GATTGCATA----TGCGTACAGCTTTTGA--TTCCTTTGAACAAAATAGAA--A------ATCAGCGAT--AAATG-TATCTCT-ATG-ATGGTGTT--C--------T-TT-TTTG-A------AAAC-GACCAAAATCAGGTAGTT-CTCTCCAT-CA-ACA
gi|9 : acactgtcgtgattgtgatactgcatagcttttccgtgttccgTGTATTCAAAATTCGTTATTTTCTATTTTTTGTGTAGAACAAGGCA-TAGACACCGTGAAACAGCATGTACTTTCTGGAAAA-AATGCCAATATTTGATTT-CGGCA-TAGAC-TTTATTCAAGAAAAGGATACGATGCAGACATGTTTT-CTTTGT-TTATACA---TTTGGTTACCTCAAACTATCAATTC----AGTTTTATA-GCATTAC---TT-A-------TCAGATATACA--CAGAA-CATT-TGC-CTA--ATATT------AAGTAATTGATAGGTTT------A-ACA-TAT
gi|5 : TGAAATCAACAATATAGCTAGTTT--C---CTTCAG---TT-A-------ACAGCCATACA--CATTAATATT-------ACTTCGTTGGT--AAAAG---CAAA----GT------ATAGA-TTGAAAATGG--GACGTACC-TTTTTGTTGATATCGCTGT---C-G-CCA--TCTTGGCT-GTCTA-TGCCGGAACACGG---AAAAGCTATGCCGTATCACGATCTCGACAGTGttatctacctgtagtttttta
gi|10 : t--AGTTC--C---CTTCAG---TC-A-------TCAGTCATACA---AAT--TATTAT-TACTATGATGGT--A--AAAG----CAAAA--TAT------A-GAT-TGAAAAATGA--GACGTACG-TTTTTGTTG-TGTTGGTGT---T-G-CCA--TTTTGGTT-GTCTA-TGCCGGAACATGG---AAAAGCTATGCCGTATCACGATCGTGATAGTGtatgcatacagcttttggttcctttgaataaaatagaaaatcagcgatgcatgtgtgtctatgatggtggtattttttgatcgagagaaccacataattttggtcgtttcctcaatccaacacggtttcttttcaaatatcaacccaaacaaaatgaaaagtaaatatcttactgtcgtcgtgtaaattacagactggataaaattactatatgtattcggaattcgttaatttctattttgtgtagcacacggcatagacaccgtaaaacgacatgtactttcctgaaaataagtcacatatttggatacggcatagaaaatccaagaaaatgatacgatgcagacacgctattttttcttaaacagttggttaccttaaactattaatt
gi|13 : tT-A-------ACAG--ACAGA--AAAAA-TATT-A-T--TATTTCGTT--TGTAAAAG---CAAAA--TGT------A-GAT-TA-AAAATGA--GACGTACG-TTTTTGTTGATATTGCTGT---C-G-CCA--ACTTGGTT-GTCTA-TGCCGGAACGCAG---AAAAGCTATGCCGTATCACGATCACGATAGTaactatattgttgattccatatgcgtacagctttttattcctttgaacgaaacagaaaatcagcgataaatgtgtctatgatggcgg
gi|3 : tATT-T-T-CTGTTTTGTT--C--AAAGGAATCAAAAGATGT------AAGCA-TAttttgattgcatgtggtacgttgtttatcttcctttaa
gi|6 : cactgtcgtgatcgtgatacggcatagcttttcagtgttccggcatagacaaccaagatggcgacagcgatatcaacaaaaaagtacgtctcattttcaatctaaatctgcttttaccaacgaagcaatactaatttgtatggttgtttactgaagggaactagctatattgttcattgaataatATT-T-C-CTGGTTTGTT--C--AAACTAATCAAAAGATGT------ACGCA-TATGCAATcagcgataaatgtgtctctatgatggcggttattttttgatcgagagaaccacctaattttggtcatttcctcaatccaacacgatatgttttcaaaaataaacccaaacaaaatgaaaataaataccttattgtctccctgtaaagtacaggcaggataaatttactctatgtattcgaaatttgttattttctattttatgtagcacacggcatagacaccgtgaaacggcatgtactttccggaaaataagtcccatatttggatacggcatagactttatccaagaaaaggatacggtgcagacacgtttattttgtaatatacatttcgttgcctgaaactatcaatcccatacattactctttatccatggtcaaatacacga
gi|2 : tcattttcatgatcgtgatacggcatagcttttccgtgttccggcatagacaaccaagatggcgacagcgataccaacaaacgggtacgtctcattttcaatctagttttcttttaccaacgaaataatactaatttgtataggtgtttactgaaggaaactagttatattgttgATT-T-T-CTGTTTTGTT--T--AAAGGAATCAAAAATAGT------ACGCA-TATGCAATGA--cagcgataaatgtgtctctatgacggcggtaatattttgatcgaaaaaaaacaccttattttggtcatttcctcaatccaacacgatttattttcaaatataaacccaaacaaaatgaaaagtaaataccttactgtcgccgtgtaaattacaggctggataaaattactatatgtgttcggaattcgttattttctcttttgtgtagcagacggcatagacaccttgaaacgacatgtactttccggaaaataagtccaatatttggatacggtatagactttatcaaagaaaatgaaacagtgcagacacgtttttattatacatttggtaacctgaaactatc
gi|12 : cactgtcgtgatcgtgatacggcatagcttttccgtgttaaaccaagatggcgacagcgatgtcaacaaaaaagtacgtctcattttcgatctatattttgcttttaccaacgaagcaatactaatttgtatggctgtttactaaagggaactagctatattgtATT-T-T-CTATTTTGTT--C--AAAGGAATCAAAAGCTGT------ACGTA-TATGCAATcagcgacaaatgtatctctatgatggcggtaaatttttgatcgagagaaccacctaattttggtcatttcttcaatccatcacgatttcttttcaaatataaacccgaataaaacgaaaagtaaataccttaccgtctccttgtaaagtaccggctagataaatttactatatgtattcgtaattcgttattttctattttgcagagcgcacggcgtagacaccgtgaaacggcatgttttttccggaaaataagtcccatatttggatatggcatagacattaatcaagaaaggatacggtgcagacacgttttataaatagtttggtaacctgaaactatcagttttatactacattacttaaaaagatacacgcaatacacagaacaattgcttaattaattgttgatcaatatcacggtttgatctagttttggaccagtggtagtattttattggaaaacagaataaaacaaatatgacattaacaataaatgcgtttgtaggtgtgctgtgcagggcagggactttacctg
gi|11 : tattttacttttaccaacgaagttataacgatgtgtatggctgtttactgaagggaactagctatattgttgATT-T-T-CTATTTTGTT--C--AAAGGAATCAAAAGCTGT------ACGCA-TATGCAATCAACAATATAGC----TAGCTACTTTCA--GTAAACAG-CCA--TACACATT-GT-TATTGCCGGAACACGG---AAAAGCTATGCAGTATCACAATCACGACAGTGcagcgataaatgtgtctttatgatggtgttatgatgccagtgtgttgatggagagaactacctgattttggtcgttttc
gi|8 : aTT-T-T-TTATTTTATT--A--AGAGAAAACAAAGGATGT------TAGCA-TATGCAATcagcgataaatgtatctctatgatggtgttcttttttgaaaacgaccaaaatcaggtagttctctccatcaaca
gi|14 : gtcccggtatagagaatctgaagggcggcaatgacaaagcaatgcgtcacttctaatctgtgttttattttttccatatcagtaatataattggtgattaactaaaaggaaaggcatataattgtgGAAACAAAAACTGTCATCACATGCAATGTACAATAA------TA---TTTTTGTTTGTATCATTGC---C-G-CCAATTTTA--TT-GTCTA-CACCAGAAAACGGGAAAAAAACGATAGCGTATAACCATCGCAACAGTGaacccaacagcgatcaacaggactgcatgacggtcattattgttgaatcaatagaagaaccagacattggtattgtcctcaggctacagtgatctatgttttaacctgccttgaatagatagtttatgcactcctgcctccctggtgagtctaatccgagtagatgaatttattcgtgaatatactcttttattatt
gi|3 : AAAATGA--GACGTACT-TTTTTGTTGATATCGCTGT---C-G-CCA--TCTTGGTT-GTCTA-TGCCGGAACACTG---AAAAGCTATGCCGTATCACGATCACGACAGTGtacattata
gi|6 : AAAATGA--GACGTACC-CGTTTGTTGGTATCGCTGT---C-G-CCA--TCTTGGTT-GTCTA-TGCCGGAACACGG---AAAAGCTATGCCGTATCACGATCATGAAAATGcaatctaaatctgcttttaccaacgaagcaatactaatttgtatggttgtttactgaagggaactagctatattgttcattgaataattatgcttacatcttttgattcctttgaacaaaacagaaaatcagcgataaatgtgtctctatgatggcggttattttttgatcgagagaaccacctaattttggtcatttcctcaatccaacacgatatgttttcaaaaataaacccaaacaaaatgaaaataaataccttattgtctccctgtaaagtacaggcaggataaatttactctatgtattcgaaatttgttattttctattttatgtagcacacggcatagacaccgtgaaacggcatgtactttccggaaaataagtcccatatttggatacggcatagactttatccaagaaaaggatacggtgcagacacgtttattttgtaatatacatttcgttgcctgaaactatcaatcccatacattactctttatccatggtcaaatacacga
gi|2 : tAAAATGA--GACGTACT-TTTTTGTTGACATCGCTGT---C-G-CCA--TCTTGGTT--T----------AACACGG---AAAAGCTATGCCGTATCACGATCACGACAGTGcaatctagttttcttttaccaacgaaataatactaatttgtataggtgtttactgaaggaaactagttatattgttgattgcatatgcgtacatcttttgattagtttgaacaaaccaggaaatcagcgataaatgtgtctctatgacggcggtaatattttgatcgaaaaaaaacaccttattttggtcatttcctcaatccaacacgatttattttcaaatataaacccaaacaaaatgaaaagtaaataccttactgtcgccgtgtaaattacaggctggataaaattactatatgtgttcggaattcgttattttctcttttgtgtagcagacggcatagacaccttgaaacgacatgtactttccggaaaataagtccaatatttggatacggtatagactttatcaaagaaaatgaaacagtgcagacacgtttttattatacatttggtaacctgaaactatc
gi|15 : AAAATCA--GACGTACC-TTTGTGTTGATATCGCTGT---T-T-CCA--TCTTGGTT-GTCTA-TGCCGGAACACGG---AAAACCAATGCCGTATCAAGATCACGACAGTGcgatctatattttgcttttaccaacgaagcaatactaatttgtatggctgtttactaaagggaactagctatattgttcattgcatatgcgtactatttttgattcctttaaacaaaacagaaaatcagcgacaaatgtatctctatgatggcggtaaatttttgatcgagagaaccacctaattttggtcatttcttcaatccatcacgatttcttttcaaatataaacccgaataaaacgaaaagtaaataccttaccgtctccttgtaaagtaccggctagataaatttactatatgtattcgtaattcgttattttctattttgcagagcgcacggcgtagacaccgtgaaacggcatgttttttccggaaaataagtcccatatttggatatggcatagacattaatcaagaaaggatacggtgcagacacgttttataaatagtttggtaacctgaaactatcagttttatactacattacttaaaaagatacacgcaatacacagaacaattgcttaattaattgttgatcaatatcacggtttgatctagttttggaccagtggtagtattttattggaaaacagaataaaacaaatatgacattaacaataaatgcgtttgtaggtgtgctgtgcagggcagggactttacctg
gi|17 : AAAATGA--GACATACCGTTTTCATTGATGTCATTGC---C-G-CCA--TCTTGATT-GTCTA-caatctatattttgcttttaccaacga
gi|7 : -TTTTTGTTGAATTTGGGGT---C-G-CTA--TCTTTGTT-GTCTA-TACCAG--CAAGG----GAAGcaatctataatttacttttaccaattaagtaatgatt
gi|18 : cGT---C-GGCCA--TCTTGGATAGTATG-TGCCGGTTC-CAA---AAATGATGTGCCGGAGTCCAATCACGACAGTcaaaaaagatatctcttttccgatctgttttacttttaccaatatagtaattatgtatggttgtgtgatttaccgggacatgcatatccttgcgattttatatgtgaacttgtgttgtctctgaaaaaaacaacattataccggtgataaatgttcacgactgcatgacggcattcttttaaatcgactttgctatttttttgatttatagagatatttacctaatataaacctgtctaaaatggaatcaaacctttataaactgtttaaaatagagcgtttctccctataaaattcaagctgaatagtctgtatactcgaaatttatatattctattttaatgggtcacggtattgggtacggtatctattttcgggaaaataaaactgaaatttggatctggtgcttggttctgacttaaaaaaggaaaggg
gi|19 : TA-TGCCGGAACACGG---AAAAGCTATGCCGTATCACGATCACGACAGTGgctat
1 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|16 ): ATTGTACTTTTTTATCATAACGACGCAGAAGTGATCGATGAGATGCTGCTGTGATTGCGGCGTTTTTAAGCGAGAGAACTACCTGATTAGCTGTGTTTTTAATA
Alignments
lowQualScore : 1111111 111111 2222222222 11 11111 3333333333333333 1111 22222 111 111 555555555555 33 11 1 222222 1 66666666666666666 1 1111111 2222222 111
lowQualScore : 4 3 44 3 0 1111111 3 3 3 3 2 4 3 88888 3 44 3 3 44 7777 1 44 44 222222 6 6 5 3 3 2222222222 3 44 55 22 4 4 4 0 4 44 2 1 11 0 1 1 0 22222 3333333333333333 0000 0 1 0 0 66 0 2 1 0 44444 333 77 777 0 999999999999 1 33 88 1 3 7 0 6 1 888888 6 0 7 3 11111111111111111 3 3 4444444 4444444 6 777 0
lowQualScore : . . .. . . ....... . . . . . . . ..... . .. . . .. .... . .. .. ...... . . . . . .......... . .. .. .. . . . . . .. . . .. . . . . ..... ................ .... . . . . .. . . . . ..... ... .. ... . ............ . .. .. . . . . . . ...... . . . . ................. . . ....... ....... . ... .
lowQualScore : 4 3 66 3 5 8888888 6 6 1 1 1 0 3 33333 1 66 3 3 66 1111 0 66 66 999999 7 7 4 3 3 8888888888 6 00 66 55 1 0 4 1 4 77 4 0 99 2 1 4 4 55555 1111111111111111 6666 5 0 4 4 99 2 5 7 7 00000 999 99 999 7 888888888888 0 77 33 0 3 3 7 7 0 888888 5 0 0 7 33333333333333333 3 7 3333333 7777777 7 555 2
consensus : ACTGTCGTGATCGTGA-TACGGCATAGCTTTTCCGTGTTCCGGCATAGAC-AACC--AAGATGG-CGACAGCGATATCAACA-------AAAA-GGTACGTCTCA-TTTTCAATCTATATTTTGCTTTTACCA-A-CGAAGTAATANTAATT-TGTATGGCTG-----TTTACTGAAG--GGAACTAGC-TATA-TTGTT--GATTGCATA----TGCGTACAGCTTTTGA--TTCCTTTGAACAAAACAGAA--A------ATCAGCGATAA-ATG-TGTCTCTA-TG-ATGGCGGT--------AATTT-TTT-GATCGAGAGAAC-CACCTGATTTTGGTCATT-TCCTCGATCCA-ACA-CGATTTNTTT--TCAAATATAAACCCGAACAAAATGAAAAGTAAATACCTT-----ACTG----------------TCTCCCTGTAAAGTACAGGCTG----GATAAATTTACTNTATGTATTCGAAATTCGTTATTTTCTATTTT--GTGTAGCACACGGCATAGACACCGTGAAACGGCATGTACTTTCCGGAAAATAAGTCCNATATTTGGATACGGCATAGACTTTATCCAAGAAAAGGATACGGTGCAGACACGTT-TTTTTT--TT--TATACA---TTTGGTTACCTGAAACTATCAATTC--AGTTT--CA-GCATTACTTATCAG--ATACA--CAATACATTT-TCTATTTTATTCAAAGGAATCGAAAGCTGT------ACGCA-TATACAATNAG--ACGTA-CT------TTTC-GTTNATATCGCTGCCGCCAT---CTTTGTTGTCTACGCCGGAACACGG---AAAAGCTATGCCGTATCACGATCACGACAGTG
Reference ( family-1899 ) : ACTGTCGTGATCGTGA-TACGGCATAGCTTTTCCGTGTTCCGGCATAGAC-AACC--AAGATGG-CGACAGCGATATCAACA-------AAAA-GGTACGTCTCA-TTTTCAATCTATATTTTGCTTTTACCA-A-CGAAGTAATANTAATT-TGTATGGCTG-----TTTACTGAAG--GGAACTAGC-TATA-TTGTT--GATTGCATA----TGCGTACAGCTTTTGA--TTCCTTTGAACAAAACAGAA--A------ATCAGCGATAA-ATG-TGTCTCTA-TG-ATGGCGGT--------ANTTT-TTT-GATCGAGAGAAC-CACCTAATTTTGGTCATT-TCCTCGATCCA-ACA-CGATTTNTTT--TCAAATATAAACCCGAACAAAATGAAAAGTAAATACCTT-----ACTG----------------TCTCCCTGTAAAGTACAGGCTG----GATAAATTTACTNTATGTATTCGAAATTCGTTATTTTCTATTTT--GTGTAGCACACGGCATAGACACCGTGAAACGGCATGTACTTTCCGGAAAATAAGTCCCATATTTGGATACGGCATAGACTTTATCCAAGAAAAGGATACGGTGCAGACACGTT-TTTTTT--TT--TATACA---TTTGGTTACCTGAAACTATCAATTC-GAGTTT--CA-ACATTACTTANCAG-CATACA--CAATATATTT-TCTATTTTGTTCAAAGGAATCAAAAGNTGT------ACGCA-TATAAAATGAG--ACGTACCT------TTTT-GTTGATATCGCTGTCGCCAT---CTTGGTTGTCTATGCCGGAACACGG---AAAAGCTATGCCGTATCACGATCACGACAGTG
gi|1 : ACTGTCGTGATCGTGA-TACGGCATACCTTTTCCGTGTTCCGGCATAGAC-AACC--AAAATGG-CGACAGCGATATCAACA-------AACA-GGTATGTCTCA-TTTTCAATCTATATTTTGCTTTTACCA-A-CGAAGTAATATTAATT-TGTATGGCTG-----TTTACTGAAG--GCAACTAGC-TATA-TTGTT--GATTGCATA----TGCGTACAGCTTTTGA--TTCCTTTGAATAAAATAGAA--A------ATCAGCGATAC-ATG-TGTCTCTC-TG-ATGGCGGT--------ATTTT-TTT-GATCGAGGGAAC-CACCGGATGTGGGTCATT-TTCTCTATCCA-ACA-CGATTTTTTTTGTTAAATATAAACTCGAATAAAATGAAAAGTAAATACCTT-----ACTG----------------TCTCTCTGTAAAGTGCAGACTG----GATAAGTTTACTCTTTGTATTCAAAATTCGTTATTTTCTATTTT--GTGTAGTACACGGCATAGACACCGTGAAAAGGCATGTACTTTCCGAAAAATAAGCCCAATATTTATATACGGCATAGACTTTATCAAAGAAAAGGAAACGGTGCAGACACGTT-TTTCTTTGTT--TATACA---TTTGGTTACCTGAAACTATCAATTCAAAGTTT--CA-GCATTACTTATCAG--ATACA--CAATATATTT-TCTATTTTATTCAAAGGAATCAAAAGCTGT------ACGCA-TATAAAATGAG--ACGTACCT------TTTT-GCTGATATCGCTGTCGCCAT---CTAGGTTGTCTATGCCGGAACACGG---AGAAGCTATGCCGGAACACGATCACGACAGTG
gi|10 : ACTATCACGATCGTGA-TACGGCATAGCTTTTCCATGTTCCGGCATAGAC-AACC--AAAATGG-CAACACCAACA-CAACA-------AAAA-CGTACGTCTCATTTTTCAATCTATATTTTGCTTTTACCA-T-CATAGTAATAATAATT-TGTATGACTG-----ATGACTGAAG--GGAACTAAC-TATA-TTGTT--GATTCCATA----TGCGTACAGCTTTTTA--TTCCTTTGAACGAAACAGAA--A------ATCAGCGATAA-ATG-TG--TCTA-TG-ATGGCGGcgtca
gi|11 : tcATTT-TCTATTTTGTTCAAAGGAATCAAAAGCTGT------ACGCA-TATGCAATCAACAATATAGCTAGCTACTTTCAGTAAACA--------GCCATACACATTGTTAT---TGCCGGAACACGG---AAAAGCTATGCAGTATCACAATCACGACAGTG
gi|11 : aGCAATAACAATG-TGTATGGCTG-----TTTACTGAAA--GTAGCTAGC-TATA-TTGTT--GATTGCATA----TGCGTACAGCTTTTGA--TTCCTTTGAACAAAATAGAA--A------ATCAGCGATAA-ATG-TATCTCTA-TG-ATGGTGTT---------CTTT-TTT-------GAAAAC-GACCAAAATCAGGTAGTT-CTCTCCAT-CA-ACA-cagcgataaatgtatctctatgatggtgttcttttttgaaaacgaccaaaatcaggtagttctctccatcaaca
gi|12 : acactgtcgtgattgtgatactgcatagcttttccgtgttccgTATTTTACTTTTACCA-A-CGAAGTTATAACGATG-TGTATGGCTG-----TTTACTGAAG--GGAACTAGC-TATA-TTGTT--GATTGCATA----TACGTACAGCTTTTGA--TTCCTTTGAACAAAATAGAA--A------ATCAGCGATAA-ATG-TGTCTTTA-TG-ATGGTGTTATGATGCCAGTGT-GTT-GATGGAGAGAAC-TACCTGATTTTGGTCGTT-TTC
gi|13 : ACTATCGTGATCGTGA-TACGGCATAGCTTTTCTGCGTTCCGGCATAGAC-AACC--AAGTTGG-CGACAGCAATATCAACA-------AAAA-CGTACGTCTCA-TTTTTAATCTACATTTTGCTTTTACAA-A-CGAAATAATAATATTT-TTTCTGTCTG-----T-----------------------TA-TT-TT--GATTGCATG----TG-GTAC-GTTGTTTATCTTCCTTTAA
gi|14 : tGAAACAAAAACTGTCATCACATGCAATGTACAATAA------TA--T------TTTT-GTTTGTATCATTGCCGCCAA---TTTTATTGTCTACACCAGAAAACGGGAAAAAAACGATAGCGTATAACCATCGCAACAGTG
gi|15 : ACTGTCGTGATCTTGA-TACGGCATTGGTTTTCCGTGTTCCGGCATAGAC-AACC--AAGATGG-AAACAGCGATATCAACA-------CAAA-GGTACGTCTGA-TTTTCAATCTATATTTTGCTTTTACCA-A-CGAtacattata
gi|16 : cAACGACGCAGAA--G-------TGATCGATGAGATGCTG---CTG-TG-ATTGCGGC--------G--TT-TTT-AAGCGAGAGAAC-TACCTGATT
gi|17 : attgtacttttttatcatTAGAC-AATC--AAGATGG-CGGCAATGACATCAATG-------AAAACGGTATGTCTCA-TTTTCAATCTATAATTTACTTTTACCA-A-TTAAGTAATGATagctgtgtttttaata
gi|18 : ACTGTCGTGATTG-GACTCCGGCACATCATTTTTG-GAACCGGCACATACTATCC--AAGATGGCCGACt
gi|19 : TATGCCGGAACACGG---AAAAGCTATGCCGTATCACGATCACGACAGTGgctat
gi|2 : ACTGTCGTGATCGTGA-TACGGCATAGCTTTTCCGTGTT---------A--AACC--AAGATGG-CGACAGCGATGTCAACA-------AAAA-AGTACGTCTCA-TTTTCGATCTATATTTTGCTTTTACCA-A-CGAAGCAATACTAATT-TGTATGGCTG-----TTTACTAAAG--GGAACTAGC-TATA-TTGTT--CATTGCATA----TGCGTACTATTTTTGA--TTCCTTTAAACAAAACAGAA--A------ATCAGCGACAA-ATG-TATCTCTA-TG-ATGGCGGT--------AAATT-TTT-GATCGAGAGAAC-CACCTAATTTTGGTCATT-TCTTCAATCCA-TCA-CGATTTCTTT--TCAAATATAAACCCGAATAAAACGAAAAGTAAATACCTT-----ACCG----------------TCTCCTTGTAAAGTACCGGCTA----GATAAATTTACTATATGTATTCGTAATTCGTTATTTTCTATTTT--GCAGAGCGCACGGCGTAGACACCGTGAAACGGCATGTTTTTTCCGGAAAATAAGTCCCATATTTGGATATGGCATAGACATTAATCAAG-AAAGGATACGGTGCAGACACG--------T--TT--TATAAATAGTTTGGTAACCTGAAACTATCAGTTT-TA--TA--CT-ACATTACTTAAAAA-GATACACGCAATACA
gi|3 : cACTGTCGTGATCGTGA-TACGGCATAGCTTTTCAGTGTTCCGGCATAGAC-AACC--AAGATGG-CGACAGCGATATCAACA-------AAAA-AGTACGTCTCA-TTTTCAATCTAAATCT-GCTTTTACCA-A-CGAAGCAATACTAATT-TGTATGGTTG-----TTTACTGAAG--GGAACTAGC-TATA-TTGTT--CATTGAATAATTATGCTTACATCTTTTGA--TTCCTTTGAACAAAACAGAA--A------ATCAGCGATAA-ATG-TGTCTCTA-TG-ATGGCGGT--------TATTT-TTT-GATCGAGAGAAC-CACCTAATTTTGGTCATT-TCCTCAATCCA-ACA-CGATATGTTT--TCAAAAATAAACCCAAACAAAATGAAAA-TAAATACCTT-----ATTG----------------TCTCCCTGTAAAGTACAGGCAG----GATAAATTTACTCTATGTATTCGAAATTTGTTATTTTCTATTTT--ATGTAGCACACGGCATAGACACCGTGAAACGGCATGTACTTTCCGGAAAATAAGTCCCATATTTGGATACGGCATAGACTTTATCCAAGAAAAGGATACGGTGCAGACACGTT-TATTTT--GTAATATACA---TTTCGTTGCCTGAAACTATCAATCC---------CATACATTACTcagaacaattgcttaattaattgttgatcaatatcacggtttgatctagttttggaccagtggtagtattttattggaaaacagaataaaacaaatatgacattaacaataaatgcgtttgtaggtgtgctgtgcagggcagggactttacctg
gi|4 : cATATTTTACTTTTATCA-A-CAAGGAAATTATAATT-TGTCTGGCTG-----TTTACT--AGTCGGAACTAAT-TATA------------------------------CTTTTGG--TTTATTTGAACACATTAGAA--A------TTC-----TAAGATGATG---ATG-TG-ATTGCAGT--------AATTGATTT-AATCGAGAGAAC-AACCTGACTTTGACTATT-TTCTAGATATA-TCA-T-ATATTTTT--TTAAATATAAACCCGAAGAAAATGACAAATAAAAGCATT-----ACTG----------------TCTTCCAGTAAAGTATAGGCTT----GATAAATATACTTTGTGTATTCGAAATCCGATA------GTTTT--GTGTTGTACATGGCATAGACACGGGGAAACGGCATACACTTTCCGGAAAATAAGTCACATATTTGGATCCGGTATGGACTTT-TTCAAGAAAATGATACGGTGCATACACG-------TT--TT--AATACAAT-TTTTGTTATCTTAAAATATAAGTTctttatccatggtcaaatacacga
gi|5 : ACTGTCGAGATCGTGA-TACGGCATAGCTTTTCCGTGTTCCGGCATAGAC-AGCC--AAGATGG-CGACAGCGATATCAACA-------AAAA-GGTACGTCCCA-TTTTCAATCTATACTTTGCTTTTACCA-A-CGAAGTAATATTAATG-TGTATGGCTG-----TTAACTGAAG--GAAACTAGC-TATA-TTGTT--GATTTCATA----TGCATACAGCTTTTGG--TTCCTTTGAATAAAATAGAA--A------ATCAGCGATGC-ATG-TGTGTCTA-TG-ATGGTGGT--------A-TTT-TTT-GATCGAGAGAAC-CACATAATTTTGGTCGTT-TCCTCAATCCA-ACA-CGGTTTCTTT--TCAAATATCAACCCAAACAAAATGAAAAGTAAATATCTT-----ACTG----------------TCGTCGTGTAAATTACAGACTG----GATAAAATTACTATATGTATTCGGAATTCGTTAATTTCTATTTT--GTGTAGCACACGGCATAGACACCGTAAAACGACATGTACTTTCCTGAAAATAAGTCACATATTTGGATACGGCATAGAA--AATCCAAGAAAATGATACGATGCAGACACGCTATTTTTT--CT--TAAACA---GTTGGTTACCTTAAACTATTAATTatttatgagaacgtttggataattaactggttgatcagttttacagtttgttctagtaatgttctggttttggaacgtcgaccatagtgatagcattatattggaaagcagaacgcgtttgtaagtgtactgtgctgttcatgtacagggca
gi|6 : tcTCATGATCGTGA-TACGGCATAGCTTTTCCGTGTTCCGGCATAGAC-AACC--AAGATGG-CGACAGCGATACCAACA-------AACG-GGTACGTCTCA-TTTTCAATCTA-GTTTT-CTTTTACCA-A-CGAAATAATACTAATT-TGTATAGGTG-----TTTACTGAAG--GAAACTAGT-TATA-TTGTT--GATTGCATA----TGCGTACATCTTTTGA--TTAGTTTGAACAAACCAGGA--A------ATCAGCGATAA-ATG-TGTCTCTA-TG-ACGGCGGT--------AATAT-TTT-GATCGAAAAAAAACACCTTATTTTGGTCATT-TCCTCAATCCA-ACA-CGATTTATTT--TCAAATATAAACCCAAACAAAATGAAAAGTAAATACCTT-----ACTG----------------TCGCCGTGTAAATTACAGGCTG----GATAAAATTACTATATGTGTTCGGAATTCGTTATTTTCTCTTTT--GTGTAGCAGACGGCATAGACACCTTGAAACGACATGTACTTTCCGGAAAATAAGTCCAATATTTGGATACGGTATAGACTTTATCAAAGAAAATGAAACAGTGCAGACACG----TTTTT--AT--TATACA---TTTGGTAACCTGAAACTATC
gi|7 : tcatttCCTTCCCTTG--CTGGTATAGAC-AACA--AAGATAG-CGACCCCAAATTCAACAAAAACAAAAAA-GATA--TCTCT-TTTCCGATC--TGTTTTACTTTTACCA-A-T------ATAGTAATTATGTATGGTTGTGTGATTTACC------GGGACATGC--ATA-TCCTTGCGATTTTATA----TGTG---AACTTGTGT--TGTCTCTGAAAAAAACAACATTAT-----ACCGGTGATAA-ATG-T-TCACGACTGCATGACGGC--------ATTCT-TTTAAATCG--------------ACTTTGCT-ATT-TTTTTGATTTATAGA--GA--TATTTA-CCTAATATAAACCTGTCTAAAATGGAA--TCAA-ACCTTTATAAACTGTTTAAAATAGAGCGTTTCTCCCTATAAAATTCAAGCTG----AATAG------TCTGTATACTCGAAATTTA-TATATTCTATTTT--A-ATGGGTCACGGTATTGG----GT---ACGGTATCTATTTTCGGGAAAATAAAACTGAAATTTGGAT
gi|8 : GTCCCGGTATAGAG-AATCTGAAG--GG-CGGCAATGA------CA-------AAGC-AATGCGTC--A-CTTCTAATCTGTGTTTTATTTTTTCCATATC--AGTAATA-TAATT------GGTGA-----TTAACTAAAA--GGAAA-GGCATATAATTGT---GATTGCATA----TGCTAACATCCTTTGT--TTTCTCTTAATAAAATAAAA--AAAACCCAACAGCGATCA-ACA-GGACTGCA-TG-ACGGTCAT--------TATTG-TTG-AATCAATAGAAG-AACCAGACATTGGT-ATTGTCCTCAGGCT--ACAGTGATCTATGT--T------TTAACCTGCCTTGAATAGATAGTTTATGCACT-----CCTG----------------CCTCCCTGGTGAGTCTAATCCGAGTAGATGAATTTATTctggtgcttggttctgacttaaaaaaggaaaggg
gi|9 : TGTATTCAAAATTCGTTATTTTCTATTTTTTGTGTAGAACAAGGCATAGACACCGTGAAACAGCATGTACTTTCTGGAAAA-AATGCCAATATTTGATTTCGGCATAGACTTTATTCAAGAAAAGGATACGATGCAGACATGTT-TTCTTTG-TT--TATACA---TTTGGTTACCTCAAACTATCAATTC--AGTTTTATA-GCATTACTTATCAGATATACA--CAGAACATTTGCCTA--ATATT--AAGTAATTGATAGGTTT------A-ACA-TATcgtgaatatactcttttattatt
Alignments
lowQualScore : 1111111 111111 2222222222 11 11111 3333333333333333 1111 22222 111 111 333333333333333 111 333333333 11 11 1 222222 1 888888888888888 1 2 1111111 222 222
lowQualScore : 4 3 44 3 0 1111111 3 3 3 3 2 4 3 88888 3 44 3 3 44 7777 1 44 44 222222 6 6 5 3 3 2222222222 3 3 3 0 4 4 4 0 4 44 2 1 11 0 1 1 0 22222 3333333333333333 0000 0 1 0 0 66 0 1 1 0 44444 333 77 777 0 888888888888888 777 333333333 33 33 3 7 6 2 888888 6 0 1 777777777777777 3 0 1 4444444 333 6 0 333 3
lowQualScore : . . .. . . ....... . . . . . . . ..... . .. . . .. .... . .. .. ...... . . . . . .......... . . . . . . . . . .. . . .. . . . . ..... ................ .... . . . . .. . . . . ..... ... .. ... . ............... ... ......... .. .. . . . . ...... . . . ............... . . . ....... ... . . ... .
lowQualScore : 0 3 66 3 5 8888888 6 6 1 1 1 0 3 33333 1 66 3 3 66 1111 0 66 66 999999 7 7 4 3 3 9999999999 6 5 6 1 1 0 4 1 4 77 4 0 99 2 1 4 4 55555 1111111111111111 6666 5 0 4 4 99 2 0 7 7 00000 999 99 999 7 222222222222222 555 555555555 88 88 3 3 7 0 888888 5 0 0 777777777777777 3 3 0 0000000 333 7 7 333 7
consensus : ACTGTCGTGATCGTGA-TACGGCATAGCTTTTCCGTGTTCCGGCATAGAC-AACC--AAGATGG-CGACAGCGATATCAACA-------AAAA-GGTACGTCTCA-TTTTCAATCTATATTTTGCTTTTACCA-A-CGAAGTAATANTAATT-TGTATGGCTG-----TTTACTGAAG--GGAACTAGC-TATA-TTGTT--GATTGCATA----TGCGTACAGCTTTTGA--TTCCTTTGAACAAAACAGAA--A------ATCAGCGATAA-ATG-TGTCTCTA-TG-ATGGCGGTA--------ATTT-TTTGATCGAGAGAAC-CACCTGATTTTGGTCATT-TCCTCGATCCA-ACA-CGATTTNTTT--TCAAATATAAACCCGAACAAAATGAAAAGTAAATACCTT-----ACTG----------------TCTCCCTGTAAAGTACAGGCTG----GATAAATTTACTNTATGTATTCGAAATTCGTTATTTTCTATTTT--GTGTAGCACACGGCATAGACACCGTGAAACGGCATGTACTTTCCGGAAAATAAGTCCNATATTTGGATACGGCATAGACTTTATCCAAGAAAAGGATACGGTGCAGACACGTT-TTTTTT--TT--TATACA---TTTGGTTACCTGAAACTATCAATTC--AGTTT--CAT---GCATTAC---TT-A-------TCAG--ATACA--CAATACATTT-TCTATTTTATTCAAAGGAATCGAAAGCTGT------ACGCA-TATACAATNA-ACG-----------TA-CTTTC-GTTNATATCGCTGCCGCCAT---CTTTGTTGTCTACGCCGGAACACGG---AAAAGCTATGCCGTATCACGATCGCGACAGTG
Reference ( family-1899 ) : ACTGTCGTGATCGTGA-TACGGCATAGCTTTTCCGTGTTCCGGCATAGAC-AACC--AAGATGG-CGACAGCGATATCAACA-------AAAA-GGTACGTCTCA-TTTTCAATCTATATTTTGCTTTTACCA-A-CGAAGTAATANTAATT-TGTATGGCTG-----TTTACTGAAG--GGAACTAGC-TATA-TTGTT--GATTGCATA----TGCGTACAGCTTTTGA--TTCCTTTGAACAAAACAGAA--A------ATCAGCGATAA-ATG-TGTCTCTA-TG-ATGGCGGTA--------ATTT-TTTGATCGAGAGAAC-CACCTGATTTTGGTCATT-TCCTCGATCCA-ACA-CGATTTNTTT--TCAAATATAAACCCGAACAAAATGAAAAGTAAATACCTT-----ACTG----------------TCTCCCTGTAAAGTACAGGCTG----GATAAATTTACTNTATGTATTCGAAATTCGTTATTTTCTATTTT--GTGTAGCACACGGCATAGACACCGTGAAACGGCATGTACTTTCCGGAAAATAAGTCCNATATTTGGATACGGCATAGACTTTATCCAAGAAAAGGATACGGTGCAGACACGTT-TTTTTT--TT--TATACA---TTTGGTTACCTGAAACTATCAATTC--AGTTT--CA----GCATTAC---TT-A-------TCAG--ATACA--CAATACATTT-TCTATTTTATTCAAAGGAATCGAAAGCTGT------ACGCA-TATACAATNAGACG-----------TA-CTTTTCGTTNATATCGCTGCCGCCAT---CTTTGTTGTCTACGCCGGAACACGG---AAAAGCTATGCCGTATCACGATCACGACAGTG
gi|1 : ACTGTCGTGATCGTGA-TACGGCATACCTTTTCCGTGTTCCGGCATAGAC-AACC--AAAATGG-CGACAGCGATATCAACA-------AACA-GGTATGTCTCA-TTTTCAATCTATATTTTGCTTTTACCA-A-CGAAGTAATATTAATT-TGTATGGCTG-----TTTACTGAAG--GCAACTAGC-TATA-TTGTT--GATTGCATA----TGCGTACAGCTTTTGA--TTCCTTTGAATAAAATAGAA--A------ATCAGCGATAC-ATG-TGTCTCTC-TG-ATGGCGGTA--------TTTT-TTTGATCGAGGGAAC-CACCGGATGTGGGTCATT-TTCTCTATCCA-ACA-CGATTTTTTTTGTTAAATATAAACTCGAATAAAATGAAAAGTAAATACCTT-----ACTG----------------TCTCTCTGTAAAGTGCAGACTG----GATAAGTTTACTCTTTGTATTCAAAATTCGTTATTTTCTATTTT--GTGTAGTACACGGCATAGACACCGTGAAAAGGCATGTACTTTCCGAAAAATAAGCCCAATATTTATATACGGCATAGACTTTATCAAAGAAAAGGAAACGGTGCAGACACGTT-TTTCTTTGTT--TATACA---TTTGGTTACCTGAAACTATCAATTCAAAGTTT--CA----GCATTAC---TT-A-------TCAG--ATACA--CAATATATTT-TCTATTTTATTCAAAGGAATCAAAAGCTGT------ACGCA-TATAAAATGAGACG-----------TACCTTTTTGCTGATATCGCTGTCGCCAT---CTAGGTTGTCTATGCCGGAACACGG---AGAAGCTATGCCGGAACACGATCACGACAGTG
gi|10 : ACTATCACGATCGTGA-TACGGCATAGCTTTTCCATGTTCCGGCATAGAC-AACC--AAAATGG-CAACACCAACA-CAACA-------AAAA-CGTACGTCTCATTTTTCAATCTATATTTTGCTTTTACCA-T-CATAGTAATAATAATT-TGTATGACTG-----ATGACTGAAG--GGAACTAAC-TATA-TTGTT--GATTCCATA----TGCGTACAGCTTTTTA--TTCCTTTGAACGAAACAGAA--A------ATCAGCGATAA-ATG-TG--TCTA-TG-ATGGCGGcgtca
gi|11 : tcATTT-TCTATTTTGTTCAAAGGAATCAAAAGCTGT------ACGCA-TATGCAATCA-ACAATATAGCTAGCTA-CTTTCAGTAAACA--------GCCATACACATTGTTAT---TGCCGGAACACGG---AAAAGCTATGCAGTATCACAATCACGACAGTG
gi|11 : aGCAATAACAATG-TGTATGGCTG-----TTTACTGAAA--GTAGCTAGC-TATA-TTGTT--GATTGCATA----TGCGTACAGCTTTTGA--TTCCTTTGAACAAAATAGAA--A------ATCAGCGATAA-ATG-TATCTCTA-TG-ATGGTGTT---------CTTT-TTT------GAAAAC-GACCAAAATCAGGTAGTT-CTCTCCAT-CA-ACA-cagcgataaatgtatctctatgatggtgttcttttttgaaaacgaccaaaatcaggtagttctctccatcaaca
gi|12 : acactgtcgtgattgtgatactgcatagcttttccgtgttccgTATTTTACTTTTACCA-A-CGAAGTTATAACGATG-TGTATGGCTG-----TTTACTGAAG--GGAACTAGC-TATA-TTGTT--GATTGCATA----TACGTACAGCTTTTGA--TTCCTTTGAACAAAATAGAA--A------ATCAGCGATAA-ATG-TGTCTTTA-TG-ATGGTGTTATGATGCCAGTGT-GTTGATGGAGAGAAC-TACCTGATTTTGGTCGTT-TTC
gi|13 : ACTATCGTGATCGTGA-TACGGCATAGCTTTTCTGCGTTCCGGCATAGAC-AACC--AAGTTGG-CGACAGCAATATCAACA-------AAAA-CGTACGTCTCA-TTTTTAATCTACATTTTGCTTTTACAA-A-CGAAATAATAATATTT-TTTCTGTCTG-----T-----------------------TA-TT-TT--GATTGCATG----TG-GTAC-GTTGTTTATCTTCCTTTAA
gi|14 : tGAAACAAAAACTGTCATCACATGCAATGTACAATAA---------------TA-TTTTT-GTTTGTATCATTGCCGCCAA---TTTTATTGTCTACACCAGAAAACGGGAAAAAAACGATAGCGTATAACCATCGCAACAGTG
gi|15 : ACTGTCGTGATCTTGA-TACGGCATTGGTTTTCCGTGTTCCGGCATAGAC-AACC--AAGATGG-AAACAGCGATATCAACA-------CAAA-GGTACGTCTGA-TTTTCAATCTATATTTTGCTTTTACCA-A-CGAtacattata
gi|16 : cAACGACGCAGAA--G-------TGATCGATGAGATGCTG---CTG-TG-ATTGCGGCG----------TT-TTTAAGCGAGAGAAC-TACCTGATT
gi|17 : attgtacttttttatcatTAGAC-AATC--AAGATGG-CGGCAATGACATCAATG-------AAAACGGTATGTCTCA-TTTTCAATCTATAATTTACTTTTACCA-A-TTAAGTAATGATagctgtgtttttaata
gi|18 : ACTGTCGTGATTG-GACTCCGGCACATCATTTTTG-GAACCGGCACATACTATCC--AAGATGGCCGACt
gi|19 : ACTGTCGTGATCGTGA-TACGGCATAGCTTTTCCGTGTTCCGGCATAgctat
gi|2 : cACTGTCGTGATCGTGA-TACGGCATAGCTTTTCCGTGTT---------A--AACC--AAGATGG-CGACAGCGATGTCAACA-------AAAA-AGTACGTCTCA-TTTTCGATCTATATTTTGCTTTTACCA-A-CGAAGCAATACTAATT-TGTATGGCTG-----TTTACTAAAG--GGAACTAGC-TATA-TTGTT--CATTGCATA----TGCGTACTATTTTTGA--TTCCTTTAAACAAAACAGAA--A------ATCAGCGACAA-ATG-TATCTCTA-TG-ATGGCGGTA--------AATT-TTTGATCGAGAGAAC-CACCTAATTTTGGTCATT-TCTTCAATCCA-TCA-CGATTTCTTT--TCAAATATAAACCCGAATAAAACGAAAAGTAAATACCTT-----ACCG----------------TCTCCTTGTAAAGTACCGGCTA----GATAAATTTACTATATGTATTCGTAATTCGTTATTTTCTATTTT--GCAGAGCGCACGGCGTAGACACCGTGAAACGGCATGTTTTTTCCGGAAAATAAGTCCCATATTTGGATATGGCATAGACATTAATCAAG-AAAGGATACGGTGCAGACACG--------T--TT--TATAAATAGTTTGGTAACCTGAAACTA-----TC--AGTTT--TATACTACATTAC---TTAA-------AAAG--ATACACGCAATACA
gi|3 : cACTGTCGTGATCGTGA-TACGGCATAGCTTTTCAGTGTTCCGGCATAGAC-AACC--AAGATGG-CGACAGCGATATCAACA-------AAAA-AGTACGTCTCA-TTTTCAATCTAAATCT-GCTTTTACCA-A-CGAAGCAATACTAATT-TGTATGGTTG-----TTTACTGAAG--GGAACTAGC-TATA-TTGTT--CATTGAATAATTATGCTTACATCTTTTGA--TTCCTTTGAACAAAACAGAA--A------ATCAGCGATAA-ATG-TGTCTCTA-TG-ATGGCGGTT--------ATTT-TTTGATCGAGAGAAC-CACCTAATTTTGGTCATT-TCCTCAATCCA-ACA-CGATATGTTT--TCAAAAATAAACCCAAACAAAATGAAAA-TAAATACCTT-----ATTG----------------TCTCCCTGTAAAGTACAGGCAG----GATAAATTTACTCTATGTATTCGAAATTTGTTATTTTCTATTTT--ATGTAGCACACGGCATAGACACCGTGAAACGGCATGTACTTTCCGGAAAATAAGTCCCATATTTGGATACGGCATAGACTTTATCCAAGAAAAGGATACGGTGCAGACACGTT-TATTTT--GTAATATACA---TTTCGTTGCCTGAAACTATCAATCC---------CAT---ACATTACTCTTT-ATCCATGGTCAA--ATACA--CGAcagaacaattgcttaattaattgttgatcaatatcacggtttgatctagttttggaccagtggtagtattttattggaaaacagaataaaacaaatatgacattaacaataaatgcgtttgtaggtgtgctgtgcagggcagggactttacctg
gi|4 : cATATTTTACTTTTATCA-A-CAAGGAAATTATAATT-TGTCTGGCTG-----TTTACT--AGTCGGAACTAAT-TATA------------------------------CTTTTGG--TTTATTTGAACACATTAGAA--A------TTC-----TAAGATGATG---ATG-TG-ATTGCAGTA--------ATTGATTTAATCGAGAGAAC-AACCTGACTTTGACTATT-TTCTAGATATA-TCA-T-ATATTTTT--TTAAATATAAACCCGAAGAAAATGACAAATAAAAGCATT-----ACTG----------------TCTTCCAGTAAAGTATAGGCTT----GATAAATATACTTTGTGTATTCGAAATCCGATA------GTTTT--GTGTTGTACATGGCATAGACACGGGGAAACGGCATACACTTTCCGGAAAATAAGTCACATATTTGGATCCGGTATGGACTTT-TTCAAGAAAATGATACGGTGCATACACG-------TT--TT--AATACAAT-TTTTGTTATCTTAAAATATAAGTT
gi|5 : ACTGTCGAGATCGTGA-TACGGCATAGCTTTTCCGTGTTCCGGCATAGAC-AGCC--AAGATGG-CGACAGCGATATCAACA-------AAAA-GGTACGTCCCA-TTTTCAATCTATACTTTGCTTTTACCA-A-CGAAGTAATATTAATG-TGTATGGCTG-----TTAACTGAAG--GAAACTAGC-TATA-TTGTT--GATTTCATA----TGCATACAGCTTTTGG--TTCCTTTGAATAAAATAGAA--A------ATCAGCGATGC-ATG-TGTGTCTA-TG-ATGGTGGT---------ATTT-TTTGATCGAGAGAAC-CACATAATTTTGGTCGTT-TCCTCAATCCA-ACA-CGGTTTCTTT--TCAAATATCAACCCAAACAAAATGAAAAGTAAATATCTT-----ACTG----------------TCGTCGTGTAAATTACAGACTG----GATAAAATTACTATATGTATTCGGAATTCGTTAATTTCTATTTT--GTGTAGCACACGGCATAGACACCGTAAAACGACATGTACTTTCCTGAAAATAAGTCACATATTTGGATACGGCATAGAA--AATCCAAGAAAATGATACGATGCAGACACGCTATTTTTT--CT--TAAACA---GTTGGTTACCTTAAACTATTAATTatttatgagaacgtttggataattaactggttgatcagttttacagtttgttctagtaatgttctggttttggaacgtcgaccatagtgatagcattatattggaaagcagaacgcgtttgtaagtgtactgtgctgttcatgtacagggca
gi|6 : tcTCATGATCGTGA-TACGGCATAGCTTTTCCGTGTTCCGGCATAGAC-AACC--AAGATGG-CGACAGCGATACCAACA-------AACG-GGTACGTCTCA-TTTTCAATCTA-GTTTT-CTTTTACCA-A-CGAAATAATACTAATT-TGTATAGGTG-----TTTACTGAAG--GAAACTAGT-TATA-TTGTT--GATTGCATA----TGCGTACATCTTTTGA--TTAGTTTGAACAAACCAGGA--A------ATCAGCGATAA-ATG-TGTCTCTA-TG-ACGGCGGTA--------ATAT-TTTGATCGAAAAAAAACACCTTATTTTGGTCATT-TCCTCAATCCA-ACA-CGATTTATTT--TCAAATATAAACCCAAACAAAATGAAAAGTAAATACCTT-----ACTG----------------TCGCCGTGTAAATTACAGGCTG----GATAAAATTACTATATGTGTTCGGAATTCGTTATTTTCTCTTTT--GTGTAGCAGACGGCATAGACACCTTGAAACGACATGTACTTTCCGGAAAATAAGTCCAATATTTGGATACGGTATAGACTTTATCAAAGAAAATGAAACAGTGCAGACACG----TTTTT--AT--TATACA---TTTGGTAACCTGAAACTATC
gi|7 : tcatttCCTTCCCTTG--CTGGTATAGAC-AACA--AAGATAG-CGACCCCAAATTCAACAAAAACAAAAAA-GATA--TCTCT-TTTCCGATC--TGTTTTACTTTTACCA-A-T------ATAGTAATTATGTATGGTTGTGTGATTTACC------GGGACATGC--ATA-TCCTTGCGATTTTATA----TGTG---AACTTGTGT--TGTCTCTGAAAAAAACAACATTAT-----ACCGGTGATAA-ATG-T-TCACGACTGCATGACGGCA--------TTCT-TTT--------AAAT-C----GACTTTGCT-ATT-TTTTTGATTTATAGA--GA--TATTTA-CCTAATATAAACCTGTCTAAAATGGAA--TCAA-ACCTTTATAAACTGTTTAAAATAGAGCGTTTCTCCCTATAAAATTCAAGCTG----AATAG------TCTGTATACTCGAAATTTA-TATATTCTATTTT--A-ATGGGTCACGGTATTGG----GT---ACGGTATCTATTTTCGGGAAAATAAAACTGAAATTTGGAT
gi|8 : GTCCCGGTATAGAG-AATCTGAAG--GG-CGGCAATGA------CA-------AAGC-AATGCGTC--A-CTTCTAATCTGTGTTTTATTTTTTCCATATC--AGTAATA-TAATT------GGTGA-----TTAACTAAAA--GGAAA-GGCATATAATTGT---GATTGCATA----TGCTAACATCCTTTGT--TTTCTCTTAATAAAATAAAA--AAAACCCAACAGCGATCA-ACA-GGACTGCA-TG-ACGGTCATT--------ATTG-TTGAATCAATAGAAG-AACCAGACATTGGT-ATTGTCCTCAGGCT--ACAGTGATCTATGT--T------TTAACCTGCCTTGAATAGATAGTTTATGCACT-----CCTG----------------CCTCCCTGGTGAGTCTAATCCGAGTAGATGAATTTATTctggtgcttggttctgacttaaaaaaggaaaggg
gi|9 : TGTATTCAAAATTCGTTATTTTCTATTTTTTGTGTAGAACAAGGCATAGACACCGTGAAACAGCATGTACTTTCTGGAAAA-AATGCCAATATTTGATTTCGGCATAGACTTTATTCAAGAAAAGGATACGATGCAGACATGTT-TTCTTTG-TT--TATACA---TTTGGTTACCTCAAACTATCAATTC--AGTTTTATA----GCATTAC---TT-A-------TCAGATATACA--CAGAACATTTGCCTA--ATATT--AAGTAATTGATAGGTTT------A-ACA-TATcgtgaatatactcttttattatt
Alignments
lowQualScore : 1111111 111111 2222222222 11 11111 3333333333333333 1111 22222 111 111 111 33333 111 333333333 11 11 1 222222 1 888888888888888 11 111111 222 111 222
lowQualScore : 4 3 44 3 0 1111111 3 3 3 3 2 4 3 88888 3 44 3 3 44 7777 1 44 44 222222 6 6 5 3 3 2222222222 3 3 3 0 4 4 4 0 4 44 2 1 11 0 1 1 0 22222 3333333333333333 0000 0 1 0 0 66 0 1 1 0 44444 333 77 777 0 777 00000 777 333333333 33 33 3 7 6 2 888888 6 0 1 666666666666666 88 0 4 1 111111 333 000 333 3 0
lowQualScore : . . .. . . ....... . . . . . . . ..... . .. . . .. .... . .. .. ...... . . . . . .......... . . . . . . . . . .. . . .. . . . . ..... ................ .... . . . . .. . . . . ..... ... .. ... . ... ..... ... ......... .. .. . . . . ...... . . . ............... .. . . . ...... ... ... ... . .
lowQualScore : 0 3 66 3 5 8888888 6 6 1 1 1 0 3 33333 1 66 3 3 66 1111 0 66 66 999999 7 7 4 3 3 9999999999 6 5 6 1 1 0 4 1 4 77 4 0 99 2 1 4 4 55555 1111111111111111 6666 5 0 4 4 99 2 0 7 7 00000 999 99 999 7 000 88888 555 555555555 88 88 3 3 7 0 888888 5 0 0 000000000000000 33 7 0 0 000000 333 000 333 7 7
consensus : ACTGTCGTGATCGTGA-TACGGCATAGCTTTTCCGTGTTCCGGCATAGAC-AACC--AAGATGG-CGACAGCGATATCAACA-------AAAA-GGTACGTCTCA-TTTTCAATCTATATTTTGCTTTTACCA-A-CGAAGTAATANTAATT-TGTATGGCTG-----TTTACTGAAG--GGAACTAGC-TATA-TTGTT--GATTGCATA----TGCGTACAGCTTTTGA--TTCCTTTGAACAAAACAGAA--A------ATCAGCGATAA-ATG-TGTCTCTA-TG-ATGGCGGTA--------ATTT-TTTGATCGAGAGAAC-CACCTGATTTTGGTCATT-TCCTCGATCCA-ACA-CGATTTNTTT--TCAAATATAAACCCGAACAAAATGAAAAGTAAATACCTT-----ACTG----------------TCTCCCTGTAAAGTACAGGCTG----GATAAATTTACTNTATGTATTCGAAATTCGTTATTTTCTATTTT--GTGTAGCACACGGCATAGACACCGTGAAACGGCATGTACTTTCCGGAAAATAAGTCCNATATTTGGATACGGCATAGACTTTATCCAAGAAAAGGATACGGTGCAGACACGTT-TTTTTT--TT--TATACA---TTTGGTTACCTGAAACTATCAATTC--AGTTTCA---T-GCATTAC---TT-A-------TCAG--ATACA--CAATACATTT-TCTATTTTATTCAAAGGAATCGAAAGCTGT------ACGCA-TATACAATNA-ACG-----------TAC--TTTCGNTNATATCGCTGCCGCCAT---CTTTGTTGTCTACGCCGGAACACGG---AAAAGCTATGCCGTATCACGATCGCGACAGTG
Reference ( family-1899 ) : ACTGTCGTGATCGTGA-TACGGCATAGCTTTTCCGTGTTCCGGCATAGAC-AACC--AAGATGG-CGACAGCGATATCAACA-------AAAA-GGTACGTCTCA-TTTTCAATCTATATTTTGCTTTTACCA-A-CGAAGTAATANTAATT-TGTATGGCTG-----TTTACTGAAG--GGAACTAGC-TATA-TTGTT--GATTGCATA----TGCGTACAGCTTTTGA--TTCCTTTGAACAAAACAGAA--A------ATCAGCGATAA-ATG-TGTCTCTA-TG-ATGGCGGTA--------ATTT-TTTGATCGAGAGAAC-CACCTGATTTTGGTCATT-TCCTCGATCCA-ACA-CGATTTNTTT--TCAAATATAAACCCGAACAAAATGAAAAGTAAATACCTT-----ACTG----------------TCTCCCTGTAAAGTACAGGCTG----GATAAATTTACTNTATGTATTCGAAATTCGTTATTTTCTATTTT--GTGTAGCACACGGCATAGACACCGTGAAACGGCATGTACTTTCCGGAAAATAAGTCCNATATTTGGATACGGCATAGACTTTATCCAAGAAAAGGATACGGTGCAGACACGTT-TTTTTT--TT--TATACA---TTTGGTTACCTGAAACTATCAATTC--AGTTTCA---T-GCATTAC---TT-A-------TCAG--ATACA--CAATACATTT-TCTATTTTATTCAAAGGAATCGAAAGCTGT------ACGCA-TATACAATNA-ACG-----------TAC--TTTCGTTNATATCGCTGCCGCCAT---CTTTGTTGTCTACGCCGGAACACGG---AAAAGCTATGCCGTATCACGATCGCGACAGTG
gi|1 : ACTGTCGTGATCGTGA-TACGGCATACCTTTTCCGTGTTCCGGCATAGAC-AACC--AAAATGG-CGACAGCGATATCAACA-------AACA-GGTATGTCTCA-TTTTCAATCTATATTTTGCTTTTACCA-A-CGAAGTAATATTAATT-TGTATGGCTG-----TTTACTGAAG--GCAACTAGC-TATA-TTGTT--GATTGCATA----TGCGTACAGCTTTTGA--TTCCTTTGAATAAAATAGAA--A------ATCAGCGATAC-ATG-TGTCTCTC-TG-ATGGCGGTA--------TTTT-TTTGATCGAGGGAAC-CACCGGATGTGGGTCATT-TTCTCTATCCA-ACA-CGATTTTTTTTGTTAAATATAAACTCGAATAAAATGAAAAGTAAATACCTT-----ACTG----------------TCTCTCTGTAAAGTGCAGACTG----GATAAGTTTACTCTTTGTATTCAAAATTCGTTATTTTCTATTTT--GTGTAGTACACGGCATAGACACCGTGAAAAGGCATGTACTTTCCGAAAAATAAGCCCAATATTTATATACGGCATAGACTTTATCAAAGAAAAGGAAACGGTGCAGACACGTT-TTTCTTTGTT--TATACA---TTTGGTTACCTGAAACTATCAATTCAAAGTTTCA-----GCATTAC---TT-A-------TCAG--ATACA--CAATATATTT-TCTATTTTATTCAAAGGAATCAAAAGCTGT------ACGCA-TATAAAATGAGACG-----------TACCTTTTTGCTGATATCGCTGTCGCCAT---CTAGGTTGTCTATGCCGGAACACGG---AGAAGCTATGCCGGAACACGATCACGACAGTG
gi|10 : ACTATCACGATCGTGA-TACGGCATAGCTTTTCCATGTTCCGGCATAGAC-AACC--AAAATGG-CAACACCAACA-CAACA-------AAAA-CGTACGTCTCATTTTTCAATCTATATTTTGCTTTTACCA-T-CATAGTAATAATAATT-TGTATGACTG-----ATGACTGAAG--GGAACTAAC-TATA-TTGTT--GATTCCATA----TGCGTACAGCTTTTTA--TTCCTTTGAACGAAACAGAA--A------ATCAGCGATAA-ATG-TG--TCTA-TG-ATGGCGGcgtca
gi|11 : tcATTT-TCTATTTTGTTCAAAGGAATCAAAAGCTGT------ACGCA-TATGCAATCA-ACAATATAGCTAGCTAC--TTTCAGTAA-------ACAGCCATACACATTGTTATT---GCCGGAACACGG---AAAAGCTATGCAGTATCACAATCACGACAGTG
gi|11 : aGCAATAACAATG-TGTATGGCTG-----TTTACTGAAA--GTAGCTAGC-TATA-TTGTT--GATTGCATA----TGCGTACAGCTTTTGA--TTCCTTTGAACAAAATAGAA--A------ATCAGCGATAA-ATG-TATCTCTA-TG-ATGGTGTT---------CTTT-TTT------GAAAAC-GACCAAAATCAGGTAGTT-CTCTCCAT-CA-ACA-cagcgataaatgtatctctatgatggtgttcttttttgaaaacgaccaaaatcaggtagttctctccatcaaca
gi|12 : acactgtcgtgattgtgatactgcatagcttttccgtgttccgTATTTTACTTTTACCA-A-CGAAGTTATAACGATG-TGTATGGCTG-----TTTACTGAAG--GGAACTAGC-TATA-TTGTT--GATTGCATA----TACGTACAGCTTTTGA--TTCCTTTGAACAAAATAGAA--A------ATCAGCGATAA-ATG-TGTCTTTA-TG-ATGGTGTTATGATGCCAGTGT-GTTGATGGAGAGAAC-TACCTGATTTTGGTCGTT-TTC
gi|13 : ACTATCGTGATCGTGA-TACGGCATAGCTTTTCTGCGTTCCGGCATAGAC-AACC--AAGTTGG-CGACAGCAATATCAACA-------AAAA-CGTACGTCTCA-TTTTTAATCTACATTTTGCTTTTACAA-A-CGAAATAATAATATTT-TTTCTGTCTG-----T-----------------------TA-TT-TT--GATTGCATG----TG-GTAC-GTTGTTTATCTTCCTTTAA
gi|14 : tGAAACAAAAACTGTCATCACATGCAATGTACAATAA---------------TAT--TTTTGTTTGTATCATTGCCGCCAA---TTTTATTGTCTACACCAGAAAACGGGAAAAAAACGATAGCGTATAACCATCGCAACAGTG
gi|15 : ACTGTCGTGATCTTGA-TACGGCATTGGTTTTCCGTGTTCCGGCATAGAC-AACC--AAGATGG-AAACAGCGATATCAACA-------CAAA-GGTACGTCTGA-TTTTCAATCTATATTTTGCTTTTACCA-A-CGAtacattata
gi|16 : cAACGACGCAGAA--G-------TGATCGATGAGATGCTG---CTG-TG-ATTGCGGCG----------TT-TTTAAGCGAGAGAAC-TACCTGATT
gi|17 : attgtacttttttatcatTAGAC-AATC--AAGATGG-CGGCAATGACATCAATG-------AAAACGGTATGTCTCA-TTTTCAATCTATAATTTACTTTTACCA-A-TTAAGTAATGATagctgtgtttttaata
gi|18 : ACTGTCGTGATTG-GACTCCGGCACATCATTTTTG-GAACCGGCACATACTATCC--AAGATGGCCGACt
gi|19 : ACTGTCGTGATCGTGA-TACGGCATAGCTTTTCCGTGTTCCGGCATAgctat
gi|2 : cACTGTCGTGATCGTGA-TACGGCATAGCTTTTCCGTGTT---------A--AACC--AAGATGG-CGACAGCGATGTCAACA-------AAAA-AGTACGTCTCA-TTTTCGATCTATATTTTGCTTTTACCA-A-CGAAGCAATACTAATT-TGTATGGCTG-----TTTACTAAAG--GGAACTAGC-TATA-TTGTT--CATTGCATA----TGCGTACTATTTTTGA--TTCCTTTAAACAAAACAGAA--A------ATCAGCGACAA-ATG-TATCTCTA-TG-ATGGCGGTA--------AATT-TTTGATCGAGAGAAC-CACCTAATTTTGGTCATT-TCTTCAATCCA-TCA-CGATTTCTTT--TCAAATATAAACCCGAATAAAACGAAAAGTAAATACCTT-----ACCG----------------TCTCCTTGTAAAGTACCGGCTA----GATAAATTTACTATATGTATTCGTAATTCGTTATTTTCTATTTT--GCAGAGCGCACGGCGTAGACACCGTGAAACGGCATGTTTTTTCCGGAAAATAAGTCCCATATTTGGATATGGCATAGACATTAATCAAG-AAAGGATACGGTGCAGACACG--------T--TT--TATAAATAGTTTGGTAACCTGAAACTA-----TC--AGTTTTATACT-ACATTAC---TTAA-------AAAG--ATACACGCAATACA
gi|3 : cACTGTCGTGATCGTGA-TACGGCATAGCTTTTCAGTGTTCCGGCATAGAC-AACC--AAGATGG-CGACAGCGATATCAACA-------AAAA-AGTACGTCTCA-TTTTCAATCTAAATCT-GCTTTTACCA-A-CGAAGCAATACTAATT-TGTATGGTTG-----TTTACTGAAG--GGAACTAGC-TATA-TTGTT--CATTGAATAATTATGCTTACATCTTTTGA--TTCCTTTGAACAAAACAGAA--A------ATCAGCGATAA-ATG-TGTCTCTA-TG-ATGGCGGTT--------ATTT-TTTGATCGAGAGAAC-CACCTAATTTTGGTCATT-TCCTCAATCCA-ACA-CGATATGTTT--TCAAAAATAAACCCAAACAAAATGAAAA-TAAATACCTT-----ATTG----------------TCTCCCTGTAAAGTACAGGCAG----GATAAATTTACTCTATGTATTCGAAATTTGTTATTTTCTATTTT--ATGTAGCACACGGCATAGACACCGTGAAACGGCATGTACTTTCCGGAAAATAAGTCCCATATTTGGATACGGCATAGACTTTATCCAAGAAAAGGATACGGTGCAGACACGTT-TATTTT--GTAATATACA---TTTCGTTGCCTGAAACTATCAATCC-------CA---T-ACATTACTCTTT-ATCCATGGTCAA--ATACA--CGAcagaacaattgcttaattaattgttgatcaatatcacggtttgatctagttttggaccagtggtagtattttattggaaaacagaataaaacaaatatgacattaacaataaatgcgtttgtaggtgtgctgtgcagggcagggactttacctg
gi|4 : cATATTTTACTTTTATCA-A-CAAGGAAATTATAATT-TGTCTGGCTG-----TTTACT--AGTCGGAACTAAT-TATA------------------------------CTTTTGG--TTTATTTGAACACATTAGAA--A------TTC-----TAAGATGATG---ATG-TG-ATTGCAGTA--------ATTGATTTAATCGAGAGAAC-AACCTGACTTTGACTATT-TTCTAGATATA-TCA-T-ATATTTTT--TTAAATATAAACCCGAAGAAAATGACAAATAAAAGCATT-----ACTG----------------TCTTCCAGTAAAGTATAGGCTT----GATAAATATACTTTGTGTATTCGAAATCCGATA------GTTTT--GTGTTGTACATGGCATAGACACGGGGAAACGGCATACACTTTCCGGAAAATAAGTCACATATTTGGATCCGGTATGGACTTT-TTCAAGAAAATGATACGGTGCATACACG-------TT--TT--AATACAAT-TTTTGTTATCTTAAAATATAAGTT
gi|5 : ACTGTCGAGATCGTGA-TACGGCATAGCTTTTCCGTGTTCCGGCATAGAC-AGCC--AAGATGG-CGACAGCGATATCAACA-------AAAA-GGTACGTCCCA-TTTTCAATCTATACTTTGCTTTTACCA-A-CGAAGTAATATTAATG-TGTATGGCTG-----TTAACTGAAG--GAAACTAGC-TATA-TTGTT--GATTTCATA----TGCATACAGCTTTTGG--TTCCTTTGAATAAAATAGAA--A------ATCAGCGATGC-ATG-TGTGTCTA-TG-ATGGTGGT---------ATTT-TTTGATCGAGAGAAC-CACATAATTTTGGTCGTT-TCCTCAATCCA-ACA-CGGTTTCTTT--TCAAATATCAACCCAAACAAAATGAAAAGTAAATATCTT-----ACTG----------------TCGTCGTGTAAATTACAGACTG----GATAAAATTACTATATGTATTCGGAATTCGTTAATTTCTATTTT--GTGTAGCACACGGCATAGACACCGTAAAACGACATGTACTTTCCTGAAAATAAGTCACATATTTGGATACGGCATAGAA--AATCCAAGAAAATGATACGATGCAGACACGCTATTTTTT--CT--TAAACA---GTTGGTTACCTTAAACTATTAATTatttatgagaacgtttggataattaactggttgatcagttttacagtttgttctagtaatgttctggttttggaacgtcgaccatagtgatagcattatattggaaagcagaacgcgtttgtaagtgtactgtgctgttcatgtacagggca
gi|6 : tcTCATGATCGTGA-TACGGCATAGCTTTTCCGTGTTCCGGCATAGAC-AACC--AAGATGG-CGACAGCGATACCAACA-------AACG-GGTACGTCTCA-TTTTCAATCTA-GTTTT-CTTTTACCA-A-CGAAATAATACTAATT-TGTATAGGTG-----TTTACTGAAG--GAAACTAGT-TATA-TTGTT--GATTGCATA----TGCGTACATCTTTTGA--TTAGTTTGAACAAACCAGGA--A------ATCAGCGATAA-ATG-TGTCTCTA-TG-ACGGCGGTA--------ATAT-TTTGATCGAAAAAAAACACCTTATTTTGGTCATT-TCCTCAATCCA-ACA-CGATTTATTT--TCAAATATAAACCCAAACAAAATGAAAAGTAAATACCTT-----ACTG----------------TCGCCGTGTAAATTACAGGCTG----GATAAAATTACTATATGTGTTCGGAATTCGTTATTTTCTCTTTT--GTGTAGCAGACGGCATAGACACCTTGAAACGACATGTACTTTCCGGAAAATAAGTCCAATATTTGGATACGGTATAGACTTTATCAAAGAAAATGAAACAGTGCAGACACG----TTTTT--AT--TATACA---TTTGGTAACCTGAAACTATC
gi|7 : tcatttCCTTCCCTTG--CTGGTATAGAC-AACA--AAGATAG-CGACCCCAAATTCAACAAAAACAAAAAA-GATA--TCTCT-TTTCCGATC--TGTTTTACTTTTACCA-A-T------ATAGTAATTATGTATGGTTGTGTGATTTACC------GGGACATGC--ATA-TCCTTGCGATTTTATA----TGTG---AACTTGTGT--TGTCTCTGAAAAAAACAACATTAT-----ACCGGTGATAA-ATG-T-TCACGACTGCATGACGGCA--------TTCT-TTT--------AAAT-C----GACTTTGCT-ATT-TTTTTGATTTATAGA--GA--TATTTA-CCTAATATAAACCTGTCTAAAATGGAA--TCAA-ACCTTTATAAACTGTTTAAAATAGAGCGTTTCTCCCTATAAAATTCAAGCTG----AATAG------TCTGTATACTCGAAATTTA-TATATTCTATTTT--A-ATGGGTCACGGTATTGG----GT---ACGGTATCTATTTTCGGGAAAATAAAACTGAAATTTGGAT
gi|8 : GTCCCGGTATAGAG-AATCTGAAG--GG-CGGCAATGA------CA-------AAGC-AATGCGTC--A-CTTCTAATCTGTGTTTTATTTTTTCCATATC--AGTAATA-TAATT------GGTGA-----TTAACTAAAA--GGAAA-GGCATATAATTGT---GATTGCATA----TGCTAACATCCTTTGT--TTTCTCTTAATAAAATAAAA--AAAACCCAACAGCGATCA-ACA-GGACTGCA-TG-ACGGTCATT--------ATTG-TTGAATCAATAGAAG-AACCAGACATTGGT-ATTGTCCTCAGGCT--ACAGTGATCTATGT--T------TTAACCTGCCTTGAATAGATAGTTTATGCACT-----CCTG----------------CCTCCCTGGTGAGTCTAATCCGAGTAGATGAATTTATTctggtgcttggttctgacttaaaaaaggaaaggg
gi|9 : TGTATTCAAAATTCGTTATTTTCTATTTTTTGTGTAGAACAAGGCATAGACACCGTGAAACAGCATGTACTTTCTGGAAAA-AATGCCAATATTTGATTTCGGCATAGACTTTATTCAAGAAAAGGATACGATGCAGACATGTT-TTCTTTG-TT--TATACA---TTTGGTTACCTCAAACTATCAATTC--AGTTTTA---TAGCATTAC---TT-A-------TCAGATATACA--CAGAACATTTGCCTA--ATATT--AAGTAATTGATAGGTTT------A-ACA-TATcgtgaatatactcttttattatt
Alignments
lowQualScore : 1111111 111111 2222222222 11 11111 3333333333333333 1111 22222 111 111 111 33333 111 333333333 11 11 1 222222 1 888888888888888 11 111111 222 111 222
lowQualScore : 4 3 44 3 0 1111111 3 3 3 3 2 4 3 88888 3 44 3 3 44 7777 1 44 44 222222 6 6 5 3 3 2222222222 3 3 3 0 4 4 4 0 4 44 2 1 11 0 1 1 0 22222 3333333333333333 0000 0 1 0 0 66 0 1 1 0 44444 333 77 777 0 777 00000 777 333333333 33 33 3 7 6 2 888888 6 0 1 666666666666666 88 0 1 1 111111 333 000 333 3 0
lowQualScore : . . .. . . ....... . . . . . . . ..... . .. . . .. .... . .. .. ...... . . . . . .......... . . . . . . . . . .. . . .. . . . . ..... ................ .... . . . . .. . . . . ..... ... .. ... . ... ..... ... ......... .. .. . . . . ...... . . . ............... .. . . . ...... ... ... ... . .
lowQualScore : 0 3 66 3 5 8888888 6 6 1 1 1 0 3 33333 1 66 3 3 66 1111 0 66 66 999999 7 7 4 3 3 9999999999 6 5 6 1 1 0 4 1 4 77 4 0 99 2 1 4 4 55555 1111111111111111 6666 5 0 4 4 99 2 0 7 7 00000 999 99 999 7 000 88888 555 555555555 88 88 3 3 7 0 888888 5 0 0 000000000000000 33 7 0 0 000000 333 000 333 7 7
consensus : ACTGTCGTGATCGTGA-TACGGCATAGCTTTTCCGTGTTCCGGCATAGAC-AACC--AAGATGG-CGACAGCGATATCAACA-------AAAA-GGTACGTCTCA-TTTTCAATCTATATTTTGCTTTTACCA-A-CGAAGTAATANTAATT-TGTATGGCTG-----TTTACTGAAG--GGAACTAGC-TATA-TTGTT--GATTGCATA----TGCGTACAGCTTTTGA--TTCCTTTGAACAAAACAGAA--A------ATCAGCGATAA-ATG-TGTCTCTA-TG-ATGGCGGTA--------ATTT-TTTGATCGAGAGAAC-CACCTGATTTTGGTCATT-TCCTCGATCCA-ACA-CGATTTNTTT--TCAAATATAAACCCGAACAAAATGAAAAGTAAATACCTT-----ACTG----------------TCTCCCTGTAAAGTACAGGCTG----GATAAATTTACTNTATGTATTCGAAATTCGTTATTTTCTATTTT--GTGTAGCACACGGCATAGACACCGTGAAACGGCATGTACTTTCCGGAAAATAAGTCCNATATTTGGATACGGCATAGACTTTATCCAAGAAAAGGATACGGTGCAGACACGTT-TTTTTT--TT--TATACA---TTTGGTTACCTGAAACTATCAATTC--AGTTTCA---T-GCATTAC---TT-A-------TCAG--ATACA--CAATACATTT-TCTATTTTATTCAAAGGAATCGAAAGCTGT------ACGCA-TATACAATNA-ACG-----------TAC--TTTCGNTNATATCGCTGCCGCCAT---CTTTGTTGTCTACGCCGGAACACGG---AAAAGCTATGCCGTATCACGATCGCGACAGTG
Reference ( family-1899 ) : ACTGTCGTGATCGTGA-TACGGCATAGCTTTTCCGTGTTCCGGCATAGAC-AACC--AAGATGG-CGACAGCGATATCAACA-------AAAA-GGTACGTCTCA-TTTTCAATCTATATTTTGCTTTTACCA-A-CGAAGTAATANTAATT-TGTATGGCTG-----TTTACTGAAG--GGAACTAGC-TATA-TTGTT--GATTGCATA----TGCGTACAGCTTTTGA--TTCCTTTGAACAAAACAGAA--A------ATCAGCGATAA-ATG-TGTCTCTA-TG-ATGGCGGTA--------ATTT-TTTGATCGAGAGAAC-CACCTGATTTTGGTCATT-TCCTCGATCCA-ACA-CGATTTNTTT--TCAAATATAAACCCGAACAAAATGAAAAGTAAATACCTT-----ACTG----------------TCTCCCTGTAAAGTACAGGCTG----GATAAATTTACTNTATGTATTCGAAATTCGTTATTTTCTATTTT--GTGTAGCACACGGCATAGACACCGTGAAACGGCATGTACTTTCCGGAAAATAAGTCCNATATTTGGATACGGCATAGACTTTATCCAAGAAAAGGATACGGTGCAGACACGTT-TTTTTT--TT--TATACA---TTTGGTTACCTGAAACTATCAATTC--AGTTTCA---T-GCATTAC---TT-A-------TCAG--ATACA--CAATACATTT-TCTATTTTATTCAAAGGAATCGAAAGCTGT------ACGCA-TATACAATNA-ACG-----------TAC--TTTCGNTNATATCGCTGCCGCCAT---CTTTGTTGTCTACGCCGGAACACGG---AAAAGCTATGCCGTATCACGATCGCGACAGTG
gi|1 : ACTGTCGTGATCGTGA-TACGGCATACCTTTTCCGTGTTCCGGCATAGAC-AACC--AAAATGG-CGACAGCGATATCAACA-------AACA-GGTATGTCTCA-TTTTCAATCTATATTTTGCTTTTACCA-A-CGAAGTAATATTAATT-TGTATGGCTG-----TTTACTGAAG--GCAACTAGC-TATA-TTGTT--GATTGCATA----TGCGTACAGCTTTTGA--TTCCTTTGAATAAAATAGAA--A------ATCAGCGATAC-ATG-TGTCTCTC-TG-ATGGCGGTA--------TTTT-TTTGATCGAGGGAAC-CACCGGATGTGGGTCATT-TTCTCTATCCA-ACA-CGATTTTTTTTGTTAAATATAAACTCGAATAAAATGAAAAGTAAATACCTT-----ACTG----------------TCTCTCTGTAAAGTGCAGACTG----GATAAGTTTACTCTTTGTATTCAAAATTCGTTATTTTCTATTTT--GTGTAGTACACGGCATAGACACCGTGAAAAGGCATGTACTTTCCGAAAAATAAGCCCAATATTTATATACGGCATAGACTTTATCAAAGAAAAGGAAACGGTGCAGACACGTT-TTTCTTTGTT--TATACA---TTTGGTTACCTGAAACTATCAATTCAAAGTTTCA-----GCATTAC---TT-A-------TCAG--ATACA--CAATATATTT-TCTATTTTATTCAAAGGAATCAAAAGCTGT------ACGCA-TATAAAATGAGACG-----------TACCTTTTTGCTGATATCGCTGTCGCCAT---CTAGGTTGTCTATGCCGGAACACGG---AGAAGCTATGCCGGAACACGATCACGACAGTG
gi|10 : ACTATCACGATCGTGA-TACGGCATAGCTTTTCCATGTTCCGGCATAGAC-AACC--AAAATGG-CAACACCAACA-CAACA-------AAAA-CGTACGTCTCATTTTTCAATCTATATTTTGCTTTTACCA-T-CATAGTAATAATAATT-TGTATGACTG-----ATGACTGAAG--GGAACTAAC-TATA-TTGTT--GATTCCATA----TGCGTACAGCTTTTTA--TTCCTTTGAACGAAACAGAA--A------ATCAGCGATAA-ATG-TG--TCTA-TG-ATGGCGGcgtca
gi|11 : tcATTT-TCTATTTTGTTCAAAGGAATCAAAAGCTGT------ACGCA-TATGCAATCA-ACAATATAGCTAGCTAC--TTTCAGTAA-------ACAGCCATACACATTGTTATT---GCCGGAACACGG---AAAAGCTATGCAGTATCACAATCACGACAGTG
gi|11 : aGCAATAACAATG-TGTATGGCTG-----TTTACTGAAA--GTAGCTAGC-TATA-TTGTT--GATTGCATA----TGCGTACAGCTTTTGA--TTCCTTTGAACAAAATAGAA--A------ATCAGCGATAA-ATG-TATCTCTA-TG-ATGGTGTT---------CTTT-TTT------GAAAAC-GACCAAAATCAGGTAGTT-CTCTCCAT-CA-ACA-cagcgataaatgtatctctatgatggtgttcttttttgaaaacgaccaaaatcaggtagttctctccatcaaca
gi|12 : acactgtcgtgattgtgatactgcatagcttttccgtgttccgTATTTTACTTTTACCA-A-CGAAGTTATAACGATG-TGTATGGCTG-----TTTACTGAAG--GGAACTAGC-TATA-TTGTT--GATTGCATA----TACGTACAGCTTTTGA--TTCCTTTGAACAAAATAGAA--A------ATCAGCGATAA-ATG-TGTCTTTA-TG-ATGGTGTTATGATGCCAGTGT-GTTGATGGAGAGAAC-TACCTGATTTTGGTCGTT-TTC
gi|13 : ACTATCGTGATCGTGA-TACGGCATAGCTTTTCTGCGTTCCGGCATAGAC-AACC--AAGTTGG-CGACAGCAATATCAACA-------AAAA-CGTACGTCTCA-TTTTTAATCTACATTTTGCTTTTACAA-A-CGAAATAATAATATTT-TTTCTGTCTG-----T-----------------------TA-TT-TT--GATTGCATG----TG-GTAC-GTTGTTTATCTTCCTTTAA
gi|14 : tGAAACAAAAACTGTCATCACATGCAATGTACAATAA---------------TAT--TTTTGTTTGTATCATTGCCGCCAA---TTTTATTGTCTACACCAGAAAACGGGAAAAAAACGATAGCGTATAACCATCGCAACAGTG
gi|15 : ACTGTCGTGATCTTGA-TACGGCATTGGTTTTCCGTGTTCCGGCATAGAC-AACC--AAGATGG-AAACAGCGATATCAACA-------CAAA-GGTACGTCTGA-TTTTCAATCTATATTTTGCTTTTACCA-A-CGAtacattata
gi|16 : cAACGACGCAGAA--G-------TGATCGATGAGATGCTG---CTG-TG-ATTGCGGCG----------TT-TTTAAGCGAGAGAAC-TACCTGATT
gi|17 : attgtacttttttatcatTAGAC-AATC--AAGATGG-CGGCAATGACATCAATG-------AAAACGGTATGTCTCA-TTTTCAATCTATAATTTACTTTTACCA-A-TTAAGTAATGATagctgtgtttttaata
gi|18 : ACTGTCGTGATTG-GACTCCGGCACATCATTTTTG-GAACCGGCACATACTATCC--AAGATGGCCGACt
gi|19 : ACTGTCGTGATCGTGA-TACGGCATAGCTTTTCCGTGTTCCGGCATAgctat
gi|2 : cACTGTCGTGATCGTGA-TACGGCATAGCTTTTCCGTGTT---------A--AACC--AAGATGG-CGACAGCGATGTCAACA-------AAAA-AGTACGTCTCA-TTTTCGATCTATATTTTGCTTTTACCA-A-CGAAGCAATACTAATT-TGTATGGCTG-----TTTACTAAAG--GGAACTAGC-TATA-TTGTT--CATTGCATA----TGCGTACTATTTTTGA--TTCCTTTAAACAAAACAGAA--A------ATCAGCGACAA-ATG-TATCTCTA-TG-ATGGCGGTA--------AATT-TTTGATCGAGAGAAC-CACCTAATTTTGGTCATT-TCTTCAATCCA-TCA-CGATTTCTTT--TCAAATATAAACCCGAATAAAACGAAAAGTAAATACCTT-----ACCG----------------TCTCCTTGTAAAGTACCGGCTA----GATAAATTTACTATATGTATTCGTAATTCGTTATTTTCTATTTT--GCAGAGCGCACGGCGTAGACACCGTGAAACGGCATGTTTTTTCCGGAAAATAAGTCCCATATTTGGATATGGCATAGACATTAATCAAG-AAAGGATACGGTGCAGACACG--------T--TT--TATAAATAGTTTGGTAACCTGAAACTA-----TC--AGTTTTATACT-ACATTAC---TTAA-------AAAG--ATACACGCAATACA
gi|3 : cACTGTCGTGATCGTGA-TACGGCATAGCTTTTCAGTGTTCCGGCATAGAC-AACC--AAGATGG-CGACAGCGATATCAACA-------AAAA-AGTACGTCTCA-TTTTCAATCTAAATCT-GCTTTTACCA-A-CGAAGCAATACTAATT-TGTATGGTTG-----TTTACTGAAG--GGAACTAGC-TATA-TTGTT--CATTGAATAATTATGCTTACATCTTTTGA--TTCCTTTGAACAAAACAGAA--A------ATCAGCGATAA-ATG-TGTCTCTA-TG-ATGGCGGTT--------ATTT-TTTGATCGAGAGAAC-CACCTAATTTTGGTCATT-TCCTCAATCCA-ACA-CGATATGTTT--TCAAAAATAAACCCAAACAAAATGAAAA-TAAATACCTT-----ATTG----------------TCTCCCTGTAAAGTACAGGCAG----GATAAATTTACTCTATGTATTCGAAATTTGTTATTTTCTATTTT--ATGTAGCACACGGCATAGACACCGTGAAACGGCATGTACTTTCCGGAAAATAAGTCCCATATTTGGATACGGCATAGACTTTATCCAAGAAAAGGATACGGTGCAGACACGTT-TATTTT--GTAATATACA---TTTCGTTGCCTGAAACTATCAATCC-------CA---T-ACATTACTCTTT-ATCCATGGTCAA--ATACA--CGAcagaacaattgcttaattaattgttgatcaatatcacggtttgatctagttttggaccagtggtagtattttattggaaaacagaataaaacaaatatgacattaacaataaatgcgtttgtaggtgtgctgtgcagggcagggactttacctg
gi|4 : cATATTTTACTTTTATCA-A-CAAGGAAATTATAATT-TGTCTGGCTG-----TTTACT--AGTCGGAACTAAT-TATA------------------------------CTTTTGG--TTTATTTGAACACATTAGAA--A------TTC-----TAAGATGATG---ATG-TG-ATTGCAGTA--------ATTGATTTAATCGAGAGAAC-AACCTGACTTTGACTATT-TTCTAGATATA-TCA-T-ATATTTTT--TTAAATATAAACCCGAAGAAAATGACAAATAAAAGCATT-----ACTG----------------TCTTCCAGTAAAGTATAGGCTT----GATAAATATACTTTGTGTATTCGAAATCCGATA------GTTTT--GTGTTGTACATGGCATAGACACGGGGAAACGGCATACACTTTCCGGAAAATAAGTCACATATTTGGATCCGGTATGGACTTT-TTCAAGAAAATGATACGGTGCATACACG-------TT--TT--AATACAAT-TTTTGTTATCTTAAAATATAAGTT
gi|5 : ACTGTCGAGATCGTGA-TACGGCATAGCTTTTCCGTGTTCCGGCATAGAC-AGCC--AAGATGG-CGACAGCGATATCAACA-------AAAA-GGTACGTCCCA-TTTTCAATCTATACTTTGCTTTTACCA-A-CGAAGTAATATTAATG-TGTATGGCTG-----TTAACTGAAG--GAAACTAGC-TATA-TTGTT--GATTTCATA----TGCATACAGCTTTTGG--TTCCTTTGAATAAAATAGAA--A------ATCAGCGATGC-ATG-TGTGTCTA-TG-ATGGTGGT---------ATTT-TTTGATCGAGAGAAC-CACATAATTTTGGTCGTT-TCCTCAATCCA-ACA-CGGTTTCTTT--TCAAATATCAACCCAAACAAAATGAAAAGTAAATATCTT-----ACTG----------------TCGTCGTGTAAATTACAGACTG----GATAAAATTACTATATGTATTCGGAATTCGTTAATTTCTATTTT--GTGTAGCACACGGCATAGACACCGTAAAACGACATGTACTTTCCTGAAAATAAGTCACATATTTGGATACGGCATAGAA--AATCCAAGAAAATGATACGATGCAGACACGCTATTTTTT--CT--TAAACA---GTTGGTTACCTTAAACTATTAATTatttatgagaacgtttggataattaactggttgatcagttttacagtttgttctagtaatgttctggttttggaacgtcgaccatagtgatagcattatattggaaagcagaacgcgtttgtaagtgtactgtgctgttcatgtacagggca
gi|6 : tcTCATGATCGTGA-TACGGCATAGCTTTTCCGTGTTCCGGCATAGAC-AACC--AAGATGG-CGACAGCGATACCAACA-------AACG-GGTACGTCTCA-TTTTCAATCTA-GTTTT-CTTTTACCA-A-CGAAATAATACTAATT-TGTATAGGTG-----TTTACTGAAG--GAAACTAGT-TATA-TTGTT--GATTGCATA----TGCGTACATCTTTTGA--TTAGTTTGAACAAACCAGGA--A------ATCAGCGATAA-ATG-TGTCTCTA-TG-ACGGCGGTA--------ATAT-TTTGATCGAAAAAAAACACCTTATTTTGGTCATT-TCCTCAATCCA-ACA-CGATTTATTT--TCAAATATAAACCCAAACAAAATGAAAAGTAAATACCTT-----ACTG----------------TCGCCGTGTAAATTACAGGCTG----GATAAAATTACTATATGTGTTCGGAATTCGTTATTTTCTCTTTT--GTGTAGCAGACGGCATAGACACCTTGAAACGACATGTACTTTCCGGAAAATAAGTCCAATATTTGGATACGGTATAGACTTTATCAAAGAAAATGAAACAGTGCAGACACG----TTTTT--AT--TATACA---TTTGGTAACCTGAAACTATC
gi|7 : tcatttCCTTCCCTTG--CTGGTATAGAC-AACA--AAGATAG-CGACCCCAAATTCAACAAAAACAAAAAA-GATA--TCTCT-TTTCCGATC--TGTTTTACTTTTACCA-A-T------ATAGTAATTATGTATGGTTGTGTGATTTACC------GGGACATGC--ATA-TCCTTGCGATTTTATA----TGTG---AACTTGTGT--TGTCTCTGAAAAAAACAACATTAT-----ACCGGTGATAA-ATG-T-TCACGACTGCATGACGGCA--------TTCT-TTT--------AAAT-C----GACTTTGCT-ATT-TTTTTGATTTATAGA--GA--TATTTA-CCTAATATAAACCTGTCTAAAATGGAA--TCAA-ACCTTTATAAACTGTTTAAAATAGAGCGTTTCTCCCTATAAAATTCAAGCTG----AATAG------TCTGTATACTCGAAATTTA-TATATTCTATTTT--A-ATGGGTCACGGTATTGG----GT---ACGGTATCTATTTTCGGGAAAATAAAACTGAAATTTGGAT
gi|8 : GTCCCGGTATAGAG-AATCTGAAG--GG-CGGCAATGA------CA-------AAGC-AATGCGTC--A-CTTCTAATCTGTGTTTTATTTTTTCCATATC--AGTAATA-TAATT------GGTGA-----TTAACTAAAA--GGAAA-GGCATATAATTGT---GATTGCATA----TGCTAACATCCTTTGT--TTTCTCTTAATAAAATAAAA--AAAACCCAACAGCGATCA-ACA-GGACTGCA-TG-ACGGTCATT--------ATTG-TTGAATCAATAGAAG-AACCAGACATTGGT-ATTGTCCTCAGGCT--ACAGTGATCTATGT--T------TTAACCTGCCTTGAATAGATAGTTTATGCACT-----CCTG----------------CCTCCCTGGTGAGTCTAATCCGAGTAGATGAATTTATTctggtgcttggttctgacttaaaaaaggaaaggg
gi|9 : TGTATTCAAAATTCGTTATTTTCTATTTTTTGTGTAGAACAAGGCATAGACACCGTGAAACAGCATGTACTTTCTGGAAAA-AATGCCAATATTTGATTTCGGCATAGACTTTATTCAAGAAAAGGATACGATGCAGACATGTT-TTCTTTG-TT--TATACA---TTTGGTTACCTCAAACTATCAATTC--AGTTTTA---TAGCATTAC---TT-A-------TCAGATATACA--CAGAACATTTGCCTA--ATATT--AAGTAATTGATAGGTTT------A-ACA-TATcgtgaatatactcttttattatt
blockSeqs : C T TG C AAAACAA C T T T A A A TGTGA G TC A A GC ATTA G TC TT AAACCC G C T C C ATGATGCCAG A G A A G C T GT T C A T G TATAA TTTAAAATAGAGCGTT AGTA A TT C A CTATT GT AA TAG A TACT TCT ATCCATGG AT CG G T C A CATCAC C A C ACAATATAGCTAGC . G A TATCAT ACA TAC GAA A
blockSeqs : . . . . . . . . . G A . . G . . . . . G . . T G A T . . AA . A . C . A . C A G . C A . . . C . C T TTTA T . AT A TA . AA . . . . . A . T . A . . T T . . . . C
blockSeqs : . . . . . . . . . G A . . G . . . . . G . . . . . T . . TA . G . C . A . C A T . G G . . . T . C T TTTT G . . . T . A . . G . . .
blockSeqs : . . . . . . . . . G A . . A . . . . . G . . . . . T . . AA . G . C . G . T T C . C G . . . A . C T T T . .
blockSeqs : . . . . . . . . . T A . . G . . . . . A . . . . . T . . AA . A . T . A . C T A . C G . . . A . A T . C . .
blockSeqs : . . . . . . . . . G C . . G . . . . . T . . . . . T . . AT . G . C . A . C C A . T . . . . C . G . . A . .
blockSeqs : . . . . . . . . . G C . . G . . . . . G . . . . . T . . TA . G . C . G . . . A . T . . . . . A
blockSeqs : . . . . . . . . . A A . . A . . . . . T . . . . . A . . C . A . . . A .
blockSeqs : . . . . . . . . . G T . . . . . . . . A . . . . . . . . G . . . . .
blockSeqs : . . . . . . . . G C . . . . . . . . T . . . . . . . . A . . .
blockSeqs : . . . . . . G . . . . . . . . . . . . . . . . .
blockSeqs : . . . .
blockSeqCons : ** N**
originalCons : ACTGTCGTGATCGTGA-TACGGCATAGCTTTTCCGTGTTCCGGCATAGAC-AACC--AAGATGG-CGACAGCGATATCAACA-------AAAA-GGTACGTCTCA-TTTTCAATCTATATTTTGCTTTTACCA-A-CGAAGTAATANTAATT-TGTATGGCTG-----TTTACTGAAG--GGAACTAGC-TATA-TTGTT--GATTGCATA----TGCGTACAGCTTTTGA--TTCCTTTGAACAAAACAGAA--A------ATCAGCGATAA-ATG-TGTCTCTA-TG-ATGGCGGTA--------ATTT-TTTGATCGAGAGAAC-CACCTGATTTTGGTCATT-TCCTCGATCCA-ACA-CGATTTNTTT--TCAAATATAAACCCGAACAAAATGAAAAGTAAATACCTT-----ACTG----------------TCTCCCTGTAAAGTACAGGCTG----GATAAATTTACTNTATGTATTCGAAATTCGTTATTTTCTATTTT--GTGTAGCACACGGCATAGACACCGTGAAACGGCATGTACTTTCCGGAAAATAAGTCCNATATTTGGATACGGCATAGACTTTATCCAAGAAAAGGATACGGTGCAGACACGTT-TTTTTT--TT--TATACA---TTTGGTTACCTGAAACTATCAATTC--AGTTTCA---T-GCATTAC---TT-A-------TCAG--ATACA--CAATACATTT-TCTATTTTATTCAAAGGAATCGAAAGCTGT------ACGCA-TATACAATNA-ACG-----------TAC--TTTCGNTNATATCGCTGCCGCCAT---CTTTGTTGTCTACGCCGGAACACGG---AAAAGCTATGCCGTATCACGATCGCGACAGTG
finalCons : ACTGTCGTGATCGTGA-TACGGCATAGCTTTTCCGTGTTCCGGCATAGAC-AACC--AAGATGG-CGACAGCGATATCAACA-------AAAA-GGTACGTCTCA-TTTTCAATCTATATTTTGCTTTTACCA-A-CGAAGTAATANTAATT-TGTATGGCTG-----TTTACTGAAG--GGAACTAGC-TATA-TTGTT--GATTGCATA----TGCGTACAGCTTTTGA--TTCCTTTGAACAAAACAGAA--A------ATCAGCGATAA-ATG-TGTCTCTA-TG-ATGGCGGTA--------ATTT-TTTGATCGAGAGAAC-CACCTGATTTTGGTCATT-TCCTCGATCCA-ACA-CGATTTNTTT--TCAAATATAAACCCGAACAAAATGAAAAGTAAATACCTT-----ACTG----------------TCTCCCTGTAAAGTACAGGCTG----GATAAATTTACTNTATGTATTCGAAATTCGTTATTTTCTATTTT--GTGTAGCACACGGCATAGACACCGTGAAACGGCATGTACTTTCCGGAAAATAAGTCCNATATTTGGATACGGCATAGACTTTATCCAAGAAAAGGATACGGTGCAGACACGTT-TTTTTTN--T--TATACA---TTTGGTTACCTGAAACTATCAATTC--AGTTTCA---T-GCATTAC---TT-A-------TCAG--ATACA--CAATACATTT-TCTATTTTATTCAAAGGAATCGAAAGCTGT------ACGCA-TATACAATNA-ACG-----------TAC--TTTCGNTNATATCGCTGCCGCCAT---CTTTGTTGTCTACGCCGGAACACGG---AAAAGCTATGCCGTATCACGATCGCGACAGTG
Alignments
lowQualScore : 1111111 111111 2222222222 11 11111 3333333333333333 1111 2222222222 111 111 33333 111 333333333 11 11 1 222222 1 888888888888888 11 111111 222 111 222
lowQualScore : 4 3 44 3 0 1111111 3 3 3 3 2 4 3 88888 3 44 3 3 44 7777 1 44 44 222222 6 6 5 3 3 2222222222 3 3 3 0 4 4 4 0 4 44 2 1 11 0 1 1 0 22222 3333333333333333 0000 0 1 0 0 66 0 1 1 0 0 6666666666 77 777 0 777 00000 777 333333333 33 33 3 7 6 2 888888 6 0 1 666666666666666 88 0 1 1 111111 333 000 333 3 0
lowQualScore : . . .. . . ....... . . . . . . . ..... . .. . . .. .... . .. .. ...... . . . . . .......... . . . . . . . . . .. . . .. . . . . ..... ................ .... . . . . .. . . . . . .......... .. ... . ... ..... ... ......... .. .. . . . . ...... . . . ............... .. . . . ...... ... ... ... . .
lowQualScore : 0 3 66 3 5 8888888 6 6 1 1 1 0 3 33333 1 66 3 3 66 1111 0 66 66 999999 7 7 4 3 3 9999999999 6 5 6 1 1 0 4 1 4 77 4 0 99 2 1 4 4 55555 1111111111111111 6666 5 0 4 4 99 2 0 7 7 1 6666666666 99 999 7 000 88888 555 555555555 88 88 3 3 7 0 888888 5 0 0 000000000000000 33 7 0 0 000000 333 000 333 7 7
consensus : ACTGTCGTGATCGTGA-TACGGCATAGCTTTTCCGTGTTCCGGCATAGAC-AACC--AAGATGG-CGACAGCGATATCAACA-------AAAA-GGTACGTCTCA-TTTTCAATCTATATTTTGCTTTTACCA-A-CGAAGTAATANTAATT-TGTATGGCTG-----TTTACTGAAG--GGAACTAGC-TATA-TTGTT--GATTGCATA----TGCGTACAGCTTTTGA--TTCCTTTGAACAAAACAGAA--A------ATCAGCGATAA-ATG-TGTCTCTA-TG-ATGGCGGTA--------ATTT-TTTGATCGAGAGAAC-CACCTGATTTTGGTCATT-TCCTCGATCCA-ACA-CGATTTNTTT--TCAAATATAAACCCGAACAAAATGAAAAGTAAATACCTT-----ACTG----------------TCTCCCTGTAAAGTACAGGCTG----GATAAATTTACTNTATGTATTCGAAATTCGTTATTTTCTATTTT--GTGTAGCACACGGCATAGACACCGTGAAACGGCATGTACTTTCCGGAAAATAAGTCCNATATTTGGATACGGCATAGACTTTATCCAAGAAAAGGATACGGTGCAGACACGTT-TTTTTT--NT--TATACA---TTTGGTTACCTGAAACTATCAATTC--AGTTTCA---T-GCATTAC---TT-A-------TCAG--ATACA--CAATACATTT-TCTATTTTATTCAAAGGAATCGAAAGCTGT------ACGCA-TATACAATNA-ACG-----------TAC--TTTCGNTNATATCGCTGCCGCCAT---CTTTGTTGTCTACGCCGGAACACGG---AAAAGCTATGCCGTATCACGATCGCGACAGTG
Reference ( family-1899 ) : ACTGTCGTGATCGTGA-TACGGCATAGCTTTTCCGTGTTCCGGCATAGAC-AACC--AAGATGG-CGACAGCGATATCAACA-------AAAA-GGTACGTCTCA-TTTTCAATCTATATTTTGCTTTTACCA-A-CGAAGTAATANTAATT-TGTATGGCTG-----TTTACTGAAG--GGAACTAGC-TATA-TTGTT--GATTGCATA----TGCGTACAGCTTTTGA--TTCCTTTGAACAAAACAGAA--A------ATCAGCGATAA-ATG-TGTCTCTA-TG-ATGGCGGTA--------ATTT-TTTGATCGAGAGAAC-CACCTGATTTTGGTCATT-TCCTCGATCCA-ACA-CGATTTNTTT--TCAAATATAAACCCGAACAAAATGAAAAGTAAATACCTT-----ACTG----------------TCTCCCTGTAAAGTACAGGCTG----GATAAATTTACTNTATGTATTCGAAATTCGTTATTTTCTATTTT--GTGTAGCACACGGCATAGACACCGTGAAACGGCATGTACTTTCCGGAAAATAAGTCCNATATTTGGATACGGCATAGACTTTATCCAAGAAAAGGATACGGTGCAGACACGTT-TTTTTT--NT--TATACA---TTTGGTTACCTGAAACTATCAATTC--AGTTTCA---T-GCATTAC---TT-A-------TCAG--ATACA--CAATACATTT-TCTATTTTATTCAAAGGAATCGAAAGCTGT------ACGCA-TATACAATNA-ACG-----------TAC--TTTCGNTNATATCGCTGCCGCCAT---CTTTGTTGTCTACGCCGGAACACGG---AAAAGCTATGCCGTATCACGATCGCGACAGTG
gi|1 : ACTGTCGTGATCGTGA-TACGGCATACCTTTTCCGTGTTCCGGCATAGAC-AACC--AAAATGG-CGACAGCGATATCAACA-------AACA-GGTATGTCTCA-TTTTCAATCTATATTTTGCTTTTACCA-A-CGAAGTAATATTAATT-TGTATGGCTG-----TTTACTGAAG--GCAACTAGC-TATA-TTGTT--GATTGCATA----TGCGTACAGCTTTTGA--TTCCTTTGAATAAAATAGAA--A------ATCAGCGATAC-ATG-TGTCTCTC-TG-ATGGCGGTA--------TTTT-TTTGATCGAGGGAAC-CACCGGATGTGGGTCATT-TTCTCTATCCA-ACA-CGATTTTTTTTGTTAAATATAAACTCGAATAAAATGAAAAGTAAATACCTT-----ACTG----------------TCTCTCTGTAAAGTGCAGACTG----GATAAGTTTACTCTTTGTATTCAAAATTCGTTATTTTCTATTTT--GTGTAGTACACGGCATAGACACCGTGAAAAGGCATGTACTTTCCGAAAAATAAGCCCAATATTTATATACGGCATAGACTTTATCAAAGAAAAGGAAACGGTGCAGACACGTT-TTTCTTTGTT--TATACA---TTTGGTTACCTGAAACTATCAATTCAAAGTTTCA-----GCATTAC---TT-A-------TCAG--ATACA--CAATATATTT-TCTATTTTATTCAAAGGAATCAAAAGCTGT------ACGCA-TATAAAATGAGACG-----------TACCTTTTTGCTGATATCGCTGTCGCCAT---CTAGGTTGTCTATGCCGGAACACGG---AGAAGCTATGCCGGAACACGATCACGACAGTG
gi|10 : ACTATCACGATCGTGA-TACGGCATAGCTTTTCCATGTTCCGGCATAGAC-AACC--AAAATGG-CAACACCAACA-CAACA-------AAAA-CGTACGTCTCATTTTTCAATCTATATTTTGCTTTTACCA-T-CATAGTAATAATAATT-TGTATGACTG-----ATGACTGAAG--GGAACTAAC-TATA-TTGTT--GATTCCATA----TGCGTACAGCTTTTTA--TTCCTTTGAACGAAACAGAA--A------ATCAGCGATAA-ATG-TG--TCTA-TG-ATGGCGGcgtca
gi|11 : tcATTT-TCTATTTTGTTCAAAGGAATCAAAAGCTGT------ACGCA-TATGCAATCA-ACAATATAGCTAGCTAC--TTTCAGTAA-------ACAGCCATACACATTGTTATT---GCCGGAACACGG---AAAAGCTATGCAGTATCACAATCACGACAGTG
gi|11 : aGCAATAACAATG-TGTATGGCTG-----TTTACTGAAA--GTAGCTAGC-TATA-TTGTT--GATTGCATA----TGCGTACAGCTTTTGA--TTCCTTTGAACAAAATAGAA--A------ATCAGCGATAA-ATG-TATCTCTA-TG-ATGGTGTT---------CTTT-TTT------GAAAAC-GACCAAAATCAGGTAGTT-CTCTCCAT-CA-ACA-cagcgataaatgtatctctatgatggtgttcttttttgaaaacgaccaaaatcaggtagttctctccatcaaca
gi|12 : acactgtcgtgattgtgatactgcatagcttttccgtgttccgTATTTTACTTTTACCA-A-CGAAGTTATAACGATG-TGTATGGCTG-----TTTACTGAAG--GGAACTAGC-TATA-TTGTT--GATTGCATA----TACGTACAGCTTTTGA--TTCCTTTGAACAAAATAGAA--A------ATCAGCGATAA-ATG-TGTCTTTA-TG-ATGGTGTTATGATGCCAGTGT-GTTGATGGAGAGAAC-TACCTGATTTTGGTCGTT-TTC
gi|13 : ACTATCGTGATCGTGA-TACGGCATAGCTTTTCTGCGTTCCGGCATAGAC-AACC--AAGTTGG-CGACAGCAATATCAACA-------AAAA-CGTACGTCTCA-TTTTTAATCTACATTTTGCTTTTACAA-A-CGAAATAATAATATTT-TTTCTGTCTG-----T-----------------------TA-TT-TT--GATTGCATG----TG-GTAC-GTTGTTTATCTTCCTTTAA
gi|14 : tGAAACAAAAACTGTCATCACATGCAATGTACAATAA---------------TAT--TTTTGTTTGTATCATTGCCGCCAA---TTTTATTGTCTACACCAGAAAACGGGAAAAAAACGATAGCGTATAACCATCGCAACAGTG
gi|15 : ACTGTCGTGATCTTGA-TACGGCATTGGTTTTCCGTGTTCCGGCATAGAC-AACC--AAGATGG-AAACAGCGATATCAACA-------CAAA-GGTACGTCTGA-TTTTCAATCTATATTTTGCTTTTACCA-A-CGAtacattata
gi|16 : cAACGACGCAGAA--G-------TGATCGATGAGATGCTG---CTG-TG-ATTGCGGCG----------TT-TTTAAGCGAGAGAAC-TACCTGATT
gi|17 : attgtacttttttatcatTAGAC-AATC--AAGATGG-CGGCAATGACATCAATG-------AAAACGGTATGTCTCA-TTTTCAATCTATAATTTACTTTTACCA-A-TTAAGTAATGATagctgtgtttttaata
gi|18 : ACTGTCGTGATTG-GACTCCGGCACATCATTTTTG-GAACCGGCACATACTATCC--AAGATGGCCGACt
gi|19 : ACTGTCGTGATCGTGA-TACGGCATAGCTTTTCCGTGTTCCGGCATAgctat
gi|2 : cACTGTCGTGATCGTGA-TACGGCATAGCTTTTCCGTGTT---------A--AACC--AAGATGG-CGACAGCGATGTCAACA-------AAAA-AGTACGTCTCA-TTTTCGATCTATATTTTGCTTTTACCA-A-CGAAGCAATACTAATT-TGTATGGCTG-----TTTACTAAAG--GGAACTAGC-TATA-TTGTT--CATTGCATA----TGCGTACTATTTTTGA--TTCCTTTAAACAAAACAGAA--A------ATCAGCGACAA-ATG-TATCTCTA-TG-ATGGCGGTA--------AATT-TTTGATCGAGAGAAC-CACCTAATTTTGGTCATT-TCTTCAATCCA-TCA-CGATTTCTTT--TCAAATATAAACCCGAATAAAACGAAAAGTAAATACCTT-----ACCG----------------TCTCCTTGTAAAGTACCGGCTA----GATAAATTTACTATATGTATTCGTAATTCGTTATTTTCTATTTT--GCAGAGCGCACGGCGTAGACACCGTGAAACGGCATGTTTTTTCCGGAAAATAAGTCCCATATTTGGATATGGCATAGACATTAATCAAG-AAAGGATACGGTGCAGACACGTT----------T--TATAAATAGTTTGGTAACCTGAAACTA-----TC--AGTTTTATACT-ACATTAC---TTAA-------AAAG--ATACACGCAATACA
gi|3 : cACTGTCGTGATCGTGA-TACGGCATAGCTTTTCAGTGTTCCGGCATAGAC-AACC--AAGATGG-CGACAGCGATATCAACA-------AAAA-AGTACGTCTCA-TTTTCAATCTAAATCT-GCTTTTACCA-A-CGAAGCAATACTAATT-TGTATGGTTG-----TTTACTGAAG--GGAACTAGC-TATA-TTGTT--CATTGAATAATTATGCTTACATCTTTTGA--TTCCTTTGAACAAAACAGAA--A------ATCAGCGATAA-ATG-TGTCTCTA-TG-ATGGCGGTT--------ATTT-TTTGATCGAGAGAAC-CACCTAATTTTGGTCATT-TCCTCAATCCA-ACA-CGATATGTTT--TCAAAAATAAACCCAAACAAAATGAAAA-TAAATACCTT-----ATTG----------------TCTCCCTGTAAAGTACAGGCAG----GATAAATTTACTCTATGTATTCGAAATTTGTTATTTTCTATTTT--ATGTAGCACACGGCATAGACACCGTGAAACGGCATGTACTTTCCGGAAAATAAGTCCCATATTTGGATACGGCATAGACTTTATCCAAGAAAAGGATACGGTGCAGACACGTT-TATTTT--GTAATATACA---TTTCGTTGCCTGAAACTATCAATCC-------CA---T-ACATTACTCTTT-ATCCATGGTCAA--ATACA--CGAcagaacaattgcttaattaattgttgatcaatatcacggtttgatctagttttggaccagtggtagtattttattggaaaacagaataaaacaaatatgacattaacaataaatgcgtttgtaggtgtgctgtgcagggcagggactttacctg
gi|4 : cATATTTTACTTTTATCA-A-CAAGGAAATTATAATT-TGTCTGGCTG-----TTTACT--AGTCGGAACTAAT-TATA------------------------------CTTTTGG--TTTATTTGAACACATTAGAA--A------TTC-----TAAGATGATG---ATG-TG-ATTGCAGTA--------ATTGATTTAATCGAGAGAAC-AACCTGACTTTGACTATT-TTCTAGATATA-TCA-T-ATATTTTT--TTAAATATAAACCCGAAGAAAATGACAAATAAAAGCATT-----ACTG----------------TCTTCCAGTAAAGTATAGGCTT----GATAAATATACTTTGTGTATTCGAAATCCGATA------GTTTT--GTGTTGTACATGGCATAGACACGGGGAAACGGCATACACTTTCCGGAAAATAAGTCACATATTTGGATCCGGTATGGACTTT-TTCAAGAAAATGATACGGTGCATACACGTT-T--------T--AATACAAT-TTTTGTTATCTTAAAATATAAGTT
gi|5 : ACTGTCGAGATCGTGA-TACGGCATAGCTTTTCCGTGTTCCGGCATAGAC-AGCC--AAGATGG-CGACAGCGATATCAACA-------AAAA-GGTACGTCCCA-TTTTCAATCTATACTTTGCTTTTACCA-A-CGAAGTAATATTAATG-TGTATGGCTG-----TTAACTGAAG--GAAACTAGC-TATA-TTGTT--GATTTCATA----TGCATACAGCTTTTGG--TTCCTTTGAATAAAATAGAA--A------ATCAGCGATGC-ATG-TGTGTCTA-TG-ATGGTGGT---------ATTT-TTTGATCGAGAGAAC-CACATAATTTTGGTCGTT-TCCTCAATCCA-ACA-CGGTTTCTTT--TCAAATATCAACCCAAACAAAATGAAAAGTAAATATCTT-----ACTG----------------TCGTCGTGTAAATTACAGACTG----GATAAAATTACTATATGTATTCGGAATTCGTTAATTTCTATTTT--GTGTAGCACACGGCATAGACACCGTAAAACGACATGTACTTTCCTGAAAATAAGTCACATATTTGGATACGGCATAGAA--AATCCAAGAAAATGATACGATGCAGACACGCTATTTTTT--CT--TAAACA---GTTGGTTACCTTAAACTATTAATTatttatgagaacgtttggataattaactggttgatcagttttacagtttgttctagtaatgttctggttttggaacgtcgaccatagtgatagcattatattggaaagcagaacgcgtttgtaagtgtactgtgctgttcatgtacagggca
gi|6 : tcTCATGATCGTGA-TACGGCATAGCTTTTCCGTGTTCCGGCATAGAC-AACC--AAGATGG-CGACAGCGATACCAACA-------AACG-GGTACGTCTCA-TTTTCAATCTA-GTTTT-CTTTTACCA-A-CGAAATAATACTAATT-TGTATAGGTG-----TTTACTGAAG--GAAACTAGT-TATA-TTGTT--GATTGCATA----TGCGTACATCTTTTGA--TTAGTTTGAACAAACCAGGA--A------ATCAGCGATAA-ATG-TGTCTCTA-TG-ACGGCGGTA--------ATAT-TTTGATCGAAAAAAAACACCTTATTTTGGTCATT-TCCTCAATCCA-ACA-CGATTTATTT--TCAAATATAAACCCAAACAAAATGAAAAGTAAATACCTT-----ACTG----------------TCGCCGTGTAAATTACAGGCTG----GATAAAATTACTATATGTGTTCGGAATTCGTTATTTTCTCTTTT--GTGTAGCAGACGGCATAGACACCTTGAAACGACATGTACTTTCCGGAAAATAAGTCCAATATTTGGATACGGTATAGACTTTATCAAAGAAAATGAAACAGTGCAGACACG----TTTTT--AT--TATACA---TTTGGTAACCTGAAACTATC
gi|7 : tcatttCCTTCCCTTG--CTGGTATAGAC-AACA--AAGATAG-CGACCCCAAATTCAACAAAAACAAAAAA-GATA--TCTCT-TTTCCGATC--TGTTTTACTTTTACCA-A-T------ATAGTAATTATGTATGGTTGTGTGATTTACC------GGGACATGC--ATA-TCCTTGCGATTTTATA----TGTG---AACTTGTGT--TGTCTCTGAAAAAAACAACATTAT-----ACCGGTGATAA-ATG-T-TCACGACTGCATGACGGCA--------TTCT-TTT--------AAAT-C----GACTTTGCT-ATT-TTTTTGATTTATAGA--GA--TATTTA-CCTAATATAAACCTGTCTAAAATGGAA--TCAA-ACCTTTATAAACTGTTTAAAATAGAGCGTTTCTCCCTATAAAATTCAAGCTG----AATAG------TCTGTATACTCGAAATTTA-TATATTCTATTTT--A-ATGGGTCACGGTATTGG----GT---ACGGTATCTATTTTCGGGAAAATAAAACTGAAATTTGGAT
gi|8 : GTCCCGGTATAGAG-AATCTGAAG--GG-CGGCAATGA------CA-------AAGC-AATGCGTC--A-CTTCTAATCTGTGTTTTATTTTTTCCATATC--AGTAATA-TAATT------GGTGA-----TTAACTAAAA--GGAAA-GGCATATAATTGT---GATTGCATA----TGCTAACATCCTTTGT--TTTCTCTTAATAAAATAAAA--AAAACCCAACAGCGATCA-ACA-GGACTGCA-TG-ACGGTCATT--------ATTG-TTGAATCAATAGAAG-AACCAGACATTGGT-ATTGTCCTCAGGCT--ACAGTGATCTATGT--T------TTAACCTGCCTTGAATAGATAGTTTATGCACT-----CCTG----------------CCTCCCTGGTGAGTCTAATCCGAGTAGATGAATTTATTctggtgcttggttctgacttaaaaaaggaaaggg
gi|9 : TGTATTCAAAATTCGTTATTTTCTATTTTTTGTGTAGAACAAGGCATAGACACCGTGAAACAGCATGTACTTTCTGGAAAA-AATGCCAATATTTGATTTCGGCATAGACTTTATTCAAGAAAAGGATACGATGCAGACATGTT-TTCTTTG-TT--TATACA---TTTGGTTACCTCAAACTATCAATTC--AGTTTTA---TAGCATTAC---TT-A-------TCAGATATACA--CAGAACATTTGCCTA--ATATT--AAGTAATTGATAGGTTT------A-ACA-TATcgtgaatatactcttttattatt