lowQualScore : 111111111111111111111111111111111111111111 111111111111111111111111111111 111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 2222222222222222222222222222222222222222222222222222222222
lowQualScore : 11 000000000000000000000000000000000000000000 1 111111111111111111111111111111 22 1 2222 222 555555555555555555555555555555555555555 2222 1 1 111 1 111 11 1 1111 44444444444444444 1 111 11 1111 333333 1 1 888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888 111 1 1 1 1111 666 11 111111 11111 8888888888888888888888888888888888888888888888888888888 8888888888888888888 1111 1 22 1 1 44444444 33333333333 11 555 0000000000000000000000000000000000000000000000000000000000
lowQualScore : 22 333333333333333333333333333333333333333333 7 6 3 111111111111111111111111111111 6 77 7 6 3333 111 777777777777777777777777777777777777777 6 8888 3 3 3 444 55 3 5 333 99 6 4 0 0000 88888888888888888 0 6 444 3 22 6 7777 5 333333 6 4 5 77 999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999 5 1 5 3 666 1 5 3 5 3 6 4 7 5 5 55 0000 111 4 6 44 1 999999 1 44444 77 7777777777777777777777777777777777777777777777777777777 3 1111111111111111111 5 7 1111 6 1 0 11 77 77 7 3 1 1 8 1 1 666 33333333 0 7 00000000000 66 0 6 88 8 777 5555555555555555555555555555555555555555555555555555555555 6 6
lowQualScore : .. .......................................... . . . .............................. . .. . . .... ... ....................................... . .... . . . ... .. . . ... .. . . . .... ................. . . ... . .. . .... . ...... . . . .. ........................................................................................................................ . . . . ... . . . . . . . . . . .. .... ... . . .. . ...... . ..... .. ....................................................... . ................... . . .... . . . .. .. .. . . . . . . . ... ........ . . ........... .. . . .. . ... .......................................................... . .
lowQualScore : 00 777777777777777777777777777777777777777777 0 0 7 888888888888888888888888888888 0 55 0 0 5555 000 555555555555555555555555555555555555555 5 3333 3 3 7 333 66 0 0 555 00 8 0 8 6666 00000000000000000 0 0 000 8 88 0 0000 0 000000 6 0 0 99 999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999 7 7 6 9 000 7 0 0 3 9 0 3 0 9 0 22 6666 000 1 5 77 9 444444 7 33333 99 7777777777777777777777777777777777777777777777777777777 2 2222222222222222222 0 8 2222 7 7 8 88 99 99 3 9 7 4 6 7 4 777 22222222 3 8 22222222222 66 8 0 66 0 777 3333333333333333333333333333333333333333333333333333333333 0 0
consensus : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNCACCCGCTCA-A--TCCA----CAT-CCCCCCCATATC---GCTCCCAT-TGCATGAGGTACCGGNTTTAAAA--CNTGTTGNAAGTTCGGGTTTAAAT-AC-ATCTTTTTTTTCTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAGAACCTTACAAGAATGCAGCATTTGGTTTTCAAGATATT-AAAC--TGTTCCG-GGAGAG-GTCC-CCG---TACC--N-C-CACCAGC----AG-GGGAT-TCNCCTGANG-CAACGAATGTCGTTCCTGCTGAGCTCT-ACGATGNACCAGAATGCACGATTTGGCACTAAGAAAAC----CAAAATAATTT--GGGGGAGGCCCC-AAAACACCCCCAGAATTATATTTTTCAGTTTCT---GATCTAAATTCTGATG----TATTTTATACCATT----C-GAGTATAANATGGAAGGACTGACAGGACCTGAAAA--A-GCACCAAAAT-GCA--CGA--------TTTGGCACTTAGAAAACCAAAAT-----T--TCCCTAGGGGAGACCCC-CCCC-------------------------C-ATG---------GC-GGGANGGGAGACCC-CTCCGGTACTCTTCCCCTCCTCGCAAGCCGCGTGCATTTCCCTGGCCCCCTACCAAACGGT-TTT-CCTCGATATGAATTCCTTTC----TGGCT---ACGTCCCTGCTCTTTTTCTTAACAA---AA-ACTTAC-----A--AGA----ATGC-AT--CATTTGNT---TTTTAAAATA------TT------T------TTCCGGGGAGNC-CC-CCC----------G-TACCAGGGAACTCACCCACCCA--TATCTC-CCCACATCT-TGCT--CCCA--TTGCATGAGGTACCGGGTTTAAAACCCGTTG-GA-A-TTC---CGTTTTTTTAATACATCTT-----TTTTTTTTTTTCTTAATAAAAACGT-TTAAA-AGTCACAAAATATT-------GGAGT---------CCAT---ATTTTA-TCATA-AAA-T-CTCCC-----GATAATGCAGTAT
Reference ( gi|1 ) : TAGTTCAACTGAATAATTGATATAACCACCACTTGCTCA-A--TCCA---ACATGCTCCCTCACCTTTTAACTCGCAA-TCCATGAGGTTCTGGGTTTAAAA--TAT-TCGGGAGTACCAG--TAAATAACAATCTTTTTTCTCTCTAACTTGTAAAAATACAGCATACAGTTCTTAAGATCACAAAAGTGTCCAGGTACCCCCACCAGCAGGGGACAACCCCTCCAAGACCAAACTGCAGTAAATCAGACAACCATATTCTTTAATCCTGAAAACTTTTTTTTCTCGGGGTAGGTCCCCATAGCCACACCAGCAACAGATGCGACATTTTGTAATTTGAACAACTATTTCCTCTCTCAAA--CTTACTAAAATGCAGTATTTGCTTATTAAGATA-T-AAACAATATTACAAAGAGAG-GTCC-TCG---TACC--A-C-CACCAGC----AG-GGGAT-TCCCCTGAGA-CAACGAATGTTGTTCTTGCTCAGTTTC-ACAATTAACCAGAAAGCACGACTTGGCACTAAGAAAAC----CAAAACAATTT--GGTGAAAGCCCC-AAAACACCCCCAGAATTATATTTTCCAGTTTCT---GATCTTAATTCTGATG----TATTTTATACCATT----T-GAGTATTAAATCGAAGGACTGACAGGACCTGAAAA--A---------AT-GCA--CAA--------TTTGGCAC-----------AAAT-----T--TCCCTAGGGGAGACCCCTCCCC-------------------------C-ATA---------GC-AGAAAGGAAGACCT-TTCCGGTACTCCTCCCTTCCTCTCAAGCCGTGTGTATTTCCCTGGCCCCCTACCAAACCGT-TTT-CCTCGATATGAATTCCTTTC----TGGCTGAAATGTCTCTGCTCATTTTCTTAACAA---AT-ACTTAC-----A--AGA----A-GC-ATTTCATTTTTT---TGTCAAAATA------TT------T------TTCCGGGGAGGC-TT-TCC----------A-TACCAGGGAACTCACCCACCAA--TATCTC-CCCACTTCA-TGCT--CCCA--TTGCGTGAGGTACTGGGTTTAAAAGCCATTG-GA-A-TTC---TGTCTTTTTAATATGTCTT-----TTTTTTTTTTTCTTAATAAAAAAGT-TTAAGTTGTCACAAAATATTGGTTCAAGGAGTAAATGACAACCAT---ATTTTA-TCATA-AAA-T-CTCCCTATATAATAATACAGCATGTTCCAGGGATCCC
gi|4 : CACCCACTCATA--TCCA----------CCCACATATT---GCTCCCAT-TGCATGAGGTACCGGGTTTAAAACCCAT-T-GTAAGTTCGGGTTTAAAT-AC-ATCTTTTTTTTCT
gi|3 : gcaacgaatgtcgttcctgctggactctacaatgaaccagaatgcacgatttggcactaataaaacaaaacaaaaaaataggggatgtccccaaaacacccccaaaattacaattttcagtttctgatctaaattctgatggatgtatctaataccactagaatagagtatgaaatgaaaggaatgacaggaacggaaaaaggcatccgaatatccgttttgaaacctaggaaaccaactcctcggggagacaccaacctatggcgggatgggagacccagtccggtactcttcccctcctcgcaagccgcgtgcatttccctggtccctaccaaacggtattcctcgatgtgaactcctttttcagtggctatgtccctactctgtttctttacaaaaactttcaagaatgcagcattcgaattttttttcggggaaacccccgtaccagggaattGCTCA-ACCTCC-----CATACCTCCCCACATCTTG-CTCCCAT-TGCATGAGGTACCGGATTTAAAA--
gi|5 : actaaaatgcacgctttggcactaagaggaccaaaatttcacaggggctccactatgacgagattggagacccctccagtactcttcactttctcgcaagccacgtgcttttcgctggcccctaccaaacgttttatttcgatatgaattcctttcttgatacatccctgctctttttcttaactaaaacaaaaattagaatgcatcgtttggtttttaaaacatttaactttttccggggagccccctccccacataccagggaCTCA----TCCACCCATAT-CTCCCCCATCTT---GCTC-CAACTGCATGAGCTACCGGTTTTAAAA--CCTGTTGGAAGTcccgttggaagttcatttttttaatacatcttaataaaaatatttaaaagtcacaaaatattggagtatattttatcataaaatctcccgataatgcagtatttggtattaagatatcaaactgttccagagaccatccaccgctttaccccatccaccagcgggaagggtatatttcctgatacattctcttctcatgtcggctccgaaataacttaaacgctcctactacgcccatgaagttgtgttatat
gi|2 : ggctctataatgaaccaaaatacactttttggcactaaaaaacaaagtaatttgggggaggcccccaaaacatccccagaattatatttttcatttttttttgtcgaaattctgatgaattttataccattctaatataatatgaaaggactgacaggacctggaaaatgcaccaaaatgcacgatttggcacttaaaaacccaaaatttcctagggaatacccccccccccccccgaccccaccccacaccctccataagtaggaaaggagactctacagtactcttcccctcctcgcaagacgtgtgcatttccctgacccctaccaaacggttttgcttgatatgaaatcctttctggctacgtccctgctctttaacttaacaactcatgacttatcgtataagaatgcagcatttgctgtttttttccggggaggccccagtatcaggcaaCAAAACCTTACAAGAATGCAGCATTTGATTTTCGAAATGTT-AAAC-TTTTTTC--GGAGAG-GCCC-CCG---CACC--A-TACACCt
gi|10 : attttcgaggagaggttgccgtacccaaatcagtaggggattcacctgagggcaacgaatgttgttcctgttgggttctataataaaccagaatgcacgatttgtcacgaagataacaaacaaaaaaaaacacccctagaattatatttttcagcttctcatcaaagttctgatgtattttatacatttcgagtataagatggaaggaatgacaggacctgaaaaatgcaccaaaatgcacgattttgcacttagaaaaacaaaatttcctatggagaccccctccatggcaaaaagggagaccgcttcggtactctttccctcctcgaaagccgcgtgcatttcctggccccagcaaacggttttcctcgatataaattcctttctggctacgtcagaaaaAGA--CTTACAAGAATGCAGCATTTGTTTTTCAAAATATT-AAACcatatgccccgcctcttgtaacccattgcttaaggtaccgggtttcaaacccgttgagagttcatatatttaatatatcttatattttttcttaaaaaaaacatttaaaagtc
gi|3 : aatgcatggtttggtacttaaaaatgaaaattttcaaggggagaccccaccccctattgcgggatgggagatccctatggaactcctcctctcctcataagccacgtgcattgccctggccccttacaatcagtattttcacaatatgaattcctttctggctacttccgtaccctttttcttaacaaAATGCAGTATTTGGT-ATTAAGATA-TCAAAC--TGTTCCA--GAGACCATCCACCGCTTTACCCCATC-CACCAGCGGGAAG-GGTATATTTCCTGATA-CAtttttccagggagcccccacc
gi|20 : actaaaatgcacgctttggcactaagaggaccaaaatttcacaggggctccactatgacgagattggagacccctccagtactcttcactttctcgcaagccacgtgcttttcgctggcccctaccaaacgttttatttcgatatgaattcctttcttgatacatccctgctctttttcttaactaaaacaaaaattagaatgcatcgtttggtttttaaaacatttaactttttccggggagccccctccccacataccagggagctcaacctcccatacctccccacatcttgctcccattgcatgaggtaccggatttaaaacccgttggaagttcatttttttaatacatcttaataaaaatatttaaaagtcacaaaatattggagtatattttatcataaaatctcccgatGCAGTATTTAGTGTTTAAGATA-T-CAA-AATGTCCCACAGCCAG---CT-TCC---TGCC--C-C-CA-TAGC----AGCGGGAA-CCCCttctcttctcatgtcggctccgaaataacttaaacgctcctactacgcccatgaagttgtgttatat
gi|2 : TTTCGAGGAGAG-GTTG-CCG---TACC--C-A-AATCAGT----AG-GGGAT-TCACCTGAGGGCAACGAATGTTGTTCCTGTTGGGTTCT-ATAATAAACCAGAATGCACGATTTGTCACGAAGATAAC------AAACAA---------AAA------AAAACACCCCTAGAATTATATTTTTCAGCTTCT---CATCAAAGTTCTGATG----TATTTTATAC-ATT----TCGAGTATAAGATGGAAGGAATGACAGGACCTGAAAA--ATGCACCAAAAT-GCA--CGA--------TTTTGCACTTAGAAAAACAAAAT-----T--TCC-TATGG-AGACCCC--CTC-------------------------C-ATG---------GC-AAAAAGGGAGACCG-CTTCGGTACTCTTTCCCTCCTCGAAAGCCGCGTGCATTT-CCTGGCCCC--AGCAAACGGT-TTT-CCTCGATATAAATTCCTTTC----TGGCT---ACG--TCAG--AA-------AACAA---AA-CCTTAC-----A--AGAATGCA-GC-ATTTGATTTTCGAAATGTTAAA--C------TT------T------TTTCGGAGAGGC--C-CCC----------G-CACCATA-----CACCC----A--TAT-GC-CCCGCCTCT-TG-TAACCCA--TTGCTTAAGGTACCGGGTTTCAAACCCGTTGAGA-G-TTC----ATATATTTAATATATC-------TTATATTTTTTCTTAAAAAAAACAT-TTAA
gi|4 : at-CAACGAATGTCGTTCCTGCTGGACTCT-ACAATGAACCAGAATGCACGATTTGGCACTAATAAAACAAAACAAAAAAATAG--GG-GATGTCCCC-AAAACACCCCCAAAATTACAATTTTCAGTTTCT---GATCTAAATTCTGATGGATGTATCTAATACCACTAGAATAGAGTATGAAATGAAAGGAATGACAGGAACGGAAAA--A---------G--GCATCCGAATATCCGTTTTGAAACCTAGG------AAAC-----CAACTCCTCGGGGAGACACC-AACC-------------------------T-ATG---------GC-GGGATGGGAGACCCAGTCCGGTACTCTTCCCCTCCTCGCAAGCCGCGTGCATTTCCCTGG-TCCCTACCAAACGGT-ATT-CCTCGATGTGAACTCCTTTTTCAGTGGCT---ATGTCCCTACTCTGTTTCTTTACAA---AA-ACTTTC-----A--AGA----ATGC-A--GCATTC-----------GAATT------TT------T------TTTCGGGGAAAC--C-CCC----------G-TACCAGGGAATTCACCCACTCA--TATCCA-CCCACATAT-TGCT--CCCA--TTGCATGAGGTACCGGGTTTAAAACCCATTG-TA-AGTTC---GG--GTTTAAATACATCTT-----TTTTTTCTaagtc
gi|7 : gAATG--GTTCTT----AGCTTCTACCATATACCAGAATGCACGATTTCACATAAAGAAAAT----CAAAAT--TTTCAGGGGGATGTCCC-CAAACATCTATAAAATTCTATTTTTCAGATTCT---GGTCTTAAT--TGATG----TAATTTATACAATT----C-CAGTATAAAAAGGTAGGGCTGACTGCACCTGGAAACCA---------GTAGTA--CAG--------TT
gi|9 : tatgaaacacaaccaagaaattgcttccctgaagaaaaatcatccagagagagcattttttggtagtgagggcatagaatgtcattcatgttgggttctaccagtgacttaataaaatggatatgccATGTCATTACTGCTAAGTTCT-ACGGTGCAACAGAATACACAATTTGGCACTTAGAAAAC----CAAA
gi|8 : taaatgatttaaatatgaatttaacactccgaggaaacaattttgggtagtgtaagtgacttATGTCATTACTGCTAAGTTCT-ACGGTGCAACAGAATACACAATTTGGCACTTAGAAAAC----CAAAtatctccaaataaaatacctcaaatatatacgtcaaattccactaaagtggctaccctgaaaaatgtgaaggaacattttgttgtaatgaggaaagcgaatgtcattcttgctgaatactacaaatcactagaatgcacgatatagcactttt
gi|5 : taaatgatttaaatatgaatttaacactccgaggaaacaattttgggtagtgtaagtgacttGCTCT-ATAATGAACCAAAATACACTTTTTGGCACTAAAAAA------CAAAGTAATTT--GGGGGAGGCCCCCAAAACATCCCCAGAATTATATTTTTCATTTTTTTTTG-TCGAAATTCTGATG----AATTTTATACCATT----C-TAATATAATATGAAAGGACTGACAGGACCTGGAAA--ATGCACCAAAAT-GCA--CGA--------TTTGGCACTTAAAAACCCAAAAT-----T--TCC-TAGGGAATACCCCCCCCCCCCCCCGACCCCACCCCACACCCTCC-ATAA--------GT-AGGAAAGGAGAC-T-CTACAGTACTCTTCCCCTCCTCGCAAGACGTGTGCATTTCCCTGACCCC-TACCAAACGGT-TTT-GCTTGATATGAAATCCTTTC----TGGCT---ACGTCCCTGCTCTTTAACTTAACAACTCATGACTTATCGTATA--AGA----ATGC-AG--CATTTGCT----GTT------------TT------T------TTCCGGGGAGGC-C---CC----------AGTATCAGGCAACTCATCCACCCA--TATCTC-CCC-CATCT-TGCT--CCAA--CTGCATGAGCTACCGGTTTTAAAACCTGTTG-GA-A-tatctccaaataaaatacctcaaatatatacgtcaaattccactaaagtggctaccctgaaaaatgtgaaggaacattttgttgtaatgaggaaagcgaatgtcattcttgctgaatactacaaatcactagaatgcacgatatagcactttt
gi|6 : gACCAAAACACACGACTTGACACTTAGAAAAC----CAAAAgtt
gi|3 : actttctgatctaaatactgatgtattttataccattcgagtaaaacatggaaggactgacaggacctgaaaaaggcACTAAAATGCACGCTTTGGCACTAAGAGGAC----CAAAAtgtcataggaaagacctacatggcgggacgggaaacccttccggtactcgcaagcctcttgcatttccttggcacctaccaaactatttcccttgatatgaattcctttctgactacgtcctgctctttattttaacaaaatcttacaataatgcgacatttggttttcaaaatattaaactttttccgaagagtcctttcctttaccccgtataccagggaactcacccacccatatctccccacatcttgcttccattgcatgaggtacctgatttaaacccgttcgacgttcgtttggttttttaatacatcttattttttttattcataaaaagctattaagagtcacaaaatattggtcccatattcaatcatatagactctccc
gi|6 : TTTCT---GATCTAAATACTGATG----TATTTTATACCATT----C-GAGTAAAACATGGAAGGACTGACAGGACCTGAAAA--AGGCACCAAAAC-ACA--CGA--------CTTGACACTTAGAAAACCAAAAT-----G--TCA-TAGGAAAGACCTA------------------------------C-ATG---------GC-GGGACGGGAAACCC-TTCCGGTACTCG-----------CAAGCCTCTTGCATTTCCTTGGCACC-TACCAAACTAT-TTC-CCTTGATATGAATTCCTTTC----TGACT---ACGTC-CTGCTCTTTATTTTAACAA---AA-TCTTAC-----A--ATA----ATGCGA---CATTTGGT---TTTCAAAATA------TTAAACTTT------TTCCGAAGAGTCCTT-TCCTTTACCCCGTA-TACCAGGGAACTCACCCACCCA--TATCTC-CCCACATCT-TGCT--TCCA--TTGCATGAGGTACCTGATTT-AAACCCGTTC-GACG-TTCGTTTGGTTTTTTAATACATCTTA----TTTTTTTTATTC---ATAAAAAGCTATTAAG-AGTCACAAAATATTGGTC-----------------CCAT---ATTCAA-TCATATAGACT-CTCCCtttcacaggggctccactatgacgagattggagacccctccagtactcttcactttctcgcaagccacgtgcttttcgctggcccctaccaaacgttttatttcgatatgaattcctttcttgatacatccctgctctttttcttaactaaaacaaaaattagaatgcatcgtttggtttttaaaacatttaactttttccggggagccccctccccacataccagggagctcaacctcccatacctccccacatcttgctcccattgcatgaggtaccggatttaaaacccgttggaagttcatttttttaatacatcttaataaaaatatttaaaagtcacaaaatattggagtatattttatcataaaatctcccgataatgcagtatttggtattaagatatcaaactgttccagagaccatccaccgctttaccccatccaccagcgggaagggtatatttcctgatacattctcttctcatgtcggctccgaaataacttaaacgctcctactacgcccatgaagttgtgttatat
gi|3 : acAA--A---------AT-GCA--CGC--------TTTGGCACTAAGAGGACCAAAAT-----T--TCAC-AGGGG------CTCCAC-------------------------T-ATG---------ACGAGATTGGA-GACCC-CTCCAGTACTCTTCACTTTCTCGCAAGCCACGTGCTTTTCGCTGGCCCC-TACCAAAC-GT-TTTATTTCGATATGAATTCCTTTC----T---TGATACATCCCTGCTCTTTTTCTTAACTA---AA-ACAAAA-----ATTAGA----ATGC-AT--CGTTTGGT---TTTTAAAACA------TT------TAACTTTTTCCGGGGAGCC-CCCTCCCCAC------A-TACCAGGGAGCTCAACCTCCCA--TACCTC-CCCACATCT-TGCT--CCCA--TTGCATGAGGTACCGGATTTAAAACCCGTTG-GA-A-GTT---CATTTTTTTAATACA-------------------TCTTAATAAAAATAT-TTAAA-AGTCACAAAATATT-------GGAGT-----------AT---ATTTTA-TCATA-AAA-T-CTCCC-----GATAATGCAGTAT
gi|10 : act--A---------AT-GCA--TGG--------TTTGGTACTTAA-------AAATGAAAAT--TTTCAAGGGGAGACCCCACCCC-------------------------CTATT---------GC-GGGATGGGAGATCC-CTATGGAACTCCTCCTCTCCTCATAAGCCACGTGCATTGCCCTGGCCCCTTAC-AATCAGTATTT-TCACAATATGAATTCCTTTC----TGGCT---ACTTCCGTACCCTTTTTCTTAACAA---AG-ACTTAC-----A--AGA----ATGC-A--GCATTTGTT---TTTCAAAATATTAAACTT------T------TTCCAGGGAGttggtattaagatatcaaactgttccagagaccatccaccgctttaccccatccaccagcgggaagggtatatttcctgatacattctcttctcatgtcggctccgaaataacttaaacgctcctactacgcccatgaagttgtgttatat
gi|12 : -----T--TTCCTAGGTAAGACCCCACCCC-------------------------C-ACACCCCTTATCGC-AGGAAGGGAGACCC-CTTCGGTACTTTTCCCTTCCTGGTAAGCCGCGTGCATTGCCCTGA-CCCCTAACAAACGGT-TTT-CCTCAATAGGAATTCCTTTC----TAGCT---ACGTCTCTGTCTTTTTTCTTAACAC---AG-AC-TAA-----A--TAA----A-AC-ATTTcccccacc
gi|21 : aaaaaactacaCCTCTAACAAACTGT-TTT-GTCTGTTATGATTTCCTTTT----TGACT---ACGTCCCTGCgt
gi|11 : tgtctctaCCTCCAAATCATCTCTCCCA-TCCGCTATT--TCCACGTTGAATGGGGTATTGGCTTTAAAACCCGGCG-AA-A-TTT---CGCATCTT--ATACATCTTACAACTTTTTTTTTTTCTTAATGGTTACAT-TTAAA-AGTCACAAAATATT-------GGAGTAAATAACAACTTTTTGTTTTTATTCA-A-AAA-TACTC
gi|18 : taaaatatttaaattattttgggggttgccccgttGCT--CCTA--GTGCATGCGGTATCGGGTTTAAAA--CAAGGCGA-A-CT------TTTCTTAAATAAATCTT-----TTTTTTTCT---TTAA-AAAAATGT-TTAAagaatgtagtatttggtattatcaaattttc
6 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|13 ): GGGGAGATACCCGTACCCGACAACCCCCGCCACACACACTTCCTCACGCATAAGATACCGGGTTTGAAACCCGATGGAGGGTCGTCTCTATAATAGTTTATTTCTGTTTTGTGTGTATACGTGTGCTGTATTGTACGTGTGCGTGTAAATATCAAACGTTTGTAGTAACCGTGTTTCCCATAAAAGACTTA
Unaligned ( gi|14 ): TGCTGCATTTAATACCATTGCAGTACAATAACAATGTAGGGCTAACAGCACAACTGAAACGGCTGTTATTAGCACGAGATTCGGCACTTGTACGAATCGGCACTTAAAAACATTAAATACTTAGTGAAGACCCCCCACCAACCTGCAACCCCACCC
Unaligned ( gi|15 ): TGCTGCATTTAATACCATTGCAGTACAATAACAATGTAGGGCTAACAGCACAACTGAAACGGCTGTTATTAGCACGAGATTCGGCACTTGTACGAATCGGCACTTAAAAACATTAAATACTTAGTGAAGACCCCCCACCAACCTGCAACCCCACCC
Unaligned ( gi|16 ): TTTTTTTCTTGATATTACGTAAAAACGACACAAAATATCTGAGCAAATAGCAAGCATTCTCCATAAAACGTATTAAAATGCAGCATTTTGATTTTATCATAATTTTTCCCGTAACTCCACCTTCAGTGGACACCCTCTCT
Unaligned ( gi|17 ): CCAACATCTTGCTCCCCAGTGCATTAGGTATCAAGTATAAATCAAATGTAAGCTGTTCGTTTTTAATACATCCCATAGGTTCTAGTGTTATTTTTTTGAAAATTACAAAATATTGGA
Unaligned ( gi|19 ): CGACATCCCCTTAGAACTTTCCCGTCGCCTTGCTTTTCATTGCATGAGGTAACGGATCTGATACCCAATAGAGGCTCACTTTTTTAAATATATATTTT
Alignments
lowQualScore : 11 999999999999999999999 1 222 1 9999999999999999999999999 1 1 1 1 111 555555555555555555555555 1111 1111 1 1 1111 11111 11 111 1111 11111 111 11 5555555555555555555555555555555 22222222222222222 222222222 111111111 2 111111 111 333333333333333333333 222222222222 11111 22222222222222 11111111111111 333333333333333 999999999999999999999999999999999999 1 1 111 222222
lowQualScore : 22 555555555555555555555 5 333 7 6 1 77 5555555555555555555555555 6 6 0 4 4 9 2 44 4 0 7 666 3 000000000000000000000000 5555 3 7777 8 3 1 1 6 6 5 3 3 3 22 2222 33 88888 6 11 8 111 1 3 0000 0 33 22222 777 1 0 0 33 5555555555555555555555555555555 3 8 999 4 66 88888888888888888 999999999 3 666666666 55 1 88 0 0 5 0 4 9999 777 1 0 888 5 222222 66 666 6 7 000000000000000000000 000000000000 22222 66 0 2 888 66 4 3 0 3 44 6 44 3 3 555 44 7 3 77777777777777 66 3 44 99999999999999 55 4 0 3 3 222222222222222 5 333333333333333333333333333333333333 0 3 0 111 2 888888
lowQualScore : .. ..................... . ... . . . .. ......................... . . . . . . . .. . . . ... . ........................ .... . .... . . . . . . . . . . .. .... .. ..... . .. . ... . . .... . .. ..... ... . . . .. ............................... . . ... . .. ................. ......... . ......... .. . .. . . . . . .... ... . . ... . ...... .. ... . . ..................... ............ ..... .. . . ... .. . . . . .. . .. . . ... .. . . .............. .. . .. .............. .. . . . . ............... . .................................... . . . ... . ......
lowQualScore : 00 000000000000000000000 0 000 0 0 0 00 0000000000000000000000000 0 0 5 0 7 0 0 88 5 0 2 222 8 222222222222222222222222 0000 2 0000 0 3 0 0 7 0 0 4 4 4 99 1111 00 00000 4 22 0 777 7 5 6666 8 99 55555 555 0 8 8 88 1111111111111111111111111111111 9 0 333 8 55 00000000000000000 555555555 2 000000000 22 0 44 2 9 1 1 4 4444 888 1 5 888 0 999999 99 444 6 6 555555555555555555555 888888888888 55555 99 1 5 111 11 0 6 5 8 66 7 66 3 3 000 66 7 3 44444444444444 22 6 88 99999999999999 00 4 1 1 4 444444444444444 7 333333333333333333333333333333333333 0 2 0 000 5 777777
consensus : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNCACTTGCTCAATCCAACATGCTCCCTCACCTTTTAACTCGCAATCCATGAGGTTCTGGGTTTAAAATAT-TCGGGAGTACCAG--TAAATAACAATCTTTTTTCTCTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAAANCTTNCNAAAATGCAGTATTTGGTNTTTAAGAT-ATCAAAN--TGTTCCA-G-GAGAG---GTCC-CCG---TACC---CCCACCAGC----AG-GGGAT-TCNCCTGAGG-CAAGCGAATGTCGTTCCT-GCTGAGTTCTACAATGNACCAGAATGCACGATTTGGCACTAAGAAAAC----CAAAACAATTT--GGGGGANG-CCCC-AAAACACCCCCAGAATTATATTTTTCAGTTTCT---GATCTAAATTCTGATG----TATTTTATACCATTCGA-----GTA---TAANATGGAAGGACTGACAGGAC--CTGAAA--------A--A-G-CACCAGA------A--TGCACGATTTGGCACTTAGAAA-ACCAAAATTTCCCTAGGGGA-----------------GACCCC---------CCCCCA---------TG-GCGGGANGGGAGACCCC-TCCGGTACTCTTCCCCTCCTCGCAAGCCGCGTGCATTTCCCTGGCCCC-TACCAAACGGT-TTTCCTCGATATGAATTCCTTTCT----GGCT---ACGTCCCTGCTCTTTTTCTTAACAA---A-GACT-----TACA--AGAATGCAG--CATTTGNTTTTCAAAATA------TT------T------TTCCGGGGAGNCC---------CCCC-----GTA--CCAGGGAACTCAC-CCA--CCCATAT-CTCCC-CACATCT--TG-CT--CC-C-A--TTGCATGAGGTACCGGGTTTAAA--ACCCGTTG-GAAGTTC-GT----N--TTTTT-AAT-AC-ATC-------TT-----TT--TTTTTTTT-TCTTAATAAAAA-----CGT-------TTAAAA-GTCACAAAATATTGG-------AGT---------CCATA------------TTTTA-TCATA-AAA-T-CTCCC-----GATAATGCAGTAT
Reference ( family-179 ) : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNCACCCGCTCAATCCA-CAT-CCCCCCCA---TATCGCTCCCATTGCATGAGGTACCGGNTTTAAAACNTGTTGNAAGTTCGGGTTTAAAT-AC-ATCTTTTTTTTCTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAGAACCTTACAAGAATGCAGCATTTGGTTTTCAAGAT-ATTAAAC--TGTTCCG-G-GAGAG---GTCC-CCG---TACC---NCCACCAGC----AG-GGGAT-TCNCCTGANG-CAA-CGAATGTCGTTCCT-GCTGAGCTCTACGATGNACCAGAATGCACGATTTGGCACTAAGAAAAC----CAAAATAATTT--GGGGGAGG-CCCC-AAAACACCCCCAGAATTATATTTTTCAGTTTCT---GATCTAAATTCTGATG----TATTTTATACCATTCGA-----GTA---TAANATGGAAGGACTGACAGGAC--CTGAAA--------A--A-G-CACCAAA------A--TGCACGATTTGGCACTTAGAAA-ACCAAAATTTCCCTAGGGGA-----------------GACCCC---------CCCCCA---------TG-GCGGGANGGGAGACCCC-TCCGGTACTCTTCCCCTCCTCGCAAGCCGCGTGCATTTCCCTGGCCCCCTACCAAACGGT-TTTCCTCGATATGAATTCCTTTCT----GGCT---ACGTCCCTGCTCTTTTTCTTAACAA---A-AACT-----TACA--AGAATGCAT--CATTTGNTTTTTAAAATA------TT------T------TTCCGGGGAGNCC---------CCCC-----GTA--CCAGGGAACTCAC-CCA--CCCATAT-CTCCC-CACATCT--TG-CT--CC-C-A--TTGCATGAGGTACCGGGTTTAAA--ACCCGTTG-GAATTCC-GT----T--TTTTT-AAT-AC-ATC-------TT-----TT--TTTTTTTT-TCTTAATAAAAA-----CGT-------TTAAAA-GTCACAAAATATTGG-------AGT---------CCATA------------TTTTA-TCATA-AAA-T-CTCCC-----GATAATGCAGTAT
gi|1 : CACTTGCTCAATCCAACATGCTCCCTCACCTTTTAACTCGCAATCCATGAGGTTCTGGGTTTAAAATAT-TCGGGAGTACCAG--TAAATAACAATCTTTTTTCTCT
gi|1 : tagttcaactgaataattgatataaccacACTTGC-TCAATCCAACATGCTCCCTCACCTTT--TAACT--CG-C-A--ATCCATGAGGTTCTGGGTTTAAAATATTCG--G-GAGTACCAG-----------TA-AATAACAATC-------TT-----TT--TTCTCTCTAACTT-GTAAAAATACAGCATACAGTTCTTAAGA--TCACAAAActaacttgtaaaaatacagcatacagttcttaagatcacaaaagtgtccaggtacccccaccagcaggggacaacccctccaagaccaaactgcagtaaatcagacaaccatattctttaatcctgaaaacttttttttctcggggtaggtccccatagccacaccagcaacagatgcgacattttgtaatttgaacaactatttcctctctcaaacttactaaaatgcagtatttgcttattaagatataaacaatattacaaagagaggtcctcgtaccaccaccagcaggggattcccctgagacaacgaatgttgttcttgctcagtttcacaattaaccagaaagcacgacttggcactaagaaaaccaaaacaatttggtgaaagccccaaaacacccccagaattatattttccagtttctgatcttaattctgatgtattttataccatttgagtattaaatcgaaggactgacaggacctgaaaaaatgcacaatttggcacaaatttccctaggggagacccctcccccatagcagaaaggaagacctttccggtactcctcccttcctctcaagccgtgtgtatttccctggccccctaccaaaccgttttcctcgatatgaattcctttctggctgaaatgtctctgctcattttcttaacaaatacttacaagaagcatttcatttttttgtcaaaatatttttccggggaggctttccataccagggaactcacccaccaatatctccccacttcatgctcccattgcgtgaggtactgggtttaaaagccattggaattctgtctttttaatatgtctttttttttttttcttaataaaaaagtttaagttgtcacaaaatattggttcaaggagtaaatgacaaccatattttatcataaaatctccctatataataatacagcatgttccagggatccc
gi|1 : tagttcaactgaataattgatataaccaccCTTGTAAAAATACAGCATACAGTTCTTAAGATCACAAAAG--TGT-CCA-G-G------------------TACC---CCCACCAGC----AG-GGGAgtgtccaggtacccccaccagcaggggacaacccctccaagaccaaactgcagtaaatcagacaaccatattctttaatcctgaaaacttttttttctcggggtaggtccccatagccacaccagcaacagatgcgacattttgtaatttgaacaactatttcctctctcaaacttactaaaatgcagtatttgcttattaagatataaacaatattacaaagagaggtcctcgtaccaccaccagcaggggattcccctgagacaacgaatgttgttcttgctcagtttcacaattaaccagaaagcacgacttggcactaagaaaaccaaaacaatttggtgaaagccccaaaacacccccagaattatattttccagtttctgatcttaattctgatgtattttataccatttgagtattaaatcgaaggactgacaggacctgaaaaaatgcacaatttggcacaaatttccctaggggagacccctcccccatagcagaaaggaagacctttccggtactcctcccttcctctcaagccgtgtgtatttccctggccccctaccaaaccgttttcctcgatatgaattcctttctggctgaaatgtctctgctcattttcttaacaaatacttacaagaagcatttcatttttttgtcaaaatatttttccggggaggctttccataccagggaactcacccaccaatatctccccacttcatgctcccattgcgtgaggtactgggtttaaaagccattggaattctgtctttttaatatgtctttttttttttttcttaataaaaaagtttaagttgtcacaaaatattggttcaaggagtaaatgacaaccatattttatcataaaatctccctatataataatacagcatgttccagggatccc
gi|1 : tagttcaactgaataattgatataaccaccacttgctcaatccaacatgctccctcaccttttaactcgcaatccatgaggttctgggtttaaaatattcgggagtaccagtaaataacaatcttttttctctctaaAAACTTACTAAAATGCAGTATTTGCTTATTAAGAT-AT-AAACAATATTACA-AAGAGAG---GTCC-TCG---TACC---ACCACCAGC----AG-GGGAT-TCCCCTGAGA-CAA-CGAATGTTGTTCTT-GCTCAGTTTCACAATTAACCAGAAAGCACGACTTGGCACTAAGAAAAC----CAAAACAATTT--GGTGAAAG-CCCC-AAAACACCCCCAGAATTATATTTTCCAGTTTCT---GATCTTAATTCTGATG----TATTTTATACCATTTGA-----GTA---TTAAATCGAAGGACTGACAGGAC--CTGAAA--------A--A----------------A--TGCACAATTTGGCAC------------AAATTTCCCTAGGGGA-----------------GACCCCT--------CCCCCA---------TA-GCAGAAAGGAAGACCTT-TCCGGTACTCCTCCCTTCCTCTCAAGCCGTGTGTATTTCCCTGGCCCCCTACCAAACCGT-TTTCCTCGATATGAATTCCTTTCT----GGCTGAAATGTCTCTGCTCATTTTCTTAACAA---A-TACT-----TACA--AGAA-GCATTTCATTTTTTTGTCAAAATA------TT------T------TTCCGGGGAGGCT---------TTCC-----ATA--CCAGGGAACTCAC-CCA--CCAATAT-CTCCC-CACTTCA--TG-CT--CC-C-A--TTGCGTGAGGTACTGGGTTTAAA--AGCCATTG-GAATTCT-GT----C--TTTTT-AAT-AT-GTC-------TT-----TT--TTTTTTTT-TCTTAATAAAAA-----AGT-------TTAAGTTGTCACAAAATATTGGTTCAAGGAGTAAATGACAACCATA------------TTTTA-TCATA-AAA-T-CTCCCTATATAATAATACAGCATcaacccctccaagaccaaactgcagtaaatcagacaaccatattctttaatcctgaaaacttttttttctcggggtaggtccccatagccacaccagcaacagatgcgacattttgtaatttgaacaactatttcctctctcaaacttactaaaatgcagtatttgcttattaagatataaacaatattacaaagagaggtcctcgtaccaccaccagcaggggattcccctgagacaacgaatgttgttcttgctcagtttcacaattaaccagaaagcacgacttggcactaagaaaaccaaaacaatttggtgaaagccccaaaacacccccagaattatattttccagtttctgatcttaattctgatgtattttataccatttgagtattaaatcgaaggactgacaggacctgaaaaaatgcacaatttggcacaaatttccctaggggagacccctcccccatagcagaaaggaagacctttccggtactcctcccttcctctcaagccgtgtgtatttccctggccccctaccaaaccgttttcctcgatatgaattcctttctggctgaaatgtctctgctcattttcttaacaaatacttacaagaagcatttcatttttttgtcaaaatatttttccggggaggctttccataccagggaactcacccaccaatatctccccacttcatgctcccattgcgtgaggtactgggtttaaaagccattggaattctgtctttttaatatgtctttttttttttttcttaataaaaaagtttaagttgtcacaaaatattggttcaaggagtaaatgacaaccatattttatcataaaatctccctatataataatacagcatgttccagggatccc
gi|10 : tagttcaactgaataattgatataaccaccacttgctcaatccaacatgctccctcaccttttaactcgcaatccatgaggttctgggtttaaaatattcgggagtaccagtaaataacaatcttttttctctctaacttgtaaaaatacagcatacagttcttaagatcacaaaagtgtccaggtacccccaccagcaggggacaacccctccaagaccaaactgcagtaaatcagacaaccatattctttaatcctgaaaacttttttttctcggggtaggtccccatagccacaccagcaacagatgcgacattttgtaatttgaacaactatttcctctctcA------A--TGCATGGTTTGGTACTTA-AAA-ATGAAAATTTTCA-AGGGGA-----------------GACCCCAC-------CCCCTA---------TT-GCGGGATGGGAGATCCC-TATGGAACTCCTCCTCTCCTCATAAGCCACGTGCATTGCCCTGGCCCCTTAC-AATCAGTATTTTCACAATATGAATTCCTTTCT----GGCT---ACTTCCGTACCCTTTTTCTTAACAA---A-GACT-----TACA--AGAATGCAG--CATTTGTTTTTCAAAATATTAAACTT------T------TTCCAGGGAGCCC---------CCgttccagggatccc
gi|11 : TTTAAATTA------TT------T------T----GGGGGTTG---------CCCC-----GTT--CC-------TC---CAA--ATCATCT-CTCCC----ATCCGCTA-TT--TC-C-ACGTTGAATGGGGTATTGGCTTTAAA--ACCCGGCG-AAATTTC-GC----A--TCTT---AT-AC-ATC-------TTACAACTT--TTTTTTTT-TCTTAATGGTTA-----CAT-------TTAAAA-GTCACAAAATATTGG-------AGT---------AAATAACAACTTTTTGTTTTTATTCA-A-AAA-TACTC--------AGAATGTAGTATacc
gi|12 : taaaataAAAAA-ACTACA--TTTCCTAGGTAA-----------------GACCCCA--------CCCCCACACCCCTTATC-GCAGGAAGGGAGACCCC-TTCGGTACTTTTCCCTTCCTGGTAAGCCGCGTGCATTGCCCTGACCCC-TAACAAACGGT-TTTCCTCAATAGGAATTCCTTTCT----AGCT---ACGTCTCTGTCTTTTTTCTTAACAC---A-GACT------------AAATAAAA--CATTTGttggtattatcaaattttc
gi|13 : GGGGAGATA---------CCC------GTA--CCCGACAACCCCCGCCA--CACACAC-TTCCT-CAC-----------------------GCATAAGATACCGGGTTTGAA--ACCCGATG-GAGGGTC-GT----C--TCTAT-AAT-A--GTT-------TA-----TT--TCTGTTTT-t
gi|14 : TGCTG----CATTTAATACCATTGCA-----GTACAATAACAATGTAGGGCTAACAGCACAACTGAAACGGCTGTTATTA-G-CACGAGATTCGGCACTTGTACGAATCGGCACTTAAAAACATTAAA---TACTTAGTGAA-----------------GACCCC---------CCACCA---------gtgtgtatacgtgtgctgtattgtacgtgtgcgtgtaaatatcaaacgtttgtagtaaccgtgtttcccataaaagactta
gi|15 : TGCTG----CATTTAATACCATTGCA-----GTACAATAACAATGTAGGGCTAACAGCACAACTGAAACGGCTGTTATTA-G-CACGAGATTCGGCACTTGTACGAATCGGCACTTAAAAACATTAAA---TACTTAGTGAA-----------------GACCCC---------CCACCA---------acctgcaaccccaccc
gi|17 : CC-AACATCT--TG-CT--CC-CCA--GTGCATTAGGTATCAAGTATAAA---TCAAATG-TAAG-CT-GT----TCGTTTTT-AAT-AC-ATCCCATAGGTT-----CTAGTGTTATTT-T------------------T-------TTGAAA-ATTACAAAATATTGG-------Aacctgcaaccccaccc
gi|18 : ACGTCT--CGGCT--CC-T-A--GTGCATGCGGTATCGGGTTTAAA--ACAAG--GCGAACT----T----T--TCTTA-AAT-AA-ATC-------TT-----TT--TTTTTCT----TTAA-AAAAA-----TGT-------TTAAA
gi|19 : ccatcaccacgtT-TTCCC-GTCGCCT--TG-CT--TTTC-A--TTGCATGAGGTAACGGATCTGAT--ACCCAATA-GAGGCTC-AC----T--TTTTTAAAT-AT-ATA-------TT-----TT--
gi|2 : cgacatccccttagaacTTCGA-G-GAGAG---GTTG-CCG---TACC---CAAATCAGT----AG-GGGAT-TCACCTGAGGGCAA-CGAATGTTGTTCCT-GTTGGGTTCTATAATAAACCAGAATGCACGATTTGTCACGAAGATAAC------AAACAA----------AAA------AAAACACCCCTAGAATTATATTTTTCAGCTTCT---CATCAAAGTTCTGATG----TATTTTATACATTTCGA-----GTA---TAAGATGGAAGGAATGACAGGAC--CTGAAA--------A--ATG-CACCAAA------A--TGCACGATTTTGCACTTAGAAA-AACAAAATTT-CCTA-TGGA-----------------GA-CCC---------CCTCCA---------TG-GCAAAAAGGGAGACCGC-TTCGGTACTCTTTCCCTCCTCGAAAGCCGCGTGCATTT-CCTGGCCCC--AGCAAACGGT-TTTCCTCGATATAAATTCCTTTCT----GGCT---ACGTCAGAA-----------AACAA---A-ACCT-----TACA--AGAATGCAG--CATTTGATTTTCGAAATGTTAAACTT------T------TTTCGGAGAGG-C---------CCCC-----GCA--CCA-------TA---CA--CCCATAT--GCCC-CGCCTCT--TG--TAACC-C-A--TTGCTTAAGGTACCGGGTTTCAA--ACCCGTTG-AGAGTTC-AT----A--TATTT-AAT-AT-ATC--------------TT--ATATTTTT-TCTTAAAAAAAA-----CAT-------TTAAAA-GTC
gi|20 : attGCAGTATTTAGTGTTTAAGAT-ATCAAAA--TGTCCCACA-GCCAG---CTTC-CTG-----CC---CCCA-TAGC----AGCGGGA
gi|21 : CCTCTAACAAACTGT-TTTGTCTGTTATGATTTCCTTTTT----GACT---ACGTCCCTGCacccc
gi|3 : tgtctctaACTAAA------A--TGCACGCTTTGGCACTAAGAGG-ACCAAAATTTCAC-AGGGG----------------------CT---------CCACTA---------TG-ACGAGATTGGAGACCCC-TCCAGTACTCTTCACTTTCTCGCAAGCCACGTGCTTTTCGCTGGCCCC-TACCAAACGTT-TTATTTCGATATGAATTCCTTTCT----TGAT---ACATCCCTGCTCTTTTTCTTAACTA---A-AACA-----AAAATTAGAATGCAT--CGTTTGGTTTTTAAAACA------TT------TAACTTTTTCCGGGGAGCCC---------CCTCCCCACATA--CCAGGGAGCTCAA-CCT--CCCATAC-CTCCC-CACATCT--TG-CT--CC-C-A--TTGCATGAGGTACCGGATTTAAA--ACCCGTTG-GAAGTTC-AT----T--TTTTT-AAT-AC-A-----------------------------TCTTAATAAAAA-----TAT-------TTAAAA-GTCACAAAATATTGG-------AGT-----------ATA------------TTTTA-TCATA-AAA-T-CTCCC-----GATAATGCAGTAT
gi|3 : AAAATCTCCCGATAATGCAGTATTTGGTATT-AAGAT-ATCAAAC--TGTTCC-----AGAGACCATCCACCGCTTTACCCCATCCACCAGCGGGAAG-GGTATATTTCCTGATA-CAttggtattaagatatcaaactgttccagagaccatccaccgctttaccccatccaccagcgggaagggtatatttcctgatacattctcttctcatgtcggctccgaaataacttaaacgctcctactacgcccatgaagttgtgttatat
gi|4 : actaaaatgcacgctttggcactaagaggaccaaaatttcacaggggctccactatgacgagattggagacccctccagtactcttcactttctcgcaagccacgtgcttttcgctggcccctaccaaacgttttatttcgatatgaattcctttcttgatacatccctgctctttttcttaactaaaacaaaaattagaatgcatcgtttggtttttaaaacatttaactttttccggggagccccctccccacataccagggagctcaacctcccatacctccccacatcttgctcccattgcatgaggtaccggatttaaaacccgttggaagttcatttttttaatacatcttaataaaaatatttaaaagtcacaaaatattggagtatattttatcatG-CAA-CGAATGTCGTTCCT-GCTGGACTCTACAATGAACCAGAATGCACGATTTGGCACTAATAAAACAAAACAAAAAAAT----AGGGGATGTCCCC-AAAACACCCCCAAAATTACAATTTTCAGTTTCT---GATCTAAATTCTGATGGATGTATCTAATACCACTAGAATAGAGTA---TGAAATGAAAGGAATGACAGGAA--CGGAAA--------A--A-GGCATCCGA------A--TATCCGTTTTGAAACCTAGGAA-ACCAA----CTCCTCGGGGA-----------------GACACC---------AACCTA---------TG-GCGGGATGGGAGACCCAGTCCGGTACTCTTCCCCTCCTCGCAAGCCGCGTGCATTTCCCTGGTCCC-TACCAAACGGT-ATTCCTCGATGTGAACTCCTTTTTCAGTGGCT---ATGTCCCTACTCTGTTTCTTTACAA---A-AACT-----TTCA--AGAATGCAG--CATTCG--------AATT------TT------T------TTTCGGGGAAACC---------CC-C-----GTA--CCAGGGAATTCAC-CCA--CTCATAT-CCACC-CACATAT--TG-CT--CC-C-A--TTGCATGAGGTACCGGGTTTAAA--ACCCATTG-TAAGTTC-G-----G--GTTTA-AAT-AC-ATC-------TT-----TT--TTTTCTttctcttctcatgtcggctccgaaataacttaaacgctcctactacgcccatgaagttgtgttatat
gi|5 : GCTCTATAATGAACCAAAATACACTTTTTGGCACTAAAAAA------CAAAGTAATTT--GGGGGAGG-CCCCCAAAACATCCCCAGAATTATATTTTTCATTTTTTTTTG-TCGAAATTCTGATG----AATTTTATACCATTCTA-----ATA---TAATATGAAAGGACTGACAGGAC--CTGGAA--------A--ATG-CACCAAA------A--TGCACGATTTGGCACTTAAAAA-CCCAAAATTTCC-TAGGGAATACCCCCCCCCCCCCCCGACCCCACCCCACACCCTCCA---------TAAGTAGGAAAGGAGACTC--TACAGTACTCTTCCCCTCCTCGCAAGACGTGTGCATTTCCCTGACCCC-TACCAAACGGT-TTTGCTTGATATGAAATCCTTTCT----GGCT---ACGTCCCTGCTCTTTAACTTAACAACTCATGACTTATCGTATA--AGAATGCAG--CATTTGCTGTT-------------TT------T------TTCCGGGGAGG-C---------CCCA-----GTA--TCAGGCAACTCAT-CCA--CCCATAT-CTCCC-C-CATCT--TG-CT--CC-A-A--CTGCATGAGCTACCGGTTTTAAA--ACCTGTTG-GAA
gi|6 : gTTTCT---GATCTAAATACTGATG----TATTTTATACCATTCGA-----GTA---AAACATGGAAGGACTGACAGGAC--CTGAAA--------A--A-GGCACCAAA------A--CACACGACTTGACACTTAGAAA-ACCAAAATGTCA-TAGGAAA-----------------GACCTA---------C----A---------TG-GCGGGACGGGAAACCCT-TCCGGTACTC-----------GCAAGCCTCTTGCATTTCCTTGGCACC-TACCAAACTAT-TTCCCTTGATATGAATTCCTTTCT----GACT---ACGTCC-TGCTCTTTATTTTAACAA---A-ATCT-----TACA--ATAATGCGA--CATTTGGTTTTCAAAATA------TTAAACTTT------TTCCGAAGAGTCCTTTCCTTTACCCC-----GTATACCAGGGAACTCAC-CCA--CCCATAT-CTCCC-CACATCT--TG-CT--TC-C-A--TTGCATGAGGTACCTGATTT-AA--ACCCGTTC-GACGTTC-GTTTGGT--TTTTT-AAT-AC-ATC-------TTA----TT--TTTTTTAT-TC---ATAAAAA-----GCTA------TTAAGA-GTCACAAAATATTGG--------TC---------CCATA------------TTCAA-TCATATAGACT-CTCCC-----gtt
gi|7 : acAATG--GTTCTTAGCT----TCTACCATATACCAGAATGCACGATTTCACATAAAGAAAAT----CAAAAT--TTTCAGGGGGATG-TCCC-CAAACATCTATAAAATTCTATTTTTCAGATTCT---GGTCTTAAT--TGATG----TAATTTATACAATTCCA-----GTA---TAAAAAGGTAGGGCTGACTGCAC--CTGGAA--------A--
gi|8 : tatgaaacacaaccaagaaattgcttccctgaagaaaaatcatccagagagagcattttttggtagtgagggcatagaatgtcattcatgttgggttctaccagtgacttaataaaatggatatgccATGTCATTACT-GCTAAGTTCTACGGTGCAACAGAATACACAATTTGGCACTTAGAAAAC----CAAAccagtagtacagtt
gi|8 : taaatgatttaaatatgaatttaacactccgaggaaacaattttgggtagtgtaagtgacttTGAGG-AAAGCGAATGTCATTCTT-GCTGAATACTACAAATCACTAGAATGCACGATATAGCACTtatctccaaataaaatacctcaaatatatacgtcaaattccactaaagtggctaccctgaaaaatgtgaaggaacattttgttgtaatgaggaaagcgaatgtcattcttgctgaatactacaaatcactagaatgcacgatatagcactttt
gi|9 : taaatgatttaaatatgaatttaacactccgaggaaacaattttgggtagtgtaagtgacttatgtcattactgctaagttctacggtgcaacagaatacacaatttggcacttagaaaaccaaatatctccaaataaaatacctcaaatatatacgtcaaattccactaaagtggctaccctgaaaaatgtgaaggaacattttgttgtaaATGTCATTACT-GCTAAGTTCTACGGTGCAACAGAATACACAATTTGGCACTTAGAAAAC----CAAAttt
gi|9 : taaatgatttaaatatgaatttaacactccgaggaaacaattttgggtagtgtaagtgacttTGAGG-AAAGCGAATGTCATTCTT-GCTGAATACTACAAATCACTAGAATGCACGATATAGCACTtatctccaaataaaatacctcaaatatatacgtcaaattccactaaagtggctaccctgaaaaatgtgaaggaacattttgttgtaatgaggaaagcgaatgtcattcttgctgaatactacaaatcactagaatgcacgatatagcactttt
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|16 ): TTTTTTTCTTGATATTACGTAAAAACGACACAAAATATCTGAGCAAATAGCAAGCATTCTCCATAAAACGTATTAAAATGCAGCATTTTGATTTTATCATAATTTTTCCCGTAACTCCACCTTCAGTGGACACCCTCTCT
Alignments
lowQualScore : 1 1 222222222222222222222 111 1111 1 111 1111 11111 11 111 1111 11111 111 11 5555555555555555555555555555555 11111 33333333333333333333333333333333 111111111 11111 5555555 222222222222 111111111 11111 11111111111111 333333333333333 999999999999999999999999999999999999 1 1 111 222222
lowQualScore : 1 1 1 22 3 0 2 0 1 1 000000000000000000000 111 1 4444 6 0 1 77 8 555 4 1 22 2222 22 88888 1 11 8 111 1 3 0000 0 33 22222 777 1 0 0 33 6666666666666666666666666666666 3 8 11111 44 00000000000000000000000000000000 2 666666666 55 1 88 0 4 1 0 4 9999 777 777 99 11111 66 66 4 5 66 1 4444444 000000000000 222222222 0 2 888 66 4 3 0 3 44 6 44 3 3 555 1 555 55 22222 66 3 44 99999999999999 55 4 0 3 3 222222222222222 5 333333333333333333333333333333333333 0 3 0 111 2 888888
lowQualScore : . . . .. . . . . . . ..................... ... . .... . . . .. . ... . . .. .... .. ..... . .. . ... . . .... . .. ..... ... . . . .. ............................... . . ..... .. ................................ . ......... .. . .. . . . . . .... ... ... .. ..... .. .. . . .. . ....... ............ ......... . . ... .. . . . . .. . .. . . ... . ... .. ..... .. . .. .............. .. . . . . ............... . .................................... . . . ... . ......
lowQualScore : 0 0 0 22 2 0 5 0 0 7 333333333333333333333 777 0 2222 7 0 0 44 8 666 4 9 99 1111 22 00000 0 22 0 777 7 5 6666 8 99 55555 555 0 8 8 88 6666666666666666666666666666666 9 0 66666 00 00000000000000000000000000000000 3 000000000 22 0 44 2 4 1 1 4 4444 888 888 99 11111 11 11 4 9 11 9 8888888 888888888888 888888888 1 5 111 11 0 6 5 8 66 7 66 3 3 000 5 888 00 33333 00 6 88 99999999999999 00 4 1 1 4 444444444444444 7 333333333333333333333333333333333333 0 2 0 000 5 777777
consensus : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNCACTTGCTCAATCCAACATGCTCCCTCACCTTTTAACTCGCAATCCATGAGGTTCTGGGTTTAAAATATTCGGGAGTACCAGTAAATAACAATCTTTTTTCTCTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAAAACTTNCNAAAATGCAGTATTTGGTNTTTAAGAT-ATNAA-AATGTTCCA-G-GAG-A-GGTCC-CCG---TACCC---CCACCAGC----AG-GGGAT-TCNCCTGAGG-CAAGCGA---ATGTCGTTCCT-GCTGAGTTCTACAATGNACCAGAATGCACGATTTGGCACTAAGAAAAC----CAAAACAATTT--GGGGGANG-CCCC-AAAACACCCCCAGAATTATATTTTTCAGTTTCT---GATCTAAATTCTGATG----TATTTTATACCATTCGA-----GT---ATAANATGGAAGGACTGACAGGAC--CTGAAA--------A--A-G-CACCAGA------A--TGCACGATTTGGCACTTAGAAA-ACCAAAATTTCCCTAGGGGA-----------------GACCCC---------CCCCCA---------TG-GCGGGANGGGAGACCCC-TCCGGTACTCTTCCCCTCCTCGCAAGCCGCGTGCATTTCCCTGGCCCC-TACCAAACGGT-TTTCCTCGATATGAATTCCTTTCT----GGCT---ACGTCCCTGCTCTTTTTCTTAACAA---A-GACT-----TACA--AGAATGCAG--CA-TTTGNTTT--TCAAAATATT-AACTTTTTCCGGGGAGNCC---------CCC-----CG--TACCAGGGAACTCAC-CCA--CCCATAT-CTCCC-CACATCT--TG-CT--CC-C-A--TTGCATGAGGTACCGGGTTTAAAACCCGTTGGAAG---TTC--GT----NTTTTT-AAT-AC-ATC-------TT-----TT--TTTTTTTT-TCTTAATAAAAA-----CGT-------TTAAAA-GTCACAAAATATTGG-------AGT---------CCATA------------TTTTA-TCATA-AAA-T-CTCCC-----GATAATGCAGTAT
Reference ( family-179 ) : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNCACTTGCTCAATCCAACATGCTCCCTCACCTTTTAACTCGCAATCCATGAGGTTCTGGGTTTAAAATATTCGGGAGTACCAGTAAATAACAATCTTTTTTCTCTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAAANCTTNCNAAAATGCAGTATTTGGTNTTTAAGAT-ATCAA-ANTGTTCCA-G-GAG-A-GGTCC-CCG---TACCC---CCACCAGC----AG-GGGAT-TCNCCTGAGG-CAAGCGA---ATGTCGTTCCT-GCTGAGTTCTACAATGNACCAGAATGCACGATTTGGCACTAAGAAAAC----CAAAACAATTT--GGGGGANG-CCCC-AAAACACCCCCAGAATTATATTTTTCAGTTTCT---GATCTAAATTCTGATG----TATTTTATACCATTCGA-----GT---ATAANATGGAAGGACTGACAGGAC--CTGAAA--------A--A-G-CACCAGA------A--TGCACGATTTGGCACTTAGAAA-ACCAAAATTTCCCTAGGGGA-----------------GACCCC---------CCCCCA---------TG-GCGGGANGGGAGACCCC-TCCGGTACTCTTCCCCTCCTCGCAAGCCGCGTGCATTTCCCTGGCCCC-TACCAAACGGT-TTTCCTCGATATGAATTCCTTTCT----GGCT---ACGTCCCTGCTCTTTTTCTTAACAA---A-GACT-----TACA--AGAATGCAG--CA-TTTGNTTT--TCAAAATA------TTTTTCCGGGGAGNCC---------CCC-----CG--TACCAGGGAACTCAC-CCA--CCCATAT-CTCCC-CACATCT--TG-CT--CC-C-A--TTGCATGAGGTACCGGGTTTAAAACCCGTTGGAAG---TTC--GT----NTTTTT-AAT-AC-ATC-------TT-----TT--TTTTTTTT-TCTTAATAAAAA-----CGT-------TTAAAA-GTCACAAAATATTGG-------AGT---------CCATA------------TTTTA-TCATA-AAA-T-CTCCC-----GATAATGCAGTAT
gi|1 : CACTTGCTCAATCCAACATGCTCCCTCACCTTTTAACTCGCAATCCATGAGGTTCTGGGTTTAAAATATTCGGGAGTACCAGTAAATAACAATCTTTTTTCTCT
gi|1 : tagttcaactgaataattgatataaccacACTTGC-TCAATCCAACATGCTCCCTCACCTTT--TAACT--CG-C-A--ATCCATGAGGTTCTGGGTTTAAAATAT-TCGGGAG---TACCAGT----A------AATAACAATC-------TT-----TT--TTCTCTCTAACTT-GTAAAAATACAGCATACAGTTCTTAAGA--TCACAAAActaacttgtaaaaatacagcatacagttcttaagatcacaaaagtgtccaggtacccccaccagcaggggacaacccctccaagaccaaactgcagtaaatcagacaaccatattctttaatcctgaaaacttttttttctcggggtaggtccccatagccacaccagcaacagatgcgacattttgtaatttgaacaactatttcctctctcaaacttactaaaatgcagtatttgcttattaagatataaacaatattacaaagagaggtcctcgtaccaccaccagcaggggattcccctgagacaacgaatgttgttcttgctcagtttcacaattaaccagaaagcacgacttggcactaagaaaaccaaaacaatttggtgaaagccccaaaacacccccagaattatattttccagtttctgatcttaattctgatgtattttataccatttgagtattaaatcgaaggactgacaggacctgaaaaaatgcacaatttggcacaaatttccctaggggagacccctcccccatagcagaaaggaagacctttccggtactcctcccttcctctcaagccgtgtgtatttccctggccccctaccaaaccgttttcctcgatatgaattcctttctggctgaaatgtctctgctcattttcttaacaaatacttacaagaagcatttcatttttttgtcaaaatatttttccggggaggctttccataccagggaactcacccaccaatatctccccacttcatgctcccattgcgtgaggtactgggtttaaaagccattggaattctgtctttttaatatgtctttttttttttttcttaataaaaaagtttaagttgtcacaaaatattggttcaaggagtaaatgacaaccatattttatcataaaatctccctatataataatacagcatgttccagggatccc
gi|1 : tagttcaactgaataattgatataaccaccAACTTGTAAAAATACAGCATACAGTTCTTAAGATCACAAA-AGTGT-CCA-G-G-----------------TACCC---CCACCAGC----AG-GGGAgtgtccaggtacccccaccagcaggggacaacccctccaagaccaaactgcagtaaatcagacaaccatattctttaatcctgaaaacttttttttctcggggtaggtccccatagccacaccagcaacagatgcgacattttgtaatttgaacaactatttcctctctcaaacttactaaaatgcagtatttgcttattaagatataaacaatattacaaagagaggtcctcgtaccaccaccagcaggggattcccctgagacaacgaatgttgttcttgctcagtttcacaattaaccagaaagcacgacttggcactaagaaaaccaaaacaatttggtgaaagccccaaaacacccccagaattatattttccagtttctgatcttaattctgatgtattttataccatttgagtattaaatcgaaggactgacaggacctgaaaaaatgcacaatttggcacaaatttccctaggggagacccctcccccatagcagaaaggaagacctttccggtactcctcccttcctctcaagccgtgtgtatttccctggccccctaccaaaccgttttcctcgatatgaattcctttctggctgaaatgtctctgctcattttcttaacaaatacttacaagaagcatttcatttttttgtcaaaatatttttccggggaggctttccataccagggaactcacccaccaatatctccccacttcatgctcccattgcgtgaggtactgggtttaaaagccattggaattctgtctttttaatatgtctttttttttttttcttaataaaaaagtttaagttgtcacaaaatattggttcaaggagtaaatgacaaccatattttatcataaaatctccctatataataatacagcatgttccagggatccc
gi|1 : tagttcaactgaataattgatataaccaccacttgctcaatccaacatgctccctcaccttttaactcgcaatccatgaggttctgggtttaaaatattcgggagtaccagtaaataacaatcttttttctctctTTCTC-G-GGGTA-GGTCC-CCA---TAGCC---ACACCAGC----AA-CAGAT-caacccctccaagaccaaactgcagtaaatcagacaaccatattctttaatcctgaaaacttttttttctcggggtaggtccccatagccacaccagcaacagatgcgacattttgtaatttgaacaactatttcctctctcaaacttactaaaatgcagtatttgcttattaagatataaacaatattacaaagagaggtcctcgtaccaccaccagcaggggattcccctgagacaacgaatgttgttcttgctcagtttcacaattaaccagaaagcacgacttggcactaagaaaaccaaaacaatttggtgaaagccccaaaacacccccagaattatattttccagtttctgatcttaattctgatgtattttataccatttgagtattaaatcgaaggactgacaggacctgaaaaaatgcacaatttggcacaaatttccctaggggagacccctcccccatagcagaaaggaagacctttccggtactcctcccttcctctcaagccgtgtgtatttccctggccccctaccaaaccgttttcctcgatatgaattcctttctggctgaaatgtctctgctcattttcttaacaaatacttacaagaagcatttcatttttttgtcaaaatatttttccggggaggctttccataccagggaactcacccaccaatatctccccacttcatgctcccattgcgtgaggtactgggtttaaaagccattggaattctgtctttttaatatgtctttttttttttttcttaataaaaaagtttaagttgtcacaaaatattggttcaaggagtaaatgacaaccatattttatcataaaatctccctatataataatacagcatgttccagggatccc
gi|1 : tagttcaactgaataattgatataaccaccacttgctcaatccaacatgctccctcaccttttaactcgcaatccatgaggttctgggtttaaaatattcgggagtaccagtaaataacaatcttttttctctctaacttgtaaaaatacagcatacagttcttaagatcacaaaagtgtccaggtacccccaccagcaggggacaacccctccaagaccaaactgcagtaaatcagacaaccatattctttaatcctgaaaacttttttAAACTTACTAAAATGCAGTATTTGCTTATTAAGAT-ATAAACAATATTACA-AAGAG-A-GGTCC-TCG---TACCA---CCACCAGC----AG-GGGAT-TCCCCTGAGA-CAA-CGA---ATGTTGTTCTT-GCTCAGTTTCACAATTAACCAGAAAGCACGACTTGGCACTAAGAAAAC----CAAAACAATTT--GGTGAAAG-CCCC-AAAACACCCCCAGAATTATATTTTCCAGTTTCT---GATCTTAATTCTGATG----TATTTTATACCATTTGA-----GT---ATTAAATCGAAGGACTGACAGGAC--CTGAAA--------A--A----------------A--TGCACAATTTGGCAC------------AAATTTCCCTAGGGGA-----------------GACCCCT--------CCCCCA---------TA-GCAGAAAGGAAGACCTT-TCCGGTACTCCTCCCTTCCTCTCAAGCCGTGTGTATTTCCCTGGCCCCCTACCAAACCGT-TTTCCTCGATATGAATTCCTTTCT----GGCTGAAATGTCTCTGCTCATTTTCTTAACAA---A-TACT-----TACA--AGAA-GCATTTCA-TTTTTTTG--TCAAAATA------TTTTTCCGGGGAGGCT---------TTC-----CA--TACCAGGGAACTCAC-CCA--CCAATAT-CTCCC-CACTTCA--TG-CT--CC-C-A--TTGCGTGAGGTACTGGGTTTAAAAGCCATTGGAAT---TCT--GT----CTTTTT-AAT-AT-GTC-------TT-----TT--TTTTTTTT-TCTTAATAAAAA-----AGT-------TTAAGTTGTCACAAAATATTGGTTCAAGGAGTAAATGACAACCATA------------TTTTA-TCATA-AAA-T-CTCCCTATATAATAATACAGCATgcgacattttgtaatttgaacaactatttcctctctcaaacttactaaaatgcagtatttgcttattaagatataaacaatattacaaagagaggtcctcgtaccaccaccagcaggggattcccctgagacaacgaatgttgttcttgctcagtttcacaattaaccagaaagcacgacttggcactaagaaaaccaaaacaatttggtgaaagccccaaaacacccccagaattatattttccagtttctgatcttaattctgatgtattttataccatttgagtattaaatcgaaggactgacaggacctgaaaaaatgcacaatttggcacaaatttccctaggggagacccctcccccatagcagaaaggaagacctttccggtactcctcccttcctctcaagccgtgtgtatttccctggccccctaccaaaccgttttcctcgatatgaattcctttctggctgaaatgtctctgctcattttcttaacaaatacttacaagaagcatttcatttttttgtcaaaatatttttccggggaggctttccataccagggaactcacccaccaatatctccccacttcatgctcccattgcgtgaggtactgggtttaaaagccattggaattctgtctttttaatatgtctttttttttttttcttaataaaaaagtttaagttgtcacaaaatattggttcaaggagtaaatgacaaccatattttatcataaaatctccctatataataatacagcatgttccagggatccc
gi|10 : tagttcaactgaataattgatataaccaccacttgctcaatccaacatgctccctcaccttttaactcgcaatccatgaggttctgggtttaaaatattcgggagtaccagtaaataacaatcttttttctctctaacttgtaaaaatacagcatacagttcttaagatcacaaaagtgtccaggtacccccaccagcaggggacaacccctccaagaccaaactgcagtaaatcagacaaccatattctttaatcctgaaaacttttttttctcggggtaggtccccatagccacaccagcaacagatgcgacattttgtaatttgaacaactatttcctctctcA------A--TGCATGGTTTGGTACTTA-AAA-ATGAAAATTTTCA-AGGGGA-----------------GACCCCAC-------CCCCTA---------TT-GCGGGATGGGAGATCCC-TATGGAACTCCTCCTCTCCTCATAAGCCACGTGCATTGCCCTGGCCCC-TTACAATCAGTATTTTCACAATATGAATTCCTTTCT----GGCT---ACTTCCGTACCCTTTTTCTTAACAA---A-GACT-----TACA--AGAATGCAG--CA-TTTGTTTT--TCAAAATATTAAACTTTTTCCAGGGAGCCC---------CCgttccagggatccc
gi|11 : T--TTAAATTA------TTTT----GGGGGTTG---------CCC-----CG--TTCC-------TC---CAA--ATCATCT-CTCCC----ATCCGCTA-TT--TC-C-ACGTTGAATGGGGTATTGGCTTTAAAACCCGGCGAAAT---TTC--GC----ATCTT---AT-AC-ATC-------TTACAACTT--TTTTTTTT-TCTTAATGGTTA-----CAT-------TTAAAA-GTCACAAAATATTGG-------AGT---------AAATAACAACTTTTTGTTTTTATTCA-A-AAA-TACTC--------AGAATGTAGTATacc
gi|12 : taaaataAAAAA-ACTACA--TTTCCTAGGTAA-----------------GACCCCA--------CCCCCACACCCCTTATC-GCAGGAAGGGAGACCCC-TTCGGTACTTTTCCCTTCCTGGTAAGCCGCGTGCATTGCCCTGACCCC-TAACAAACGGT-TTTCCTCAATAGGAATTCCTTTCT----AGCT---ACGTCTCTGTCTTTTTTCTTAACAC---A-GACT------------AAATAAAA--CA-TTTGttggtattatcaaattttc
gi|13 : GGGGAGATA---------CCC------G--TACCCGACAACCCCCGCCA--CACACAC-TTCCT-CAC-----------------------GCATAAGATACCGGGTTTGAAACCCGATGGAGG---GTC--GT----CTCTAT-AAT-A--GTT-------TA-----TT--TCTGTTTT-t
gi|14 : TGCTG----CATTTAATACCATTGCA-----GTACAATAACAATGTAGGGCTAACAGCACAACTGAAACGGCTGTTATTA-G-CACGAGATTCGGCACTTGTACGAATCGGCACTTAAAAACATTAAA---TACTTAGTGAA-----------------GACCCC---------CCACCA---------gtgtgtatacgtgtgctgtattgtacgtgtgcgtgtaaatatcaaacgtttgtagtaaccgtgtttcccataaaagactta
gi|15 : TGCTG----CATTTAATACCATTGCA-----GTACAATAACAATGTAGGGCTAACAGCACAACTGAAACGGCTGTTATTA-G-CACGAGATTCGGCACTTGTACGAATCGGCACTTAAAAACATTAAA---TACTTAGTGAA-----------------GACCCC---------CCACCA---------acctgcaaccccaccc
gi|16 : TTCTCCATAA---A--ACG-----TATT--AAAATGCAG--CATTTTGATTTTATCATAAT-------TTTTCCCGacctgcaaccccaccc
gi|17 : tttttttcttgatattacgtaaaaacgacacaaaatatctgagcaaatagcaagcaCC-AACATCT--TG-CT--CC-CCA--GTGCATTAGGTATCAAGTATAAA-TCAAATGTAAGCTGTTC--GT------TTTT-AAT-AC-ATCCCATAGGTT-----CTAGTGTTATTT-T------------------T-------TTGAAA-ATTACAAAATATTGG-------Ataactccaccttcagtggacaccctctct
gi|18 : ACGTCT--CGGCT--CC-T-A--GTGCATGCGGTATCGGGTTTAAAACAAGGCGAA-------C--TT----TTCTTA-AAT-AA-ATC-------TT-----TT--TTTTTCT----TTAA-AAAAA-----TGT-------TTAAA
gi|19 : ccatcaccacgtT-TTCCC-GTCGCCT--TG-CT--TTTC-A--TTGCATGAGGTAACGGATCTGATACCCAATAGAGG---CTC--AC----TTTTTTAAAT-AT-ATA-------TT-----TT--
gi|2 : cgacatccccttagaacTTCGA-G-GAG-A-GGTTG-CCG---TACCC---AAATCAGT----AG-GGGAT-TCACCTGAGGGCAA-CGA---ATGTTGTTCCT-GTTGGGTTCTATAATAAACCAGAATGCACGATTTGTCACGAAGATAAC------AAACAA----------AAA------AAAACACCCCTAGAATTATATTTTTCAGCTTCT---CATCAAAGTTCTGATG----TATTTTATACATTTCGA-----GT---ATAAGATGGAAGGAATGACAGGAC--CTGAAA--------A--ATG-CACCAAA------A--TGCACGATTTTGCACTTAGAAA-AACAAAATTT-CCTA-TGGA-----------------GA-CCC---------CCTCCA---------TG-GCAAAAAGGGAGACCGC-TTCGGTACTCTTTCCCTCCTCGAAAGCCGCGTGCATTT-CCTGGCCCC--AGCAAACGGT-TTTCCTCGATATAAATTCCTTTCT----GGCT---ACGTCAGAA-----------AACAA---A-ACCT-----TACA--AGAATGCAG--CA-TTTGATTT--TCGAAATGTTAAACTTTTTTCGGAGAGG-C---------CCC-----CG--CACCA-------TA---CA--CCCATAT--GCCC-CGCCTCT--TG--TAACC-C-A--TTGCTTAAGGTACCGGGTTTCAAACCCGTTGAGAG---TTC--AT----ATATTT-AAT-AT-ATC--------------TT--ATATTTTT-TCTTAAAAAAAA-----CAT-------TTAAAA-GTC
gi|20 : attGCAGTATTTAGTGTTTAAGAT-ATCAA-AATGTCCCACA-GCC-A-GCTTC-CTG-----CCC---CCA-TAGC----AGCGGGA
gi|21 : TCTCTA-CCTC-TAACAAACTGT-TTTGTCTGTTATGATTTCCTTTTT----GACT---ACGTCCCTGCacccc
gi|3 : tgACTAAA------A--TGCACGCTTTGGCACTAAGAGG-ACCAAAATTTCAC-AGGGG----------------------CT---------CCACTA---------TG-ACGAGATTGGAGACCCC-TCCAGTACTCTTCACTTTCTCGCAAGCCACGTGCTTTTCGCTGGCCCC-TACCAAACGTT-TTATTTCGATATGAATTCCTTTCT----TGAT---ACATCCCTGCTCTTTTTCTTAACTA---A-AACA-----AAAATTAGAATGCAT--CG-TTTGGTTT--TTAAAACATTTAACTTTTTCCGGGGAGCCC---------CCTCCCCACA--TACCAGGGAGCTCAA-CCT--CCCATAC-CTCCC-CACATCT--TG-CT--CC-C-A--TTGCATGAGGTACCGGATTTAAAACCCGTTGGAAG---TTC--AT----TTTTTT-AAT-AC-A-----------------------------TCTTAATAAAAA-----TAT-------TTAAAA-GTCACAAAATATTGG-------AGT-----------ATA------------TTTTA-TCATA-AAA-T-CTCCC-----GATAATGCAGTAT
gi|3 : AAAATCTCCCGATAATGCAGTATTTGGTATT-AAGAT-ATCAA-ACTGTTCCA---GAG-ACCATCCACCGCTTTACCCCATCCACCAGCGGGAAG-GGTATATTTCCTGAttggtattaagatatcaaactgttccagagaccatccaccgctttaccccatccaccagcgggaagggtatatttcctgatacattctcttctcatgtcggctccgaaataacttaaacgctcctactacgcccatgaagttgtgttatat
gi|4 : actaaaatgcacgctttggcactaagaggaccaaaatttcacaggggctccactatgacgagattggagacccctccagtactcttcactttctcgcaagccacgtgcttttcgctggcccctaccaaacgttttatttcgatatgaattcctttcttgatacatccctgctctttttcttaactaaaacaaaaattagaatgcatcgtttggtttttaaaacatttaactttttccggggagccccctccccacataccagggagctcaacctcccatacctccccacatcttgctcccattgcatgaggtaccggatttaaaacccgttggaagttcatttttttaatacatcttaataaaaatatttaaaagtcacaaaatattggagtatattttatcatG-CAA-CGA---ATGTCGTTCCT-GCTGGACTCTACAATGAACCAGAATGCACGATTTGGCACTAATAAAACAAAACAAAAAAAT----AGGGGATGTCCCC-AAAACACCCCCAAAATTACAATTTTCAGTTTCT---GATCTAAATTCTGATGGATGTATCTAATACCACTAGAATAGAGT---ATGAAATGAAAGGAATGACAGGAA--CGGAAA--------A--A-GGCATCCGA------A--TATCCGTTTTGAAACCTAGGAA-ACCAA----CTCCTCGGGGA-----------------GACACC---------AACCTA---------TG-GCGGGATGGGAGACCCAGTCCGGTACTCTTCCCCTCCTCGCAAGCCGCGTGCATTTCCCTGGTCCC-TACCAAACGGT-ATTCCTCGATGTGAACTCCTTTTTCAGTGGCT---ATGTCCCTACTCTGTTTCTTTACAA---A-AACT-----TTCA--AGAATGCAG--CA-TTCG----------AATT------TTTTTTCGGGGAAACC---------CC------CG--TACCAGGGAATTCAC-CCA--CTCATAT-CCACC-CACATAT--TG-CT--CC-C-A--TTGCATGAGGTACCGGGTTTAAAACCCATTGTAAG---TTC--G-----GGTTTA-AAT-AC-ATC-------TT-----TT--TTTTCTtacattctcttctcatgtcggctccgaaataacttaaacgctcctactacgcccatgaagttgtgttatat
gi|5 : GCTCTATAATGAACCAAAATACACTTTTTGGCACTAAAAAA------CAAAGTAATTT--GGGGGAGG-CCCCCAAAACATCCCCAGAATTATATTTTTCATTTTTTTTTG-TCGAAATTCTGATG----AATTTTATACCATTCTA-----AT---ATAATATGAAAGGACTGACAGGAC--CTGGAA--------A--ATG-CACCAAA------A--TGCACGATTTGGCACTTAAAAA-CCCAAAATTTCC-TAGGGAATACCCCCCCCCCCCCCCGACCCCACCCCACACCCTCCA---------TAAGTAGGAAAGGAGACTC--TACAGTACTCTTCCCCTCCTCGCAAGACGTGTGCATTTCCCTGACCCC-TACCAAACGGT-TTTGCTTGATATGAAATCCTTTCT----GGCT---ACGTCCCTGCTCTTTAACTTAACAACTCATGACTTATCGTATA--AGAATGCAG--CA-TTTGCTGT--T-------------TTTTTCCGGGGAGG-C---------CCC-----AG--TATCAGGCAACTCAT-CCA--CCCATAT-CTCCC-C-CATCT--TG-CT--CC-A-A--CTGCATGAGCTACCGGTTTTAAAACCTGTTGGAAG---TT
gi|6 : gTTTCT---GATCTAAATACTGATG----TATTTTATACCATTCGA-----GT---AAAACATGGAAGGACTGACAGGAC--CTGAAA--------A--AGG-CACCAAA------A--CACACGACTTGACACTTAGAAA-ACCAAAATGT-CATAGGAAA-----------------GA-------------CCTACA---------TG-GCGGGACGGGAAACCCT-TCCGGTA-----------CTCGCAAGCCTCTTGCATTTCCTTGGCACC-TACCAAACTAT-TTCCCTTGATATGAATTCCTTTCT----GACT---ACGT-CCTGCTCTTTATTTTAACAA---A-ATCT-----TACA--ATAATGCGA--CA-TTTGGTTT--TCAAAATATTAAACTTTTTCCGAAGAGTCCTTTCCTTTACCC-----CGTATACCAGGGAACTCAC-CCA--CCCATAT-CTCCC-CACATCT--TG-CT--TC-C-A--TTGCATGAGGTACCTGATTT-AAACCCGTTCGACG---TTC--GTTTGGTTTTTT-AAT-AC-ATC-------TTA----TT--TTTTTTAT-TC---ATAAAAA-----GCTA------TTAAGA-GTCACAAAATATTGG--------TC---------CCATA------------TTCAA-TCATATAGACT-CTCCC-----
gi|7 : acGA---ATGTCATTCAT-GTTGGGTTCTAC
gi|7 : tatgaaacacaaccaagaaattgcttccctgaagaaaaatcatccagagagagcattttttggtagtgagggcataGCCA---ATG--GTTCTTAGCT----TCTACCATATACCAGAATGCACGATTTCACATAAAGAAAAT----CAAAAT--TTTCAGGGGGATG-TCCC-CAAACATCTATAAAATTCTATTTTTCAGATTCT---GGTCTTAAT--TGATG----TAATTTATACAATTCCA-----GT---ATAAAAAGGTAGGGCTGACTGCAC--CTGGAA--------A--cagtgacttaataaaatggatatgccaatggttcttagcttctaccatataccagaatgcacgatttcacataaagaaaatcaaaattttcagggggatgtccccaaacatctataaaattctatttttcagattctggtcttaattgatgtaatttatacaattccagtataaaaaggtagggctgactgcacctggaaaccagtagtacagtt
gi|8 : tatgaaacacaaccaagaaattgcttccctgaagaaaaatcatccagagagagcattttttggtagtgagggcatagaatgtcattcatgttgggttctaccagtgacttaataaaatggatatG-TAAGTGACTTATGTCATTACT-GCTAAGTTCTACGGTGCAACAGAATACACAATTTGGCACTTAGAAAAC----CAAAccagtagtacagtt
gi|8 : taaatgatttaaatatgaatttaacactccgaggaaacaattttgggtagtTGAGG-AAAGCGA---ATGTCATTCTT-GCTGAATACTACAAATCACTAGAATGCACGATATAGCACTtatctccaaataaaatacctcaaatatatacgtcaaattccactaaagtggctaccctgaaaaatgtgaaggaacattttgttgtaatgaggaaagcgaatgtcattcttgctgaatactacaaatcactagaatgcacgatatagcactttt
gi|9 : taaatgatttaaatatgaatttaacactccgaggaaacaattttgggtagtgtaagtgacttatgtcattactgctaagttctacggtgcaacagaatacacaatttggcacttagaaaaccaaatatctccaaataaaatacctcaaatatatacgtcaaattccactaaagtggctaccctgaaaaatgtgaaggaacattttgttgtaaG-TAAGTGACTTATGTCATTACT-GCTAAGTTCTACGGTGCAACAGAATACACAATTTGGCACTTAGAAAAC----CAAAttt
gi|9 : taaatgatttaaatatgaatttaacactccgaggaaacaattttgggtagtTGAGG-AAAGCGA---ATGTCATTCTT-GCTGAATACTACAAATCACTAGAATGCACGATATAGCACTtatctccaaataaaatacctcaaatatatacgtcaaattccactaaagtggctaccctgaaaaatgtgaaggaacattttgttgtaatgaggaaagcgaatgtcattcttgctgaatactacaaatcactagaatgcacgatatagcactttt
Alignments
lowQualScore : 11 1 1 222222222 111 111 1111 1 111 1111 11111 11 111 1111 11111 111 11 5555555555555555555555555555555 22222222222222222 222222222 111111111 111111 22222 222222222222 11111 11111 11111111111111 333333333333333 999999999999999999999999999999999999 1 1 111 222222
lowQualScore : 1 1 44 0 1 0 333333333 1 6 111 111 1 4444 6 0 1 77 8 555 4 1 22 2222 22 88888 1 11 8 111 1 3 0000 0 33 22222 777 1 0 0 33 6666666666666666666666666666666 3 8 999 4 66 88888888888888888 999999999 3 666666666 55 1 88 0 0 4 1 0 4 9999 777 1 0 888 66 222222 66 777 1 3 5 88888 000000000000 22222 66 0 2 888 66 4 3 0 3 44 6 44 3 3 555 1 555 55 22222 66 3 44 99999999999999 55 4 0 3 3 222222222222222 5 333333333333333333333333333333333333 0 3 0 111 2 888888
lowQualScore : . . .. . . . ......... . . ... ... . .... . . . .. . ... . . .. .... .. ..... . .. . ... . . .... . .. ..... ... . . . .. ............................... . . ... . .. ................. ......... . ......... .. . .. . . . . . . .... ... . . ... .. ...... .. ... . . . ..... ............ ..... .. . . ... .. . . . . .. . .. . . ... . ... .. ..... .. . .. .............. .. . . . . ............... . .................................... . . . ... . ......
lowQualScore : 0 0 55 0 0 0 555555555 0 7 777 777 0 2222 7 0 0 44 8 666 4 9 99 1111 22 00000 0 22 0 777 7 5 6666 8 99 55555 555 0 8 8 88 6666666666666666666666666666666 9 0 333 8 55 00000000000000000 555555555 2 000000000 22 0 44 2 9 4 1 1 4 4444 888 1 5 888 11 999999 99 111 0 0 0 88888 888888888888 55555 99 1 5 111 11 0 6 5 8 66 7 66 3 3 000 5 888 00 33333 00 6 88 99999999999999 00 4 1 1 4 444444444444444 7 333333333333333333333333333333333333 0 2 0 000 5 777777
consensus : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNCACTTGCTCAATCCAACATGCTCCCTCACCTTTTAACTCGCAATCCATGAGGTTCTGGGTTTAAAATATTCGGGAGTACCAGTAAATAACAATCTTTTTTCTCTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAAAACTTNCNAAAATGCAGTATTTGGTNNTTAAGAT-ATNAA-AATGTTCCA-G-GAG-A-GGTCC-CCG---TACCC---CCACCAGC----AG-GGGAT-TCNCCTGAGG-CAAGCGA---ATGTCGTTCCT-GCTGAGTTCTACAATGNACCAGAATGCACGATTTGGCACTAAGAAAAC----CAAAACAATTT--GGGGGANG-CCCC-AAAACACCCCCAGAATTATATTTTTCAGTTTCT---GATCTAAATTCTGATG----TATTTTATACCATTCGA-----GTA---TAANATGGAAGGACTGACAGGAC--CTGAAA--------A--A-G-CACCAGA------A--TGCACGATTTGGCACTTAGAAA-ACCAAAATTTCCCTAGGGGA-----------------GACCCC---------CCCCCA---------TG-GCGGGANGGGAGACCCC-TCCGGTACTCTTCCCCTCCTCGCAAGCCGCGTGCATTTCCCTGGCCCC-TACCAAACGGT-TTTCCTCGATATGAATTCCTTTCT----GGCT---ACGTCCCTGCTCTTTTTCTTAACAA---A-GACT-----TACA--AGAATGCAG--CATTTGNTTTTCAAAATA-TT-AA-CTTTTTCCGGGGAGNCC---------CCC-----CGTA--CCAGGGAACTCAC-CCA--CCCATAT-CTCCC-CACATCT--TG-CT--CC-C-A--TTGCATGAGGTACCGGGTTTAAAACCCGTTGGAAG---TTC--GT----NTTTTT-AAT-AC-ATC-------TT-----TT--TTTTTTTT-TCTTAATAAAAA-----CGT-------TTAAAA-GTCACAAAATATTGG-------AGT---------CCATA------------TTTTA-TCATA-AAA-T-CTCCC-----GATAATGCAGTAT
Reference ( family-179 ) : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNCACTTGCTCAATCCAACATGCTCCCTCACCTTTTAACTCGCAATCCATGAGGTTCTGGGTTTAAAATATTCGGGAGTACCAGTAAATAACAATCTTTTTTCTCTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAAAACTTNCNAAAATGCAGTATTTGGTNTTTAAGAT-ATNAA-AATGTTCCA-G-GAG-A-GGTCC-CCG---TACCC---CCACCAGC----AG-GGGAT-TCNCCTGAGG-CAAGCGA---ATGTCGTTCCT-GCTGAGTTCTACAATGNACCAGAATGCACGATTTGGCACTAAGAAAAC----CAAAACAATTT--GGGGGANG-CCCC-AAAACACCCCCAGAATTATATTTTTCAGTTTCT---GATCTAAATTCTGATG----TATTTTATACCATTCGA-----GTA---TAANATGGAAGGACTGACAGGAC--CTGAAA--------A--A-G-CACCAGA------A--TGCACGATTTGGCACTTAGAAA-ACCAAAATTTCCCTAGGGGA-----------------GACCCC---------CCCCCA---------TG-GCGGGANGGGAGACCCC-TCCGGTACTCTTCCCCTCCTCGCAAGCCGCGTGCATTTCCCTGGCCCC-TACCAAACGGT-TTTCCTCGATATGAATTCCTTTCT----GGCT---ACGTCCCTGCTCTTTTTCTTAACAA---A-GACT-----TACA--AGAATGCAG--CATTTGNTTTTCAAAATA-TT-AA-CTTTTTCCGGGGAGNCC---------CCC-----CGTA--CCAGGGAACTCAC-CCA--CCCATAT-CTCCC-CACATCT--TG-CT--CC-C-A--TTGCATGAGGTACCGGGTTTAAAACCCGTTGGAAG---TTC--GT----NTTTTT-AAT-AC-ATC-------TT-----TT--TTTTTTTT-TCTTAATAAAAA-----CGT-------TTAAAA-GTCACAAAATATTGG-------AGT---------CCATA------------TTTTA-TCATA-AAA-T-CTCCC-----GATAATGCAGTAT
gi|1 : CACTTGCTCAATCCAACATGCTCCCTCACCTTTTAACTCGCAATCCATGAGGTTCTGGGTTTAAAATATTCGGGAGTACCAGTAAATAACAATCTTTTTTCTCT
gi|1 : tagttcaactgaataattgatataaccacACTTGC-TCAATCCAACATGCTCCCTCACCTTT--TAACT--CG-C-A--ATCCATGAGGTTCTGGGTTTAAAATAT-TCGGGAG---TACCAGT----A------AATAACAATC-------TT-----TT--TTCTCTCTAACTT-GTAAAAATACAGCATACAGTTCTTAAGA--TCACAAAActaacttgtaaaaatacagcatacagttcttaagatcacaaaagtgtccaggtacccccaccagcaggggacaacccctccaagaccaaactgcagtaaatcagacaaccatattctttaatcctgaaaacttttttttctcggggtaggtccccatagccacaccagcaacagatgcgacattttgtaatttgaacaactatttcctctctcaaacttactaaaatgcagtatttgcttattaagatataaacaatattacaaagagaggtcctcgtaccaccaccagcaggggattcccctgagacaacgaatgttgttcttgctcagtttcacaattaaccagaaagcacgacttggcactaagaaaaccaaaacaatttggtgaaagccccaaaacacccccagaattatattttccagtttctgatcttaattctgatgtattttataccatttgagtattaaatcgaaggactgacaggacctgaaaaaatgcacaatttggcacaaatttccctaggggagacccctcccccatagcagaaaggaagacctttccggtactcctcccttcctctcaagccgtgtgtatttccctggccccctaccaaaccgttttcctcgatatgaattcctttctggctgaaatgtctctgctcattttcttaacaaatacttacaagaagcatttcatttttttgtcaaaatatttttccggggaggctttccataccagggaactcacccaccaatatctccccacttcatgctcccattgcgtgaggtactgggtttaaaagccattggaattctgtctttttaatatgtctttttttttttttcttaataaaaaagtttaagttgtcacaaaatattggttcaaggagtaaatgacaaccatattttatcataaaatctccctatataataatacagcatgttccagggatccc
gi|1 : tagttcaactgaataattgatataaccaccAACTTGTAAAAATACAGCATACAGTTCTTAAGATCACAAA-AGTG-TCCA-G---------------G---TACCC---CCACCAGC----AG-GGGAgtgtccaggtacccccaccagcaggggacaacccctccaagaccaaactgcagtaaatcagacaaccatattctttaatcctgaaaacttttttttctcggggtaggtccccatagccacaccagcaacagatgcgacattttgtaatttgaacaactatttcctctctcaaacttactaaaatgcagtatttgcttattaagatataaacaatattacaaagagaggtcctcgtaccaccaccagcaggggattcccctgagacaacgaatgttgttcttgctcagtttcacaattaaccagaaagcacgacttggcactaagaaaaccaaaacaatttggtgaaagccccaaaacacccccagaattatattttccagtttctgatcttaattctgatgtattttataccatttgagtattaaatcgaaggactgacaggacctgaaaaaatgcacaatttggcacaaatttccctaggggagacccctcccccatagcagaaaggaagacctttccggtactcctcccttcctctcaagccgtgtgtatttccctggccccctaccaaaccgttttcctcgatatgaattcctttctggctgaaatgtctctgctcattttcttaacaaatacttacaagaagcatttcatttttttgtcaaaatatttttccggggaggctttccataccagggaactcacccaccaatatctccccacttcatgctcccattgcgtgaggtactgggtttaaaagccattggaattctgtctttttaatatgtctttttttttttttcttaataaaaaagtttaagttgtcacaaaatattggttcaaggagtaaatgacaaccatattttatcataaaatctccctatataataatacagcatgttccagggatccc
gi|1 : tagttcaactgaataattgatataaccaccacttgctcaatccaacatgctccctcaccttttaactcgcaatccatgaggttctgggtttaaaatattcgggagtaccagtaaataacaatcttttttctctctTTCTC-G-GGGTA-GGTCC-CCA---TAGCC---ACACCAGC----AA-CAGAT-caacccctccaagaccaaactgcagtaaatcagacaaccatattctttaatcctgaaaacttttttttctcggggtaggtccccatagccacaccagcaacagatgcgacattttgtaatttgaacaactatttcctctctcaaacttactaaaatgcagtatttgcttattaagatataaacaatattacaaagagaggtcctcgtaccaccaccagcaggggattcccctgagacaacgaatgttgttcttgctcagtttcacaattaaccagaaagcacgacttggcactaagaaaaccaaaacaatttggtgaaagccccaaaacacccccagaattatattttccagtttctgatcttaattctgatgtattttataccatttgagtattaaatcgaaggactgacaggacctgaaaaaatgcacaatttggcacaaatttccctaggggagacccctcccccatagcagaaaggaagacctttccggtactcctcccttcctctcaagccgtgtgtatttccctggccccctaccaaaccgttttcctcgatatgaattcctttctggctgaaatgtctctgctcattttcttaacaaatacttacaagaagcatttcatttttttgtcaaaatatttttccggggaggctttccataccagggaactcacccaccaatatctccccacttcatgctcccattgcgtgaggtactgggtttaaaagccattggaattctgtctttttaatatgtctttttttttttttcttaataaaaaagtttaagttgtcacaaaatattggttcaaggagtaaatgacaaccatattttatcataaaatctccctatataataatacagcatgttccagggatccc
gi|1 : tagttcaactgaataattgatataaccaccacttgctcaatccaacatgctccctcaccttttaactcgcaatccatgaggttctgggtttaaaatattcgggagtaccagtaaataacaatcttttttctctctaacttgtaaaaatacagcatacagttcttaagatcacaaaagtgtccaggtacccccaccagcaggggacaacccctccaagaccaaactgcagtaaatcagacaaccatattctttaatcctgaaaacttttttAAACTTACTAAAATGCAGTATTTGCTTATTAAGAT-ATAAACAATATTACA-AAGAG-A-GGTCC-TCG---TACCA---CCACCAGC----AG-GGGAT-TCCCCTGAGA-CAA-CGA---ATGTTGTTCTT-GCTCAGTTTCACAATTAACCAGAAAGCACGACTTGGCACTAAGAAAAC----CAAAACAATTT--GGTGAAAG-CCCC-AAAACACCCCCAGAATTATATTTTCCAGTTTCT---GATCTTAATTCTGATG----TATTTTATACCATTTGA-----GTA---TTAAATCGAAGGACTGACAGGAC--CTGAAA--------A--A----------------A--TGCACAATTTGGCAC------------AAATTTCCCTAGGGGA-----------------GACCCCT--------CCCCCA---------TA-GCAGAAAGGAAGACCTT-TCCGGTACTCCTCCCTTCCTCTCAAGCCGTGTGTATTTCCCTGGCCCCCTACCAAACCGT-TTTCCTCGATATGAATTCCTTTCT----GGCTGAAATGTCTCTGCTCATTTTCTTAACAA---A-TACT-----TACA--AGAA-GCATTTCATTTTTTTGTCAAAATA-TT-------TTTCCGGGGAGGCT---------TTC-----CATA--CCAGGGAACTCAC-CCA--CCAATAT-CTCCC-CACTTCA--TG-CT--CC-C-A--TTGCGTGAGGTACTGGGTTTAAAAGCCATTGGAAT---TCT--GT----CTTTTT-AAT-AT-GTC-------TT-----TT--TTTTTTTT-TCTTAATAAAAA-----AGT-------TTAAGTTGTCACAAAATATTGGTTCAAGGAGTAAATGACAACCATA------------TTTTA-TCATA-AAA-T-CTCCCTATATAATAATACAGCATgcgacattttgtaatttgaacaactatttcctctctcaaacttactaaaatgcagtatttgcttattaagatataaacaatattacaaagagaggtcctcgtaccaccaccagcaggggattcccctgagacaacgaatgttgttcttgctcagtttcacaattaaccagaaagcacgacttggcactaagaaaaccaaaacaatttggtgaaagccccaaaacacccccagaattatattttccagtttctgatcttaattctgatgtattttataccatttgagtattaaatcgaaggactgacaggacctgaaaaaatgcacaatttggcacaaatttccctaggggagacccctcccccatagcagaaaggaagacctttccggtactcctcccttcctctcaagccgtgtgtatttccctggccccctaccaaaccgttttcctcgatatgaattcctttctggctgaaatgtctctgctcattttcttaacaaatacttacaagaagcatttcatttttttgtcaaaatatttttccggggaggctttccataccagggaactcacccaccaatatctccccacttcatgctcccattgcgtgaggtactgggtttaaaagccattggaattctgtctttttaatatgtctttttttttttttcttaataaaaaagtttaagttgtcacaaaatattggttcaaggagtaaatgacaaccatattttatcataaaatctccctatataataatacagcatgttccagggatccc
gi|10 : tagttcaactgaataattgatataaccaccacttgctcaatccaacatgctccctcaccttttaactcgcaatccatgaggttctgggtttaaaatattcgggagtaccagtaaataacaatcttttttctctctaacttgtaaaaatacagcatacagttcttaagatcacaaaagtgtccaggtacccccaccagcaggggacaacccctccaagaccaaactgcagtaaatcagacaaccatattctttaatcctgaaaacttttttttctcggggtaggtccccatagccacaccagcaacagatgcgacattttgtaatttgaacaactatttcctctctcA------A--TGCATGGTTTGGTACTTA-AAA-ATGAAAATTTTCA-AGGGGA-----------------GACCCCAC-------CCCCTA---------TT-GCGGGATGGGAGATCCC-TATGGAACTCCTCCTCTCCTCATAAGCCACGTGCATTGCCCTGGCCCC-TTACAATCAGTATTTTCACAATATGAATTCCTTTCT----GGCT---ACTTCCGTACCCTTTTTCTTAACAA---A-GACT-----TACA--AGAATGCAG--CATTTGTTTTTCAAAATA-TTAAA-CTTTTTCCAGGGAGCCC---------CCgttccagggatccc
gi|11 : AAAATA-TTTAA-ATTATTTTGGGG-GTTG---------CCC-----CGTT--CC-------TC---CAA--ATCATCT-CTCCC----ATCCGCTA-TT--TC-C-ACGTTGAATGGGGTATTGGCTTTAAAACCCGGCGAAAT---TTC--GC----ATCTT---AT-AC-ATC-------TTACAACTT--TTTTTTTT-TCTTAATGGTTA-----CAT-------TTAAAA-GTCACAAAATATTGG-------AGT---------AAATAACAACTTTTTGTTTTTATTCA-A-AAA-TACTC--------AGAATGTAGTATacc
gi|12 : tAAAAA-ACTACA--TTTCCTAGGTAA-----------------GACCCCA--------CCCCCACACCCCTTATC-GCAGGAAGGGAGACCCC-TTCGGTACTTTTCCCTTCCTGGTAAGCCGCGTGCATTGCCCTGACCCC-TAACAAACGGT-TTTCCTCAATAGGAATTCCTTTCT----AGCT---ACGTCTCTGTCTTTTTTCTTAACAC---A-GACT------------AAATAAAA--CATTTGttggtattatcaaattttc
gi|13 : GGGGAGATA---------CCC------GTA--CCCGACAACCCCCGCCA--CACACAC-TTCCT-CAC-----------------------GCATAAGATACCGGGTTTGAAACCCGATGGAGG---GTC--GT----CTCTAT-AAT-A--GTT-------TA-----TT--TCTGTTTT-t
gi|14 : TGCTG----CATTTAATACCATTGCA-----GTACAATAACAATGTAGGGCTAACAGCACAACTGAAACGGCTGTTATTA-G-CACGAGATTCGGCACTTGTACGAATCGGCACTTAAAAACATTAAA---TACTTAGTGAA-----------------GACCCC---------CCACCA---------gtgtgtatacgtgtgctgtattgtacgtgtgcgtgtaaatatcaaacgtttgtagtaaccgtgtttcccataaaagactta
gi|15 : TGCTG----CATTTAATACCATTGCA-----GTACAATAACAATGTAGGGCTAACAGCACAACTGAAACGGCTGTTATTA-G-CACGAGATTCGGCACTTGTACGAATCGGCACTTAAAAACATTAAA---TACTTAGTGAA-----------------GACCCC---------CCACCA---------acctgcaaccccaccc
gi|17 : CC-AACATCT--TG-CT--CC-CCA--GTGCATTAGGTATCAAGTATAAA-TCAAATGTAAGCTGTTC--GT------TTTT-AAT-AC-ATCCCATAGGTT-----CTAGTGTTATTT-T------------------T-------TTGAAA-ATTACAAAATATTGG-------Aacctgcaaccccaccc
gi|18 : ACGTCT--CGGCT--CC-T-A--GTGCATGCGGTATCGGGTTTAAAACAAGGCGAA-------C--TT----TTCTTA-AAT-AA-ATC-------TT-----TT--TTTTTCT----TTAA-AAAAA-----TGT-------TTAAA
gi|19 : ccatcaccacgtT-TTCCC-GTCGCCT--TG-CT--TTTC-A--TTGCATGAGGTAACGGATCTGATACCCAATAGAGG---CTC--AC----TTTTTTAAAT-AT-ATA-------TT-----TT--
gi|2 : cgacatccccttagaacATTTTCGA-G-GAG-A-GGTTG-CCG---TACCC---AAATCAGT----AG-GGGAT-TCACCTGAGGGCAA-CGA---ATGTTGTTCCT-GTTGGGTTCTATAATAAACCAGAATGCACGATTTGTCACGAAGATAAC------AAACAA----------AAA------AAAACACCCCTAGAATTATATTTTTCAGCTTCT---CATCAAAGTTCTGATG----TATTTTATACATTTCGA-----GTA---TAAGATGGAAGGAATGACAGGAC--CTGAAA--------A--ATG-CACCAAA------A--TGCACGATTTTGCACTTAGAAA-AACAAAATTT-CCTA-TGGA-----------------GA-CCC---------CCTCCA---------TG-GCAAAAAGGGAGACCGC-TTCGGTACTCTTTCCCTCCTCGAAAGCCGCGTGCATTT-CCTGGCCCC--AGCAAACGGT-TTTCCTCGATATAAATTCCTTTCT----GGCT---ACGTCAGAA-----------AACAA---A-ACCT-----TACA--AGAATGCAG--CATTTGATTTTCGAAATG-TTAAA-CTTTTTTCGGAGAGG-C---------CCC-----CGCA--CCA-------TA---CA--CCCATAT--GCCC-CGCCTCT--TG--TAACC-C-A--TTGCTTAAGGTACCGGGTTTCAAACCCGTTGAGAG---TTC--AT----ATATTT-AAT-AT-ATC--------------TT--ATATTTTT-TCTTAAAAAAAA-----CAT-------TTAAAA-GTC
gi|20 : GCAGTATTTAGTGTTTAAGAT-ATCAA-AATGTCCCACA-GCC-A-GCTTC-CTG-----CCC---CCA-TAGC----AGCGGGA
gi|21 : TCTCTA-CCTC-TAACAAACTGT-TTTGTCTGTTATGATTTCCTTTTT----GACT---ACGTCCCTGCacccc
gi|3 : tgACTAAA------A--TGCACGCTTTGGCACTAAGAGG-ACCAAAATTTCAC-AGGGG----------------------CT---------CCACTA---------TG-ACGAGATTGGAGACCCC-TCCAGTACTCTTCACTTTCTCGCAAGCCACGTGCTTTTCGCTGGCCCC-TACCAAACGTT-TTATTTCGATATGAATTCCTTTCT----TGAT---ACATCCCTGCTCTTTTTCTTAACTA---A-AACA-----AAAATTAGAATGCAT--CGTTTGGTTTTTAAAACATTT-AA-CTTTTTCCGGGGAGCCC---------CCTCCCCACATA--CCAGGGAGCTCAA-CCT--CCCATAC-CTCCC-CACATCT--TG-CT--CC-C-A--TTGCATGAGGTACCGGATTTAAAACCCGTTGGAAG---TTC--AT----TTTTTT-AAT-AC-A-----------------------------TCTTAATAAAAA-----TAT-------TTAAAA-GTCACAAAATATTGG-------AGT-----------ATA------------TTTTA-TCATA-AAA-T-CTCCC-----GATAATGCAGTAT
gi|3 : AAAATCTCCCGATAATGCAGTATTTGGTA-TTAAGAT-ATCAA-ACTGTTCCA---GAG-ACCATCCACCGCTTTACCCCATCCACCAGCGGGAAG-GGTATATTTCCTGAttggtattaagatatcaaactgttccagagaccatccaccgctttaccccatccaccagcgggaagggtatatttcctgatacattctcttctcatgtcggctccgaaataacttaaacgctcctactacgcccatgaagttgtgttatat
gi|4 : actaaaatgcacgctttggcactaagaggaccaaaatttcacaggggctccactatgacgagattggagacccctccagtactcttcactttctcgcaagccacgtgcttttcgctggcccctaccaaacgttttatttcgatatgaattcctttcttgatacatccctgctctttttcttaactaaaacaaaaattagaatgcatcgtttggtttttaaaacatttaactttttccggggagccccctccccacataccagggagctcaacctcccatacctccccacatcttgctcccattgcatgaggtaccggatttaaaacccgttggaagttcatttttttaatacatcttaataaaaatatttaaaagtcacaaaatattggagtatattttatcatG-CAA-CGA---ATGTCGTTCCT-GCTGGACTCTACAATGAACCAGAATGCACGATTTGGCACTAATAAAACAAAACAAAAAAAT----AGGGGATGTCCCC-AAAACACCCCCAAAATTACAATTTTCAGTTTCT---GATCTAAATTCTGATGGATGTATCTAATACCACTAGAATAGAGTA---TGAAATGAAAGGAATGACAGGAA--CGGAAA--------A--A-GGCATCCGA------A--TATCCGTTTTGAAACCTAGGAA-ACCAA----CTCCTCGGGGA-----------------GACACC---------AACCTA---------TG-GCGGGATGGGAGACCCAGTCCGGTACTCTTCCCCTCCTCGCAAGCCGCGTGCATTTCCCTGGTCCC-TACCAAACGGT-ATTCCTCGATGTGAACTCCTTTTTCAGTGGCT---ATGTCCCTACTCTGTTTCTTTACAA---A-AACT-----TTCA--AGAATGCAG--CATTCGA----------A-TT-----TTTTTTCGGGGAAACC---------CC------CGTA--CCAGGGAATTCAC-CCA--CTCATAT-CCACC-CACATAT--TG-CT--CC-C-A--TTGCATGAGGTACCGGGTTTAAAACCCATTGTAAG---TTC--G-----GGTTTA-AAT-AC-ATC-------TT-----TT--TTTTCTtacattctcttctcatgtcggctccgaaataacttaaacgctcctactacgcccatgaagttgtgttatat
gi|5 : GCTCTATAATGAACCAAAATACACTTTTTGGCACTAAAAAA------CAAAGTAATTT--GGGGGAGG-CCCCCAAAACATCCCCAGAATTATATTTTTCATTTTTTTTTG-TCGAAATTCTGATG----AATTTTATACCATTCTA-----ATA---TAATATGAAAGGACTGACAGGAC--CTGGAA--------A--ATG-CACCAAA------A--TGCACGATTTGGCACTTAAAAA-CCCAAAATTTCC-TAGGGAATACCCCCCCCCCCCCCCGACCCCACCCCACACCCTCCA---------TAAGTAGGAAAGGAGACTC--TACAGTACTCTTCCCCTCCTCGCAAGACGTGTGCATTTCCCTGACCCC-TACCAAACGGT-TTTGCTTGATATGAAATCCTTTCT----GGCT---ACGTCCCTGCTCTTTAACTTAACAACTCATGACTTATCGTATA--AGAATGCAG--CATTTGCTGTT---------------TTTTTCCGGGGAGG-C---------CCC-----AGTA--TCAGGCAACTCAT-CCA--CCCATAT-CTCCC-C-CATCT--TG-CT--CC-A-A--CTGCATGAGCTACCGGTTTTAAAACCTGTTGGAAG---TT
gi|6 : gTTTCT---GATCTAAATACTGATG----TATTTTATACCATTCGA-----GTA---AAACATGGAAGGACTGACAGGAC--CTGAAA--------A--A-GGCACCAAA------A--CACACGACTTGACACTTAGAAA-ACCAAAATGTCA-TAGGAAA-----------------GACCTA---------C----A---------TG-GCGGGACGGGAAACCCT-TCCGGTACTC-----------GCAAGCCTCTTGCATTTCCTTGGCACC-TACCAAACTAT-TTCCCTTGATATGAATTCCTTTCT----GACT---ACGTCC-TGCTCTTTATTTTAACAA---A-ATCT-----TACA--ATAATGCGA--CATTTGGTTTTCAAAATA-TT-AAACTTTTTCCGAAGAGTCCTTTCCTTTACCC-----CGTATACCAGGGAACTCAC-CCA--CCCATAT-CTCCC-CACATCT--TG-CT--TC-C-A--TTGCATGAGGTACCTGATTT-AAACCCGTTCGACG---TTC--GTTTGGTTTTTT-AAT-AC-ATC-------TTA----TT--TTTTTTAT-TC---ATAAAAA-----GCTA------TTAAGA-GTCACAAAATATTGG--------TC---------CCATA------------TTCAA-TCATATAGACT-CTCCC-----
gi|7 : acGA---ATGTCATTCAT-GTTGGGTTCTAC
gi|7 : tatgaaacacaaccaagaaattgcttccctgaagaaaaatcatccagagagagcattttttggtagtgagggcataGCCA---ATG--GTTCTTAGCT----TCTACCATATACCAGAATGCACGATTTCACATAAAGAAAAT----CAAAAT--TTTCAGGGGGATG-TCCC-CAAACATCTATAAAATTCTATTTTTCAGATTCT---GGTCTTAAT--TGATG----TAATTTATACAATTCCA-----GTA---TAAAAAGGTAGGGCTGACTGCAC--CTGGAA--------A--cagtgacttaataaaatggatatgccaatggttcttagcttctaccatataccagaatgcacgatttcacataaagaaaatcaaaattttcagggggatgtccccaaacatctataaaattctatttttcagattctggtcttaattgatgtaatttatacaattccagtataaaaaggtagggctgactgcacctggaaaccagtagtacagtt
gi|8 : tatgaaacacaaccaagaaattgcttccctgaagaaaaatcatccagagagagcattttttggtagtgagggcatagaatgtcattcatgttgggttctaccagtgacttaataaaatggatatG-TAAGTGACTTATGTCATTACT-GCTAAGTTCTACGGTGCAACAGAATACACAATTTGGCACTTAGAAAAC----CAAAccagtagtacagtt
gi|8 : taaatgatttaaatatgaatttaacactccgaggaaacaattttgggtagtTGAGG-AAAGCGA---ATGTCATTCTT-GCTGAATACTACAAATCACTAGAATGCACGATATAGCACTtatctccaaataaaatacctcaaatatatacgtcaaattccactaaagtggctaccctgaaaaatgtgaaggaacattttgttgtaatgaggaaagcgaatgtcattcttgctgaatactacaaatcactagaatgcacgatatagcactttt
gi|9 : taaatgatttaaatatgaatttaacactccgaggaaacaattttgggtagtgtaagtgacttatgtcattactgctaagttctacggtgcaacagaatacacaatttggcacttagaaaaccaaatatctccaaataaaatacctcaaatatatacgtcaaattccactaaagtggctaccctgaaaaatgtgaaggaacattttgttgtaaG-TAAGTGACTTATGTCATTACT-GCTAAGTTCTACGGTGCAACAGAATACACAATTTGGCACTTAGAAAAC----CAAAttt
gi|9 : taaatgatttaaatatgaatttaacactccgaggaaacaattttgggtagtTGAGG-AAAGCGA---ATGTCATTCTT-GCTGAATACTACAAATCACTAGAATGCACGATATAGCACTtatctccaaataaaatacctcaaatatatacgtcaaattccactaaagtggctaccctgaaaaatgtgaaggaacattttgttgtaatgaggaaagcgaatgtcattcttgctgaatactacaaatcactagaatgcacgatatagcactttt
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|16 ): TTTTTTTCTTGATATTACGTAAAAACGACACAAAATATCTGAGCAAATAGCAAGCATTCTCCATAAAACGTATTAAAATGCAGCATTTTGATTTTATCATAATTTTTCCCGTAACTCCACCTTCAGTGGACACCCTCTCT
Alignments
lowQualScore : 11 1 1 222222222 111 111 1111 1 111 1111 11111 11 111 1111 11111 111 11 5555555555555555555555555555555 11111 33333333333333333333333333333333 111111111 111111 2222 222222222222 111111111 11111 11111111111111 333333333333333 999999999999999999999999999999999999 1 1 111 222222
lowQualScore : 1 1 11 0 1 0 333333333 1 6 111 111 1 4444 6 0 1 77 8 555 4 1 22 2222 22 88888 1 11 8 111 1 3 0000 0 33 22222 777 1 0 0 33 6666666666666666666666666666666 3 8 11111 44 00000000000000000000000000000000 2 666666666 55 1 88 0 4 1 0 4 9999 777 0 888 66 222222 66 777 1 3 5 8888 000000000000 222222222 0 2 888 66 4 3 0 3 44 6 44 3 3 555 1 555 55 22222 66 3 44 99999999999999 55 4 0 3 3 222222222222222 5 333333333333333333333333333333333333 0 3 0 111 2 888888
lowQualScore : . . .. . . . ......... . . ... ... . .... . . . .. . ... . . .. .... .. ..... . .. . ... . . .... . .. ..... ... . . . .. ............................... . . ..... .. ................................ . ......... .. . .. . . . . . .... ... . ... .. ...... .. ... . . . .... ............ ......... . . ... .. . . . . .. . .. . . ... . ... .. ..... .. . .. .............. .. . . . . ............... . .................................... . . . ... . ......
lowQualScore : 0 0 88 0 0 0 555555555 0 7 777 777 0 2222 7 0 0 44 8 666 4 9 99 1111 22 00000 0 22 0 777 7 5 6666 8 99 55555 555 0 8 8 88 6666666666666666666666666666666 9 0 66666 00 00000000000000000000000000000000 3 000000000 22 0 44 2 4 1 1 4 4444 888 5 888 11 999999 99 111 0 0 0 8888 888888888888 888888888 1 5 111 11 0 6 5 8 66 7 66 3 3 000 5 888 00 33333 00 6 88 99999999999999 00 4 1 1 4 444444444444444 7 333333333333333333333333333333333333 0 2 0 000 5 777777
consensus : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNCACTTGCTCAATCCAACATGCTCCCTCACCTTTTAACTCGCAATCCATGAGGTTCTGGGTTTAAAATATTCGGGAGTACCAGTAAATAACAATCTTTTTTCTCTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAAAACTTNCNAAAATGCAGTATTTGGTTNTTAAGAT-ATNAA-AATGTTCCA-G-GAG-A-GGTCC-CCG---TACCC---CCACCAGC----AG-GGGAT-TCNCCTGAGG-CAAGCGA---ATGTCGTTCCT-GCTGAGTTCTACAATGNACCAGAATGCACGATTTGGCACTAAGAAAAC----CAAAACAATTT--GGGGGANG-CCCC-AAAACACCCCCAGAATTATATTTTTCAGTTTCT---GATCTAAATTCTGATG----TATTTTATACCATTCGA-----GT---ATAANATGGAAGGACTGACAGGAC--CTGAAA--------A--A-G-CACCAGA------A--TGCACGATTTGGCACTTAGAAA-ACCAAAATTTCCCTAGGGGA-----------------GACCCC---------CCCCCA---------TG-GCGGGANGGGAGACCCC-TCCGGTACTCTTCCCCTCCTCGCAAGCCGCGTGCATTTCCCTGGCCCC-TACCAAACGGT-TTTCCTCGATATGAATTCCTTTCT----GGCT---ACGTCCCTGCTCTTTTTCTTAACAA---A-GACT-----TACA--AGAATGCAG--CATTTGNTTTTCAAAATA-TT-AACTTTTTCCGGGGAGNCC---------CCC-----CG--TACCAGGGAACTCAC-CCA--CCCATAT-CTCCC-CACATCT--TG-CT--CC-C-A--TTGCATGAGGTACCGGGTTTAAAACCCGTTGGAAG---TTC--GT----NTTTTT-AAT-AC-ATC-------TT-----TT--TTTTTTTT-TCTTAATAAAAA-----CGT-------TTAAAA-GTCACAAAATATTGG-------AGT---------CCATA------------TTTTA-TCATA-AAA-T-CTCCC-----GATAATGCAGTAT
Reference ( family-179 ) : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNCACTTGCTCAATCCAACATGCTCCCTCACCTTTTAACTCGCAATCCATGAGGTTCTGGGTTTAAAATATTCGGGAGTACCAGTAAATAACAATCTTTTTTCTCTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAAAACTTNCNAAAATGCAGTATTTGGTNNTTAAGAT-ATNAA-AATGTTCCA-G-GAG-A-GGTCC-CCG---TACCC---CCACCAGC----AG-GGGAT-TCNCCTGAGG-CAAGCGA---ATGTCGTTCCT-GCTGAGTTCTACAATGNACCAGAATGCACGATTTGGCACTAAGAAAAC----CAAAACAATTT--GGGGGANG-CCCC-AAAACACCCCCAGAATTATATTTTTCAGTTTCT---GATCTAAATTCTGATG----TATTTTATACCATTCGA-----GT---ATAANATGGAAGGACTGACAGGAC--CTGAAA--------A--A-G-CACCAGA------A--TGCACGATTTGGCACTTAGAAA-ACCAAAATTTCCCTAGGGGA-----------------GACCCC---------CCCCCA---------TG-GCGGGANGGGAGACCCC-TCCGGTACTCTTCCCCTCCTCGCAAGCCGCGTGCATTTCCCTGGCCCC-TACCAAACGGT-TTTCCTCGATATGAATTCCTTTCT----GGCT---ACGTCCCTGCTCTTTTTCTTAACAA---A-GACT-----TACA--AGAATGCAG--CATTTGNTTTTCAAAATA-TT-AACTTTTTCCGGGGAGNCC---------CCC-----CG--TACCAGGGAACTCAC-CCA--CCCATAT-CTCCC-CACATCT--TG-CT--CC-C-A--TTGCATGAGGTACCGGGTTTAAAACCCGTTGGAAG---TTC--GT----NTTTTT-AAT-AC-ATC-------TT-----TT--TTTTTTTT-TCTTAATAAAAA-----CGT-------TTAAAA-GTCACAAAATATTGG-------AGT---------CCATA------------TTTTA-TCATA-AAA-T-CTCCC-----GATAATGCAGTAT
gi|1 : CACTTGCTCAATCCAACATGCTCCCTCACCTTTTAACTCGCAATCCATGAGGTTCTGGGTTTAAAATATTCGGGAGTACCAGTAAATAACAATCTTTTTTCTCT
gi|1 : tagttcaactgaataattgatataaccacACTTGC-TCAATCCAACATGCTCCCTCACCTTT--TAACT--CG-C-A--ATCCATGAGGTTCTGGGTTTAAAATAT-TCGGGAG---TACCAGT----A------AATAACAATC-------TT-----TT--TTCTCTCTAACTT-GTAAAAATACAGCATACAGTTCTTAAGA--TCACAAAActaacttgtaaaaatacagcatacagttcttaagatcacaaaagtgtccaggtacccccaccagcaggggacaacccctccaagaccaaactgcagtaaatcagacaaccatattctttaatcctgaaaacttttttttctcggggtaggtccccatagccacaccagcaacagatgcgacattttgtaatttgaacaactatttcctctctcaaacttactaaaatgcagtatttgcttattaagatataaacaatattacaaagagaggtcctcgtaccaccaccagcaggggattcccctgagacaacgaatgttgttcttgctcagtttcacaattaaccagaaagcacgacttggcactaagaaaaccaaaacaatttggtgaaagccccaaaacacccccagaattatattttccagtttctgatcttaattctgatgtattttataccatttgagtattaaatcgaaggactgacaggacctgaaaaaatgcacaatttggcacaaatttccctaggggagacccctcccccatagcagaaaggaagacctttccggtactcctcccttcctctcaagccgtgtgtatttccctggccccctaccaaaccgttttcctcgatatgaattcctttctggctgaaatgtctctgctcattttcttaacaaatacttacaagaagcatttcatttttttgtcaaaatatttttccggggaggctttccataccagggaactcacccaccaatatctccccacttcatgctcccattgcgtgaggtactgggtttaaaagccattggaattctgtctttttaatatgtctttttttttttttcttaataaaaaagtttaagttgtcacaaaatattggttcaaggagtaaatgacaaccatattttatcataaaatctccctatataataatacagcatgttccagggatccc
gi|1 : tagttcaactgaataattgatataaccaccAACTTGTAAAAATACAGCATACAGTTCTTAAGATCACAAA-AGTG-TCCA-G---------------G---TACCC---CCACCAGC----AG-GGGAgtgtccaggtacccccaccagcaggggacaacccctccaagaccaaactgcagtaaatcagacaaccatattctttaatcctgaaaacttttttttctcggggtaggtccccatagccacaccagcaacagatgcgacattttgtaatttgaacaactatttcctctctcaaacttactaaaatgcagtatttgcttattaagatataaacaatattacaaagagaggtcctcgtaccaccaccagcaggggattcccctgagacaacgaatgttgttcttgctcagtttcacaattaaccagaaagcacgacttggcactaagaaaaccaaaacaatttggtgaaagccccaaaacacccccagaattatattttccagtttctgatcttaattctgatgtattttataccatttgagtattaaatcgaaggactgacaggacctgaaaaaatgcacaatttggcacaaatttccctaggggagacccctcccccatagcagaaaggaagacctttccggtactcctcccttcctctcaagccgtgtgtatttccctggccccctaccaaaccgttttcctcgatatgaattcctttctggctgaaatgtctctgctcattttcttaacaaatacttacaagaagcatttcatttttttgtcaaaatatttttccggggaggctttccataccagggaactcacccaccaatatctccccacttcatgctcccattgcgtgaggtactgggtttaaaagccattggaattctgtctttttaatatgtctttttttttttttcttaataaaaaagtttaagttgtcacaaaatattggttcaaggagtaaatgacaaccatattttatcataaaatctccctatataataatacagcatgttccagggatccc
gi|1 : tagttcaactgaataattgatataaccaccacttgctcaatccaacatgctccctcaccttttaactcgcaatccatgaggttctgggtttaaaatattcgggagtaccagtaaataacaatcttttttctctctTTCTC-G-GGGTA-GGTCC-CCA---TAGCC---ACACCAGC----AA-CAGAT-caacccctccaagaccaaactgcagtaaatcagacaaccatattctttaatcctgaaaacttttttttctcggggtaggtccccatagccacaccagcaacagatgcgacattttgtaatttgaacaactatttcctctctcaaacttactaaaatgcagtatttgcttattaagatataaacaatattacaaagagaggtcctcgtaccaccaccagcaggggattcccctgagacaacgaatgttgttcttgctcagtttcacaattaaccagaaagcacgacttggcactaagaaaaccaaaacaatttggtgaaagccccaaaacacccccagaattatattttccagtttctgatcttaattctgatgtattttataccatttgagtattaaatcgaaggactgacaggacctgaaaaaatgcacaatttggcacaaatttccctaggggagacccctcccccatagcagaaaggaagacctttccggtactcctcccttcctctcaagccgtgtgtatttccctggccccctaccaaaccgttttcctcgatatgaattcctttctggctgaaatgtctctgctcattttcttaacaaatacttacaagaagcatttcatttttttgtcaaaatatttttccggggaggctttccataccagggaactcacccaccaatatctccccacttcatgctcccattgcgtgaggtactgggtttaaaagccattggaattctgtctttttaatatgtctttttttttttttcttaataaaaaagtttaagttgtcacaaaatattggttcaaggagtaaatgacaaccatattttatcataaaatctccctatataataatacagcatgttccagggatccc
gi|1 : tagttcaactgaataattgatataaccaccacttgctcaatccaacatgctccctcaccttttaactcgcaatccatgaggttctgggtttaaaatattcgggagtaccagtaaataacaatcttttttctctctaacttgtaaaaatacagcatacagttcttaagatcacaaaagtgtccaggtacccccaccagcaggggacaacccctccaagaccaaactgcagtaaatcagacaaccatattctttaatcctgaaaacttttttAAACTTACTAAAATGCAGTATTTGCTTATTAAGAT-ATAAACAATATTACA-AAGAG-A-GGTCC-TCG---TACCA---CCACCAGC----AG-GGGAT-TCCCCTGAGA-CAA-CGA---ATGTTGTTCTT-GCTCAGTTTCACAATTAACCAGAAAGCACGACTTGGCACTAAGAAAAC----CAAAACAATTT--GGTGAAAG-CCCC-AAAACACCCCCAGAATTATATTTTCCAGTTTCT---GATCTTAATTCTGATG----TATTTTATACCATTTGA-----GT---ATTAAATCGAAGGACTGACAGGAC--CTGAAA--------A--A----------------A--TGCACAATTTGGCAC------------AAATTTCCCTAGGGGA-----------------GACCCCT--------CCCCCA---------TA-GCAGAAAGGAAGACCTT-TCCGGTACTCCTCCCTTCCTCTCAAGCCGTGTGTATTTCCCTGGCCCCCTACCAAACCGT-TTTCCTCGATATGAATTCCTTTCT----GGCTGAAATGTCTCTGCTCATTTTCTTAACAA---A-TACT-----TACA--AGAA-GCATTTCATTTTTTTGTCAAAATA-TT------TTTCCGGGGAGGCT---------TTC-----CA--TACCAGGGAACTCAC-CCA--CCAATAT-CTCCC-CACTTCA--TG-CT--CC-C-A--TTGCGTGAGGTACTGGGTTTAAAAGCCATTGGAAT---TCT--GT----CTTTTT-AAT-AT-GTC-------TT-----TT--TTTTTTTT-TCTTAATAAAAA-----AGT-------TTAAGTTGTCACAAAATATTGGTTCAAGGAGTAAATGACAACCATA------------TTTTA-TCATA-AAA-T-CTCCCTATATAATAATACAGCATgcgacattttgtaatttgaacaactatttcctctctcaaacttactaaaatgcagtatttgcttattaagatataaacaatattacaaagagaggtcctcgtaccaccaccagcaggggattcccctgagacaacgaatgttgttcttgctcagtttcacaattaaccagaaagcacgacttggcactaagaaaaccaaaacaatttggtgaaagccccaaaacacccccagaattatattttccagtttctgatcttaattctgatgtattttataccatttgagtattaaatcgaaggactgacaggacctgaaaaaatgcacaatttggcacaaatttccctaggggagacccctcccccatagcagaaaggaagacctttccggtactcctcccttcctctcaagccgtgtgtatttccctggccccctaccaaaccgttttcctcgatatgaattcctttctggctgaaatgtctctgctcattttcttaacaaatacttacaagaagcatttcatttttttgtcaaaatatttttccggggaggctttccataccagggaactcacccaccaatatctccccacttcatgctcccattgcgtgaggtactgggtttaaaagccattggaattctgtctttttaatatgtctttttttttttttcttaataaaaaagtttaagttgtcacaaaatattggttcaaggagtaaatgacaaccatattttatcataaaatctccctatataataatacagcatgttccagggatccc
gi|10 : tagttcaactgaataattgatataaccaccacttgctcaatccaacatgctccctcaccttttaactcgcaatccatgaggttctgggtttaaaatattcgggagtaccagtaaataacaatcttttttctctctaacttgtaaaaatacagcatacagttcttaagatcacaaaagtgtccaggtacccccaccagcaggggacaacccctccaagaccaaactgcagtaaatcagacaaccatattctttaatcctgaaaacttttttttctcggggtaggtccccatagccacaccagcaacagatgcgacattttgtaatttgaacaactatttcctctctcA------A--TGCATGGTTTGGTACTTA-AAA-ATGAAAATTTTCA-AGGGGA-----------------GACCCCAC-------CCCCTA---------TT-GCGGGATGGGAGATCCC-TATGGAACTCCTCCTCTCCTCATAAGCCACGTGCATTGCCCTGGCCCC-TTACAATCAGTATTTTCACAATATGAATTCCTTTCT----GGCT---ACTTCCGTACCCTTTTTCTTAACAA---A-GACT-----TACA--AGAATGCAG--CATTTGTTTTTCAAAATA-TTAAACTTTTTCCAGGGAGCCC---------CCgttccagggatccc
gi|11 : AAAATA-TTTAAATTATTTTGGGG-GTTG---------CCC-----CG--TTCC-------TC---CAA--ATCATCT-CTCCC----ATCCGCTA-TT--TC-C-ACGTTGAATGGGGTATTGGCTTTAAAACCCGGCGAAAT---TTC--GC----ATCTT---AT-AC-ATC-------TTACAACTT--TTTTTTTT-TCTTAATGGTTA-----CAT-------TTAAAA-GTCACAAAATATTGG-------AGT---------AAATAACAACTTTTTGTTTTTATTCA-A-AAA-TACTC--------AGAATGTAGTATacc
gi|12 : tAAAAA-ACTACA--TTTCCTAGGTAA-----------------GACCCCA--------CCCCCACACCCCTTATC-GCAGGAAGGGAGACCCC-TTCGGTACTTTTCCCTTCCTGGTAAGCCGCGTGCATTGCCCTGACCCC-TAACAAACGGT-TTTCCTCAATAGGAATTCCTTTCT----AGCT---ACGTCTCTGTCTTTTTTCTTAACAC---A-GACT------------AAATAAAA--CATTTGttggtattatcaaattttc
gi|13 : GGGGAGATA---------CCC------G--TACCCGACAACCCCCGCCA--CACACAC-TTCCT-CAC-----------------------GCATAAGATACCGGGTTTGAAACCCGATGGAGG---GTC--GT----CTCTAT-AAT-A--GTT-------TA-----TT--TCTGTTTT-t
gi|14 : TGCTG----CATTTAATACCATTGCA-----GTACAATAACAATGTAGGGCTAACAGCACAACTGAAACGGCTGTTATTA-G-CACGAGATTCGGCACTTGTACGAATCGGCACTTAAAAACATTAAA---TACTTAGTGAA-----------------GACCCC---------CCACCA---------gtgtgtatacgtgtgctgtattgtacgtgtgcgtgtaaatatcaaacgtttgtagtaaccgtgtttcccataaaagactta
gi|15 : TGCTG----CATTTAATACCATTGCA-----GTACAATAACAATGTAGGGCTAACAGCACAACTGAAACGGCTGTTATTA-G-CACGAGATTCGGCACTTGTACGAATCGGCACTTAAAAACATTAAA---TACTTAGTGAA-----------------GACCCC---------CCACCA---------acctgcaaccccaccc
gi|17 : CC-AACATCT--TG-CT--CC-CCA--GTGCATTAGGTATCAAGTATAAA-TCAAATGTAAGCTGTTC--GT------TTTT-AAT-AC-ATCCCATAGGTT-----CTAGTGTTATTT-T------------------T-------TTGAAA-ATTACAAAATATTGG-------Aacctgcaaccccaccc
gi|18 : ACGTCT--CGGCT--CC-T-A--GTGCATGCGGTATCGGGTTTAAAACAAGGCGAA-------C--TT----TTCTTA-AAT-AA-ATC-------TT-----TT--TTTTTCT----TTAA-AAAAA-----TGT-------TTAAA
gi|19 : ccatcaccacgtT-TTCCC-GTCGCCT--TG-CT--TTTC-A--TTGCATGAGGTAACGGATCTGATACCCAATAGAGG---CTC--AC----TTTTTTAAAT-AT-ATA-------TT-----TT--
gi|2 : cgacatccccttagaacATTTTCGA-G-GAG-A-GGTTG-CCG---TACCC---AAATCAGT----AG-GGGAT-TCACCTGAGGGCAA-CGA---ATGTTGTTCCT-GTTGGGTTCTATAATAAACCAGAATGCACGATTTGTCACGAAGATAAC------AAACAA----------AAA------AAAACACCCCTAGAATTATATTTTTCAGCTTCT---CATCAAAGTTCTGATG----TATTTTATACATTTCGA-----GT---ATAAGATGGAAGGAATGACAGGAC--CTGAAA--------A--ATG-CACCAAA------A--TGCACGATTTTGCACTTAGAAA-AACAAAATTT-CCTA-TGGA-----------------GA-CCC---------CCTCCA---------TG-GCAAAAAGGGAGACCGC-TTCGGTACTCTTTCCCTCCTCGAAAGCCGCGTGCATTT-CCTGGCCCC--AGCAAACGGT-TTTCCTCGATATAAATTCCTTTCT----GGCT---ACGTCAGAA-----------AACAA---A-ACCT-----TACA--AGAATGCAG--CATTTGATTTTCGAAATG-TTAAACTTTTTTCGGAGAGG-C---------CCC-----CG--CACCA-------TA---CA--CCCATAT--GCCC-CGCCTCT--TG--TAACC-C-A--TTGCTTAAGGTACCGGGTTTCAAACCCGTTGAGAG---TTC--AT----ATATTT-AAT-AT-ATC--------------TT--ATATTTTT-TCTTAAAAAAAA-----CAT-------TTAAAA-GTC
gi|20 : GCAGTATTTAGTGTTTAAGAT-ATCAA-AATGTCCCACA-GCC-A-GCTTC-CTG-----CCC---CCA-TAGC----AGCGGGA
gi|21 : TCTCTA-CCTC-TAACAAACTGT-TTTGTCTGTTATGATTTCCTTTTT----GACT---ACGTCCCTGCacccc
gi|3 : tgACTAAA------A--TGCACGCTTTGGCACTAAGAGG-ACCAAAATTTCAC-AGGGG----------------------CT---------CCACTA---------TG-ACGAGATTGGAGACCCC-TCCAGTACTCTTCACTTTCTCGCAAGCCACGTGCTTTTCGCTGGCCCC-TACCAAACGTT-TTATTTCGATATGAATTCCTTTCT----TGAT---ACATCCCTGCTCTTTTTCTTAACTA---A-AACA-----AAAATTAGAATGCAT--CGTTTGGTTTTTAAAACATTT-AACTTTTTCCGGGGAGCCC---------CCTCCCCACA--TACCAGGGAGCTCAA-CCT--CCCATAC-CTCCC-CACATCT--TG-CT--CC-C-A--TTGCATGAGGTACCGGATTTAAAACCCGTTGGAAG---TTC--AT----TTTTTT-AAT-AC-A-----------------------------TCTTAATAAAAA-----TAT-------TTAAAA-GTCACAAAATATTGG-------AGT-----------ATA------------TTTTA-TCATA-AAA-T-CTCCC-----GATAATGCAGTAT
gi|3 : AAAATCTCCCGATAATGCAGTATTTGGT-ATTAAGAT-ATCAA-ACTGTTCCA---GAG-ACCATCCACCGCTTTACCCCATCCACCAGCGGGAAG-GGTATATTTCCTGAttggtattaagatatcaaactgttccagagaccatccaccgctttaccccatccaccagcgggaagggtatatttcctgatacattctcttctcatgtcggctccgaaataacttaaacgctcctactacgcccatgaagttgtgttatat
gi|4 : actaaaatgcacgctttggcactaagaggaccaaaatttcacaggggctccactatgacgagattggagacccctccagtactcttcactttctcgcaagccacgtgcttttcgctggcccctaccaaacgttttatttcgatatgaattcctttcttgatacatccctgctctttttcttaactaaaacaaaaattagaatgcatcgtttggtttttaaaacatttaactttttccggggagccccctccccacataccagggagctcaacctcccatacctccccacatcttgctcccattgcatgaggtaccggatttaaaacccgttggaagttcatttttttaatacatcttaataaaaatatttaaaagtcacaaaatattggagtatattttatcatG-CAA-CGA---ATGTCGTTCCT-GCTGGACTCTACAATGAACCAGAATGCACGATTTGGCACTAATAAAACAAAACAAAAAAAT----AGGGGATGTCCCC-AAAACACCCCCAAAATTACAATTTTCAGTTTCT---GATCTAAATTCTGATGGATGTATCTAATACCACTAGAATAGAGT---ATGAAATGAAAGGAATGACAGGAA--CGGAAA--------A--A-GGCATCCGA------A--TATCCGTTTTGAAACCTAGGAA-ACCAA----CTCCTCGGGGA-----------------GACACC---------AACCTA---------TG-GCGGGATGGGAGACCCAGTCCGGTACTCTTCCCCTCCTCGCAAGCCGCGTGCATTTCCCTGGTCCC-TACCAAACGGT-ATTCCTCGATGTGAACTCCTTTTTCAGTGGCT---ATGTCCCTACTCTGTTTCTTTACAA---A-AACT-----TTCA--AGAATGCAG--CATTCGA----------A-TT----TTTTTTCGGGGAAACC---------CC------CG--TACCAGGGAATTCAC-CCA--CTCATAT-CCACC-CACATAT--TG-CT--CC-C-A--TTGCATGAGGTACCGGGTTTAAAACCCATTGTAAG---TTC--G-----GGTTTA-AAT-AC-ATC-------TT-----TT--TTTTCTtacattctcttctcatgtcggctccgaaataacttaaacgctcctactacgcccatgaagttgtgttatat
gi|5 : GCTCTATAATGAACCAAAATACACTTTTTGGCACTAAAAAA------CAAAGTAATTT--GGGGGAGG-CCCCCAAAACATCCCCAGAATTATATTTTTCATTTTTTTTTG-TCGAAATTCTGATG----AATTTTATACCATTCTA-----AT---ATAATATGAAAGGACTGACAGGAC--CTGGAA--------A--ATG-CACCAAA------A--TGCACGATTTGGCACTTAAAAA-CCCAAAATTTCC-TAGGGAATACCCCCCCCCCCCCCCGACCCCACCCCACACCCTCCA---------TAAGTAGGAAAGGAGACTC--TACAGTACTCTTCCCCTCCTCGCAAGACGTGTGCATTTCCCTGACCCC-TACCAAACGGT-TTTGCTTGATATGAAATCCTTTCT----GGCT---ACGTCCCTGCTCTTTAACTTAACAACTCATGACTTATCGTATA--AGAATGCAG--CATTTGCTGTT--------------TTTTTCCGGGGAGG-C---------CCC-----AG--TATCAGGCAACTCAT-CCA--CCCATAT-CTCCC-C-CATCT--TG-CT--CC-A-A--CTGCATGAGCTACCGGTTTTAAAACCTGTTGGAAG---TT
gi|6 : gTTTCT---GATCTAAATACTGATG----TATTTTATACCATTCGA-----GT---AAAACATGGAAGGACTGACAGGAC--CTGAAA--------A--AGG-CACCAAA------A--CACACGACTTGACACTTAGAAA-ACCAAAATGT-CATAGGAAA-----------------GA-------------CCTACA---------TG-GCGGGACGGGAAACCCT-TCCGGTA-----------CTCGCAAGCCTCTTGCATTTCCTTGGCACC-TACCAAACTAT-TTCCCTTGATATGAATTCCTTTCT----GACT---ACGT-CCTGCTCTTTATTTTAACAA---A-ATCT-----TACA--ATAATGCGA--CATTTGGTTTTCAAAATA-TTAAACTTTTTCCGAAGAGTCCTTTCCTTTACCC-----CGTATACCAGGGAACTCAC-CCA--CCCATAT-CTCCC-CACATCT--TG-CT--TC-C-A--TTGCATGAGGTACCTGATTT-AAACCCGTTCGACG---TTC--GTTTGGTTTTTT-AAT-AC-ATC-------TTA----TT--TTTTTTAT-TC---ATAAAAA-----GCTA------TTAAGA-GTCACAAAATATTGG--------TC---------CCATA------------TTCAA-TCATATAGACT-CTCCC-----
gi|7 : acGA---ATGTCATTCAT-GTTGGGTTCTAC
gi|7 : tatgaaacacaaccaagaaattgcttccctgaagaaaaatcatccagagagagcattttttggtagtgagggcataGCCA---ATG--GTTCTTAGCT----TCTACCATATACCAGAATGCACGATTTCACATAAAGAAAAT----CAAAAT--TTTCAGGGGGATG-TCCC-CAAACATCTATAAAATTCTATTTTTCAGATTCT---GGTCTTAAT--TGATG----TAATTTATACAATTCCA-----GT---ATAAAAAGGTAGGGCTGACTGCAC--CTGGAA--------A--cagtgacttaataaaatggatatgccaatggttcttagcttctaccatataccagaatgcacgatttcacataaagaaaatcaaaattttcagggggatgtccccaaacatctataaaattctatttttcagattctggtcttaattgatgtaatttatacaattccagtataaaaaggtagggctgactgcacctggaaaccagtagtacagtt
gi|8 : tatgaaacacaaccaagaaattgcttccctgaagaaaaatcatccagagagagcattttttggtagtgagggcatagaatgtcattcatgttgggttctaccagtgacttaataaaatggatatG-TAAGTGACTTATGTCATTACT-GCTAAGTTCTACGGTGCAACAGAATACACAATTTGGCACTTAGAAAAC----CAAAccagtagtacagtt
gi|8 : taaatgatttaaatatgaatttaacactccgaggaaacaattttgggtagtTGAGG-AAAGCGA---ATGTCATTCTT-GCTGAATACTACAAATCACTAGAATGCACGATATAGCACTtatctccaaataaaatacctcaaatatatacgtcaaattccactaaagtggctaccctgaaaaatgtgaaggaacattttgttgtaatgaggaaagcgaatgtcattcttgctgaatactacaaatcactagaatgcacgatatagcactttt
gi|9 : taaatgatttaaatatgaatttaacactccgaggaaacaattttgggtagtgtaagtgacttatgtcattactgctaagttctacggtgcaacagaatacacaatttggcacttagaaaaccaaatatctccaaataaaatacctcaaatatatacgtcaaattccactaaagtggctaccctgaaaaatgtgaaggaacattttgttgtaaG-TAAGTGACTTATGTCATTACT-GCTAAGTTCTACGGTGCAACAGAATACACAATTTGGCACTTAGAAAAC----CAAAttt
gi|9 : taaatgatttaaatatgaatttaacactccgaggaaacaattttgggtagtTGAGG-AAAGCGA---ATGTCATTCTT-GCTGAATACTACAAATCACTAGAATGCACGATATAGCACTtatctccaaataaaatacctcaaatatatacgtcaaattccactaaagtggctaccctgaaaaatgtgaaggaacattttgttgtaatgaggaaagcgaatgtcattcttgctgaatactacaaatcactagaatgcacgatatagcactttt
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|16 ): TTTTTTTCTTGATATTACGTAAAAACGACACAAAATATCTGAGCAAATAGCAAGCATTCTCCATAAAACGTATTAAAATGCAGCATTTTGATTTTATCATAATTTTTCCCGTAACTCCACCTTCAGTGGACACCCTCTCT
Alignments
lowQualScore : 1 1 222222222222222222222 111 1111 1 111 1111 11111 11 111 1111 11111 111 11 5555555555555555555555555555555 22222222222222222 222222222 111111111 111111 22222 222222222222 11111 11111 11111111111111 333333333333333 999999999999999999999999999999999999 1 1 111 222222
lowQualScore : 1 1 3 1 0 1 0 1 000000000000000000000 111 1 4444 6 0 1 77 8 555 4 1 22 2222 22 88888 1 11 8 111 1 3 0000 0 33 22222 777 1 0 0 33 6666666666666666666666666666666 3 8 999 4 66 88888888888888888 999999999 3 666666666 55 1 88 0 0 4 1 0 4 9999 777 1 0 888 66 222222 66 777 1 3 5 88888 000000000000 22222 66 0 2 888 66 4 3 0 3 44 6 44 3 3 555 1 555 55 22222 66 3 44 99999999999999 55 4 0 3 3 222222222222222 5 333333333333333333333333333333333333 0 3 0 111 2 888888
lowQualScore : . . . . . . . . ..................... ... . .... . . . .. . ... . . .. .... .. ..... . .. . ... . . .... . .. ..... ... . . . .. ............................... . . ... . .. ................. ......... . ......... .. . .. . . . . . . .... ... . . ... .. ...... .. ... . . . ..... ............ ..... .. . . ... .. . . . . .. . .. . . ... . ... .. ..... .. . .. .............. .. . . . . ............... . .................................... . . . ... . ......
lowQualScore : 0 0 2 0 0 0 0 7 333333333333333333333 777 0 2222 7 0 0 44 8 666 4 9 99 1111 22 00000 0 22 0 777 7 5 6666 8 99 55555 555 0 8 8 88 6666666666666666666666666666666 9 0 333 8 55 00000000000000000 555555555 2 000000000 22 0 44 2 9 4 1 1 4 4444 888 1 5 888 11 999999 99 111 0 0 0 88888 888888888888 55555 99 1 5 111 11 0 6 5 8 66 7 66 3 3 000 5 888 00 33333 00 6 88 99999999999999 00 4 1 1 4 444444444444444 7 333333333333333333333333333333333333 0 2 0 000 5 777777
consensus : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNCACTTGCTCAATCCAACATGCTCCCTCACCTTTTAACTCGCAATCCATGAGGTTCTGGGTTTAAAATATTCGGGAGTACCAGTAAATAACAATCTTTTTTCTCTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAAAACTTNCNAAAATGCAGTATTTGGTTNTTAAGAT-ATNAA-AATGTTCCA-G-GAG-A-GGTCC-CCG---TACCC---CCACCAGC----AG-GGGAT-TCNCCTGAGG-CAAGCGA---ATGTCGTTCCT-GCTGAGTTCTACAATGNACCAGAATGCACGATTTGGCACTAAGAAAAC----CAAAACAATTT--GGGGGANG-CCCC-AAAACACCCCCAGAATTATATTTTTCAGTTTCT---GATCTAAATTCTGATG----TATTTTATACCATTCGA-----GTA---TAANATGGAAGGACTGACAGGAC--CTGAAA--------A--A-G-CACCAGA------A--TGCACGATTTGGCACTTAGAAA-ACCAAAATTTCCCTAGGGGA-----------------GACCCC---------CCCCCA---------TG-GCGGGANGGGAGACCCC-TCCGGTACTCTTCCCCTCCTCGCAAGCCGCGTGCATTTCCCTGGCCCC-TACCAAACGGT-TTTCCTCGATATGAATTCCTTTCT----GGCT---ACGTCCCTGCTCTTTTTCTTAACAA---A-GACT-----TACA--AGAATGCAG--CATTTGNTTTTCAAAATA-TT-AA-CTTTTTCCGGGGAGNCC---------CCC-----CGTA--CCAGGGAACTCAC-CCA--CCCATAT-CTCCC-CACATCT--TG-CT--CC-C-A--TTGCATGAGGTACCGGGTTTAAAACCCGTTGGAAG---TTC--GT----NTTTTT-AAT-AC-ATC-------TT-----TT--TTTTTTTT-TCTTAATAAAAA-----CGT-------TTAAAA-GTCACAAAATATTGG-------AGT---------CCATA------------TTTTA-TCATA-AAA-T-CTCCC-----GATAATGCAGTAT
Reference ( family-179 ) : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNCACTTGCTCAATCCAACATGCTCCCTCACCTTTTAACTCGCAATCCATGAGGTTCTGGGTTTAAAATATTCGGGAGTACCAGTAAATAACAATCTTTTTTCTCTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAAAACTTNCNAAAATGCAGTATTTGGTTNTTAAGAT-ATNAA-AATGTTCCA-G-GAG-A-GGTCC-CCG---TACCC---CCACCAGC----AG-GGGAT-TCNCCTGAGG-CAAGCGA---ATGTCGTTCCT-GCTGAGTTCTACAATGNACCAGAATGCACGATTTGGCACTAAGAAAAC----CAAAACAATTT--GGGGGANG-CCCC-AAAACACCCCCAGAATTATATTTTTCAGTTTCT---GATCTAAATTCTGATG----TATTTTATACCATTCGA-----GTA---TAANATGGAAGGACTGACAGGAC--CTGAAA--------A--A-G-CACCAGA------A--TGCACGATTTGGCACTTAGAAA-ACCAAAATTTCCCTAGGGGA-----------------GACCCC---------CCCCCA---------TG-GCGGGANGGGAGACCCC-TCCGGTACTCTTCCCCTCCTCGCAAGCCGCGTGCATTTCCCTGGCCCC-TACCAAACGGT-TTTCCTCGATATGAATTCCTTTCT----GGCT---ACGTCCCTGCTCTTTTTCTTAACAA---A-GACT-----TACA--AGAATGCAG--CATTTGNTTTTCAAAATA-TT-AA-CTTTTTCCGGGGAGNCC---------CCC-----CGTA--CCAGGGAACTCAC-CCA--CCCATAT-CTCCC-CACATCT--TG-CT--CC-C-A--TTGCATGAGGTACCGGGTTTAAAACCCGTTGGAAG---TTC--GT----NTTTTT-AAT-AC-ATC-------TT-----TT--TTTTTTTT-TCTTAATAAAAA-----CGT-------TTAAAA-GTCACAAAATATTGG-------AGT---------CCATA------------TTTTA-TCATA-AAA-T-CTCCC-----GATAATGCAGTAT
gi|1 : CACTTGCTCAATCCAACATGCTCCCTCACCTTTTAACTCGCAATCCATGAGGTTCTGGGTTTAAAATATTCGGGAGTACCAGTAAATAACAATCTTTTTTCTCT
gi|1 : tagttcaactgaataattgatataaccacACTTGC-TCAATCCAACATGCTCCCTCACCTTT--TAACT--CG-C-A--ATCCATGAGGTTCTGGGTTTAAAATAT-TCGGGAG---TACCAGT----A------AATAACAATC-------TT-----TT--TTCTCTCTAACTT-GTAAAAATACAGCATACAGTTCTTAAGA--TCACAAAActaacttgtaaaaatacagcatacagttcttaagatcacaaaagtgtccaggtacccccaccagcaggggacaacccctccaagaccaaactgcagtaaatcagacaaccatattctttaatcctgaaaacttttttttctcggggtaggtccccatagccacaccagcaacagatgcgacattttgtaatttgaacaactatttcctctctcaaacttactaaaatgcagtatttgcttattaagatataaacaatattacaaagagaggtcctcgtaccaccaccagcaggggattcccctgagacaacgaatgttgttcttgctcagtttcacaattaaccagaaagcacgacttggcactaagaaaaccaaaacaatttggtgaaagccccaaaacacccccagaattatattttccagtttctgatcttaattctgatgtattttataccatttgagtattaaatcgaaggactgacaggacctgaaaaaatgcacaatttggcacaaatttccctaggggagacccctcccccatagcagaaaggaagacctttccggtactcctcccttcctctcaagccgtgtgtatttccctggccccctaccaaaccgttttcctcgatatgaattcctttctggctgaaatgtctctgctcattttcttaacaaatacttacaagaagcatttcatttttttgtcaaaatatttttccggggaggctttccataccagggaactcacccaccaatatctccccacttcatgctcccattgcgtgaggtactgggtttaaaagccattggaattctgtctttttaatatgtctttttttttttttcttaataaaaaagtttaagttgtcacaaaatattggttcaaggagtaaatgacaaccatattttatcataaaatctccctatataataatacagcatgttccagggatccc
gi|1 : tagttcaactgaataattgatataaccaccAACTTGTAAAAATACAGCATACAGTTCTTAAGATCACAAA-AGTGT-CCA-G-G-----------------TACCC---CCACCAGC----AG-GGGAgtgtccaggtacccccaccagcaggggacaacccctccaagaccaaactgcagtaaatcagacaaccatattctttaatcctgaaaacttttttttctcggggtaggtccccatagccacaccagcaacagatgcgacattttgtaatttgaacaactatttcctctctcaaacttactaaaatgcagtatttgcttattaagatataaacaatattacaaagagaggtcctcgtaccaccaccagcaggggattcccctgagacaacgaatgttgttcttgctcagtttcacaattaaccagaaagcacgacttggcactaagaaaaccaaaacaatttggtgaaagccccaaaacacccccagaattatattttccagtttctgatcttaattctgatgtattttataccatttgagtattaaatcgaaggactgacaggacctgaaaaaatgcacaatttggcacaaatttccctaggggagacccctcccccatagcagaaaggaagacctttccggtactcctcccttcctctcaagccgtgtgtatttccctggccccctaccaaaccgttttcctcgatatgaattcctttctggctgaaatgtctctgctcattttcttaacaaatacttacaagaagcatttcatttttttgtcaaaatatttttccggggaggctttccataccagggaactcacccaccaatatctccccacttcatgctcccattgcgtgaggtactgggtttaaaagccattggaattctgtctttttaatatgtctttttttttttttcttaataaaaaagtttaagttgtcacaaaatattggttcaaggagtaaatgacaaccatattttatcataaaatctccctatataataatacagcatgttccagggatccc
gi|1 : tagttcaactgaataattgatataaccaccacttgctcaatccaacatgctccctcaccttttaactcgcaatccatgaggttctgggtttaaaatattcgggagtaccagtaaataacaatcttttttctctctTTCTC-G-GGGTA-GGTCC-CCA---TAGCC---ACACCAGC----AA-CAGAT-caacccctccaagaccaaactgcagtaaatcagacaaccatattctttaatcctgaaaacttttttttctcggggtaggtccccatagccacaccagcaacagatgcgacattttgtaatttgaacaactatttcctctctcaaacttactaaaatgcagtatttgcttattaagatataaacaatattacaaagagaggtcctcgtaccaccaccagcaggggattcccctgagacaacgaatgttgttcttgctcagtttcacaattaaccagaaagcacgacttggcactaagaaaaccaaaacaatttggtgaaagccccaaaacacccccagaattatattttccagtttctgatcttaattctgatgtattttataccatttgagtattaaatcgaaggactgacaggacctgaaaaaatgcacaatttggcacaaatttccctaggggagacccctcccccatagcagaaaggaagacctttccggtactcctcccttcctctcaagccgtgtgtatttccctggccccctaccaaaccgttttcctcgatatgaattcctttctggctgaaatgtctctgctcattttcttaacaaatacttacaagaagcatttcatttttttgtcaaaatatttttccggggaggctttccataccagggaactcacccaccaatatctccccacttcatgctcccattgcgtgaggtactgggtttaaaagccattggaattctgtctttttaatatgtctttttttttttttcttaataaaaaagtttaagttgtcacaaaatattggttcaaggagtaaatgacaaccatattttatcataaaatctccctatataataatacagcatgttccagggatccc
gi|1 : tagttcaactgaataattgatataaccaccacttgctcaatccaacatgctccctcaccttttaactcgcaatccatgaggttctgggtttaaaatattcgggagtaccagtaaataacaatcttttttctctctaacttgtaaaaatacagcatacagttcttaagatcacaaaagtgtccaggtacccccaccagcaggggacaacccctccaagaccaaactgcagtaaatcagacaaccatattctttaatcctgaaaacttttttAAACTTACTAAAATGCAGTATTTGCTTATTAAGAT-ATAAACAATATTACA-AAGAG-A-GGTCC-TCG---TACCA---CCACCAGC----AG-GGGAT-TCCCCTGAGA-CAA-CGA---ATGTTGTTCTT-GCTCAGTTTCACAATTAACCAGAAAGCACGACTTGGCACTAAGAAAAC----CAAAACAATTT--GGTGAAAG-CCCC-AAAACACCCCCAGAATTATATTTTCCAGTTTCT---GATCTTAATTCTGATG----TATTTTATACCATTTGA-----GTA---TTAAATCGAAGGACTGACAGGAC--CTGAAA--------A--A----------------A--TGCACAATTTGGCAC------------AAATTTCCCTAGGGGA-----------------GACCCCT--------CCCCCA---------TA-GCAGAAAGGAAGACCTT-TCCGGTACTCCTCCCTTCCTCTCAAGCCGTGTGTATTTCCCTGGCCCCCTACCAAACCGT-TTTCCTCGATATGAATTCCTTTCT----GGCTGAAATGTCTCTGCTCATTTTCTTAACAA---A-TACT-----TACA--AGAA-GCATTTCATTTTTTTGTCAAAATA-TT-------TTTCCGGGGAGGCT---------TTC-----CATA--CCAGGGAACTCAC-CCA--CCAATAT-CTCCC-CACTTCA--TG-CT--CC-C-A--TTGCGTGAGGTACTGGGTTTAAAAGCCATTGGAAT---TCT--GT----CTTTTT-AAT-AT-GTC-------TT-----TT--TTTTTTTT-TCTTAATAAAAA-----AGT-------TTAAGTTGTCACAAAATATTGGTTCAAGGAGTAAATGACAACCATA------------TTTTA-TCATA-AAA-T-CTCCCTATATAATAATACAGCATgcgacattttgtaatttgaacaactatttcctctctcaaacttactaaaatgcagtatttgcttattaagatataaacaatattacaaagagaggtcctcgtaccaccaccagcaggggattcccctgagacaacgaatgttgttcttgctcagtttcacaattaaccagaaagcacgacttggcactaagaaaaccaaaacaatttggtgaaagccccaaaacacccccagaattatattttccagtttctgatcttaattctgatgtattttataccatttgagtattaaatcgaaggactgacaggacctgaaaaaatgcacaatttggcacaaatttccctaggggagacccctcccccatagcagaaaggaagacctttccggtactcctcccttcctctcaagccgtgtgtatttccctggccccctaccaaaccgttttcctcgatatgaattcctttctggctgaaatgtctctgctcattttcttaacaaatacttacaagaagcatttcatttttttgtcaaaatatttttccggggaggctttccataccagggaactcacccaccaatatctccccacttcatgctcccattgcgtgaggtactgggtttaaaagccattggaattctgtctttttaatatgtctttttttttttttcttaataaaaaagtttaagttgtcacaaaatattggttcaaggagtaaatgacaaccatattttatcataaaatctccctatataataatacagcatgttccagggatccc
gi|10 : tagttcaactgaataattgatataaccaccacttgctcaatccaacatgctccctcaccttttaactcgcaatccatgaggttctgggtttaaaatattcgggagtaccagtaaataacaatcttttttctctctaacttgtaaaaatacagcatacagttcttaagatcacaaaagtgtccaggtacccccaccagcaggggacaacccctccaagaccaaactgcagtaaatcagacaaccatattctttaatcctgaaaacttttttttctcggggtaggtccccatagccacaccagcaacagatgcgacattttgtaatttgaacaactatttcctctctcA------A--TGCATGGTTTGGTACTTA-AAA-ATGAAAATTTTCA-AGGGGA-----------------GACCCCAC-------CCCCTA---------TT-GCGGGATGGGAGATCCC-TATGGAACTCCTCCTCTCCTCATAAGCCACGTGCATTGCCCTGGCCCC-TTACAATCAGTATTTTCACAATATGAATTCCTTTCT----GGCT---ACTTCCGTACCCTTTTTCTTAACAA---A-GACT-----TACA--AGAATGCAG--CATTTGTTTTTCAAAATA-TTAAA-CTTTTTCCAGGGAGCCC---------CCgttccagggatccc
gi|11 : AAAATA-TTTAA-ATTATTTTGGGG-GTTG---------CCC-----CGTT--CC-------TC---CAA--ATCATCT-CTCCC----ATCCGCTA-TT--TC-C-ACGTTGAATGGGGTATTGGCTTTAAAACCCGGCGAAAT---TTC--GC----ATCTT---AT-AC-ATC-------TTACAACTT--TTTTTTTT-TCTTAATGGTTA-----CAT-------TTAAAA-GTCACAAAATATTGG-------AGT---------AAATAACAACTTTTTGTTTTTATTCA-A-AAA-TACTC--------AGAATGTAGTATacc
gi|12 : tAAAAA-ACTACA--TTTCCTAGGTAA-----------------GACCCCA--------CCCCCACACCCCTTATC-GCAGGAAGGGAGACCCC-TTCGGTACTTTTCCCTTCCTGGTAAGCCGCGTGCATTGCCCTGACCCC-TAACAAACGGT-TTTCCTCAATAGGAATTCCTTTCT----AGCT---ACGTCTCTGTCTTTTTTCTTAACAC---A-GACT------------AAATAAAA--CATTTGttggtattatcaaattttc
gi|13 : GGGGAGATA---------CCC------GTA--CCCGACAACCCCCGCCA--CACACAC-TTCCT-CAC-----------------------GCATAAGATACCGGGTTTGAAACCCGATGGAGG---GTC--GT----CTCTAT-AAT-A--GTT-------TA-----TT--TCTGTTTT-t
gi|14 : TGCTG----CATTTAATACCATTGCA-----GTACAATAACAATGTAGGGCTAACAGCACAACTGAAACGGCTGTTATTA-G-CACGAGATTCGGCACTTGTACGAATCGGCACTTAAAAACATTAAA---TACTTAGTGAA-----------------GACCCC---------CCACCA---------gtgtgtatacgtgtgctgtattgtacgtgtgcgtgtaaatatcaaacgtttgtagtaaccgtgtttcccataaaagactta
gi|15 : TGCTG----CATTTAATACCATTGCA-----GTACAATAACAATGTAGGGCTAACAGCACAACTGAAACGGCTGTTATTA-G-CACGAGATTCGGCACTTGTACGAATCGGCACTTAAAAACATTAAA---TACTTAGTGAA-----------------GACCCC---------CCACCA---------acctgcaaccccaccc
gi|17 : CC-AACATCT--TG-CT--CC-CCA--GTGCATTAGGTATCAAGTATAAA-TCAAATGTAAGCTGTTC--GT------TTTT-AAT-AC-ATCCCATAGGTT-----CTAGTGTTATTT-T------------------T-------TTGAAA-ATTACAAAATATTGG-------Aacctgcaaccccaccc
gi|18 : ACGTCT--CGGCT--CC-T-A--GTGCATGCGGTATCGGGTTTAAAACAAGGCGAA-------C--TT----TTCTTA-AAT-AA-ATC-------TT-----TT--TTTTTCT----TTAA-AAAAA-----TGT-------TTAAA
gi|19 : ccatcaccacgtT-TTCCC-GTCGCCT--TG-CT--TTTC-A--TTGCATGAGGTAACGGATCTGATACCCAATAGAGG---CTC--AC----TTTTTTAAAT-AT-ATA-------TT-----TT--
gi|2 : cgacatccccttagaacATTTTCGA-G-GAG-A-GGTTG-CCG---TACCC---AAATCAGT----AG-GGGAT-TCACCTGAGGGCAA-CGA---ATGTTGTTCCT-GTTGGGTTCTATAATAAACCAGAATGCACGATTTGTCACGAAGATAAC------AAACAA----------AAA------AAAACACCCCTAGAATTATATTTTTCAGCTTCT---CATCAAAGTTCTGATG----TATTTTATACATTTCGA-----GTA---TAAGATGGAAGGAATGACAGGAC--CTGAAA--------A--ATG-CACCAAA------A--TGCACGATTTTGCACTTAGAAA-AACAAAATTT-CCTA-TGGA-----------------GA-CCC---------CCTCCA---------TG-GCAAAAAGGGAGACCGC-TTCGGTACTCTTTCCCTCCTCGAAAGCCGCGTGCATTT-CCTGGCCCC--AGCAAACGGT-TTTCCTCGATATAAATTCCTTTCT----GGCT---ACGTCAGAA-----------AACAA---A-ACCT-----TACA--AGAATGCAG--CATTTGATTTTCGAAATG-TTAAA-CTTTTTTCGGAGAGG-C---------CCC-----CGCA--CCA-------TA---CA--CCCATAT--GCCC-CGCCTCT--TG--TAACC-C-A--TTGCTTAAGGTACCGGGTTTCAAACCCGTTGAGAG---TTC--AT----ATATTT-AAT-AT-ATC--------------TT--ATATTTTT-TCTTAAAAAAAA-----CAT-------TTAAAA-GTC
gi|20 : GCAGTATTTAGTGTTTAAGAT-ATCAA-AATGTCCCACA-GCC-A-GCTTC-CTG-----CCC---CCA-TAGC----AGCGGGA
gi|21 : TCTCTA-CCTC-TAACAAACTGT-TTTGTCTGTTATGATTTCCTTTTT----GACT---ACGTCCCTGCacccc
gi|3 : tgACTAAA------A--TGCACGCTTTGGCACTAAGAGG-ACCAAAATTTCAC-AGGGG----------------------CT---------CCACTA---------TG-ACGAGATTGGAGACCCC-TCCAGTACTCTTCACTTTCTCGCAAGCCACGTGCTTTTCGCTGGCCCC-TACCAAACGTT-TTATTTCGATATGAATTCCTTTCT----TGAT---ACATCCCTGCTCTTTTTCTTAACTA---A-AACA-----AAAATTAGAATGCAT--CGTTTGGTTTTTAAAACATTT-AA-CTTTTTCCGGGGAGCCC---------CCTCCCCACATA--CCAGGGAGCTCAA-CCT--CCCATAC-CTCCC-CACATCT--TG-CT--CC-C-A--TTGCATGAGGTACCGGATTTAAAACCCGTTGGAAG---TTC--AT----TTTTTT-AAT-AC-A-----------------------------TCTTAATAAAAA-----TAT-------TTAAAA-GTCACAAAATATTGG-------AGT-----------ATA------------TTTTA-TCATA-AAA-T-CTCCC-----GATAATGCAGTAT
gi|3 : AAAATCTCCCGATAATGCAGTATTTGG-TATTAAGAT-ATCAA-ACTGTTCCA---GAG-ACCATCCACCGCTTTACCCCATCCACCAGCGGGAAG-GGTATATTTCCTGAttggtattaagatatcaaactgttccagagaccatccaccgctttaccccatccaccagcgggaagggtatatttcctgatacattctcttctcatgtcggctccgaaataacttaaacgctcctactacgcccatgaagttgtgttatat
gi|4 : actaaaatgcacgctttggcactaagaggaccaaaatttcacaggggctccactatgacgagattggagacccctccagtactcttcactttctcgcaagccacgtgcttttcgctggcccctaccaaacgttttatttcgatatgaattcctttcttgatacatccctgctctttttcttaactaaaacaaaaattagaatgcatcgtttggtttttaaaacatttaactttttccggggagccccctccccacataccagggagctcaacctcccatacctccccacatcttgctcccattgcatgaggtaccggatttaaaacccgttggaagttcatttttttaatacatcttaataaaaatatttaaaagtcacaaaatattggagtatattttatcatG-CAA-CGA---ATGTCGTTCCT-GCTGGACTCTACAATGAACCAGAATGCACGATTTGGCACTAATAAAACAAAACAAAAAAAT----AGGGGATGTCCCC-AAAACACCCCCAAAATTACAATTTTCAGTTTCT---GATCTAAATTCTGATGGATGTATCTAATACCACTAGAATAGAGTA---TGAAATGAAAGGAATGACAGGAA--CGGAAA--------A--A-GGCATCCGA------A--TATCCGTTTTGAAACCTAGGAA-ACCAA----CTCCTCGGGGA-----------------GACACC---------AACCTA---------TG-GCGGGATGGGAGACCCAGTCCGGTACTCTTCCCCTCCTCGCAAGCCGCGTGCATTTCCCTGGTCCC-TACCAAACGGT-ATTCCTCGATGTGAACTCCTTTTTCAGTGGCT---ATGTCCCTACTCTGTTTCTTTACAA---A-AACT-----TTCA--AGAATGCAG--CATTCGA----------A-TT-----TTTTTTCGGGGAAACC---------CC------CGTA--CCAGGGAATTCAC-CCA--CTCATAT-CCACC-CACATAT--TG-CT--CC-C-A--TTGCATGAGGTACCGGGTTTAAAACCCATTGTAAG---TTC--G-----GGTTTA-AAT-AC-ATC-------TT-----TT--TTTTCTtacattctcttctcatgtcggctccgaaataacttaaacgctcctactacgcccatgaagttgtgttatat
gi|5 : GCTCTATAATGAACCAAAATACACTTTTTGGCACTAAAAAA------CAAAGTAATTT--GGGGGAGG-CCCCCAAAACATCCCCAGAATTATATTTTTCATTTTTTTTTG-TCGAAATTCTGATG----AATTTTATACCATTCTA-----ATA---TAATATGAAAGGACTGACAGGAC--CTGGAA--------A--ATG-CACCAAA------A--TGCACGATTTGGCACTTAAAAA-CCCAAAATTTCC-TAGGGAATACCCCCCCCCCCCCCCGACCCCACCCCACACCCTCCA---------TAAGTAGGAAAGGAGACTC--TACAGTACTCTTCCCCTCCTCGCAAGACGTGTGCATTTCCCTGACCCC-TACCAAACGGT-TTTGCTTGATATGAAATCCTTTCT----GGCT---ACGTCCCTGCTCTTTAACTTAACAACTCATGACTTATCGTATA--AGAATGCAG--CATTTGCTGTT---------------TTTTTCCGGGGAGG-C---------CCC-----AGTA--TCAGGCAACTCAT-CCA--CCCATAT-CTCCC-C-CATCT--TG-CT--CC-A-A--CTGCATGAGCTACCGGTTTTAAAACCTGTTGGAAG---TT
gi|6 : gTTTCT---GATCTAAATACTGATG----TATTTTATACCATTCGA-----GTA---AAACATGGAAGGACTGACAGGAC--CTGAAA--------A--A-GGCACCAAA------A--CACACGACTTGACACTTAGAAA-ACCAAAATGTCA-TAGGAAA-----------------GACCTA---------C----A---------TG-GCGGGACGGGAAACCCT-TCCGGTACTC-----------GCAAGCCTCTTGCATTTCCTTGGCACC-TACCAAACTAT-TTCCCTTGATATGAATTCCTTTCT----GACT---ACGTCC-TGCTCTTTATTTTAACAA---A-ATCT-----TACA--ATAATGCGA--CATTTGGTTTTCAAAATA-TT-AAACTTTTTCCGAAGAGTCCTTTCCTTTACCC-----CGTATACCAGGGAACTCAC-CCA--CCCATAT-CTCCC-CACATCT--TG-CT--TC-C-A--TTGCATGAGGTACCTGATTT-AAACCCGTTCGACG---TTC--GTTTGGTTTTTT-AAT-AC-ATC-------TTA----TT--TTTTTTAT-TC---ATAAAAA-----GCTA------TTAAGA-GTCACAAAATATTGG--------TC---------CCATA------------TTCAA-TCATATAGACT-CTCCC-----
gi|7 : acGA---ATGTCATTCAT-GTTGGGTTCTAC
gi|7 : tatgaaacacaaccaagaaattgcttccctgaagaaaaatcatccagagagagcattttttggtagtgagggcataGCCA---ATG--GTTCTTAGCT----TCTACCATATACCAGAATGCACGATTTCACATAAAGAAAAT----CAAAAT--TTTCAGGGGGATG-TCCC-CAAACATCTATAAAATTCTATTTTTCAGATTCT---GGTCTTAAT--TGATG----TAATTTATACAATTCCA-----GTA---TAAAAAGGTAGGGCTGACTGCAC--CTGGAA--------A--cagtgacttaataaaatggatatgccaatggttcttagcttctaccatataccagaatgcacgatttcacataaagaaaatcaaaattttcagggggatgtccccaaacatctataaaattctatttttcagattctggtcttaattgatgtaatttatacaattccagtataaaaaggtagggctgactgcacctggaaaccagtagtacagtt
gi|8 : tatgaaacacaaccaagaaattgcttccctgaagaaaaatcatccagagagagcattttttggtagtgagggcatagaatgtcattcatgttgggttctaccagtgacttaataaaatggatatG-TAAGTGACTTATGTCATTACT-GCTAAGTTCTACGGTGCAACAGAATACACAATTTGGCACTTAGAAAAC----CAAAccagtagtacagtt
gi|8 : taaatgatttaaatatgaatttaacactccgaggaaacaattttgggtagtTGAGG-AAAGCGA---ATGTCATTCTT-GCTGAATACTACAAATCACTAGAATGCACGATATAGCACTtatctccaaataaaatacctcaaatatatacgtcaaattccactaaagtggctaccctgaaaaatgtgaaggaacattttgttgtaatgaggaaagcgaatgtcattcttgctgaatactacaaatcactagaatgcacgatatagcactttt
gi|9 : taaatgatttaaatatgaatttaacactccgaggaaacaattttgggtagtgtaagtgacttatgtcattactgctaagttctacggtgcaacagaatacacaatttggcacttagaaaaccaaatatctccaaataaaatacctcaaatatatacgtcaaattccactaaagtggctaccctgaaaaatgtgaaggaacattttgttgtaaG-TAAGTGACTTATGTCATTACT-GCTAAGTTCTACGGTGCAACAGAATACACAATTTGGCACTTAGAAAAC----CAAAttt
gi|9 : taaatgatttaaatatgaatttaacactccgaggaaacaattttgggtagtTGAGG-AAAGCGA---ATGTCATTCTT-GCTGAATACTACAAATCACTAGAATGCACGATATAGCACTtatctccaaataaaatacctcaaatatatacgtcaaattccactaaagtggctaccctgaaaaatgtgaaggaacattttgttgtaatgaggaaagcgaatgtcattcttgctgaatactacaaatcactagaatgcacgatatagcactttt
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|16 ): TTTTTTTCTTGATATTACGTAAAAACGACACAAAATATCTGAGCAAATAGCAAGCATTCTCCATAAAACGTATTAAAATGCAGCATTTTGATTTTATCATAATTTTTCCCGTAACTCCACCTTCAGTGGACACCCTCTCT
Alignments
lowQualScore : 1 1 222222222222222222222 111 1111 1 111 1111 11111 11 111 1111 11111 111 11 5555555555555555555555555555555 22222222222222222 222222222 111111111 111111 22222 222222222222 11111 11111 11111111111111 333333333333333 999999999999999999999999999999999999 1 1 111 222222
lowQualScore : 1 1 3 1 0 1 0 1 000000000000000000000 111 1 4444 6 0 1 77 8 555 4 1 22 2222 22 88888 1 11 8 111 1 3 0000 0 33 22222 777 1 0 0 33 6666666666666666666666666666666 3 8 999 4 66 88888888888888888 999999999 3 666666666 55 1 88 0 0 4 1 0 4 9999 777 1 0 888 66 222222 66 777 1 3 5 88888 000000000000 22222 66 0 2 888 66 4 3 0 3 44 6 44 3 3 555 1 555 55 22222 66 3 44 99999999999999 55 4 0 3 3 222222222222222 5 333333333333333333333333333333333333 0 3 0 111 2 888888
lowQualScore : . . . . . . . . ..................... ... . .... . . . .. . ... . . .. .... .. ..... . .. . ... . . .... . .. ..... ... . . . .. ............................... . . ... . .. ................. ......... . ......... .. . .. . . . . . . .... ... . . ... .. ...... .. ... . . . ..... ............ ..... .. . . ... .. . . . . .. . .. . . ... . ... .. ..... .. . .. .............. .. . . . . ............... . .................................... . . . ... . ......
lowQualScore : 0 0 2 0 0 0 0 7 333333333333333333333 777 0 2222 7 0 0 44 8 666 4 9 99 1111 22 00000 0 22 0 777 7 5 6666 8 99 55555 555 0 8 8 88 6666666666666666666666666666666 9 0 333 8 55 00000000000000000 555555555 2 000000000 22 0 44 2 9 4 1 1 4 4444 888 1 5 888 11 999999 99 111 0 0 0 88888 888888888888 55555 99 1 5 111 11 0 6 5 8 66 7 66 3 3 000 5 888 00 33333 00 6 88 99999999999999 00 4 1 1 4 444444444444444 7 333333333333333333333333333333333333 0 2 0 000 5 777777
consensus : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNCACTTGCTCAATCCAACATGCTCCCTCACCTTTTAACTCGCAATCCATGAGGTTCTGGGTTTAAAATATTCGGGAGTACCAGTAAATAACAATCTTTTTTCTCTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAAAACTTNCNAAAATGCAGTATTTGGTTNTTAAGAT-ATNAA-AATGTTCCA-G-GAG-A-GGTCC-CCG---TACCC---CCACCAGC----AG-GGGAT-TCNCCTGAGG-CAAGCGA---ATGTCGTTCCT-GCTGAGTTCTACAATGNACCAGAATGCACGATTTGGCACTAAGAAAAC----CAAAACAATTT--GGGGGANG-CCCC-AAAACACCCCCAGAATTATATTTTTCAGTTTCT---GATCTAAATTCTGATG----TATTTTATACCATTCGA-----GTA---TAANATGGAAGGACTGACAGGAC--CTGAAA--------A--A-G-CACCAGA------A--TGCACGATTTGGCACTTAGAAA-ACCAAAATTTCCCTAGGGGA-----------------GACCCC---------CCCCCA---------TG-GCGGGANGGGAGACCCC-TCCGGTACTCTTCCCCTCCTCGCAAGCCGCGTGCATTTCCCTGGCCCC-TACCAAACGGT-TTTCCTCGATATGAATTCCTTTCT----GGCT---ACGTCCCTGCTCTTTTTCTTAACAA---A-GACT-----TACA--AGAATGCAG--CATTTGNTTTTCAAAATA-TT-AA-CTTTTTCCGGGGAGNCC---------CCC-----CGTA--CCAGGGAACTCAC-CCA--CCCATAT-CTCCC-CACATCT--TG-CT--CC-C-A--TTGCATGAGGTACCGGGTTTAAAACCCGTTGGAAG---TTC--GT----NTTTTT-AAT-AC-ATC-------TT-----TT--TTTTTTTT-TCTTAATAAAAA-----CGT-------TTAAAA-GTCACAAAATATTGG-------AGT---------CCATA------------TTTTA-TCATA-AAA-T-CTCCC-----GATAATGCAGTAT
Reference ( family-179 ) : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNCACTTGCTCAATCCAACATGCTCCCTCACCTTTTAACTCGCAATCCATGAGGTTCTGGGTTTAAAATATTCGGGAGTACCAGTAAATAACAATCTTTTTTCTCTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAAAACTTNCNAAAATGCAGTATTTGGTTNTTAAGAT-ATNAA-AATGTTCCA-G-GAG-A-GGTCC-CCG---TACCC---CCACCAGC----AG-GGGAT-TCNCCTGAGG-CAAGCGA---ATGTCGTTCCT-GCTGAGTTCTACAATGNACCAGAATGCACGATTTGGCACTAAGAAAAC----CAAAACAATTT--GGGGGANG-CCCC-AAAACACCCCCAGAATTATATTTTTCAGTTTCT---GATCTAAATTCTGATG----TATTTTATACCATTCGA-----GTA---TAANATGGAAGGACTGACAGGAC--CTGAAA--------A--A-G-CACCAGA------A--TGCACGATTTGGCACTTAGAAA-ACCAAAATTTCCCTAGGGGA-----------------GACCCC---------CCCCCA---------TG-GCGGGANGGGAGACCCC-TCCGGTACTCTTCCCCTCCTCGCAAGCCGCGTGCATTTCCCTGGCCCC-TACCAAACGGT-TTTCCTCGATATGAATTCCTTTCT----GGCT---ACGTCCCTGCTCTTTTTCTTAACAA---A-GACT-----TACA--AGAATGCAG--CATTTGNTTTTCAAAATA-TT-AA-CTTTTTCCGGGGAGNCC---------CCC-----CGTA--CCAGGGAACTCAC-CCA--CCCATAT-CTCCC-CACATCT--TG-CT--CC-C-A--TTGCATGAGGTACCGGGTTTAAAACCCGTTGGAAG---TTC--GT----NTTTTT-AAT-AC-ATC-------TT-----TT--TTTTTTTT-TCTTAATAAAAA-----CGT-------TTAAAA-GTCACAAAATATTGG-------AGT---------CCATA------------TTTTA-TCATA-AAA-T-CTCCC-----GATAATGCAGTAT
gi|1 : CACTTGCTCAATCCAACATGCTCCCTCACCTTTTAACTCGCAATCCATGAGGTTCTGGGTTTAAAATATTCGGGAGTACCAGTAAATAACAATCTTTTTTCTCT
gi|1 : tagttcaactgaataattgatataaccacACTTGC-TCAATCCAACATGCTCCCTCACCTTT--TAACT--CG-C-A--ATCCATGAGGTTCTGGGTTTAAAATAT-TCGGGAG---TACCAGT----A------AATAACAATC-------TT-----TT--TTCTCTCTAACTT-GTAAAAATACAGCATACAGTTCTTAAGA--TCACAAAActaacttgtaaaaatacagcatacagttcttaagatcacaaaagtgtccaggtacccccaccagcaggggacaacccctccaagaccaaactgcagtaaatcagacaaccatattctttaatcctgaaaacttttttttctcggggtaggtccccatagccacaccagcaacagatgcgacattttgtaatttgaacaactatttcctctctcaaacttactaaaatgcagtatttgcttattaagatataaacaatattacaaagagaggtcctcgtaccaccaccagcaggggattcccctgagacaacgaatgttgttcttgctcagtttcacaattaaccagaaagcacgacttggcactaagaaaaccaaaacaatttggtgaaagccccaaaacacccccagaattatattttccagtttctgatcttaattctgatgtattttataccatttgagtattaaatcgaaggactgacaggacctgaaaaaatgcacaatttggcacaaatttccctaggggagacccctcccccatagcagaaaggaagacctttccggtactcctcccttcctctcaagccgtgtgtatttccctggccccctaccaaaccgttttcctcgatatgaattcctttctggctgaaatgtctctgctcattttcttaacaaatacttacaagaagcatttcatttttttgtcaaaatatttttccggggaggctttccataccagggaactcacccaccaatatctccccacttcatgctcccattgcgtgaggtactgggtttaaaagccattggaattctgtctttttaatatgtctttttttttttttcttaataaaaaagtttaagttgtcacaaaatattggttcaaggagtaaatgacaaccatattttatcataaaatctccctatataataatacagcatgttccagggatccc
gi|1 : tagttcaactgaataattgatataaccaccAACTTGTAAAAATACAGCATACAGTTCTTAAGATCACAAA-AGTGT-CCA-G-G-----------------TACCC---CCACCAGC----AG-GGGAgtgtccaggtacccccaccagcaggggacaacccctccaagaccaaactgcagtaaatcagacaaccatattctttaatcctgaaaacttttttttctcggggtaggtccccatagccacaccagcaacagatgcgacattttgtaatttgaacaactatttcctctctcaaacttactaaaatgcagtatttgcttattaagatataaacaatattacaaagagaggtcctcgtaccaccaccagcaggggattcccctgagacaacgaatgttgttcttgctcagtttcacaattaaccagaaagcacgacttggcactaagaaaaccaaaacaatttggtgaaagccccaaaacacccccagaattatattttccagtttctgatcttaattctgatgtattttataccatttgagtattaaatcgaaggactgacaggacctgaaaaaatgcacaatttggcacaaatttccctaggggagacccctcccccatagcagaaaggaagacctttccggtactcctcccttcctctcaagccgtgtgtatttccctggccccctaccaaaccgttttcctcgatatgaattcctttctggctgaaatgtctctgctcattttcttaacaaatacttacaagaagcatttcatttttttgtcaaaatatttttccggggaggctttccataccagggaactcacccaccaatatctccccacttcatgctcccattgcgtgaggtactgggtttaaaagccattggaattctgtctttttaatatgtctttttttttttttcttaataaaaaagtttaagttgtcacaaaatattggttcaaggagtaaatgacaaccatattttatcataaaatctccctatataataatacagcatgttccagggatccc
gi|1 : tagttcaactgaataattgatataaccaccacttgctcaatccaacatgctccctcaccttttaactcgcaatccatgaggttctgggtttaaaatattcgggagtaccagtaaataacaatcttttttctctctTTCTC-G-GGGTA-GGTCC-CCA---TAGCC---ACACCAGC----AA-CAGAT-caacccctccaagaccaaactgcagtaaatcagacaaccatattctttaatcctgaaaacttttttttctcggggtaggtccccatagccacaccagcaacagatgcgacattttgtaatttgaacaactatttcctctctcaaacttactaaaatgcagtatttgcttattaagatataaacaatattacaaagagaggtcctcgtaccaccaccagcaggggattcccctgagacaacgaatgttgttcttgctcagtttcacaattaaccagaaagcacgacttggcactaagaaaaccaaaacaatttggtgaaagccccaaaacacccccagaattatattttccagtttctgatcttaattctgatgtattttataccatttgagtattaaatcgaaggactgacaggacctgaaaaaatgcacaatttggcacaaatttccctaggggagacccctcccccatagcagaaaggaagacctttccggtactcctcccttcctctcaagccgtgtgtatttccctggccccctaccaaaccgttttcctcgatatgaattcctttctggctgaaatgtctctgctcattttcttaacaaatacttacaagaagcatttcatttttttgtcaaaatatttttccggggaggctttccataccagggaactcacccaccaatatctccccacttcatgctcccattgcgtgaggtactgggtttaaaagccattggaattctgtctttttaatatgtctttttttttttttcttaataaaaaagtttaagttgtcacaaaatattggttcaaggagtaaatgacaaccatattttatcataaaatctccctatataataatacagcatgttccagggatccc
gi|1 : tagttcaactgaataattgatataaccaccacttgctcaatccaacatgctccctcaccttttaactcgcaatccatgaggttctgggtttaaaatattcgggagtaccagtaaataacaatcttttttctctctaacttgtaaaaatacagcatacagttcttaagatcacaaaagtgtccaggtacccccaccagcaggggacaacccctccaagaccaaactgcagtaaatcagacaaccatattctttaatcctgaaaacttttttAAACTTACTAAAATGCAGTATTTGCTTATTAAGAT-ATAAACAATATTACA-AAGAG-A-GGTCC-TCG---TACCA---CCACCAGC----AG-GGGAT-TCCCCTGAGA-CAA-CGA---ATGTTGTTCTT-GCTCAGTTTCACAATTAACCAGAAAGCACGACTTGGCACTAAGAAAAC----CAAAACAATTT--GGTGAAAG-CCCC-AAAACACCCCCAGAATTATATTTTCCAGTTTCT---GATCTTAATTCTGATG----TATTTTATACCATTTGA-----GTA---TTAAATCGAAGGACTGACAGGAC--CTGAAA--------A--A----------------A--TGCACAATTTGGCAC------------AAATTTCCCTAGGGGA-----------------GACCCCT--------CCCCCA---------TA-GCAGAAAGGAAGACCTT-TCCGGTACTCCTCCCTTCCTCTCAAGCCGTGTGTATTTCCCTGGCCCCCTACCAAACCGT-TTTCCTCGATATGAATTCCTTTCT----GGCTGAAATGTCTCTGCTCATTTTCTTAACAA---A-TACT-----TACA--AGAA-GCATTTCATTTTTTTGTCAAAATA-TT-------TTTCCGGGGAGGCT---------TTC-----CATA--CCAGGGAACTCAC-CCA--CCAATAT-CTCCC-CACTTCA--TG-CT--CC-C-A--TTGCGTGAGGTACTGGGTTTAAAAGCCATTGGAAT---TCT--GT----CTTTTT-AAT-AT-GTC-------TT-----TT--TTTTTTTT-TCTTAATAAAAA-----AGT-------TTAAGTTGTCACAAAATATTGGTTCAAGGAGTAAATGACAACCATA------------TTTTA-TCATA-AAA-T-CTCCCTATATAATAATACAGCATgcgacattttgtaatttgaacaactatttcctctctcaaacttactaaaatgcagtatttgcttattaagatataaacaatattacaaagagaggtcctcgtaccaccaccagcaggggattcccctgagacaacgaatgttgttcttgctcagtttcacaattaaccagaaagcacgacttggcactaagaaaaccaaaacaatttggtgaaagccccaaaacacccccagaattatattttccagtttctgatcttaattctgatgtattttataccatttgagtattaaatcgaaggactgacaggacctgaaaaaatgcacaatttggcacaaatttccctaggggagacccctcccccatagcagaaaggaagacctttccggtactcctcccttcctctcaagccgtgtgtatttccctggccccctaccaaaccgttttcctcgatatgaattcctttctggctgaaatgtctctgctcattttcttaacaaatacttacaagaagcatttcatttttttgtcaaaatatttttccggggaggctttccataccagggaactcacccaccaatatctccccacttcatgctcccattgcgtgaggtactgggtttaaaagccattggaattctgtctttttaatatgtctttttttttttttcttaataaaaaagtttaagttgtcacaaaatattggttcaaggagtaaatgacaaccatattttatcataaaatctccctatataataatacagcatgttccagggatccc
gi|10 : tagttcaactgaataattgatataaccaccacttgctcaatccaacatgctccctcaccttttaactcgcaatccatgaggttctgggtttaaaatattcgggagtaccagtaaataacaatcttttttctctctaacttgtaaaaatacagcatacagttcttaagatcacaaaagtgtccaggtacccccaccagcaggggacaacccctccaagaccaaactgcagtaaatcagacaaccatattctttaatcctgaaaacttttttttctcggggtaggtccccatagccacaccagcaacagatgcgacattttgtaatttgaacaactatttcctctctcA------A--TGCATGGTTTGGTACTTA-AAA-ATGAAAATTTTCA-AGGGGA-----------------GACCCCAC-------CCCCTA---------TT-GCGGGATGGGAGATCCC-TATGGAACTCCTCCTCTCCTCATAAGCCACGTGCATTGCCCTGGCCCC-TTACAATCAGTATTTTCACAATATGAATTCCTTTCT----GGCT---ACTTCCGTACCCTTTTTCTTAACAA---A-GACT-----TACA--AGAATGCAG--CATTTGTTTTTCAAAATA-TTAAA-CTTTTTCCAGGGAGCCC---------CCgttccagggatccc
gi|11 : AAAATA-TTTAA-ATTATTTTGGGG-GTTG---------CCC-----CGTT--CC-------TC---CAA--ATCATCT-CTCCC----ATCCGCTA-TT--TC-C-ACGTTGAATGGGGTATTGGCTTTAAAACCCGGCGAAAT---TTC--GC----ATCTT---AT-AC-ATC-------TTACAACTT--TTTTTTTT-TCTTAATGGTTA-----CAT-------TTAAAA-GTCACAAAATATTGG-------AGT---------AAATAACAACTTTTTGTTTTTATTCA-A-AAA-TACTC--------AGAATGTAGTATacc
gi|12 : tAAAAA-ACTACA--TTTCCTAGGTAA-----------------GACCCCA--------CCCCCACACCCCTTATC-GCAGGAAGGGAGACCCC-TTCGGTACTTTTCCCTTCCTGGTAAGCCGCGTGCATTGCCCTGACCCC-TAACAAACGGT-TTTCCTCAATAGGAATTCCTTTCT----AGCT---ACGTCTCTGTCTTTTTTCTTAACAC---A-GACT------------AAATAAAA--CATTTGttggtattatcaaattttc
gi|13 : GGGGAGATA---------CCC------GTA--CCCGACAACCCCCGCCA--CACACAC-TTCCT-CAC-----------------------GCATAAGATACCGGGTTTGAAACCCGATGGAGG---GTC--GT----CTCTAT-AAT-A--GTT-------TA-----TT--TCTGTTTT-t
gi|14 : TGCTG----CATTTAATACCATTGCA-----GTACAATAACAATGTAGGGCTAACAGCACAACTGAAACGGCTGTTATTA-G-CACGAGATTCGGCACTTGTACGAATCGGCACTTAAAAACATTAAA---TACTTAGTGAA-----------------GACCCC---------CCACCA---------gtgtgtatacgtgtgctgtattgtacgtgtgcgtgtaaatatcaaacgtttgtagtaaccgtgtttcccataaaagactta
gi|15 : TGCTG----CATTTAATACCATTGCA-----GTACAATAACAATGTAGGGCTAACAGCACAACTGAAACGGCTGTTATTA-G-CACGAGATTCGGCACTTGTACGAATCGGCACTTAAAAACATTAAA---TACTTAGTGAA-----------------GACCCC---------CCACCA---------acctgcaaccccaccc
gi|17 : CC-AACATCT--TG-CT--CC-CCA--GTGCATTAGGTATCAAGTATAAA-TCAAATGTAAGCTGTTC--GT------TTTT-AAT-AC-ATCCCATAGGTT-----CTAGTGTTATTT-T------------------T-------TTGAAA-ATTACAAAATATTGG-------Aacctgcaaccccaccc
gi|18 : ACGTCT--CGGCT--CC-T-A--GTGCATGCGGTATCGGGTTTAAAACAAGGCGAA-------C--TT----TTCTTA-AAT-AA-ATC-------TT-----TT--TTTTTCT----TTAA-AAAAA-----TGT-------TTAAA
gi|19 : ccatcaccacgtT-TTCCC-GTCGCCT--TG-CT--TTTC-A--TTGCATGAGGTAACGGATCTGATACCCAATAGAGG---CTC--AC----TTTTTTAAAT-AT-ATA-------TT-----TT--
gi|2 : cgacatccccttagaacATTTTCGA-G-GAG-A-GGTTG-CCG---TACCC---AAATCAGT----AG-GGGAT-TCACCTGAGGGCAA-CGA---ATGTTGTTCCT-GTTGGGTTCTATAATAAACCAGAATGCACGATTTGTCACGAAGATAAC------AAACAA----------AAA------AAAACACCCCTAGAATTATATTTTTCAGCTTCT---CATCAAAGTTCTGATG----TATTTTATACATTTCGA-----GTA---TAAGATGGAAGGAATGACAGGAC--CTGAAA--------A--ATG-CACCAAA------A--TGCACGATTTTGCACTTAGAAA-AACAAAATTT-CCTA-TGGA-----------------GA-CCC---------CCTCCA---------TG-GCAAAAAGGGAGACCGC-TTCGGTACTCTTTCCCTCCTCGAAAGCCGCGTGCATTT-CCTGGCCCC--AGCAAACGGT-TTTCCTCGATATAAATTCCTTTCT----GGCT---ACGTCAGAA-----------AACAA---A-ACCT-----TACA--AGAATGCAG--CATTTGATTTTCGAAATG-TTAAA-CTTTTTTCGGAGAGG-C---------CCC-----CGCA--CCA-------TA---CA--CCCATAT--GCCC-CGCCTCT--TG--TAACC-C-A--TTGCTTAAGGTACCGGGTTTCAAACCCGTTGAGAG---TTC--AT----ATATTT-AAT-AT-ATC--------------TT--ATATTTTT-TCTTAAAAAAAA-----CAT-------TTAAAA-GTC
gi|20 : GCAGTATTTAGTGTTTAAGAT-ATCAA-AATGTCCCACA-GCC-A-GCTTC-CTG-----CCC---CCA-TAGC----AGCGGGA
gi|21 : TCTCTA-CCTC-TAACAAACTGT-TTTGTCTGTTATGATTTCCTTTTT----GACT---ACGTCCCTGCacccc
gi|3 : tgACTAAA------A--TGCACGCTTTGGCACTAAGAGG-ACCAAAATTTCAC-AGGGG----------------------CT---------CCACTA---------TG-ACGAGATTGGAGACCCC-TCCAGTACTCTTCACTTTCTCGCAAGCCACGTGCTTTTCGCTGGCCCC-TACCAAACGTT-TTATTTCGATATGAATTCCTTTCT----TGAT---ACATCCCTGCTCTTTTTCTTAACTA---A-AACA-----AAAATTAGAATGCAT--CGTTTGGTTTTTAAAACATTT-AA-CTTTTTCCGGGGAGCCC---------CCTCCCCACATA--CCAGGGAGCTCAA-CCT--CCCATAC-CTCCC-CACATCT--TG-CT--CC-C-A--TTGCATGAGGTACCGGATTTAAAACCCGTTGGAAG---TTC--AT----TTTTTT-AAT-AC-A-----------------------------TCTTAATAAAAA-----TAT-------TTAAAA-GTCACAAAATATTGG-------AGT-----------ATA------------TTTTA-TCATA-AAA-T-CTCCC-----GATAATGCAGTAT
gi|3 : AAAATCTCCCGATAATGCAGTATTTGG-TATTAAGAT-ATCAA-ACTGTTCCA---GAG-ACCATCCACCGCTTTACCCCATCCACCAGCGGGAAG-GGTATATTTCCTGAttggtattaagatatcaaactgttccagagaccatccaccgctttaccccatccaccagcgggaagggtatatttcctgatacattctcttctcatgtcggctccgaaataacttaaacgctcctactacgcccatgaagttgtgttatat
gi|4 : actaaaatgcacgctttggcactaagaggaccaaaatttcacaggggctccactatgacgagattggagacccctccagtactcttcactttctcgcaagccacgtgcttttcgctggcccctaccaaacgttttatttcgatatgaattcctttcttgatacatccctgctctttttcttaactaaaacaaaaattagaatgcatcgtttggtttttaaaacatttaactttttccggggagccccctccccacataccagggagctcaacctcccatacctccccacatcttgctcccattgcatgaggtaccggatttaaaacccgttggaagttcatttttttaatacatcttaataaaaatatttaaaagtcacaaaatattggagtatattttatcatG-CAA-CGA---ATGTCGTTCCT-GCTGGACTCTACAATGAACCAGAATGCACGATTTGGCACTAATAAAACAAAACAAAAAAAT----AGGGGATGTCCCC-AAAACACCCCCAAAATTACAATTTTCAGTTTCT---GATCTAAATTCTGATGGATGTATCTAATACCACTAGAATAGAGTA---TGAAATGAAAGGAATGACAGGAA--CGGAAA--------A--A-GGCATCCGA------A--TATCCGTTTTGAAACCTAGGAA-ACCAA----CTCCTCGGGGA-----------------GACACC---------AACCTA---------TG-GCGGGATGGGAGACCCAGTCCGGTACTCTTCCCCTCCTCGCAAGCCGCGTGCATTTCCCTGGTCCC-TACCAAACGGT-ATTCCTCGATGTGAACTCCTTTTTCAGTGGCT---ATGTCCCTACTCTGTTTCTTTACAA---A-AACT-----TTCA--AGAATGCAG--CATTCGA----------A-TT-----TTTTTTCGGGGAAACC---------CC------CGTA--CCAGGGAATTCAC-CCA--CTCATAT-CCACC-CACATAT--TG-CT--CC-C-A--TTGCATGAGGTACCGGGTTTAAAACCCATTGTAAG---TTC--G-----GGTTTA-AAT-AC-ATC-------TT-----TT--TTTTCTtacattctcttctcatgtcggctccgaaataacttaaacgctcctactacgcccatgaagttgtgttatat
gi|5 : GCTCTATAATGAACCAAAATACACTTTTTGGCACTAAAAAA------CAAAGTAATTT--GGGGGAGG-CCCCCAAAACATCCCCAGAATTATATTTTTCATTTTTTTTTG-TCGAAATTCTGATG----AATTTTATACCATTCTA-----ATA---TAATATGAAAGGACTGACAGGAC--CTGGAA--------A--ATG-CACCAAA------A--TGCACGATTTGGCACTTAAAAA-CCCAAAATTTCC-TAGGGAATACCCCCCCCCCCCCCCGACCCCACCCCACACCCTCCA---------TAAGTAGGAAAGGAGACTC--TACAGTACTCTTCCCCTCCTCGCAAGACGTGTGCATTTCCCTGACCCC-TACCAAACGGT-TTTGCTTGATATGAAATCCTTTCT----GGCT---ACGTCCCTGCTCTTTAACTTAACAACTCATGACTTATCGTATA--AGAATGCAG--CATTTGCTGTT---------------TTTTTCCGGGGAGG-C---------CCC-----AGTA--TCAGGCAACTCAT-CCA--CCCATAT-CTCCC-C-CATCT--TG-CT--CC-A-A--CTGCATGAGCTACCGGTTTTAAAACCTGTTGGAAG---TT
gi|6 : gTTTCT---GATCTAAATACTGATG----TATTTTATACCATTCGA-----GTA---AAACATGGAAGGACTGACAGGAC--CTGAAA--------A--A-GGCACCAAA------A--CACACGACTTGACACTTAGAAA-ACCAAAATGTCA-TAGGAAA-----------------GACCTA---------C----A---------TG-GCGGGACGGGAAACCCT-TCCGGTACTC-----------GCAAGCCTCTTGCATTTCCTTGGCACC-TACCAAACTAT-TTCCCTTGATATGAATTCCTTTCT----GACT---ACGTCC-TGCTCTTTATTTTAACAA---A-ATCT-----TACA--ATAATGCGA--CATTTGGTTTTCAAAATA-TT-AAACTTTTTCCGAAGAGTCCTTTCCTTTACCC-----CGTATACCAGGGAACTCAC-CCA--CCCATAT-CTCCC-CACATCT--TG-CT--TC-C-A--TTGCATGAGGTACCTGATTT-AAACCCGTTCGACG---TTC--GTTTGGTTTTTT-AAT-AC-ATC-------TTA----TT--TTTTTTAT-TC---ATAAAAA-----GCTA------TTAAGA-GTCACAAAATATTGG--------TC---------CCATA------------TTCAA-TCATATAGACT-CTCCC-----
gi|7 : acGA---ATGTCATTCAT-GTTGGGTTCTAC
gi|7 : tatgaaacacaaccaagaaattgcttccctgaagaaaaatcatccagagagagcattttttggtagtgagggcataGCCA---ATG--GTTCTTAGCT----TCTACCATATACCAGAATGCACGATTTCACATAAAGAAAAT----CAAAAT--TTTCAGGGGGATG-TCCC-CAAACATCTATAAAATTCTATTTTTCAGATTCT---GGTCTTAAT--TGATG----TAATTTATACAATTCCA-----GTA---TAAAAAGGTAGGGCTGACTGCAC--CTGGAA--------A--cagtgacttaataaaatggatatgccaatggttcttagcttctaccatataccagaatgcacgatttcacataaagaaaatcaaaattttcagggggatgtccccaaacatctataaaattctatttttcagattctggtcttaattgatgtaatttatacaattccagtataaaaaggtagggctgactgcacctggaaaccagtagtacagtt
gi|8 : tatgaaacacaaccaagaaattgcttccctgaagaaaaatcatccagagagagcattttttggtagtgagggcatagaatgtcattcatgttgggttctaccagtgacttaataaaatggatatG-TAAGTGACTTATGTCATTACT-GCTAAGTTCTACGGTGCAACAGAATACACAATTTGGCACTTAGAAAAC----CAAAccagtagtacagtt
gi|8 : taaatgatttaaatatgaatttaacactccgaggaaacaattttgggtagtTGAGG-AAAGCGA---ATGTCATTCTT-GCTGAATACTACAAATCACTAGAATGCACGATATAGCACTtatctccaaataaaatacctcaaatatatacgtcaaattccactaaagtggctaccctgaaaaatgtgaaggaacattttgttgtaatgaggaaagcgaatgtcattcttgctgaatactacaaatcactagaatgcacgatatagcactttt
gi|9 : taaatgatttaaatatgaatttaacactccgaggaaacaattttgggtagtgtaagtgacttatgtcattactgctaagttctacggtgcaacagaatacacaatttggcacttagaaaaccaaatatctccaaataaaatacctcaaatatatacgtcaaattccactaaagtggctaccctgaaaaatgtgaaggaacattttgttgtaaG-TAAGTGACTTATGTCATTACT-GCTAAGTTCTACGGTGCAACAGAATACACAATTTGGCACTTAGAAAAC----CAAAttt
gi|9 : taaatgatttaaatatgaatttaacactccgaggaaacaattttgggtagtTGAGG-AAAGCGA---ATGTCATTCTT-GCTGAATACTACAAATCACTAGAATGCACGATATAGCACTtatctccaaataaaatacctcaaatatatacgtcaaattccactaaagtggctaccctgaaaaatgtgaaggaacattttgttgtaatgaggaaagcgaatgtcattcttgctgaatactacaaatcactagaatgcacgatatagcactttt
blockSeqs : A T T A . A C T GAGACCATCCACCGCTT CAT C GGGA C A A GC G CTT A G AA AAAA CA TTTCA A TC C TTT A T GATG GC ATAGA CAA C AA CGGCTGTTATTAGCACGAGATTCGGCACT A C ATT T CT TACCCCCCCCCCCCCCC ACCCCACAC C CACCCCTTA AA T AG . A A CAGT . G CTC TG TATCGT TT G T C T AAAC TCCTTTCCTTTA CCCCA TA C CCG . . . T GC G AA T C CGT T CTG . TTGGT TA . T CCATAGGTT AG . A T GCTA T AGTAAATAACAACTTTTTGT T T T TA C G
blockSeqs : C G T T . C . T GGGGTAGGTCCCCA . C . . . T C G CTT . G GA . AA TTT T C . . A T . GC . CAA C AA CGGCTGTTATTAGCACGAGATTCGGCACT A C ATT T TT . AC C . T A C . A . . . C . G T . A A C . TAAA CCC . . G AC . . . A . . . . . T G . . C T . C TTACAAC . . A T AGT . TCCCATA . T . CT C .
blockSeqs : . A . C . T AAGAGAGGTCCTCG . T . . . T G . . G GA . TA T G T . . A T . CG . . G . AATGCACCAAAA A . ATT A TT . A A . C A C . G . . . G . G T . G G T . AAAC TTG . . G AA . . . A . . . . . G A . . A T . C TTA . . A A CAT . AGTATA . . . T .
blockSeqs : C CAGCCAGCTTCCTG . C . . A G . . A AT . T . T . . . G A . AG . . A . AAGGCATCCGAA G . ATT A CT . . A . G T C . A . . . C . A A . T A C . AAAC ATA . . C AC . . . G . . . . . G A . . C T . A TT . . A T TGT .
blockSeqs : T GGAGAGGTTGCCG . . . . T G . . G GC . . . . . CT . . T . AATGCACCAAAA G . ATG C CT . . T . G T C . C . . . C . A T . G C . . AAC CCC . . G AT . . . G . . . . . T G . . T A . T TA . . A T CAT .
blockSeqs : A . . . A TC . . CG . . C . AAGGCACCAAAA G . T T A . . A . G A T . C . . . C . A T . G G . . . ACC . . . AC . . . C . . . . . T A . . T T . T TT . . . . TAT .
blockSeqs : . . . G GC . CC . . A . A . . C C . . C . G C . . C . . . C . A . . A . . GC . . . A . . . A . . . . . T T . . A T . C TT . . . . T
blockSeqs : . . . TC G . . C T . . T . . C . . . . GC . . . . A . . . . . T T . . T A . C TT . .
blockSeqs : . . . . T . . . . . . A . . . . . C T . . G T . C . .
blockSeqs : . A . . . . . T T . . . . . . . .
blockSeqs : . . . . . . . T .
blockSeqCons : NAGNNAGGTCCCCG******* T**** AANGCACCAAAA******************* ********* *** G** AAAC* ** ** T* C* CGT************
originalCons : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNCACTTGCTCAATCCAACATGCTCCCTCACCTTTTAACTCGCAATCCATGAGGTTCTGGGTTTAAAATATTCGGGAGTACCAGTAAATAACAATCTTTTTTCTCTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAAAACTTNCNAAAATGCAGTATTTGGTTNTTAAGAT-ATNAA-AATGTTCCA-G-GAG-A-GGTCC-CCG---TACCC---CCACCAGC----AG-GGGAT-TCNCCTGAGG-CAAGCGA---ATGTCGTTCCT-GCTGAGTTCTACAATGNACCAGAATGCACGATTTGGCACTAAGAAAAC----CAAAACAATTT--GGGGGANG-CCCC-AAAACACCCCCAGAATTATATTTTTCAGTTTCT---GATCTAAATTCTGATG----TATTTTATACCATTCGA-----GTA---TAANATGGAAGGACTGACAGGAC--CTGAAA--------A--A-G-CACCAGA------A--TGCACGATTTGGCACTTAGAAA-ACCAAAATTTCCCTAGGGGA-----------------GACCCC---------CCCCCA---------TG-GCGGGANGGGAGACCCC-TCCGGTACTCTTCCCCTCCTCGCAAGCCGCGTGCATTTCCCTGGCCCC-TACCAAACGGT-TTTCCTCGATATGAATTCCTTTCT----GGCT---ACGTCCCTGCTCTTTTTCTTAACAA---A-GACT-----TACA--AGAATGCAG--CATTTGNTTTTCAAAATA-TT-AA-CTTTTTCCGGGGAGNCC---------CCC-----CGTA--CCAGGGAACTCAC-CCA--CCCATAT-CTCCC-CACATCT--TG-CT--CC-C-A--TTGCATGAGGTACCGGGTTTAAAACCCGTTGGAAG---TTC--GT----NTTTTT-AAT-AC-ATC-------TT-----TT--TTTTTTTT-TCTTAATAAAAA-----CGT-------TTAAAA-GTCACAAAATATTGG-------AGT---------CCATA------------TTTTA-TCATA-AAA-T-CTCCC-----GATAATGCAGTAT
finalCons : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNCACTTGCTCAATCCAACATGCTCCCTCACCTTTTAACTCGCAATCCATGAGGTTCTGGGTTTAAAATATTCGGGAGTACCAGTAAATAACAATCTTTTTTCTCTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAAAACTTNCNAAAATGCAGTATTTGGTTNTTAAGAT-ATNAA-AATGTTCCANAGNNAGGTCCCCG-------TACCC---CCACCAGC----AG-GGGAT-TCNCCTGAGG-CAAGCGA---ATGTCGTTCCT-GCTGAGTTCTACAATGNACCAGAATGCACGATTTGGCACTAAGAAAAC----CAAAACAAT----GGGGGANG-CCCC-AAAACACCCCCAGAATTATATTTTTCAGTTTCT---GATCTAAATTCTGATG----TATTTTATACCATTCGA-----GTA---TAANATGGAAGGACTGACAGGAC--CTGAAAAANGCACCAAAA-------------------TGCACGATTTGGCACTTAGAAA-ACCAAAATTTCCCTAGGGGA-----------------GACCCC---------CCCCCA---------TG-GCGGGANGGGAGACCCC-TCCGGTACTCTTCCCCTCCTCGCAAGCCGCGTGCATTTCCCTGGCCCC-TACCAAACGGT-TTTCCTCGATATGAATTCCTTTCT----GGCT---ACGTCCCTGCTCTTTTTCTTAACAA---A-GACT-----TACA--AGAATGCAG--CATTTGNTTTTCAAAATA-TTAAAC-TTTTTCCGGGGAGNCC---------CCC-----CGTA--CCAGGGAACTCAC-CCA--CCCATAT-CTCCC-CACATCT--TG-CT--CC-C-A--TTGCATGAGGTACCGGGTTTAAAACCCGTTGGAAG---TTC--GT----NTTTTT-AAT-AC-ATC-------TT-----TT--TTTTTTTT-TCTTAATAAAAACGT------------TTAAAA-GTCACAAAATATTGG-------AGT---------CCATA------------TTTTA-TCATA-AAA-T-CTCCC-----GATAATGCAGTAT
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|16 ): TTTTTTTCTTGATATTACGTAAAAACGACACAAAATATCTGAGCAAATAGCAAGCATTCTCCATAAAACGTATTAAAATGCAGCATTTTGATTTTATCATAATTTTTCCCGTAACTCCACCTTCAGTGGACACCCTCTCT
Alignments
lowQualScore : 11 1 1 2222222222222222 111 1111 1 111 1111 3333333333 11 111 1111 11111 111 11 5555555555 222222222 11111 33333333333333333333333333333333 111111111 111111 1111 222222222222 111111111 111111111 11111111111111 333333333333333 999999999999999999999999999999999999 1 1 111 222222
lowQualScore : 1 1 00 0 1 0 0 3 44 2222222222222222 444 3 7777 8 3 1 77 8 555 4 1 22 2222 4444444444 1 11 8 111 1 3 0000 0 33 22222 777 1 0 0 33 2222222222 1 888888888 3 8 11111 44 00000000000000000000000000000000 2 666666666 55 1 88 0 4 1 0 4 9999 777 0 888 66 222222 66 777 1 3 5555 666666666666 222222222 0 2 888 66 4 3 0 3 44 6 77 3 555 3 1 555 444444444 66 3 44 99999999999999 55 4 0 3 3 222222222222222 5 333333333333333333333333333333333333 0 3 0 111 2 888888
lowQualScore : . . .. . . . . . .. ................ ... . .... . . . .. . ... . . .. .... .......... . .. . ... . . .... . .. ..... ... . . . .. .......... . ......... . . ..... .. ................................ . ......... .. . .. . . . . . .... ... . ... .. ...... .. ... . . .... ............ ......... . . ... .. . . . . .. . .. . ... . . ... ......... .. . .. .............. .. . . . . ............... . .................................... . . . ... . ......
lowQualScore : 0 0 22 0 0 0 8 8 88 8888888888888888 000 2 0000 0 3 0 44 8 666 4 9 99 1111 6666666666 0 22 0 777 7 5 6666 8 99 55555 555 0 8 8 88 3333333333 4 888888888 9 0 66666 00 00000000000000000000000000000000 3 000000000 22 0 44 2 4 1 1 4 4444 888 5 888 11 999999 99 111 0 0 2222 333333333333 888888888 1 5 111 11 0 6 5 8 66 7 99 3 000 7 5 888 333333333 00 6 88 99999999999999 00 4 1 1 4 444444444444444 7 333333333333333333333333333333333333 0 2 0 000 5 777777
consensus : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNCACTTGCTCAATCCAACATGCTCCCTCACCTTTTAACTCGCAATCCATGAGGTTCTGGGTTTAAAATATTCGGGAGTACCAGTAAATAACAATCTTTTTTCTCTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAAAACTTNCNAAAATGCAGTATTTGGTTNTTAAGAT-ATNAA-AATGTTCCAGAGANAGGTCC-CCG---TACCC---CCACCAGC----AG-GGGAT-TCNCCTGAGG-CAAGCGA---ATGTCGTTCCT-GCTGAGTTCTACAATGNACCAGAATGCACGATTTGGCACTAAGAAAAC----CAAAA----CAATTTGGGGGANG-CCCC-AAAACACCCCCAGAATTATATTTTTCAGTTTCT---GATCTAAATTCTGATG----TATTTTATACCATTCGA-----GTA---TAANATGGAAGGACTGACAGGAC--CTGAAAAAG---------GCACCAGA------A--TGCACGATTTGGCACTTAGAAA-ACCAAAATTTCCCTAGGGGA-----------------GACCCC---------CCCCCA---------TG-GCGGGANGGGAGACCCC-TCCGGTACTCTTCCCCTCCTCGCAAGCCGCGTGCATTTCCCTGGCCCC-TACCAAACGGT-TTTCCTCGATATGAATTCCTTTC----TGGCT---ACGTCCCTGCTCTTTTTCTTAACAA---A-GACT-----TACA--AGAATGCAG--CATTTGNTTTTCAAAATATT-AACTTTTTCCGGGGAGNCC---------CCC-----CG--TACCAGGGAACTCAC-CCA--CCCATAT-CTCCC-CACATCT--TG-CT--CC-CA--TTGCATGAGGTACCGGGTTTAAAACCCGTTGGAA---GTTC--GT----NTTTTT-AAT-AC-ATC-------TT-----TT--TTTTTTTT-TCTTAATAAAAA-----CGT-------TTAAAA-GTCACAAAATATTGG-------AGT---------CCATA------------TTTTA-TCATA-AAA-T-CTCCC-----GATAATGCAGTAT
Reference ( family-179 ) : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNCACTTGCTCAATCCAACATGCTCCCTCACCTTTTAACTCGCAATCCATGAGGTTCTGGGTTTAAAATATTCGGGAGTACCAGTAAATAACAATCTTTTTTCTCTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAAAACTTNCNAAAATGCAGTATTTGGTTNTTAAGAT-ATNAA-AATGTTCCANAGNNAGGTCC-CCG---TACCC---CCACCAGC----AG-GGGAT-TCNCCTGAGG-CAAGCGA---ATGTCGTTCCT-GCTGAGTTCTACAATGNACCAGAATGCACGATTTGGCACTAAGAAAAC----CAAAA----CAAT--GGGGGANG-CCCC-AAAACACCCCCAGAATTATATTTTTCAGTTTCT---GATCTAAATTCTGATG----TATTTTATACCATTCGA-----GTA---TAANATGGAAGGACTGACAGGAC--CTGAAAAAN---------GCACCAAA------A--TGCACGATTTGGCACTTAGAAA-ACCAAAATTTCCCTAGGGGA-----------------GACCCC---------CCCCCA---------TG-GCGGGANGGGAGACCCC-TCCGGTACTCTTCCCCTCCTCGCAAGCCGCGTGCATTTCCCTGGCCCC-TACCAAACGGT-TTTCCTCGATATGAATTCCTTTC----TGGCT---ACGTCCCTGCTCTTTTTCTTAACAA---A-GACT-----TACA--AGAATGCAG--CATTTGNTTTTCAAAATATTAAACTTTTTCCGGGGAGNCC---------CCC-----CG--TACCAGGGAACTCAC-CCA--CCCATAT-CTCCC-CACATCT--TG-CT--CC-CA--TTGCATGAGGTACCGGGTTTAAAACCCGTTGGAA---GTTC--GT----NTTTTT-AAT-AC-ATC-------TT-----TT--TTTTTTTT-TCTTAATAAAAA-----CGT-------TTAAAA-GTCACAAAATATTGG-------AGT---------CCATA------------TTTTA-TCATA-AAA-T-CTCCC-----GATAATGCAGTAT
gi|1 : CACTTGCTCAATCCAACATGCTCCCTCACCTTTTAACTCGCAATCCATGAGGTTCTGGGTTTAAAATATTCGGGAGTACCAGTAAATAACAATCTTTTTTCTCT
gi|1 : tagttcaactgaataattgatataaccacACTTGC-TCAATCCAACATGCTCCCTCACCTTT--TAACT--CG-CA--ATCCATGAGGTTCTGGGTTTAAAATAT-TCGGGA---GTACCAGT----A------AATAACAATC-------TT-----TT--TTCTCTCTAACTT-GTAAAAATACAGCATACAGTTCTTAAGA--TCACAAAActaacttgtaaaaatacagcatacagttcttaagatcacaaaagtgtccaggtacccccaccagcaggggacaacccctccaagaccaaactgcagtaaatcagacaaccatattctttaatcctgaaaacttttttttctcggggtaggtccccatagccacaccagcaacagatgcgacattttgtaatttgaacaactatttcctctctcaaacttactaaaatgcagtatttgcttattaagatataaacaatattacaaagagaggtcctcgtaccaccaccagcaggggattcccctgagacaacgaatgttgttcttgctcagtttcacaattaaccagaaagcacgacttggcactaagaaaaccaaaacaatttggtgaaagccccaaaacacccccagaattatattttccagtttctgatcttaattctgatgtattttataccatttgagtattaaatcgaaggactgacaggacctgaaaaaatgcacaatttggcacaaatttccctaggggagacccctcccccatagcagaaaggaagacctttccggtactcctcccttcctctcaagccgtgtgtatttccctggccccctaccaaaccgttttcctcgatatgaattcctttctggctgaaatgtctctgctcattttcttaacaaatacttacaagaagcatttcatttttttgtcaaaatatttttccggggaggctttccataccagggaactcacccaccaatatctccccacttcatgctcccattgcgtgaggtactgggtttaaaagccattggaattctgtctttttaatatgtctttttttttttttcttaataaaaaagtttaagttgtcacaaaatattggttcaaggagtaaatgacaaccatattttatcataaaatctccctatataataatacagcatgttccagggatccc
gi|1 : tagttcaactgaataattgatataaccaccAACTTGTAAAAATACAGCATACAGTTCTTAAGATCACAAA-AGTGT-CCAG-------------G---TACCC---CCACCAGC----AG-GGGAgtgtccaggtacccccaccagcaggggacaacccctccaagaccaaactgcagtaaatcagacaaccatattctttaatcctgaaaacttttttttctcggggtaggtccccatagccacaccagcaacagatgcgacattttgtaatttgaacaactatttcctctctcaaacttactaaaatgcagtatttgcttattaagatataaacaatattacaaagagaggtcctcgtaccaccaccagcaggggattcccctgagacaacgaatgttgttcttgctcagtttcacaattaaccagaaagcacgacttggcactaagaaaaccaaaacaatttggtgaaagccccaaaacacccccagaattatattttccagtttctgatcttaattctgatgtattttataccatttgagtattaaatcgaaggactgacaggacctgaaaaaatgcacaatttggcacaaatttccctaggggagacccctcccccatagcagaaaggaagacctttccggtactcctcccttcctctcaagccgtgtgtatttccctggccccctaccaaaccgttttcctcgatatgaattcctttctggctgaaatgtctctgctcattttcttaacaaatacttacaagaagcatttcatttttttgtcaaaatatttttccggggaggctttccataccagggaactcacccaccaatatctccccacttcatgctcccattgcgtgaggtactgggtttaaaagccattggaattctgtctttttaatatgtctttttttttttttcttaataaaaaagtttaagttgtcacaaaatattggttcaaggagtaaatgacaaccatattttatcataaaatctccctatataataatacagcatgttccagggatccc
gi|1 : tagttcaactgaataattgatataaccaccacttgctcaatccaacatgctccctcaccttttaactcgcaatccatgaggttctgggtttaaaatattcgggagtaccagtaaataacaatcttttttctctctAAACTTACTAAAATGCAGTATTTGCTTATTAAGAT-ATAAACAATATTACAAAGAGAGGTCC-TCG---TACCA---CCACCAGC----AG-GGGAT-TCCCCTGAGA-CAA-CGA---ATGTTGTTCTT-GCTCAGTTTCACAATTAACCAGAAAGCACGACTTGGCACTAAGAAAAC----CAAAA----CAATTTGGTGAAAG-CCCC-AAAACACCCCCAGAATTATATTTTCCAGTTTCT---GATCTTAATTCTGATG----TATTTTATACCATTTGA-----GTA---TTAAATCGAAGGACTGACAGGAC--CTGAAAAA------------------------A--TGCACAATTTGGCAC------------AAATTTCCCTAGGGGA-----------------GACCCCT--------CCCCCA---------TA-GCAGAAAGGAAGACCTT-TCCGGTACTCCTCCCTTCCTCTCAAGCCGTGTGTATTTCCCTGGCCCCCTACCAAACCGT-TTTCCTCGATATGAATTCCTTTC----TGGCTGAAATGTCTCTGCTCATTTTCTTAACAA---A-TACT-----TACA--AGAA-GCATTTCATTTTTTTGTCAAAATATT------TTTCCGGGGAGGCT---------TTC-----CA--TACCAGGGAACTCAC-CCA--CCAATAT-CTCCC-CACTTCA--TG-CT--CC-CA--TTGCGTGAGGTACTGGGTTTAAAAGCCATTGGAA---TTCT--GT----CTTTTT-AAT-AT-GTC-------TT-----TT--TTTTTTTT-TCTTAATAAAAA-----AGT-------TTAAGTTGTCACAAAATATTGGTTCAAGGAGTAAATGACAACCATA------------TTTTA-TCATA-AAA-T-CTCCCTATATAATAATACAGCATcaacccctccaagaccaaactgcagtaaatcagacaaccatattctttaatcctgaaaacttttttttctcggggtaggtccccatagccacaccagcaacagatgcgacattttgtaatttgaacaactatttcctctctcaaacttactaaaatgcagtatttgcttattaagatataaacaatattacaaagagaggtcctcgtaccaccaccagcaggggattcccctgagacaacgaatgttgttcttgctcagtttcacaattaaccagaaagcacgacttggcactaagaaaaccaaaacaatttggtgaaagccccaaaacacccccagaattatattttccagtttctgatcttaattctgatgtattttataccatttgagtattaaatcgaaggactgacaggacctgaaaaaatgcacaatttggcacaaatttccctaggggagacccctcccccatagcagaaaggaagacctttccggtactcctcccttcctctcaagccgtgtgtatttccctggccccctaccaaaccgttttcctcgatatgaattcctttctggctgaaatgtctctgctcattttcttaacaaatacttacaagaagcatttcatttttttgtcaaaatatttttccggggaggctttccataccagggaactcacccaccaatatctccccacttcatgctcccattgcgtgaggtactgggtttaaaagccattggaattctgtctttttaatatgtctttttttttttttcttaataaaaaagtttaagttgtcacaaaatattggttcaaggagtaaatgacaaccatattttatcataaaatctccctatataataatacagcatgttccagggatccc
gi|10 : tagttcaactgaataattgatataaccaccacttgctcaatccaacatgctccctcaccttttaactcgcaatccatgaggttctgggtttaaaatattcgggagtaccagtaaataacaatcttttttctctctaacttgtaaaaatacagcatacagttcttaagatcacaaaagtgtccaggtacccccaccagcaggggacaacccctccaagaccaaactgcagtaaatcagacaaccatattctttaatcctgaaaacttttttttctcggggtaggtccccatagccacaccagcaacagatgcgacattttgtaatttgaacaactatttcctctctcA------A--TGCATGGTTTGGTACTTA-AAA-ATGAAAATTTTCA-AGGGGA-----------------GACCCCAC-------CCCCTA---------TT-GCGGGATGGGAGATCCC-TATGGAACTCCTCCTCTCCTCATAAGCCACGTGCATTGCCCTGGCCCC-TTACAATCAGTATTTTCACAATATGAATTCCTTTC----TGGCT---ACTTCCGTACCCTTTTTCTTAACAA---A-GACT-----TACA--AGAATGCAG--CATTTGTTTTTCAAAATATTAAACTTTTTCCAGGGAGCCC---------CCgttccagggatccc
gi|11 : AAAATATTTAAATTATTTTGGGG-GTTG---------CCC-----CG--TTCC-------TC---CAA--ATCATCT-CTCCC----ATCCGCTA-TT--TC-CACGTTGAATGGGGTATTGGCTTTAAAACCCGGCGAAA---TTTC--GC----ATCTT---AT-AC-ATC-------TTACAACTT--TTTTTTTT-TCTTAATGGTTA-----CAT-------TTAAAA-GTCACAAAATATTGG-------AGT---------AAATAACAACTTTTTGTTTTTATTCA-A-AAA-TACTC--------AGAATGTAGTATacc
gi|12 : tAAAAA-ACTACA--TTTCCTAGGTAA-----------------GACCCCA--------CCCCCACACCCCTTATC-GCAGGAAGGGAGACCCC-TTCGGTACTTTTCCCTTCCTGGTAAGCCGCGTGCATTGCCCTGACCCC-TAACAAACGGT-TTTCCTCAATAGGAATTCCTTTC----TAGCT---ACGTCTCTGTCTTTTTTCTTAACAC---A-GACT------------AAATAAAA--CATTTGttggtattatcaaattttc
gi|13 : GGGGAGATA---------CCC------G--TACCCGACAACCCCCGCCA--CACACAC-TTCCT-CAC----------------------GCATAAGATACCGGGTTTGAAACCCGATGGAG---GGTC--GT----CTCTAT-AAT-A--GTT-------TA-----TT--TCTGTTTT-t
gi|14 : TGCTG----CATTTAATACCATTGCA-----GTACAATAACAATGTAGGGCTAACAGCACAACTGAAACGGCTGTTATTAGCACGAGATTCGGCACTTGTACGAATCGGCACTTAAAAACATTAAA---TACTTAGTGAA-----------------GACCCC---------CCACCA---------gtgtgtatacgtgtgctgtattgtacgtgtgcgtgtaaatatcaaacgtttgtagtaaccgtgtttcccataaaagactta
gi|15 : TGCTG----CATTTAATACCATTGCA-----GTACAATAACAATGTAGGGCTAACAGCACAACTGAAACGGCTGTTATTAGCACGAGATTCGGCACTTGTACGAATCGGCACTTAAAAACATTAAA---TACTTAGTGAA-----------------GACCCC---------CCACCA---------acctgcaaccccaccc
gi|17 : CC-AACATCT--TG-CTC-CC-CA--GTGCATTAGGTATCAAGTAT-AAATCAAATGTAAGCTGTTC--G------TTTTT-AAT-AC-ATCCCATAGGTT-----CTAGTGTTATTT-T------------------T-------TTGAAA-ATTACAAAATATTGG-------Aacctgcaaccccaccc
gi|18 : ACGTCT--CGGCT--CC-TA--GTGCATGCGGTATCGGGTTTAAAACAAGGCGAA-------C--TT----TTCTTA-AAT-AA-ATC-------TT-----TT--TTTTTCT----TTAA-AAAAA-----TGT-------TTAAA
gi|19 : ccatcaccacgtT-TTCCC-GTCGCCT--TG-CT--TTTCA--TTGCATGAGGTAACGGATCTGATACCCAATAGAG---GCTC--AC----TTTTTTAAAT-AT-ATA-------TT-----TT--
gi|2 : cgacatccccttagaacTTTCGAGGAGAGGTTG-CCG---TACCC---AAATCAGT----AG-GGGAT-TCACCTGAGGGCAA-CGA---ATGTTGTTCCT-GTTGGGTTCTATAATAAACCAGAATGCACGATTTGTCACGAAGATAAC------AAA----CAA--------AAA------AAAACACCCCTAGAATTATATTTTTCAGCTTCT---CATCAAAGTTCTGATG----TATTTTATACATTTCGA-----GTA---TAAGATGGAAGGAATGACAGGAC--CTGAAAAAT---------GCACCAAA------A--TGCACGATTTTGCACTTAGAAA-AACAAAATTT-CCTA-TGGA-----------------GA-CCC---------CCTCCA---------TG-GCAAAAAGGGAGACCGC-TTCGGTACTCTTTCCCTCCTCGAAAGCCGCGTGCATTT-CCTGGCCCC--AGCAAACGGT-TTTCCTCGATATAAATTCCTTTC----TGGCT---ACGTCAGAA-----------AACAA---A-ACCT-----TACA--AGAATGCAG--CATTTGATTTTCGAAATGTTAAACTTTTTTCGGAGAGG-C---------CCC-----CG--CACCA-------TA---CA--CCCATAT--GCCC-CGCCTCT--TG--TAACC-CA--TTGCTTAAGGTACCGGGTTTCAAACCCGTTGAGA---GTTC--AT----ATATTT-AAT-AT-ATC--------------TT--ATATTTTT-TCTTAAAAAAAA-----CAT-------TTAAAA-GTC
gi|20 : atGCAGTATTTAGTGTTTAAGAT-ATCAA-AATGTCCCACAGCCAGCTTC-CTG-----CCC---CCA-TAGC----AGCGGGA
gi|21 : TCTCTA-CCTC-TAACAAACTGT-TTTGTCTGTTATGATTTCCTTTT----TGACT---ACGTCCCTGCacccc
gi|3 : tgACTAAA------A--TGCACGCTTTGGCACTAAGAGG-ACCAAAATTTCAC-AGGGG----------------------CT---------CCACTA---------TG-ACGAGATTGGAGACCCC-TCCAGTACTCTTCACTTTCTCGCAAGCCACGTGCTTTTCGCTGGCCCC-TACCAAACGTT-TTATTTCGATATGAATTCCTTTC----TTGAT---ACATCCCTGCTCTTTTTCTTAACTA---A-AACA-----AAAATTAGAATGCAT--CGTTTGGTTTTTAAAACATTTAACTTTTTCCGGGGAGCCC---------CCTCCCCACA--TACCAGGGAGCTCAA-CCT--CCCATAC-CTCCC-CACATCT--TG-CT--CC-CA--TTGCATGAGGTACCGGATTTAAAACCCGTTGGAA---GTTC--AT----TTTTTT-AAT-AC-A-----------------------------TCTTAATAAAAA-----TAT-------TTAAAA-GTCACAAAATATTGG-------AGT-----------ATA------------TTTTA-TCATA-AAA-T-CTCCC-----GATAATGCAGTAT
gi|3 : AAAATCTCCCGATAATGCAGTATTTGGT-ATTAAGAT-ATCAA-ACTGTTCCAGAGAC-CATCCACCGCTTTACCCCATCCACCAGCGGGAAG-GGTATATTTCCTGAttggtattaagatatcaaactgttccagagaccatccaccgctttaccccatccaccagcgggaagggtatatttcctgatacattctcttctcatgtcggctccgaaataacttaaacgctcctactacgcccatgaagttgtgttatat
gi|4 : actaaaatgcacgctttggcactaagaggaccaaaatttcacaggggctccactatgacgagattggagacccctccagtactcttcactttctcgcaagccacgtgcttttcgctggcccctaccaaacgttttatttcgatatgaattcctttcttgatacatccctgctctttttcttaactaaaacaaaaattagaatgcatcgtttggtttttaaaacatttaactttttccggggagccccctccccacataccagggagctcaacctcccatacctccccacatcttgctcccattgcatgaggtaccggatttaaaacccgttggaagttcatttttttaatacatcttaataaaaatatttaaaagtcacaaaatattggagtatattttatcatG-CAA-CGA---ATGTCGTTCCT-GCTGGACTCTACAATGAACCAGAATGCACGATTTGGCACTAATAAAACAAAACAAAA----AAAT--AGGGGATGTCCCC-AAAACACCCCCAAAATTACAATTTTCAGTTTCT---GATCTAAATTCTGATGGATGTATCTAATACCACTAGAATAGAGTA---TGAAATGAAAGGAATGACAGGAA--CGGAAAAAG---------GCATCCGA------A--TATCCGTTTTGAAACCTAGGAA-ACCAA----CTCCTCGGGGA-----------------GACACC---------AACCTA---------TG-GCGGGATGGGAGACCCAGTCCGGTACTCTTCCCCTCCTCGCAAGCCGCGTGCATTTCCCTGGTCCC-TACCAAACGGT-ATTCCTCGATGTGAACTCCTTTTTCAGTGGCT---ATGTCCCTACTCTGTTTCTTTACAA---A-AACT-----TTCA--AGAATGCAG--CATTCGA----------ATT----TTTTTTCGGGGAAA-C---------CCC-----CG--TACCAGGGAATTCAC-CCA--CTCATAT-CCACC-CACATAT--TG-CT--CC-CA--TTGCATGAGGTACCGGGTTTAAAACCCATTGTAA---GTTC--G-----GGTTTA-AAT-AC-ATC-------TT-----TT--TTTTCTtacattctcttctcatgtcggctccgaaataacttaaacgctcctactacgcccatgaagttgtgttatat
gi|5 : GCTCTATAATGAACCAAAATACACTTTTTGGCACTAAAAAA------CAAAG----TAATTTGGGGGAGG-CCCCCAAAACATCCCCAGAATTATATTTTTCATTTTTTTTTG-TCGAAATTCTGATG----AATTTTATACCATTCTA-----ATA---TAATATGAAAGGACTGACAGGAC--CTGGAAAAT---------GCACCAAA------A--TGCACGATTTGGCACTTAAAAA-CCCAAAATTTCC-TAGGGAATACCCCCCCCCCCCCCCGACCCCACCCCACACCCTCCA---------TAAGTAGGAAAGGAGACTC--TACAGTACTCTTCCCCTCCTCGCAAGACGTGTGCATTTCCCTGACCCC-TACCAAACGGT-TTTGCTTGATATGAAATCCTTTC----TGGCT---ACGTCCCTGCTCTTTAACTTAACAACTCATGACTTATCGTATA--AGAATGCAG--CATTTGCTGTT-------------TTTTTCCGGGGAGG-C---------CCC-----AG--TATCAGGCAACTCAT-CCA--CCCATAT-CTCCC-C-CATCT--TG-CT--CC-AA--CTGCATGAGCTACCGGTTTTAAAACCTGTTGGAA---GTT
gi|6 : gTTTCT---GATCTAAATACTGATG----TATTTTATACCATTCGA-----GTA---AAACATGGAAGGACTGACAGGAC--CTGAAAAAG---------GCACCAAA------A--CACACGACTTGACACTTAGAAA-ACCAAAATGT-CATAGGAAA-----------------GA-------------CCTACA---------TG-GCGGGACGGGAAACCCT-TCCGGTA-----------CTCGCAAGCCTCTTGCATTTCCTTGGCACC-TACCAAACTAT-TTCCCTTGATATGAATTCCTTTC----TGACT---ACGT-CCTGCTCTTTATTTTAACAA---A-ATCT-----TACA--ATAATGCGA--CATTTGGTTTTCAAAATATTAAACTTTTTCCGAAGAGTCCTTTCCTTTACCC-----CGTATACCAGGGAACTCAC-CCA--CCCATAT-CTCCC-CACATCT--TG-CT--TC-CA--TTGCATGAGGTACCTGATTT-AAACCCGTTCGAC---GTTC--GTTTGGTTTTTT-AAT-AC-ATC-------TTA----TT--TTTTTTAT-TC---ATAAAAA-----GCTA------TTAAGA-GTCACAAAATATTGG--------TC---------CCATA------------TTCAA-TCATATAGACT-CTCCC-----
gi|7 : acGA---ATGTCATTCAT-GTTGGGTTCTAC
gi|7 : tatgaaacacaaccaagaaattgcttccctgaagaaaaatcatccagagagagcattttttggtagtgagggcataGCCA---ATG--GTTCTTAGCT----TCTACCATATACCAGAATGCACGATTTCACATAAAGAAAAT----CAAAATTTTCA----GGGGGATG-TCCC-CAAACATCTATAAAATTCTATTTTTCAGATTCT---GGTCTTAAT--TGATG----TAATTTATACAATTCCA-----GTA---TAAAAAGGTAGGGCTGACTGCAC--CTGGAAAcagtgacttaataaaatggatatgccaatggttcttagcttctaccatataccagaatgcacgatttcacataaagaaaatcaaaattttcagggggatgtccccaaacatctataaaattctatttttcagattctggtcttaattgatgtaatttatacaattccagtataaaaaggtagggctgactgcacctggaaaccagtagtacagtt
gi|8 : tatgaaacacaaccaagaaattgcttccctgaagaaaaatcatccagagagagcattttttggtagtgagggcatagaatgtcattcatgttgggttctaccagtgacttaataaaatggatatG-TAAGTGACTTATGTCATTACT-GCTAAGTTCTACGGTGCAACAGAATACACAATTTGGCACTTAGAAAAC----CAAAccagtagtacagtt
gi|8 : taaatgatttaaatatgaatttaacactccgaggaaacaattttgggtagtTGAGG-AAAGCGA---ATGTCATTCTT-GCTGAATACTACAAATCACTAGAATGCACGATATAGCACTtatctccaaataaaatacctcaaatatatacgtcaaattccactaaagtggctaccctgaaaaatgtgaaggaacattttgttgtaatgaggaaagcgaatgtcattcttgctgaatactacaaatcactagaatgcacgatatagcactttt
gi|9 : taaatgatttaaatatgaatttaacactccgaggaaacaattttgggtagtgtaagtgacttatgtcattactgctaagttctacggtgcaacagaatacacaatttggcacttagaaaaccaaatatctccaaataaaatacctcaaatatatacgtcaaattccactaaagtggctaccctgaaaaatgtgaaggaacattttgttgtaaG-TAAGTGACTTATGTCATTACT-GCTAAGTTCTACGGTGCAACAGAATACACAATTTGGCACTTAGAAAAC----CAAAttt
gi|9 : taaatgatttaaatatgaatttaacactccgaggaaacaattttgggtagtTGAGG-AAAGCGA---ATGTCATTCTT-GCTGAATACTACAAATCACTAGAATGCACGATATAGCACTtatctccaaataaaatacctcaaatatatacgtcaaattccactaaagtggctaccctgaaaaatgtgaaggaacattttgttgtaatgaggaaagcgaatgtcattcttgctgaatactacaaatcactagaatgcacgatatagcactttt
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|16 ): TTTTTTTCTTGATATTACGTAAAAACGACACAAAATATCTGAGCAAATAGCAAGCATTCTCCATAAAACGTATTAAAATGCAGCATTTTGATTTTATCATAATTTTTCCCGTAACTCCACCTTCAGTGGACACCCTCTCT