lowQualScore : 1111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 11111 1 222222 1111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 1 1 1 1 2222 22 111 2222222 1 111
lowQualScore : 0 33 22 888888 2 2 6666 9999999 3 2 6666 33333 5 555 555 2 1 0 44 33 888888 3 3 3 5555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555 2 1 2 5 7 555 3 3 7 8 1 3 3333 555 3 3 1 3 44 77 1 000 3 8888888 88888 0 3 3 3 000
lowQualScore : . .. .. ...... . . .... ....... . . .... ..... . ... ... . . . .. .. ...... . . . .......................................................................................................... . . . . . ... . . . . . . .... ... . . . . .. .. . ... . ....... ..... . . . . ...
lowQualScore : 9 11 99 222222 9 9 1111 3333333 3 9 1111 55555 1 000 000 9 0 7 22 99 555555 1 1 6 8888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888 8 9 5 5 0 888 3 3 4 8 8 3 3333 222 0 3 0 8 66 33 8 444 3 8888888 33333 3 6 6 6 000
consensus : TATACTCAGCAA--AAAAAGAAACTT--TACTCTCCATGAA------TTGGTTATT-TTCAAAATCCTGTTCGAAACACTGC-AC----TGATATTGGTATGGCTGTGTCAGT-------TGATCATTTTNT-AACAAATCTGTATTTTCATTGGACATTTGAAGTGTAG----TTTTGTA----CCCATAAATTAA---TGATA---AA-GTGGACAAGGGGCGTAATCAAAAATAACGTT--TTTTAACTGAAACTGAAATTTGC--ATTGTTATTGTTGCTTTTCAA--GTT-TG-TTTTT-AAGACTAATATTAGTGAGGCATAGTTGTGAAACAAGCAATTAAGTAAAAATTACAAGTTTAATANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCNNNTNAANAANGTCCACAAAATTATATTGTTTTTTTCAATTGTTTGATTAACAACATNTCTGTTTATGTAATGCACATTTGT---GT-ATCTACCTG-GTGGACTCCGGCACGTGCAAATCATGCAAAACA-G--GATTTTTACAGCT--GGGTTATTAT-CATTTGTGTTTAAATAAACAAGTTTTCATAATTCAAACAGACTGACGCA--ATACCGAC-ATTTTTTATTA---ACAT-CT----AAGTT-----ATAAATGTAGAAA-TT-AAAA-AAGTT---ATTGCACTTTAAACAGAGTAAAGTTTCTTTTTTTGCTCAGT
Reference ( gi|1 ) : TATACTCAGCAA--AAAAAGAAACTT--TACTCTCCATGAA------TTGGTTATT-TTCAAAATCCTGTTTGAAACACTGC-AC----TGATATTGGTATGGCTGTGTCAGT-------TGATCATTTTTT-AACAAATCTGTATTTTCATTGGACATTTGAAGTGTAG----TTTTGTA----TCCATAAATAAA---TGATA---AA-GTGGACAAGGGGTGTAATCAAAAATAACGTT--TTTTAACTGAAACTGAAATTTGC--ATTGTTATTGTTGCTTTTCAA--TTG-TG-TTTTT-AAGACTAATATTAGTGAGGCATAGTTGTGAAAGAAGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTCCACAAAATTATATTGTTTTTTTCAATTGGTTGATTAACAACATATCTGTTTAAGTAATGCACATTTGT---GT-ATCTACCTG-GTTGACTCTGACATGTGCAAATCATGCAAAACA-G--CATTTTTACAGCT--AGGTTATTAT-CATTTGTGTTTAAATAAACAAGTTTTCATAATTCAAACAGACTGACACA--ATACCGAC-TTTTTTTATTA---ACAT-CT----TA-TT-----ATAAATGTTGAAA-TT-AAAA-AAGTT---ATTGCACTTTAAACAGAGTAAAGTTTCTTTTTTTGCTCAGT
gi|5 : TATACTCAGCAA--AAAAAGAAACTT--TACTCTCCATGAA------TTGGTTATT-TTCAAAATCCTGTTTAAAACACTAC-AC----TGATATTGGAATGGCTGTGTCAGT-------TGATCATTTTTT-AACAAATCTGTATTTTCATTGGACATTTGAAGTGTAG----TTTTGTA----CCCATAAATTAA---TGATA---AA-GTGGATAAGGGGTGTAATCAAAAACAACCTT--TTTTTACTGAAACTGAAATTTGC--ATTGTTATTGTTGCTTT-CAA--GTT-TG-TTTTT-AAGACTAATATTAGTGAGGCATAGTTGTGAAAGAAGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTCCACAAAATTATATTGTTTTTT-CAACTGTTTGATTAACAACATATCTGTTTATGTAATGCACATTTGT---GT-ATCTA-----AT--AC-CTG----GT-------------AACA-G--GATTTTTACAGCT--AGGTTATTAT-CATTTGTGTTTAAATAAACAAGTTTTCATAATTCAAACAGACTGACACA--ATACCGAC-ATTTTTTATTA---ACAT-CT----TA-TT-----ATAAATGTTGAAA-TT-AAAA-AAGTT---ATTGAACTTTAAACAGAGTGAAGTTTCTTTTTTTGCTCAGT
gi|5 : TATACTGAGCAA--AAAAAGAAACTT--CACTCTata
gi|4 : tatactcagcaaaaaaagaaactttactctccatgaattggttattttcaaaatcctgtttaaaacactacactgatattggaatggctgtgtcagttgatcattttttaacaaatctgtattttcattggacatttgaagtgtagttttgtacccataaattaatgataaagtggataaggggtgtaatcaaaaacaacctttttttactgaaactgaaatttgcattgttattgttgctttcaagtttgtttttaagactaatattagtgaggcatagttgtgaaagaagcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngtccacaaaattatattgttttttcaactgtttgattaacaacatatctgtttatgtaatgcacatttgtgtatctaatacctggtaacaggatttttacagctaggttattatcatttgtgtttaaataaacaagttttcataattcaaacagactgacacaataccgacattttttattaacatcttattataaatgttgaaattaaaaaagttattgaactttaaacTATACTCAGCAA--AAAACAAA--TT--TACTCTCCATGAA------TTGGTTATT-TTCAAAATCCTATTTGACACACTGC-AC----TGATATTAGTATGGCTGTGTCAGG-------TGATCATTTTGT-ACCAAATCTGTATTTTTATTTGACATTTGAAGTGTAG----TTTTGTA----ACCATTAATTAA---TGATA---AA-GTGGACAAGAGGCGTAATAAAAAATAACGTT--TTTTAACTAAAACTGAAATTTGC--ATTGTTATTATTGCTTTTCAA--GTT-TG-TTTTT-AAGGCTAATATTA-------------GTGAAACAAGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCATTAAAGAATG-ACACAAACTTATATTGTTTTTTTCAATTGTTTGAATAACAACATTTCTGTTTATGTAATGTACTTTTGT---GT-ATCTACCTG-GTGGATGCCGGCACATGCAAATCATGCAAATCATG--T-TTTTTACAGCT--GGATGATTAT-CACTTGTGTTTAAATAAACAAGTTTTCATAATTCAAACAGACTGACGCA--ATACCAAC--GTTTTAATAA---ACAT-CT----AAGTT-----ATAATTGTAGAAA-TTAAAAA-AAGTT---ATTGCACTTTAAACAAAGTAAAGTTTCTTTTTTAGCTCAGT
gi|11 : TATACTCAGCAA--AAAAAGAAACTT--TACTCTCCATGAA------TTGGTTATT-TTCAAAATCCTGTTTGAAACACTGC-AC----TGATATTGGTATGGCTGTGTCAGT-------TGATCATTTCTT-AACAAATCTGTATTTTCATTGGACATTTGAAGTGTAG----TTTTGTA----CCCATAAATTAA---TGATA---AA-ATGGACAAGGGGTGTAATCAAAAATAACGTT--TTTTAACTGAAACTGAAATTTGC--ATTGTTATTGTTGCCTTTCAA--GTT-TG-TTTTT-AAGACTAATATTAGTGAGGCATAGTTGTGAAAGAAGCAATTAAGTAAAAATTACAAGTTTAATANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTCCACAAAATTATATTG-TTTTTTCAATTGTTTGATTAACAACATATCTGTTTATGTAATGCACATTTGT---GT-ATCTACCTG-GTAGACTCTGGCATGTGCAAATCATGCAAAACA-G--GATTTTTACAGCT--Aa
gi|13 : TATACTCAGCAA--AAATAGAAACTT--TACTCTCCATGAA------TTGGTTATT-TTCAAAATCCTGTTTGAAACACTGC-AC----TGATATTGGTATGGCTGTGTCAGT-------TGATCGTTTTTT-AACAAATCTGTATTTTCATTGGACATTTGAAGCGTAG----TTTTGTA----CCCATAAATTAA---TGATA---AA-GTGGACAAGGGGTGTAATCAAAAATAACG-T--TTTTAACTGAAACTGAAATTTGC--ATTGTTATTGTTGCTTTTCAA--GTT-TG-TTTTT-AAGACTAATATTAGTGAGGCATAGTTGTGAAA
gi|9 : TATACTCGGCAACAAAAAAGAAACTT--TACTCCCCATCAA------TTGGTTGTT-TTCAAATTTCTGTACGAAAGACTTC-AA----TGATATTAGTATGGATGAGTCAGTTACTTAGTAATCATTTTGA-AACATATCTGTATTTTCGTTCAATATTTAAAGAGAAGCTTTTTTTTTA----CCTTT---TTAACCTTAATA---AA-TTAGACAAGGGACATAA-CAAAAATAACGTT--TTTTAACTGAAACCAAAAGTTGT--ATTGTTATTGTTGCTTCTCAA--GTT-TGCTTTTT-AAGATTTAAAATAACGAGGCACTGCTGTGAAACAA
gi|2 : ATACTCAGCAA--AAAAAGAAACTT--TACTCTCCATGAA------TTGGTTATT-TTCAAAATCCTGTTAGAAACACTGC-AC----TGATATTGGTATGGCTGTGTCAGT-------TTATAATTTTTT-AACAAATCTGTATTTTCATTGGACATTTGAAGTGTAG----TTTTGTA----CCCATAAATTAA---TGATA---AA-GTGGACAAGGGGTGTAATAAAAAATAACGTT--TTTTAACTGAAACTGAAATTTGC--ATTGTTATTGTTGCTTTTAAG--TT--TG-TTTTT-AAGACTAATATTAGTGAGGCATAGTTGTGAAAGAAGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTCCACAGAATTATATTG-TTTTTTCAATTGTTTGATTAACAACATATCTGTTTATGTTATGCACATTTGT---GT-ATCTACCTG-GTGGACTCCGGCATGTGCAAATTATGCAAAACA-G--GATTTTTACAGCT--AGGTTATTAT-CATTTGTGTTTAAATAAACAAGTTTTCATAATTCAAACAGACTGACACA--ATACCGAC-ATTTTTTATTA---ACAT-CT----TA-TT-----ATAAATGTTGAAA-TT-AAAT-AAGTT---ATTGAACTTTAAACAGAGTAAAGTTTCTTTTTTTGCTCAGTaataatgatgtgtttgattaataccatgcctgtttatgtaatgcttgtttgtgtatctacctgttagactctggcacggacaaatcaccaacagagttttttttatggctggatgagtatccctcgtgcttaaataaataagtttcaactagccaaaccgactgacgcaataccgatattttatacatacatccttatttctacataaagaaatcaaaaaagttataatcgcattttaaaaagagtaaagtgtattttatgctgtcata
gi|3 : ATACTGAGCAA--AAAAAGAAACTT--TACTCTa
gi|6 : actcagcaaaaaaagaaactttactctccatgaattggttattttcaaattcctgtttgacacactgcactgatatttgtacgactgtgtcaattgatcattttgtaacaaatctgtattttcattggacatttgaagtgtgttttgtacccataaattaatgataaagtggacaaggggcgtaatcaaaaataacgttttttaattgaaactgaaatttgcattgttattgttgcttttcaagtttgtttttaagactaatattagtgaggcatagttgtgaaacaagcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngtccacaaaattatgttgtttttttcaattgtttgattaacaacatttctgttgatgtaatgtacatttgtgtatctaccatgtggactctggcatatgcaaatcatttaaaacaggatttttacagctgggttattattgtgtttaaataagcaagttttcaaaattcaaacagactgactcaatatccacatttttttaataacatctaagttataaatgtagaaattaaaaaagttattgcactttaaacATACTGAGCAA--AAAA-GAAACTT--TACTCT
gi|14 : actcagcaaaaaaagaatttttccatgaattggttattttcaaattcctgtttgaaacactgcactgatatttgtatggccgtgtcagttgatcattttgtattaaatctgtattttgattggacatttgaaatgtgttttgtacccataaattaatgataaagtggacaaggcgtataaccaaaaataacatttgcactgttactgttgcttttcaaatttgtttttaagactaatattagtgaggcatagttgtgagannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncgtattacaaagtccacgaaatcatgtatttttttcaattgtttgaataacaacatttttgttgatgtaatgcacatttgagtatttactgcgtggactccagcacatgcaaattatgcaaaacaggatttttacagctgggttattatcacttgtgttcaaaagttttcataattcaaacagactgactcaatacagacatttttttaataacatctaagttataaatgtagaaattgtaaaagttattgcactttaaacATACTGAGTAA--AAAT-GATACTT--TGCTCTCCATCAAAAATTATTAGTTATT-TTCAAAATTACGTTTGAATCATTGC-AA----TGATAGTGATATGGTTGTATCAGT-------TTATCATTTTAT-AACAAAACTGTATGTTCATTAAACATTTTAAGTGTAG----TTTTATACCGGCCCGTAAGTTAA---CGATA---AA-GTAGATAAGAGACATAAT-AAAATTAATGTTTGTTTTAATCAAAACTGAAATTTGC--ATTTCTATTGTTGCT
gi|2 : TACTGAGCAA--AAAAAGAAACTT--TACTCTgctaa
gi|4 : atactcagcaaaaaaagaaactttactctccatgaattggttattttcaaaatcctgttagaaacactgcactgatattggtatggctgtgtcagtttataattttttaacaaatctgtattttcattggacatttgaagtgtagttttgtacccataaattaatgataaagtggacaaggggtgtaataaaaaataacgttttttaactgaaactgaaatttgcattgttattgttgcttttaagtttgtttttaagactaatattagtgaggcatagttgtgaaagaagcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngtccacagaattatattgttttttcaattgtttgattaacaacatatctgtttatgttatgcacatttgtgtatctacctggtggactccggcatgtgcaaattatgcaaaacaggatttttacagctaggttattatcatttgtgtttaaataaacaagttttcataattcaaacagactgacacaataccgacattttttattaacatcttattataaatgttgaaattaaataagttattgaactttaaacTACTGAGCTA--AAAAAGAAACTT--TACTTT
gi|8 : tatactcagcaaaaaacaaatttactctccatgaattggttattttcaaaatcctatttgacacactgcactgatattagtatggctgtgtcaggtgatcattttgtaccaaatctgtatttttatttgacatttgaagtgtagttttgtaaccattaattaatgataaagtggacaagaggcgtaataaaaaataacgttttttaactaaaactgaaatttgcattgttattattgcttttcaagtttgtttttaaggctaatattagtgaaacaagcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnccattaaagaatgacacaaacttatattgtttttttcaattgtttgaataacaacatttctgtttatgtaatgtacttttgtgtatctacctggtggatgccggcacatgcaaatcatgcaaatcatgttttttacagctggatgattatcacttgtgtttaaataaacaagttttcataattcaaacagactgacgcaataccaacgttttaataaacatctaagttataattgtagaaattaaaaaaagttattgcactttaaacTACTGAGCAA--AAAAAGAAACTT--TTCTCT
gi|10 : ttcatgaattgattattttcaaaatcctgttcgacacactacactgatattggtatggcttcgtcatttgatcattttgtaacaaatctgtattttcattggacattggaagtgtggttttgtacccataaattaatgatgtagtggacaagaggcataataaaaaataacgtcttttaactgaaactgaaatttgcattgttattgttgcttttcaagttcgttttaaagaccagtattagtgaggcatagttgtgaaacaagcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnacaaagtacacaaaattatgttattttttcaattgtttaacaacatttctgtttatgtaatgtacatttgtgtatctacctggtgaactccggcacgtgcaaatcatgttttttacagctggatgattatcacttgtgtttaaataaacatgttttcatcattcaaacagactgtcgcaataccaacatttttataaacatctaagatattactatagaaattaaaaaagttattgcactttaaacTAATCAGCAA--AAAAAGACACTT--TACTCTCCATAAA------TTGGTTATT-TTCAAAATCCTGTTTGAAACACTGC-AC----TGACATTGGTATGGATGTGTCAAT-------TTATCATTTTTT-AACAAATCTGTATTTTCATTTGACATTTGAAGTGTAG----TTTTGTA----CCCATAACTTAA---TGATA---AA-GTGGACAAGGGGCGTAAACAAAAATAATGTT--TTTTAACTGAAACTGAAATTTGC--ATTATTATTGTTGCTTTT--------------------AACTAATTTTAGTGAGGCATAGTTGTGAGACAAGC
gi|3 : ACTCAGCAA--AAAAAGAAACTT--TACTCTCCATGAA------TTGGTTATT-TTCAAATTCCTGTTTGACACACTGC-AC----TGATATTTGTACGACTGTGTCAAT-------TGATCATTTTGT-AACAAATCTGTATTTTCATTGGACATTTGAAGTGT-G----TTTTGTA----CCCATAAATTAA---TGATA---AA-GTGGACAAGGGGCGTAATCAAAAATAACGTT--TTTTAATTGAAACTGAAATTTGC--ATTGTTATTGTTGCTTTTCAA--GTT-TG-TTTTT-AAGACTAATATTAGTGAGGCATAGTTGTGAAACAAGC-NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTCCACAAAATTATGTTGTTTTTTTCAATTGTTTGATTAACAACATTTCTGTTGATGTAATGTACATTTGT---GT-ATCTACCAT-GTGGACTCTGGCATATGCAAATCATTTAAAACA-G--GATTTTTACAGCT--GGGTTATTA-----TTGTGTTTAAATAAGCAAGTTTTCAAAATTCAAACAGACTGACTCA--ATATCCACATTTTTTTAATA---ACAT-CT----AAGTT-----ATAAATGTAGAAA-TT-AAAA-AAGTT---ATTGCACTTTAAACAGAGTAAAGTTTCTTTTTTTGCTCAGTaagtaagtaagacaaagtcaatcttccttgaggcgctcttacatttctgtttatgtaatgcacatttgtgtatctacctggtggactccggcacgtacaaatcatgcaaaacaggatttttacagctgggttattatcatttgtgtttaaatgaataatttttcataattcaaacagactgacgcaggaccgaccttttttattaacatctaagttataaaggtagaaatttaaaaaagttactgcactttaaactgagttttttagctcagta
gi|6 : ACTCAGCAA--AAAAAGAA---T--T--TTTCCATGAA------TTGGTTATT-TTCAAATTCCTGTTTGAAACACTGC-AC----TGATATTTGTATGGCCGTGTCAGT-------TGATCATTTTGT-ATTAAATCTGTATTTTGATTGGACATTTGAAATGT-G----TTTTGTA----CCCATAAATTAA---TGATA---AA-GTGGACAAGGCGTATAACCAAAAAT------------------AAC----ATTTGC--ACTGTTACTGTTGCTTTTCAA--ATT-TG-TTTTT-AAGACTAATATTAGTGAGGCATAGTTGTGAGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCGTATTACAAA-GTCCACGAAATCATGT-ATTTTTTTCAATTGTTTGAATAACAACATTTTTGTTGATGTAATGCACATTTGA---GT-ATTTA-CTGCGTGGACTCCAGCACATGCAAATTATGCAAAACA-G--GATTTTTACAGCT--GGGTTATTAT-CACTTGTGTTCAA------AAGTTTTCATAATTCAAACAGACTGACTCA--ATACAGACATTTTTTTAATA---ACAT-CT----AAGTT-----ATAAATGTAGAAA-TT-GTAA-AAGTT---ATTGCACTTTAAACAGAGTAAAGTTTC-TTTTTTGCTCAGTat
gi|16 : AGCAA--AAAAAGAAACTT--TACTCat
gi|15 : tgtttatctgcctggtggactctggtacgtgcaaaccttgcaaaacaagttttttttacagctgcaagattgtcatttgtgtttaaatagacacatttccacaaatagactgataaaataccgacaatttgtataaatacatctaagttatacatgtagaaaaaaaagttattgcacttAA--AAAAAGAAACTT--TACTCTTCATAAA------TTGG----T-TTAAAAATCGGGTTCGGAACACTGCGACATTGTGATAGTGGTATAGTTGTGTCGGT-------TGATCAGTTTTTAAACACATCTGTATTTTAATTGAACACTTGTA----AC----CTTTG-------------ATTAA---CGAAA---CA-GAGGACAAGGGGAATAATGATAAATAACGTca
gi|12 : tgtatgctcggcaaaaaaaaaAAGCTTACTACGC-CCACGTA--------GGTTATTATTCAAGAATTTGTTCGAAACAGTGC-AG----TGACTTTGGCACGGACATGTCATA-------TGTTCATTTTTT-AACAAATCTGTATTTTCATTAAA----TAGAGAGTAG----TTTGGTA----CCCGTAAATAAA---CGATACTTAACGTGG-CA-------TAATCAAATATAACGTT--TTTAAGTTGAAAATGAAATTTGCCAACTGTTATTGTTGTTGCTCAA--GGT-TG-TTTTT-AAGACTTAAATTAGTGAGGCATCGCTGTgt
gi|8 : TTCATGAA------TTGATTATT-TTCAAAATCCTGTTCGACACACTAC-AC----TGATATTGGTATGGCTTCGTCATT-------TGATCATTTTGT-AACAAATCTGTATTTTCATTGGACATTGGAAGTGTGG----TTTTGTA----CCCATAAATTAA---TGATG---TA-GTGGACAAGAGGCATAATAAAAAATAACGTC--TTTTAACTGAAACTGAAATTTGC--ATTGTTATTGTTGCTTTTCAA--GTT-CG-TTTTA-AAGACCAGTATTAGTGAGGCATAGTTGTGAAACAAGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACAAAGTACACAAAATTATGTTA-TTTTTTCAATT-GT---TTAACAACATTTCTGTTTATGTAATGTACATTTGT---GT-ATCTACCTG-GTGAACTCCGGCACGTGCAAATCATGT------------TTTTTACAGCT--GGATGATTAT-CACTTGTGTTTAAATAAACATGTTTTCATCATTCAAACAGACTGTCGCA--ATACCAAC--ATTTTTATAA---ACAT-CTAAGATA-TT-----AC---TATAGAAA-TT-AAAA-AAGTT---ATTGCACTTTAAACAGAGAAAAGTTTCTTTTTTTGCTCAGTtcaacaaagttaccttgtgttttcaattgtttggttaataatatgtttgtttatgttatgcaaatgtgtcacgttatctacccggtggactatggcacgtgcaaatcgtgcaaaacagggtttttacagctggatgattatcgtttgtgtgtatttaaacaagttcacaagccaaacagacttacgtaagataccgacagttttatacatacatctaagttgtacatgtagatgt
gi|7 : AA------TTGGTTATT-TTCAAAATCCTGTTCGAAACACTGC-AC----TGATATTGGTATGGCTGTGTCAGT-------TGATCATTTTAT-AACAAATCTGTATTTTCATTGGACATTTGAAGTGTAG----TTTTGTA----CCCATAAATTAA---TGATA---AA-GTGGACAAGGGGTGTAATCAAAAATAACGTT--TTTTAACTGAAACTGAAATTTGC--ATTGTTATTGTTGC-TTTCAA--GTT-TG-TTTTT-AAGACTTATATTAGTGAGGCATAGTTGTGAAAGAAGCAATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATTATATTG-TTTTTTCAATTGTTTGATTAACAACATATCTGTTTATGTAATGCACATTTGT---GT-ATCTACCTG-GTGGACTCCGGCATGTGCAAATCATGCAAAACA-G--GATGTTTAAAGCT--ATGTTATTAT-CATTTGTGGTTAAATAAACAAGTTTTCATAATTCAAACAGACTGACACA--ATACCGAC-ATTTTTTATTA---ACAT-CT----CA-TT-----ATAAATGTTGAAA-TT-AAAA-AAGTT---ATTGAACTTTAAACAGAGTAAAGTTTCTTTTTTT-CTCAa
gi|18 : CTGAAACTTAAGTTTGC--ATTGTTACTATTGCTTCTCAATGTTGTTG-TTTTTAAAAACTA
gi|12 : TCAACAAAGTTACCTTGTGTTTT-CAATTGTTTGGTTAATAATATGTTTGTTTATGTTATGCAAATGTGTCACGTTATCTACCCG-GTGGACTATGGCACGTGCAAATCGTGCAAAACA-G--GGTTTTTACAGCT--GGATGATTAT-CGTTTGTGTGTATTTAAACAAG--TTCACAAGCCAAACAGACTTACGTAAGATACCGACAGTTTTATACAT---ACAT-CT----AAGTT-----GTACATGTAGAtaattgctaagcaaaattacgatatgtttttgattatctggttcacaacgtgtttctttgtataatac
gi|9 : aagcttactacgcccacgtaggttattattcaagaatttgttcgaaacagtgcagtgactttggcacggacatgtcatatgttcattttttaacaaatctgtattttcattaaatagagagtagtttggtacccgtaaataaacgatacttaacgtggcataatcaaatataacgtttttaagttgaaaatgaaatttgccaactgttattgttgttgctcaaggttgtttttaagacttaaattagtgaggcatcgctgtTGTTTGATTAATACCATGCCTGTTTATGTAATGCTTGTTTGT---GT-ATCTACCTG-TTAGACTCTGGCACGGACAAATCAC-CAACAGA-GT-TTTTTTTATGGCT--GGATGAGTAT-CCCTCGTGCTTAAATAAATAAGTTTCAACTAGCCAAACCGACTGACGCA--ATACCGAT-ATTTTATACAT---ACATCCT----TA-TTTCTACATAAA----GAAA-TC-AAAA-AAGTTATAATCGCATTTTAAAAAGAGTAAAGTGTATTTTtgt
gi|10 : tatactcggcaacaaaaaagaaactttactccccatcaattggttgttttcaaatttctgtacgaaagacttcaatgatattagtatggatgagtcagttacttagtaatcattttgaaacatatctgtattttcgttcaatatttaaagagaagctttttttttacctttttaaccttaataaattagacaagggacataacaaaaataacgttttttaactgaaaccaaaagttgtattgttattgttgcttctcaagtttgctttttaagatttaaaataacgaggcactgctgtgaaacaaaataatgatgACATTTCTGTTTATGTAATGCACATTTGT---GT-ATCTACCTG-GTGGACTCCGGCACGTACAAATCATGCAAAACA-G--GATTTTTACAGCT--GGGTTATTAT-CATTTGTGTTTAAATGAATAATTTTTCATAATTCAAACAGACTGACGCA--GGACCGAC-CTTTTTTATTA---ACAT-CT----AAGTT-----ATAAAGGTAGAAATTT-AAAA-AAGTT---ACTGCACTTTAAACTGAG---------TTTTTTAGCTCAGTatgctgtcata
gi|16 : taatcagcaaaaaaagacactttactctccataaattggttattttcaaaatcctgtttgaaacactgcactgacattggtatggatgtgtcaatttatcattttttaacaaatctgtattttcatttgacatttgaagtgtagttttgtacccataacttaatgataaagtggacaaggggcgtaaacaaaaataatgttttttaactgaaactgaaatttgcattattattgttgcttttaactaattttagtgaggcatagttgtgagacaagcaagtaagtaagacaaagtcaatcttccttgaggcgctcttTGT---TT-ATCTGCCTG-GTGGACTCTGGTACGTGCAAACCTTGCAAAACA-AGTTTTTTTTACAGCTGCAAG--ATTGT-CATTTGTGTTTAAATAGACACATTTCCA-----CAAATAGACTGATAAA--ATACCGAC-AATTTGTATAAAT-ACAT-CT----AAGTT-----ATACATGTAGAA-----AAAA-AAGTT---ATTGCACTT------GAGTAAAGTTTCTTTTTTTGCTCAa
gi|17 : TTTACAGCT--CAATGACCGTTCATTTGTGTTTAAATAAACTAGTTTCCACTAGCCATAAAGACTGGCTCA--ATAATGAC---ATTTTAATACATACAT-CT----AAGTT-----ATACATGAAGAAA-TA-AAAATAAATTC--ATT
gi|10 : CAATTTATGGAGAGTAAAGTGTCTTTTTTTGCTtttgct
gi|15 : taatcCAATTTATGAAGAGTAAAGTTTCTTTTTTTgttattttcaaaatcctgtttgaaacactgcactgacattggtatggatgtgtcaatttatcattttttaacaaatctgtattttcatttgacatttgaagtgtagttttgtacccataacttaatgataaagtggacaaggggcgtaaacaaaaataatgttttttaactgaaactgaaatttgcattattattgttgcttttaactaattttagtgaggcatagttgtgagacaagcaagtaagtaagacaaagtcaatcttccttgaggcgctcttacatttctgtttatgtaatgcacatttgtgtatctacctggtggactccggcacgtacaaatcatgcaaaacaggatttttacagctgggttattatcatttgtgtttaaatgaataatttttcataattcaaacagactgacgcaggaccgaccttttttattaacatctaagttataaaggtagaaatttaaaaaagttactgcactttaaactgagttttttagctcagta
gi|2 : tgtatgctcggcaaaaaaaaaAGAGTAAAGTTTCTTTTTTTGCTGAGTgtttaaaaatcgggttcggaacactgcgacattgtgatagtggtatagttgtgtcggttgatcagtttttaaacacatctgtattttaattgaacacttgtaacctttgattaacgaaacagaggacaaggggaataatgataaataacgtgt
gi|5 : atAGAGTAAAGTTTCTTTTTTTGCTGAGTccatgaattggttattttcaaaatcctgttagaaacactgcactgatattggtatggctgtgtcagtttataattttttaacaaatctgtattttcattggacatttgaagtgtagttttgtacccataaattaatgataaagtggacaaggggtgtaataaaaaataacgttttttaactgaaactgaaatttgcattgttattgttgcttttaagtttgtttttaagactaatattagtgaggcatagttgtgaaagaagcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngtccacagaattatattgttttttcaattgtttgattaacaacatatctgtttatgttatgcacatttgtgtatctacctggtggactccggcatgtgcaaattatgcaaaacaggatttttacagctaggttattatcatttgtgtttaaataaacaagttttcataattcaaacagactgacacaataccgacattttttattaacatcttattataaatgttgaaattaaataagttattgaactttaaacagagtaaagtttctttttttgctcagta
gi|3 : tatAGAGTAAAGTTTCTTTTTTTGCTGAGTccatgaattggttattttcaaaatcctgtttaaaacactacactgatattggaatggctgtgtcagttgatcattttttaacaaatctgtattttcattggacatttgaagtgtagttttgtacccataaattaatgataaagtggataaggggtgtaatcaaaaacaacctttttttactgaaactgaaatttgcattgttattgttgctttcaagtttgtttttaagactaatattagtgaggcatagttgtgaaagaagcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngtccacaaaattatattgttttttcaactgtttgattaacaacatatctgtttatgtaatgcacatttgtgtatctaatacctggtaacaggatttttacagctaggttattatcatttgtgtttaaataaacaagttttcataattcaaacagactgacacaataccgacattttttattaacatcttattataaatgttgaaattaaaaaagttattgaactttaaacagagtgaagtttctttttttgctcagtata
gi|11 : AGAGTAAAGTTTCTTTTTTTGCTGAGTccatgaattggttattttcaaattcctgtttgacacactgcactgatatttgtacgactgtgtcaattgatcattttgtaacaaatctgtattttcattggacatttgaagtgtgttttgtacccataaattaatgataaagtggacaaggggcgtaatcaaaaataacgttttttaattgaaactgaaatttgcattgttattgttgcttttcaagtttgtttttaagactaatattagtgaggcatagttgtgaaacaagcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngtccacaaaattatgttgtttttttcaattgtttgattaacaacatttctgttgatgtaatgtacatttgtgtatctaccatgtggactctggcatatgcaaatcatttaaaacaggatttttacagctgggttattattgtgtttaaataagcaagttttcaaaattcaaacagactgactcaatatccacatttttttaataacatctaagttataaatgtagaaattaaaaaagttattgcactttaaacagagtaaagtttctttttttgctcagtat
gi|13 : tatAGAGTAAAGTTTCTATTTTTGCTGAGTccatgaattggttattttcaaaatcctgtttgaaacactgcactgatattggtatggctgtgtcagttgatcatttcttaacaaatctgtattttcattggacatttgaagtgtagttttgtacccataaattaatgataaaatggacaaggggtgtaatcaaaaataacgttttttaactgaaactgaaatttgcattgttattgttgcctttcaagtttgtttttaagactaatattagtgaggcatagttgtgaaagaagcaattaagtaaaaattacaagtttaatannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngtccacaaaattatattgttttttcaattgtttgattaacaacatatctgtttatgtaatgcacatttgtgtatctacctggtagactctggcatgtgcaaatcatgcaaaacaggatttttacagcta
1 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|19 ): ATAACGCATTCGCTTTATACCAACATTTTTACACATACATCTAAATCAAACGTGTAGAAAAAAAA
Alignments
lowQualScore : 7777777777777777777777777777777777777777777777777777777777777777777777777777 11
lowQualScore : 44 44 777777 2 1 2 5555 8888888 1 2 5555 5555 444 33 33 2 33 2 2 1 1 0 0 1111111111111111111111111111111111111111111111111111111111111111111111111111 1 3 3 8 2 1 555 3 3 0 888888 2 3 0 1 44 22 3 1 999 3 0 7 3 3 3 999
lowQualScore : .. .. ...... . . . .... ....... . . .... .... ... .. .. . .. . . . . . . ............................................................................ . . . . . . ... . . . ...... . . . . .. .. . . ... . . . . . . ...
lowQualScore : 66 22 777777 7 3 7 7777 7777777 0 7 7777 7777 777 99 77 9 99 9 9 3 9 4 5 2222222222222222222222222222222222222222222222222222222222222222222222222222 0 6 6 8 1 0 444 1 1 4 888888 1 1 2 9 22 33 1 0 666 1 8 3 3 3 3 222
consensus : TATACTCAGCAA--AAAAAGAAACTT--TACTCTCCATGAA------TTGGTTATT-TTCAAAATCCTGTTCGAAACACTGC-AC----TGATATTGGTATGGCTGTGTCAGT-------TGATCATTTTNT-AACAAATCTGTATTTTCATTGGACATTTGAAGTGTAG----TTTTGTA----CCCATAAATTAA---TGATAAAGTGGACAAGGGGCGTAATCAAAAATAACGTT--TTTTAACTGAAACTGAAATTTGC--ATTGTTATTGTTGCTTTTCAA-GT--TTG-TTTTT-AAGACTAATATTAGTGAGGCATAGTTGTGAAACAAGCAATTAAGTAAGAATTACAAGTTTAATANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCNNNTNAACAAAGTCCACAAAATTAT-AT-TGTTTTTTTCAATTGTTTGATTAACAACATNTCTGTTTATGTAATGCACATTTGT---GT-ATCTACCTG-GTGGACTCCGGCACGTGCAAATCATGCAAAACAGG--A---TTTTTACAGCTGGGTNATTAT-CATTTGTGTTTAAATAAACAAGTTTTCATAATTCAAACAGACTGACGCA--ATACCGACA-TTTTT-TATTA---ACAT-CTAAGTTATAAATGTAGAAA-TT-AAAA-AAGTT---ATTGCACTTTAAACAGAGTAAAGTTTCTTTTTTTGCTCAGT
Reference ( family-1777 ) : TATACTCAGCAA--AAAAAGAAACTT--TACTCTCCATGAA------TTGGTTATT-TTCAAAATCCTGTTCGAAACACTGC-AC----TGATATTGGTATGGCTGTGTCAGT-------TGATCATTTTNT-AACAAATCTGTATTTTCATTGGACATTTGAAGTGTAG----TTTTGTA----CCCATAAATTAA---TGATAAAGTGGACAAGGGGCGTAATCAAAAATAACGTT--TTTTAACTGAAACTGAAATTTGC--ATTGTTATTGTTGCTTTTCAA-GT--TTG-TTTTT-AAGACTAATATTAGTGAGGCATAGTTGTGAAACAAGCAATTAAGTAAAAATTACAAGTTTAATANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCNNNTNAANAANGTCCACAAAATTAT-AT-TGTTTTTTTCAATTGTTTGATTAACAACATNTCTGTTTATGTAATGCACATTTGT---GT-ATCTACCTG-GTGGACTCCGGCACGTGCAAATCATGCAAAACAGG--A---TTTTTACAGCTGGGTTATTAT-CATTTGTGTTTAAATAAACAAGTTTTCATAATTCAAACAGACTGACGCA--ATACCGACA-TTTTT-TATTA---ACAT-CTAAGTTATAAATGTAGAAA-TT-AAAA-AAGTT---ATTGCACTTTAAACAGAGTAAAGTTTCTTTTTTTGCTCAGT
gi|1 : TATACTCAGCAA--AAAAAGAAACTT--TACTCTCCATGAA------TTGGTTATT-TTCAAAATCCTGTTTGAAACACTGC-AC----TGATATTGGTATGGCTGTGTCAGT-------TGATCATTTTTT-AACAAATCTGTATTTTCATTGGACATTTGAAGTGTAG----TTTTGTA----TCCATAAATAAA---TGATAAAGTGGACAAGGGGTGTAATCAAAAATAACGTT--TTTTAACTGAAACTGAAATTTGC--ATTGTTATTGTTGCTTTTCAA-TT--GTG-TTTTT-AAGACTAATATTAGTGAGGCATAGTTGTGAAAGAAGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTCCACAAAATTAT-AT-TGTTTTTTTCAATTGGTTGATTAACAACATATCTGTTTAAGTAATGCACATTTGT---GT-ATCTACCTG-GTTGACTCTGACATGTGCAAATCATGCAAAACAGC--A---TTTTTACAGCTAGGTTATTAT-CATTTGTGTTTAAATAAACAAGTTTTCATAATTCAAACAGACTGACACA--ATACCGACT-TTTTT-TATTA---ACAT-CTTA-TTATAAATGTTGAAA-TT-AAAA-AAGTT---ATTGCACTTTAAACAGAGTAAAGTTTCTTTTTTTGCTCAGT
gi|10 : TAATCAGCAA--AAAAAGACACTT--TACTCTCCATAAA------TTGGTTATT-TTCAAAATCCTGTTTGAAACACTGC-AC----TGACATTGGTATGGATGTGTCAAT-------TTATCATTTTTT-AACAAATCTGTATTTTCATTTGACATTTGAAGTGTAG----TTTTGTA----CCCATAACTTAA---TGATAAAGTGGACAAGGGGCGTAAACAAAAATAATGTT--TTTTAACTGAAACTGAAATTTGC--ATTATTATTGTTGCTTTT--------------------AACTAATTTTAGTGAGGCATAGTTGTGAGACAAGCAAGTAAGTAAGA
gi|10 : ACATTTCTGTTTATGTAATGCACATTTGT---GT-ATCTACCTG-GTGGACTCCGGCACGTACAAATCATGCAAAACAGG--A---TTTTTACAGCTGGGTTATTAT-CATTTGTGTTTAAATGAATAATTTTTCATAATTCAAACAGACTGACGCA--GGACCGACC-TTTTT-TATTA---ACAT-CTAAGTTATAAAGGTAGAAATTT-AAAA-AAGTT---ACTGCACTTTAAACTGAG---------TTTTTTAGCTCAGTcaaagtcaatcttccttgaggcgctcttacatttctgtttatgtaatgcacatttgtgtatctacctggtggactccggcacgtacaaatcatgcaaaacaggatttttacagctgggttattatcatttgtgtttaaatgaataatttttcataattcaaacagactgacgcaggaccgaccttttttattaacatctaagttataaaggtagaaatttaaaaaagttactgcactttaaactgagttttttagctcagta
gi|11 : taatcagcaaaaaaagacactttactctccataaattggttattttcaaaatcctgtttgaaacactgcactgacattggtatggatgtgtcaatttatcattttttaacaaatctgtattttcatttgacatttgaagtgtagttttgtacccataacttaatgataaagtggacaaggggcgtaaacaaaaataatgttttttaactgaaactgaaatttgcattattattgttgcttttaactaattttagtgaggcatagttgtgagacaagcaagtaagtaagacaaagtcaatcttccttgaggcgctcttTATACTCAGCAA--AAAAAGAAACTT--TACTCTCCATGAA------TTGGTTATT-TTCAAAATCCTGTTTGAAACACTGC-AC----TGATATTGGTATGGCTGTGTCAGT-------TGATCATTTCTT-AACAAATCTGTATTTTCATTGGACATTTGAAGTGTAG----TTTTGTA----CCCATAAATTAA---TGATAAAATGGACAAGGGGTGTAATCAAAAATAACGTT--TTTTAACTGAAACTGAAATTTGC--ATTGTTATTGTTGCCTTTCAA-GT--TTG-TTTTT-AAGACTAATATTAGTGAGGCATAGTTGTGAAAGAAGCAATTAAGTAAAAATTACAAGTTTAATANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTCCACAAAATTAT-AT-TG-TTTTTTCAATTGTTTGATTAACAACATATCTGTTTATGTAATGCACATTTGT---GT-ATCTACCTG-GTAGACTCTGGCATGTGCAAATCATGCAAAACAGG--A---TTTTTACAGCTa
gi|12 : AAGCTTACTACGC-CCACGTA--------GGTTATTATTCAAGAATTTGTTCGAAACAGTGC-AG----TGACTTTGGCACGGACATGTCATA-------TGTTCATTTTTT-AACAAATCTGTATTTTCATTAAA----TAGAGAGTAG----TTTGGTA----CCCGTAAATAAA---CGAT--ACTTAAC--GTGGCATAATCAAATATAACGTT--TTTAAGTTGAAAATGAAATTTGCCAACTGTTATTGTTGTTGCTCAA-GG--TTG-TTTTT-AAGACTTAAATTAGTGAGGCATCGCTGTTCAACAAa
gi|12 : TCAACAAAGTTAC-CT-TGTGTTTT-CAATTGTTTGGTTAATAATATGTTTGTTTATGTTATGCAAATGTGTCACGTTATCTACCCG-GTGGACTATGGCACGTGCAAATCGTGCAAAACAGG--G---TTTTTACAGCTGGATGATTAT-CGTTTGTGTGTATTTAAACAAG--TTCACAAGCCAAACAGACTTACGTAAGATACCGACA-GTTTTATACAT---ACAT-CTAAGTTGTACATGTAGAagttaccttgtgttttcaattgtttggttaataatatgtttgtttatgttatgcaaatgtgtcacgttatctacccggtggactatggcacgtgcaaatcgtgcaaaacagggtttttacagctggatgattatcgtttgtgtgtatttaaacaagttcacaagccaaacagacttacgtaagataccgacagttttatacatacatctaagttgtacatgtagatgt
gi|13 : aagcttactacgcccacgtaggttattattcaagaatttgttcgaaacagtgcagtgactttggcacggacatgtcatatgttcattttttaacaaatctgtattttcattaaatagagagtagtttggtacccgtaaataaacgatacttaacgtggcataatcaaatataacgtttttaagttgaaaatgaaatttgccaactgttattgttgttgctcaaggttgtttttaagacttaaattagtgaggcatcgctgtTATACTCAGCAA--AAATAGAAACTT--TACTCTCCATGAA------TTGGTTATT-TTCAAAATCCTGTTTGAAACACTGC-AC----TGATATTGGTATGGCTGTGTCAGT-------TGATCGTTTTTT-AACAAATCTGTATTTTCATTGGACATTTGAAGCGTAG----TTTTGTA----CCCATAAATTAA---TGATAAAGTGGACAAGGGGTGTAATCAAAAATAACG-T--TTTTAACTGAAACTGAAATTTGC--ATTGTTATTGTTGCTTTTCAA-GT--TTG-TTTTT-AAGACTAATATTAGTGAGGCATAGTTGTGAAAtgt
gi|14 : ATACTGAGTAA--AAAT-GATACTT--TGCTCTCCATCAAAAATTATTAGTTATT-TTCAAAATTACGTTTGAATCATTGC-AA----TGATAGTGATATGGTTGTATCAGT-------TTATCATTTTAT-AACAAAACTGTATGTTCATTAAACATTTTAAGTGTAG----TTTTATACCGGCCCGTAAGTTAA---CGATAAAGTAGATAAGAGACATAAT-AAAATTAATGTTTGTTTTAATCAAAACTGAAATTTGC--ATTTCTATTGTTGCT
gi|15 : AA--AAAAAGAAACTT--TACTCTTCATAAA------TTGG----T-TTAAAAATCGGGTTCGGAACACTGCGACATTGTGATAGTGGTATAGTTGTGTCGGT-------TGATCAGTTTTTAAACACATCTGTATTTTAATTGAACACTTGTA----AC----CTTTG-------------ATTAA---CGAAACAGAGGACAAGGGGAATAATGATAAATAACGTgctaa
gi|16 : tgtatgctcggcaaaaaaaaaTGT---TT-ATCTGCCTG-GTGGACTCTGGTACGTGCAAACCTTGCAAAACAAGTTT---TTTTTACAGCTGCAAGATTGT-CATTTGTGTTTAAATAGACACATTTCCA-----CAAATAGACTGATAAA--ATACCGACA-ATTTG-TATAAAT-ACAT-CTAAGTTATACATGTAGAA-----AAAA-AAGTT---ATTGCACTT------GAGTAAAGTTTCTTTTTTTGCTCAgt
gi|17 : TTTACAGCTCAATGACCGTTCATTTGTGTTTAAATAAACTAGTTTCCACTAGCCATAAAGACTGGCTCA--ATAATGACA---TTT-TAATACATACAT-CTAAGTTATACATGAAGAAA-TA-AAAATAAATTC--ATT
gi|18 : CTGAAACTTAAGTTTGC--ATTGTTACTATTGCTTCTCAATGTTGTTG-TTTTTAAAAACTAtttgct
gi|18 : CAAAATTACGATATGTTTTT---GATTATCTGGTTCACAACGTGTTTCTTTGTATAATACtaattgctaagcaaaattacgatatgtttttgattatctggttcacaacgtgtttctttgtataatac
gi|2 : ctgaaacttaagtttgcattgttactattgcttctcaatgttgttgtttttaaaaactataattgctaagATACTCAGCAA--AAAAAGAAACTT--TACTCTCCATGAA------TTGGTTATT-TTCAAAATCCTGTTAGAAACACTGC-AC----TGATATTGGTATGGCTGTGTCAGT-------TTATAATTTTTT-AACAAATCTGTATTTTCATTGGACATTTGAAGTGTAG----TTTTGTA----CCCATAAATTAA---TGATAAAGTGGACAAGGGGTGTAATAAAAAATAACGTT--TTTTAACTGAAACTGAAATTTGC--ATTGTTATTGTTGCTTTT-AA-GT--TTG-TTTTT-AAGACTAATATTAGTGAGGCATAGTTGTGAAAGAAGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTCCACAGAATTAT-AT-TG-TTTTTTCAATTGTTTGATTAACAACATATCTGTTTATGTTATGCACATTTGT---GT-ATCTACCTG-GTGGACTCCGGCATGTGCAAATTATGCAAAACAGG--A---TTTTTACAGCTAGGTTATTAT-CATTTGTGTTTAAATAAACAAGTTTTCATAATTCAAACAGACTGACACA--ATACCGACA-TTTTT-TATTA---ACAT-CTTA-TTATAAATGTTGAAA-TT-AAAT-AAGTT---ATTGAACTTTAAACAGAGTAAAGTTTCTTTTTTTGCTCAGT
gi|3 : ACTCAGCAA--AAAAAGAAACTT--TACTCTCCATGAA------TTGGTTATT-TTCAAATTCCTGTTTGACACACTGC-AC----TGATATTTGTACGACTGTGTCAAT-------TGATCATTTTGT-AACAAATCTGTATTTTCATTGGACATTTGAAGTGT-G----TTTTGTA----CCCATAAATTAA---TGATAAAGTGGACAAGGGGCGTAATCAAAAATAACGTT--TTTTAATTGAAACTGAAATTTGC--ATTGTTATTGTTGCTTTTCAA-GT--TTG-TTTTT-AAGACTAATATTAGTGAGGCATAGTTGTGAAACAAGC-NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTCCACAAAATTAT-GT-TGTTTTTTTCAATTGTTTGATTAACAACATTTCTGTTGATGTAATGTACATTTGT---GT-ATCTACCAT-GTGGACTCTGGCATATGCAAATCATTTAAAACAGG--A---TTTTTACAGCTGGGTTATTA-----TTGTGTTTAAATAAGCAAGTTTTCAAAATTCAAACAGACTGACTCA--ATATCCACATTTTTT-TAATA---ACAT-CTAAGTTATAAATGTAGAAA-TT-AAAA-AAGTT---ATTGCACTTTAAACAGAGTAAAGTTTCTTTTTTTGCTCAGTa
gi|4 : TATACTCAGCAA--AAAACAAA--TT--TACTCTCCATGAA------TTGGTTATT-TTCAAAATCCTATTTGACACACTGC-AC----TGATATTAGTATGGCTGTGTCAGG-------TGATCATTTTGT-ACCAAATCTGTATTTTTATTTGACATTTGAAGTGTAG----TTTTGTA----ACCATTAATTAA---TGATAAAGTGGACAAGAGGCGTAATAAAAAATAACGTT--TTTTAACTAAAACTGAAATTTGC--ATTGTTATTATTGCTTTTCAA-GT--TTG-TTTTT-AAGGCTAATATTA-------------GTGAAACAAGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCATTAAAGAATG-ACACAAACTTAT-AT-TGTTTTTTTCAATTGTTTGAATAACAACATTTCTGTTTATGTAATGTACTTTTGT---GT-ATCTACCTG-GTGGATGCCGGCACATGCAAATCATGCAAATCATG--T---TTTTTACAGCTGGATGATTAT-CACTTGTGTTTAAATAAACAAGTTTTCATAATTCAAACAGACTGACGCA--ATACCAACG--TTTT-AATAA---ACAT-CTAAGTTATAATTGTAGAAA-TTAAAAA-AAGTT---ATTGCACTTTAAACAAAGTAAAGTTTCTTTTTTAGCTCAGTat
gi|5 : TATACTCAGCAA--AAAAAGAAACTT--TACTCTCCATGAA------TTGGTTATT-TTCAAAATCCTGTTTAAAACACTAC-AC----TGATATTGGAATGGCTGTGTCAGT-------TGATCATTTTTT-AACAAATCTGTATTTTCATTGGACATTTGAAGTGTAG----TTTTGTA----CCCATAAATTAA---TGATAAAGTGGATAAGGGGTGTAATCAAAAACAACCTT--TTTTTACTGAAACTGAAATTTGC--ATTGTTATTGTTGCTTT-CAA-GT--TTG-TTTTT-AAGACTAATATTAGTGAGGCATAGTTGTGAAAGAAGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTCCACAAAATTAT-AT-TGTTTTTT-CAACTGTTTGATTAACAACATATCTGTTTATGTAATGCACATTTGT---GT-AT----CTA-AT--AC-CTGGTA-----------------ACAGG--A---TTTTTACAGCTAGGTTATTAT-CATTTGTGTTTAAATAAACAAGTTTTCATAATTCAAACAGACTGACACA--ATACCGACA-TTTTT-TATTA---ACAT-CTTA-TTATAAATGTTGAAA-TT-AAAA-AAGTT---ATTGAACTTTAAACAGAGTGAAGTTTCTTTTTTTGCTCAGTa
gi|6 : ACTCAGCAA--AAAAAGAA---T--T--TTTCCATGAA------TTGGTTATT-TTCAAATTCCTGTTTGAAACACTGC-AC----TGATATTTGTATGGCCGTGTCAGT-------TGATCATTTTGT-ATTAAATCTGTATTTTGATTGGACATTTGAAATGT-G----TTTTGTA----CCCATAAATTAA---TGATAAAGTGGACAAGGCGTATAACCAAAAATAAC----------------------ATTTGC--ACTGTTACTGTTGCTTTTCAA-AT--TTG-TTTTT-AAGACTAATATTAGTGAGGCATAGTTGTGAGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCGTATTA-CAAAGTCCACGAAATCAT-GT--ATTTTTTTCAATTGTTTGAATAACAACATTTTTGTTGATGTAATGCACATTTGA---GT-ATTTA-CTGCGTGGACTCCAGCACATGCAAATTATGCAAAACAGG--A---TTTTTACAGCTGGGTTATTAT-CACTTGTGTTCAA------AAGTTTTCATAATTCAAACAGACTGACTCA--ATACAGACATTTTTT-TAATA---ACAT-CTAAGTTATAAATGTAGAAA-TT-GTAA-AAGTT---ATTGCACTTTAAACAGAGTAAAGTTTC-TTTTTTGCTCAGTata
gi|7 : AA------TTGGTTATT-TTCAAAATCCTGTTCGAAACACTGC-AC----TGATATTGGTATGGCTGTGTCAGT-------TGATCATTTTAT-AACAAATCTGTATTTTCATTGGACATTTGAAGTGTAG----TTTTGTA----CCCATAAATTAA---TGATAAAGTGGACAAGGGGTGTAATCAAAAATAACGTT--TTTTAACTGAAACTGAAATTTGC--ATTGTTATTGTTGC-TTTCAA-GT--TTG-TTTTT-AAGACTTATATTAGTGAGGCATAGTTGTGAAAGAAGCAATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATTAT-AT-TG-TTTTTTCAATTGTTTGATTAACAACATATCTGTTTATGTAATGCACATTTGT---GT-ATCTACCTG-GTGGACTCCGGCATGTGCAAATCATGCAAAACAGG--A---TGTTTAAAGCTATGTTATTAT-CATTTGTGGTTAAATAAACAAGTTTTCATAATTCAAACAGACTGACACA--ATACCGACA-TTTTT-TATTA---ACAT-CTCA-TTATAAATGTTGAAA-TT-AAAA-AAGTT---ATTGAACTTTAAACAGAGTAAAGTTTCTTTTTTT-CTCAat
gi|8 : TTCATGAA------TTGATTATT-TTCAAAATCCTGTTCGACACACTAC-AC----TGATATTGGTATGGCTTCGTCATT-------TGATCATTTTGT-AACAAATCTGTATTTTCATTGGACATTGGAAGTGTGG----TTTTGTA----CCCATAAATTAA---TGATGTAGTGGACAAGAGGCATAATAAAAAATAACGTC--TTTTAACTGAAACTGAAATTTGC--ATTGTTATTGTTGCTTTTCAA-GT--TCG-TTTTA-AAGACCAGTATTAGTGAGGCATAGTTGTGAAACAAGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACAAAGTACACAAAATTAT-GT-TA-TTTTTTCAATTGT----TTAACAACATTTCTGTTTATGTAATGTACATTTGT---GT-ATCTACCTG-GTGAACTCCGGCACGTGCAAATCATGT--------------TTTTTACAGCTGGATGATTAT-CACTTGTGTTTAAATAAACATGTTTTCATCATTCAAACAGACTGTCGCA--ATACCAACA--TTTT-TATAA---ACAT-CTAAGATATTACTATAGAAA-TT-AAAA-AAGTT---ATTGCACTTTAAACAGAGAAAAGTTTCTTTTTTTGCTCAGT
gi|9 : TATACTCGGCAACAAAAAAGAAACTT--TACTCCCCATCAA------TTGGTTGTT-TTCAAATTTCTGTACGAAAGACTTC-AA----TGATATTAGTATGGATGAGTCAGTTACTTAGTAATCATTTTGA-AACATATCTGTATTTTCGTTCAATATTTAAAGAGAAGCTTTTTTTTTA----CCTTT---TTAACCTTAATAAATTAGACAAGGGACATAA-CAAAAATAACGTT--TTTTAACTGAAACCAAAAGTTGT--ATTGTTATTGTTGCTTCTCAA-GT--TTGCTTTTT-AAGATTTAAAATAACGAGGCACTGCTGTGAAACAAa
gi|9 : TGTTTGATTAATACCATGCCTGTTTATGTAATGCTTGTTTGT---GT-ATCTACCTG-TTAGACTCTGGCACGGACAAATCAC-C--AACAGA--GTTTTTTTTATGGCTGGATGAGTAT-CCCTCGTGCTTAAATAAATAAGTTTCAACTAGCCAAACCGACTGACGCA--ATACCGATA-TTTTA-TACAT---ACATCCTTATTTCTACATAAAGAAA-TC-AAAA-AAGTTATAATCGCATTTTAAAAAGAGTAAAGTGTATTTTaataatgatgtgtttgattaataccatgcctgtttatgtaatgcttgtttgtgtatctacctgttagactctggcacggacaaatcaccaacagagttttttttatggctggatgagtatccctcgtgcttaaataaataagtttcaactagccaaaccgactgacgcaataccgatattttatacatacatccttatttctacataaagaaatcaaaaaagttataatcgcattttaaaaagagtaaagtgtattttatgctgtcata
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|19 ): ATAACGCATTCGCTTTATACCAACATTTTTACACATACATCTAAATCAAACGTGTAGAAAAAAAA
Alignments
lowQualScore : 77777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777 11
lowQualScore : 44 44 777777 2 1 2 5555 8888888 1 2 5555 5555 444 33 33 2 33 2 2 1 1 11111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 0 3 3 8 2 1 555 3 3 0 888888 1 3 0 1 44 22 3 1 999 3 0 7 3 3 3 999
lowQualScore : .. .. ...... . . . .... ....... . . .... .... ... .. .. . .. . . . . ..................................................................................................... . . . . . . ... . . . ...... . . . . .. .. . . ... . . . . . . ...
lowQualScore : 66 22 777777 7 3 7 7777 7777777 0 7 7777 7777 777 99 77 9 99 9 9 3 9 22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222 6 6 6 8 1 0 444 1 1 4 888888 0 1 2 9 22 33 1 0 666 1 8 3 3 3 3 222
consensus : TATACTCAGCAA--AAAAAGAAACTT--TACTCTCCATGAA------TTGGTTATT-TTCAAAATCCTGTTCGAAACACTGC-AC----TGATATTGGTATGGCTGTGTCAGT-------TGATCATTTTNT-AACAAATCTGTATTTTCATTGGACATTTGAAGTGTAG----TTTTGTA----CCCATAAATTAA---TGATAAAGTGGACAAGGGGCGTAATCAAAAATAACGTT--TTTTAACTGAAACTGAAATTTGC--ATTGTTATTGTTGCTTTTCAA-GT--TTG-TTTTT-AAGACTAATATTAGTGAGGCATAGTTGTGAAACAAGCAATTAAGTAAGNANNACAAGNTCAATANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCNNNTNAACAAAGTCCACAAAATTAT-AT-TGTTTTTTTCAATTGTTTGATTAACAACATNTCTGTTTATGTAATGCACATTTGT---GT-ATCTACCTG-GTGGACTCCGGCACGTGCAAATCATGCAAAACAGG--A---TTTTTACAGCTGGGTNATTAT-CATTTGTGTTTAAATAAACAAGTTTTCATAATTCAAACAGACTGACGCA--ATACCGACA-TTTTT-TATTA---ACAT-CTAAGTTATAAATGTAGAAA-TT-AAAA-AAGTT---ATTGCACTTTAAACAGAGTAAAGTTTCTTTTTTTGCTCAGT
Reference ( family-1777 ) : TATACTCAGCAA--AAAAAGAAACTT--TACTCTCCATGAA------TTGGTTATT-TTCAAAATCCTGTTCGAAACACTGC-AC----TGATATTGGTATGGCTGTGTCAGT-------TGATCATTTTNT-AACAAATCTGTATTTTCATTGGACATTTGAAGTGTAG----TTTTGTA----CCCATAAATTAA---TGATAAAGTGGACAAGGGGCGTAATCAAAAATAACGTT--TTTTAACTGAAACTGAAATTTGC--ATTGTTATTGTTGCTTTTCAA-GT--TTG-TTTTT-AAGACTAATATTAGTGAGGCATAGTTGTGAAACAAGCAATTAAGTAAGAATTACAAGTTTAATANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCNNNTNAACAAAGTCCACAAAATTAT-AT-TGTTTTTTTCAATTGTTTGATTAACAACATNTCTGTTTATGTAATGCACATTTGT---GT-ATCTACCTG-GTGGACTCCGGCACGTGCAAATCATGCAAAACAGG--A---TTTTTACAGCTGGGTNATTAT-CATTTGTGTTTAAATAAACAAGTTTTCATAATTCAAACAGACTGACGCA--ATACCGACA-TTTTT-TATTA---ACAT-CTAAGTTATAAATGTAGAAA-TT-AAAA-AAGTT---ATTGCACTTTAAACAGAGTAAAGTTTCTTTTTTTGCTCAGT
gi|1 : TATACTCAGCAA--AAAAAGAAACTT--TACTCTCCATGAA------TTGGTTATT-TTCAAAATCCTGTTTGAAACACTGC-AC----TGATATTGGTATGGCTGTGTCAGT-------TGATCATTTTTT-AACAAATCTGTATTTTCATTGGACATTTGAAGTGTAG----TTTTGTA----TCCATAAATAAA---TGATAAAGTGGACAAGGGGTGTAATCAAAAATAACGTT--TTTTAACTGAAACTGAAATTTGC--ATTGTTATTGTTGCTTTTCAA-TT--GTG-TTTTT-AAGACTAATATTAGTGAGGCATAGTTGTGAAAGAAGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTCCACAAAATTAT-AT-TGTTTTTTTCAATTGGTTGATTAACAACATATCTGTTTAAGTAATGCACATTTGT---GT-ATCTACCTG-GTTGACTCTGACATGTGCAAATCATGCAAAACAGC--A---TTTTTACAGCTAGGTTATTAT-CATTTGTGTTTAAATAAACAAGTTTTCATAATTCAAACAGACTGACACA--ATACCGACT-TTTTT-TATTA---ACAT-CTTA-TTATAAATGTTGAAA-TT-AAAA-AAGTT---ATTGCACTTTAAACAGAGTAAAGTTTCTTTTTTTGCTCAGT
gi|10 : TAATCAGCAA--AAAAAGACACTT--TACTCTCCATAAA------TTGGTTATT-TTCAAAATCCTGTTTGAAACACTGC-AC----TGACATTGGTATGGATGTGTCAAT-------TTATCATTTTTT-AACAAATCTGTATTTTCATTTGACATTTGAAGTGTAG----TTTTGTA----CCCATAACTTAA---TGATAAAGTGGACAAGGGGCGTAAACAAAAATAATGTT--TTTTAACTGAAACTGAAATTTGC--ATTATTATTGTTGCTTTT--------------------AACTAATTTTAGTGAGGCATAGTTGTGAGACAAGCAA----GTAAGTAAGACAAAGTCAAT
gi|10 : ACATTTCTGTTTATGTAATGCACATTTGT---GT-ATCTACCTG-GTGGACTCCGGCACGTACAAATCATGCAAAACAGG--A---TTTTTACAGCTGGGTTATTAT-CATTTGTGTTTAAATGAATAATTTTTCATAATTCAAACAGACTGACGCA--GGACCGACC-TTTTT-TATTA---ACAT-CTAAGTTATAAAGGTAGAAATTT-AAAA-AAGTT---ACTGCACTTTAAACTGAG---------TTTTTTAGCTCAGTcttccttgaggcgctcttacatttctgtttatgtaatgcacatttgtgtatctacctggtggactccggcacgtacaaatcatgcaaaacaggatttttacagctgggttattatcatttgtgtttaaatgaataatttttcataattcaaacagactgacgcaggaccgaccttttttattaacatctaagttataaaggtagaaatttaaaaaagttactgcactttaaactgagttttttagctcagta
gi|11 : taatcagcaaaaaaagacactttactctccataaattggttattttcaaaatcctgtttgaaacactgcactgacattggtatggatgtgtcaatttatcattttttaacaaatctgtattttcatttgacatttgaagtgtagttttgtacccataacttaatgataaagtggacaaggggcgtaaacaaaaataatgttttttaactgaaactgaaatttgcattattattgttgcttttaactaattttagtgaggcatagttgtgagacaagcaagtaagtaagacaaagtcaatcttccttgaggcgctcttTATACTCAGCAA--AAAAAGAAACTT--TACTCTCCATGAA------TTGGTTATT-TTCAAAATCCTGTTTGAAACACTGC-AC----TGATATTGGTATGGCTGTGTCAGT-------TGATCATTTCTT-AACAAATCTGTATTTTCATTGGACATTTGAAGTGTAG----TTTTGTA----CCCATAAATTAA---TGATAAAATGGACAAGGGGTGTAATCAAAAATAACGTT--TTTTAACTGAAACTGAAATTTGC--ATTGTTATTGTTGCCTTTCAA-GT--TTG-TTTTT-AAGACTAATATTAGTGAGGCATAGTTGTGAAAGAAGCAATTAAGTAAAAATTACAAGTTTAATANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTCCACAAAATTAT-AT-TG-TTTTTTCAATTGTTTGATTAACAACATATCTGTTTATGTAATGCACATTTGT---GT-ATCTACCTG-GTAGACTCTGGCATGTGCAAATCATGCAAAACAGG--A---TTTTTACAGCTa
gi|12 : AAGCTTACTACGC-CCACGTA--------GGTTATTATTCAAGAATTTGTTCGAAACAGTGC-AG----TGACTTTGGCACGGACATGTCATA-------TGTTCATTTTTT-AACAAATCTGTATTTTCATTAAA----TAGAGAGTAG----TTTGGTA----CCCGTAAATAAA---CGAT--ACTTAAC--GTGGCATAATCAAATATAACGTT--TTTAAGTTGAAAATGAAATTTGCCAACTGTTATTGTTGTTGCTCAA-GG--TTG-TTTTT-AAGACTTAAATTAGTGAGGCATCGCTGTTCAACAAa
gi|12 : TCAACAAAGTTAC-CT-TGTGTTTT-CAATTGTTTGGTTAATAATATGTTTGTTTATGTTATGCAAATGTGTCACGTTATCTACCCG-GTGGACTATGGCACGTGCAAATCGTGCAAAACAGG--G---TTTTTACAGCTGGATGATTAT-CGTTTGTGTGTATTTAAACAAG--TTCACAAGCCAAACAGACTTACGTAAGATACCGACA-GTTTTATACAT---ACAT-CTAAGTTGTACATGTAGAagttaccttgtgttttcaattgtttggttaataatatgtttgtttatgttatgcaaatgtgtcacgttatctacccggtggactatggcacgtgcaaatcgtgcaaaacagggtttttacagctggatgattatcgtttgtgtgtatttaaacaagttcacaagccaaacagacttacgtaagataccgacagttttatacatacatctaagttgtacatgtagatgt
gi|13 : aagcttactacgcccacgtaggttattattcaagaatttgttcgaaacagtgcagtgactttggcacggacatgtcatatgttcattttttaacaaatctgtattttcattaaatagagagtagtttggtacccgtaaataaacgatacttaacgtggcataatcaaatataacgtttttaagttgaaaatgaaatttgccaactgttattgttgttgctcaaggttgtttttaagacttaaattagtgaggcatcgctgtTATACTCAGCAA--AAATAGAAACTT--TACTCTCCATGAA------TTGGTTATT-TTCAAAATCCTGTTTGAAACACTGC-AC----TGATATTGGTATGGCTGTGTCAGT-------TGATCGTTTTTT-AACAAATCTGTATTTTCATTGGACATTTGAAGCGTAG----TTTTGTA----CCCATAAATTAA---TGATAAAGTGGACAAGGGGTGTAATCAAAAATAACG-T--TTTTAACTGAAACTGAAATTTGC--ATTGTTATTGTTGCTTTTCAA-GT--TTG-TTTTT-AAGACTAATATTAGTGAGGCATAGTTGTGAAAtgt
gi|14 : ATACTGAGTAA--AAAT-GATACTT--TGCTCTCCATCAAAAATTATTAGTTATT-TTCAAAATTACGTTTGAATCATTGC-AA----TGATAGTGATATGGTTGTATCAGT-------TTATCATTTTAT-AACAAAACTGTATGTTCATTAAACATTTTAAGTGTAG----TTTTATACCGGCCCGTAAGTTAA---CGATAAAGTAGATAAGAGACATAAT-AAAATTAATGTTTGTTTTAATCAAAACTGAAATTTGC--ATTTCTATTGTTGCT
gi|15 : AA--AAAAAGAAACTT--TACTCTTCATAAA------TTGG----T-TTAAAAATCGGGTTCGGAACACTGCGACATTGTGATAGTGGTATAGTTGTGTCGGT-------TGATCAGTTTTTAAACACATCTGTATTTTAATTGAACACTTGTA----AC----CTTTG-------------ATTAA---CGAAACAGAGGACAAGGGGAATAATGATAAATAACGTgctaa
gi|16 : tgtatgctcggcaaaaaaaaaTGT---TT-ATCTGCCTG-GTGGACTCTGGTACGTGCAAACCTTGCAAAACAAGTTT---TTTTTACAGCTGCAAGATTGT-CATTTGTGTTTAAATAGACACATTTCCA-----CAAATAGACTGATAAA--ATACCGACA-ATTTG-TATAAAT-ACAT-CTAAGTTATACATGTAGAA-----AAAA-AAGTT---ATTGCACTT------GAGTAAAGTTTCTTTTTTTGCTCAgt
gi|17 : TTTACAGCTCAATGACCGTTCATTTGTGTTTAAATAAACTAGTTTCCACTAGCCATAAAGACTGGCTCA--ATAATGACA---TTT-TAATACATACAT-CTAAGTTATACATGAAGAAA-TA-AAAATAAATTC--ATT
gi|18 : CTGAAACTTAAGTTTGC--ATTGTTACTATTGCTTCTCAATGTTGTTG-TTTTTAAAAACTAtttgct
gi|18 : CAAAATTACGATATGTTTTT---GATTATCTGGTTCACAACGTGTTTCTTTGTATAATACtaattgctaagcaaaattacgatatgtttttgattatctggttcacaacgtgtttctttgtataatac
gi|2 : ctgaaacttaagtttgcattgttactattgcttctcaatgttgttgtttttaaaaactataattgctaagATACTCAGCAA--AAAAAGAAACTT--TACTCTCCATGAA------TTGGTTATT-TTCAAAATCCTGTTAGAAACACTGC-AC----TGATATTGGTATGGCTGTGTCAGT-------TTATAATTTTTT-AACAAATCTGTATTTTCATTGGACATTTGAAGTGTAG----TTTTGTA----CCCATAAATTAA---TGATAAAGTGGACAAGGGGTGTAATAAAAAATAACGTT--TTTTAACTGAAACTGAAATTTGC--ATTGTTATTGTTGCTTTT-AA-GT--TTG-TTTTT-AAGACTAATATTAGTGAGGCATAGTTGTGAAAGAAGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTCCACAGAATTAT-AT-TG-TTTTTTCAATTGTTTGATTAACAACATATCTGTTTATGTTATGCACATTTGT---GT-ATCTACCTG-GTGGACTCCGGCATGTGCAAATTATGCAAAACAGG--A---TTTTTACAGCTAGGTTATTAT-CATTTGTGTTTAAATAAACAAGTTTTCATAATTCAAACAGACTGACACA--ATACCGACA-TTTTT-TATTA---ACAT-CTTA-TTATAAATGTTGAAA-TT-AAAT-AAGTT---ATTGAACTTTAAACAGAGTAAAGTTTCTTTTTTTGCTCAGT
gi|3 : ACTCAGCAA--AAAAAGAAACTT--TACTCTCCATGAA------TTGGTTATT-TTCAAATTCCTGTTTGACACACTGC-AC----TGATATTTGTACGACTGTGTCAAT-------TGATCATTTTGT-AACAAATCTGTATTTTCATTGGACATTTGAAGTGT-G----TTTTGTA----CCCATAAATTAA---TGATAAAGTGGACAAGGGGCGTAATCAAAAATAACGTT--TTTTAATTGAAACTGAAATTTGC--ATTGTTATTGTTGCTTTTCAA-GT--TTG-TTTTT-AAGACTAATATTAGTGAGGCATAGTTGTGAAACAAGC-NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTCCACAAAATTAT-GT-TGTTTTTTTCAATTGTTTGATTAACAACATTTCTGTTGATGTAATGTACATTTGT---GT-ATCTACCAT-GTGGACTCTGGCATATGCAAATCATTTAAAACAGG--A---TTTTTACAGCTGGGTTATTA-----TTGTGTTTAAATAAGCAAGTTTTCAAAATTCAAACAGACTGACTCA--ATATCCACATTTTTT-TAATA---ACAT-CTAAGTTATAAATGTAGAAA-TT-AAAA-AAGTT---ATTGCACTTTAAACAGAGTAAAGTTTCTTTTTTTGCTCAGTa
gi|4 : TATACTCAGCAA--AAAACAAA--TT--TACTCTCCATGAA------TTGGTTATT-TTCAAAATCCTATTTGACACACTGC-AC----TGATATTAGTATGGCTGTGTCAGG-------TGATCATTTTGT-ACCAAATCTGTATTTTTATTTGACATTTGAAGTGTAG----TTTTGTA----ACCATTAATTAA---TGATAAAGTGGACAAGAGGCGTAATAAAAAATAACGTT--TTTTAACTAAAACTGAAATTTGC--ATTGTTATTATTGCTTTTCAA-GT--TTG-TTTTT-AAGGCTAATATTA-------------GTGAAACAAGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCATTAAAGAATG-ACACAAACTTAT-AT-TGTTTTTTTCAATTGTTTGAATAACAACATTTCTGTTTATGTAATGTACTTTTGT---GT-ATCTACCTG-GTGGATGCCGGCACATGCAAATCATGCAAATCATG--T---TTTTTACAGCTGGATGATTAT-CACTTGTGTTTAAATAAACAAGTTTTCATAATTCAAACAGACTGACGCA--ATACCAACG--TTTT-AATAA---ACAT-CTAAGTTATAATTGTAGAAA-TTAAAAA-AAGTT---ATTGCACTTTAAACAAAGTAAAGTTTCTTTTTTAGCTCAGTat
gi|5 : TATACTCAGCAA--AAAAAGAAACTT--TACTCTCCATGAA------TTGGTTATT-TTCAAAATCCTGTTTAAAACACTAC-AC----TGATATTGGAATGGCTGTGTCAGT-------TGATCATTTTTT-AACAAATCTGTATTTTCATTGGACATTTGAAGTGTAG----TTTTGTA----CCCATAAATTAA---TGATAAAGTGGATAAGGGGTGTAATCAAAAACAACCTT--TTTTTACTGAAACTGAAATTTGC--ATTGTTATTGTTGCTTT-CAA-GT--TTG-TTTTT-AAGACTAATATTAGTGAGGCATAGTTGTGAAAGAAGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTCCACAAAATTAT-AT-TGTTTTTT-CAACTGTTTGATTAACAACATATCTGTTTATGTAATGCACATTTGT---GT-AT----CTA-AT--AC-CTGGTA-----------------ACAGG--A---TTTTTACAGCTAGGTTATTAT-CATTTGTGTTTAAATAAACAAGTTTTCATAATTCAAACAGACTGACACA--ATACCGACA-TTTTT-TATTA---ACAT-CTTA-TTATAAATGTTGAAA-TT-AAAA-AAGTT---ATTGAACTTTAAACAGAGTGAAGTTTCTTTTTTTGCTCAGTa
gi|6 : ACTCAGCAA--AAAAAGAA---T--T--TTTCCATGAA------TTGGTTATT-TTCAAATTCCTGTTTGAAACACTGC-AC----TGATATTTGTATGGCCGTGTCAGT-------TGATCATTTTGT-ATTAAATCTGTATTTTGATTGGACATTTGAAATGT-G----TTTTGTA----CCCATAAATTAA---TGATAAAGTGGACAAGGCGTATAACCAAAAATAAC----------------------ATTTGC--ACTGTTACTGTTGCTTTTCAA-AT--TTG-TTTTT-AAGACTAATATTAGTGAGGCATAGTTGTGAGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCGTATTA-CAAAGTCCACGAAATCAT-GT--ATTTTTTTCAATTGTTTGAATAACAACATTTTTGTTGATGTAATGCACATTTGA---GT-ATTTA-CTGCGTGGACTCCAGCACATGCAAATTATGCAAAACAGG--A---TTTTTACAGCTGGGTTATTAT-CACTTGTGTTCAA------AAGTTTTCATAATTCAAACAGACTGACTCA--ATACAGACATTTTTT-TAATA---ACAT-CTAAGTTATAAATGTAGAAA-TT-GTAA-AAGTT---ATTGCACTTTAAACAGAGTAAAGTTTC-TTTTTTGCTCAGTata
gi|7 : AA------TTGGTTATT-TTCAAAATCCTGTTCGAAACACTGC-AC----TGATATTGGTATGGCTGTGTCAGT-------TGATCATTTTAT-AACAAATCTGTATTTTCATTGGACATTTGAAGTGTAG----TTTTGTA----CCCATAAATTAA---TGATAAAGTGGACAAGGGGTGTAATCAAAAATAACGTT--TTTTAACTGAAACTGAAATTTGC--ATTGTTATTGTTGC-TTTCAA-GT--TTG-TTTTT-AAGACTTATATTAGTGAGGCATAGTTGTGAAAGAAGCAATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATTAT-AT-TG-TTTTTTCAATTGTTTGATTAACAACATATCTGTTTATGTAATGCACATTTGT---GT-ATCTACCTG-GTGGACTCCGGCATGTGCAAATCATGCAAAACAGG--A---TGTTTAAAGCTATGTTATTAT-CATTTGTGGTTAAATAAACAAGTTTTCATAATTCAAACAGACTGACACA--ATACCGACA-TTTTT-TATTA---ACAT-CTCA-TTATAAATGTTGAAA-TT-AAAA-AAGTT---ATTGAACTTTAAACAGAGTAAAGTTTCTTTTTTT-CTCAat
gi|8 : TTCATGAA------TTGATTATT-TTCAAAATCCTGTTCGACACACTAC-AC----TGATATTGGTATGGCTTCGTCATT-------TGATCATTTTGT-AACAAATCTGTATTTTCATTGGACATTGGAAGTGTGG----TTTTGTA----CCCATAAATTAA---TGATGTAGTGGACAAGAGGCATAATAAAAAATAACGTC--TTTTAACTGAAACTGAAATTTGC--ATTGTTATTGTTGCTTTTCAA-GT--TCG-TTTTA-AAGACCAGTATTAGTGAGGCATAGTTGTGAAACAAGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACAAAGTACACAAAATTAT-GT-TA-TTTTTTCAATTGT----TTAACAACATTTCTGTTTATGTAATGTACATTTGT---GT-ATCTACCTG-GTGAACTCCGGCACGTGCAAATCATGT--------------TTTTTACAGCTGGATGATTAT-CACTTGTGTTTAAATAAACATGTTTTCATCATTCAAACAGACTGTCGCA--ATACCAACA--TTTT-TATAA---ACAT-CTAAGATATTACTATAGAAA-TT-AAAA-AAGTT---ATTGCACTTTAAACAGAGAAAAGTTTCTTTTTTTGCTCAGT
gi|9 : TATACTCGGCAACAAAAAAGAAACTT--TACTCCCCATCAA------TTGGTTGTT-TTCAAATTTCTGTACGAAAGACTTC-AA----TGATATTAGTATGGATGAGTCAGTTACTTAGTAATCATTTTGA-AACATATCTGTATTTTCGTTCAATATTTAAAGAGAAGCTTTTTTTTTA----CCTTT---TTAACCTTAATAAATTAGACAAGGGACATAA-CAAAAATAACGTT--TTTTAACTGAAACCAAAAGTTGT--ATTGTTATTGTTGCTTCTCAA-GT--TTGCTTTTT-AAGATTTAAAATAACGAGGCACTGCTGTGAAACAAa
gi|9 : TGTTTGATTAATACCATGCCTGTTTATGTAATGCTTGTTTGT---GT-ATCTACCTG-TTAGACTCTGGCACGGACAAATCAC-C--AACAGA--GTTTTTTTTATGGCTGGATGAGTAT-CCCTCGTGCTTAAATAAATAAGTTTCAACTAGCCAAACCGACTGACGCA--ATACCGATA-TTTTA-TACAT---ACATCCTTATTTCTACATAAAGAAA-TC-AAAA-AAGTTATAATCGCATTTTAAAAAGAGTAAAGTGTATTTTaataatgatgtgtttgattaataccatgcctgtttatgtaatgcttgtttgtgtatctacctgttagactctggcacggacaaatcaccaacagagttttttttatggctggatgagtatccctcgtgcttaaataaataagtttcaactagccaaaccgactgacgcaataccgatattttatacatacatccttatttctacataaagaaatcaaaaaagttataatcgcattttaaaaagagtaaagtgtattttatgctgtcata
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|19 ): ATAACGCATTCGCTTTATACCAACATTTTTACACATACATCTAAATCAAACGTGTAGAAAAAAAA
Alignments
lowQualScore : 777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777 11
lowQualScore : 44 44 777777 2 1 2 5555 8888888 1 2 5555 5555 444 33 33 2 33 2 2 1 1 0 555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555 0 3 3 8 2 1 555 3 3 0 888888 1 3 0 1 44 22 3 1 999 3 0 7 3 3 3 999
lowQualScore : .. .. ...... . . . .... ....... . . .... .... ... .. .. . .. . . . . . ............................................................................................. . . . . . . ... . . . ...... . . . . .. .. . . ... . . . . . . ...
lowQualScore : 66 22 777777 7 3 7 7777 7777777 0 7 7777 7777 777 99 77 9 99 9 9 3 9 4 333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333 6 6 6 8 1 0 444 1 1 4 888888 0 1 2 9 22 33 1 0 666 1 8 3 3 3 3 222
consensus : TATACTCAGCAA--AAAAAGAAACTT--TACTCTCCATGAA------TTGGTTATT-TTCAAAATCCTGTTCGAAACACTGC-AC----TGATATTGGTATGGCTGTGTCAGT-------TGATCATTTTNT-AACAAATCTGTATTTTCATTGGACATTTGAAGTGTAG----TTTTGTA----CCCATAAATTAA---TGATAAAGTGGACAAGGGGCGTAATCAAAAATAACGTT--TTTTAACTGAAACTGAAATTTGC--ATTGTTATTGTTGCTTTTCAA-GT--TTG-TTTTT-AAGACTAATATTAGTGAGGCATAGTTGTGAAACAAGCAATTAAGTAAGAATTACAAGNTCAATANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCNNNTNAACAAAGTCCACAAAATTAT-AT-TGTTTTTTTCAATTGTTTGATTAACAACATNTCTGTTTATGTAATGCACATTTGT---GT-ATCTACCTG-GTGGACTCCGGCACGTGCAAATCATGCAAAACAGG--A---TTTTTACAGCTGGGTNATTAT-CATTTGTGTTTAAATAAACAAGTTTTCATAATTCAAACAGACTGACGCA--ATACCGACA-TTTTT-TATTA---ACAT-CTAAGTTATAAATGTAGAAA-TT-AAAA-AAGTT---ATTGCACTTTAAACAGAGTAAAGTTTCTTTTTTTGCTCAGT
Reference ( family-1777 ) : TATACTCAGCAA--AAAAAGAAACTT--TACTCTCCATGAA------TTGGTTATT-TTCAAAATCCTGTTCGAAACACTGC-AC----TGATATTGGTATGGCTGTGTCAGT-------TGATCATTTTNT-AACAAATCTGTATTTTCATTGGACATTTGAAGTGTAG----TTTTGTA----CCCATAAATTAA---TGATAAAGTGGACAAGGGGCGTAATCAAAAATAACGTT--TTTTAACTGAAACTGAAATTTGC--ATTGTTATTGTTGCTTTTCAA-GT--TTG-TTTTT-AAGACTAATATTAGTGAGGCATAGTTGTGAAACAAGCAATTAAGTAAGNANNACAAGNTCAATANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCNNNTNAACAAAGTCCACAAAATTAT-AT-TGTTTTTTTCAATTGTTTGATTAACAACATNTCTGTTTATGTAATGCACATTTGT---GT-ATCTACCTG-GTGGACTCCGGCACGTGCAAATCATGCAAAACAGG--A---TTTTTACAGCTGGGTNATTAT-CATTTGTGTTTAAATAAACAAGTTTTCATAATTCAAACAGACTGACGCA--ATACCGACA-TTTTT-TATTA---ACAT-CTAAGTTATAAATGTAGAAA-TT-AAAA-AAGTT---ATTGCACTTTAAACAGAGTAAAGTTTCTTTTTTTGCTCAGT
gi|1 : TATACTCAGCAA--AAAAAGAAACTT--TACTCTCCATGAA------TTGGTTATT-TTCAAAATCCTGTTTGAAACACTGC-AC----TGATATTGGTATGGCTGTGTCAGT-------TGATCATTTTTT-AACAAATCTGTATTTTCATTGGACATTTGAAGTGTAG----TTTTGTA----TCCATAAATAAA---TGATAAAGTGGACAAGGGGTGTAATCAAAAATAACGTT--TTTTAACTGAAACTGAAATTTGC--ATTGTTATTGTTGCTTTTCAA-TT--GTG-TTTTT-AAGACTAATATTAGTGAGGCATAGTTGTGAAAGAAGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTCCACAAAATTAT-AT-TGTTTTTTTCAATTGGTTGATTAACAACATATCTGTTTAAGTAATGCACATTTGT---GT-ATCTACCTG-GTTGACTCTGACATGTGCAAATCATGCAAAACAGC--A---TTTTTACAGCTAGGTTATTAT-CATTTGTGTTTAAATAAACAAGTTTTCATAATTCAAACAGACTGACACA--ATACCGACT-TTTTT-TATTA---ACAT-CTTA-TTATAAATGTTGAAA-TT-AAAA-AAGTT---ATTGCACTTTAAACAGAGTAAAGTTTCTTTTTTTGCTCAGT
gi|10 : TAATCAGCAA--AAAAAGACACTT--TACTCTCCATAAA------TTGGTTATT-TTCAAAATCCTGTTTGAAACACTGC-AC----TGACATTGGTATGGATGTGTCAAT-------TTATCATTTTTT-AACAAATCTGTATTTTCATTTGACATTTGAAGTGTAG----TTTTGTA----CCCATAACTTAA---TGATAAAGTGGACAAGGGGCGTAAACAAAAATAATGTT--TTTTAACTGAAACTGAAATTTGC--ATTATTATTGTTGCTTTT--------------------AACTAATTTTAGTGAGGCATAGTTGTGAGACAAGCAAGTAAGTAAG----ACAAAGTCAAT
gi|10 : ACATTTCTGTTTATGTAATGCACATTTGT---GT-ATCTACCTG-GTGGACTCCGGCACGTACAAATCATGCAAAACAGG--A---TTTTTACAGCTGGGTTATTAT-CATTTGTGTTTAAATGAATAATTTTTCATAATTCAAACAGACTGACGCA--GGACCGACC-TTTTT-TATTA---ACAT-CTAAGTTATAAAGGTAGAAATTT-AAAA-AAGTT---ACTGCACTTTAAACTGAG---------TTTTTTAGCTCAGTcttccttgaggcgctcttacatttctgtttatgtaatgcacatttgtgtatctacctggtggactccggcacgtacaaatcatgcaaaacaggatttttacagctgggttattatcatttgtgtttaaatgaataatttttcataattcaaacagactgacgcaggaccgaccttttttattaacatctaagttataaaggtagaaatttaaaaaagttactgcactttaaactgagttttttagctcagta
gi|11 : taatcagcaaaaaaagacactttactctccataaattggttattttcaaaatcctgtttgaaacactgcactgacattggtatggatgtgtcaatttatcattttttaacaaatctgtattttcatttgacatttgaagtgtagttttgtacccataacttaatgataaagtggacaaggggcgtaaacaaaaataatgttttttaactgaaactgaaatttgcattattattgttgcttttaactaattttagtgaggcatagttgtgagacaagcaagtaagtaagacaaagtcaatcttccttgaggcgctcttTATACTCAGCAA--AAAAAGAAACTT--TACTCTCCATGAA------TTGGTTATT-TTCAAAATCCTGTTTGAAACACTGC-AC----TGATATTGGTATGGCTGTGTCAGT-------TGATCATTTCTT-AACAAATCTGTATTTTCATTGGACATTTGAAGTGTAG----TTTTGTA----CCCATAAATTAA---TGATAAAATGGACAAGGGGTGTAATCAAAAATAACGTT--TTTTAACTGAAACTGAAATTTGC--ATTGTTATTGTTGCCTTTCAA-GT--TTG-TTTTT-AAGACTAATATTAGTGAGGCATAGTTGTGAAAGAAGCAATTAAGTAAAAATTACAAGTTTAATANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTCCACAAAATTAT-AT-TG-TTTTTTCAATTGTTTGATTAACAACATATCTGTTTATGTAATGCACATTTGT---GT-ATCTACCTG-GTAGACTCTGGCATGTGCAAATCATGCAAAACAGG--A---TTTTTACAGCTa
gi|12 : AAGCTTACTACGC-CCACGTA--------GGTTATTATTCAAGAATTTGTTCGAAACAGTGC-AG----TGACTTTGGCACGGACATGTCATA-------TGTTCATTTTTT-AACAAATCTGTATTTTCATTAAA----TAGAGAGTAG----TTTGGTA----CCCGTAAATAAA---CGAT--ACTTAAC--GTGGCATAATCAAATATAACGTT--TTTAAGTTGAAAATGAAATTTGCCAACTGTTATTGTTGTTGCTCAA-GG--TTG-TTTTT-AAGACTTAAATTAGTGAGGCATCGCTGTTCAACAAa
gi|12 : TCAACAAAGTTAC-CT-TGTGTTTT-CAATTGTTTGGTTAATAATATGTTTGTTTATGTTATGCAAATGTGTCACGTTATCTACCCG-GTGGACTATGGCACGTGCAAATCGTGCAAAACAGG--G---TTTTTACAGCTGGATGATTAT-CGTTTGTGTGTATTTAAACAAG--TTCACAAGCCAAACAGACTTACGTAAGATACCGACA-GTTTTATACAT---ACAT-CTAAGTTGTACATGTAGAagttaccttgtgttttcaattgtttggttaataatatgtttgtttatgttatgcaaatgtgtcacgttatctacccggtggactatggcacgtgcaaatcgtgcaaaacagggtttttacagctggatgattatcgtttgtgtgtatttaaacaagttcacaagccaaacagacttacgtaagataccgacagttttatacatacatctaagttgtacatgtagatgt
gi|13 : aagcttactacgcccacgtaggttattattcaagaatttgttcgaaacagtgcagtgactttggcacggacatgtcatatgttcattttttaacaaatctgtattttcattaaatagagagtagtttggtacccgtaaataaacgatacttaacgtggcataatcaaatataacgtttttaagttgaaaatgaaatttgccaactgttattgttgttgctcaaggttgtttttaagacttaaattagtgaggcatcgctgtTATACTCAGCAA--AAATAGAAACTT--TACTCTCCATGAA------TTGGTTATT-TTCAAAATCCTGTTTGAAACACTGC-AC----TGATATTGGTATGGCTGTGTCAGT-------TGATCGTTTTTT-AACAAATCTGTATTTTCATTGGACATTTGAAGCGTAG----TTTTGTA----CCCATAAATTAA---TGATAAAGTGGACAAGGGGTGTAATCAAAAATAACG-T--TTTTAACTGAAACTGAAATTTGC--ATTGTTATTGTTGCTTTTCAA-GT--TTG-TTTTT-AAGACTAATATTAGTGAGGCATAGTTGTGAAAtgt
gi|14 : ATACTGAGTAA--AAAT-GATACTT--TGCTCTCCATCAAAAATTATTAGTTATT-TTCAAAATTACGTTTGAATCATTGC-AA----TGATAGTGATATGGTTGTATCAGT-------TTATCATTTTAT-AACAAAACTGTATGTTCATTAAACATTTTAAGTGTAG----TTTTATACCGGCCCGTAAGTTAA---CGATAAAGTAGATAAGAGACATAAT-AAAATTAATGTTTGTTTTAATCAAAACTGAAATTTGC--ATTTCTATTGTTGCT
gi|15 : AA--AAAAAGAAACTT--TACTCTTCATAAA------TTGG----T-TTAAAAATCGGGTTCGGAACACTGCGACATTGTGATAGTGGTATAGTTGTGTCGGT-------TGATCAGTTTTTAAACACATCTGTATTTTAATTGAACACTTGTA----AC----CTTTG-------------ATTAA---CGAAACAGAGGACAAGGGGAATAATGATAAATAACGTgctaa
gi|16 : tgtatgctcggcaaaaaaaaaTGT---TT-ATCTGCCTG-GTGGACTCTGGTACGTGCAAACCTTGCAAAACAAGTTT---TTTTTACAGCTGCAAGATTGT-CATTTGTGTTTAAATAGACACATTTCCA-----CAAATAGACTGATAAA--ATACCGACA-ATTTG-TATAAAT-ACAT-CTAAGTTATACATGTAGAA-----AAAA-AAGTT---ATTGCACTT------GAGTAAAGTTTCTTTTTTTGCTCAgt
gi|17 : TTTACAGCTCAATGACCGTTCATTTGTGTTTAAATAAACTAGTTTCCACTAGCCATAAAGACTGGCTCA--ATAATGACA---TTT-TAATACATACAT-CTAAGTTATACATGAAGAAA-TA-AAAATAAATTC--ATT
gi|18 : CTGAAACTTAAGTTTGC--ATTGTTACTATTGCTTCTCAATGTTGTTG-TTTTTAAAAACTAtttgct
gi|18 : CAAAATTACGATATGTTTTT---GATTATCTGGTTCACAACGTGTTTCTTTGTATAATACtaattgctaagcaaaattacgatatgtttttgattatctggttcacaacgtgtttctttgtataatac
gi|2 : ctgaaacttaagtttgcattgttactattgcttctcaatgttgttgtttttaaaaactataattgctaagATACTCAGCAA--AAAAAGAAACTT--TACTCTCCATGAA------TTGGTTATT-TTCAAAATCCTGTTAGAAACACTGC-AC----TGATATTGGTATGGCTGTGTCAGT-------TTATAATTTTTT-AACAAATCTGTATTTTCATTGGACATTTGAAGTGTAG----TTTTGTA----CCCATAAATTAA---TGATAAAGTGGACAAGGGGTGTAATAAAAAATAACGTT--TTTTAACTGAAACTGAAATTTGC--ATTGTTATTGTTGCTTTT-AA-GT--TTG-TTTTT-AAGACTAATATTAGTGAGGCATAGTTGTGAAAGAAGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTCCACAGAATTAT-AT-TG-TTTTTTCAATTGTTTGATTAACAACATATCTGTTTATGTTATGCACATTTGT---GT-ATCTACCTG-GTGGACTCCGGCATGTGCAAATTATGCAAAACAGG--A---TTTTTACAGCTAGGTTATTAT-CATTTGTGTTTAAATAAACAAGTTTTCATAATTCAAACAGACTGACACA--ATACCGACA-TTTTT-TATTA---ACAT-CTTA-TTATAAATGTTGAAA-TT-AAAT-AAGTT---ATTGAACTTTAAACAGAGTAAAGTTTCTTTTTTTGCTCAGT
gi|3 : ACTCAGCAA--AAAAAGAAACTT--TACTCTCCATGAA------TTGGTTATT-TTCAAATTCCTGTTTGACACACTGC-AC----TGATATTTGTACGACTGTGTCAAT-------TGATCATTTTGT-AACAAATCTGTATTTTCATTGGACATTTGAAGTGT-G----TTTTGTA----CCCATAAATTAA---TGATAAAGTGGACAAGGGGCGTAATCAAAAATAACGTT--TTTTAATTGAAACTGAAATTTGC--ATTGTTATTGTTGCTTTTCAA-GT--TTG-TTTTT-AAGACTAATATTAGTGAGGCATAGTTGTGAAACAAGC-NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTCCACAAAATTAT-GT-TGTTTTTTTCAATTGTTTGATTAACAACATTTCTGTTGATGTAATGTACATTTGT---GT-ATCTACCAT-GTGGACTCTGGCATATGCAAATCATTTAAAACAGG--A---TTTTTACAGCTGGGTTATTA-----TTGTGTTTAAATAAGCAAGTTTTCAAAATTCAAACAGACTGACTCA--ATATCCACATTTTTT-TAATA---ACAT-CTAAGTTATAAATGTAGAAA-TT-AAAA-AAGTT---ATTGCACTTTAAACAGAGTAAAGTTTCTTTTTTTGCTCAGTa
gi|4 : TATACTCAGCAA--AAAACAAA--TT--TACTCTCCATGAA------TTGGTTATT-TTCAAAATCCTATTTGACACACTGC-AC----TGATATTAGTATGGCTGTGTCAGG-------TGATCATTTTGT-ACCAAATCTGTATTTTTATTTGACATTTGAAGTGTAG----TTTTGTA----ACCATTAATTAA---TGATAAAGTGGACAAGAGGCGTAATAAAAAATAACGTT--TTTTAACTAAAACTGAAATTTGC--ATTGTTATTATTGCTTTTCAA-GT--TTG-TTTTT-AAGGCTAATATTA-------------GTGAAACAAGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCATTAAAGAATG-ACACAAACTTAT-AT-TGTTTTTTTCAATTGTTTGAATAACAACATTTCTGTTTATGTAATGTACTTTTGT---GT-ATCTACCTG-GTGGATGCCGGCACATGCAAATCATGCAAATCATG--T---TTTTTACAGCTGGATGATTAT-CACTTGTGTTTAAATAAACAAGTTTTCATAATTCAAACAGACTGACGCA--ATACCAACG--TTTT-AATAA---ACAT-CTAAGTTATAATTGTAGAAA-TTAAAAA-AAGTT---ATTGCACTTTAAACAAAGTAAAGTTTCTTTTTTAGCTCAGTat
gi|5 : TATACTCAGCAA--AAAAAGAAACTT--TACTCTCCATGAA------TTGGTTATT-TTCAAAATCCTGTTTAAAACACTAC-AC----TGATATTGGAATGGCTGTGTCAGT-------TGATCATTTTTT-AACAAATCTGTATTTTCATTGGACATTTGAAGTGTAG----TTTTGTA----CCCATAAATTAA---TGATAAAGTGGATAAGGGGTGTAATCAAAAACAACCTT--TTTTTACTGAAACTGAAATTTGC--ATTGTTATTGTTGCTTT-CAA-GT--TTG-TTTTT-AAGACTAATATTAGTGAGGCATAGTTGTGAAAGAAGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTCCACAAAATTAT-AT-TGTTTTTT-CAACTGTTTGATTAACAACATATCTGTTTATGTAATGCACATTTGT---GT-AT----CTA-AT--AC-CTGGTA-----------------ACAGG--A---TTTTTACAGCTAGGTTATTAT-CATTTGTGTTTAAATAAACAAGTTTTCATAATTCAAACAGACTGACACA--ATACCGACA-TTTTT-TATTA---ACAT-CTTA-TTATAAATGTTGAAA-TT-AAAA-AAGTT---ATTGAACTTTAAACAGAGTGAAGTTTCTTTTTTTGCTCAGTa
gi|6 : ACTCAGCAA--AAAAAGAA---T--T--TTTCCATGAA------TTGGTTATT-TTCAAATTCCTGTTTGAAACACTGC-AC----TGATATTTGTATGGCCGTGTCAGT-------TGATCATTTTGT-ATTAAATCTGTATTTTGATTGGACATTTGAAATGT-G----TTTTGTA----CCCATAAATTAA---TGATAAAGTGGACAAGGCGTATAACCAAAAATAAC----------------------ATTTGC--ACTGTTACTGTTGCTTTTCAA-AT--TTG-TTTTT-AAGACTAATATTAGTGAGGCATAGTTGTGAGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCGTATTA-CAAAGTCCACGAAATCAT-GT--ATTTTTTTCAATTGTTTGAATAACAACATTTTTGTTGATGTAATGCACATTTGA---GT-ATTTA-CTGCGTGGACTCCAGCACATGCAAATTATGCAAAACAGG--A---TTTTTACAGCTGGGTTATTAT-CACTTGTGTTCAA------AAGTTTTCATAATTCAAACAGACTGACTCA--ATACAGACATTTTTT-TAATA---ACAT-CTAAGTTATAAATGTAGAAA-TT-GTAA-AAGTT---ATTGCACTTTAAACAGAGTAAAGTTTC-TTTTTTGCTCAGTata
gi|7 : AA------TTGGTTATT-TTCAAAATCCTGTTCGAAACACTGC-AC----TGATATTGGTATGGCTGTGTCAGT-------TGATCATTTTAT-AACAAATCTGTATTTTCATTGGACATTTGAAGTGTAG----TTTTGTA----CCCATAAATTAA---TGATAAAGTGGACAAGGGGTGTAATCAAAAATAACGTT--TTTTAACTGAAACTGAAATTTGC--ATTGTTATTGTTGC-TTTCAA-GT--TTG-TTTTT-AAGACTTATATTAGTGAGGCATAGTTGTGAAAGAAGCAATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATTAT-AT-TG-TTTTTTCAATTGTTTGATTAACAACATATCTGTTTATGTAATGCACATTTGT---GT-ATCTACCTG-GTGGACTCCGGCATGTGCAAATCATGCAAAACAGG--A---TGTTTAAAGCTATGTTATTAT-CATTTGTGGTTAAATAAACAAGTTTTCATAATTCAAACAGACTGACACA--ATACCGACA-TTTTT-TATTA---ACAT-CTCA-TTATAAATGTTGAAA-TT-AAAA-AAGTT---ATTGAACTTTAAACAGAGTAAAGTTTCTTTTTTT-CTCAat
gi|8 : TTCATGAA------TTGATTATT-TTCAAAATCCTGTTCGACACACTAC-AC----TGATATTGGTATGGCTTCGTCATT-------TGATCATTTTGT-AACAAATCTGTATTTTCATTGGACATTGGAAGTGTGG----TTTTGTA----CCCATAAATTAA---TGATGTAGTGGACAAGAGGCATAATAAAAAATAACGTC--TTTTAACTGAAACTGAAATTTGC--ATTGTTATTGTTGCTTTTCAA-GT--TCG-TTTTA-AAGACCAGTATTAGTGAGGCATAGTTGTGAAACAAGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACAAAGTACACAAAATTAT-GT-TA-TTTTTTCAATTGT----TTAACAACATTTCTGTTTATGTAATGTACATTTGT---GT-ATCTACCTG-GTGAACTCCGGCACGTGCAAATCATGT--------------TTTTTACAGCTGGATGATTAT-CACTTGTGTTTAAATAAACATGTTTTCATCATTCAAACAGACTGTCGCA--ATACCAACA--TTTT-TATAA---ACAT-CTAAGATATTACTATAGAAA-TT-AAAA-AAGTT---ATTGCACTTTAAACAGAGAAAAGTTTCTTTTTTTGCTCAGT
gi|9 : TATACTCGGCAACAAAAAAGAAACTT--TACTCCCCATCAA------TTGGTTGTT-TTCAAATTTCTGTACGAAAGACTTC-AA----TGATATTAGTATGGATGAGTCAGTTACTTAGTAATCATTTTGA-AACATATCTGTATTTTCGTTCAATATTTAAAGAGAAGCTTTTTTTTTA----CCTTT---TTAACCTTAATAAATTAGACAAGGGACATAA-CAAAAATAACGTT--TTTTAACTGAAACCAAAAGTTGT--ATTGTTATTGTTGCTTCTCAA-GT--TTGCTTTTT-AAGATTTAAAATAACGAGGCACTGCTGTGAAACAAa
gi|9 : TGTTTGATTAATACCATGCCTGTTTATGTAATGCTTGTTTGT---GT-ATCTACCTG-TTAGACTCTGGCACGGACAAATCAC-C--AACAGA--GTTTTTTTTATGGCTGGATGAGTAT-CCCTCGTGCTTAAATAAATAAGTTTCAACTAGCCAAACCGACTGACGCA--ATACCGATA-TTTTA-TACAT---ACATCCTTATTTCTACATAAAGAAA-TC-AAAA-AAGTTATAATCGCATTTTAAAAAGAGTAAAGTGTATTTTaataatgatgtgtttgattaataccatgcctgtttatgtaatgcttgtttgtgtatctacctgttagactctggcacggacaaatcaccaacagagttttttttatggctggatgagtatccctcgtgcttaaataaataagtttcaactagccaaaccgactgacgcaataccgatattttatacatacatccttatttctacataaagaaatcaaaaaagttataatcgcattttaaaaagagtaaagtgtattttatgctgtcata
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|19 ): ATAACGCATTCGCTTTATACCAACATTTTTACACATACATCTAAATCAAACGTGTAGAAAAAAAA
Alignments
lowQualScore : 777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777 11
lowQualScore : 44 44 777777 2 1 2 5555 8888888 1 2 5555 5555 444 33 33 2 33 2 2 1 1 0 222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222 0 3 3 8 2 1 555 3 3 0 888888 1 3 0 1 44 22 3 1 999 3 0 7 3 3 3 999
lowQualScore : .. .. ...... . . . .... ....... . . .... .... ... .. .. . .. . . . . . ............................................................................................. . . . . . . ... . . . ...... . . . . .. .. . . ... . . . . . . ...
lowQualScore : 66 22 777777 7 3 7 7777 7777777 0 7 7777 7777 777 99 77 9 99 9 9 3 9 4 333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333 6 6 6 8 1 0 444 1 1 4 888888 0 1 2 9 22 33 1 0 666 1 8 3 3 3 3 222
consensus : TATACTCAGCAA--AAAAAGAAACTT--TACTCTCCATGAA------TTGGTTATT-TTCAAAATCCTGTTCGAAACACTGC-AC----TGATATTGGTATGGCTGTGTCAGT-------TGATCATTTTNT-AACAAATCTGTATTTTCATTGGACATTTGAAGTGTAG----TTTTGTA----CCCATAAATTAA---TGATAAAGTGGACAAGGGGCGTAATCAAAAATAACGTT--TTTTAACTGAAACTGAAATTTGC--ATTGTTATTGTTGCTTTTCAA-GT--TTG-TTTTT-AAGACTAATATTAGTGAGGCATAGTTGTGAAACAAGCAATTAAGTAAGAATTACAAGNTCAATANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCNNNTNAACAAAGTCCACAAAATTAT-AT-TGTTTTTTTCAATTGTTTGATTAACAACATNTCTGTTTATGTAATGCACATTTGT---GT-ATCTACCTG-GTGGACTCCGGCACGTGCAAATCATGCAAAACAGG--A---TTTTTACAGCTGGGTNATTAT-CATTTGTGTTTAAATAAACAAGTTTTCATAATTCAAACAGACTGACGCA--ATACCGACA-TTTTT-TATTA---ACAT-CTAAGTTATAAATGTAGAAA-TT-AAAA-AAGTT---ATTGCACTTTAAACAGAGTAAAGTTTCTTTTTTTGCTCAGT
Reference ( family-1777 ) : TATACTCAGCAA--AAAAAGAAACTT--TACTCTCCATGAA------TTGGTTATT-TTCAAAATCCTGTTCGAAACACTGC-AC----TGATATTGGTATGGCTGTGTCAGT-------TGATCATTTTNT-AACAAATCTGTATTTTCATTGGACATTTGAAGTGTAG----TTTTGTA----CCCATAAATTAA---TGATAAAGTGGACAAGGGGCGTAATCAAAAATAACGTT--TTTTAACTGAAACTGAAATTTGC--ATTGTTATTGTTGCTTTTCAA-GT--TTG-TTTTT-AAGACTAATATTAGTGAGGCATAGTTGTGAAACAAGCAATTAAGTAAGAATTACAAGNTCAATANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCNNNTNAACAAAGTCCACAAAATTAT-AT-TGTTTTTTTCAATTGTTTGATTAACAACATNTCTGTTTATGTAATGCACATTTGT---GT-ATCTACCTG-GTGGACTCCGGCACGTGCAAATCATGCAAAACAGG--A---TTTTTACAGCTGGGTNATTAT-CATTTGTGTTTAAATAAACAAGTTTTCATAATTCAAACAGACTGACGCA--ATACCGACA-TTTTT-TATTA---ACAT-CTAAGTTATAAATGTAGAAA-TT-AAAA-AAGTT---ATTGCACTTTAAACAGAGTAAAGTTTCTTTTTTTGCTCAGT
gi|1 : TATACTCAGCAA--AAAAAGAAACTT--TACTCTCCATGAA------TTGGTTATT-TTCAAAATCCTGTTTGAAACACTGC-AC----TGATATTGGTATGGCTGTGTCAGT-------TGATCATTTTTT-AACAAATCTGTATTTTCATTGGACATTTGAAGTGTAG----TTTTGTA----TCCATAAATAAA---TGATAAAGTGGACAAGGGGTGTAATCAAAAATAACGTT--TTTTAACTGAAACTGAAATTTGC--ATTGTTATTGTTGCTTTTCAA-TT--GTG-TTTTT-AAGACTAATATTAGTGAGGCATAGTTGTGAAAGAAGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTCCACAAAATTAT-AT-TGTTTTTTTCAATTGGTTGATTAACAACATATCTGTTTAAGTAATGCACATTTGT---GT-ATCTACCTG-GTTGACTCTGACATGTGCAAATCATGCAAAACAGC--A---TTTTTACAGCTAGGTTATTAT-CATTTGTGTTTAAATAAACAAGTTTTCATAATTCAAACAGACTGACACA--ATACCGACT-TTTTT-TATTA---ACAT-CTTA-TTATAAATGTTGAAA-TT-AAAA-AAGTT---ATTGCACTTTAAACAGAGTAAAGTTTCTTTTTTTGCTCAGT
gi|10 : TAATCAGCAA--AAAAAGACACTT--TACTCTCCATAAA------TTGGTTATT-TTCAAAATCCTGTTTGAAACACTGC-AC----TGACATTGGTATGGATGTGTCAAT-------TTATCATTTTTT-AACAAATCTGTATTTTCATTTGACATTTGAAGTGTAG----TTTTGTA----CCCATAACTTAA---TGATAAAGTGGACAAGGGGCGTAAACAAAAATAATGTT--TTTTAACTGAAACTGAAATTTGC--ATTATTATTGTTGCTTTT--------------------AACTAATTTTAGTGAGGCATAGTTGTGAGACAAGCAAGTAAGTAAG----ACAAAGTCAAT
gi|10 : ACATTTCTGTTTATGTAATGCACATTTGT---GT-ATCTACCTG-GTGGACTCCGGCACGTACAAATCATGCAAAACAGG--A---TTTTTACAGCTGGGTTATTAT-CATTTGTGTTTAAATGAATAATTTTTCATAATTCAAACAGACTGACGCA--GGACCGACC-TTTTT-TATTA---ACAT-CTAAGTTATAAAGGTAGAAATTT-AAAA-AAGTT---ACTGCACTTTAAACTGAG---------TTTTTTAGCTCAGTcttccttgaggcgctcttacatttctgtttatgtaatgcacatttgtgtatctacctggtggactccggcacgtacaaatcatgcaaaacaggatttttacagctgggttattatcatttgtgtttaaatgaataatttttcataattcaaacagactgacgcaggaccgaccttttttattaacatctaagttataaaggtagaaatttaaaaaagttactgcactttaaactgagttttttagctcagta
gi|11 : taatcagcaaaaaaagacactttactctccataaattggttattttcaaaatcctgtttgaaacactgcactgacattggtatggatgtgtcaatttatcattttttaacaaatctgtattttcatttgacatttgaagtgtagttttgtacccataacttaatgataaagtggacaaggggcgtaaacaaaaataatgttttttaactgaaactgaaatttgcattattattgttgcttttaactaattttagtgaggcatagttgtgagacaagcaagtaagtaagacaaagtcaatcttccttgaggcgctcttTATACTCAGCAA--AAAAAGAAACTT--TACTCTCCATGAA------TTGGTTATT-TTCAAAATCCTGTTTGAAACACTGC-AC----TGATATTGGTATGGCTGTGTCAGT-------TGATCATTTCTT-AACAAATCTGTATTTTCATTGGACATTTGAAGTGTAG----TTTTGTA----CCCATAAATTAA---TGATAAAATGGACAAGGGGTGTAATCAAAAATAACGTT--TTTTAACTGAAACTGAAATTTGC--ATTGTTATTGTTGCCTTTCAA-GT--TTG-TTTTT-AAGACTAATATTAGTGAGGCATAGTTGTGAAAGAAGCAATTAAGTAAAAATTACAAGTTTAATANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTCCACAAAATTAT-AT-TG-TTTTTTCAATTGTTTGATTAACAACATATCTGTTTATGTAATGCACATTTGT---GT-ATCTACCTG-GTAGACTCTGGCATGTGCAAATCATGCAAAACAGG--A---TTTTTACAGCTa
gi|12 : AAGCTTACTACGC-CCACGTA--------GGTTATTATTCAAGAATTTGTTCGAAACAGTGC-AG----TGACTTTGGCACGGACATGTCATA-------TGTTCATTTTTT-AACAAATCTGTATTTTCATTAAA----TAGAGAGTAG----TTTGGTA----CCCGTAAATAAA---CGAT--ACTTAAC--GTGGCATAATCAAATATAACGTT--TTTAAGTTGAAAATGAAATTTGCCAACTGTTATTGTTGTTGCTCAA-GG--TTG-TTTTT-AAGACTTAAATTAGTGAGGCATCGCTGTTCAACAAa
gi|12 : TCAACAAAGTTAC-CT-TGTGTTTT-CAATTGTTTGGTTAATAATATGTTTGTTTATGTTATGCAAATGTGTCACGTTATCTACCCG-GTGGACTATGGCACGTGCAAATCGTGCAAAACAGG--G---TTTTTACAGCTGGATGATTAT-CGTTTGTGTGTATTTAAACAAG--TTCACAAGCCAAACAGACTTACGTAAGATACCGACA-GTTTTATACAT---ACAT-CTAAGTTGTACATGTAGAagttaccttgtgttttcaattgtttggttaataatatgtttgtttatgttatgcaaatgtgtcacgttatctacccggtggactatggcacgtgcaaatcgtgcaaaacagggtttttacagctggatgattatcgtttgtgtgtatttaaacaagttcacaagccaaacagacttacgtaagataccgacagttttatacatacatctaagttgtacatgtagatgt
gi|13 : aagcttactacgcccacgtaggttattattcaagaatttgttcgaaacagtgcagtgactttggcacggacatgtcatatgttcattttttaacaaatctgtattttcattaaatagagagtagtttggtacccgtaaataaacgatacttaacgtggcataatcaaatataacgtttttaagttgaaaatgaaatttgccaactgttattgttgttgctcaaggttgtttttaagacttaaattagtgaggcatcgctgtTATACTCAGCAA--AAATAGAAACTT--TACTCTCCATGAA------TTGGTTATT-TTCAAAATCCTGTTTGAAACACTGC-AC----TGATATTGGTATGGCTGTGTCAGT-------TGATCGTTTTTT-AACAAATCTGTATTTTCATTGGACATTTGAAGCGTAG----TTTTGTA----CCCATAAATTAA---TGATAAAGTGGACAAGGGGTGTAATCAAAAATAACG-T--TTTTAACTGAAACTGAAATTTGC--ATTGTTATTGTTGCTTTTCAA-GT--TTG-TTTTT-AAGACTAATATTAGTGAGGCATAGTTGTGAAAtgt
gi|14 : ATACTGAGTAA--AAAT-GATACTT--TGCTCTCCATCAAAAATTATTAGTTATT-TTCAAAATTACGTTTGAATCATTGC-AA----TGATAGTGATATGGTTGTATCAGT-------TTATCATTTTAT-AACAAAACTGTATGTTCATTAAACATTTTAAGTGTAG----TTTTATACCGGCCCGTAAGTTAA---CGATAAAGTAGATAAGAGACATAAT-AAAATTAATGTTTGTTTTAATCAAAACTGAAATTTGC--ATTTCTATTGTTGCT
gi|15 : AA--AAAAAGAAACTT--TACTCTTCATAAA------TTGG----T-TTAAAAATCGGGTTCGGAACACTGCGACATTGTGATAGTGGTATAGTTGTGTCGGT-------TGATCAGTTTTTAAACACATCTGTATTTTAATTGAACACTTGTA----AC----CTTTG-------------ATTAA---CGAAACAGAGGACAAGGGGAATAATGATAAATAACGTgctaa
gi|16 : tgtatgctcggcaaaaaaaaaTGT---TT-ATCTGCCTG-GTGGACTCTGGTACGTGCAAACCTTGCAAAACAAGTTT---TTTTTACAGCTGCAAGATTGT-CATTTGTGTTTAAATAGACACATTTCCA-----CAAATAGACTGATAAA--ATACCGACA-ATTTG-TATAAAT-ACAT-CTAAGTTATACATGTAGAA-----AAAA-AAGTT---ATTGCACTT------GAGTAAAGTTTCTTTTTTTGCTCAgt
gi|17 : TTTACAGCTCAATGACCGTTCATTTGTGTTTAAATAAACTAGTTTCCACTAGCCATAAAGACTGGCTCA--ATAATGACA---TTT-TAATACATACAT-CTAAGTTATACATGAAGAAA-TA-AAAATAAATTC--ATT
gi|18 : CTGAAACTTAAGTTTGC--ATTGTTACTATTGCTTCTCAATGTTGTTG-TTTTTAAAAACTAtttgct
gi|18 : CAAAATTACGATATGTTTTT---GATTATCTGGTTCACAACGTGTTTCTTTGTATAATACtaattgctaagcaaaattacgatatgtttttgattatctggttcacaacgtgtttctttgtataatac
gi|2 : ctgaaacttaagtttgcattgttactattgcttctcaatgttgttgtttttaaaaactataattgctaagATACTCAGCAA--AAAAAGAAACTT--TACTCTCCATGAA------TTGGTTATT-TTCAAAATCCTGTTAGAAACACTGC-AC----TGATATTGGTATGGCTGTGTCAGT-------TTATAATTTTTT-AACAAATCTGTATTTTCATTGGACATTTGAAGTGTAG----TTTTGTA----CCCATAAATTAA---TGATAAAGTGGACAAGGGGTGTAATAAAAAATAACGTT--TTTTAACTGAAACTGAAATTTGC--ATTGTTATTGTTGCTTTT-AA-GT--TTG-TTTTT-AAGACTAATATTAGTGAGGCATAGTTGTGAAAGAAGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTCCACAGAATTAT-AT-TG-TTTTTTCAATTGTTTGATTAACAACATATCTGTTTATGTTATGCACATTTGT---GT-ATCTACCTG-GTGGACTCCGGCATGTGCAAATTATGCAAAACAGG--A---TTTTTACAGCTAGGTTATTAT-CATTTGTGTTTAAATAAACAAGTTTTCATAATTCAAACAGACTGACACA--ATACCGACA-TTTTT-TATTA---ACAT-CTTA-TTATAAATGTTGAAA-TT-AAAT-AAGTT---ATTGAACTTTAAACAGAGTAAAGTTTCTTTTTTTGCTCAGT
gi|3 : ACTCAGCAA--AAAAAGAAACTT--TACTCTCCATGAA------TTGGTTATT-TTCAAATTCCTGTTTGACACACTGC-AC----TGATATTTGTACGACTGTGTCAAT-------TGATCATTTTGT-AACAAATCTGTATTTTCATTGGACATTTGAAGTGT-G----TTTTGTA----CCCATAAATTAA---TGATAAAGTGGACAAGGGGCGTAATCAAAAATAACGTT--TTTTAATTGAAACTGAAATTTGC--ATTGTTATTGTTGCTTTTCAA-GT--TTG-TTTTT-AAGACTAATATTAGTGAGGCATAGTTGTGAAACAAGC-NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTCCACAAAATTAT-GT-TGTTTTTTTCAATTGTTTGATTAACAACATTTCTGTTGATGTAATGTACATTTGT---GT-ATCTACCAT-GTGGACTCTGGCATATGCAAATCATTTAAAACAGG--A---TTTTTACAGCTGGGTTATTA-----TTGTGTTTAAATAAGCAAGTTTTCAAAATTCAAACAGACTGACTCA--ATATCCACATTTTTT-TAATA---ACAT-CTAAGTTATAAATGTAGAAA-TT-AAAA-AAGTT---ATTGCACTTTAAACAGAGTAAAGTTTCTTTTTTTGCTCAGTa
gi|4 : TATACTCAGCAA--AAAACAAA--TT--TACTCTCCATGAA------TTGGTTATT-TTCAAAATCCTATTTGACACACTGC-AC----TGATATTAGTATGGCTGTGTCAGG-------TGATCATTTTGT-ACCAAATCTGTATTTTTATTTGACATTTGAAGTGTAG----TTTTGTA----ACCATTAATTAA---TGATAAAGTGGACAAGAGGCGTAATAAAAAATAACGTT--TTTTAACTAAAACTGAAATTTGC--ATTGTTATTATTGCTTTTCAA-GT--TTG-TTTTT-AAGGCTAATATTA-------------GTGAAACAAGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCATTAAAGAATG-ACACAAACTTAT-AT-TGTTTTTTTCAATTGTTTGAATAACAACATTTCTGTTTATGTAATGTACTTTTGT---GT-ATCTACCTG-GTGGATGCCGGCACATGCAAATCATGCAAATCATG--T---TTTTTACAGCTGGATGATTAT-CACTTGTGTTTAAATAAACAAGTTTTCATAATTCAAACAGACTGACGCA--ATACCAACG--TTTT-AATAA---ACAT-CTAAGTTATAATTGTAGAAA-TTAAAAA-AAGTT---ATTGCACTTTAAACAAAGTAAAGTTTCTTTTTTAGCTCAGTat
gi|5 : TATACTCAGCAA--AAAAAGAAACTT--TACTCTCCATGAA------TTGGTTATT-TTCAAAATCCTGTTTAAAACACTAC-AC----TGATATTGGAATGGCTGTGTCAGT-------TGATCATTTTTT-AACAAATCTGTATTTTCATTGGACATTTGAAGTGTAG----TTTTGTA----CCCATAAATTAA---TGATAAAGTGGATAAGGGGTGTAATCAAAAACAACCTT--TTTTTACTGAAACTGAAATTTGC--ATTGTTATTGTTGCTTT-CAA-GT--TTG-TTTTT-AAGACTAATATTAGTGAGGCATAGTTGTGAAAGAAGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTCCACAAAATTAT-AT-TGTTTTTT-CAACTGTTTGATTAACAACATATCTGTTTATGTAATGCACATTTGT---GT-AT----CTA-AT--AC-CTGGTA-----------------ACAGG--A---TTTTTACAGCTAGGTTATTAT-CATTTGTGTTTAAATAAACAAGTTTTCATAATTCAAACAGACTGACACA--ATACCGACA-TTTTT-TATTA---ACAT-CTTA-TTATAAATGTTGAAA-TT-AAAA-AAGTT---ATTGAACTTTAAACAGAGTGAAGTTTCTTTTTTTGCTCAGTa
gi|6 : ACTCAGCAA--AAAAAGAA---T--T--TTTCCATGAA------TTGGTTATT-TTCAAATTCCTGTTTGAAACACTGC-AC----TGATATTTGTATGGCCGTGTCAGT-------TGATCATTTTGT-ATTAAATCTGTATTTTGATTGGACATTTGAAATGT-G----TTTTGTA----CCCATAAATTAA---TGATAAAGTGGACAAGGCGTATAACCAAAAATAAC----------------------ATTTGC--ACTGTTACTGTTGCTTTTCAA-AT--TTG-TTTTT-AAGACTAATATTAGTGAGGCATAGTTGTGAGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCGTATTA-CAAAGTCCACGAAATCAT-GT--ATTTTTTTCAATTGTTTGAATAACAACATTTTTGTTGATGTAATGCACATTTGA---GT-ATTTA-CTGCGTGGACTCCAGCACATGCAAATTATGCAAAACAGG--A---TTTTTACAGCTGGGTTATTAT-CACTTGTGTTCAA------AAGTTTTCATAATTCAAACAGACTGACTCA--ATACAGACATTTTTT-TAATA---ACAT-CTAAGTTATAAATGTAGAAA-TT-GTAA-AAGTT---ATTGCACTTTAAACAGAGTAAAGTTTC-TTTTTTGCTCAGTata
gi|7 : AA------TTGGTTATT-TTCAAAATCCTGTTCGAAACACTGC-AC----TGATATTGGTATGGCTGTGTCAGT-------TGATCATTTTAT-AACAAATCTGTATTTTCATTGGACATTTGAAGTGTAG----TTTTGTA----CCCATAAATTAA---TGATAAAGTGGACAAGGGGTGTAATCAAAAATAACGTT--TTTTAACTGAAACTGAAATTTGC--ATTGTTATTGTTGC-TTTCAA-GT--TTG-TTTTT-AAGACTTATATTAGTGAGGCATAGTTGTGAAAGAAGCAATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATTAT-AT-TG-TTTTTTCAATTGTTTGATTAACAACATATCTGTTTATGTAATGCACATTTGT---GT-ATCTACCTG-GTGGACTCCGGCATGTGCAAATCATGCAAAACAGG--A---TGTTTAAAGCTATGTTATTAT-CATTTGTGGTTAAATAAACAAGTTTTCATAATTCAAACAGACTGACACA--ATACCGACA-TTTTT-TATTA---ACAT-CTCA-TTATAAATGTTGAAA-TT-AAAA-AAGTT---ATTGAACTTTAAACAGAGTAAAGTTTCTTTTTTT-CTCAat
gi|8 : TTCATGAA------TTGATTATT-TTCAAAATCCTGTTCGACACACTAC-AC----TGATATTGGTATGGCTTCGTCATT-------TGATCATTTTGT-AACAAATCTGTATTTTCATTGGACATTGGAAGTGTGG----TTTTGTA----CCCATAAATTAA---TGATGTAGTGGACAAGAGGCATAATAAAAAATAACGTC--TTTTAACTGAAACTGAAATTTGC--ATTGTTATTGTTGCTTTTCAA-GT--TCG-TTTTA-AAGACCAGTATTAGTGAGGCATAGTTGTGAAACAAGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACAAAGTACACAAAATTAT-GT-TA-TTTTTTCAATTGT----TTAACAACATTTCTGTTTATGTAATGTACATTTGT---GT-ATCTACCTG-GTGAACTCCGGCACGTGCAAATCATGT--------------TTTTTACAGCTGGATGATTAT-CACTTGTGTTTAAATAAACATGTTTTCATCATTCAAACAGACTGTCGCA--ATACCAACA--TTTT-TATAA---ACAT-CTAAGATATTACTATAGAAA-TT-AAAA-AAGTT---ATTGCACTTTAAACAGAGAAAAGTTTCTTTTTTTGCTCAGT
gi|9 : TATACTCGGCAACAAAAAAGAAACTT--TACTCCCCATCAA------TTGGTTGTT-TTCAAATTTCTGTACGAAAGACTTC-AA----TGATATTAGTATGGATGAGTCAGTTACTTAGTAATCATTTTGA-AACATATCTGTATTTTCGTTCAATATTTAAAGAGAAGCTTTTTTTTTA----CCTTT---TTAACCTTAATAAATTAGACAAGGGACATAA-CAAAAATAACGTT--TTTTAACTGAAACCAAAAGTTGT--ATTGTTATTGTTGCTTCTCAA-GT--TTGCTTTTT-AAGATTTAAAATAACGAGGCACTGCTGTGAAACAAa
gi|9 : TGTTTGATTAATACCATGCCTGTTTATGTAATGCTTGTTTGT---GT-ATCTACCTG-TTAGACTCTGGCACGGACAAATCAC-C--AACAGA--GTTTTTTTTATGGCTGGATGAGTAT-CCCTCGTGCTTAAATAAATAAGTTTCAACTAGCCAAACCGACTGACGCA--ATACCGATA-TTTTA-TACAT---ACATCCTTATTTCTACATAAAGAAA-TC-AAAA-AAGTTATAATCGCATTTTAAAAAGAGTAAAGTGTATTTTaataatgatgtgtttgattaataccatgcctgtttatgtaatgcttgtttgtgtatctacctgttagactctggcacggacaaatcaccaacagagttttttttatggctggatgagtatccctcgtgcttaaataaataagtttcaactagccaaaccgactgacgcaataccgatattttatacatacatccttatttctacataaagaaatcaaaaaagttataatcgcattttaaaaagagtaaagtgtattttatgctgtcata
blockSeqs : CA AC AAATTA A T G ATTG TACTTAG T A CTTT CCGG CCT TG CA T TG C A C A AAATTACAAGTTTAATANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN G A T T T CAC T C GTTT T T G AG TT A T CAT C G T A T ATA
blockSeqs : . . . . T . . . T . . . . . . . . . . G A NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN . . T T A . . . TTT G . G . TT . A AT . G . . . C
blockSeqs : . . . . C . . . T . . . . . . . . . . C N NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN . . T T G . . . A G . A . T . A . . G . . . .
blockSeqs : . . . . T . . . T . . . . . . . . . . G N NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCATTAAAG . . T T G . . . A G . T . G . T . . G . . . .
blockSeqs : . . . . T . . . A . . . . . . . . . . C N NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN . . T T A . . . G T . A . A . T . . G . . . .
blockSeqs : . . . . C . . . T . . . . . . . . . . C N NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN . . T T T . . . A T . T . T . T . . G . . . .
blockSeqs : . . . . A . . . T . . . . . . . . . . G A NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAC . . . T T . . . A G . G . T . A . . G . . . .
blockSeqs : . . . . T . . . G . . . . . . . . . . N N NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCGTATTAC . . . . A . . . T T . A . T . T . . G . . . .
blockSeqs : . . . . T . . . G . . . . . . . . . . G . . . . . T . . . A T . T . T . T . . T . . . .
blockSeqs : . . . . T . . . T . . . . . . . . . . C . . . . A . . . A T . A . . . T . . . . . . .
blockSeqs : . . . . T . . . G . . . . . . . . . . C T . . . A G . G . . . A . . . . . . .
blockSeqs : . . . C . . . A . . . . . . . . . . G . . . . G . G . . . A . . .
blockSeqs : . . C . . . G . . . . . . . . . .
blockSeqs : . . C . . . G . . . . .
blockSeqCons :
originalCons : TATACTCAGCAA--AAAAAGAAACTT--TACTCTCCATGAA------TTGGTTATT-TTCAAAATCCTGTTCGAAACACTGC-AC----TGATATTGGTATGGCTGTGTCAGT-------TGATCATTTTNT-AACAAATCTGTATTTTCATTGGACATTTGAAGTGTAG----TTTTGTA----CCCATAAATTAA---TGATAAAGTGGACAAGGGGCGTAATCAAAAATAACGTT--TTTTAACTGAAACTGAAATTTGC--ATTGTTATTGTTGCTTTTCAA-GT--TTG-TTTTT-AAGACTAATATTAGTGAGGCATAGTTGTGAAACAAGCAATTAAGTAAGAATTACAAGNTCAATANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCNNNTNAACAAAGTCCACAAAATTAT-AT-TGTTTTTTTCAATTGTTTGATTAACAACATNTCTGTTTATGTAATGCACATTTGT---GT-ATCTACCTG-GTGGACTCCGGCACGTGCAAATCATGCAAAACAGG--A---TTTTTACAGCTGGGTNATTAT-CATTTGTGTTTAAATAAACAAGTTTTCATAATTCAAACAGACTGACGCA--ATACCGACA-TTTTT-TATTA---ACAT-CTAAGTTATAAATGTAGAAA-TT-AAAA-AAGTT---ATTGCACTTTAAACAGAGTAAAGTTTCTTTTTTTGCTCAGT
finalCons : TATACTCAGCAA--AAAAAGAAACTT--TACTCTCCATGAA------TTGGTTATT-TTCAAAATCCTGTTCGAAACACTGC-AC----TGATATTGGTATGGCTGTGTCAGT-------TGATCATTTTNT-AACAAATCTGTATTTTCATTGGACATTTGAAGTGTAG----TTTTGTA----CCCATAAATTAA---TGATAAAGTGGACAAGGGGCGTAATCAAAAATAACGTT--TTTTAACTGAAACTGAAATTTGC--ATTGTTATTGTTGCTTTTCAA-GT--TTG-TTTTT-AAGACTAATATTAGTGAGGCATAGTTGTGAAACAAGCAATTAAGTAAGAATTACAAGNTCAATANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCNNNTNAACAAAGTCCACAAAATTAT-AT-TGTTTTTTTCAATTGTTTGATTAACAACATNTCTGTTTATGTAATGCACATTTGT---GT-ATCTACCTG-GTGGACTCCGGCACGTGCAAATCATGCAAAACAGG--A---TTTTTACAGCTGGGTNATTAT-CATTTGTGTTTAAATAAACAAGTTTTCATAATTCAAACAGACTGACGCA--ATACCGACA-TTTTT-TATTA---ACAT-CTAAGTTATAAATGTAGAAA-TT-AAAA-AAGTT---ATTGCACTTTAAACAGAGTAAAGTTTCTTTTTTTGCTCAGT
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|19 ): ATAACGCATTCGCTTTATACCAACATTTTTACACATACATCTAAATCAAACGTGTAGAAAAAAAA
Alignments
lowQualScore : 777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777 11
lowQualScore : 44 44 777777 2 1 2 5555 8888888 1 2 5555 5555 444 33 33 2 33 2 2 1 1 0 222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222 0 3 3 8 2 1 555 3 3 0 888888 1 3 0 1 44 22 3 1 999 3 0 7 3 3 3 999
lowQualScore : .. .. ...... . . . .... ....... . . .... .... ... .. .. . .. . . . . . ............................................................................................. . . . . . . ... . . . ...... . . . . .. .. . . ... . . . . . . ...
lowQualScore : 66 22 777777 7 3 7 7777 7777777 0 7 7777 7777 777 99 77 9 99 9 9 3 9 4 333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333 6 6 6 8 1 0 444 1 1 4 888888 0 1 2 9 22 33 1 0 666 1 8 3 3 3 3 222
consensus : TATACTCAGCAA--AAAAAGAAACTT--TACTCTCCATGAA------TTGGTTATT-TTCAAAATCCTGTTCGAAACACTGC-AC----TGATATTGGTATGGCTGTGTCAGT-------TGATCATTTTNT-AACAAATCTGTATTTTCATTGGACATTTGAAGTGTAG----TTTTGTA----CCCATAAATTAA---TGATAAAGTGGACAAGGGGCGTAATCAAAAATAACGTT--TTTTAACTGAAACTGAAATTTGC--ATTGTTATTGTTGCTTTTCAA-GT--TTG-TTTTT-AAGACTAATATTAGTGAGGCATAGTTGTGAAACAAGCAATTAAGTAAGAATTACAAGNTCAATANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCNNNTNAACAAAGTCCACAAAATTAT-AT-TGTTTTTTTCAATTGTTTGATTAACAACATNTCTGTTTATGTAATGCACATTTGT---GT-ATCTACCTG-GTGGACTCCGGCACGTGCAAATCATGCAAAACAGG--A---TTTTTACAGCTGGGTNATTAT-CATTTGTGTTTAAATAAACAAGTTTTCATAATTCAAACAGACTGACGCA--ATACCGACA-TTTTT-TATTA---ACAT-CTAAGTTATAAATGTAGAAA-TT-AAAA-AAGTT---ATTGCACTTTAAACAGAGTAAAGTTTCTTTTTTTGCTCAGT
Reference ( family-1777 ) : TATACTCAGCAA--AAAAAGAAACTT--TACTCTCCATGAA------TTGGTTATT-TTCAAAATCCTGTTCGAAACACTGC-AC----TGATATTGGTATGGCTGTGTCAGT-------TGATCATTTTNT-AACAAATCTGTATTTTCATTGGACATTTGAAGTGTAG----TTTTGTA----CCCATAAATTAA---TGATAAAGTGGACAAGGGGCGTAATCAAAAATAACGTT--TTTTAACTGAAACTGAAATTTGC--ATTGTTATTGTTGCTTTTCAA-GT--TTG-TTTTT-AAGACTAATATTAGTGAGGCATAGTTGTGAAACAAGCAATTAAGTAAGAATTACAAGNTCAATANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCNNNTNAACAAAGTCCACAAAATTAT-AT-TGTTTTTTTCAATTGTTTGATTAACAACATNTCTGTTTATGTAATGCACATTTGT---GT-ATCTACCTG-GTGGACTCCGGCACGTGCAAATCATGCAAAACAGG--A---TTTTTACAGCTGGGTNATTAT-CATTTGTGTTTAAATAAACAAGTTTTCATAATTCAAACAGACTGACGCA--ATACCGACA-TTTTT-TATTA---ACAT-CTAAGTTATAAATGTAGAAA-TT-AAAA-AAGTT---ATTGCACTTTAAACAGAGTAAAGTTTCTTTTTTTGCTCAGT
gi|1 : TATACTCAGCAA--AAAAAGAAACTT--TACTCTCCATGAA------TTGGTTATT-TTCAAAATCCTGTTTGAAACACTGC-AC----TGATATTGGTATGGCTGTGTCAGT-------TGATCATTTTTT-AACAAATCTGTATTTTCATTGGACATTTGAAGTGTAG----TTTTGTA----TCCATAAATAAA---TGATAAAGTGGACAAGGGGTGTAATCAAAAATAACGTT--TTTTAACTGAAACTGAAATTTGC--ATTGTTATTGTTGCTTTTCAA-TT--GTG-TTTTT-AAGACTAATATTAGTGAGGCATAGTTGTGAAAGAAGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTCCACAAAATTAT-AT-TGTTTTTTTCAATTGGTTGATTAACAACATATCTGTTTAAGTAATGCACATTTGT---GT-ATCTACCTG-GTTGACTCTGACATGTGCAAATCATGCAAAACAGC--A---TTTTTACAGCTAGGTTATTAT-CATTTGTGTTTAAATAAACAAGTTTTCATAATTCAAACAGACTGACACA--ATACCGACT-TTTTT-TATTA---ACAT-CTTA-TTATAAATGTTGAAA-TT-AAAA-AAGTT---ATTGCACTTTAAACAGAGTAAAGTTTCTTTTTTTGCTCAGT
gi|10 : TAATCAGCAA--AAAAAGACACTT--TACTCTCCATAAA------TTGGTTATT-TTCAAAATCCTGTTTGAAACACTGC-AC----TGACATTGGTATGGATGTGTCAAT-------TTATCATTTTTT-AACAAATCTGTATTTTCATTTGACATTTGAAGTGTAG----TTTTGTA----CCCATAACTTAA---TGATAAAGTGGACAAGGGGCGTAAACAAAAATAATGTT--TTTTAACTGAAACTGAAATTTGC--ATTATTATTGTTGCTTTT--------------------AACTAATTTTAGTGAGGCATAGTTGTGAGACAAGCAAGTAAGTAAG----ACAAAGTCAAT
gi|10 : ACATTTCTGTTTATGTAATGCACATTTGT---GT-ATCTACCTG-GTGGACTCCGGCACGTACAAATCATGCAAAACAGG--A---TTTTTACAGCTGGGTTATTAT-CATTTGTGTTTAAATGAATAATTTTTCATAATTCAAACAGACTGACGCA--GGACCGACC-TTTTT-TATTA---ACAT-CTAAGTTATAAAGGTAGAAATTT-AAAA-AAGTT---ACTGCACTTTAAACTGAG---------TTTTTTAGCTCAGTcttccttgaggcgctcttacatttctgtttatgtaatgcacatttgtgtatctacctggtggactccggcacgtacaaatcatgcaaaacaggatttttacagctgggttattatcatttgtgtttaaatgaataatttttcataattcaaacagactgacgcaggaccgaccttttttattaacatctaagttataaaggtagaaatttaaaaaagttactgcactttaaactgagttttttagctcagta
gi|11 : taatcagcaaaaaaagacactttactctccataaattggttattttcaaaatcctgtttgaaacactgcactgacattggtatggatgtgtcaatttatcattttttaacaaatctgtattttcatttgacatttgaagtgtagttttgtacccataacttaatgataaagtggacaaggggcgtaaacaaaaataatgttttttaactgaaactgaaatttgcattattattgttgcttttaactaattttagtgaggcatagttgtgagacaagcaagtaagtaagacaaagtcaatcttccttgaggcgctcttTATACTCAGCAA--AAAAAGAAACTT--TACTCTCCATGAA------TTGGTTATT-TTCAAAATCCTGTTTGAAACACTGC-AC----TGATATTGGTATGGCTGTGTCAGT-------TGATCATTTCTT-AACAAATCTGTATTTTCATTGGACATTTGAAGTGTAG----TTTTGTA----CCCATAAATTAA---TGATAAAATGGACAAGGGGTGTAATCAAAAATAACGTT--TTTTAACTGAAACTGAAATTTGC--ATTGTTATTGTTGCCTTTCAA-GT--TTG-TTTTT-AAGACTAATATTAGTGAGGCATAGTTGTGAAAGAAGCAATTAAGTAAAAATTACAAGTTTAATANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTCCACAAAATTAT-AT-TG-TTTTTTCAATTGTTTGATTAACAACATATCTGTTTATGTAATGCACATTTGT---GT-ATCTACCTG-GTAGACTCTGGCATGTGCAAATCATGCAAAACAGG--A---TTTTTACAGCTa
gi|12 : AAGCTTACTACGC-CCACGTA--------GGTTATTATTCAAGAATTTGTTCGAAACAGTGC-AG----TGACTTTGGCACGGACATGTCATA-------TGTTCATTTTTT-AACAAATCTGTATTTTCATTAAA----TAGAGAGTAG----TTTGGTA----CCCGTAAATAAA---CGAT--ACTTAAC--GTGGCATAATCAAATATAACGTT--TTTAAGTTGAAAATGAAATTTGCCAACTGTTATTGTTGTTGCTCAA-GG--TTG-TTTTT-AAGACTTAAATTAGTGAGGCATCGCTGTTCAACAAa
gi|12 : TCAACAAAGTTAC-CT-TGTGTTTT-CAATTGTTTGGTTAATAATATGTTTGTTTATGTTATGCAAATGTGTCACGTTATCTACCCG-GTGGACTATGGCACGTGCAAATCGTGCAAAACAGG--G---TTTTTACAGCTGGATGATTAT-CGTTTGTGTGTATTTAAACAAG--TTCACAAGCCAAACAGACTTACGTAAGATACCGACA-GTTTTATACAT---ACAT-CTAAGTTGTACATGTAGAagttaccttgtgttttcaattgtttggttaataatatgtttgtttatgttatgcaaatgtgtcacgttatctacccggtggactatggcacgtgcaaatcgtgcaaaacagggtttttacagctggatgattatcgtttgtgtgtatttaaacaagttcacaagccaaacagacttacgtaagataccgacagttttatacatacatctaagttgtacatgtagatgt
gi|13 : aagcttactacgcccacgtaggttattattcaagaatttgttcgaaacagtgcagtgactttggcacggacatgtcatatgttcattttttaacaaatctgtattttcattaaatagagagtagtttggtacccgtaaataaacgatacttaacgtggcataatcaaatataacgtttttaagttgaaaatgaaatttgccaactgttattgttgttgctcaaggttgtttttaagacttaaattagtgaggcatcgctgtTATACTCAGCAA--AAATAGAAACTT--TACTCTCCATGAA------TTGGTTATT-TTCAAAATCCTGTTTGAAACACTGC-AC----TGATATTGGTATGGCTGTGTCAGT-------TGATCGTTTTTT-AACAAATCTGTATTTTCATTGGACATTTGAAGCGTAG----TTTTGTA----CCCATAAATTAA---TGATAAAGTGGACAAGGGGTGTAATCAAAAATAACG-T--TTTTAACTGAAACTGAAATTTGC--ATTGTTATTGTTGCTTTTCAA-GT--TTG-TTTTT-AAGACTAATATTAGTGAGGCATAGTTGTGAAAtgt
gi|14 : ATACTGAGTAA--AAAT-GATACTT--TGCTCTCCATCAAAAATTATTAGTTATT-TTCAAAATTACGTTTGAATCATTGC-AA----TGATAGTGATATGGTTGTATCAGT-------TTATCATTTTAT-AACAAAACTGTATGTTCATTAAACATTTTAAGTGTAG----TTTTATACCGGCCCGTAAGTTAA---CGATAAAGTAGATAAGAGACATAAT-AAAATTAATGTTTGTTTTAATCAAAACTGAAATTTGC--ATTTCTATTGTTGCT
gi|15 : AA--AAAAAGAAACTT--TACTCTTCATAAA------TTGG----T-TTAAAAATCGGGTTCGGAACACTGCGACATTGTGATAGTGGTATAGTTGTGTCGGT-------TGATCAGTTTTTAAACACATCTGTATTTTAATTGAACACTTGTA----AC----CTTTG-------------ATTAA---CGAAACAGAGGACAAGGGGAATAATGATAAATAACGTgctaa
gi|16 : tgtatgctcggcaaaaaaaaaTGT---TT-ATCTGCCTG-GTGGACTCTGGTACGTGCAAACCTTGCAAAACAAGTTT---TTTTTACAGCTGCAAGATTGT-CATTTGTGTTTAAATAGACACATTTCCA-----CAAATAGACTGATAAA--ATACCGACA-ATTTG-TATAAAT-ACAT-CTAAGTTATACATGTAGAA-----AAAA-AAGTT---ATTGCACTT------GAGTAAAGTTTCTTTTTTTGCTCAgt
gi|17 : TTTACAGCTCAATGACCGTTCATTTGTGTTTAAATAAACTAGTTTCCACTAGCCATAAAGACTGGCTCA--ATAATGACA---TTT-TAATACATACAT-CTAAGTTATACATGAAGAAA-TA-AAAATAAATTC--ATT
gi|18 : CTGAAACTTAAGTTTGC--ATTGTTACTATTGCTTCTCAATGTTGTTG-TTTTTAAAAACTAtttgct
gi|18 : CAAAATTACGATATGTTTTT---GATTATCTGGTTCACAACGTGTTTCTTTGTATAATACtaattgctaagcaaaattacgatatgtttttgattatctggttcacaacgtgtttctttgtataatac
gi|2 : ctgaaacttaagtttgcattgttactattgcttctcaatgttgttgtttttaaaaactataattgctaagATACTCAGCAA--AAAAAGAAACTT--TACTCTCCATGAA------TTGGTTATT-TTCAAAATCCTGTTAGAAACACTGC-AC----TGATATTGGTATGGCTGTGTCAGT-------TTATAATTTTTT-AACAAATCTGTATTTTCATTGGACATTTGAAGTGTAG----TTTTGTA----CCCATAAATTAA---TGATAAAGTGGACAAGGGGTGTAATAAAAAATAACGTT--TTTTAACTGAAACTGAAATTTGC--ATTGTTATTGTTGCTTTT-AA-GT--TTG-TTTTT-AAGACTAATATTAGTGAGGCATAGTTGTGAAAGAAGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTCCACAGAATTAT-AT-TG-TTTTTTCAATTGTTTGATTAACAACATATCTGTTTATGTTATGCACATTTGT---GT-ATCTACCTG-GTGGACTCCGGCATGTGCAAATTATGCAAAACAGG--A---TTTTTACAGCTAGGTTATTAT-CATTTGTGTTTAAATAAACAAGTTTTCATAATTCAAACAGACTGACACA--ATACCGACA-TTTTT-TATTA---ACAT-CTTA-TTATAAATGTTGAAA-TT-AAAT-AAGTT---ATTGAACTTTAAACAGAGTAAAGTTTCTTTTTTTGCTCAGT
gi|3 : ACTCAGCAA--AAAAAGAAACTT--TACTCTCCATGAA------TTGGTTATT-TTCAAATTCCTGTTTGACACACTGC-AC----TGATATTTGTACGACTGTGTCAAT-------TGATCATTTTGT-AACAAATCTGTATTTTCATTGGACATTTGAAGTGT-G----TTTTGTA----CCCATAAATTAA---TGATAAAGTGGACAAGGGGCGTAATCAAAAATAACGTT--TTTTAATTGAAACTGAAATTTGC--ATTGTTATTGTTGCTTTTCAA-GT--TTG-TTTTT-AAGACTAATATTAGTGAGGCATAGTTGTGAAACAAGC-NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTCCACAAAATTAT-GT-TGTTTTTTTCAATTGTTTGATTAACAACATTTCTGTTGATGTAATGTACATTTGT---GT-ATCTACCAT-GTGGACTCTGGCATATGCAAATCATTTAAAACAGG--A---TTTTTACAGCTGGGTTATTA-----TTGTGTTTAAATAAGCAAGTTTTCAAAATTCAAACAGACTGACTCA--ATATCCACATTTTTT-TAATA---ACAT-CTAAGTTATAAATGTAGAAA-TT-AAAA-AAGTT---ATTGCACTTTAAACAGAGTAAAGTTTCTTTTTTTGCTCAGTa
gi|4 : TATACTCAGCAA--AAAACAAA--TT--TACTCTCCATGAA------TTGGTTATT-TTCAAAATCCTATTTGACACACTGC-AC----TGATATTAGTATGGCTGTGTCAGG-------TGATCATTTTGT-ACCAAATCTGTATTTTTATTTGACATTTGAAGTGTAG----TTTTGTA----ACCATTAATTAA---TGATAAAGTGGACAAGAGGCGTAATAAAAAATAACGTT--TTTTAACTAAAACTGAAATTTGC--ATTGTTATTATTGCTTTTCAA-GT--TTG-TTTTT-AAGGCTAATATTA-------------GTGAAACAAGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCATTAAAGAATG-ACACAAACTTAT-AT-TGTTTTTTTCAATTGTTTGAATAACAACATTTCTGTTTATGTAATGTACTTTTGT---GT-ATCTACCTG-GTGGATGCCGGCACATGCAAATCATGCAAATCATG--T---TTTTTACAGCTGGATGATTAT-CACTTGTGTTTAAATAAACAAGTTTTCATAATTCAAACAGACTGACGCA--ATACCAACG--TTTT-AATAA---ACAT-CTAAGTTATAATTGTAGAAA-TTAAAAA-AAGTT---ATTGCACTTTAAACAAAGTAAAGTTTCTTTTTTAGCTCAGTat
gi|5 : TATACTCAGCAA--AAAAAGAAACTT--TACTCTCCATGAA------TTGGTTATT-TTCAAAATCCTGTTTAAAACACTAC-AC----TGATATTGGAATGGCTGTGTCAGT-------TGATCATTTTTT-AACAAATCTGTATTTTCATTGGACATTTGAAGTGTAG----TTTTGTA----CCCATAAATTAA---TGATAAAGTGGATAAGGGGTGTAATCAAAAACAACCTT--TTTTTACTGAAACTGAAATTTGC--ATTGTTATTGTTGCTTT-CAA-GT--TTG-TTTTT-AAGACTAATATTAGTGAGGCATAGTTGTGAAAGAAGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTCCACAAAATTAT-AT-TGTTTTTT-CAACTGTTTGATTAACAACATATCTGTTTATGTAATGCACATTTGT---GT-AT----CTA-AT--AC-CTGGTA-----------------ACAGG--A---TTTTTACAGCTAGGTTATTAT-CATTTGTGTTTAAATAAACAAGTTTTCATAATTCAAACAGACTGACACA--ATACCGACA-TTTTT-TATTA---ACAT-CTTA-TTATAAATGTTGAAA-TT-AAAA-AAGTT---ATTGAACTTTAAACAGAGTGAAGTTTCTTTTTTTGCTCAGTa
gi|6 : ACTCAGCAA--AAAAAGAA---T--T--TTTCCATGAA------TTGGTTATT-TTCAAATTCCTGTTTGAAACACTGC-AC----TGATATTTGTATGGCCGTGTCAGT-------TGATCATTTTGT-ATTAAATCTGTATTTTGATTGGACATTTGAAATGT-G----TTTTGTA----CCCATAAATTAA---TGATAAAGTGGACAAGGCGTATAACCAAAAATAAC----------------------ATTTGC--ACTGTTACTGTTGCTTTTCAA-AT--TTG-TTTTT-AAGACTAATATTAGTGAGGCATAGTTGTGAGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCGTATTA-CAAAGTCCACGAAATCAT-GT--ATTTTTTTCAATTGTTTGAATAACAACATTTTTGTTGATGTAATGCACATTTGA---GT-ATTTA-CTGCGTGGACTCCAGCACATGCAAATTATGCAAAACAGG--A---TTTTTACAGCTGGGTTATTAT-CACTTGTGTTCAA------AAGTTTTCATAATTCAAACAGACTGACTCA--ATACAGACATTTTTT-TAATA---ACAT-CTAAGTTATAAATGTAGAAA-TT-GTAA-AAGTT---ATTGCACTTTAAACAGAGTAAAGTTTC-TTTTTTGCTCAGTata
gi|7 : AA------TTGGTTATT-TTCAAAATCCTGTTCGAAACACTGC-AC----TGATATTGGTATGGCTGTGTCAGT-------TGATCATTTTAT-AACAAATCTGTATTTTCATTGGACATTTGAAGTGTAG----TTTTGTA----CCCATAAATTAA---TGATAAAGTGGACAAGGGGTGTAATCAAAAATAACGTT--TTTTAACTGAAACTGAAATTTGC--ATTGTTATTGTTGC-TTTCAA-GT--TTG-TTTTT-AAGACTTATATTAGTGAGGCATAGTTGTGAAAGAAGCAATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATTAT-AT-TG-TTTTTTCAATTGTTTGATTAACAACATATCTGTTTATGTAATGCACATTTGT---GT-ATCTACCTG-GTGGACTCCGGCATGTGCAAATCATGCAAAACAGG--A---TGTTTAAAGCTATGTTATTAT-CATTTGTGGTTAAATAAACAAGTTTTCATAATTCAAACAGACTGACACA--ATACCGACA-TTTTT-TATTA---ACAT-CTCA-TTATAAATGTTGAAA-TT-AAAA-AAGTT---ATTGAACTTTAAACAGAGTAAAGTTTCTTTTTTT-CTCAat
gi|8 : TTCATGAA------TTGATTATT-TTCAAAATCCTGTTCGACACACTAC-AC----TGATATTGGTATGGCTTCGTCATT-------TGATCATTTTGT-AACAAATCTGTATTTTCATTGGACATTGGAAGTGTGG----TTTTGTA----CCCATAAATTAA---TGATGTAGTGGACAAGAGGCATAATAAAAAATAACGTC--TTTTAACTGAAACTGAAATTTGC--ATTGTTATTGTTGCTTTTCAA-GT--TCG-TTTTA-AAGACCAGTATTAGTGAGGCATAGTTGTGAAACAAGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACAAAGTACACAAAATTAT-GT-TA-TTTTTTCAATTGT----TTAACAACATTTCTGTTTATGTAATGTACATTTGT---GT-ATCTACCTG-GTGAACTCCGGCACGTGCAAATCATGT--------------TTTTTACAGCTGGATGATTAT-CACTTGTGTTTAAATAAACATGTTTTCATCATTCAAACAGACTGTCGCA--ATACCAACA--TTTT-TATAA---ACAT-CTAAGATATTACTATAGAAA-TT-AAAA-AAGTT---ATTGCACTTTAAACAGAGAAAAGTTTCTTTTTTTGCTCAGT
gi|9 : TATACTCGGCAACAAAAAAGAAACTT--TACTCCCCATCAA------TTGGTTGTT-TTCAAATTTCTGTACGAAAGACTTC-AA----TGATATTAGTATGGATGAGTCAGTTACTTAGTAATCATTTTGA-AACATATCTGTATTTTCGTTCAATATTTAAAGAGAAGCTTTTTTTTTA----CCTTT---TTAACCTTAATAAATTAGACAAGGGACATAA-CAAAAATAACGTT--TTTTAACTGAAACCAAAAGTTGT--ATTGTTATTGTTGCTTCTCAA-GT--TTGCTTTTT-AAGATTTAAAATAACGAGGCACTGCTGTGAAACAAa
gi|9 : TGTTTGATTAATACCATGCCTGTTTATGTAATGCTTGTTTGT---GT-ATCTACCTG-TTAGACTCTGGCACGGACAAATCAC-C--AACAGA--GTTTTTTTTATGGCTGGATGAGTAT-CCCTCGTGCTTAAATAAATAAGTTTCAACTAGCCAAACCGACTGACGCA--ATACCGATA-TTTTA-TACAT---ACATCCTTATTTCTACATAAAGAAA-TC-AAAA-AAGTTATAATCGCATTTTAAAAAGAGTAAAGTGTATTTTaataatgatgtgtttgattaataccatgcctgtttatgtaatgcttgtttgtgtatctacctgttagactctggcacggacaaatcaccaacagagttttttttatggctggatgagtatccctcgtgcttaaataaataagtttcaactagccaaaccgactgacgcaataccgatattttatacatacatccttatttctacataaagaaatcaaaaaagttataatcgcattttaaaaagagtaaagtgtattttatgctgtcata
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|19 ): ATAACGCATTCGCTTTATACCAACATTTTTACACATACATCTAAATCAAACGTGTAGAAAAAAAA