lowQualScore : 111111111111111111111 1111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 111111111111111111111111111111111111111
lowQualScore : 99999999999 11 55555555555555555 444444444444444444444 22222 333 2 222222222 1 11 1111 5555555555555 11111 111 111 2 11111 1111 33 11111111 4444444444444 111111111 1 111111 444444444444444444444 88888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888 3333 33333 1 1 1 22 111 2 111 0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 1 11111 1 1111111 000000000000000000000000000000000000000 111 33333333333333333333 1111 2222222222 111111 1 3333333333333 222222 111 22222222 11 11 333333333 11 11 22222222 666666666666666666666666666666666666666 1 2 1 22222 444444444444 2 2222
lowQualScore : 3 2 55555555555 4 88 11111111111111111 2 4 999999999999999999999 99999 555 4 4 4 3 0 4 4 2 3 99 3 2 999999999 3 5 1 6 6 6 1 22 8888 77 0000000000000 888 66666 77 111 111 1 5 777 0 11111 0000 2 5 66 88888888 5555555555555 777777777 55 4 8 5 2 1 3 666666 8 000000000000000000000 7 0 6 55555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555 8 0 8 8 33 7777 3 33333 3 6 3 99 8 6 2 66 99 6 888 0 6 777 4444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444 3 3 9 77 8 77 77 5 2 11111 0 0 5 5 0 1 5 1 1 5 5 4 77 0 8888888 6 6 888888888888888888888888888888888888888 5 4 2 6 1 555 0 2 8 44444444444444444444 4 777 5 4 66 5 4 0000 5 9999999999 0 666666 5 5 5555555555555 777777 777 99999999 11 0 8 11 222222222 4 1 22 11 3 44444444 6 2 99 6 5 999999999999999999999999999999999999999 3 0 0 2 1 7 3 6 1 6 22222 3 1 8 999999999999 1 1111
lowQualScore : . . ........... . .. ................. . . ..................... ..... ... . . . . . . . . . .. . . ......... . . . . . . . .. .... .. ............. ... ..... .. ... ... . . ... . ..... .... . . .. ........ ............. ......... .. . . . . . . ...... . ..................... . . . ............................................................................................ . . . . .. .... . ..... . . . .. . . . .. .. . ... . . ... ....................................................................................................... . . . .. . .. .. . . ..... . . . . . . . . . . . . .. . ....... . . ....................................... . . . . . ... . . . .................... . ... . . .. . . .... . .......... . ...... . . ............. ...... ... ........ .. . . .. ......... . . .. .. . ........ . . .. . . ....................................... . . . . . . . . . . ..... . . . ............ . ....
lowQualScore : 0 5 00000000000 0 00 55555555555555555 5 0 555555555555555555555 55555 000 0 0 0 0 0 0 0 5 0 22 7 5 222222222 3 0 0 7 7 7 2 00 3333 99 9999999999999 000 00000 99 333 777 2 0 888 9 33333 6666 0 0 66 11111111 1111111111111 888888888 00 4 9 0 6 4 4 222222 0 333333333333333333333 0 7 7 99999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999 0 6 0 0 66 5555 3 33333 3 7 3 22 3 7 7 00 88 7 333 0 7 555 0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 3 0 8 00 0 99 99 7 3 00000 6 7 7 1 0 6 7 4 4 1 7 9 99 7 1111111 6 6 555555555555555555555555555555555555555 4 4 5 7 0 333 2 5 8 00000000000000000000 8 888 2 4 22 4 4 6666 0 6666666666 1 444444 9 5 3333333333333 555555 555 00000000 00 8 0 00 000000000 0 0 00 00 2 22222222 7 5 22 0 0 888888888888888888888888888888888888888 5 3 5 5 0 3 3 0 5 7 88888 3 8 0 222222222222 2 2222
consensus : ATNTTNACCATTTGATCGATTATTATAAACGAGTGATAAACANGTGATAAACGTAGTTTACTCAACGTATAATNTTTACNCAATTTAACATTTGATTTTAATTCATGTTAAGTGGCTTGTAAATAAGTGTTACCGTGNGTTATNTNGTAATACTACAAAAAAANATTTCTCGCGATTATNTACGTGCANATGTATCATATATAAATTTTCATTGGCGTAGGAGCNTTTTAATTACTTGGGAGGCNAACCTGGCGAGAGAGTGTAGGAGAGAGAATCCCCTCCCAT------AGNTGAGGGTACGGG-GG-CCT-CCCCCGGAANAT---CTTGAT--ATCTTAAA-N-CCAAA----GC--TGT----TGCA--T-TTAGTGG--AGTT-TTA-GG---ATAAAGATA----TGATT----GTTA-TTTACTCCA--------ATATTTT----G-TG--A--TTTA---------AACG-TTT-T-A-TNAAGAAA-AAAGNCTG--AA--ATGTATT-AAA---AAAC--TN--AC---T--TCGACCGGGTTTT-AAACCCG--TCAC------CTTATGCACTGGGAGCAAGNCG--TGAGAG---G-AGAT-TG-G-GGGTGTT-A------TTTAT-TGGG--CT----CCTCC-CCCTG-CA-AGAAAC---GATAT-----TTAAAA-AA-CAAA-AATGC--ATT-CTAG-TAGATTTTAAT-TGG-AAA---ATGGTTGTTATTTA-TACCAGTTTG---TGGGGTCTCTGCTGGTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGA-GAGAGTTTCCCTTNCTGNNGGAG-GTAAGAG--GGA--CC-TCCCCCGGAAAATCTTGATATCTTAAAA-GCCAAATGATGCATTATAGCGAGTTTTAT-AGTGTATT--AGGGGAAA------GCTGGTNGTTACTTA-TC---------CA------CGG-------T-------GACNTTTAAACG-TTTTTATTAAGAAAGAAAAACTGTAAGATGTATTAAACAGGAACTTTCACTGTTTCACTGGGTTGTAAA-CCCAATTCACTGCAAACTAATTAAGAGGAAGAAGGTGGNAAGCGGGTTTGTGTCGATGCTGCGGCCTCCCCCGGAAAGTAACATTGATATAAT-GTTAAAACANCAAATGCTG---CATT-CTAGTNAGCTTTT-AGGATAAAAATATGGTT----GTCATTT-ACTCCAGAT-ATTTTTTGTATTTTG------TGNCTTTTAAACGTATTTTATCAAACTTTT-------TTTGGAGTG-----AGGGGTG---GGCAGAGTATATG--------CTGCCCCTCC--ACCTTAATATT-GGGTG--GGG---------GAGGAACATACGCCTTTGTTTTTACGCCACTTTCTGANGCTTCGCCAGTTCGAATTGCAGCCGGCAGACACTACATCCAAAAAGGCG--TAGTGACGCACTGTGCATATACATAAATTG--------ACAAA-ACCTTAAATTTTGTGCGAAAAGTATTTATACCCGACA--GAAAATTACCAAGTTATAAATTCAAAA---------TATAAAAA-ATCT-AAAAAAAAT-------CAATAACTATAATCGCAATATTTATATCGTCTTAATTTACCANTTTGAATAATTGGCATTATGTGCCAGCGTGTTTTATAAANCTTTAACTTTCTAATACGATGTAGATTATA-TTAAAAAGTT-AATAGATAACACATTGAAAACGACATA-TTN-----------ATCTATCTTAAATATAAGGGGGGTCAATATACGTT----TCCGTAATTA
Reference ( gi|1 ) : ATATTGACCATTTGATCGATTATT-----------ATAAACAAGTGATAAATATA--TTA---AACGT----TGTTTACTCAATTTAA----------------AT---AAGTG--TT-TAAA---GTATTACCGTGTGTTATTTTGTAATATTACAAAAAAAAATT-CTCGCAATTATATACATGCATATGTATCATATATAAATTTTCATTGGCGTAGGAGCCTTTTAATTACTTGGGAAGCAAACCTGGCGAGAGAGTGTAGGAGAAAGAATCCCCTCCCAT------AGTTGAGGATACGGG-GG-CCT-CCATCGGATCAT---TTTGAT--ATCTTAAT-T-CCAA-----GC--TGT----TGCA--T-TCAATGG--AGTTGTTA-AG---ATAAAGATA----TGATT----GTCA-TA-ACTCCA--------ATATTTT----G-TG--A--TTTA---------AATA-TTT-T-A-TAAAGAAA-AAAGTCTG--AA--ATGTATT-AAA---AAAC--TT--AC---T--TCGACCGGGTTTT-AAACCCG--TCAC------CTTATGCACTGGGAGCAAGCCG--TGAGAG---G-AGATCTGGG-GGGTGTT-A------TTTAT-TGGA--CT----TCTCC-CCCTG-CA-AAAAA----GGTAT-----TTAAAA-AA-CAAA-AATGC--AAT-CAAG-AAGATTTTAAT-TGG-AAA---ATGGTTGTT-TTTA-TACCAGTTTG---TGGGGTCTCTGCTGGTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCGA-GAGAGTTTCCCTTTCTGTAGGAG-GTAAGAG--GGA--CC-TCCCCTGGAAAATCTTGATATCTTAAAA-GTCAAATGATACATTATAGCAAGTTTTAT-AGTGTATT--AGGGGAAA------GTTGGTGGTTACTT-------------CA------CGG-------T-------GACATTTAAACG-TTTTTATTAAGAAAGAAAAACTGTAAGATGTATTAAACCGGAACTTTCACTATTTCACTGGGTTGTAAA-TTCAATTCACTGCAAACTAATTAAGAGGAAGAAGGTGGGAAGCGGGGTTGTGTCGATGCTGCGGCCTCCCCCGGAAAGTAACATTGATATAATGGTTAAAACAACAAATGCTG---CACT-CTAGTTGGCTTTT-AAGATAAAAATATGGTT----GTCATTT-ACTCAAGAT-ATTTTTTGTATTTTG------TGTCTTTTAAACATATTTTATCAAATTTTT-------TTTGGAGTG-----AGGGGTG---GGCAGAGTATATG--------CTGCCCCTCC--ACCTTAATATT-GGGTG--GGG---------GAGGAACATACGCCTTTGTTTTTACGCCACTTTCTGAAGCTTCGCCAGTTCAAATTGCAGCCAACAGACACTACATCCAAAAAGGCG--TAGTGACGCACTGTGCATATATATAAATTG--------ACAAA-ACCTTAAATTTTGTGTGAAAAGTATTTATACCCAACA--GAAAATTACTAAGTTATAAATTCAAAA---------TATAAAAA-ATCT-AAAAAAAAT-------CAATAACTATAATCGCAATATTTATATCGTCTTAATTTACCATTTTGAATTATTGGCATTATGTGCCAGCATGTTTCATAAATCTTTAGCTTTCTAATACGATGTAGATTATA-TTAAAACGGT-AATAGATAACACATTGAAAACAACATA-TTA-----------ATCTATTTTAAATATAAGGGGCGTCAATATACGTT----TCCGTAATTA
gi|2 : ATATTGACCATTTGATCGATTATT-----------ATAAACAAGTGATAAATATA--TTA---AACGT----TGTTTACTCAATTTAA----------------AT---AAGTG--TT-TAAA---GTATTACCGTGTGTTATTTTGTAATATTACAAAAAAAAATT-CTCGCAATTATATACATGCATATGTATCATATATAAATTTTCATTGGCGTAGGAGCCTTTTAATTACTTGGGAAGCAAACCTGGCGAGAGAGTGTAGGAGAAAGAATCCCCTCCCAT------AGTTGAGGATACGGG-GG-CCT-CCATCGGATCAT---TTTGAT--ATCTTAAT-T-CCAA-----GC--TGT----TGCA--T-TCAATGG--AGTTGTTA-AG---ATAAAGATA----TGATT----GTCA-TA-ACTCCA--------ATATTTT----G-TG--A--TTTA---------AATA-TTT-T-A-TAAAGAAA-AAAGTCTG--AA--ATGTATT-AAA---AAAC--TT--AC---T--TCGACCGGGTTTT-AAACCCG--TCAC------CTTATGCACTGGGAGCAAGCCG--TGAGAG---G-AGATCTGGG-GGGTGTT-A------TTTAT-TGGA--CT----TCTCC-CCCTG-CA-AAAAA----GGTAT-----TTAAAA-AA-CAAA-AATGC--AAT-CAAG-AAGATTTTAAT-TGG-AAA---ATGGTTGTT-TTTA-TACCAGTTTG---TGGGGTCTCTGCTGGTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCGA-GAGAGTTTCCCTTTCTGTAGGAG-GTAAGAG--GGA--CC-TCCCCTGGAAAATCTTGATATCTTAAAA-GTCAAATGATACATTATAGCAAGTTTTAT-AGTGTATT--AGGGGAAA------GTTGGTGGTTACTT-------------CA------CGG-------T-------GACATTTAAACG-TTTTTATTAAGAAAGAAAAACTGTAAGATGTATTAAACCGGAACTTTCACTATTTCACTGGGTTGTAAA-TTCAATTCACTGCAAACTAATTAAGAGGAAGAAGGTGGGAAGCGGGGTTGTGTCGATGCTGCGGCCTCCCCCGGAAAGTAACATTGATATAATGGTTAAAACAACAAATGCTG---CACT-CTAGTTGGCTTTT-AAGATAAAAATATGGTT----GTCATTT-ACTCAAGAT-ATTTTTTGTATTTTG------TGTCTTTTAAACATATTTTATCAAATTTTT-------TTTGGAGTG-----AGGGGTG---GGCAGAGTATATG--------CTGCCCCTCC--ACCTTAATATT-GGGTG--GGG---------GAGGAACATACGCCTTTGTTTTTACGCCACTTTCTGAAGCTTCGCCAGTTCAAATTGCAGCCGGCAGACACTACATCCAAAAAGGCG--TAGTGACGCACTGTGCATATATATAAATTG--------ACAAA-ACCTTAAATTTTGTGTGAAAAGTATTTATACCCAACA--TAAAGTTACTAAGTTATAAATTCAAAATATAAAAAATA----------T-AAAAAAAAT-------CAATAACTATAATCGCAATATTTATATCGTCTTAATTTACCATTTTGAATAATTGGCATTATGTGCCAGCATGTTTTATAAATCTTTAACTTTCTAATACGATGTAGATTATA-TTAAAACGG-------------------------CATA-TTA-----------ATCTATCTTAAATATAAGGGGGGTCAATATACGTT----TCCGTTAT
gi|6 : tATCTTCACCATTTGATCGATTATTATAAACGAGTGATAAATATGT--TAAACGTAGTTTACTCAATTTATAATTTTTATACAATTTAACATTTGATTTTAATTCATGTTAAATGGCTTGTAAATAAGTGTTACCGTGAGTTATATAGTAATACTACAAAAAAACATTTCTCGCGATTATTTACGTGTAAATGTATCATATATAAATTTTTATTGGCGTAGGAGCGTTTTAATTACTTAGGAGACCAACTTGGCGAAAGAGTGTAGGAGAAAGA----------AT------AATTGAGGCTACGGG-GG-CCT-CCATCGGATTAC---TTTGAT--ATCTTAAT-C-CCCA-----GC--TGT----TGCA--T-TCAATGG--AGTTGTTA-AG---ATAAAGATA----
gi|3 : GGAGAGAGTTTCCCTTGC--T------GGT-GGGGGTAAGAG-GGACCT-CCCCTGGAAAAT---CTTGAT--ATCTTAAAAG-CCAAATAATGCCTTAT----AGCAAGT-TTTATAG--TGTT-TTA-GG---GGAAAGCT------GGTT----GTTA-TTTACTCCA--------ACATTTTCAC-GCTG--ACATTTA---------GACG-TTT-TTA-TTAAGAAAGAAAAACTG--TATGATGTATT-AAACAGGAAC--TTTCAC---TGTTCCACTGGGTTGT-AAACCCA---------------ATTCACT----GCAAACTAATTAAGAG---G-AAA-----A-AGGTGGT-AAGCGGGTTTGTGTCGATGCTGCGGCCTCC-CCCGG-AA-AGTAACATTGATATGATAGTTAAAACAA-CAAATGCTGC--ATT-CTAGTTAGCTTTTAAGATAA-AAAT--ATGGTTGTCATTTA-
gi|4 : tttaaatattttatgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntatgggagggtgttatatattgggcttctcctctgcataaaaagatatttaaaaaacatacatgcattctagtagattttaatcggaaaatggttgttattaataccagtttgtggggtctcggctggtgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnGAAGAGAGTTTCCCTTGC---------AGGTGGGGGTAAGAGTGA-CCT-CCCCTGGAAAAT---CTTGAT--ACGTTAA------AA-----GC--CAAAAAATGCA--T-T--ATAGCAAGTT-TTATAGTGTATAAGGGGAAAGCTGGTT----GTTA-TTTACTCTA--------ACATTTTCACGG-TG--ACATTTA---------AACG-TTTAT-A-TTAAGAAAGAAAAACTGTAAG--ATGTATT-AAACAGGAACATTC--ACTGTT--TC-ACTGGGTTGTAAAACCCAATTCACTGCAAACTTATTAAGAAGAAG-AAG--G--TGGGAA---GCGGGTTT------GTGTCGA------TGCAG-CGG---------CCTCC-CCCGG-AA-AGTAACATTGATATAATAGTTAAAACAA-CAAATGCTGC--ATT-CTAGTTAGCTTTTAA---GATAAACACATGGTTGTC-CTT--TACctgatgattttttgtatttagtgactttaaaacatattttatcaattgttttggagtggagagtgggcagagtatatgctgcccctccaccttaatattgggtggaggggaagaacatacgcctttgtttttacgccactttctgaggcttcgccagttcgaattgcagccggcagacacttcatccaaaaaggcgtagtgacgcactgtgcatatacataaattgacaaaaccttaaattttgtgtgaaaagtatttataccaaacagaaaattaccaagttataaattcaaaatataaaaaatctaaaaaaaaatcaataactattatcgcaatatttatatcgtcttaatttaccactttgaataattggcattatgtgtaagcatggtttataattctttaactttctaatacgatgtagattatatttaaaagtaaattgataacacatcgaaaa
gi|12 : aagatatttaaaaagcaaaaaagcattttagtagattttaattggaaaatggttgttatttataccagtttatggggtccctgctggtgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnGGAGGGGTAACCCCCTCCTAT------TGGTGAGGGTACGGA-GG-ACGACCCTCGAAACGTAAACATAATCAACATTAAA-T--CAT-----GC---GT----------T-TTAGTGG---GTTTATA-GG---CTGAAAATA----TGAAC----GTTATTT-ACTCCA--------ATAGCGTAC--G-TC--C--TTCA---------AACGTTTT-T-ATTAAAGAAA-tcaaatttttttttgtattttgtgacttttaaacatattttatcaatttatttggagtaggggtgggcagagtatatggcataatgctgcccctccaccttaatatttggtggggggagggggggaggaacatatgcctttgttttaacgccactttttgacgcttcgccagtttgaattgcagccggcagacactacatccaaaaaggcgtagtgacgcactgtgcatatacataaattgacaaaaccttaaattgtgtgtgaaaagtatttatacccaacagaaaagtaccaagttataaattcaaaatataaaaaatcaattactataatcacaatatttatatcgtcttaatttaccattttgaataattggcattatgtgccagcatgttttataaatctttaaccttctaatacgatgtcgattatattaaaaagttaatagataacacattgaaaacaacatatttatctatcttaaatataagggaggtcagtatacatttccgtat
gi|11 : gATCTCGTCCCGTTGGTAGAGATGAGGG-ATGGA-GG-CTT-CT-CCGGAATAT------GAA--ATCTTAAA-AACCAAAT---GC--TGT----TGTG--T---AGCGA--GTTTTTTA-GG---ATAAAAATA----AGATTTTTGGTTA-T----TTCA--------CTATTTT----T-T------TTTACTTTGAAACGATT-TTT-T-T-TAAAGAAA-AAAtacattcataa
gi|14 : ggggtggggtttGAT--ATCTTAAA-A-ACAAAAT--GC--TGT----CGCA--TATTAGTAA--A--T-TTA-AG---GGGAA-AC-----TGATT----GTTA-TTTATTCCA--------ATATTTT----G-TG--ACTTTTA---------AACG-TTT-TCA-TTAAGAaaaagatttatta
gi|10 : tatggaggcgtggggagttggggatcatccggtggaaatgGTT-TTA-GG---ATAAAAATA----CGGTT----GTCA-TT-ACTCCAGATGTTTGGTATTTT----G-TGACA--CTTA---------GACA-TTT-T-
gi|21 : aagagaaatagtgtggttagcgggtttgttgcggtgctgggaccttccccgaaaaaaaattaaaatatcaaatgttcatttctagttagG---GTAGGGGTA----TGATT----ATTA-TTTACTCCA--------ATATTTT----T-TA--C--TTTA---------AAtatcaatcctttactcatatttggaatgatgttaggggtggctggaaaagaatatgctgccactcccgaccttaatattgggagaggg
gi|3 : g--TTTA---------AATA-TTT-T-A-TGNNNNNN-NNNNNNNN--NN--NNNNNNN-NNN---NNNN--NN--NN---N--NNNNNNNNNNNNN-NNNNNNN--NNNN------NNNNNNNNNNNNNNNNNNNNNN--NNNNNN---N-NNNTATGGGAGGGTGTT-A------TATAT-TGGG--CT----TCTCC-TC-TG-CATAAAAA----GATAT-----TTAAAA-AA-CATA-CATGC--ATT-CTAG-TAGATTTTAAT-CGG-AAA---ATGGTTGTT-ATTAATACCAGTTTG---TGGGGTCTCGGCTGGTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGA-GAGAGTTTCCCTTGCTGGTGGGG-GTAAGAG--GGA--CC-TCCCCTGGAAAATCTTGATATCTTAAAA-GCCAAATAATGCCTTATAGCAAGTTTTAT-AGTGTTTT--AGGGGAAA------GCTGGTTGTTATTTACTCCAACATTTTCA------CGC-------T-------GACATTTAGACG-TTTTTATTAAGAAAGAAAAACTGTATGATGTATTAAACAGGAACTTTCACTGTTCCACTGGGTTGTAAA-CCCAATTCACTGCAAACTAATTAAGAGGAAAAAGGTGGTAAGCGGGTTTGTGTCGATGCTGCGGCCTCCCCCGGAAAGTAACATTGATATGATAGTTAAAACAACAAATGCTG---CATT-CTAGTTAGCTTTT-AAGATAAAAATATGGTT----GTCATTT-ACT---GATGATTTTTTGTATTTAG------TGACTTTAAAACATATTTTATCAA--TTGT-------TTTGGAGTG-----GAGAGTG---GGCAGAGTATATG--------CTGCCCCTCC--ACCTTAATATT-GGGTGGAGGG---------GAAGAACATACGCCTTTGTTTTTACGCCACTTTCTGAGGCTTCGCCAGTTCGAATTGCAGCCGGCAGACACTTCATCCAAAAAGGCG--TAGTGACGCACTGTGCATATACATAAATTG--------ACAAA-ACCTTAAATTTTGTGTGAAAAGTATTTATACCAAACA--GAAAATTACCAAGTTATAAATTCAAAA---------TATAAAAA-ATCTAAAAAAAAAT-------CAATAACTATTATCGCAATATTTATATCGTCTTAATTTACCACTTTGAATAATTGGCATTATGTGTAAGCATGGTTTATAATTCTTTAACTTTCTAATACGATGTAGATTATATTTAAAA--GTAAATTGATAACACATCGAAAAacgctttta
gi|7 : ATA-TTT-T-A-TAAA-AAG-AAAGTATA--AA--ATTTATTTAAA---AAAG--T------------CGACCGGGTTTA-AAACCC---------------T-TGGA--GGGAGTGATACA--TG----------GTTTTGCG-G---------------TTAT-TGGG--GT-------CCACCCTGGCA-ATAAGTT--GATAT-----TAAAAA-AAACAAC-AACACGGAATTCTAG-TAGAATTTAAT-TGT-AAA---ATGGTTTTTATTTA-TACCAGTGTGGGAGGGGGTCT
gi|17 : AA---AAGC--GA--AT---T--TCAACCAGGTTTT-AAACCCG--TTAC------TTTTCGCACTGGGAG--AGGGA--TGAGAGTGTG-AGA-------GGGTGTattatgcctaccccggaataagaataaatctaaaacaccaaatgctgcattctataaagttttcagcaaaaaggtatggttgaaatttactctagagtgggagagggtg
gi|4 : ttAA----GATAT-----TTAAAA-AG-CAAA-AAAGC--ATT-TTAG-TAGATTTTAAT-TGG-AAA---ATGGTTGTTATTTA-TACCAGTTTA---TGGGGTCCCTGCTGGTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGAAGAGAGTTTCCCTTGCAGGTGGGG-GTAAGAG--TGA--CC-TCCCCTGGAAAATCTTGATACGTTAAAA-GCCAAAAAATGCATTATAGCAAGTTTTAT-AGTGTATA--AGGGGAAA------GCTGGTTGTTATTTACTCTAACATTTTCA------CGG-------T-------GACATTTAAACG-TTTATATTAAGAAAGAAAAACTGTAAGATGTATTAAACAGGAACATTCACTGTTTCACTGGGTTGTAAAACCCAATTCACTGCAAACTTATTAAGAAGAAGAAGGTGGGAAGCGGGTTTGTGTCGATGCAGCGGCCTCCCCCGGAAAGTAACATTGATATAATAGTTAAAACAACAAATGCTG---CATT-CTAGTTAGCTTTT-AAGATAAACACATGGTT----GTCCTTT-ACTCAAATT-TTTTTTTGTATTTTG------TGACTTTTAAACATATTTTATCAA--TTTA-------TTTGGAGT------AGGGGTG---GGCAGAGTATATGGCATAATGCTGCCCCTCC--ACCTTAATATT-TGGTG--GGGGGAGGGGGGGAGGAACATATGCCTTTGTTTTAACGCCACTTTTTGACGCTTCGCCAGTTTGAATTGCAGCCGGCAGACACTACATCCAAAAAGGCG--TAGTGACGCACTGTGCATATACATAAATTG--------ACAAA-ACCTTAAATTGTGTGTGAAAAGTATTTATACCCAACA--GAAAAGTACCAAGTTATAAATTCAAAA---------TAT-------------AAAAAAT-------CAATTACTATAATCACAATATTTATATCGTCTTAATTTACCATTTTGAATAATTGGCATTATGTGCCAGCATGTTTTATAAATCTTTAACCTTCTAATACGATGTCGATTATA-TTAAAAAGTT-AATAGATAACACATTGAAAACAACATA-TTT-----------ATCTATCTTAAATATAAGGGAGGTCAGTATACATT----TCCGTA
gi|11 : TCCCGTTG-GTAG-AG-ATGAGGGATGGAGGCT-TCTCC-GGAATAT---GAAATCTTAAAA-ACCAAATGCTGTTGTGTAGCGAGTTTTTT-AGGATA----AAAATAAG------ATTTTTGGTTATTT-------------CA------CTATTTTTTTT-------TACTTTGAAACGATTTTTTTTAAAGAAAAAAAA----AAGATTTATTAt
gi|13 : ggggtggggtttatctcgGAGAGTAAAAG--A--------CCCTCAGAAATTTCTAACATCATCAGT-ATCAAATCATGCATTCTAACGAGTTTT-T-GCGGGATT--GGGGTATG------ATTATTATTTACTC-------------CAT-----C---------T-------CACTTTTAAATG-CTTTTATTAA
gi|10 : gtaggggtagcccctcgtgttagtagggatacaG--GGA--CC-TTCCCCGAAAAA-----AAAT--TAAAATATCAAATGTT-CATT-T--CTAGTT-----AG-GTTTT--AGGATAAAAATACGGTTG-TCATTACTC-------------CAGATGTTTGG-------TATTTTGTGACACTTAGACA-TTTTTATCAAa
gi|14 : aagagaaatagtgtggttagcgggtttgttgcggtgctG--GGA--TCATCCGGTGGAAA---TGGATATCTTAAAA-ACAAAATG-----CTGTCGCA-----TATTAGTAAATTTAAGGGGAAA-------CTGATTGTTATTTATTC---------CAATATT-TTG-------T-------GACTTTTAAACG-TTTTCATTAAGAtcctttactcatatttggaatgatgttaggggtggctggaaaagaatatgctgccactcccgaccttaatattgggagaggg
gi|18 : tatggaggcgtggggagttgG-------T-------GACTTTAAAACG-CTTTTATTAAGAAA
gi|16 : ggagatgggtatgcatattatttactccaatagtatG-------T-------GACTTTAAAACG-CTTTTATTAAGAAAca
gi|10 : gggagatgggtatgcatattatttactccaatagtatAAGAGAAATAGTGTGGTTAGCGGGTTTGTTGCGGTGCTGGGACCTTCCCCGAAAA--AA---------AAT---TAAAATATCAAATGTT----CATTTCTAGTTAGGTTTT-AGGATAAAAATACGGTT----GTCA-TT-ACTCCAGAT-G--TTTGGTATTTTG------TGACACTTAGACAT-TTTTATCAATCCTTTACTCATATTTGGAATGATGTTAGGGGTGGCTGGAAAAGAATATG--------CTGCCACTCCCGACCTTAATATT-GGGAG--AGG---------Gcacctacacaag
gi|7 : GCCTACCCCGGAA--TAAGA---ATA-AAT--CTAAAACACCAAATGCTG---CATT-CTATAAAGTTTTC-AGCAAAAAGGTATGGTT----GAAATTT-ACTCTAGA
gi|11 : atattttataaaaagaaagtataaaatttatttaaaaaagtcgaccgggtttaaaacccttggagggagtgatacatggttttgcggttattggggtccaccctggcaataagttgatattaaaaaaaacaacaacacggaattctagtagaatttaattgtaaaatggtttttatttataccagtgtgggagggggtctattatCTTCTCCGGAA--TA----TGA---AATC-TTAAAA-ACCAAATGCTG---TTGT-GTAGCGAGTTTTTTAGGATAAAAATAAGATTTTTGGTTATTTCACT----AT--TTTTTTTTACTTTGAAACGATTTTTTTTAAAgtgggagagggtg
gi|12 : ggggtggggtttatctcgtcccgttggtagagatgagggatggaggCCCTCGAAACGTAA-----ACATAATC-----AACATTAAATCATG---CGTT-TTAGTGGGTTTAT-AGGCTGAAAATATGAAC----GTTATTT-ACTCCA-AT-A----GCGTA-----------CGTCCTTCAAACGT-TTTTATTAAAgaaaaaaaaaagatttatta
gi|19 : gggaggggtaaccccctcctattggtgagggtacggaggacgaCCCCGGAA-GT--TATTGATAT-----CTAAAACACTTAATGCTT---CATT-GTAGTCAGTATTT-AGGATAAAgaaatacattcataa
gi|14 : AAAACAA--AATGCTGTCGCATA-TTAGTAAA--TTT-AAGGGGAAACT--GATT----GTTATTT-ATTCCAA-----------TATTTTG------TGACTTTTAAACGT-TTTCATTAA
gi|3 : tatggaggcgtggggagttggggatcatccggtggaaatggatatcttaGTATGTT--------CTTCCCCTCC--ACC-CAATATTAAGGTG--GAG---------GGGCAGCATAga
gi|8 : tttaaatattttatgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntatgggagggtgttatatattgggcttctcctctgcataaaaagatatttaaaaaacatacatgcattctagtagattttaatcggaaaatggttgttattaataccagtttgtggggtctcggctggtgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnggagagagtttcccttgctggtgggggtaagagggacctcccctggaaaatcttgatatcttaaaagccaaataatgccttatagcaagttttatagtgttttaggggaaagctggttgttatttactccaacattttcacgctgacatttagacgtttttattaagaaagaaaaactgtatgatgtattaaacaggaactttcactgttccactgggttgtaaacccaattcactgcaaactaattaagaggaaaaaggtggtaagcgggtttgtgtcgatgctgcggcctcccccggaaagtaacattgatatgatagttaaaacaacaaatgctgcattctagttagcttttaagataaaaatatggttgtcatttactgatgattttttgtatttagtgactttaaaacatattttatcaattgttttggagtggagagtgggcagagtaATCCAAAAAGGCGCGTAGTGGCGTACTATGCATGTACATAAATTG--------ATAAA-ACCTTACATTTTGTTCGAAAAGTATTTATATCCGACACTG----TTTCCAAGTTATAAATTCAAAA---------CATAAAAATACTT-GGAAAAAAT-------CAATAACTATGATCGC------TATATCGTCCTAATTCAACAATTTGAATAATTGGCATTATGTGCCATCGTGTTTTATAAAGCTTCAACTTTCTAATACGATGCAGATTCTA-TTAAGAAGTT-AATAAGTAACACATTGAAAACAACATA-TT-------------TATATCTTAGATATAAGGGgcctttgtttttacgccactttctgaggcttcgccagttcgaattgcagccggcagacacttcatccaaaaaggcgtagtgacgcactgtgcatatacataaattgacaaaaccttaaattttgtgtgaaaagtatttataccaaacagaaaattaccaagttataaattcaaaatataaaaaatctaaaaaaaaatcaataactattatcgcaatatttatatcgtcttaatttaccactttgaataattggcattatgtgtaagcatggtttataattctttaactttctaatacgatgtagattatatttaaaagtaaattgataacacatcgaaaa
gi|5 : --TAGTAACA-ACTGT-CTTAAATGTAGATTACTTCAAGTATAAAGACATGATATTTTCT---AAAAGTATTTATATCCGACA--GAAAATTGCCTAGTTATAAATTCAAAA---------TATAAGAA-AGCT-A-------TTTTTTTTCAAAAACTATAATCGCAATATTT-TCTGGTCTTAATTTACCA---------ATT--CATTATGTGCCACCATGTTG-ATAAAGCT---ACGATATA-TA-GATCAAGATTATA-TTAAAAAGTT-AATAGATAACGCATTGAAAACGACATA-TTT-----------ATTTATTTTAAATATAAGGGGGGTCAATATACGTTTTCATCCGTAGCTAa
gi|9 : TAAATTG--------ACGAA-ACGTTAAGTTGTGTGCGAAAAGTATTTATATCCATCA--AAAAATT-----GTTATAAATTTAGAA---------TATAACTTTATTT---------T-------CAA-GACTATAATCGAAATATTTATATCGCCGTGTTTTACAAATTTGAAT-AT----ATTATATGCCCACGTGTGT-ATAAAACATTAACGTTCTAAAACGATATAATTTCTA-TTAAAATATT-AATCGATAACATATTTAAAATGACATATTTATTAATATATTTATCTATTTTAAATATAAATGG-ATCAATATATGTT----TTCGTAATTcatgtttttccaaaaccgtatattatttagtcttatttgtggggtatataaccttgatttactgatgtagatgtacatttatgtacac
3 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|15 ): GGAGGGTTAATCGTTTCTGTTGGTGAGGGACATAGAGAACGATCATTGGAAATCTTTAACTTTATCAACGTTAAATCGTGCATTCTTGTAAGGTTTTAGGG
Unaligned ( gi|20 ): GGGGTGTATGCTTATTATTTACTCCAATAGTTTGTGACTTTAAACGCTTTTATTAA
Unaligned ( gi|22 ): GGGAGTAGGATTATCATTTACTCCAACAGTATTTGACTTTAAAACTCTTTTA
Alignments
lowQualScore : 1111111111111111111111111111111111111111111111111111111 1111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 55 8888888888888888888888888888888888888888888888888888888 33333 333 2 222222 111 22222222 222 222222 11 222222 222 1 1 111 2222 1 33 111 1 111 0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 1 9999999999999 1 2222 22 2222222 22222 111 22222222 11 11 333333333 11 222222222222222222222 333333333333 1111
lowQualScore : 1 1 0 6 11 55 1111111111111111111111111111111111111111111111111111111 55555 777 0 1 1 1 0 1 3 0 1 0 1 1 0 1 2 333333 1 22 888 222 66666666 99 77 777 2 6 1 222222 1 1 1 66 0 00 999999 333 4 1 99 2 0 0 0 2 0 0 9 2 77 1 3 777 9999 3 2 3 2 0 8 33 8 444 1 1 1 0 444 3333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333 0 1 22 8 2 1 2 0 0 1 1 5555555555555 8 1 3 0 1 0 55 3 1 11 8888 1 5 1 0 9 8 0 1 6 0 22 6666666 00000 444 99999999 11 11 222222222 1 11 1 77 3 444444444444444444444 1 1 1 1 1 3 1 1 1 1 444444444444 1 7777
lowQualScore : . . . . .. .. ....................................................... ..... ... . . . . . . . . . . . . . . . ...... . .. ... ... ........ .. .. ... . . . ...... . . . .. . .. ...... ... . . .. . . . . . . . . . .. . . ... .... . . . . . . .. . ... . . . . ... ....................................................................................................... . . .. . . . . . . . . ............. . . . . . . .. . . .. .... . . . . . . . . . . .. ....... ..... ... ........ .. .. ......... . .. . .. . ..................... . . . . . . . . . . ............ . ....
lowQualScore : 0 0 7 0 77 00 0000000000000000000000000000000000000000000000000000000 33333 777 7 0 0 0 7 0 7 7 0 7 0 0 7 0 0 000000 0 22 333 555 33333333 22 77 555 5 7 0 222222 4 9 7 11 1 66 444444 000 0 0 88 5 0 8 2 5 2 2 8 5 22 0 2 555 8888 5 0 2 5 0 2 22 0 000 4 4 4 6 000 0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 0 0 00 0 8 4 8 8 8 4 0 6666666666666 0 0 0 0 0 6 77 0 4 66 6666 0 0 0 2 3 0 8 0 0 8 22 0000000 00000 000 00000000 00 00 000000000 0 00 4 99 9 000000000000000000000 7 0 4 4 4 6 0 7 6 6 222222222222 0 0000
consensus : ATATTGACCATTTGATCGATTATTATAAACGAGTGATAAATATAT--TAAACGT------------------TGTTTACTCAATTTAA----------------AT---AAGTG--TT-TAAA---GTATTACCGTGTGTTATTTTGTAATATTACAAAAAAAAATT-CTCGCGATTATATACGTGCATATGTATCATATATAAATTTTCATTGGCGTAGGAGCCTTTTAATTACTTGGGAAGCAAACCTGGCGAGAGAGTGTAGGAGAAAGAATCCCCTCCCAT------AGTTGAGGGTACGGGGGCC-T-CCGTCGGANCAT---TTTGAT--ATCTTAAAT-CCAAA--GCTGTTGCAT-TCAGTGGAGTTGT-T--AGGATAAAGATATGATTGTTATTTACTCCAATATTTT--GTGA--TTT------AAACG---TTTT-ATNAAGAAAAAAGTCTGAAATNTATT-AAAAAACTTACTTCGACCGGGTTTTAAACCCGTCACCTTATGCACTGGGAGCGAGNCGTGAGAG---GAGATCTGGGGGGTGTTATTTATTGGGCTTCTCCCCCTG-CAAAAAA--GATATTTAAAAAA-CAAAAACGC---ATTCTAGTAGATTTTAATTGGAAAATGGTTGTTATTTATACCAGTTTG---TGGGGTCTCTGCTGGTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCGA-GAGAGTTTCCCTTNCTGNNGGAG-GTAAGAGGGACCTCCCCTGGAAAATCTTGATATCTTAAAAGTCAAATGATGCATTATAGCAAGTTTTATAGTGTATTAGGGGAAAGCTGGTTGTTATTTACTC-AACATTTTCA-CGGTGACATTTAAACGTTTTTATTAAGAAAGAAAAACTGTAAGATGTATTAAACNGGAACTTTCACTGTTTCACTGGGTTGTAAA-CCCAATTCACTGCAAACTAATTAAGAGGAAGAAGGTGGGAAGCGGGTTTGTGTCGATGCTGCGGCCTCCCCCGGAAAGTAACATTGATATAAT-G-TTAAAACANCAAATGCTGCA-TTCTAGTTAGCTTTTAGGATAAAAATATGGTTGTCATTTACTCAAGAT-ATTTTTTGTATTTTGTGACTTTTAAACATATTTTATCAAATTTTT-------TTTGGAGTG-----AGGGGTG---GGCAGAGTATATG--------CTGCCCCTCC--ACCTTAATATTGGGTG--GGG---------GAGGAACATACGCCTTTGTTTTTACGCCACTTTCTGAAGCTTCGCCAGTTCGAATTGCAGCCGGCAGACACTACATCCAAAAAGGCG--TAGTGACGCACTGTGCATATACATAAATTGACAAAACCTTAAATTTTGTGCGAAAAGTATTTATACCCGACA--GAAAATTACCAAGTTATAAATTCAAAATATAAAAA-ATCT-AAAAAAAA-------TCAATAACTATAATCGCAATATTTATATCGTCTTAATTTACCANTTTGAATAATTGGCATTATGTGCCAGCGTGTTTTATAAATCTTTAACTTTCTAATACGATGTAGATTATATTAAAAAGTTAATAGATAACACATTGAAAACGAC------------ATATTTATCTATCTTAAATATAAGGGGGGTCAATATACGTT----TCCGTAATTA
Reference ( family-1845 ) : ATNTTNACCATTTGATCGATTATTATAAACGAGTGATAAACANGTGATAAACGTAGTTTACTCAACGTATAATNTTTACNCAATTTAACATTTGATTTTAATTCATGTTAAGTGGCTTGTAAATAAGTGTTACCGTGNGTTATNTNGTAATACTACAAAAAAANATTTCTCGCGATTATNTACGTGCANATGTATCATATATAAATTTTCATTGGCGTAGGAGCNTTTTAATTACTTGGGAGGCNAACCTGGCGAGAGAGTGTAGGAGAGAGAATCCCCTCCCAT------AGNTGAGGGTACGGGGGCC-T-CCCCCGGAANAT---CTTGAT--ATCTTAAAN-CCAAA--GCTGTTGCAT-TTAGTGGAGTT-T-T--AGGATAAAGATATGATTGTTATTTACTCCAATATTTT--GTGA--TTT------AAACG---TTTT-ATNAAGAAAAAAGNCTGAAATGTATT-AAAAAACTNACTTCGACCGGGTTTTAAACCCGTCACCTTATGCACTGGGAGCAAGNCGTGAGAG---GAGATT--GGGGGTGTTATTTATTGGGCTCCTCCCCCTG-CAAGAAAC-GATATTTAAAAAA-CAAAAATGC---ATTCTAGTAGATTTTAATTGGAAAATGGTTGTTATTTATACCAGTTTG---TGGGGTCTCTGCTGGTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGA-GAGAGTTTCCCTTNCTGNNGGAG-GTAAGAGGGACCTCCCCCGGAAAATCTTGATATCTTAAAAGCCAAATGATGCATTATAGCGAGTTTTATAGTGTATTAGGGGAAAGCTGGTNGTTACTTA----------TCCA-CGGTGACNTTTAAACGTTTTTATTAAGAAAGAAAAACTGTAAGATGTATTAAACAGGAACTTTCACTGTTTCACTGGGTTGTAAA-CCCAATTCACTGCAAACTAATTAAGAGGAAGAAGGTGGNAAGCGGGTTTGTGTCGATGCTGCGGCCTCCCCCGGAAAGTAACATTGATATAAT-G-TTAAAACANCAAATGCTGCA-TTCTAGTNAGCTTTTAGGATAAAAATATGGTTGTCATTTACTCCAGAT-ATTTTTTGTATTTTGTGNCTTTTAAACGTATTTTATCAAACTTTT-------TTTGGAGTG-----AGGGGTG---GGCAGAGTATATG--------CTGCCCCTCC--ACCTTAATATTGGGTG--GGG---------GAGGAACATACGCCTTTGTTTTTACGCCACTTTCTGANGCTTCGCCAGTTCGAATTGCAGCCGGCAGACACTACATCCAAAAAGGCG--TAGTGACGCACTGTGCATATACATAAATTGACAAAACCTTAAATTTTGTGCGAAAAGTATTTATACCCGACA--GAAAATTACCAAGTTATAAATTCAAAATATAAAAA-ATCT-AAAAAAAA-------TCAATAACTATAATCGCAATATTTATATCGTCTTAATTTACCANTTTGAATAATTGGCATTATGTGCCAGCGTGTTTTATAAANCTTTAACTTTCTAATACGATGTAGATTATATTAAAAAGTTAATAGATAACACATTGAAAACGAC------------ATATTNATCTATCTTAAATATAAGGGGGGTCAATATACGTT----TCCGTAATTA
gi|1 : ATATTGACCATTTGATCGATTATTATAAACAAGTGATAAATATAT--TAAACGT------------------TGTTTACTCAATTTAA----------------AT---AAGTG--TT-TAAA---GTATTACCGTGTGTTATTTTGTAATATTACAAAAAAAAATT-CTCGCAATTATATACATGCATATGTATCATATATAAATTTTCATTGGCGTAGGAGCCTTTTAATTACTTGGGAAGCAAACCTGGCGAGAGAGTGTAGGAGAAAGAATCCCCTCCCAT------AGTTGAGGATACGGGGGCC-T-CCATCGGATCAT---TTTGAT--ATCTTAATT-CCAA---GCTGTTGCAT-TCAATGGAGTTGT-T--AAGATAAAGATATGATTGTCATA-ACTCCAATATTTT--GTGA--TTT------AAATA---TTTT-ATAAAGAAAAAAGTCTGAAATGTATT-AAAAAACTTACTTCGACCGGGTTTTAAACCCGTCACCTTATGCACTGGGAGCAAGCCGTGAGAG---GAGATCTGGGGGGTGTTATTTATTGGACTTCTCCCCCTG-CAAAAAA--GGTATTTAAAAAA-CAAAAATGC---AATCAAGAAGATTTTAATTGGAAAATGGTTGTT-TTTATACCAGTTTG---TGGGGTCTCTGCTGGTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCGA-GAGAGTTTCCCTTTCTGTAGGAG-GTAAGAGGGACCTCCCCTGGAAAATCTTGATATCTTAAAAGTCAAATGATACATTATAGCAAGTTTTATAGTGTATTAGGGGAAAGTTGGTGGTTACTT-------------CA-CGGTGACATTTAAACGTTTTTATTAAGAAAGAAAAACTGTAAGATGTATTAAACCGGAACTTTCACTATTTCACTGGGTTGTAAA-TTCAATTCACTGCAAACTAATTAAGAGGAAGAAGGTGGGAAGCGGGGTTGTGTCGATGCTGCGGCCTCCCCCGGAAAGTAACATTGATATAAT-GGTTAAAACAACAAATGCTGCA-CTCTAGTTGGCTTTTAAGATAAAAATATGGTTGTCATTTACTCAAGAT-ATTTTTTGTATTTTGTGTCTTTTAAACATATTTTATCAAATTTTT-------TTTGGAGTG-----AGGGGTG---GGCAGAGTATATG--------CTGCCCCTCC--ACCTTAATATTGGGTG--GGG---------GAGGAACATACGCCTTTGTTTTTACGCCACTTTCTGAAGCTTCGCCAGTTCAAATTGCAGCCAACAGACACTACATCCAAAAAGGCG--TAGTGACGCACTGTGCATATATATAAATTGACAAAACCTTAAATTTTGTGTGAAAAGTATTTATACCCAACA--GAAAATTACTAAGTTATAAATTCAAAATATAAAAA-ATCT-AAAAAAAA-------TCAATAACTATAATCGCAATATTTATATCGTCTTAATTTACCATTTTGAATTATTGGCATTATGTGCCAGCATGTTTCATAAATCTTTAGCTTTCTAATACGATGTAGATTATATTAAAACGGTAATAGATAACACATTGAAAACAAC------------ATATTAATCTATTTTAAATATAAGGGGCGTCAATATACGTT----TCCGTAATTA
gi|10 : AAGAGAAATAGTGTGGTTAGCGGGTTTGTTGCGGTGCTGGGACCTTCCCCGAAAA--AA---------AA----TTAAAATATCAAATGTT-CATTTCTAGTTAGGTTTTAGGATAAAAATACGGTTGTCA-TTACTCCAGAT-G--TTTGGTATTTTGTGACACTTAGACAT-TTTTATCAATCCTTTACTCATATTTGGAATGATGTTAGGGGTGGCTGGAAAAGAATATG--------CTGCCACTCCCGACCTTAATATTGGGAG--AGG---------G
gi|11 : ATCTCGTCCCGTTGGTAGAGATGAGGG-ATGGAGGCT-T-CTCC-GGAATAT------GAA--ATCTTAAAAACCAAAT-GCTGTTG--T-GTAGCG-AGTT-T-TTTAGGATAAAAATAAGATTTTTGGTTATTTCACTATTTT--TT----TTTACTTTGAAACGATTTTTT-TTAAAGAAAAAAAA--AAGATTTATT-A
gi|12 : ggggtggggtttGGAGGGGTAACCCCCTCCTAT------TGGTGAGGGTACGGAGGAC-GACCCTCGAAACGTAAACATAATCAACATTAAAT-C--AT--GC-GTT-----TTAGTGG-GTT-TAT--AGGCTGAAAATATGAACGTTATTTACTCCAATAGCGTACGTCC--TTC------AAACGT--TTTT-ATTAAAGAAA
gi|13 : gGAGAGTAAAAGA-----CCCTCAGAAATTTCTAACATCATCAGTATCAAATCATGCATTCTAACGAGTTTT-TGCGGGATTGGGGTA----TGATTATTATTTAC---------TCCATC--TCACTTTTAAATGCTTTTATTAAtacattcataa
gi|14 : gtaggggtagcccctcgtgttagtagggatacaGGGGATCAT-CCGGTGGAAA------TGGAT--ATCTTAAAA-ACAAAATGCTGTCGCATATTAGTAAA-TT-T-A--AGGGGAAAC---TGATTGTTATTTATTCCAATATTTT--GTGACTTTT------AAACG---TTTTCATTAAGAa
gi|15 : tatggaggcgtggggagttAACGTTAAATCGTGCA-TTCTTGTAAGGTTTTAGG
gi|16 : ggagggttaatcgtttctgttggtgagggacatagagaacgatcattggaaatctttaactttatcGGTATGCATATTATTTACTCCAATAGTAT--GTGA--CTTTA----AAACGC--TTTT-ATTAAGAAAg
gi|17 : gggagatgAAAAGCGAATTTCAACCAGGTTTTAAACCCGTTACTTTTCGCACTGGGAG--AGGGATGAGAGTGTGAGA------GGGTGTcacctacacaag
gi|18 : ttGGTATGCATATTATTTACTCCAATAGTAT--GTGA--CTTTA----AAACGC--TTTT-ATTAAGAAA
gi|19 : ggagatgCCCCGGAA-GT--TATTGATAT------CTAAAACACTTAATGCTTCA-TTGTAGTCAGTATTTAGGATAAAca
gi|2 : ATATTGACCATTTGATCGATTATTATAAACAAGTGATAAATATAT--TAAACGT------------------TGTTTACTCAATTTAA----------------AT---AAGTG--TT-TAAA---GTATTACCGTGTGTTATTTTGTAATATTACAAAAAAAAATT-CTCGCAATTATATACATGCATATGTATCATATATAAATTTTCATTGGCGTAGGAGCCTTTTAATTACTTGGGAAGCAAACCTGGCGAGAGAGTGTAGGAGAAAGAATCCCCTCCCAT------AGTTGAGGATACGGGGGCC-T-CCATCGGATCAT---TTTGAT--ATCTTAATT-CCAA---GCTGTTGCAT-TCAATGGAGTTGT-T--AAGATAAAGATATGATTGTCATA-ACTCCAATATTTT--GTGA--TTT------AAATA---TTTT-ATAAAGAAAAAAGTCTGAAATGTATT-AAAAAACTTACTTCGACCGGGTTTTAAACCCGTCACCTTATGCACTGGGAGCAAGCCGTGAGAG---GAGATCTGGGGGGTGTTATTTATTGGACTTCTCCCCCTG-CAAAAAA--GGTATTTAAAAAA-CAAAAATGC---AATCAAGAAGATTTTAATTGGAAAATGGTTGTT-TTTATACCAGTTTG---TGGGGTCTCTGCTGGTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCGA-GAGAGTTTCCCTTTCTGTAGGAG-GTAAGAGGGACCTCCCCTGGAAAATCTTGATATCTTAAAAGTCAAATGATACATTATAGCAAGTTTTATAGTGTATTAGGGGAAAGTTGGTGGTTACTT-------------CA-CGGTGACATTTAAACGTTTTTATTAAGAAAGAAAAACTGTAAGATGTATTAAACCGGAACTTTCACTATTTCACTGGGTTGTAAA-TTCAATTCACTGCAAACTAATTAAGAGGAAGAAGGTGGGAAGCGGGGTTGTGTCGATGCTGCGGCCTCCCCCGGAAAGTAACATTGATATAAT-GGTTAAAACAACAAATGCTGCA-CTCTAGTTGGCTTTTAAGATAAAAATATGGTTGTCATTTACTCAAGAT-ATTTTTTGTATTTTGTGTCTTTTAAACATATTTTATCAAATTTTT-------TTTGGAGTG-----AGGGGTG---GGCAGAGTATATG--------CTGCCCCTCC--ACCTTAATATTGGGTG--GGG---------GAGGAACATACGCCTTTGTTTTTACGCCACTTTCTGAAGCTTCGCCAGTTCAAATTGCAGCCGGCAGACACTACATCCAAAAAGGCG--TAGTGACGCACTGTGCATATATATAAATTGACAAAACCTTAAATTTTGTGTGAAAAGTATTTATACCCAACA--TAAAGTTACTAAGTTATAAATTCAAAATATAAAAA-ATAT-AAAAAAAA-------TCAATAACTATAATCGCAATATTTATATCGTCTTAATTTACCATTTTGAATAATTGGCATTATGTGCCAGCATGTTTTATAAATCTTTAACTTTCTAATACGATGTAGATTATATT------------------------AAAACGGC------------ATATTAATCTATCTTAAATATAAGGGGGGTCAATATACGTT----TCCGTTAT
gi|20 : tTATGCTTATTATTTACTCCAATAGTTT--GTGAC-TTT------AAACGC--TTTT-ATTAA
gi|21 : ggggtgGGGTAGGGGTATGATTATTATTTACTCCAATATTTT--TTAC--TTTA-----AAACG---CTTT-
gi|3 : --GAGGGTGTTATATATTGGGCTTCTCCTC-TG-CATAAAAA-GATATTTAAAAAA-CATACATGC---ATTCTAGTAGATTTTAATCGGAAAATGGTTGTTATTAATACCAGTTTG---TGGGGTCTCGGCTGGTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGA-GAGAGTTTCCCTTGCTGGTGGGG-GTAAGAGGGACCTCCCCTGGAAAATCTTGATATCTTAAAAGCCAAATAATGCCTTATAGCAAGTTTTATAGTGTTTTAGGGGAAAGCTGGTTGTTATTTACTCCAACATTTTCA-CGCTGACATTTAGACGTTTTTATTAAGAAAGAAAAACTGTATGATGTATTAAACAGGAACTTTCACTGTTCCACTGGGTTGTAAA-CCCAATTCACTGCAAACTAATTAAGAGGAAAAAGGTGGTAAGCGGGTTTGTGTCGATGCTGCGGCCTCCCCCGGAAAGTAACATTGATATGATAG-TTAAAACAACAAATGCTGCA-TTCTAGTTAGCTTTTAAGATAAAAATATGGTTGTCATTTACT---GATGATTTTTTGTATTTAGTGACTTTAAAACATATTTTATCAA--TTGT-------TTTGGAGTG-----GAGAGTG---GGCAGAGTATATG--------CTGCCCCTCC--ACCTTAATATTGGGTGGAGGG---------GAAGAACATACGCCTTTGTTTTTACGCCACTTTCTGAGGCTTCGCCAGTTCGAATTGCAGCCGGCAGACACTTCATCCAAAAAGGCG--TAGTGACGCACTGTGCATATACATAAATTGACAAAACCTTAAATTTTGTGTGAAAAGTATTTATACCAAACA--GAAAATTACCAAGTTATAAATTCAAAATATAAAAA-ATCTAAAAAAAAA-------TCAATAACTATTATCGCAATATTTATATCGTCTTAATTTACCACTTTGAATAATTGGCATTATGTGTAAGCATGGTTTATAATTCTTTAACTTTCTAATACGATGTAGATTATATTTAAAAGTAAATTGATAACACATCGAAAAta
gi|4 : tttaaatattttatgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntatgg-GATATTTAAAAAG-CAAAAAAGC---ATTTTAGTAGATTTTAATTGGAAAATGGTTGTTATTTATACCAGTTTA---TGGGGTCCCTGCTGGTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGAAGAGAGTTTCCCTTGCAGGTGGGG-GTAAGAGTGACCTCCCCTGGAAAATCTTGATACGTTAAAAGCCAAAAAATGCATTATAGCAAGTTTTATAGTGTATAAGGGGAAAGCTGGTTGTTATTTACTCTAACATTTTCA-CGGTGACATTTAAACGTTTATATTAAGAAAGAAAAACTGTAAGATGTATTAAACAGGAACATTCACTGTTTCACTGGGTTGTAAAACCCAATTCACTGCAAACTTATTAAGAAGAAGAAGGTGGGAAGCGGGTTTGTGTCGATGCAGCGGCCTCCCCCGGAAAGTAACATTGATATAATAG-TTAAAACAACAAATGCTGCA-TTCTAGTTAGCTTTTAAGATAAACACATGGTTGTCCTTTACTCAAATT-TTTTTTTGTATTTTGTGACTTTTAAACATATTTTATCAA--TTTA-------TTTGGAGT------AGGGGTG---GGCAGAGTATATGGCATAATGCTGCCCCTCC--ACCTTAATATTTGGTG--GGGGGAGGGGGGGAGGAACATATGCCTTTGTTTTAACGCCACTTTTTGACGCTTCGCCAGTTTGAATTGCAGCCGGCAGACACTACATCCAAAAAGGCG--TAGTGACGCACTGTGCATATACATAAATTGACAAAACCTTAAATTGTGTGTGAAAAGTATTTATACCCAACA--GAAAAGTACCAAGTTATAAATTCAAAATAT-------------AAAAAA-------TCAATTACTATAATCACAATATTTATATCGTCTTAATTTACCATTTTGAATAATTGGCATTATGTGCCAGCATGTTTTATAAATCTTTAACCTTCTAATACGATGTCGATTATATTAAAAAGTTAATAGATAACACATTGAAAACAAC------------ATATTTATCTATCTTAAATATAAGGGAGGTCAGTATACATT----TCCGTA
gi|5 : aaAAGACATGATATTTT---CTAAAAGTATTTATATCCGACA--GAAAATTGCCTAGTTATAAATTCAAAATATAAGAA-AGCT--------ATTTTTTTTCAAAAACTATAATCGCAATATTT-TCTGGTCTTAATTTACCAATT-----------CATTATGTGCCACCATG-TTGATAAAGCT---ACGATAT-ATA-GATCAAGATTATATTAAAAAGTTAATAGATAACGCATTGAAAACGAC------------ATATTTATTTATTTTAAATATAAGGGGGGTCAATATACGTTTTCATCCGTAGCTAt
gi|6 : tagtaacaactgtcttaaatgtagattacttcaagtataATCTTCACCATTTGATCGATTATTATAAACGAGTGATAAATATGT--TAAACGTAGTTTACTCAATTTATAATTTTTATACAATTTAACATTTGATTTTAATTCATGTTAAATGGCTTGTAAATAAGTGTTACCGTGAGTTATATAGTAATACTACAAAAAAACATTTCTCGCGATTATTTACGTGTAAATGTATCATATATAAATTTTTATTGGCGTAGGAGCGTTTTAATTACTTAGGAGACCAACTTGGCGAAAGAGTGTAGGAGAAAGAAT----------------AATTGAGGCTACGGGGGCC-T-CCATCGGATTAC---TTTGAT--ATCTT-AAT-CCCCA--GCTGTTGCAT-TCAATGGAGTTGT-T--AAGATAAAGATAcatgtttttccaaaaccgtatattatttagtcttatttgtggggtatataaccttgatttactgatgtagatgtacatttatgtacac
gi|7 : ---TTTT-ATAAA-AAGAAAGTATAAAATTTATTTAAAAAAGT-----CGACCGGGTTTAAAACCC-------T-TGGA--GGGAGTGATACATG---------GTTT--TGCGGT------TATTGGGGTCC--ACCCTGGCAATAAGTTGATATTAAAAAAAACAACAACACGGAATTCTAGTAGAATTTAATTGTAAAATGGTTTTTATTTATACCAGTGTGGGAGGGGGTCT
gi|7 : ataGCCTACCCCGGAA--TAAGA---ATA-AAT---CTAAAACACCAAATGCTGCA-TTCTATAAAGTTTTCAGCAAAAAGGTATGGTTGAAATTTACTCTAGAattatgcctaccccggaataagaataaatctaaaacaccaaatgctgcattctataaagttttcagcaaaaaggtatggttgaaatttactctagagtgggagagggtg
gi|8 : atattttataaaaagaaagtataaaatttatttaaaaaagtcgaccgggtttaaaacccttggagggagtgatacatggttttgcggttattggggtccaccctggcaataagttgatattaaaaaaaacaacaacacggaattctagtagaatttaattgtaaaatggtttttatttataccagtgtgggagggggtctattatATCCAAAAAGGCGCGTAGTGGCGTACTATGCATGTACATAAATTGATAAAACCTTACATTTTGTTCGAAAAGTATTTATATCCGACACTG----TTTCCAAGTTATAAATTCAAAACATAAAAATACTT-GGAAAAAA-------TCAATAACTATGATCGC------TATATCGTCCTAATTCAACAATTTGAATAATTGGCATTATGTGCCATCGTGTTTTATAAAGCTTCAACTTTCTAATACGATGCAGATTCTATTAAGAAGTTAATAAGTAACACATTGAAAACAAC------------ATATTTA--TATCTTAGATATAAGGGgtgggagagggtg
gi|9 : TAAATTGACGAAACGTTAAGTTGTGTGCGAAAAGTATTTATATCCATCA--AAAAATT-----GTTATAAATTTAGAATATAACTTTATTT----------------TCAA-GACTATAATCGAAATATTTATATCGCCGTGTTTTACAAATTTGAATA-----TATTATATGCCCACGTGTGT-ATAAAACATTAACGTTCTAAAACGATATAATTTCTATTAAAATATTAATCGATAACATATTTAAAATGACATATTTATTAATATATTTATCTATTTTAAATATAA-ATGGATCAATATATGTT----TTCGTAATTa
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|22 ): GGGAGTAGGATTATCATTTACTCCAACAGTATTTGACTTTAAAACTCTTTTA
Alignments
lowQualScore : 111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 1 111 11 11 11 1 1 222222 1 11111 11 22 333333 222 1 1 111 1 1 1 11 111 1 111 000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 1 444444444444 1 2222 11 2222222 22222 111 22222222 11 11 333333333 11 222222222222222222222 333333333333 1111
lowQualScore : 0 7 3 7 777 33 33 33 3 0 0 0 0 333333 1 22 8 4 1 88888 11 0 1 8 0 33 0 0 3 0 1 3 3 0 66 666 333333 555 1 55 0 1 0 9 0 2 0 0 9 2 0 333 3 777 33 3 0 2 0 0 11 8 4 444 1 1 1 0 444 222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222 0 1 22 8 6 3 4 77 3 6 99 2 333333333333 2 1 0 2 3 55 3 1 11 8888 1 0 5 3 8 0 1 0 99 6666666 00000 444 99999999 11 11 222222222 0 11 1 77 3 444444444444444444444 1 1 1 1 1 3 1 1 1 1 444444444444 7777
lowQualScore : . . . . ... .. .. .. . . . . . ...... . .. . . . ..... .. . . . . .. . . . . . . . . .. ... ...... ... . .. . . . . . . . . . . . ... . ... .. . . . . . .. . . ... . . . . ... ...................................................................................................... . . .. . . . . .. . . .. . ............ . . . . . .. . . .. .... . . . . . . . . .. ....... ..... ... ........ .. .. ......... . .. . .. . ..................... . . . . . . . . . . ............ ....
lowQualScore : 7 3 3 0 555 88 88 88 5 0 0 7 8 000000 0 22 0 6 0 88888 00 8 4 0 6 88 8 8 8 8 1 2 0 5 99 444 111111 666 0 88 0 0 0 8 2 5 2 2 8 5 2 888 2 555 55 2 0 5 0 0 00 0 6 000 4 4 4 6 000 000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 0 0 00 0 7 5 2 22 2 7 22 5 555555555555 5 0 0 5 5 77 0 4 66 6666 0 7 7 3 0 8 4 8 44 0000000 00000 000 00000000 00 00 000000000 8 00 4 99 9 000000000000000000000 7 0 4 4 4 6 6 7 6 6 222222222222 0000
consensus : ATATTGACCATTTGATCGATTATTATAAACGAGTGATAAATATATTAAACGTTGTTTACTCAATTTAAATAAGTGTT-TAAAGTATTACCGTGTG---TTATTT--TGT--AATA--TTACAAAAAAANATT-CTCGCGA-TTATATACGTGCATATGTATCATATATAAATTTTCATTGGCGTAGGAGCCTTTTAATTACTTGGGAAGCAAACCTGGCGAGAGAGTGTAGGAGAAAGAATCCCCTCCCAT------AGTTGAGGGTACGGGGGCCT-CCATCGGATCAT---TTTGAT--ATCTTAAAT-CCAAA-GCTGTTGCGTTCAATGGAGTTGTTAGGATAAAGATATGATTGTTATTTACTCCAATANTTT--GTGA-TTT------AAACGC--TTTTATNAAGAAAAAAGTCTGAA-ATNTATT-AAAAAACTTACTTCGACCGGGTTTTAAACCCGTCACCTTATGCACTGGGAGCGAGNCGTGAGAG---GAGATCTGGGGGGTGTTATTTATTGGGCTTCTCC-CCCTG-CA-AAAAA--GATATTTAAAAAA-CAAAAACGC---ATTCTAGTAGATTTTAATTGGAAAATGGTTGTTATTTATACCAGTTTG---TGGGGTCTCTGCTGGTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCGA-GAGAGTTTCCCTTNCTGNNGGAG-GTAAGAGGGACC-TCCCCTGGAAAATCTTGATATCTTAAAAGTCAAATGATGCATTATAGCAAGTTTTAT-AGTGTATT--AGGGGAAAGCTGGTTGTTATTTACTCCAACATTTTCACGGTGACATTTAAACGTTTTTATTAAGAAAGAAAAACTGTAAGATGTATTAAACNGGAACTTTCACTGTTTCACTGGGTTGTAAA-CCCAATTCACTGCAAACTAATTAAGAGGAAGAAGGTGGGAAGCGGGTTTGTGTCGATGCTGCGGCCTCCCCCGGAAAGTAACATTGATATAAT-G-TTAAAACAACAAATGCTGCA-TTCTAGTTAGCTTTTAGGATAAAAATATGGTTGTCATTTACTCAAGAT-ATTTTTTGTATTTTGTGACTTTTAAACATATTTTATCAAATTTTT-------TTTGGAGTG-----AGGGGTG---GGCAGAGTATATG--------CTGCCCCTCC--ACCTTAATATTGGGTG--GGG---------GAGGAACATACGCCTTTGTTTTTACGCCACTTTCTGAAGCTTCGCCAGTTCGAATTGCAGCCGGCAGACACTACATCCAAAAAGGCG--TAGTGACGCACTGTGCATATACATAAATTGACAAAACCTTAAATTTTGTGCGAAAAGTATTTATACCCGACA--GAAAATTACCAAGTTATAAATTCAAAATATAAAAA-ATCT-AAAAAAAA-------TCAATAACTATAATCGCAATATTTATATCGTCTTAATTTACCANTTTGAATAATTGGCATTATGTGCCAGCGTGTTTTATAAATCTTTAACTTTCTAATACGATGTAGATTATATTAAAAAGTTAATAGATAACACATTGAAAACGACATAT------------TTATCTATCTTAAATATAAGGGGGGTCAATATACGTT----TCCGTAATTA
Reference ( family-1845 ) : ATATTGACCATTTGATCGATTATTATAAACGAGTGATAAATATATTAAACGTTGTTTACTCAATTTAAATAAGTGTT-TAAAGTATTACCGTGTG---TTATTT--TGT--AATA--TTACAAAAAAAAATT-CTCGCGA-TTATATACGTGCATATGTATCATATATAAATTTTCATTGGCGTAGGAGCCTTTTAATTACTTGGGAAGCAAACCTGGCGAGAGAGTGTAGGAGAAAGAATCCCCTCCCAT------AGTTGAGGGTACGGGGGCCT-CCGTCGGANCAT---TTTGAT--ATCTTAAAT-CCAAA-GCTGTTGCATTCAGTGGAGTTGTTAGGATAAAGATATGATTGTTATTTACTCCAATATTTT--GTGA-TTT------AAACG---TTTTATNAAGAAAAAAGTCTGAA-ATNTATT-AAAAAACTTACTTCGACCGGGTTTTAAACCCGTCACCTTATGCACTGGGAGCGAGNCGTGAGAG---GAGATCTGGGGGGTGTTATTTATTGGGCTTCTCC-CCCTG-CA-AAAAA--GATATTTAAAAAA-CAAAAACGC---ATTCTAGTAGATTTTAATTGGAAAATGGTTGTTATTTATACCAGTTTG---TGGGGTCTCTGCTGGTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCGA-GAGAGTTTCCCTTNCTGNNGGAG-GTAAGAGGGACC-TCCCCTGGAAAATCTTGATATCTTAAAAGTCAAATGATGCATTATAGCAAGTTTTAT-AGTGTATT--AGGGGAAAGCTGGTTGTTATTTACTC-AACATTTTCACGGTGACATTTAAACGTTTTTATTAAGAAAGAAAAACTGTAAGATGTATTAAACNGGAACTTTCACTGTTTCACTGGGTTGTAAA-CCCAATTCACTGCAAACTAATTAAGAGGAAGAAGGTGGGAAGCGGGTTTGTGTCGATGCTGCGGCCTCCCCCGGAAAGTAACATTGATATAAT-G-TTAAAACANCAAATGCTGCA-TTCTAGTTAGCTTTTAGGATAAAAATATGGTTGTCATTTACTCAAGAT-ATTTTTTGTATTTTGTGACTTTTAAACATATTTTATCAAATTTTT-------TTTGGAGTG-----AGGGGTG---GGCAGAGTATATG--------CTGCCCCTCC--ACCTTAATATTGGGTG--GGG---------GAGGAACATACGCCTTTGTTTTTACGCCACTTTCTGAAGCTTCGCCAGTTCGAATTGCAGCCGGCAGACACTACATCCAAAAAGGCG--TAGTGACGCACTGTGCATATACATAAATTGACAAAACCTTAAATTTTGTGCGAAAAGTATTTATACCCGACA--GAAAATTACCAAGTTATAAATTCAAAATATAAAAA-ATCT-AAAAAAAA-------TCAATAACTATAATCGCAATATTTATATCGTCTTAATTTACCANTTTGAATAATTGGCATTATGTGCCAGCGTGTTTTATAAATCTTTAACTTTCTAATACGATGTAGATTATATTAAAAAGTTAATAGATAACACATTGAAAACGACATAT------------TTATCTATCTTAAATATAAGGGGGGTCAATATACGTT----TCCGTAATTA
gi|1 : ATATTGACCATTTGATCGATTATTATAAACAAGTGATAAATATATTAAACGTTGTTTACTCAATTTAAATAAGTGTT-TAAAGTATTACCGTGTG---TTATTT--TGT--AATA--TTACAAAAAAAAATT-CTCGCAA-TTATATACATGCATATGTATCATATATAAATTTTCATTGGCGTAGGAGCCTTTTAATTACTTGGGAAGCAAACCTGGCGAGAGAGTGTAGGAGAAAGAATCCCCTCCCAT------AGTTGAGGATACGGGGGCCT-CCATCGGATCAT---TTTGAT--ATCTTAATT-CCAA--GCTGTTGCATTCAATGGAGTTGTTAAGATAAAGATATGATTGTCATA-ACTCCAATATTTT--GTGA-TTT------AAATA---TTTTATAAAGAAAAAAGTCTGAA-ATGTATT-AAAAAACTTACTTCGACCGGGTTTTAAACCCGTCACCTTATGCACTGGGAGCAAGCCGTGAGAG---GAGATCTGGGGGGTGTTATTTATTGGACTTCTCC-CCCTG-CA-AAAAA--GGTATTTAAAAAA-CAAAAATGC---AATCAAGAAGATTTTAATTGGAAAATGGTTGTT-TTTATACCAGTTTG---TGGGGTCTCTGCTGGTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCGA-GAGAGTTTCCCTTTCTGTAGGAG-GTAAGAGGGACC-TCCCCTGGAAAATCTTGATATCTTAAAAGTCAAATGATACATTATAGCAAGTTTTAT-AGTGTATT--AGGGGAAAGTTGGTGGTTACTT-------------CACGGTGACATTTAAACGTTTTTATTAAGAAAGAAAAACTGTAAGATGTATTAAACCGGAACTTTCACTATTTCACTGGGTTGTAAA-TTCAATTCACTGCAAACTAATTAAGAGGAAGAAGGTGGGAAGCGGGGTTGTGTCGATGCTGCGGCCTCCCCCGGAAAGTAACATTGATATAAT-GGTTAAAACAACAAATGCTGCA-CTCTAGTTGGCTTTTAAGATAAAAATATGGTTGTCATTTACTCAAGAT-ATTTTTTGTATTTTGTGTCTTTTAAACATATTTTATCAAATTTTT-------TTTGGAGTG-----AGGGGTG---GGCAGAGTATATG--------CTGCCCCTCC--ACCTTAATATTGGGTG--GGG---------GAGGAACATACGCCTTTGTTTTTACGCCACTTTCTGAAGCTTCGCCAGTTCAAATTGCAGCCAACAGACACTACATCCAAAAAGGCG--TAGTGACGCACTGTGCATATATATAAATTGACAAAACCTTAAATTTTGTGTGAAAAGTATTTATACCCAACA--GAAAATTACTAAGTTATAAATTCAAAATATAAAAA-ATCT-AAAAAAAA-------TCAATAACTATAATCGCAATATTTATATCGTCTTAATTTACCATTTTGAATTATTGGCATTATGTGCCAGCATGTTTCATAAATCTTTAGCTTTCTAATACGATGTAGATTATATTAAAACGGTAATAGATAACACATTGAAAACAACATAT------------TAATCTATTTTAAATATAAGGGGCGTCAATATACGTT----TCCGTAATTA
gi|10 : AAGAGAAATAGTGTGGTTAGCGGGTTTGTTGCGGTGCTGGGACCTTCCCCGAAAA--AA---------AA----TTAAAATATCAAATGTT-CATTTCTAGTTAGGTTTTAGGATAAAAATACGGTTGTCA-TTACTCCAGAT-G--TTTGGTATTTTGTGACACTTAGACAT-TTTTATCAATCCTTTACTCATATTTGGAATGATGTTAGGGGTGGCTGGAAAAGAATATG--------CTGCCACTCCCGACCTTAATATTGGGAG--AGG---------G
gi|11 : ATCTCGTCCCGTTGGTAGAGATGAGGG-ATGGAGGCTT-CT-CCGGAATAT------GAA--ATCTTAAAAACCAAATGCTGTTGTGT--AGCGAGTTTTTTAGGATAAAAATAAGATTTTTGGTTATTTCACTATTTT--TT---TTTACTTTGAAACGATTTTTTTTAAAGAAAAAAA---AAAGATTTATT-A
gi|12 : ggggtggggtttGGAGGGGTAACCCCCTCCTAT------TGGTGAGGGTACGGAGGACGACCCTCGAAACGTAAACATAATCAACATTAAAT-C--AT-GC-GTT----TTAGTGG-GTTTATAGGCTGAAAATATGAACGTTATTTACTCCAATAGCGTACGTCC-TTC------AAACGT--TTTTATTAAAGAAA
gi|13 : gGAGAGTAAAAGA------CCCTCAGAAATTTCTAACATCATCAGTATCAAATCATGCATTCTAACGAGTTTT-T-GCGGGATT--GGGGTA----TGATTATTATTTACTC---CA-TCTCAC--T----TTTAAATGCTTTTATTAAtacattcataa
gi|14 : gtaggggtagcccctcgtgttagtagggatacaGGGATCATCCGGTGGAAA---TGGATATCTTAAAAA-CAAA--ATGC--TGTCGCA-----TATTAGTAAATTTAAGGGGAAA-CTGATTGTTATTTATTCCAATATTTT----GTGACTTTTAAACGTTTTCATTAAGAa
gi|16 : tatggaggcgtggggagttgGGTATGCATATTATTTACTCCAATAGTAT--GTGA-CTTTA----AAACGC--TTTTATTAAGAAA
gi|17 : gggagatgAAAAGCGAATTTCAACCAGGTTTTAAACCCGTTACTTTTCGCACTGGGAGAGGGA--TGAGAGTGTGAGA------GGGTGTcacctacacaag
gi|18 : ttGGTATGCATATTATTTACTCCAATAGTAT--GTGA-CTTTA----AAACGC--TTTTATTAAGAAA
gi|19 : ggagatgCCCCGGAA-GT--TATTGATAT------CTAAAACACTTAATGCTTCA-TTGTAGTCAGTATTTAGGATAAAca
gi|2 : ATATTGACCATTTGATCGATTATTATAAACAAGTGATAAATATATTAAACGTTGTTTACTCAATTTAAATAAGTGTT-TAAAGTATTACCGTGTG---TTATTT--TGT--AATA--TTACAAAAAAAAATT-CTCGCAA-TTATATACATGCATATGTATCATATATAAATTTTCATTGGCGTAGGAGCCTTTTAATTACTTGGGAAGCAAACCTGGCGAGAGAGTGTAGGAGAAAGAATCCCCTCCCAT------AGTTGAGGATACGGGGGCCT-CCATCGGATCAT---TTTGAT--ATCTTAATT-CCAA--GCTGTTGCATTCAATGGAGTTGTTAAGATAAAGATATGATTGTCATA-ACTCCAATATTTT--GTGA-TTT------AAATA---TTTTATAAAGAAAAAAGTCTGAA-ATGTATT-AAAAAACTTACTTCGACCGGGTTTTAAACCCGTCACCTTATGCACTGGGAGCAAGCCGTGAGAG---GAGATCTGGGGGGTGTTATTTATTGGACTTCTCC-CCCTG-CA-AAAAA--GGTATTTAAAAAA-CAAAAATGC---AATCAAGAAGATTTTAATTGGAAAATGGTTGTT-TTTATACCAGTTTG---TGGGGTCTCTGCTGGTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCGA-GAGAGTTTCCCTTTCTGTAGGAG-GTAAGAGGGACC-TCCCCTGGAAAATCTTGATATCTTAAAAGTCAAATGATACATTATAGCAAGTTTTAT-AGTGTATT--AGGGGAAAGTTGGTGGTTACTT-------------CACGGTGACATTTAAACGTTTTTATTAAGAAAGAAAAACTGTAAGATGTATTAAACCGGAACTTTCACTATTTCACTGGGTTGTAAA-TTCAATTCACTGCAAACTAATTAAGAGGAAGAAGGTGGGAAGCGGGGTTGTGTCGATGCTGCGGCCTCCCCCGGAAAGTAACATTGATATAAT-GGTTAAAACAACAAATGCTGCA-CTCTAGTTGGCTTTTAAGATAAAAATATGGTTGTCATTTACTCAAGAT-ATTTTTTGTATTTTGTGTCTTTTAAACATATTTTATCAAATTTTT-------TTTGGAGTG-----AGGGGTG---GGCAGAGTATATG--------CTGCCCCTCC--ACCTTAATATTGGGTG--GGG---------GAGGAACATACGCCTTTGTTTTTACGCCACTTTCTGAAGCTTCGCCAGTTCAAATTGCAGCCGGCAGACACTACATCCAAAAAGGCG--TAGTGACGCACTGTGCATATATATAAATTGACAAAACCTTAAATTTTGTGTGAAAAGTATTTATACCCAACA--TAAAGTTACTAAGTTATAAATTCAAAATATAAAAA-ATAT-AAAAAAAA-------TCAATAACTATAATCGCAATATTTATATCGTCTTAATTTACCATTTTGAATAATTGGCATTATGTGCCAGCATGTTTTATAAATCTTTAACTTTCTAATACGATGTAGATTATATT------------------------AAAACGGCATAT------------TAATCTATCTTAAATATAAGGGGGGTCAATATACGTT----TCCGTTAT
gi|20 : tTATGCTTATTATTTACTCCAATAGTTT--GTGACTTT------AAACGC--TTTTATTAA
gi|21 : ggggtgGGGTAGGGGTATGATTATTATTTACTCCAATATTTT--TTAC-TTTA-----AAACG---CTTT
gi|3 : GGAGGGTGTTATATATTGGGCTTCTCC-TC-TG-CATAAAAA--GATATTTAAAAAA-CATACATGC---ATTCTAGTAGATTTTAATCGGAAAATGGTTGTTATTAATACCAGTTTG---TGGGGTCTCGGCTGGTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGA-GAGAGTTTCCCTTGCTGGTGGGG-GTAAGAGGGACC-TCCCCTGGAAAATCTTGATATCTTAAAAGCCAAATAATGCCTTATAGCAAGTTTTAT-AGTGTTTT--AGGGGAAAGCTGGTTGTTATTTACTCCAACATTTTCACGCTGACATTTAGACGTTTTTATTAAGAAAGAAAAACTGTATGATGTATTAAACAGGAACTTTCACTGTTCCACTGGGTTGTAAA-CCCAATTCACTGCAAACTAATTAAGAGGAAAAAGGTGGTAAGCGGGTTTGTGTCGATGCTGCGGCCTCCCCCGGAAAGTAACATTGATATGATAG-TTAAAACAACAAATGCTGCA-TTCTAGTTAGCTTTTAAGATAAAAATATGGTTGTCATTTACT---GATGATTTTTTGTATTTAGTGACTTTAAAACATATTTTATCAA--TTGT-------TTTGGAGTG-----GAGAGTG---GGCAGAGTATATG--------CTGCCCCTCC--ACCTTAATATTGGGTGGAGGG---------GAAGAACATACGCCTTTGTTTTTACGCCACTTTCTGAGGCTTCGCCAGTTCGAATTGCAGCCGGCAGACACTTCATCCAAAAAGGCG--TAGTGACGCACTGTGCATATACATAAATTGACAAAACCTTAAATTTTGTGTGAAAAGTATTTATACCAAACA--GAAAATTACCAAGTTATAAATTCAAAATATAAAAA-ATCTAAAAAAAAA-------TCAATAACTATTATCGCAATATTTATATCGTCTTAATTTACCACTTTGAATAATTGGCATTATGTGTAAGCATGGTTTATAATTCTTTAACTTTCTAATACGATGTAGATTATATTTAAAAGTAAATTGATAACACATCGAAAAta
gi|4 : tttaaatattttatgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntatgAA--GATATTTAAAAAG-CAAAAAAGC---ATTTTAGTAGATTTTAATTGGAAAATGGTTGTTATTTATACCAGTTTA---TGGGGTCCCTGCTGGTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGAAGAGAGTTTCCCTTGCAGGTGGGG-GTAAGAGTGACC-TCCCCTGGAAAATCTTGATACGTTAAAAGCCAAAAAATGCATTATAGCAAGTTTTAT-AGTGTATA--AGGGGAAAGCTGGTTGTTATTTACTCTAACATTTTCACGGTGACATTTAAACGTTTATATTAAGAAAGAAAAACTGTAAGATGTATTAAACAGGAACATTCACTGTTTCACTGGGTTGTAAAACCCAATTCACTGCAAACTTATTAAGAAGAAGAAGGTGGGAAGCGGGTTTGTGTCGATGCAGCGGCCTCCCCCGGAAAGTAACATTGATATAATAG-TTAAAACAACAAATGCTGCA-TTCTAGTTAGCTTTTAAGATAAACACATGGTTGTCCTTTACTCAAATT-TTTTTTTGTATTTTGTGACTTTTAAACATATTTTATCAA--TTTA-------TTTGGAGT------AGGGGTG---GGCAGAGTATATGGCATAATGCTGCCCCTCC--ACCTTAATATTTGGTG--GGGGGAGGGGGGGAGGAACATATGCCTTTGTTTTAACGCCACTTTTTGACGCTTCGCCAGTTTGAATTGCAGCCGGCAGACACTACATCCAAAAAGGCG--TAGTGACGCACTGTGCATATACATAAATTGACAAAACCTTAAATTGTGTGTGAAAAGTATTTATACCCAACA--GAAAAGTACCAAGTTATAAATTCAAAATAT-------------AAAAAA-------TCAATTACTATAATCACAATATTTATATCGTCTTAATTTACCATTTTGAATAATTGGCATTATGTGCCAGCATGTTTTATAAATCTTTAACCTTCTAATACGATGTCGATTATATTAAAAAGTTAATAGATAACACATTGAAAACAACATAT------------TTATCTATCTTAAATATAAGGGAGGTCAGTATACATT----TCCGTA
gi|5 : AAGACATGATATTTT---CTAAAAGTATTTATATCCGACA--GAAAATTGCCTAGTTATAAATTCAAAATATAAGAA-AGCT--------ATTTTTTTTCAAAAACTATAATCGCAATATTT-TCTGGTCTTAATTTACCAATT-----------CATTATGTGCCACCATG-TTGATAAAGCT---ACGATAT-ATA-GATCAAGATTATATTAAAAAGTTAATAGATAACGCATTGAAAACGACATAT------------TTATTTATTTTAAATATAAGGGGGGTCAATATACGTTTTCATCCGTAGCTAt
gi|6 : tagtaacaactgtcttaaatgtagattacttcaagtataATCTTCACCATTTGATCGATTATTATAAACGAGTGATAAATATGTTAAACGTAGTTTACTCAATTT--ATAATTTTTATACAAT-TTAACATTTGATTTTAATTCATGTTAAATGGCTTGTAAATAAGTGTT-ACCGTGAGTTATATAcatgtttttccaaaaccgtatattatttagtcttatttgtggggtatataaccttgatttactgatgtagatgtacatttatgtacac
gi|6 : AAGTGTTACCGTGAG---TTATAT--AGT--AATA--CTACAAAAAAACATTTCTCGCGA-TTATTTACGTGTAAATGTATCATATATAAATTTTTATTGGCGTAGGAGCGTTTTAATTACTTAGGAGACCAACTTGGCGAAAGAGTGTAGGAGAAAGA----------AT------AATTGAGGCTACGGGGGCCT-CCATCGGATTAC---TTTGAT--ATCTT-AAT-CCCCA-GCTGTTGCATTCAATGGAGTTGTTAAGATAAAGATAgtaatactacaaaaaaacatttctcgcgattatttacgtgtaaatgtatcatatataaatttttattggcgtaggagcgttttaattacttaggagaccaacttggcgaaagagtgtaggagaaagaataattgaggctacgggggcctccatcggattactttgatatcttaatccccagctgttgcattcaatggagttgttaagataaagata
gi|7 : atcttcaccatttgatcgattattataaacgagtgataaatatgttaaacgtagtttactcaatttataatttttatacaatttaacatttgattttaattcatgttaaatggcttgtaaat---TTTTATAAA-AAGAAAGTATAAA-ATTTATTTAAAAAAGT-----CGACCGGGTTTAAAACCC-------T-TGGA--GGGAGTGATACATG---------GTTTTGCGG--------TTATTGGGGT---CCACCCTGGCA-ATAAGTTGATATTAAAAAAAACAACAACACGGAATTCTAGTAGAATTTAATTGTAAAATGGTTTTTATTTATACCAGTGTGGGAGGGGGTCT
gi|7 : ataGTGGGAGG-GGGTCTAT-T--ATGC------CTACCCCGGAA--TAAGA---ATA-AAT---CTAAAACACCAAATGCTGCA-TTCTATAAAGTTTTCAGCAAAAAGGTATGGTTGAAATTTACTCTAGAattatgcctaccccggaataagaataaatctaaaacaccaaatgctgcattctataaagttttcagcaaaaaggtatggttgaaatttactctagagtgggagagggtg
gi|8 : atattttataaaaagaaagtataaaatttatttaaaaaagtcgaccgggtttaaaacccttggagggagtgatacatggttttgcggttattggggtccaccctggcaataagttgatattaaaaaaaacaacaacacggaattctagtagaatttaattgtaaaatggtttttatttataccagtATCCAAAAAGGCGCGTAGTGGCGTACTATGCATGTACATAAATTGATAAAACCTTACATTTTGTTCGAAAAGTATTTATATCCGACACTG----TTTCCAAGTTATAAATTCAAAACATAAAAATACTT-GGAAAAAA-------TCAATAACTATGATCGC------TATATCGTCCTAATTCAACAATTTGAATAATTGGCATTATGTGCCATCGTGTTTTATAAAGCTTCAACTTTCTAATACGATGCAGATTCTATTAAGAAGTTAATAAGTAACACATTGAAAACAACATAT------------TTA--TATCTTAGATATAAGGGgtgggagagggtg
gi|9 : TAAATTGACGAAACGTTAAGTTGTGTGCGAAAAGTATTTATATCCATCA--AAAAATT-----GTTATAAATTTAGAATATAACTTTATTT----------------TCAA-GACTATAATCGAAATATTTATATCGCCGTGTTTTACAAATTTGAATA-----TATTATATGCCCACGTGTGT-ATAAAACATTAACGTTCTAAAACGATATAATTTCTATTAAAATATTAATCGATAACATATTTAAAATGACATATTTATTAATATATTTATCTATTTTAAATATAA-ATGGATCAATATATGTT----TTCGTAATTa
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|15 ): GGAGGGTTAATCGTTTCTGTTGGTGAGGGACATAGAGAACGATCATTGGAAATCTTTAACTTTATCAACGTTAAATCGTGCATTCTTGTAAGGTTTTAGGG
Unaligned ( gi|22 ): GGGAGTAGGATTATCATTTACTCCAACAGTATTTGACTTTAAAACTCTTTTA
Alignments
lowQualScore : 111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 1 111 11 11 11 1 1 222222 11111 11 1111 333333 111 1 1 111 1 1 1 11 111 1 111 000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 1 222222222222 1 2222 11 2222222 22222 111 22222222 11 333333333333 11 222222222222222222222 333333333333 1111
lowQualScore : 0 7 3 7 777 33 33 33 1 0 0 0 0 333333 1 22 8 5 1 88888 11 0 1 8 9999 0 8 3 1 1 1 2 66 0 4 555555 000 1 55 0 1 0 9 0 2 0 0 9 2 0 333 3 777 33 3 0 2 0 0 11 8 4 444 1 1 1 0 444 222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222 0 1 22 8 6 3 4 77 3 6 99 2 444444444444 2 1 0 2 3 55 3 1 11 8888 1 0 5 3 8 0 1 0 99 6666666 00000 444 99999999 11 333333333333 0 11 1 77 3 444444444444444444444 1 1 1 1 1 3 1 1 1 1 444444444444 7777
lowQualScore : . . . . ... .. .. .. . . . . . ...... . .. . . . ..... .. . . . .... . . . . . . . .. . . ...... ... . .. . . . . . . . . . . . ... . ... .. . . . . . .. . . ... . . . . ... ...................................................................................................... . . .. . . . . .. . . .. . ............ . . . . . .. . . .. .... . . . . . . . . .. ....... ..... ... ........ .. ............ . .. . .. . ..................... . . . . . . . . . . ............ ....
lowQualScore : 7 3 3 0 555 88 88 88 0 0 0 7 8 000000 0 22 0 6 4 88888 00 8 4 0 8888 8 0 8 7 9 0 3 11 1 4 666666 888 0 88 0 0 0 8 2 5 2 2 8 5 2 888 2 555 55 2 0 5 0 0 00 0 6 000 4 4 4 6 000 000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 0 0 00 0 7 5 2 22 2 7 22 5 555555555555 5 0 0 5 5 77 0 4 66 6666 6 7 7 3 0 8 4 8 44 0000000 00000 000 00000000 00 000000000000 8 00 4 99 9 000000000000000000000 7 0 4 4 4 6 6 7 6 6 222222222222 0000
consensus : ATATTGACCATTTGATCGATTATTATAAACGAGTGATAAATATATTAAACGTTGTTTACTCAATTTAAATAAGTGTT-TAAAGTATTACCGTGTG---TTATTT--TGT--AATA--TTACAAAAAAANATT-CTCGCGA-TTATATACGTGCATATGTATCATATATAAATTTTCATTGGCGTAGGAGCCTTTTAATTACTTGGGAAGCAAACCTGGCGAGAGAGTGTAGGAGAAAGAATCCCCTCCCAT------AGTTGAGGGTACGGGGGCCT-CCATCGGATCAT---TTTGAT--ATCTTAAAT-CCAAA-GCTGTTGCGTTC-AATGGAGTTGTTAGGATAAAGATATGATTATTATTTACTCCAATAGTNT--GTGA-TTT------AAACG--CTTTTATNAAGAAAAAAGTCTGAA-ATNTATT-AAAAAACTTACTTCGACCGGGTTTTAAACCCGTCACCTTATGCACTGGGAGCGAGNCGTGAGAG---GAGATCTGGGGGGTGTTATTTATTGGGCTTCTCC-CCCTG-CA-AAAAA--GATATTTAAAAAA-CAAAAACGC---ATTCTAGTAGATTTTAATTGGAAAATGGTTGTTATTTATACCAGTTTG---TGGGGTCTCTGCTGGTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCGA-GAGAGTTTCCCTTNCTGNNGGAG-GTAAGAGGGACC-TCCCCTGGAAAATCTTGATATCTTAAAAGTCAAATGATGCATTATAGCAAGTTTTAT-AGTGTATT--AGGGGAAAGCTGGTTGTTATTTACTCCAACATTTTCACGGTGACATTTAAACGTTTTTATTAAGAAAGAAAAACTGTAAGATGTATTAAACNGGAACTTTCACTGTTTCACTGGGTTGT-AAACCCAATTCACTGCAAACTAATTAAGAGGAAGAAGGTGGGAAGCGGGTTTGTGTCGATGCTGCGGCCTCCCCCGGAAAGTAACATTGATATAAT-G-TTAAAACAACAAATGCTGCA-TTCTAGTTAGCTTTTAGGATAAAAATATGGTTGTCATTTACTCAAGAT-ATTTTTTGTATTTTGTGACTTTTAAACATATTTTATCAAATTTTT-------TTTGGAGTG-----AGGGGTG---GGCAGAGTAT--------ATGCTGCCCCTCC--ACCTTAATATTGGGT---------G--GGGGAGGAACATACGCCTTTGTTTTTACGCCACTTTCTGAAGCTTCGCCAGTTCGAATTGCAGCCGGCAGACACTACATCCAAAAAGGCG--TAGTGACGCACTGTGCATATACATAAATTGACAAAACCTTAAATTTTGTGCGAAAAGTATTTATACCCGACA--GAAAATTACCAAGTTATAAATTCAAAATATAAAAA-ATCT-AAAAAAAA-------TCAATAACTATAATCGCAATATTTATATCGTCTTAATTTACCANTTTGAATAATTGGCATTATGTGCCAGCGTGTTTTATAAATCTTTAACTTTCTAATACGATGTAGATTATATTAAAAAGTTAATAGATAACACATTGAAAACGACATAT------------TTATCTATCTTAAATATAAGGGGGGTCAATATACGTT----TCCGTAATTA
Reference ( family-1845 ) : ATATTGACCATTTGATCGATTATTATAAACGAGTGATAAATATATTAAACGTTGTTTACTCAATTTAAATAAGTGTT-TAAAGTATTACCGTGTG---TTATTT--TGT--AATA--TTACAAAAAAANATT-CTCGCGA-TTATATACGTGCATATGTATCATATATAAATTTTCATTGGCGTAGGAGCCTTTTAATTACTTGGGAAGCAAACCTGGCGAGAGAGTGTAGGAGAAAGAATCCCCTCCCAT------AGTTGAGGGTACGGGGGCCT-CCATCGGATCAT---TTTGAT--ATCTTAAAT-CCAAA-GCTGTTGCGTTC-AATGGAGTTGTTAGGATAAAGATATGATTGTTATTTACTCCAATANTTT--GTGA-TTT------AAACG--CTTTTATNAAGAAAAAAGTCTGAA-ATNTATT-AAAAAACTTACTTCGACCGGGTTTTAAACCCGTCACCTTATGCACTGGGAGCGAGNCGTGAGAG---GAGATCTGGGGGGTGTTATTTATTGGGCTTCTCC-CCCTG-CA-AAAAA--GATATTTAAAAAA-CAAAAACGC---ATTCTAGTAGATTTTAATTGGAAAATGGTTGTTATTTATACCAGTTTG---TGGGGTCTCTGCTGGTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCGA-GAGAGTTTCCCTTNCTGNNGGAG-GTAAGAGGGACC-TCCCCTGGAAAATCTTGATATCTTAAAAGTCAAATGATGCATTATAGCAAGTTTTAT-AGTGTATT--AGGGGAAAGCTGGTTGTTATTTACTCCAACATTTTCACGGTGACATTTAAACGTTTTTATTAAGAAAGAAAAACTGTAAGATGTATTAAACNGGAACTTTCACTGTTTCACTGGGTTGT-AAACCCAATTCACTGCAAACTAATTAAGAGGAAGAAGGTGGGAAGCGGGTTTGTGTCGATGCTGCGGCCTCCCCCGGAAAGTAACATTGATATAAT-G-TTAAAACAACAAATGCTGCA-TTCTAGTTAGCTTTTAGGATAAAAATATGGTTGTCATTTACTCAAGAT-ATTTTTTGTATTTTGTGACTTTTAAACATATTTTATCAAATTTTT-------TTTGGAGTG-----AGGGGTG---GGCAGAGTAT--------ATGCTGCCCCTCC--ACCTTAATATTGGGT---------G--GGGGAGGAACATACGCCTTTGTTTTTACGCCACTTTCTGAAGCTTCGCCAGTTCGAATTGCAGCCGGCAGACACTACATCCAAAAAGGCG--TAGTGACGCACTGTGCATATACATAAATTGACAAAACCTTAAATTTTGTGCGAAAAGTATTTATACCCGACA--GAAAATTACCAAGTTATAAATTCAAAATATAAAAA-ATCT-AAAAAAAA-------TCAATAACTATAATCGCAATATTTATATCGTCTTAATTTACCANTTTGAATAATTGGCATTATGTGCCAGCGTGTTTTATAAATCTTTAACTTTCTAATACGATGTAGATTATATTAAAAAGTTAATAGATAACACATTGAAAACGACATAT------------TTATCTATCTTAAATATAAGGGGGGTCAATATACGTT----TCCGTAATTA
gi|1 : ATATTGACCATTTGATCGATTATTATAAACAAGTGATAAATATATTAAACGTTGTTTACTCAATTTAAATAAGTGTT-TAAAGTATTACCGTGTG---TTATTT--TGT--AATA--TTACAAAAAAAAATT-CTCGCAA-TTATATACATGCATATGTATCATATATAAATTTTCATTGGCGTAGGAGCCTTTTAATTACTTGGGAAGCAAACCTGGCGAGAGAGTGTAGGAGAAAGAATCCCCTCCCAT------AGTTGAGGATACGGGGGCCT-CCATCGGATCAT---TTTGAT--ATCTTAATT-CCAA--GCTGTTGCATTC-AATGGAGTTGTTAAGATAAAGATATGATTGTCATA-ACTCCAATATTTT--GTGA-TTT------AAATA---TTTTATAAAGAAAAAAGTCTGAA-ATGTATT-AAAAAACTTACTTCGACCGGGTTTTAAACCCGTCACCTTATGCACTGGGAGCAAGCCGTGAGAG---GAGATCTGGGGGGTGTTATTTATTGGACTTCTCC-CCCTG-CA-AAAAA--GGTATTTAAAAAA-CAAAAATGC---AATCAAGAAGATTTTAATTGGAAAATGGTTGTT-TTTATACCAGTTTG---TGGGGTCTCTGCTGGTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCGA-GAGAGTTTCCCTTTCTGTAGGAG-GTAAGAGGGACC-TCCCCTGGAAAATCTTGATATCTTAAAAGTCAAATGATACATTATAGCAAGTTTTAT-AGTGTATT--AGGGGAAAGTTGGTGGTTACTT-------------CACGGTGACATTTAAACGTTTTTATTAAGAAAGAAAAACTGTAAGATGTATTAAACCGGAACTTTCACTATTTCACTGGGTTGT-AAATTCAATTCACTGCAAACTAATTAAGAGGAAGAAGGTGGGAAGCGGGGTTGTGTCGATGCTGCGGCCTCCCCCGGAAAGTAACATTGATATAAT-GGTTAAAACAACAAATGCTGCA-CTCTAGTTGGCTTTTAAGATAAAAATATGGTTGTCATTTACTCAAGAT-ATTTTTTGTATTTTGTGTCTTTTAAACATATTTTATCAAATTTTT-------TTTGGAGTG-----AGGGGTG---GGCAGAGTAT--------ATGCTGCCCCTCC--ACCTTAATATTGGGT---------G--GGGGAGGAACATACGCCTTTGTTTTTACGCCACTTTCTGAAGCTTCGCCAGTTCAAATTGCAGCCAACAGACACTACATCCAAAAAGGCG--TAGTGACGCACTGTGCATATATATAAATTGACAAAACCTTAAATTTTGTGTGAAAAGTATTTATACCCAACA--GAAAATTACTAAGTTATAAATTCAAAATATAAAAA-ATCT-AAAAAAAA-------TCAATAACTATAATCGCAATATTTATATCGTCTTAATTTACCATTTTGAATTATTGGCATTATGTGCCAGCATGTTTCATAAATCTTTAGCTTTCTAATACGATGTAGATTATATTAAAACGGTAATAGATAACACATTGAAAACAACATAT------------TAATCTATTTTAAATATAAGGGGCGTCAATATACGTT----TCCGTAATTA
gi|10 : AAGAGAAATAGTGTGGTTAGCGGGTTTGTTGCGGTGCTGGGACCTTCCCCGAAAA--AA---------AA----TTAAAATATCAAATGTT-CATTTCTAGTTAGGTTTTAGGATAAAAATACGGTTGTCA-TTACTCCAGAT-G--TTTGGTATTTTGTGACACTTAGACAT-TTTTATCAATCCTTTACTCATATTTGGAATGATGTTAGGGGTGGCTGGAAAAGAAT--------ATGCTGCCACTCCCGACCTTAATATTGGGA---------G--AGGG
gi|11 : ATCTCGTCCCGTTGGTAGAGATGAGGG-ATGGAGGCTT-CT-CCGGAATAT------GAA--ATCTTAAAAACCAAATGCTGTTGTGT---AGCGAGTTTTTTAGGATAAAAATAAGATTTTTGGTTATTTCACTATTTT--TT---TTTACTTTGAAACGATTTTTTTTAAAGAAAAAAA---AAAGATTTATT-A
gi|12 : ggggtggggtttGGAGGGGTAACCCCCTCCTAT------TGGTGAGGGTACGGAGGACGACCCTCGAAACGTAAACATAATCAACATTAAAT-C---A------TGCGTTTTAGTGG-GTTTATAGGCTGAAAATATGAACGTTATTTACTCCAATAGCGTACGTCC-TTC------AAACG--TTTTTATTAAAGAAA
gi|13 : gGAGAGTAAAAGA------CCCTCAGAAATTTCTAACATCATCAGTATCAAATCATGCATTCTAACGAGTTTT-T-GCGGGATT--GGGGTA----TGATTATTATTTACTCCA----TCTCAC--T----TTTAAATGCTTTTATTAAtacattcataa
gi|14 : gtaggggtagcccctcgtgttagtagggatacaGGGATCATCCGGTGGAAA---TGGATATCTTAAAAA-CAAA--ATGC--TGTCGCA-----TATTAGTAAATTTAAGGGGAAA-CTGATTGTTATTTATTCCAATATTTT----GTGACTTTTAAACGTTTTCATTAAGAa
gi|16 : tatggaggcgtggggagttgGGTATGCATATTATTTACTCCAATAGTAT--GTGA-CTTTA----AAACG--CTTTTATTAAGAAA
gi|17 : gggagatgAAAAGCGAATTTCAACCAGGTTTTAAACCCGTTACTTTTCGCACTGGGAGAGGGA--TGAGAGTGTGAGA------GGGTGTcacctacacaag
gi|18 : ttGGTATGCATATTATTTACTCCAATAGTAT--GTGA-CTTTA----AAACG--CTTTTATTAAGAAA
gi|19 : ggagatgCCCCGGAA-GT--TATTGATAT------CTAAAACACTTAATGCTTCA-TTGTAGTCAGTATTTAGGATAAAca
gi|2 : ATATTGACCATTTGATCGATTATTATAAACAAGTGATAAATATATTAAACGTTGTTTACTCAATTTAAATAAGTGTT-TAAAGTATTACCGTGTG---TTATTT--TGT--AATA--TTACAAAAAAAAATT-CTCGCAA-TTATATACATGCATATGTATCATATATAAATTTTCATTGGCGTAGGAGCCTTTTAATTACTTGGGAAGCAAACCTGGCGAGAGAGTGTAGGAGAAAGAATCCCCTCCCAT------AGTTGAGGATACGGGGGCCT-CCATCGGATCAT---TTTGAT--ATCTTAATT-CCAA--GCTGTTGCATTC-AATGGAGTTGTTAAGATAAAGATATGATTGTCATA-ACTCCAATATTTT--GTGA-TTT------AAATA---TTTTATAAAGAAAAAAGTCTGAA-ATGTATT-AAAAAACTTACTTCGACCGGGTTTTAAACCCGTCACCTTATGCACTGGGAGCAAGCCGTGAGAG---GAGATCTGGGGGGTGTTATTTATTGGACTTCTCC-CCCTG-CA-AAAAA--GGTATTTAAAAAA-CAAAAATGC---AATCAAGAAGATTTTAATTGGAAAATGGTTGTT-TTTATACCAGTTTG---TGGGGTCTCTGCTGGTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCGA-GAGAGTTTCCCTTTCTGTAGGAG-GTAAGAGGGACC-TCCCCTGGAAAATCTTGATATCTTAAAAGTCAAATGATACATTATAGCAAGTTTTAT-AGTGTATT--AGGGGAAAGTTGGTGGTTACTT-------------CACGGTGACATTTAAACGTTTTTATTAAGAAAGAAAAACTGTAAGATGTATTAAACCGGAACTTTCACTATTTCACTGGGTTGT-AAATTCAATTCACTGCAAACTAATTAAGAGGAAGAAGGTGGGAAGCGGGGTTGTGTCGATGCTGCGGCCTCCCCCGGAAAGTAACATTGATATAAT-GGTTAAAACAACAAATGCTGCA-CTCTAGTTGGCTTTTAAGATAAAAATATGGTTGTCATTTACTCAAGAT-ATTTTTTGTATTTTGTGTCTTTTAAACATATTTTATCAAATTTTT-------TTTGGAGTG-----AGGGGTG---GGCAGAGTAT--------ATGCTGCCCCTCC--ACCTTAATATTGGGT---------G--GGGGAGGAACATACGCCTTTGTTTTTACGCCACTTTCTGAAGCTTCGCCAGTTCAAATTGCAGCCGGCAGACACTACATCCAAAAAGGCG--TAGTGACGCACTGTGCATATATATAAATTGACAAAACCTTAAATTTTGTGTGAAAAGTATTTATACCCAACA--TAAAGTTACTAAGTTATAAATTCAAAATATAAAAA-ATAT-AAAAAAAA-------TCAATAACTATAATCGCAATATTTATATCGTCTTAATTTACCATTTTGAATAATTGGCATTATGTGCCAGCATGTTTTATAAATCTTTAACTTTCTAATACGATGTAGATTATATT------------------------AAAACGGCATAT------------TAATCTATCTTAAATATAAGGGGGGTCAATATACGTT----TCCGTTAT
gi|20 : tTATGCTTATTATTTACTCCAATAGTTT--GTGACTTT------AAACG--CTTTTATTAA
gi|21 : ggggtgGGGTAGGGGTATGATTATTATTTACTCCAATATTTT--TTAC-TTTA-----AAACG--CTTTTA
gi|22 : TAGGATTATCATTTACTCCAACAGTAT--TTGA-CTTTA----AAACT--CTTTTA
gi|3 : gggagGGAGGGTGTTATATATTGGGCTTCTCC-TC-TG-CATAAAAA--GATATTTAAAAAA-CATACATGC---ATTCTAGTAGATTTTAATCGGAAAATGGTTGTTATTAATACCAGTTTG---TGGGGTCTCGGCTGGTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGA-GAGAGTTTCCCTTGCTGGTGGGG-GTAAGAGGGACC-TCCCCTGGAAAATCTTGATATCTTAAAAGCCAAATAATGCCTTATAGCAAGTTTTAT-AGTGTTTT--AGGGGAAAGCTGGTTGTTATTTACTCCAACATTTTCACGCTGACATTTAGACGTTTTTATTAAGAAAGAAAAACTGTATGATGTATTAAACAGGAACTTTCACTGTTCCACTGGGTTGT-AAACCCAATTCACTGCAAACTAATTAAGAGGAAAAAGGTGGTAAGCGGGTTTGTGTCGATGCTGCGGCCTCCCCCGGAAAGTAACATTGATATGATAG-TTAAAACAACAAATGCTGCA-TTCTAGTTAGCTTTTAAGATAAAAATATGGTTGTCATTTACT---GATGATTTTTTGTATTTAGTGACTTTAAAACATATTTTATCAA--TTGT-------TTTGGAGTG-----GAGAGTG---GGCAGAGTAT--------ATGCTGCCCCTCC--ACCTTAATATTGGGT---------GGAGGGGAAGAACATACGCCTTTGTTTTTACGCCACTTTCTGAGGCTTCGCCAGTTCGAATTGCAGCCGGCAGACACTTCATCCAAAAAGGCG--TAGTGACGCACTGTGCATATACATAAATTGACAAAACCTTAAATTTTGTGTGAAAAGTATTTATACCAAACA--GAAAATTACCAAGTTATAAATTCAAAATATAAAAA-ATCTAAAAAAAAA-------TCAATAACTATTATCGCAATATTTATATCGTCTTAATTTACCACTTTGAATAATTGGCATTATGTGTAAGCATGGTTTATAATTCTTTAACTTTCTAATACGATGTAGATTATATTTAAAAGTAAATTGATAACACATCGAAAA
gi|4 : tttaaatattttatgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntatgAA--GATATTTAAAAAG-CAAAAAAGC---ATTTTAGTAGATTTTAATTGGAAAATGGTTGTTATTTATACCAGTTTA---TGGGGTCCCTGCTGGTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGAAGAGAGTTTCCCTTGCAGGTGGGG-GTAAGAGTGACC-TCCCCTGGAAAATCTTGATACGTTAAAAGCCAAAAAATGCATTATAGCAAGTTTTAT-AGTGTATA--AGGGGAAAGCTGGTTGTTATTTACTCTAACATTTTCACGGTGACATTTAAACGTTTATATTAAGAAAGAAAAACTGTAAGATGTATTAAACAGGAACATTCACTGTTTCACTGGGTTGTAAAACCCAATTCACTGCAAACTTATTAAGAAGAAGAAGGTGGGAAGCGGGTTTGTGTCGATGCAGCGGCCTCCCCCGGAAAGTAACATTGATATAATAG-TTAAAACAACAAATGCTGCA-TTCTAGTTAGCTTTTAAGATAAACACATGGTTGTCCTTTACTCAAATT-TTTTTTTGTATTTTGTGACTTTTAAACATATTTTATCAA--TTTA-------TTTGGAGT------AGGGGTG---GGCAGAGTATATGGCATAATGCTGCCCCTCC--ACCTTAATATTTGGTGGGGGGAGGG--GGGGAGGAACATATGCCTTTGTTTTAACGCCACTTTTTGACGCTTCGCCAGTTTGAATTGCAGCCGGCAGACACTACATCCAAAAAGGCG--TAGTGACGCACTGTGCATATACATAAATTGACAAAACCTTAAATTGTGTGTGAAAAGTATTTATACCCAACA--GAAAAGTACCAAGTTATAAATTCAAAATAT-------------AAAAAA-------TCAATTACTATAATCACAATATTTATATCGTCTTAATTTACCATTTTGAATAATTGGCATTATGTGCCAGCATGTTTTATAAATCTTTAACCTTCTAATACGATGTCGATTATATTAAAAAGTTAATAGATAACACATTGAAAACAACATAT------------TTATCTATCTTAAATATAAGGGAGGTCAGTATACATT----TCCGTA
gi|5 : AAGACATGATATTTT---CTAAAAGTATTTATATCCGACA--GAAAATTGCCTAGTTATAAATTCAAAATATAAGAA-AGCT--------ATTTTTTTTCAAAAACTATAATCGCAATATTT-TCTGGTCTTAATTTACCAATT-----------CATTATGTGCCACCATG-TTGATAAAGCT---ACGATAT-ATA-GATCAAGATTATATTAAAAAGTTAATAGATAACGCATTGAAAACGACATAT------------TTATTTATTTTAAATATAAGGGGGGTCAATATACGTTTTCATCCGTAGCTAt
gi|6 : tagtaacaactgtcttaaatgtagattacttcaagtataATCTTCACCATTTGATCGATTATTATAAACGAGTGATAAATATGTTAAACGTAGTTTACTCAATTT--ATAATTTTTATACAAT-TTAACATTTGATTTTAATTCATGTTAAATGGCTTGTAAATAAGTGTT-ACCGTGAGTTATATAcatgtttttccaaaaccgtatattatttagtcttatttgtggggtatataaccttgatttactgatgtagatgtacatttatgtacac
gi|6 : AAGTGTTACCGTGAG---TTATAT--AGT--AATA--CTACAAAAAAACATTTCTCGCGA-TTATTTACGTGTAAATGTATCATATATAAATTTTTATTGGCGTAGGAGCGTTTTAATTACTTAGGAGACCAACTTGGCGAAAGAGTGTAGGAGAAAGA----------AT------AATTGAGGCTACGGGGGCCT-CCATCGGATTAC---TTTGAT--ATCTT-AAT-CCCCA-GCTGTTGCATTC-AATGGAGTTGTTAAGATAAAGATAgtaatactacaaaaaaacatttctcgcgattatttacgtgtaaatgtatcatatataaatttttattggcgtaggagcgttttaattacttaggagaccaacttggcgaaagagtgtaggagaaagaataattgaggctacgggggcctccatcggattactttgatatcttaatccccagctgttgcattcaatggagttgttaagataaagata
gi|7 : atcttcaccatttgatcgattattataaacgagtgataaatatgttaaacgtagtttactcaatttataatttttatacaatttaacatttgattttaattcatgttaaatggcttgtaaatTTTTATAAA-AAGAAAGTATAAA-ATTTATTTAAAAAAGT-----CGACCGGGTTTAAAACCC-------T-TGGA--GGGAGTGATACATG---------GTTTTGCGG--------TTATTGGGGT---CCACCCTGGCA-ATAAGTTGATATTAAAAAAAACAACAACACGGAATTCTAGTAGAATTTAATTGTAAAATGGTTTTTATTTATACCAGTGTGGGAGGGGGTCT
gi|7 : ataGTGGGAGG-GGGTCTAT-T--ATGC------CTACCCCGGAA--TAAGA---ATA-AAT---CTAAAACACCAAATGCTGCA-TTCTATAAAGTTTTCAGCAAAAAGGTATGGTTGAAATTTACTCTAGAattatgcctaccccggaataagaataaatctaaaacaccaaatgctgcattctataaagttttcagcaaaaaggtatggttgaaatttactctagagtgggagagggtg
gi|8 : atattttataaaaagaaagtataaaatttatttaaaaaagtcgaccgggtttaaaacccttggagggagtgatacatggttttgcggttattggggtccaccctggcaataagttgatattaaaaaaaacaacaacacggaattctagtagaatttaattgtaaaatggtttttatttataccagtATCCAAAAAGGCGCGTAGTGGCGTACTATGCATGTACATAAATTGATAAAACCTTACATTTTGTTCGAAAAGTATTTATATCCGACACTG----TTTCCAAGTTATAAATTCAAAACATAAAAATACTT-GGAAAAAA-------TCAATAACTATGATCGC------TATATCGTCCTAATTCAACAATTTGAATAATTGGCATTATGTGCCATCGTGTTTTATAAAGCTTCAACTTTCTAATACGATGCAGATTCTATTAAGAAGTTAATAAGTAACACATTGAAAACAACATAT------------TTA--TATCTTAGATATAAGGGgtgggagagggtg
gi|9 : TAAATTGACGAAACGTTAAGTTGTGTGCGAAAAGTATTTATATCCATCA--AAAAATT-----GTTATAAATTTAGAATATAACTTTATTT----------------TCAA-GACTATAATCGAAATATTTATATCGCCGTGTTTTACAAATTTGAATA-----TATTATATGCCCACGTGTGT-ATAAAACATTAACGTTCTAAAACGATATAATTTCTATTAAAATATTAATCGATAACATATTTAAAATGACATATTTATTAATATATTTATCTATTTTAAATATAA-ATGGATCAATATATGTT----TTCGTAATTa
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|15 ): GGAGGGTTAATCGTTTCTGTTGGTGAGGGACATAGAGAACGATCATTGGAAATCTTTAACTTTATCAACGTTAAATCGTGCATTCTTGTAAGGTTTTAGGG
Alignments
lowQualScore : 111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 1 111 11 11 11 1 1 222222 11111 11 1111 333333 111 1 1 111 1 1 1 11 111 1 111 000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 1 222222222222 1 2222 11 2222222 22222 111 22222222 11 333333333333 11 222222222222222222222 333333333333 1111
lowQualScore : 0 7 3 7 777 33 33 33 1 0 0 0 0 333333 1 22 8 5 1 88888 11 0 1 8 9999 0 8 3 1 777 1 0 4 555555 000 1 55 0 1 0 9 0 2 0 0 9 2 0 333 3 777 33 3 0 2 0 0 11 8 4 444 1 1 1 0 444 222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222 0 1 22 8 6 3 4 77 3 6 99 2 444444444444 2 1 0 2 3 55 3 1 11 8888 1 0 5 3 8 0 1 0 99 6666666 00000 444 99999999 11 333333333333 0 11 1 77 3 444444444444444444444 1 1 1 1 1 3 1 1 1 1 444444444444 7777
lowQualScore : . . . . ... .. .. .. . . . . . ...... . .. . . . ..... .. . . . .... . . . . ... . . . ...... ... . .. . . . . . . . . . . . ... . ... .. . . . . . .. . . ... . . . . ... ...................................................................................................... . . .. . . . . .. . . .. . ............ . . . . . .. . . .. .... . . . . . . . . .. ....... ..... ... ........ .. ............ . .. . .. . ..................... . . . . . . . . . . ............ ....
lowQualScore : 7 3 3 0 555 88 88 88 0 0 0 7 8 000000 0 22 0 6 4 88888 00 8 4 0 8888 8 0 8 9 222 0 1 4 666666 888 0 88 0 0 0 8 2 5 2 2 8 5 2 888 2 555 55 2 0 5 0 0 00 0 6 000 4 4 4 6 000 000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 0 0 00 0 7 5 2 22 2 7 22 5 555555555555 5 0 0 5 5 77 0 4 66 6666 6 7 7 3 0 8 4 8 44 0000000 00000 000 00000000 00 000000000000 8 00 4 99 9 000000000000000000000 7 0 4 4 4 6 6 7 6 6 222222222222 0000
consensus : ATATTGACCATTTGATCGATTATTATAAACGAGTGATAAATATATTAAACGTTGTTTACTCAATTTAAATAAGTGTT-TAAAGTATTACCGTGTG---TTATTT--TGT--AATA--TTACAAAAAAANATT-CTCGCGA-TTATATACGTGCATATGTATCATATATAAATTTTCATTGGCGTAGGAGCCTTTTAATTACTTGGGAAGCAAACCTGGCGAGAGAGTGTAGGAGAAAGAATCCCCTCCCAT------AGTTGAGGGTACGGGGGCCT-CCATCGGATCAT---TTTGAT--ATCTTAAAT-CCAAA-GCTGTTGCGTTC-AATGGAGTTGTTAGGATAAAGATATGATTATTATTTACTCCAATA--GTNTGTGA-TTT------AAACG--CTTTTATNAAGAAAAAAGTCTGAA-ATNTATT-AAAAAACTTACTTCGACCGGGTTTTAAACCCGTCACCTTATGCACTGGGAGCGAGNCGTGAGAG---GAGATCTGGGGGGTGTTATTTATTGGGCTTCTCC-CCCTG-CA-AAAAA--GATATTTAAAAAA-CAAAAACGC---ATTCTAGTAGATTTTAATTGGAAAATGGTTGTTATTTATACCAGTTTG---TGGGGTCTCTGCTGGTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCGA-GAGAGTTTCCCTTNCTGNNGGAG-GTAAGAGGGACC-TCCCCTGGAAAATCTTGATATCTTAAAAGTCAAATGATGCATTATAGCAAGTTTTAT-AGTGTATT--AGGGGAAAGCTGGTTGTTATTTACTCCAACATTTTCACGGTGACATTTAAACGTTTTTATTAAGAAAGAAAAACTGTAAGATGTATTAAACNGGAACTTTCACTGTTTCACTGGGTTGT-AAACCCAATTCACTGCAAACTAATTAAGAGGAAGAAGGTGGGAAGCGGGTTTGTGTCGATGCTGCGGCCTCCCCCGGAAAGTAACATTGATATAAT-G-TTAAAACAACAAATGCTGCA-TTCTAGTTAGCTTTTAGGATAAAAATATGGTTGTCATTTACTCAAGAT-ATTTTTTGTATTTTGTGACTTTTAAACATATTTTATCAAATTTTT-------TTTGGAGTG-----AGGGGTG---GGCAGAGTAT--------ATGCTGCCCCTCC--ACCTTAATATTGGGT---------G--GGGGAGGAACATACGCCTTTGTTTTTACGCCACTTTCTGAAGCTTCGCCAGTTCGAATTGCAGCCGGCAGACACTACATCCAAAAAGGCG--TAGTGACGCACTGTGCATATACATAAATTGACAAAACCTTAAATTTTGTGCGAAAAGTATTTATACCCGACA--GAAAATTACCAAGTTATAAATTCAAAATATAAAAA-ATCT-AAAAAAAA-------TCAATAACTATAATCGCAATATTTATATCGTCTTAATTTACCANTTTGAATAATTGGCATTATGTGCCAGCGTGTTTTATAAATCTTTAACTTTCTAATACGATGTAGATTATATTAAAAAGTTAATAGATAACACATTGAAAACGACATAT------------TTATCTATCTTAAATATAAGGGGGGTCAATATACGTT----TCCGTAATTA
Reference ( family-1845 ) : ATATTGACCATTTGATCGATTATTATAAACGAGTGATAAATATATTAAACGTTGTTTACTCAATTTAAATAAGTGTT-TAAAGTATTACCGTGTG---TTATTT--TGT--AATA--TTACAAAAAAANATT-CTCGCGA-TTATATACGTGCATATGTATCATATATAAATTTTCATTGGCGTAGGAGCCTTTTAATTACTTGGGAAGCAAACCTGGCGAGAGAGTGTAGGAGAAAGAATCCCCTCCCAT------AGTTGAGGGTACGGGGGCCT-CCATCGGATCAT---TTTGAT--ATCTTAAAT-CCAAA-GCTGTTGCGTTC-AATGGAGTTGTTAGGATAAAGATATGATTATTATTTACTCCAATA--GTNTGTGA-TTT------AAACG--CTTTTATNAAGAAAAAAGTCTGAA-ATNTATT-AAAAAACTTACTTCGACCGGGTTTTAAACCCGTCACCTTATGCACTGGGAGCGAGNCGTGAGAG---GAGATCTGGGGGGTGTTATTTATTGGGCTTCTCC-CCCTG-CA-AAAAA--GATATTTAAAAAA-CAAAAACGC---ATTCTAGTAGATTTTAATTGGAAAATGGTTGTTATTTATACCAGTTTG---TGGGGTCTCTGCTGGTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCGA-GAGAGTTTCCCTTNCTGNNGGAG-GTAAGAGGGACC-TCCCCTGGAAAATCTTGATATCTTAAAAGTCAAATGATGCATTATAGCAAGTTTTAT-AGTGTATT--AGGGGAAAGCTGGTTGTTATTTACTCCAACATTTTCACGGTGACATTTAAACGTTTTTATTAAGAAAGAAAAACTGTAAGATGTATTAAACNGGAACTTTCACTGTTTCACTGGGTTGT-AAACCCAATTCACTGCAAACTAATTAAGAGGAAGAAGGTGGGAAGCGGGTTTGTGTCGATGCTGCGGCCTCCCCCGGAAAGTAACATTGATATAAT-G-TTAAAACAACAAATGCTGCA-TTCTAGTTAGCTTTTAGGATAAAAATATGGTTGTCATTTACTCAAGAT-ATTTTTTGTATTTTGTGACTTTTAAACATATTTTATCAAATTTTT-------TTTGGAGTG-----AGGGGTG---GGCAGAGTAT--------ATGCTGCCCCTCC--ACCTTAATATTGGGT---------G--GGGGAGGAACATACGCCTTTGTTTTTACGCCACTTTCTGAAGCTTCGCCAGTTCGAATTGCAGCCGGCAGACACTACATCCAAAAAGGCG--TAGTGACGCACTGTGCATATACATAAATTGACAAAACCTTAAATTTTGTGCGAAAAGTATTTATACCCGACA--GAAAATTACCAAGTTATAAATTCAAAATATAAAAA-ATCT-AAAAAAAA-------TCAATAACTATAATCGCAATATTTATATCGTCTTAATTTACCANTTTGAATAATTGGCATTATGTGCCAGCGTGTTTTATAAATCTTTAACTTTCTAATACGATGTAGATTATATTAAAAAGTTAATAGATAACACATTGAAAACGACATAT------------TTATCTATCTTAAATATAAGGGGGGTCAATATACGTT----TCCGTAATTA
gi|1 : ATATTGACCATTTGATCGATTATTATAAACAAGTGATAAATATATTAAACGTTGTTTACTCAATTTAAATAAGTGTT-TAAAGTATTACCGTGTG---TTATTT--TGT--AATA--TTACAAAAAAAAATT-CTCGCAA-TTATATACATGCATATGTATCATATATAAATTTTCATTGGCGTAGGAGCCTTTTAATTACTTGGGAAGCAAACCTGGCGAGAGAGTGTAGGAGAAAGAATCCCCTCCCAT------AGTTGAGGATACGGGGGCCT-CCATCGGATCAT---TTTGAT--ATCTTAATT-CCAA--GCTGTTGCATTC-AATGGAGTTGTTAAGATAAAGATATGATTGTCATA-ACTCCAATA--TTTTGTGA-TTT------AAATA---TTTTATAAAGAAAAAAGTCTGAA-ATGTATT-AAAAAACTTACTTCGACCGGGTTTTAAACCCGTCACCTTATGCACTGGGAGCAAGCCGTGAGAG---GAGATCTGGGGGGTGTTATTTATTGGACTTCTCC-CCCTG-CA-AAAAA--GGTATTTAAAAAA-CAAAAATGC---AATCAAGAAGATTTTAATTGGAAAATGGTTGTT-TTTATACCAGTTTG---TGGGGTCTCTGCTGGTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCGA-GAGAGTTTCCCTTTCTGTAGGAG-GTAAGAGGGACC-TCCCCTGGAAAATCTTGATATCTTAAAAGTCAAATGATACATTATAGCAAGTTTTAT-AGTGTATT--AGGGGAAAGTTGGTGGTTACTT-------------CACGGTGACATTTAAACGTTTTTATTAAGAAAGAAAAACTGTAAGATGTATTAAACCGGAACTTTCACTATTTCACTGGGTTGT-AAATTCAATTCACTGCAAACTAATTAAGAGGAAGAAGGTGGGAAGCGGGGTTGTGTCGATGCTGCGGCCTCCCCCGGAAAGTAACATTGATATAAT-GGTTAAAACAACAAATGCTGCA-CTCTAGTTGGCTTTTAAGATAAAAATATGGTTGTCATTTACTCAAGAT-ATTTTTTGTATTTTGTGTCTTTTAAACATATTTTATCAAATTTTT-------TTTGGAGTG-----AGGGGTG---GGCAGAGTAT--------ATGCTGCCCCTCC--ACCTTAATATTGGGT---------G--GGGGAGGAACATACGCCTTTGTTTTTACGCCACTTTCTGAAGCTTCGCCAGTTCAAATTGCAGCCAACAGACACTACATCCAAAAAGGCG--TAGTGACGCACTGTGCATATATATAAATTGACAAAACCTTAAATTTTGTGTGAAAAGTATTTATACCCAACA--GAAAATTACTAAGTTATAAATTCAAAATATAAAAA-ATCT-AAAAAAAA-------TCAATAACTATAATCGCAATATTTATATCGTCTTAATTTACCATTTTGAATTATTGGCATTATGTGCCAGCATGTTTCATAAATCTTTAGCTTTCTAATACGATGTAGATTATATTAAAACGGTAATAGATAACACATTGAAAACAACATAT------------TAATCTATTTTAAATATAAGGGGCGTCAATATACGTT----TCCGTAATTA
gi|10 : AAGAGAAATAGTGTGGTTAGCGGGTTTGTTGCGGTGCTGGGACCTTCCCCGAAAA--AA---------AA----TTAAAATATCAAATGTT-CATTTCTAGTTAGGTTTTAGGATAAAAATACGGTTGTCA-TTACTCCAGAT-G--TTTGGTATTTTGTGACACTTAGACAT-TTTTATCAATCCTTTACTCATATTTGGAATGATGTTAGGGGTGGCTGGAAAAGAAT--------ATGCTGCCACTCCCGACCTTAATATTGGGA---------G--AGGG
gi|11 : ATCTCGTCCCGTTGGTAGAGATGAGGG-ATGGAGGCTT-CT-CCGGAATAT------GAA--ATCTTAAAAACCAAATGCTGTTGTGT---AGCGAGTTTTTTAGGATAAAAATAAGATTTTTGGTTATTTCACTA--TTTTTT---TTTACTTTGAAACGATTTTTTTTAAAGAAAAAAA---AAAGATTTATT-A
gi|12 : ggggtggggtttGGAGGGGTAACCCCCTCCTAT------TGGTGAGGGTACGGAGGACGACCCTCGAAACGTAAACATAATCAACATTAAAT-C---A------TGCGTTTTAGTGG-GTTTATAGGCTGAAAATATGAACGTTATTTACTCCAATAGCGTACGTCC-TTC------AAACG--TTTTTATTAAAGAAA
gi|13 : gGAGAGTAAAAGA------CCCTCAGAAATTTCTAACATCATCAGTATCAAATCATGCATTCTAACGAGTTTT-T-GCGGGATT--GGGGTA----TGATTATTATTTACTCCA----TCTCAC--T----TTTAAATGCTTTTATTAAtacattcataa
gi|14 : gtaggggtagcccctcgtgttagtagggatacaGGGATCATCCGGTGGAAA---TGGATATCTTAAAAA-CAAA--ATGC--TGTCGCA-----TATTAGTAAATTTAAGGGGAAA-CTGATTGTTATTTATTCCAATATTTT----GTGACTTTTAAACGTTTTCATTAAGAa
gi|16 : tatggaggcgtggggagttgGGTATGCATATTATTTACTCCAATA--GTATGTGA-CTTTA----AAACG--CTTTTATTAAGAAA
gi|17 : gggagatgAAAAGCGAATTTCAACCAGGTTTTAAACCCGTTACTTTTCGCACTGGGAGAGGGA--TGAGAGTGTGAGA------GGGTGTcacctacacaag
gi|18 : ttGGTATGCATATTATTTACTCCAATA--GTATGTGA-CTTTA----AAACG--CTTTTATTAAGAAA
gi|19 : ggagatgCCCCGGAA-GT--TATTGATAT------CTAAAACACTTAATGCTTCA-TTGTAGTCAGTATTTAGGATAAAca
gi|2 : ATATTGACCATTTGATCGATTATTATAAACAAGTGATAAATATATTAAACGTTGTTTACTCAATTTAAATAAGTGTT-TAAAGTATTACCGTGTG---TTATTT--TGT--AATA--TTACAAAAAAAAATT-CTCGCAA-TTATATACATGCATATGTATCATATATAAATTTTCATTGGCGTAGGAGCCTTTTAATTACTTGGGAAGCAAACCTGGCGAGAGAGTGTAGGAGAAAGAATCCCCTCCCAT------AGTTGAGGATACGGGGGCCT-CCATCGGATCAT---TTTGAT--ATCTTAATT-CCAA--GCTGTTGCATTC-AATGGAGTTGTTAAGATAAAGATATGATTGTCATA-ACTCCAATA--TTTTGTGA-TTT------AAATA---TTTTATAAAGAAAAAAGTCTGAA-ATGTATT-AAAAAACTTACTTCGACCGGGTTTTAAACCCGTCACCTTATGCACTGGGAGCAAGCCGTGAGAG---GAGATCTGGGGGGTGTTATTTATTGGACTTCTCC-CCCTG-CA-AAAAA--GGTATTTAAAAAA-CAAAAATGC---AATCAAGAAGATTTTAATTGGAAAATGGTTGTT-TTTATACCAGTTTG---TGGGGTCTCTGCTGGTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCGA-GAGAGTTTCCCTTTCTGTAGGAG-GTAAGAGGGACC-TCCCCTGGAAAATCTTGATATCTTAAAAGTCAAATGATACATTATAGCAAGTTTTAT-AGTGTATT--AGGGGAAAGTTGGTGGTTACTT-------------CACGGTGACATTTAAACGTTTTTATTAAGAAAGAAAAACTGTAAGATGTATTAAACCGGAACTTTCACTATTTCACTGGGTTGT-AAATTCAATTCACTGCAAACTAATTAAGAGGAAGAAGGTGGGAAGCGGGGTTGTGTCGATGCTGCGGCCTCCCCCGGAAAGTAACATTGATATAAT-GGTTAAAACAACAAATGCTGCA-CTCTAGTTGGCTTTTAAGATAAAAATATGGTTGTCATTTACTCAAGAT-ATTTTTTGTATTTTGTGTCTTTTAAACATATTTTATCAAATTTTT-------TTTGGAGTG-----AGGGGTG---GGCAGAGTAT--------ATGCTGCCCCTCC--ACCTTAATATTGGGT---------G--GGGGAGGAACATACGCCTTTGTTTTTACGCCACTTTCTGAAGCTTCGCCAGTTCAAATTGCAGCCGGCAGACACTACATCCAAAAAGGCG--TAGTGACGCACTGTGCATATATATAAATTGACAAAACCTTAAATTTTGTGTGAAAAGTATTTATACCCAACA--TAAAGTTACTAAGTTATAAATTCAAAATATAAAAA-ATAT-AAAAAAAA-------TCAATAACTATAATCGCAATATTTATATCGTCTTAATTTACCATTTTGAATAATTGGCATTATGTGCCAGCATGTTTTATAAATCTTTAACTTTCTAATACGATGTAGATTATATT------------------------AAAACGGCATAT------------TAATCTATCTTAAATATAAGGGGGGTCAATATACGTT----TCCGTTAT
gi|20 : tTATGCTTATTATTTACTCCAATA--GTTTGTGACTTT------AAACG--CTTTTATTAA
gi|21 : ggggtgGGGTAGGGGTATGATTATTATTTACTCCAATA--TTTTTTAC-TTTA-----AAACG--CTTTTA
gi|22 : TAGGATTATCATTTACTCCAACA--GTATTTGA-CTTTA----AAACT--CTTTTA
gi|3 : gggagGGAGGGTGTTATATATTGGGCTTCTCC-TC-TG-CATAAAAA--GATATTTAAAAAA-CATACATGC---ATTCTAGTAGATTTTAATCGGAAAATGGTTGTTATTAATACCAGTTTG---TGGGGTCTCGGCTGGTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGA-GAGAGTTTCCCTTGCTGGTGGGG-GTAAGAGGGACC-TCCCCTGGAAAATCTTGATATCTTAAAAGCCAAATAATGCCTTATAGCAAGTTTTAT-AGTGTTTT--AGGGGAAAGCTGGTTGTTATTTACTCCAACATTTTCACGCTGACATTTAGACGTTTTTATTAAGAAAGAAAAACTGTATGATGTATTAAACAGGAACTTTCACTGTTCCACTGGGTTGT-AAACCCAATTCACTGCAAACTAATTAAGAGGAAAAAGGTGGTAAGCGGGTTTGTGTCGATGCTGCGGCCTCCCCCGGAAAGTAACATTGATATGATAG-TTAAAACAACAAATGCTGCA-TTCTAGTTAGCTTTTAAGATAAAAATATGGTTGTCATTTACT---GATGATTTTTTGTATTTAGTGACTTTAAAACATATTTTATCAA--TTGT-------TTTGGAGTG-----GAGAGTG---GGCAGAGTAT--------ATGCTGCCCCTCC--ACCTTAATATTGGGT---------GGAGGGGAAGAACATACGCCTTTGTTTTTACGCCACTTTCTGAGGCTTCGCCAGTTCGAATTGCAGCCGGCAGACACTTCATCCAAAAAGGCG--TAGTGACGCACTGTGCATATACATAAATTGACAAAACCTTAAATTTTGTGTGAAAAGTATTTATACCAAACA--GAAAATTACCAAGTTATAAATTCAAAATATAAAAA-ATCTAAAAAAAAA-------TCAATAACTATTATCGCAATATTTATATCGTCTTAATTTACCACTTTGAATAATTGGCATTATGTGTAAGCATGGTTTATAATTCTTTAACTTTCTAATACGATGTAGATTATATTTAAAAGTAAATTGATAACACATCGAAAA
gi|4 : tttaaatattttatgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntatgAA--GATATTTAAAAAG-CAAAAAAGC---ATTTTAGTAGATTTTAATTGGAAAATGGTTGTTATTTATACCAGTTTA---TGGGGTCCCTGCTGGTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGAAGAGAGTTTCCCTTGCAGGTGGGG-GTAAGAGTGACC-TCCCCTGGAAAATCTTGATACGTTAAAAGCCAAAAAATGCATTATAGCAAGTTTTAT-AGTGTATA--AGGGGAAAGCTGGTTGTTATTTACTCTAACATTTTCACGGTGACATTTAAACGTTTATATTAAGAAAGAAAAACTGTAAGATGTATTAAACAGGAACATTCACTGTTTCACTGGGTTGTAAAACCCAATTCACTGCAAACTTATTAAGAAGAAGAAGGTGGGAAGCGGGTTTGTGTCGATGCAGCGGCCTCCCCCGGAAAGTAACATTGATATAATAG-TTAAAACAACAAATGCTGCA-TTCTAGTTAGCTTTTAAGATAAACACATGGTTGTCCTTTACTCAAATT-TTTTTTTGTATTTTGTGACTTTTAAACATATTTTATCAA--TTTA-------TTTGGAGT------AGGGGTG---GGCAGAGTATATGGCATAATGCTGCCCCTCC--ACCTTAATATTTGGTGGGGGGAGGG--GGGGAGGAACATATGCCTTTGTTTTAACGCCACTTTTTGACGCTTCGCCAGTTTGAATTGCAGCCGGCAGACACTACATCCAAAAAGGCG--TAGTGACGCACTGTGCATATACATAAATTGACAAAACCTTAAATTGTGTGTGAAAAGTATTTATACCCAACA--GAAAAGTACCAAGTTATAAATTCAAAATAT-------------AAAAAA-------TCAATTACTATAATCACAATATTTATATCGTCTTAATTTACCATTTTGAATAATTGGCATTATGTGCCAGCATGTTTTATAAATCTTTAACCTTCTAATACGATGTCGATTATATTAAAAAGTTAATAGATAACACATTGAAAACAACATAT------------TTATCTATCTTAAATATAAGGGAGGTCAGTATACATT----TCCGTA
gi|5 : AAGACATGATATTTT---CTAAAAGTATTTATATCCGACA--GAAAATTGCCTAGTTATAAATTCAAAATATAAGAA-AGCT--------ATTTTTTTTCAAAAACTATAATCGCAATATTT-TCTGGTCTTAATTTACCAATT-----------CATTATGTGCCACCATG-TTGATAAAGCT---ACGATAT-ATA-GATCAAGATTATATTAAAAAGTTAATAGATAACGCATTGAAAACGACATAT------------TTATTTATTTTAAATATAAGGGGGGTCAATATACGTTTTCATCCGTAGCTAt
gi|6 : tagtaacaactgtcttaaatgtagattacttcaagtataATCTTCACCATTTGATCGATTATTATAAACGAGTGATAAATATGTTAAACGTAGTTTACTCAATTT--ATAATTTTTATACAAT-TTAACATTTGATTTTAATTCATGTTAAATGGCTTGTAAATAAGTGTT-ACCGTGAGTTATATAcatgtttttccaaaaccgtatattatttagtcttatttgtggggtatataaccttgatttactgatgtagatgtacatttatgtacac
gi|6 : AAGTGTTACCGTGAG---TTATAT--AGT--AATA--CTACAAAAAAACATTTCTCGCGA-TTATTTACGTGTAAATGTATCATATATAAATTTTTATTGGCGTAGGAGCGTTTTAATTACTTAGGAGACCAACTTGGCGAAAGAGTGTAGGAGAAAGA----------AT------AATTGAGGCTACGGGGGCCT-CCATCGGATTAC---TTTGAT--ATCTT-AAT-CCCCA-GCTGTTGCATTC-AATGGAGTTGTTAAGATAAAGATAgtaatactacaaaaaaacatttctcgcgattatttacgtgtaaatgtatcatatataaatttttattggcgtaggagcgttttaattacttaggagaccaacttggcgaaagagtgtaggagaaagaataattgaggctacgggggcctccatcggattactttgatatcttaatccccagctgttgcattcaatggagttgttaagataaagata
gi|7 : atcttcaccatttgatcgattattataaacgagtgataaatatgttaaacgtagtttactcaatttataatttttatacaatttaacatttgattttaattcatgttaaatggcttgtaaatTTTTATAAA-AAGAAAGTATAAA-ATTTATTTAAAAAAGT-----CGACCGGGTTTAAAACCC-------T-TGGA--GGGAGTGATACATG---------GTTTTGCGG--------TTATTGGGGT---CCACCCTGGCA-ATAAGTTGATATTAAAAAAAACAACAACACGGAATTCTAGTAGAATTTAATTGTAAAATGGTTTTTATTTATACCAGTGTGGGAGGGGGTCT
gi|7 : ataGTGGGAGG-GGGTCTAT-T--ATGC------CTACCCCGGAA--TAAGA---ATA-AAT---CTAAAACACCAAATGCTGCA-TTCTATAAAGTTTTCAGCAAAAAGGTATGGTTGAAATTTACTCTAGAattatgcctaccccggaataagaataaatctaaaacaccaaatgctgcattctataaagttttcagcaaaaaggtatggttgaaatttactctagagtgggagagggtg
gi|8 : atattttataaaaagaaagtataaaatttatttaaaaaagtcgaccgggtttaaaacccttggagggagtgatacatggttttgcggttattggggtccaccctggcaataagttgatattaaaaaaaacaacaacacggaattctagtagaatttaattgtaaaatggtttttatttataccagtATCCAAAAAGGCGCGTAGTGGCGTACTATGCATGTACATAAATTGATAAAACCTTACATTTTGTTCGAAAAGTATTTATATCCGACACTG----TTTCCAAGTTATAAATTCAAAACATAAAAATACTT-GGAAAAAA-------TCAATAACTATGATCGC------TATATCGTCCTAATTCAACAATTTGAATAATTGGCATTATGTGCCATCGTGTTTTATAAAGCTTCAACTTTCTAATACGATGCAGATTCTATTAAGAAGTTAATAAGTAACACATTGAAAACAACATAT------------TTA--TATCTTAGATATAAGGGgtgggagagggtg
gi|9 : TAAATTGACGAAACGTTAAGTTGTGTGCGAAAAGTATTTATATCCATCA--AAAAATT-----GTTATAAATTTAGAATATAACTTTATTT----------------TCAA-GACTATAATCGAAATATTTATATCGCCGTGTTTTACAAATTTGAATA-----TATTATATGCCCACGTGTGT-ATAAAACATTAACGTTCTAAAACGATATAATTTCTATTAAAATATTAATCGATAACATATTTAAAATGACATATTTATTAATATATTTATCTATTTTAAATATAA-ATGGATCAATATATGTT----TTCGTAATTa
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|15 ): GGAGGGTTAATCGTTTCTGTTGGTGAGGGACATAGAGAACGATCATTGGAAATCTTTAACTTTATCAACGTTAAATCGTGCATTCTTGTAAGGTTTTAGGG
Alignments
lowQualScore : 111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 1 111 11 11 11 1 1 222222 11111 11 1111 333333 111 1 1 111 1 1 1 11 111 1 111 000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 1 222222222222 1 2222 11 2222222 22222 111 22222222 11 333333333333 11 222222222222222222222 333333333333 1111
lowQualScore : 0 7 3 7 777 33 33 33 1 0 0 0 0 333333 1 22 8 5 1 88888 11 0 1 8 9999 0 8 3 1 777 1 0 4 555555 000 1 55 0 1 0 9 0 2 0 0 9 2 0 333 3 777 33 3 0 2 0 0 11 8 4 444 1 1 1 0 444 222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222 0 1 22 8 6 3 4 77 3 6 99 2 444444444444 2 1 0 2 3 55 3 1 11 8888 1 0 5 3 8 0 1 0 99 6666666 00000 444 99999999 11 333333333333 0 11 1 77 3 444444444444444444444 1 1 1 1 1 3 1 1 1 1 444444444444 7777
lowQualScore : . . . . ... .. .. .. . . . . . ...... . .. . . . ..... .. . . . .... . . . . ... . . . ...... ... . .. . . . . . . . . . . . ... . ... .. . . . . . .. . . ... . . . . ... ...................................................................................................... . . .. . . . . .. . . .. . ............ . . . . . .. . . .. .... . . . . . . . . .. ....... ..... ... ........ .. ............ . .. . .. . ..................... . . . . . . . . . . ............ ....
lowQualScore : 7 3 3 0 555 88 88 88 0 0 0 7 8 000000 0 22 0 6 4 88888 00 8 4 0 8888 8 0 8 9 222 0 1 4 666666 888 0 88 0 0 0 8 2 5 2 2 8 5 2 888 2 555 55 2 0 5 0 0 00 0 6 000 4 4 4 6 000 000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 0 0 00 0 7 5 2 22 2 7 22 5 555555555555 5 0 0 5 5 77 0 4 66 6666 6 7 7 3 0 8 4 8 44 0000000 00000 000 00000000 00 000000000000 8 00 4 99 9 000000000000000000000 7 0 4 4 4 6 6 7 6 6 222222222222 0000
consensus : ATATTGACCATTTGATCGATTATTATAAACGAGTGATAAATATATTAAACGTTGTTTACTCAATTTAAATAAGTGTT-TAAAGTATTACCGTGTG---TTATTT--TGT--AATA--TTACAAAAAAANATT-CTCGCGA-TTATATACGTGCATATGTATCATATATAAATTTTCATTGGCGTAGGAGCCTTTTAATTACTTGGGAAGCAAACCTGGCGAGAGAGTGTAGGAGAAAGAATCCCCTCCCAT------AGTTGAGGGTACGGGGGCCT-CCATCGGATCAT---TTTGAT--ATCTTAAAT-CCAAA-GCTGTTGCGTTC-AATGGAGTTGTTAGGATAAAGATATGATTATTATTTACTCCAATA--GTNTGTGA-TTT------AAACG--CTTTTATNAAGAAAAAAGTCTGAA-ATNTATT-AAAAAACTTACTTCGACCGGGTTTTAAACCCGTCACCTTATGCACTGGGAGCGAGNCGTGAGAG---GAGATCTGGGGGGTGTTATTTATTGGGCTTCTCC-CCCTG-CA-AAAAA--GATATTTAAAAAA-CAAAAACGC---ATTCTAGTAGATTTTAATTGGAAAATGGTTGTTATTTATACCAGTTTG---TGGGGTCTCTGCTGGTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCGA-GAGAGTTTCCCTTNCTGNNGGAG-GTAAGAGGGACC-TCCCCTGGAAAATCTTGATATCTTAAAAGTCAAATGATGCATTATAGCAAGTTTTAT-AGTGTATT--AGGGGAAAGCTGGTTGTTATTTACTCCAACATTTTCACGGTGACATTTAAACGTTTTTATTAAGAAAGAAAAACTGTAAGATGTATTAAACNGGAACTTTCACTGTTTCACTGGGTTGT-AAACCCAATTCACTGCAAACTAATTAAGAGGAAGAAGGTGGGAAGCGGGTTTGTGTCGATGCTGCGGCCTCCCCCGGAAAGTAACATTGATATAAT-G-TTAAAACAACAAATGCTGCA-TTCTAGTTAGCTTTTAGGATAAAAATATGGTTGTCATTTACTCAAGAT-ATTTTTTGTATTTTGTGACTTTTAAACATATTTTATCAAATTTTT-------TTTGGAGTG-----AGGGGTG---GGCAGAGTAT--------ATGCTGCCCCTCC--ACCTTAATATTGGGT---------G--GGGGAGGAACATACGCCTTTGTTTTTACGCCACTTTCTGAAGCTTCGCCAGTTCGAATTGCAGCCGGCAGACACTACATCCAAAAAGGCG--TAGTGACGCACTGTGCATATACATAAATTGACAAAACCTTAAATTTTGTGCGAAAAGTATTTATACCCGACA--GAAAATTACCAAGTTATAAATTCAAAATATAAAAA-ATCT-AAAAAAAA-------TCAATAACTATAATCGCAATATTTATATCGTCTTAATTTACCANTTTGAATAATTGGCATTATGTGCCAGCGTGTTTTATAAATCTTTAACTTTCTAATACGATGTAGATTATATTAAAAAGTTAATAGATAACACATTGAAAACGACATAT------------TTATCTATCTTAAATATAAGGGGGGTCAATATACGTT----TCCGTAATTA
Reference ( family-1845 ) : ATATTGACCATTTGATCGATTATTATAAACGAGTGATAAATATATTAAACGTTGTTTACTCAATTTAAATAAGTGTT-TAAAGTATTACCGTGTG---TTATTT--TGT--AATA--TTACAAAAAAANATT-CTCGCGA-TTATATACGTGCATATGTATCATATATAAATTTTCATTGGCGTAGGAGCCTTTTAATTACTTGGGAAGCAAACCTGGCGAGAGAGTGTAGGAGAAAGAATCCCCTCCCAT------AGTTGAGGGTACGGGGGCCT-CCATCGGATCAT---TTTGAT--ATCTTAAAT-CCAAA-GCTGTTGCGTTC-AATGGAGTTGTTAGGATAAAGATATGATTATTATTTACTCCAATA--GTNTGTGA-TTT------AAACG--CTTTTATNAAGAAAAAAGTCTGAA-ATNTATT-AAAAAACTTACTTCGACCGGGTTTTAAACCCGTCACCTTATGCACTGGGAGCGAGNCGTGAGAG---GAGATCTGGGGGGTGTTATTTATTGGGCTTCTCC-CCCTG-CA-AAAAA--GATATTTAAAAAA-CAAAAACGC---ATTCTAGTAGATTTTAATTGGAAAATGGTTGTTATTTATACCAGTTTG---TGGGGTCTCTGCTGGTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCGA-GAGAGTTTCCCTTNCTGNNGGAG-GTAAGAGGGACC-TCCCCTGGAAAATCTTGATATCTTAAAAGTCAAATGATGCATTATAGCAAGTTTTAT-AGTGTATT--AGGGGAAAGCTGGTTGTTATTTACTCCAACATTTTCACGGTGACATTTAAACGTTTTTATTAAGAAAGAAAAACTGTAAGATGTATTAAACNGGAACTTTCACTGTTTCACTGGGTTGT-AAACCCAATTCACTGCAAACTAATTAAGAGGAAGAAGGTGGGAAGCGGGTTTGTGTCGATGCTGCGGCCTCCCCCGGAAAGTAACATTGATATAAT-G-TTAAAACAACAAATGCTGCA-TTCTAGTTAGCTTTTAGGATAAAAATATGGTTGTCATTTACTCAAGAT-ATTTTTTGTATTTTGTGACTTTTAAACATATTTTATCAAATTTTT-------TTTGGAGTG-----AGGGGTG---GGCAGAGTAT--------ATGCTGCCCCTCC--ACCTTAATATTGGGT---------G--GGGGAGGAACATACGCCTTTGTTTTTACGCCACTTTCTGAAGCTTCGCCAGTTCGAATTGCAGCCGGCAGACACTACATCCAAAAAGGCG--TAGTGACGCACTGTGCATATACATAAATTGACAAAACCTTAAATTTTGTGCGAAAAGTATTTATACCCGACA--GAAAATTACCAAGTTATAAATTCAAAATATAAAAA-ATCT-AAAAAAAA-------TCAATAACTATAATCGCAATATTTATATCGTCTTAATTTACCANTTTGAATAATTGGCATTATGTGCCAGCGTGTTTTATAAATCTTTAACTTTCTAATACGATGTAGATTATATTAAAAAGTTAATAGATAACACATTGAAAACGACATAT------------TTATCTATCTTAAATATAAGGGGGGTCAATATACGTT----TCCGTAATTA
gi|1 : ATATTGACCATTTGATCGATTATTATAAACAAGTGATAAATATATTAAACGTTGTTTACTCAATTTAAATAAGTGTT-TAAAGTATTACCGTGTG---TTATTT--TGT--AATA--TTACAAAAAAAAATT-CTCGCAA-TTATATACATGCATATGTATCATATATAAATTTTCATTGGCGTAGGAGCCTTTTAATTACTTGGGAAGCAAACCTGGCGAGAGAGTGTAGGAGAAAGAATCCCCTCCCAT------AGTTGAGGATACGGGGGCCT-CCATCGGATCAT---TTTGAT--ATCTTAATT-CCAA--GCTGTTGCATTC-AATGGAGTTGTTAAGATAAAGATATGATTGTCATA-ACTCCAATA--TTTTGTGA-TTT------AAATA---TTTTATAAAGAAAAAAGTCTGAA-ATGTATT-AAAAAACTTACTTCGACCGGGTTTTAAACCCGTCACCTTATGCACTGGGAGCAAGCCGTGAGAG---GAGATCTGGGGGGTGTTATTTATTGGACTTCTCC-CCCTG-CA-AAAAA--GGTATTTAAAAAA-CAAAAATGC---AATCAAGAAGATTTTAATTGGAAAATGGTTGTT-TTTATACCAGTTTG---TGGGGTCTCTGCTGGTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCGA-GAGAGTTTCCCTTTCTGTAGGAG-GTAAGAGGGACC-TCCCCTGGAAAATCTTGATATCTTAAAAGTCAAATGATACATTATAGCAAGTTTTAT-AGTGTATT--AGGGGAAAGTTGGTGGTTACTT-------------CACGGTGACATTTAAACGTTTTTATTAAGAAAGAAAAACTGTAAGATGTATTAAACCGGAACTTTCACTATTTCACTGGGTTGT-AAATTCAATTCACTGCAAACTAATTAAGAGGAAGAAGGTGGGAAGCGGGGTTGTGTCGATGCTGCGGCCTCCCCCGGAAAGTAACATTGATATAAT-GGTTAAAACAACAAATGCTGCA-CTCTAGTTGGCTTTTAAGATAAAAATATGGTTGTCATTTACTCAAGAT-ATTTTTTGTATTTTGTGTCTTTTAAACATATTTTATCAAATTTTT-------TTTGGAGTG-----AGGGGTG---GGCAGAGTAT--------ATGCTGCCCCTCC--ACCTTAATATTGGGT---------G--GGGGAGGAACATACGCCTTTGTTTTTACGCCACTTTCTGAAGCTTCGCCAGTTCAAATTGCAGCCAACAGACACTACATCCAAAAAGGCG--TAGTGACGCACTGTGCATATATATAAATTGACAAAACCTTAAATTTTGTGTGAAAAGTATTTATACCCAACA--GAAAATTACTAAGTTATAAATTCAAAATATAAAAA-ATCT-AAAAAAAA-------TCAATAACTATAATCGCAATATTTATATCGTCTTAATTTACCATTTTGAATTATTGGCATTATGTGCCAGCATGTTTCATAAATCTTTAGCTTTCTAATACGATGTAGATTATATTAAAACGGTAATAGATAACACATTGAAAACAACATAT------------TAATCTATTTTAAATATAAGGGGCGTCAATATACGTT----TCCGTAATTA
gi|10 : AAGAGAAATAGTGTGGTTAGCGGGTTTGTTGCGGTGCTGGGACCTTCCCCGAAAA--AA---------AA----TTAAAATATCAAATGTT-CATTTCTAGTTAGGTTTTAGGATAAAAATACGGTTGTCA-TTACTCCAGAT-G--TTTGGTATTTTGTGACACTTAGACAT-TTTTATCAATCCTTTACTCATATTTGGAATGATGTTAGGGGTGGCTGGAAAAGAAT--------ATGCTGCCACTCCCGACCTTAATATTGGGA---------G--AGGG
gi|11 : ATCTCGTCCCGTTGGTAGAGATGAGGG-ATGGAGGCTT-CT-CCGGAATAT------GAA--ATCTTAAAAACCAAATGCTGTTGTGT---AGCGAGTTTTTTAGGATAAAAATAAGATTTTTGGTTATTTCACTA--TTTTTT---TTTACTTTGAAACGATTTTTTTTAAAGAAAAAAA---AAAGATTTATT-A
gi|12 : ggggtggggtttGGAGGGGTAACCCCCTCCTAT------TGGTGAGGGTACGGAGGACGACCCTCGAAACGTAAACATAATCAACATTAAAT-C---A------TGCGTTTTAGTGG-GTTTATAGGCTGAAAATATGAACGTTATTTACTCCAATAGCGTACGTCC-TTC------AAACG--TTTTTATTAAAGAAA
gi|13 : gGAGAGTAAAAGA------CCCTCAGAAATTTCTAACATCATCAGTATCAAATCATGCATTCTAACGAGTTTT-T-GCGGGATT--GGGGTA----TGATTATTATTTACTCCA----TCTCAC--T----TTTAAATGCTTTTATTAAtacattcataa
gi|14 : gtaggggtagcccctcgtgttagtagggatacaGGGATCATCCGGTGGAAA---TGGATATCTTAAAAA-CAAA--ATGC--TGTCGCA-----TATTAGTAAATTTAAGGGGAAA-CTGATTGTTATTTATTCCAATATTTT----GTGACTTTTAAACGTTTTCATTAAGAa
gi|16 : tatggaggcgtggggagttgGGTATGCATATTATTTACTCCAATA--GTATGTGA-CTTTA----AAACG--CTTTTATTAAGAAA
gi|17 : gggagatgAAAAGCGAATTTCAACCAGGTTTTAAACCCGTTACTTTTCGCACTGGGAGAGGGA--TGAGAGTGTGAGA------GGGTGTcacctacacaag
gi|18 : ttGGTATGCATATTATTTACTCCAATA--GTATGTGA-CTTTA----AAACG--CTTTTATTAAGAAA
gi|19 : ggagatgCCCCGGAA-GT--TATTGATAT------CTAAAACACTTAATGCTTCA-TTGTAGTCAGTATTTAGGATAAAca
gi|2 : ATATTGACCATTTGATCGATTATTATAAACAAGTGATAAATATATTAAACGTTGTTTACTCAATTTAAATAAGTGTT-TAAAGTATTACCGTGTG---TTATTT--TGT--AATA--TTACAAAAAAAAATT-CTCGCAA-TTATATACATGCATATGTATCATATATAAATTTTCATTGGCGTAGGAGCCTTTTAATTACTTGGGAAGCAAACCTGGCGAGAGAGTGTAGGAGAAAGAATCCCCTCCCAT------AGTTGAGGATACGGGGGCCT-CCATCGGATCAT---TTTGAT--ATCTTAATT-CCAA--GCTGTTGCATTC-AATGGAGTTGTTAAGATAAAGATATGATTGTCATA-ACTCCAATA--TTTTGTGA-TTT------AAATA---TTTTATAAAGAAAAAAGTCTGAA-ATGTATT-AAAAAACTTACTTCGACCGGGTTTTAAACCCGTCACCTTATGCACTGGGAGCAAGCCGTGAGAG---GAGATCTGGGGGGTGTTATTTATTGGACTTCTCC-CCCTG-CA-AAAAA--GGTATTTAAAAAA-CAAAAATGC---AATCAAGAAGATTTTAATTGGAAAATGGTTGTT-TTTATACCAGTTTG---TGGGGTCTCTGCTGGTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCGA-GAGAGTTTCCCTTTCTGTAGGAG-GTAAGAGGGACC-TCCCCTGGAAAATCTTGATATCTTAAAAGTCAAATGATACATTATAGCAAGTTTTAT-AGTGTATT--AGGGGAAAGTTGGTGGTTACTT-------------CACGGTGACATTTAAACGTTTTTATTAAGAAAGAAAAACTGTAAGATGTATTAAACCGGAACTTTCACTATTTCACTGGGTTGT-AAATTCAATTCACTGCAAACTAATTAAGAGGAAGAAGGTGGGAAGCGGGGTTGTGTCGATGCTGCGGCCTCCCCCGGAAAGTAACATTGATATAAT-GGTTAAAACAACAAATGCTGCA-CTCTAGTTGGCTTTTAAGATAAAAATATGGTTGTCATTTACTCAAGAT-ATTTTTTGTATTTTGTGTCTTTTAAACATATTTTATCAAATTTTT-------TTTGGAGTG-----AGGGGTG---GGCAGAGTAT--------ATGCTGCCCCTCC--ACCTTAATATTGGGT---------G--GGGGAGGAACATACGCCTTTGTTTTTACGCCACTTTCTGAAGCTTCGCCAGTTCAAATTGCAGCCGGCAGACACTACATCCAAAAAGGCG--TAGTGACGCACTGTGCATATATATAAATTGACAAAACCTTAAATTTTGTGTGAAAAGTATTTATACCCAACA--TAAAGTTACTAAGTTATAAATTCAAAATATAAAAA-ATAT-AAAAAAAA-------TCAATAACTATAATCGCAATATTTATATCGTCTTAATTTACCATTTTGAATAATTGGCATTATGTGCCAGCATGTTTTATAAATCTTTAACTTTCTAATACGATGTAGATTATATT------------------------AAAACGGCATAT------------TAATCTATCTTAAATATAAGGGGGGTCAATATACGTT----TCCGTTAT
gi|20 : tTATGCTTATTATTTACTCCAATA--GTTTGTGACTTT------AAACG--CTTTTATTAA
gi|21 : ggggtgGGGTAGGGGTATGATTATTATTTACTCCAATA--TTTTTTAC-TTTA-----AAACG--CTTTTA
gi|22 : TAGGATTATCATTTACTCCAACA--GTATTTGA-CTTTA----AAACT--CTTTTA
gi|3 : gggagGGAGGGTGTTATATATTGGGCTTCTCC-TC-TG-CATAAAAA--GATATTTAAAAAA-CATACATGC---ATTCTAGTAGATTTTAATCGGAAAATGGTTGTTATTAATACCAGTTTG---TGGGGTCTCGGCTGGTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGA-GAGAGTTTCCCTTGCTGGTGGGG-GTAAGAGGGACC-TCCCCTGGAAAATCTTGATATCTTAAAAGCCAAATAATGCCTTATAGCAAGTTTTAT-AGTGTTTT--AGGGGAAAGCTGGTTGTTATTTACTCCAACATTTTCACGCTGACATTTAGACGTTTTTATTAAGAAAGAAAAACTGTATGATGTATTAAACAGGAACTTTCACTGTTCCACTGGGTTGT-AAACCCAATTCACTGCAAACTAATTAAGAGGAAAAAGGTGGTAAGCGGGTTTGTGTCGATGCTGCGGCCTCCCCCGGAAAGTAACATTGATATGATAG-TTAAAACAACAAATGCTGCA-TTCTAGTTAGCTTTTAAGATAAAAATATGGTTGTCATTTACT---GATGATTTTTTGTATTTAGTGACTTTAAAACATATTTTATCAA--TTGT-------TTTGGAGTG-----GAGAGTG---GGCAGAGTAT--------ATGCTGCCCCTCC--ACCTTAATATTGGGT---------GGAGGGGAAGAACATACGCCTTTGTTTTTACGCCACTTTCTGAGGCTTCGCCAGTTCGAATTGCAGCCGGCAGACACTTCATCCAAAAAGGCG--TAGTGACGCACTGTGCATATACATAAATTGACAAAACCTTAAATTTTGTGTGAAAAGTATTTATACCAAACA--GAAAATTACCAAGTTATAAATTCAAAATATAAAAA-ATCTAAAAAAAAA-------TCAATAACTATTATCGCAATATTTATATCGTCTTAATTTACCACTTTGAATAATTGGCATTATGTGTAAGCATGGTTTATAATTCTTTAACTTTCTAATACGATGTAGATTATATTTAAAAGTAAATTGATAACACATCGAAAA
gi|4 : tttaaatattttatgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntatgAA--GATATTTAAAAAG-CAAAAAAGC---ATTTTAGTAGATTTTAATTGGAAAATGGTTGTTATTTATACCAGTTTA---TGGGGTCCCTGCTGGTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGAAGAGAGTTTCCCTTGCAGGTGGGG-GTAAGAGTGACC-TCCCCTGGAAAATCTTGATACGTTAAAAGCCAAAAAATGCATTATAGCAAGTTTTAT-AGTGTATA--AGGGGAAAGCTGGTTGTTATTTACTCTAACATTTTCACGGTGACATTTAAACGTTTATATTAAGAAAGAAAAACTGTAAGATGTATTAAACAGGAACATTCACTGTTTCACTGGGTTGTAAAACCCAATTCACTGCAAACTTATTAAGAAGAAGAAGGTGGGAAGCGGGTTTGTGTCGATGCAGCGGCCTCCCCCGGAAAGTAACATTGATATAATAG-TTAAAACAACAAATGCTGCA-TTCTAGTTAGCTTTTAAGATAAACACATGGTTGTCCTTTACTCAAATT-TTTTTTTGTATTTTGTGACTTTTAAACATATTTTATCAA--TTTA-------TTTGGAGT------AGGGGTG---GGCAGAGTATATGGCATAATGCTGCCCCTCC--ACCTTAATATTTGGTGGGGGGAGGG--GGGGAGGAACATATGCCTTTGTTTTAACGCCACTTTTTGACGCTTCGCCAGTTTGAATTGCAGCCGGCAGACACTACATCCAAAAAGGCG--TAGTGACGCACTGTGCATATACATAAATTGACAAAACCTTAAATTGTGTGTGAAAAGTATTTATACCCAACA--GAAAAGTACCAAGTTATAAATTCAAAATAT-------------AAAAAA-------TCAATTACTATAATCACAATATTTATATCGTCTTAATTTACCATTTTGAATAATTGGCATTATGTGCCAGCATGTTTTATAAATCTTTAACCTTCTAATACGATGTCGATTATATTAAAAAGTTAATAGATAACACATTGAAAACAACATAT------------TTATCTATCTTAAATATAAGGGAGGTCAGTATACATT----TCCGTA
gi|5 : AAGACATGATATTTT---CTAAAAGTATTTATATCCGACA--GAAAATTGCCTAGTTATAAATTCAAAATATAAGAA-AGCT--------ATTTTTTTTCAAAAACTATAATCGCAATATTT-TCTGGTCTTAATTTACCAATT-----------CATTATGTGCCACCATG-TTGATAAAGCT---ACGATAT-ATA-GATCAAGATTATATTAAAAAGTTAATAGATAACGCATTGAAAACGACATAT------------TTATTTATTTTAAATATAAGGGGGGTCAATATACGTTTTCATCCGTAGCTAt
gi|6 : tagtaacaactgtcttaaatgtagattacttcaagtataATCTTCACCATTTGATCGATTATTATAAACGAGTGATAAATATGTTAAACGTAGTTTACTCAATTT--ATAATTTTTATACAAT-TTAACATTTGATTTTAATTCATGTTAAATGGCTTGTAAATAAGTGTT-ACCGTGAGTTATATAcatgtttttccaaaaccgtatattatttagtcttatttgtggggtatataaccttgatttactgatgtagatgtacatttatgtacac
gi|6 : AAGTGTTACCGTGAG---TTATAT--AGT--AATA--CTACAAAAAAACATTTCTCGCGA-TTATTTACGTGTAAATGTATCATATATAAATTTTTATTGGCGTAGGAGCGTTTTAATTACTTAGGAGACCAACTTGGCGAAAGAGTGTAGGAGAAAGA----------AT------AATTGAGGCTACGGGGGCCT-CCATCGGATTAC---TTTGAT--ATCTT-AAT-CCCCA-GCTGTTGCATTC-AATGGAGTTGTTAAGATAAAGATAgtaatactacaaaaaaacatttctcgcgattatttacgtgtaaatgtatcatatataaatttttattggcgtaggagcgttttaattacttaggagaccaacttggcgaaagagtgtaggagaaagaataattgaggctacgggggcctccatcggattactttgatatcttaatccccagctgttgcattcaatggagttgttaagataaagata
gi|7 : atcttcaccatttgatcgattattataaacgagtgataaatatgttaaacgtagtttactcaatttataatttttatacaatttaacatttgattttaattcatgttaaatggcttgtaaatTTTTATAAA-AAGAAAGTATAAA-ATTTATTTAAAAAAGT-----CGACCGGGTTTAAAACCC-------T-TGGA--GGGAGTGATACATG---------GTTTTGCGG--------TTATTGGGGT---CCACCCTGGCA-ATAAGTTGATATTAAAAAAAACAACAACACGGAATTCTAGTAGAATTTAATTGTAAAATGGTTTTTATTTATACCAGTGTGGGAGGGGGTCT
gi|7 : ataGTGGGAGG-GGGTCTAT-T--ATGC------CTACCCCGGAA--TAAGA---ATA-AAT---CTAAAACACCAAATGCTGCA-TTCTATAAAGTTTTCAGCAAAAAGGTATGGTTGAAATTTACTCTAGAattatgcctaccccggaataagaataaatctaaaacaccaaatgctgcattctataaagttttcagcaaaaaggtatggttgaaatttactctagagtgggagagggtg
gi|8 : atattttataaaaagaaagtataaaatttatttaaaaaagtcgaccgggtttaaaacccttggagggagtgatacatggttttgcggttattggggtccaccctggcaataagttgatattaaaaaaaacaacaacacggaattctagtagaatttaattgtaaaatggtttttatttataccagtATCCAAAAAGGCGCGTAGTGGCGTACTATGCATGTACATAAATTGATAAAACCTTACATTTTGTTCGAAAAGTATTTATATCCGACACTG----TTTCCAAGTTATAAATTCAAAACATAAAAATACTT-GGAAAAAA-------TCAATAACTATGATCGC------TATATCGTCCTAATTCAACAATTTGAATAATTGGCATTATGTGCCATCGTGTTTTATAAAGCTTCAACTTTCTAATACGATGCAGATTCTATTAAGAAGTTAATAAGTAACACATTGAAAACAACATAT------------TTA--TATCTTAGATATAAGGGgtgggagagggtg
gi|9 : TAAATTGACGAAACGTTAAGTTGTGTGCGAAAAGTATTTATATCCATCA--AAAAATT-----GTTATAAATTTAGAATATAACTTTATTT----------------TCAA-GACTATAATCGAAATATTTATATCGCCGTGTTTTACAAATTTGAATA-----TATTATATGCCCACGTGTGT-ATAAAACATTAACGTTCTAAAACGATATAATTTCTATTAAAATATTAATCGATAACATATTTAAAATGACATATTTATTAATATATTTATCTATTTTAAATATAA-ATGGATCAATATATGTT----TTCGTAATTa
blockSeqs : A A A ATT CA TA GC A T G TGGTAG A GT A C A AAACA CA A A AAAT T G T GCG T C ACTTTG ATT A TC G T T A G T C CCG A TGT TC T A C G T TT A T GGA A A A A GGA NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN A T TA A A T T TC A T TA G ATTCCAATATTT G C A T T AG T T TA TGG T T C G A TC ACTCATA ATGTT GCT ATGGCATA CG GGGGGGAGGG CG A CT A ATCTAAAAAAAAA T T A A T T T T A T TTATTAATATAT TTCA
blockSeqs : . . G . . . . T . . . G AT . A A TT . A . CCA . A T T A . TA T T TA . G . T G A C ACA A . TT T . C . . . . T . T T T A . NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN . G GT . . A T TG A . . G ACTCCAACATTT G A . G T AG C T TG TAG C . A . T AT . . . . . GGA . A . A TACTTGGAAAAAA T C A A G T T A A A . .
blockSeqs : . . . . . C . . . T CT . A T TT . T . AA . A T G A . TA C T . . T . . . . . A . . . . . . . . . . A . T T T A . NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN . G GT . . A C TA C . . G ACTCTAACATTT G A . G T AG C T TA TAG A . A . A . . . . . . G . A . A ATATAAAAAAAA T T A A T T T A A A . .
blockSeqs : . T G . . T . . A . A . . T G A . TA C T . . C . T T T . . . . A C AA A . . . ACTCCATC . G A A C T A T A . T . A . . . . . . G . G . G AGCTATTTTTTT A A A A T G G A A A . .
blockSeqs : T T T . A C A . . . . . . . . . . . . G G . T . A . . G . T AAAAAA T A . G T T G A T C .
blockSeqs : T G T . . C T . . . A . C . A . . TATTT . A . G . . A . . .
blockSeqs : T T T . . C A
blockSeqs : . G A . . .
blockSeqCons : A*** TA**** C** ACTCCAACATTT TA ANCTAAAAAA***********
originalCons : ATATTGACCATTTGATCGATTATTATAAACGAGTGATAAATATATTAAACGTTGTTTACTCAATTTAAATAAGTGTT-TAAAGTATTACCGTGTG---TTATTT--TGT--AATA--TTACAAAAAAANATT-CTCGCGA-TTATATACGTGCATATGTATCATATATAAATTTTCATTGGCGTAGGAGCCTTTTAATTACTTGGGAAGCAAACCTGGCGAGAGAGTGTAGGAGAAAGAATCCCCTCCCAT------AGTTGAGGGTACGGGGGCCT-CCATCGGATCAT---TTTGAT--ATCTTAAAT-CCAAA-GCTGTTGCGTTC-AATGGAGTTGTTAGGATAAAGATATGATTATTATTTACTCCAATA--GTNTGTGA-TTT------AAACG--CTTTTATNAAGAAAAAAGTCTGAA-ATNTATT-AAAAAACTTACTTCGACCGGGTTTTAAACCCGTCACCTTATGCACTGGGAGCGAGNCGTGAGAG---GAGATCTGGGGGGTGTTATTTATTGGGCTTCTCC-CCCTG-CA-AAAAA--GATATTTAAAAAA-CAAAAACGC---ATTCTAGTAGATTTTAATTGGAAAATGGTTGTTATTTATACCAGTTTG---TGGGGTCTCTGCTGGTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCGA-GAGAGTTTCCCTTNCTGNNGGAG-GTAAGAGGGACC-TCCCCTGGAAAATCTTGATATCTTAAAAGTCAAATGATGCATTATAGCAAGTTTTAT-AGTGTATT--AGGGGAAAGCTGGTTGTTATTTACTCCAACATTTTCACGGTGACATTTAAACGTTTTTATTAAGAAAGAAAAACTGTAAGATGTATTAAACNGGAACTTTCACTGTTTCACTGGGTTGT-AAACCCAATTCACTGCAAACTAATTAAGAGGAAGAAGGTGGGAAGCGGGTTTGTGTCGATGCTGCGGCCTCCCCCGGAAAGTAACATTGATATAAT-G-TTAAAACAACAAATGCTGCA-TTCTAGTTAGCTTTTAGGATAAAAATATGGTTGTCATTTACTCAAGAT-ATTTTTTGTATTTTGTGACTTTTAAACATATTTTATCAAATTTTT-------TTTGGAGTG-----AGGGGTG---GGCAGAGTAT--------ATGCTGCCCCTCC--ACCTTAATATTGGGT---------G--GGGGAGGAACATACGCCTTTGTTTTTACGCCACTTTCTGAAGCTTCGCCAGTTCGAATTGCAGCCGGCAGACACTACATCCAAAAAGGCG--TAGTGACGCACTGTGCATATACATAAATTGACAAAACCTTAAATTTTGTGCGAAAAGTATTTATACCCGACA--GAAAATTACCAAGTTATAAATTCAAAATATAAAAA-ATCT-AAAAAAAA-------TCAATAACTATAATCGCAATATTTATATCGTCTTAATTTACCANTTTGAATAATTGGCATTATGTGCCAGCGTGTTTTATAAATCTTTAACTTTCTAATACGATGTAGATTATATTAAAAAGTTAATAGATAACACATTGAAAACGACATAT------------TTATCTATCTTAAATATAAGGGGGGTCAATATACGTT----TCCGTAATTA
finalCons : ATATTGACCATTTGATCGATTATTATAAACGAGTGATAAATATATTAAACGTTGTTTACTCAATTTAAATAAGTGTT-TAAAGTATTACCGTGTG---TTATTT--TGT--AATA--TTACAAAAAAANATT-CTCGCGA-TTATATACGTGCATATGTATCATATATAAATTTTCATTGGCGTAGGAGCCTTTTAATTACTTGGGAAGCAAACCTGGCGAGAGAGTGTAGGAGAAAGAATCCCCTCCCAT------AGTTGAGGGTACGGGGGCCT-CCATCGGATCAT---TTTGAT--ATCTTAAAT-CCA---GCTGTTGCGTTC-AATGGAGTTGTTAGGATAAAGATATGATTATTATTTACTCCAATA--GTNTGTGA-TTTTA----AAACGC--TTTTATNAAGAAAAAAGTCTGAA-ATNTATT-AAAAAACTTACTTCGACCGGGTTTTAAACCCGTCACCTTATGCACTGGGAGCGAGNCGTGAGAG---GAGATCTGGGGGGTGTTATTTATTGGGCTTCTCC-CCCTG-CA-AAAAA--GATATTTAAAAAA-CAAAAACGC---ATTCTAGTAGATTTTAATTGGAAAATGGTTGTTATTTATACCAGTTTG---TGGGGTCTCTGCTGGTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCGA-GAGAGTTTCCCTTNCTGNNGGAG-GTAAGAGGGACC-TCCCCTGGAAAATCTTGATATCTTAAAAGTCAAATGATGCATTATAGCAAGTTTTAT-AGTGTATT--AGGGGAAAGCTGGTTGTTATTTACTCCAACATTTTCACGGTGACATTTAAACGTTTTTATTAAGAAAGAAAAACTGTAAGATGTATTAAACNGGAACTTTCACTGTTTCACTGGGTTGT-AAACCCAATTCACTGCAAACTAATTAAGAGGAAGAAGGTGGGAAGCGGGTTTGTGTCGATGCTGCGGCCTCCCCCGGAAAGTAACATTGATATAAT-G-TTAAAACAACAAATGCTGCA-TTCTAGTTAGCTTTTAGGATAAAAATATGGTTGTCATTTACTCAAGAT-ATTTTTTGTATTTTGTGACTTTTAAACATATTTTATCAAATTTTT-------TTTGGAGTG-----AGGGGTG---GGCAGAGTAT--------ATGCTGCCCCTCC--ACCTTAATATTGGGT---------G--GGGGAGGAACATACGCCTTTGTTTTTACGCCACTTTCTGAAGCTTCGCCAGTTCGAATTGCAGCCGGCAGACACTACATCCAAAAAGGCG--TAGTGACGCACTGTGCATATACATAAATTGACAAAACCTTAAATTTTGTGCGAAAAGTATTTATACCCGACA--GAAAATTACCAAGTTATAAATTCAAAATATAAAAAANCTAAAAAA-----------TCAATAACTATAATCGCAATATTTATATCGTCTTAATTTACCANTTTGAATAATTGGCATTATGTGCCAGCGTGTTTTATAAATCTTTAACTTTCTAATACGATGTAGATTATATTAAAAAGTTAATAGATAACACATTGAAAACGACATAT------------TTATCTATCTTAAATATAAGGGGGGTCAATATACGTT----TCCGTAATTA
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|15 ): GGAGGGTTAATCGTTTCTGTTGGTGAGGGACATAGAGAACGATCATTGGAAATCTTTAACTTTATCAACGTTAAATCGTGCATTCTTGTAAGGTTTTAGGG
Alignments
lowQualScore : 111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 1 111 11 11 11 1 1 222222 11111 11 3333333333 111 111 1 1 111 1 1 1 11 111 1 111 000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 1 222222222222 1 2222 11 2222222 22222 111 22222222 11 333333333333 11 44444444444 333333333333 1111
lowQualScore : 0 7 3 7 777 33 33 33 1 0 0 0 0 333333 1 22 8 5 1 88888 11 2222222222 8 0 3 1 000 1 0 2 88 000 1 55 0 1 0 9 0 2 0 0 9 2 0 333 3 777 33 3 0 2 0 0 11 8 4 444 1 1 1 0 444 222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222 0 1 22 8 6 3 4 77 3 6 99 2 444444444444 2 1 0 2 3 55 3 1 11 8888 1 0 5 3 8 0 1 0 99 6666666 00000 444 99999999 11 333333333333 0 11 1 77 3 3 66 99999999999 1 1 1 1 7 1 1 1 1 444444444444 7777
lowQualScore : . . . . ... .. .. .. . . . . . ...... . .. . . . ..... .. .......... . . . . ... . . . .. ... . .. . . . . . . . . . . . ... . ... .. . . . . . .. . . ... . . . . ... ...................................................................................................... . . .. . . . . .. . . .. . ............ . . . . . .. . . .. .... . . . . . . . . .. ....... ..... ... ........ .. ............ . .. . .. . . .. ........... . . . . . . . . . ............ ....
lowQualScore : 7 3 3 0 555 88 88 88 0 0 0 7 8 000000 0 22 0 6 4 88888 00 4444444444 0 8 8 9 000 0 1 7 00 888 0 88 0 0 0 8 2 5 2 2 8 5 2 888 2 555 55 2 0 5 0 0 00 0 6 000 4 4 4 6 000 000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 0 0 00 0 7 5 2 22 2 7 22 5 555555555555 5 0 0 5 5 77 0 4 66 6666 6 7 7 3 0 8 4 8 44 0000000 00000 000 00000000 00 000000000000 8 00 4 99 9 6 66 00000000000 7 0 4 4 1 6 7 6 6 222222222222 0000
consensus : ATATTGACCATTTGATCGATTATTATAAACGAGTGATAAATATATTAAACGTTGTTTACTCAATTTAAATAAGTGTT-TAAAGTATTACCGTGTG---TTATTT--TGT--AATA--TTACAAAAAAANATT-CTCGCGA-TTATATACGTGCATATGTATCATATATAAATTTTCATTGGCGTAGGAGCCTTTTAATTACTTGGGAAGCAAACCTGGCGAGAGAGTGTAGGAGAAAGAATCCCCTCCCAT------AGTTGAGGGTACGGGGGCCT-CCATCGGATCAT---TTTGAT--ATCTTAA-NT-CCAA--GCTGTTGCG-TTCAATGGAGTTGTTAGGATAAAGATATGATTATTATTTACTCCAATA--GTNTGTGACTTTAAAACG--CTTTTATNAAGAAAAAAGTCTGAA-ATNTATT-AAAAAACTTACTTCGACCGGGTTTTAAACCCGTCACCTTATGCACTGGGAGCGAGNCGTGAGAG---GAGATCTGGGGGGTGTTATTTATTGGGCTTCTCC-CCCTG-CA-AAAAA--GATATTTAAAAAA-CAAAAACGC---ATTCTAGTAGATTTTAATTGGAAAATGGTTGTTATTTATACCAGTTTG---TGGGGTCTCTGCTGGTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCGA-GAGAGTTTCCCTTNCTGNNGGAG-GTAAGAGGGACC-TCCCCTGGAAAATCTTGATATCTTAAAAGTCAAATGATGCATTATAGCAAGTTTTAT-AGTGTATT--AGGGGAAAGCTGGTTGTTATTTACTCCAACATTTTCACGGTGACATTTAAACGTTTTTATTAAGAAAGAAAAACTGTAAGATGTATTAAACNGGAACTTTCACTGTTTCACTGGGTTGT-AAACCCAATTCACTGCAAACTAATTAAGAGGAAGAAGGTGGGAAGCGGGTTTGTGTCGATGCTGCGGCCTCCCCCGGAAAGTAACATTGATATAAT-G-TTAAAACAACAAATGCTGCA-TTCTAGTTAGCTTTTAGGATAAAAATATGGTTGTCATTTACTCAAGAT-ATTTTTTGTATTTTGTGACTTTTAAACATATTTTATCAAATTTTT-------TTTGGAGTG-----AGGGGTG---GGCAGAGTAT--------ATGCTGCCCCTCC--ACCTTAATATTGGGT---------G--GGGGAGGAACATACGCCTTTGTTTTTACGCCACTTTCTGAAGCTTCGCCAGTTCGAATTGCAGCCGGCAGACACTACATCCAAAAAGGCG--TAGTGACGCACTGTGCATATACATAAATTGACAAAACCTTAAATTTTGTGCGAAAAGTATTTATACCCGACA--GAAAATTACCAAGTTATAAATTCAAAATATAAAAAATCTAA-A-------AAAAATCAATAACTATAATCGCAATATTTATATCGTCTTAATTTACCANTTTGAATAATTGGCATTATGTGCCAGCGTGTTTTATAAATCTTTAACTTTCTAATACGATGTAGATTATATTAAAAAGTTAATAGATAACACATTGAAAACGACATAT------------TTATCTATCTTAAATATAAGGGGGGTCAATATACGTT----TCCGTAATTA
Reference ( family-1845 ) : ATATTGACCATTTGATCGATTATTATAAACGAGTGATAAATATATTAAACGTTGTTTACTCAATTTAAATAAGTGTT-TAAAGTATTACCGTGTG---TTATTT--TGT--AATA--TTACAAAAAAANATT-CTCGCGA-TTATATACGTGCATATGTATCATATATAAATTTTCATTGGCGTAGGAGCCTTTTAATTACTTGGGAAGCAAACCTGGCGAGAGAGTGTAGGAGAAAGAATCCCCTCCCAT------AGTTGAGGGTACGGGGGCCT-CCATCGGATCAT---TTTGAT--ATCTTAA-AT-CCA---GCTGTTGCG-TTCAATGGAGTTGTTAGGATAAAGATATGATTATTATTTACTCCAATA--GTNTGTGATTTTAAAACG--CTTTTATNAAGAAAAAAGTCTGAA-ATNTATT-AAAAAACTTACTTCGACCGGGTTTTAAACCCGTCACCTTATGCACTGGGAGCGAGNCGTGAGAG---GAGATCTGGGGGGTGTTATTTATTGGGCTTCTCC-CCCTG-CA-AAAAA--GATATTTAAAAAA-CAAAAACGC---ATTCTAGTAGATTTTAATTGGAAAATGGTTGTTATTTATACCAGTTTG---TGGGGTCTCTGCTGGTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCGA-GAGAGTTTCCCTTNCTGNNGGAG-GTAAGAGGGACC-TCCCCTGGAAAATCTTGATATCTTAAAAGTCAAATGATGCATTATAGCAAGTTTTAT-AGTGTATT--AGGGGAAAGCTGGTTGTTATTTACTCCAACATTTTCACGGTGACATTTAAACGTTTTTATTAAGAAAGAAAAACTGTAAGATGTATTAAACNGGAACTTTCACTGTTTCACTGGGTTGT-AAACCCAATTCACTGCAAACTAATTAAGAGGAAGAAGGTGGGAAGCGGGTTTGTGTCGATGCTGCGGCCTCCCCCGGAAAGTAACATTGATATAAT-G-TTAAAACAACAAATGCTGCA-TTCTAGTTAGCTTTTAGGATAAAAATATGGTTGTCATTTACTCAAGAT-ATTTTTTGTATTTTGTGACTTTTAAACATATTTTATCAAATTTTT-------TTTGGAGTG-----AGGGGTG---GGCAGAGTAT--------ATGCTGCCCCTCC--ACCTTAATATTGGGT---------G--GGGGAGGAACATACGCCTTTGTTTTTACGCCACTTTCTGAAGCTTCGCCAGTTCGAATTGCAGCCGGCAGACACTACATCCAAAAAGGCG--TAGTGACGCACTGTGCATATACATAAATTGACAAAACCTTAAATTTTGTGCGAAAAGTATTTATACCCGACA--GAAAATTACCAAGTTATAAATTCAAAATATAAAAAANCT---A-------AAAAATCAATAACTATAATCGCAATATTTATATCGTCTTAATTTACCANTTTGAATAATTGGCATTATGTGCCAGCGTGTTTTATAAATCTTTAACTTTCTAATACGATGTAGATTATATTAAAAAGTTAATAGATAACACATTGAAAACGACATAT------------TTATCTATCTTAAATATAAGGGGGGTCAATATACGTT----TCCGTAATTA
gi|1 : ATATTGACCATTTGATCGATTATTATAAACAAGTGATAAATATATTAAACGTTGTTTACTCAATTTAAATAAGTGTT-TAAAGTATTACCGTGTG---TTATTT--TGT--AATA--TTACAAAAAAAAATT-CTCGCAA-TTATATACATGCATATGTATCATATATAAATTTTCATTGGCGTAGGAGCCTTTTAATTACTTGGGAAGCAAACCTGGCGAGAGAGTGTAGGAGAAAGAATCCCCTCCCAT------AGTTGAGGATACGGGGGCCT-CCATCGGATCAT---TTTGAT--ATCTTAA-TT-CCAA--GCTGTTGCA-TTCAATGGAGTTGTTAAGATAAAGATATGATTGTCATA-ACTCCAATA--TTTTGTGATTT--AAATA---TTTTATAAAGAAAAAAGTCTGAA-ATGTATT-AAAAAACTTACTTCGACCGGGTTTTAAACCCGTCACCTTATGCACTGGGAGCAAGCCGTGAGAG---GAGATCTGGGGGGTGTTATTTATTGGACTTCTCC-CCCTG-CA-AAAAA--GGTATTTAAAAAA-CAAAAATGC---AATCAAGAAGATTTTAATTGGAAAATGGTTGTT-TTTATACCAGTTTG---TGGGGTCTCTGCTGGTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCGA-GAGAGTTTCCCTTTCTGTAGGAG-GTAAGAGGGACC-TCCCCTGGAAAATCTTGATATCTTAAAAGTCAAATGATACATTATAGCAAGTTTTAT-AGTGTATT--AGGGGAAAGTTGGTGGTTACTT-------------CACGGTGACATTTAAACGTTTTTATTAAGAAAGAAAAACTGTAAGATGTATTAAACCGGAACTTTCACTATTTCACTGGGTTGT-AAATTCAATTCACTGCAAACTAATTAAGAGGAAGAAGGTGGGAAGCGGGGTTGTGTCGATGCTGCGGCCTCCCCCGGAAAGTAACATTGATATAAT-GGTTAAAACAACAAATGCTGCA-CTCTAGTTGGCTTTTAAGATAAAAATATGGTTGTCATTTACTCAAGAT-ATTTTTTGTATTTTGTGTCTTTTAAACATATTTTATCAAATTTTT-------TTTGGAGTG-----AGGGGTG---GGCAGAGTAT--------ATGCTGCCCCTCC--ACCTTAATATTGGGT---------G--GGGGAGGAACATACGCCTTTGTTTTTACGCCACTTTCTGAAGCTTCGCCAGTTCAAATTGCAGCCAACAGACACTACATCCAAAAAGGCG--TAGTGACGCACTGTGCATATATATAAATTGACAAAACCTTAAATTTTGTGTGAAAAGTATTTATACCCAACA--GAAAATTACTAAGTTATAAATTCAAAATATAAAAAATCTAA-A-------AAAAATCAATAACTATAATCGCAATATTTATATCGTCTTAATTTACCATTTTGAATTATTGGCATTATGTGCCAGCATGTTTCATAAATCTTTAGCTTTCTAATACGATGTAGATTATATTAAAACGGTAATAGATAACACATTGAAAACAACATAT------------TAATCTATTTTAAATATAAGGGGCGTCAATATACGTT----TCCGTAATTA
gi|10 : AAGAGAAATAGTGTGGTTAGCGGGTTTGTTGCGGTGCTGGGACCTTCCCCGAAAA--AA---------AA----TTAAAATATCAAATGTT-CATTTCTAGTTAGGTTTTAGGATAAAAATACGGTTGTCA-TTACTCCAGAT-G--TTTGGTATTTTGTGACACTTAGACAT-TTTTATCAATCCTTTACTCATATTTGGAATGATGTTAGGGGTGGCTGGAAAAGAAT--------ATGCTGCCACTCCCGACCTTAATATTGGGA---------G--AGGG
gi|11 : ATCTCGTCCCGTTGGTAGAGATGAGGG-ATGGAGGCTT-CT-CCGGAATAT------GAA--ATCTTAA-AAACCAAATGCTGTTGTG-T--AGCGAGTTTTTTAGGATAAAAATAAGATTTTTGGTTATTTCACTATTTTTTTTTACTTTGAAACGATTTTTTTTAAAGAAAAAAA---AAAGATTTATT-A
gi|12 : ggggtggggtttGGAGGGGTAACCCCCTCCTAT------TGGTGAGGGTACGGAGGACGACCCTCGAAACGTAAACATAATCAACATTAA-AT--CA--------TGCGTTTTAGTGG-GTTTATAGGCTGAAAATATGAACGTTATTTACTCCAATA--GCGTACGTCCTTCAAACG--TTTTTATTAAAGAAA
gi|13 : gGAGAGTAAAAGA------CCCTCAGAAATTTCTAACATCATCAGTATCAAATCATGCATTCTAACGAGTTTT-T-GCGGGATT--GGGGTA----TGATTATTATTTACTCCA----TCTCAC--T----TTTAAATGCTTTTATTAAtacattcataa
gi|14 : gtaggggtagcccctcgtgttagtagggatacaGGGATCATCCGGTGGAAA---TGGATATCTTAAAAA-CAAA--ATGC--TGTCGCA-----TATTAGTAAATTTAAGGGGAAA-CTGATTGTTATTTATTCCAATATTTT----GTGACTTTTAAACGTTTTCATTAAGAa
gi|16 : tatggaggcgtggggagttgGGTATGCATATTATTTACTCCAATA--GTATGTGACTTTAAAACG--CTTTTATTAAGAAA
gi|17 : gggagatgAAAAGCGAATTTCAACCAGGTTTTAAACCCGTTACTTTTCGCACTGGGAGAGGGA--TGAGAGTGTGAGA------GGGTGTcacctacacaag
gi|18 : ttGGTATGCATATTATTTACTCCAATA--GTATGTGACTTTAAAACG--CTTTTATTAAGAAA
gi|19 : ggagatgCCCCGGAA-GT--TATTGATAT------CTAAAACACTTAATGCTTCA-TTGTAGTCAGTATTTAGGATAAAca
gi|2 : ATATTGACCATTTGATCGATTATTATAAACAAGTGATAAATATATTAAACGTTGTTTACTCAATTTAAATAAGTGTT-TAAAGTATTACCGTGTG---TTATTT--TGT--AATA--TTACAAAAAAAAATT-CTCGCAA-TTATATACATGCATATGTATCATATATAAATTTTCATTGGCGTAGGAGCCTTTTAATTACTTGGGAAGCAAACCTGGCGAGAGAGTGTAGGAGAAAGAATCCCCTCCCAT------AGTTGAGGATACGGGGGCCT-CCATCGGATCAT---TTTGAT--ATCTTAA-TT-CCAA--GCTGTTGCA-TTCAATGGAGTTGTTAAGATAAAGATATGATTGTCATA-ACTCCAATA--TTTTGTGATTT--AAATA---TTTTATAAAGAAAAAAGTCTGAA-ATGTATT-AAAAAACTTACTTCGACCGGGTTTTAAACCCGTCACCTTATGCACTGGGAGCAAGCCGTGAGAG---GAGATCTGGGGGGTGTTATTTATTGGACTTCTCC-CCCTG-CA-AAAAA--GGTATTTAAAAAA-CAAAAATGC---AATCAAGAAGATTTTAATTGGAAAATGGTTGTT-TTTATACCAGTTTG---TGGGGTCTCTGCTGGTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCGA-GAGAGTTTCCCTTTCTGTAGGAG-GTAAGAGGGACC-TCCCCTGGAAAATCTTGATATCTTAAAAGTCAAATGATACATTATAGCAAGTTTTAT-AGTGTATT--AGGGGAAAGTTGGTGGTTACTT-------------CACGGTGACATTTAAACGTTTTTATTAAGAAAGAAAAACTGTAAGATGTATTAAACCGGAACTTTCACTATTTCACTGGGTTGT-AAATTCAATTCACTGCAAACTAATTAAGAGGAAGAAGGTGGGAAGCGGGGTTGTGTCGATGCTGCGGCCTCCCCCGGAAAGTAACATTGATATAAT-GGTTAAAACAACAAATGCTGCA-CTCTAGTTGGCTTTTAAGATAAAAATATGGTTGTCATTTACTCAAGAT-ATTTTTTGTATTTTGTGTCTTTTAAACATATTTTATCAAATTTTT-------TTTGGAGTG-----AGGGGTG---GGCAGAGTAT--------ATGCTGCCCCTCC--ACCTTAATATTGGGT---------G--GGGGAGGAACATACGCCTTTGTTTTTACGCCACTTTCTGAAGCTTCGCCAGTTCAAATTGCAGCCGGCAGACACTACATCCAAAAAGGCG--TAGTGACGCACTGTGCATATATATAAATTGACAAAACCTTAAATTTTGTGTGAAAAGTATTTATACCCAACA--TAAAGTTACTAAGTTATAAATTCAAAATATAAAAAATATAA-A-------AAAAATCAATAACTATAATCGCAATATTTATATCGTCTTAATTTACCATTTTGAATAATTGGCATTATGTGCCAGCATGTTTTATAAATCTTTAACTTTCTAATACGATGTAGATTATATT------------------------AAAACGGCATAT------------TAATCTATCTTAAATATAAGGGGGGTCAATATACGTT----TCCGTTAT
gi|20 : tTATGCTTATTATTTACTCCAATA--GTTTGTGACTTT-AAACG--CTTTTATTAA
gi|21 : ggggtgGGGTAGGGGTATGATTATTATTTACTCCAATA---TTTTTTACTTTAAAACG--CTTTTA
gi|22 : TAGGATTATCATTTACTCCAACA--GTATTTGACTTTAAAACT--CTTTTA
gi|3 : gggagGGAGGGTGTTATATATTGGGCTTCTCC-TC-TG-CATAAAAA--GATATTTAAAAAA-CATACATGC---ATTCTAGTAGATTTTAATCGGAAAATGGTTGTTATTAATACCAGTTTG---TGGGGTCTCGGCTGGTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGA-GAGAGTTTCCCTTGCTGGTGGGG-GTAAGAGGGACC-TCCCCTGGAAAATCTTGATATCTTAAAAGCCAAATAATGCCTTATAGCAAGTTTTAT-AGTGTTTT--AGGGGAAAGCTGGTTGTTATTTACTCCAACATTTTCACGCTGACATTTAGACGTTTTTATTAAGAAAGAAAAACTGTATGATGTATTAAACAGGAACTTTCACTGTTCCACTGGGTTGT-AAACCCAATTCACTGCAAACTAATTAAGAGGAAAAAGGTGGTAAGCGGGTTTGTGTCGATGCTGCGGCCTCCCCCGGAAAGTAACATTGATATGATAG-TTAAAACAACAAATGCTGCA-TTCTAGTTAGCTTTTAAGATAAAAATATGGTTGTCATTTACT---GATGATTTTTTGTATTTAGTGACTTTAAAACATATTTTATCAA--TTGT-------TTTGGAGTG-----GAGAGTG---GGCAGAGTAT--------ATGCTGCCCCTCC--ACCTTAATATTGGGT---------GGAGGGGAAGAACATACGCCTTTGTTTTTACGCCACTTTCTGAGGCTTCGCCAGTTCGAATTGCAGCCGGCAGACACTTCATCCAAAAAGGCG--TAGTGACGCACTGTGCATATACATAAATTGACAAAACCTTAAATTTTGTGTGAAAAGTATTTATACCAAACA--GAAAATTACCAAGTTATAAATTCAAAATATAAAAAATCTAAAA-------AAAAATCAATAACTATTATCGCAATATTTATATCGTCTTAATTTACCACTTTGAATAATTGGCATTATGTGTAAGCATGGTTTATAATTCTTTAACTTTCTAATACGATGTAGATTATATTTAAAAGTAAATTGATAACACATCGAAAA
gi|4 : tttaaatattttatgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntatgAA--GATATTTAAAAAG-CAAAAAAGC---ATTTTAGTAGATTTTAATTGGAAAATGGTTGTTATTTATACCAGTTTA---TGGGGTCCCTGCTGGTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGAAGAGAGTTTCCCTTGCAGGTGGGG-GTAAGAGTGACC-TCCCCTGGAAAATCTTGATACGTTAAAAGCCAAAAAATGCATTATAGCAAGTTTTAT-AGTGTATA--AGGGGAAAGCTGGTTGTTATTTACTCTAACATTTTCACGGTGACATTTAAACGTTTATATTAAGAAAGAAAAACTGTAAGATGTATTAAACAGGAACATTCACTGTTTCACTGGGTTGTAAAACCCAATTCACTGCAAACTTATTAAGAAGAAGAAGGTGGGAAGCGGGTTTGTGTCGATGCAGCGGCCTCCCCCGGAAAGTAACATTGATATAATAG-TTAAAACAACAAATGCTGCA-TTCTAGTTAGCTTTTAAGATAAACACATGGTTGTCCTTTACTCAAATT-TTTTTTTGTATTTTGTGACTTTTAAACATATTTTATCAA--TTTA-------TTTGGAGT------AGGGGTG---GGCAGAGTATATGGCATAATGCTGCCCCTCC--ACCTTAATATTTGGTGGGGGGAGGG--GGGGAGGAACATATGCCTTTGTTTTAACGCCACTTTTTGACGCTTCGCCAGTTTGAATTGCAGCCGGCAGACACTACATCCAAAAAGGCG--TAGTGACGCACTGTGCATATACATAAATTGACAAAACCTTAAATTGTGTGTGAAAAGTATTTATACCCAACA--GAAAAGTACCAAGTTATAAATTCAAAATA---------T---A-------AAAAATCAATTACTATAATCACAATATTTATATCGTCTTAATTTACCATTTTGAATAATTGGCATTATGTGCCAGCATGTTTTATAAATCTTTAACCTTCTAATACGATGTCGATTATATTAAAAAGTTAATAGATAACACATTGAAAACAACATAT------------TTATCTATCTTAAATATAAGGGAGGTCAGTATACATT----TCCGTA
gi|5 : AAGACATGATATTTT---CTAAAAGTATTTATATCCGACA--GAAAATTGCCTAGTTATAAATTCAAAATATAAGAAAGCT---ATTTTTTT-----TCAAAAACTATAATCGCAATATTT-TCTGGTCTTAATTTACCAATT-----------CATTATGTGCCACCATGTTG-ATAAAGCT---ACGATATA-TA-GATCAAGATTATATTAAAAAGTTAATAGATAACGCATTGAAAACGACATAT------------TTATTTATTTTAAATATAAGGGGGGTCAATATACGTTTTCATCCGTAGCTAt
gi|6 : tagtaacaactgtcttaaatgtagattacttcaagtataATCTTCACCATTTGATCGATTATTATAAACGAGTGATAAATATGTTAAACGTAGTTTACTCAATTT--ATAATTTTTATACAAT-TTAACATTTGATTTTAATTCATGTTAAATGGCTTGTAAATAAGTGTT-ACCGTGAGTTATATAcatgtttttccaaaaccgtatattatttagtcttatttgtggggtatataaccttgatttactgatgtagatgtacatttatgtacac
gi|6 : AAGTGTTACCGTGAG---TTATAT--AGT--AATA--CTACAAAAAAACATTTCTCGCGA-TTATTTACGTGTAAATGTATCATATATAAATTTTTATTGGCGTAGGAGCGTTTTAATTACTTAGGAGACCAACTTGGCGAAAGAGTGTAGGAGAAAGA----------AT------AATTGAGGCTACGGGGGCCT-CCATCGGATTAC---TTTGAT--ATCTTAATCC-CCA---GCTGTTGCA-TTCAATGGAGTTGTTAAGATAAAGATAgtaatactacaaaaaaacatttctcgcgattatttacgtgtaaatgtatcatatataaatttttattggcgtaggagcgttttaattacttaggagaccaacttggcgaaagagtgtaggagaaagaataattgaggctacgggggcctccatcggattactttgatatcttaatccccagctgttgcattcaatggagttgttaagataaagata
gi|7 : atcttcaccatttgatcgattattataaacgagtgataaatatgttaaacgtagtttactcaatttataatttttatacaatttaacatttgattttaattcatgttaaatggcttgtaaatTTTTATAAA-AAGAAAGTATAAA-ATTTATTTAAAAAAGT-----CGACCGGGTTTAAAACCC-------T-TGGA--GGGAGTGATACATG---------GTTTTGCGG--------TTATTGGGGT---CCACCCTGGCA-ATAAGTTGATATTAAAAAAAACAACAACACGGAATTCTAGTAGAATTTAATTGTAAAATGGTTTTTATTTATACCAGTGTGGGAGGGGGTCT
gi|7 : ataGTGGGAGG-GGGTCTAT-T--ATGC------CTACCCCGGAA--TAAGA---ATA-AAT---CTAAAACACCAAATGCTGCA-TTCTATAAAGTTTTCAGCAAAAAGGTATGGTTGAAATTTACTCTAGAattatgcctaccccggaataagaataaatctaaaacaccaaatgctgcattctataaagttttcagcaaaaaggtatggttgaaatttactctagagtgggagagggtg
gi|8 : atattttataaaaagaaagtataaaatttatttaaaaaagtcgaccgggtttaaaacccttggagggagtgatacatggttttgcggttattggggtccaccctggcaataagttgatattaaaaaaaacaacaacacggaattctagtagaatttaattgtaaaatggtttttatttataccagtATCCAAAAAGGCGCGTAGTGGCGTACTATGCATGTACATAAATTGATAAAACCTTACATTTTGTTCGAAAAGTATTTATATCCGACACTG----TTTCCAAGTTATAAATTCAAAACATAAAAATACTTGGA-------AAAAATCAATAACTATGATCGC------TATATCGTCCTAATTCAACAATTTGAATAATTGGCATTATGTGCCATCGTGTTTTATAAAGCTTCAACTTTCTAATACGATGCAGATTCTATTAAGAAGTTAATAAGTAACACATTGAAAACAACATAT------------TTA--TATCTTAGATATAAGGGgtgggagagggtg
gi|9 : TAAATTGACGAAACGTTAAGTTGTGTGCGAAAAGTATTTATATCCATCA--AAAAATT-----GTTATAAATTTAGAATATAA-----CT---T-------TATTTTCAA-GACTATAATCGAAATATTTATATCGCCGTGTTTTACAAATTTGAATA-----TATTATATGCCCACGTGTGT-ATAAAACATTAACGTTCTAAAACGATATAATTTCTATTAAAATATTAATCGATAACATATTTAAAATGACATATTTATTAATATATTTATCTATTTTAAATATAA-ATGGATCAATATATGTT----TTCGTAATTa
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|15 ): GGAGGGTTAATCGTTTCTGTTGGTGAGGGACATAGAGAACGATCATTGGAAATCTTTAACTTTATCAACGTTAAATCGTGCATTCTTGTAAGGTTTTAGGG