lowQualScore : 11 555555555555555 66666666666666666666666666666666 9999999999999999999999999999999999999999 111 1 222222222222 1 3333 111111 1 22 11111 22222222 1 1 22 1 555555555555555555555 1111 11 5555555555 22 1 222222 33333333333333 11 666666666666 222 111 1111 11111 8888888888888888888888888888 111 888888888 1 111 111 11 1111 1 1111 111 2 1 333333333333333333333 555555555 1111 1111 3333333333
lowQualScore : 3 0 55 9999 555555555555555 8 7777 99999999999999999999999999999999 3 3 6 7 7777 5555555555555555555555555555555555555555 666 0 3 3 1 000000000000 3 44 7 55 8 6 3 6666 9999 88 4 000000 888 7 5 44 44 55555 22222222 2 3 5 5 3 9 11 5 2 2 4 4 6 0 000000000000000000000 6 99 3333 88 7777777777 7 77 5 4 666666 6 44444444444444 33 666666666666 0 000 11 5 5 333 5 3 2 888888 0 1111 77777 7777777777777777777777777777 1 3 777 2 222222222 0 777 2 4 333 8 11 8 0000 1 7777 0 8 8 222 0 1 222222222222222222222 9 0 0 0 111111111 5 66 4444 4444 8888888888
lowQualScore : . . .. .... ............... . .... ................................ . . . . .... ........................................ ... . . . . ............ . .. . .. . . . .... .... .. . ...... ... . . .. .. ..... ........ . . . . . . .. . . . . . . . ..................... . .. .... .. .......... . .. . . ...... . .............. .. ............ . ... .. . . ... . . . ...... . .... ..... ............................ . . ... . ......... . ... . . ... . .. . .... . .... . . . ... . . ..................... . . . . ......... . .. .... .... ..........
lowQualScore : 9 2 44 4444 555555555555555 0 7777 11111111111111111111111111111111 6 6 0 3 7777 6666666666666666666666666666666666666666 111 6 6 9 0 444444444444 3 66 5 00 5 3 6 3333 7777 55 3 555555 999 6 0 44 66 44444 55555555 3 6 3 4 0 6 99 0 5 0 1 3 7 2 555555555555555555555 3 22 3333 33 7777777777 3 33 0 0 000000 0 22222222222222 88 555555555555 6 666 88 6 0 000 0 2 8 666666 8 0000 88888 6666666666666666666666666666 2 2 888 5 000000000 0 555 2 6 222 0 00 0 0000 8 4444 6 0 0 444 4 4 777777777777777777777 6 7 4 4 111111111 7 22 2222 2222 6666666666
consensus : NNAATTTCTTGTCAGAATATGATATACGGATTTACCAATGAGC----TCAT---------A----CAGATCGAAAGA----CAGATAGAAA--AATTTTGTT----ATAAT----A----TGAAAATAT-T-TTTT-AATTCAAA----TAG---ATG---A--TC---TATGGAT--ATTTT-T--AN--TTTTTAGTTGGT-GATGACATAATTGTATACAGTTTTGTTTC-T-T---T-T--TTTATTGTATGCCTTTTTGA--TATCATAAACC-AACACAT--TGATGAATGACCCATCAAACGCATGAT------CATAGTTGTT--ATGTTAGTTGCAACAAAAGTCTTCC--ATATAATGT-----AG-------CTACGAGCAT-AAAATCATATAAAACAAAAATATTTGAAAGACAGATGNAATTTATTTTATAATAAACCAAACAACCTGTGGTTGATAGATAGAAAGAAAGAAACG-AACA---A-----------ACAACACGG--TG---TTAAAA--AACTG-NT------TATTTTGTA-GTTTTTCGTCGCTATAGATAATNCTTTAAATGTGGCAGGCATACTAGAAGTTCTGATTTTATAGCAAATG-------TATA--AAAA-AGG--GA----AAAAAAC-ACATTCGTATAATAGCGTAAACGTCAATAAAAAACGACTGATTTTCACGAATGACGAAA-GAGANAGGC----ACAG-----AC-TTTG-----G-TTCAAAT-CGATATTTTGN--ATAAACAAAGCAAATATA--C--C--CTT-TT---TAAAGTATTC--CA-GCCT--TTC-TTTTATTAATATAAATAATTCCGAATCGAACGTCAATCTGAAATCGTGGTATTGAGACCACAATTTC-AATTTT-CC-C-TGCATTTTTACCCAAAC-A-A--TGGCGGCCA-----TATTAATCGTCGCTTGGGACGCTGAAGGGG--ACT-N-TT-TTACCGTTGCTATACT----AAT----GCGCA--G-AGNTNTCTGCAT
Reference ( gi|2 ) : TCAATTTTTTGTCAGAATATGATATACATATTTACCAATGAGC----TCAT---------A----CAGATCTAAAGA----CAGATAGAAAGAAATTTTGTT----ATAAT----A----TGAAAATAT-T-TCTT-AATTCAAA----TA----AT----A--T----TATGTAT--ATTTTCT--AT--TTTTTACTTTGT-GATGACATGACTGTATACAGTTTTGATTC-T-T---T-T--TTTATTGTATTCCTTTTTGA--TATCACAAATC-AACACAT--TCATGAATGGCCCGTCAAACACATAAT------CATAGTTGTT--GTGTTAGCTGCCACAAACGTCTTCC--ATATAATGT-----AG-------ATACGAGCAT-AAAGTCATATTAAACAAAAATATTTGAACAACACATGCAATTTATTTTATAATAAACCAAACAACCTGTGATTGATAAATAGAAAGAAAGAAACG-AG-A---A-----------ACAACATGG--TG---TTAAAA--AACTG-TT------TATTTTGTATGTTTTTCGGCGTTATAGATAATACTTTAAATGTGGTTGGTTTACTAGAAGTTTTGATTTTATATCACCTG-------TATA--AAAA------GA----AAAAAAT-GCATTCGTATAATAGCGTAAACGTCAATAAAAAATGACTGATTTTCACGAACGACAAAA-GAGGAAAGC----ACAA-----AC-TTTG-----G-TTCAAGT-CGATATTTTGA--ATAAACAAAGCAAATATAAGTTTC--CTT-TT---TAAAATGCTC--TA-GCCT--TTC-TTTTATTAATATAAATAATTCCGAATCGAGCGTCATTCTGAAATCGTGGTAGTGTGACCACAATTTC-AATTTT-CC-C-TGCATTTTTCCCCAAAT-A-A--TGACGGTCA-----TATTTATCGTCGCTTGGGACGCTGAAGGGG--GAT-C-TT-TTATCGTTGCTATACT----AAT----GCGCA--G-AACTA-CTGCAT
gi|1 : AATTTCTTGTCAGAATATGATAAAGAGATTTATCAATGAGC----TCATGAATGAAT-A----CAGACCGAAAGA----CAGTTAGATAT---TTTTGTT----ACAAT----AA---TGAAAATAT-T-TTTTTAATTAAAA----TAG---ATG---A--TGGTCTATGGAT--ATTTTTT--TA--ATTTTAGTTGAT-AATGTCATAACTGTATAAAGTTC-GTTTC-T-T---T-TTTTTTATTGTATGCCTTTTTGA--TATCATACACC-AACACAT--TGATGA----CCCATCAAGCATATGAT------CATAGTTGTA--ATGT----------AA--GTCTTCC--ATATAATGT-----AG-------CTACGAGCAC-AAAACCATATTAAACAA----ATT----------ATGCAGATTATTTTACAATAAACCAAACAA------AT-------TAGAAAGAAAGAAACG-AACA---A-----------ACATCA
gi|12 : tAATTTCTTGTCAAAATATGATATACGGATTTAACAATGAGT----TAAT---------AAATACAGATCGAAAGA----CAGATAGAAAAAAACT--GTT----AAAAT----A------AAAATAT-T-TTTT-TATTCAAA----TAG---AT----GACC----TATGCAT--A--------AT--TTTT-AGTTGGT-GATGATATAATTGTATACAGTTTTTGTTT-C-T---T-T--TTTATTGTATGCCTTTTTGA--TAT-----------TACAT--TGATGA----CCCATCAAACGCATAAT------AATAGTTTCT--ATGTTAGTTGCAACAGAAGTATTCC--TTAAAATGTCCAA-AG-------ACAAAAACAT-AAgtataacacggattggctaccttctatttttgagactacccatataatgcgtatctgaccaaatcacgtgaacaccgtaaaaaatcgaacaagtggtgttaaaaatctaatattttgtatgttttttgtcgttatagataattctttaaatatggcaggcataatagaagttctggtttaaaaataattgtataaaaaatacattcgtataatagagtaaacgtaaaaaatgactgattttcatgaatgaagagaaaagcacagcgctggcatttgcgcgagttcaaatcgatattttttttataaacaaagcaagtatatcaacttattttaagtattcaagccattcttttagtagtacaaataattccgaattaaaaaaactgaaatcgtgataatgagcccacaatttcaatttttccgtgtattttaccaaaacaaatggcggccatatgaatcgtcgcttgggacgttgaaggatactattttaataatgcgcagtagtagtg
gi|16 : AAATTCTTGTCACAATATGATATACGGATTTACCAATGAGC----TCATTGAAT----A----CAGATTGAAAGA----CAGATAG--------------------------------TGGAAATATCT-TTTT-AATTCAAA-----A----AG----A--T----GATGGAT--A--------AT--TTTT-ATTTTGT-GATGACATAACTGTATACAGTTTTGTTTCTT-T---T-T--TTTATTGTATGCC--TTTGA--TATCATAAATC--ATACA-----ATG-ATGATC---CACACGCATGAT------CATAGTTGCT--ATGTTGGTTGCAATAA--GTCTTCC--Acg
gi|14 : AATTTCTAATCAGAATATGATATACGGATTTACCAATGAGC----TCAC---------A-----AGATCTAATGA-----------------ATTTT-----------------------------T-T-TTTT-AATTCAAA----TA----G-----A--TC---TATGGAT--ATTTTCT--AA--TT----CTTTGTTG--GACGTG----------GTTTTGATTC-TGT---TGT--TTTTTTGTATATCTTTTTGA--TATCATAAACCCAACACAT--TCATGAATGACATGTCAAGCACATGAT------CATAGTGGTT--GTGTTAGTTGCAACAA--GTCCTTT--GTGTAGTGT-----AG-------CCACGAG
gi|19 : AATTTCTTGTCAAAATACG-------TATTTACC------T----TTA----------A----AAGCTTGAAAGA----CAGATAGAA-----TTTTTTT----ATCAT----AAAAGCGAAAACAT-T-TTTTTAAAACAAACAGATA----ATG---A--TC---TATGGAT--A--------AT--TTTT-AGTTGGT-GATGACATAATTGTATTCACTT--------T-T---T-T--TTTATTGTAt
gi|6 : tATTTCTTGTCACAATATGATATACGGATTTACCAATGAGC----TCATGACATGAATA----CAGATCAAAAGA----CAGTTGGAAAAAAAAATTATT----ATAATG---A----TGAAATTTT-T-TTTT-AATTCAAA----TA----G-----A--T----GATG-ATC-AATGGAT--AA--TTTTTAGTTGGT-GATGACATAACTGTATAAAGTTTT-----------------TTTATTGTATGCCTCTTTGA--TATCATAAACC-AACACAT--TGATGA----TCCATCAGAAGCATTAT------CATAGATGCT--ATGTTAATTGCAACAGAAGTCTTCC--ATATAACGT-----AG-------TTACGACCAT-AAAATCTTATAAAACCAAA-TATTTGAAAGACAGATGAAATACACTTTATAACAAACCAAACAACCTGTGGTTGATAGATAGAAAGAAATTAAC-----A---A-----------ACATCATAG--TA---T
gi|22 : TTTTGTCAGACTATAATATACAGACTTATCATTGAGCTCAGTCAT---------A----CAGATCTGAAGA----CAGATA-AAAGAAA-TTTGTT----ATAAaacatgggttgtctcacttattcttttgagacgacccccat
gi|7 : GTCAGAAAATGATATACGGATTTACCAATGAGC----TCATGAAT-----A----TAGATAGAAAGA----CAGATAAAAAAAA---TTGTTG---ATAAT----------GGATATAT-T-TTTT-AATTCAAA----TAG---ATG---A--T----GATCTATGGAT-------AA--TTTTTAGTCGGT-GATGACATAATTGTATACAGTTTTGTTTC-T-TCTGT-T--TTTATTGTATGCCTTTTTGA--TAACATAAACC-AACACAT--TGATGA----CCCATCAAACACATGAT------TATAGTTGTT--ATGTAAGTTGCAACAAAAGTCTTCC--ATATAATGT-----AG-------TTACGACCAT-TAAATTAAATAAAAC-AAAATATTTGAAAGACAGATGAAATTTATTATATAATAAATCAAACAACCTGTGGTTTATATACAGAAAGAAAGAAGCG-AACA---A-----------ACAACAGAG--TA---Taaat
gi|5 : ATTTACCAATGAGC----TCAT---------A----AATATAGAAAGAAAGGCAGATAGAAAGTAATTTTATT----ATAACGATAA----TTAAAATAT-TGTTTT-AATTCAAA----TAGATGAT----G--TCC--TATGGAT--ATTTTCT--AA--TATTTAGTTGAC-GATGACATGATTGTATAAAGTTTTGTGTC-T-T---T-T--TTTAGTGTATGCCTTTTTGA--TATCATAAACC-AAAACAT--TGATGA----CCCATCAAGCATATG--------------------------------ACAAAAGTCTTCCATATATAATGT-----AG-------CCACGAGCAT-AAAG-CATATAAAAC-AAAATATTTGGAAGACAGATGAAATTTATTTTATAATAAACTAAACAACGTGTGGTT----AATAGAAA-AAAAAAACGAAG-A---A-----------ACAACAC-G--TG---TTaacgggttgcctcatttgtacttttgagatgacccaca
gi|3 : aacaatatatatcggcaaaatgg----CAGATCTAAAGA----CAGATAAAAA----------T----ATG-T----A----T-------T-T-TTTT-AATTCAAA----TA--------------------TGGTT--ATTTTCT--AA--TTTTTAGTTGAC-GATGACACAGCTGTATACAGTTTTGATTC-T-TG--T-T--TTTATTGTAT-------------ACCATAAACC-AACACAT--TCATGAATGACCTATCAAACACGTGAT------CATAGCTGCT--ATGTTAGTAGCAACAAA-GTCTTCC--ATGTAATGT-----AG-------CTACGAACAT-AAAATCATATGAAACAAAA-TATTTGAAAGATGGATGCAATTTATTTTATAATAAACCAAACAACATGTGGTTGATAGATAGGAAGAAAGAAACG-AA-A---AAACTATATAGTATAACACGGGTTGCCTCTGAAC--AAGTG-GTGTCTAATATTTGATA---TCTTCATCGCTATAGATAATACTTTAAATGTGGCAGGCATACTAGAAGTTCTGATTTTATAGCAAATG-------TATAATAAAA------GAAAATAAAAAACAACATTCCTATAATAGCGTCAACGTCAATAAAAATC--CTGATTTTCGAGAACGACGAAA-GAGGTGAGA----ACAA-----AC-ATTG-----GCTTTAAGT-gcctctcttctacgtttgaaacgaccccatataatgtctctctgatcaaatcgcgtgaacgtggcgttaaaaaat
gi|18 : AAAAA----CAGATAGAA-----TTTTTTTTATCATAAT----AG---CGAAAATAT-T-TTTT-AATACAAA----TAG---ATGGTGA--TC---TATGGAT--A--------AT--TTTT-AGTTGGT-GATGACAACATTGTATTCCCTTTT------------T-T--TTTATTGTACGCCTTTTTGACCCATCA-------AACACATGATCATttttctgttattaatataaataattccaaatcgaacgtcaatctgaaatcgcagtattgagaccacaatgtcaattttcccctgcattttacacaaaactttattgccgctttgtacgctaaagggactatatttttatcgttgttatactaatgt
gi|13 : tgTT----ATAAG----AA---TGAAAATAT-T-TTTT-AATTCAAA----TA----G--------------ATG-AT--GCTTTATGGATAATTTTTAGTTGGT-GATGACATAATTGTATACAGATTTGTTTC-G-T---T-T--Tagttgctatgtatg
gi|11 : ttTTC-TCT---T-T--TTTACTGTATGTCTTTTTGA--TATCACAATCC-AACACAT--TCATGAATGACCTATCAAACACATGAT------CATAGTTGTT--ATGTTAGTTGCAACAA--GTGTTCG--ATATAATAT-----AGCTATATAATATGAGCGT-AAATTTATATAAAAC-AAAATATTTGAAAGACAAATGCA----ATTTTATAATAACCCAAACAACCTGTGGTagttgcaactgaagtcttccatataatgttgttatgaccataaaataatataaaaaaaatatttgaaagacagttggaatttattttataataaccaaacaacctgtggttgatagatagaaggaaacaaacaaacaatgtaatataacaagggttgcatcacatatacttcacttga
gi|20 : tactatgaaaccatattaaaatataccaaaaagtcattttcatccaaaatgttgtttggtaccttctggcattaacccagcgatatggtATGCCTTTTTGA--TATCATAAACC-AA---------------------TCAAACA-ATGAT------CCTAGTTGTT--ATGTTAGTTGCAACAAAAGTCTT-----TATAATGT-----AG-------CTAGGAACAT-AAAATCATAAAAAACAAAAAAA--TGAAAGACAGATGCAATTTATTTTAcatacatgtgatgg
gi|13 : ACATAATTGTATACAGATTTGTTTCGTTTTAGTTGCAACTGAAGTCTTCC--ATATAATGT-----TG-------TTATGACCAT-AAAATAATAT-AAA-AAAAATATTTGAAAGACAGTTGGAATTTATTTTATAATAA-CCAAACAACCTGTGGTTGATAGATAGAAGGAAACAAAC-----A---A-----------ACAA
gi|4 : ttttataagaatgaaaatattttttaattcaaatagatgatgctttatggataatttttagttggtgatgCAAAAGTCTTCC--ACATAATGT-----AG-------CTACGAGCAT-AAAATCATATCAAAC-GAAGTATTTGAAAGACAGATGCAATTTATTTTATAATAATTCAAACAACtgtaatataacaagggttgcatcacatatacttcacttga
gi|17 : AATGTTATTAAG-------TTACGACCATTAAAATCATATAAAACAAAA-TATTTGAAAGACAAATGAATTTTATTTGATAATAAACCAAAAAACCTGTGGTTGATAGATAGAACGAAAGAAACG-AACATTTA-----------ACAACATAG--TA----TAACATGGACTGCTT------TA-CTTGTA-ATTTTgaacaaacaacatagtattatatgggttggctcccttttacatttgagacgacccccatataatgtattcctgaccaaatcgcatgaacacgacaaaaaatcgaacaagtggtgttaaaaaatgtaatattttgtaaatgtataaaaataaggaaaaaaaccattcgtttaaaagcgtaaacgtcaataaaaatgacatattttcacgaatggtgaaagagaaaggtacagcgtttacctatcgataattgaataaacaaagcaaatatacatcatttttaaagtattccagccttttgttttattgatataaataattccgaatcgaacgacaatctgaattcgtggtattgagcccacaatttctattttcctctgcattttatcaaaacaaatggcggccatataaatcgtagcttgggaggcttcaggggactattttactaac
gi|1 : AAAAAATCG-A------------------ACAA-GTGG--TG---TTAAAA--ATCTA-AT-------ATTTTGTATGTTTTTTGTCGTTATAGATAATTCTTTAAATATGGCAGGCATAATAGAAGTTCTGGTTTAAAAATAATTG-------TATA--AAAA-----------------AT-ACATTCGTATAATAGAGTAAACGT----AAAAAATGACTGATTTTCATGAATGA----A-GAGAAAAGC----ACAGCGCTGGCATTTGCGCGAG-TTCAAAT-CGATATTTTTTTTATAAACAAAGCAAGTATA----TCAACTTATT---TTAAGTATTC--AA-GCCA--TTC-TTTTAGTAGTACAAATAATTCCGAATTAAA---AAAACTGAAATCGTGATAATGAGCCCACAATTTC-AATTTT-TC-CGTGTA-TTTTACCAAAACAA-A--TGGCGGCCA-----TATGAATCGTCGCTTGGGACGTTGAAGGA---------TA-CTAT--TT----TAAT----AAT----GCGCA--G-gagacca
gi|9 : taatttcttgtcagaatatgataaagagatttatcaatgagctcatgaatgaatacagaccgaaagacagttagatatttttgttacaataatgaaaatatttttttaattaaaatagatgatggtctatggatatttttttaattttagttgataatgtcataactgtataaagttcgtttctttttttttattgtatgcctttttgatatcatacaccaacacattgatgacccatcaagcatatgatcatagttgtaatgtaagtcttccatataatgtagctacgagcacaaaaccatattaaacaaattatgcagattattttacaataaaccaaacaaattagaaagaaagaaacgaacaaacatcagtataacacggattggctaccttctatttttgagactacccatataatgcgtatctgaccaaatcacgtgaacaccgtTGCTAAAAGTTCTGATTTTATAGCACATGACTATTATATA--AAAAAAGAAAGA----AAAAAAC-ACATTCTTATAATAGCGTAAACTTCAATAAAAAATGACCGATTTTCACAAATGGCACATTG------GCCTTTACAG-----A---TTGACGA-G-TTTATAT-CGATATTTTGA--ATAAACAAAGCAAATATA--CTAC--CTT-TT---AAAAGTATTC--CA-GCCT--TTC-TTTTATTAATATAAAGAATTCTGAATCGATCATCATTCTGAAATCGTGGTAtagtagtg
gi|4 : TG-------TATA--AAAATAAG--GA----AAAAAAC--CATTCGTTTAAAAGCGTAAACGTCAATAAAAA-TGACATATTTTCACGAATGGTGAAA-GAGAAAGGT----ACAG-----CG-TTTA-----C-CT---AT-CGATAATT-GA--ATAAACAAAGCAAATATACAT--C--ATT-TT---TAAAGTATTC--CA-GCCT--TTTGTTTTATTGATATAAATAATTCCGAATCGAACGACAATCTGAATTCGTGGTATTGAGCCCACAATTTC-TATTTT-CCTC-TGCA-TTTTATCAAAACAA-A--TGGCGGCCA-----TATAAATCGTAGCTTGGGAGGCTTCAGGGG--ACT-A-TT-TTAtattaatcgttgcttgggatgctgaaggggactattcttaccgttgctatactaatgcatagtagttgtctgcatttaatgtcattttaatgttttgctctctgtttgatagaacaaaaattgcaat
gi|10 : caaaagtcttccacataatgtagctacgagcataaaatcatatcaaacgaagtatttgaaagacagatgcaatttattttataataattcaaacaacgaacaaacaacatagtattatatgggttggctcccttttacatttgagacgacccccatataatgtattcctgaccaaatcgcatgaacacgacaaaaaatcgaacaagtggtgttaaaaaatgtaatattttgtaaa----AGAACAC-GCATTTGTACA---GAGT-----TAAATAATATAC-ACT--TTTTTAAGAATTACAAAG-GAGACAGGC-----CA------------------G-CGCAGGCATGATACTTTGT--GTCAGTAAA---AATCGA-----C--TTT-TTGAGTAAAATGGTGAATA-ACATATTTC-TCTTATTCATCAGAATACTTCCGAATCGAACGCCAAT-TGGAACCCTGGTATCAAGACGAAAACTTC-AAACTT-CT-T-TGCATTGTTTCGCAAGT-A-A--CGGAGGCTAAACAGTATTTTTTGAAATT--GGATGCCAAAGCGAACAAT-T-TT-AAATT-TTGCTATACTACAAAATTTAGGCGCAGGG-AAATC-CTGCctaac
gi|3 : GCTT--TAAGTTT--TTC-TGTTATTAATATAAATAATTCCAAATCGAACGTCAATCTGAAATCGCAGTATTGAGACCACAATGTC-AATTTTCCC-C-TGCA-TTTTACACAAA---------AC------------TTTATTGCCGCTTTGTACGCTAAAGGGAC-TATAT-TT-TTATCGTTGTTATACT----AAT----G
gi|8 : cagatctaaagacagataaaaatatgtatttttttaattcaaatatggttattttctaatttttagttgacgatgacacagctgtatacagttttgattcttgtttttattgtataccataaaccaacacattcatgaatgacctatcaaacacgtgatcatagctgctatgttagtagcaacaaagtcttccatgtaatgtagctacgaacataaaatcatatgaaacaaaatatttgaaagatggatgcaatttattttataataaaccaaacaacatgtggttgatagataggaagaaagaaacgaaaaaactatatagtataacacgggttgcctctgaacaagtggtgtctaatatttgatatcttcatcgctatagataatactttaaatgtggcaggcatactagaagttctgattttatagcaaatgtataataaaagaaaataaaaaacaacattcctataatagcgtcaacgtcaataaaaatcctgattttcgagaacgacgaaagaggtgagaacaaacattgTGAGATTGTGGTATTGAGACCACAATTTCAAATTTT-CC-T-TGCATTTTATACCAAAA-ATA--TGGTGGCCA-----TATTAATCGTCACTTTGAACGCTAAAGGGG--ACTAT-TT-TTACCGTTGCTATACT----AAT----GAGCA--t
gi|23 : AT-A-AACTGGGGGGCA-----TATTAATCGTCACTTGGGATGCTGAAGGGG--ACT-CTTT-TTACCATTGCTATACT----AAT----Gnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaaaacatggtcaacagaacaacaaagagtatagaacaaaattgtaatataggccgcacaatccctatagaaggcattcacatt
gi|9 : tatcctGGT-A-----TATTAATCGTTGCTTGGGATGCTGAAGGGG--ACT-A-TTCTTACCGTTGCTATACT----AAT----GCATA--GTAGTTGTCTGCAT
2 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|15 ): TAGAAACAATGAGCCGAACAAACAACAGTAATTGGTTTTAACACGAGAAGACGACCCCTGTTATGTAACTGGCCAATCAGCATCAAGTGTAGTCACAGCAAATAATTACAATATCAAGGACAGGTGGTGTTAAAAATTTAATATTTCCATCATTGATAATGTCTACATGCGTGCTGCAGTTATAATTTAAGAACTGATCTAATAATAGATAAACGAATTATATTGCATAACAGTGTAAACTTAA
Unaligned ( gi|21 ): ATTATATAGCTGACCAATCATTGACAAGTGTGATTTTCACCACCACAAAGAATTGCAATAACTAGGACATGTGGTCTATTTTTCATCATTATTATATTAAAATCTCAACATGTGTGTTGAAGGACTGATTAAATA
Alignments
lowQualScore : 1111111 55555555555555 444444444444444444444444444444444444 3333 44444444444 111111 1111111 1 3333333333333333333333333 1111 111111111 22 2222222 44444444444 11 111 2222 555555555555555555555555555555 111 4444444444 11111 1111 1111 1111 22222222
lowQualScore : 3333333 44444444444444 88888 7777 666666666666666666666666666666666666 3 3 6 2 6666666 0000 66666666666 0 3 1 9999999 3 44 3 0 111111 44 88 44 77777 0000000 0 3 3 3 1 0 1 777 3333333333333333333333333 8888 1 999999999 22 0 1 11 11 6666666 8 00000000000 00 3 2 000 2 1 88 1 8888 888888888888888888888888888888 0 222 0 6666666666 8 22 3 6 22 6 6 888 7 6 2 55555 0 8888 66 2 3 9999 5 5 3 2222 2222 33333333
lowQualScore : ....... .............. ..... .... .................................... . . . . ....... .... ........... . . . ....... . .. . . ...... .. .. .. ..... ....... . . . . . . . ... ......................... .... . ......... .. . . .. .. ....... . ........... .. . . ... . . .. . .... .............................. . ... . .......... . .. . . .. . . ... . . . ..... . .... .. . . .... . . . .... .... ........
lowQualScore : 0000000 99999999999999 33333 1111 444444444444444444444444444444444444 3 3 7 5 7777777 9999 77777777777 4 3 8 0000000 1 22 3 4 999999 66 00 22 77777 0000000 2 3 3 5 0 1 1 888 1111111111111111111111111 8888 0 888888888 77 7 0 88 66 0000000 0 66666666666 88 2 5 888 5 0 88 0 3333 777777777777777777777777777777 8 000 8 4444444444 0 00 2 7 88 7 7 777 3 7 5 77777 2 5555 99 5 4 8888 0 0 4 1111 1111 77777777
consensus : NNAATTTCTTGTCAGAATATGATAT-------ACGGATTTACCAATGAGCTCA----T---------A----CAGATCGAAAGA----CAGATAGAA--A--AATT--TTGTT----ATAAT----A----TGAAAATAT-T-TTTT-AATTCAAATAGA---T---GATG--CTATGGATA-TTTT-T--AATTTTTAGTTGGTGATGACATAACTGTATACAG-TTTTGTTTC-T-T---T-T--TTTATTGTATGCCTTTTTGATATCATAAA-CCAACACATTGATGAATGACCCATCAAACGCATGATCATAGTTGTT--ATGTTAGTTGCAACAAAAGTCTTCC--ATATAATGT-----AGC-------TACGAGCAT-AAAATCATATAAAACAAAAATATTTGAAAGACAGATGCAATTTATTTTATAATAAACCAAACAACCTGTGGTTGATAGATAGAAAGAAAGAAACGAACA---AAC----------AACACGG--TGT---TAANA--GACTGNT------TANTTTGTA-NTTTTTCGTCGTTATAGATAATACTTTAAATGTGGCAGGCATACTAGAAGTTCTGATTTTATAGCAAATG-------TATAA-AAA-AAG---GA--AAAAAAC-GCATTCGTATAATAGCGTAAACGTCAATAAAAAACGACTGATTTTCACGAACGACGAAAGAGANAGGC----ACAG-------AC-TTTG-----G-TTCA-----AATCGATATTTTGA--ATAAACAAAGCAAATATA----C--C--CTT-TTTAAAGTATTCCAGCCTTTC-TTTTATTAATATAAATAATTCCGAATCGAACGTCAATCTGAAATCGTGGTATTGAGACCACAATTTCAA-TTTT-CC-C-TGCATTTT-TACCNAAAC-AA-TGGCGGCC--ATATTAATCGTCG--CTTGGGACGCTGAAGGGGACT---NTT-TT-ACCGTTGCTATACT----AAT----GCGCAG-AGNTAT-CTGCAT
Reference ( family-157 ) : NNAATTTCTTGTCAGAATATGATAT-------ACGGATTTACCAATGAGCTCA----T---------A----CAGATCGAAAGA----CAGATAGAA--A--AATT--TTGTT----ATAAT----A----TGAAAATAT-T-TTTT-AATTCAAATAGA---T---GAT---CTATGGATA-TTTT-T--ANTTTTTAGTTGGTGATGACATAATTGTATACAG-TTTTGTTTC-T-T---T-T--TTTATTGTATGCCTTTTTGATATCATAAA-CCAACACATTGATGAATGACCCATCAAACGCATGATCATAGTTGTT--ATGTTAGTTGCAACAAAAGTCTTCC--ATATAATGT-----AGC-------TACGAGCAT-AAAATCATATAAAACAAAAATATTTGAAAGACAGATGNAATTTATTTTATAATAAACCAAACAACCTGTGGTTGATAGATAGAAAGAAAGAAACGAACA---AAC----------AACACGG--TGT---TAAAA--AACTGNT------TATTTTGTA-GTTTTTCGTCGCTATAGATAATNCTTTAAATGTGGCAGGCATACTAGAAGTTCTGATTTTATAGCAAATG-------TATAA-AAA-AGG---GA--AAAAAAC-ACATTCGTATAATAGCGTAAACGTCAATAAAAAACGACTGATTTTCACGAATGACGAAAGAGANAGGC----ACAG-------AC-TTTG-----G-TTCA-----AATCGATATTTTGN--ATAAACAAAGCAAATATA----C--C--CTT-TTTAAAGTATTCCAGCCTTTC-TTTTATTAATATAAATAATTCCGAATCGAACGTCAATCTGAAATCGTGGTATTGAGACCACAATTTCAA-TTTT-CC-C-TGCATTTT-TACCCAAAC-AA-TGGCGGCC--ATATTAATCGTCG--CTTGGGACGCTGAAGGGGACT---NTT-TT-ACCGTTGCTATACT----AAT----GCGCAG-AGNTNT-CTGCAT
gi|1 : AATTTCTTGTCAGAATATGATAA-------AGAGATTTATCAATGAGCTCA----TGAATGAAT-A----CAGACCGAAAGA----CAGTTAGAT--A--T-TT--TTGTT----ACAAT----AA---TGAAAATAT-T-TTTTTAATTAAAATAGA---T---GATGGTCTATGGATA-TTTT-TTTAATTTT-AGTTGATAATGTCATAACTGTATAAAG-TTC-GTTTC-T-T---T-TTTTTTATTGTATGCCTTTTTGATATCATACA-CCAACACATTG----ATGACCCATCAAGCATATGATCATAGTTGTA--ATGT------------AAGTCTTCC--ATATAATGT-----AGC-------TACGAGCAC-AAAACCATATTAAACAA----ATT----------ATGCAGATTATTTTACAATAAACCAAACAA----------AT---TAGAAAGAAAGAAACGAACA---AAC----------ATCA--G--TA----TAACACGGATTGGC------TACCTTCTA-TTTTT
gi|1 : tAAAAAATCGAACA---AGT---------------GG--TGT---TAAAA--ATCTAAT-------ATTTTGTATGTTTTTTGTCGTTATAGATAATTCTTTAAATATGGCAGGCATAATAGAAGTTCTGGTTTAAAAATAATTG-------TATAA-AAA-A---------------T-ACATTCGTATAATAGAGTAAACGT----AAAAAATGACTGATTTTCATGAATGA----AGAGAAAAGC----ACAGCGCTG--GCATTTGCGCGAG-TTCA-----AATCGATATTTTTTTTATAAACAAAGCAAGTATA----T--CAACTTATTTTAAGTATTCAAGCCATTC-TTTTAGTAGTACAAATAATTCCGAATTAAAA---AAACTGAAATCGTGATAATGAGCCCACAATTTCAA-TTTT-TC-CGTGTATTTT--ACCAAAAC-AAATGGCGGCC--ATATGAATCGTCG--CTTGGGACGTTGAAGGATACT---ATT-TT-A--------A---T----AAT----GCGCAG-gagactacccatataatgcgtatctgaccaaatcacgtgaacaccgtaaaaaatcgaacaagtggtgttaaaaatctaatattttgtatgttttttgtcgttatagataattctttaaatatggcaggcataatagaagttctggtttaaaaataattgtataaaaaatacattcgtataatagagtaaacgtaaaaaatgactgattttcatgaatgaagagaaaagcacagcgctggcatttgcgcgagttcaaatcgatattttttttataaacaaagcaagtatatcaacttattttaagtattcaagccattcttttagtagtacaaataattccgaattaaaaaaactgaaatcgtgataatgagcccacaatttcaatttttccgtgtattttaccaaaacaaatggcggccatatgaatcgtcgcttgggacgttgaaggatactattttaataatgcgcagtagtagtg
gi|10 : taatttcttgtcagaatatgataaagagatttatcaatgagctcatgaatgaatacagaccgaaagacagttagatatttttgttacaataatgaaaatatttttttaattaaaatagatgatggtctatggatatttttttaattttagttgataatgtcataactgtataaagttcgtttctttttttttattgtatgcctttttgatatcatacaccaacacattgatgacccatcaagcatatgatcatagttgtaatgtaagtcttccatataatgtagctacgagcacaaaaccatattaaacaaattatgcagattattttacaataaaccaaacaaattagaaagaaagaaacgaacaaacatcagtataacacggattggctaccttctatttttgagactacccatataatgcgtatctgaccaaatcacgtgaacaccgt--AGAACAC-GCATTTGTACA---GAGT-----TAAATAATATAC-ACT--TTTTTAAGAATTACAAAGGAGACAGGCCAGCGCAGGCATGATAC-TTTG-----T-GTCAGTAAAAATCGACTTTTTGA--GTAAA-ATGGTGAATA-A----C---------------ATATT--------TC-TCTTATTCATCAGAATACTTCCGAATCGAACGCCAAT-TGGAACCCTGGTATCAAGACGAAAACTTCAA-ACTT-CT-T-TGCATTGT-TTCGCAAGT-AA-CGGAGGCTAAACAGTATTTTTTGAAATT-GGATGCCAAAGCGAACA---ATT-TTAAATTTTGCTATACTACAAAATTTAGGCGCAG-GGAAATCCTGCtagtagtg
gi|11 : GTTTC-TCT---T-T--TTTACTGTATGTCTTTTTGATATCACAAT-CCAACACATTCATGAATGACCTATCAAACACATGATCATAGTTGTT--ATGTTAGTTGCAAC--AAGTGTTCG--ATATAATAT-----AGCTATATAATATGAGCGT-AAATTTATATAAAAC-AAAATATTTGAAAGACAAATGCA----ATTTTATAATAACCCAAACAACCTGTGGT
gi|12 : tactatgaaaccatattaaaatataccaaaaagtcattttcatccaaaatgttgtttggtaccttctggcattaacccagcgatatgAATTTCTTGTCAAAATATGATAT-------ACGGATTTAACAATGAGTTAA----T---------AAATACAGATCGAAAGA----CAGATAGAA--A--AAAA--CTGTT----AAAAT----A------AAAATAT-T-TTTT-TATTCAAATAGA---T---GAC---CTATGCATA----------ATTTTTAGTTGGTGATGATATAATTGTATACAGTTTTTGTTTC---T---T-T--TTTATTGTATGCCTTTTTGATAT-----------TACATTG----ATGACCCATCAAACGCATAATAATAGTTTCT--ATGTTAGTTGCAACAGAAGTATTCC--TTAAAATGT-------C-------CA-AAG-AC-AAAAACATAcatacatgtgatgg
gi|13 : TT----ATAAG----AA---TGAAAATAT-T-TTTT-AATTCAAATAGA---T---GATGCTTTATGGATA----------ATTTTTAGTTGGTGATGACATAATTGTATACAG-ATTTGTTTC-G-T---T-T--Tacg
gi|13 : ttTTGGTGA-TGAC--AT-AATTGTATA--CAGATTTGTTTCGTTTTAGTTGCAACTGAAGTCTTCC--ATATAATGT-----TGT-------TATGACCAT-AAAATAATATAAA--AAAAATATTTGAAAGACAGTTGGAATTTATTTTATAAT-AACCAAACAACCTGTGGTTGATAGATAGAAGGAAACAAACAAACA---Aagttgcaactgaagtcttccatataatgttgttatgaccataaaataatataaaaaaaatatttgaaagacagttggaatttattttataataaccaaacaacctgtggttgatagatagaaggaaacaaacaaacaatgtaatataacaagggttgcatcacatatacttcacttga
gi|14 : ttttataagaatgaaaatattttttaattcaaatagatgatgctttatggataatttttagAATTTCTAATCAGAATATGATAT-------ACGGATTTACCAATGAGCTCA----C---------A-----AGATCTAATGA-------------------ATT--TT-----------------------------T-T-TTTT-AATTCAAATA---------GAT---CTATGGATA-TTTTCT--AATTCTTTGTTG-----GACGT----------GG-TTTTGATTC-TGT---TGT--TTTTTTGTATATCTTTTTGATATCATAAACCCAACACATTCATGAATGACATGTCAAGCACATGATCATAGTGGTT--GTGTTAGTTGCAAC--AAGTCCTTT--GTGTAGTGT-----AGC-------CACGAGtgtaatataacaagggttgcatcacatatacttcacttga
gi|16 : AAATTCTTGTCACAATATGATAT-------ACGGATTTACCAATGAGCTCA----TTGAAT----A----CAGATTGAAAGA----CAGATAG------------------------------------TGGAAATATCT-TTTT-AATTCAAAAAGA---T---GAT-------GGATAATTTT-T--ATTTT-------GTGATGACATAACTGTATACAG-TTTTGTTTCTT-T---T-T--TTTATTGTATGCC--TTTGATATCATAAA-TC-ATACA---ATG-ATGATCCAC---ACGCATGATCATAGTTGCT--ATGTTGGTTGCAAT--AAGTCTTCC--At
gi|17 : AATGTTATTAAGT-------TACGACCATTAAAATCATATAAAACAAAA-TATTTGAAAGACAAATGAATTTTATTTGATAATAAACCAAAAAACCTGTGGTTGATAGATAGAACGAAAGAAACGAACATTTAAC----------AACATAG--TA----TAACATGGACTGCT------TTACTTGTA-ATTTT
gi|18 : GAAAAA----CAGATAGAA-------TT--TTTTTTATCATAAT----AG---CGAAAATAT-T-TTTT-AATACAAATAGATGGT---GAT---CTATGGA--------T--AATTTTTAGTTGGTGATGACAACATTGTA--------TTCCCTT-T-T---T-T--TTTATTGTACGCCTTTTTGAC-CCAT----CAAACACA-TGATgagacca
gi|19 : tAATTTCTTGTCAAAATA--------------CGTATTTACC------TTTA--------------A----AAGCTTGAAAGA----CAGATAGAA-------TT--TTTTT----ATCAT----AAAAGCGAAAACAT-T-TTTTTAAAACAAACAGA---TAATGAT---CTATGGATA----------ATTTTTAGTTGGTGATGACATAATTGTATTCAC-TT--------T-T---T-T--TTTATTGTAcatagttgctatgtatg
gi|2 : tAATTTTTTGTCAGAATATGATAT-------ACATATTTACCAATGAGCTCA----T---------A----CAGATCTAAAGA----CAGATAGAAAGA--AATT--TTGTT----ATAAT----A----TGAAAATAT-T-TCTT-AATTCAAATA-A---T----AT----TATGTATA-TTTTCT--ATTTTTTACTTTGTGATGACATGACTGTATACAG-TTTTGATTC-T-T---T-T--TTTATTGTATTCCTTTTTGATATCACAAA-TCAACACATTCATGAATGGCCCGTCAAACACATAATCATAGTTGTT--GTGTTAGCTGCCACAAACGTCTTCC--ATATAATGT-----AGA-------TACGAGCAT-AAAGTCATATTAAACAAAAATATTTGAACAACACATGCAATTTATTTTATAATAAACCAAACAACCTGTGATTGATAAATAGAAAGAAAGAAACGAG-A---AAC----------AACATGG--TGT---TAAAA--AACTGTT------TATTTTGTATGTTTTTCGGCGTTATAGATAATACTTTAAATGTGGTTGGTTTACTAGAAGTTTTGATTTTATATCACCTG-------TATAA-AAA-------GA--AAAAAAT-GCATTCGTATAATAGCGTAAACGTCAATAAAAAATGACTGATTTTCACGAACGACAAAAGAGGAAAGC----ACAA-------AC-TTTG-----G-TTCA-----AGTCGATATTTTGA--ATAAACAAAGCAAATATAAGTTT--C--CTT-TTTAAAATGCTCTAGCCTTTC-TTTTATTAATATAAATAATTCCGAATCGAGCGTCATTCTGAAATCGTGGTAGTGTGACCACAATTTCAA-TTTT-CC-C-TGCATTTT-TCCCCAAAT-AA-TGACGGTC--ATATTTATCGTCG--CTTGGGACGCTGAAGGGGGAT---CTT-TT-ATCGTTGCTATACT----AAT----GCGCAG-AACTA--CTGCAT
gi|20 : tcATGCCTTTTTGATATCATAAA-CCAA-------------------TCAAACA-ATGATCCTAGTTGTT--ATGTTAGTTGCAACAAAAGTCTT-----TATAATGT-----AGC-------TAGGAACAT-AAAATCATAAAAAACAAAAAAA--TGAAAGACAGATGCAATTTATTTTA
gi|22 : TTTTGTCAGACTATAATAT-------ACAGACTTATCATTGAGCTCAGTCAT---------A----CAGATCTGAAGA----CAGATAAAA--G--AAAT--TTGTT----ATAA
gi|23 : AAAC----TGGGGGGC--ATATTAATCGTCA--CTTGGGATGCTGAAGGGGACTC--TTT-TT-ACCATTGCTATACT----AAT----Gaaat
gi|3 : tatcctat----CAGATCTAAAGA----CAGATAAAA--A------------T----ATG-T----A----T-------T-T-TTTT-AATTCAAATA------------------TGGTTA-TTTTCT--AATTTTTAGTTGACGATGACACAGCTGTATACAG-TTTTGATTC-T-TG--T-T--TTTATTGTATACC-----------ATAAA-CCAACACATTCATGAATGACCTATCAAACACGTGATCATAGCTGCT--ATGTTAGTAGCAACAAA-GTCTTCC--ATGTAATGT-----AGC-------TACGAACAT-AAAATCATATGAAACAAAA-TATTTGAAAGATGGATGCAATTTATTTTATAATAAACCAAACAACATGTGGTTGATAGATAGGAAGAAAGAAACGAAAA---AACTATATAGTATAACACGGGTTGCCTCTGAAC--AAGTGGTGTCTAATATTTGATA---TCTTCATCGCTATAGATAATACTTTAAATGTGGCAGGCATACTAGAAGTTCTGATTTTATAGCAAATG-------TATAATAAA-AGA---AAATAAAAAACAACATTCCTATAATAGCGTCAACGTCAATAAAAATC--CTGATTTTCGAGAACGACGAAAGAGGTGAGA----ACAA-------AC-ATTG-----GCTTTA-----AGT
gi|3 : AGTTTTTC-TGTTATTAATATAAATAATTCCAAATCGAACGTCAATCTGAAATCGCAGTATTGAGACCACAATGTCAA-TTTTCCC-C-TGCA-TTT-TACACAAA-------AC---------TTTATTGCCG--CTTTGTACGCT-AAAGGGACTATATTT-TT-ATCGTTGTTATACT----AAT----Gttttctgttattaatataaataattccaaatcgaacgtcaatctgaaatcgcagtattgagaccacaatgtcaattttcccctgcattttacacaaaactttattgccgctttgtacgctaaagggactatatttttatcgttgttatactaatgt
gi|4 : cagatctaaagacagataaaaatatgtatttttttaattcaaatatggttattttctaatttttagttgacgatgacacagctgtatacagttttgattcttgtttttattgtataccataaaccaacacattcatgaatgacctatcaaacacgtgatcatagctgctatgttagtagcaacaaagtcttccatgtaatgtagctacgaacataaaatcatatgaaacaaaatatttgaaagatggatgcaatttattttataataaaccaaacaacatgtggttgatagataggaagaaagaaacgaaaaaactatatagtataacacgggttgcctctgaacaagtggtgtctaatatttgatatcttcatcgctatagataatactttaaatgtggcaggcatactagaagttctgattttatagcaaatgtataataaaagaaaataaaaaacaacattcctataatagcgtcaacgtcaataaaaatcctgattttcgagaacgacgaaagaggtgagaacaaacattggctttaCAAAAGTCTTCC--ACATAATGT-----AGC-------TACGAGCAT-AAAATCATATCAAAC-GAAGTATTTGAAAGACAGATGCAATTTATTTTATAATAATTCAAACAACt
gi|4 : ATTTT---GTAAATG-------TATAA-AAATAAG---GA--AAAAAAC--CATTCGTTTAAAAGCGTAAACGTCAATAAAAA-TGACATATTTTCACGAATGGTGAAAGAGAAAGGT----ACAG-------CG-TTTA-----C-CT--------ATCGATAATT-GA--ATAAACAAAGCAAATATA----CATC--ATT-TTTAAAGTATTCCAGCCTTTTGTTTTATTGATATAAATAATTCCGAATCGAACGACAATCTGAATTCGTGGTATTGAGCCCACAATTTCTA-TTTT-CCTC-TGCA-TTT-TATCAAAACAAA-TGGCGGCC--ATATAAATCGTAG--CTTGGGAGGCTTCAGGGGACT---ATT-TT-ACgaacaaacaacatagtattatatgggttggctcccttttacatttgagacgacccccatataatgtattcctgaccaaatcgcatgaacacgacaaaaaatcgaacaagtggtgttaaaaaatgtaatattttgtaaatgtataaaaataaggaaaaaaaccattcgtttaaaagcgtaaacgtcaataaaaatgacatattttcacgaatggtgaaagagaaaggtacagcgtttacctatcgataattgaataaacaaagcaaatatacatcatttttaaagtattccagccttttgttttattgatataaataattccgaatcgaacgacaatctgaattcgtggtattgagcccacaatttctattttcctctgcattttatcaaaacaaatggcggccatataaatcgtagcttgggaggcttcaggggactattttactaac
gi|5 : caaaagtcttccacataatgtagctacgagcataaaatcatatcaaacgaagtatttgaaagacagatgcaatttattttataataattcaaacaacgaacaaacaacatagtattatatgggttggctcccttttacatttgagacgacccccatataatgtattcctgaccaaatcgcatgaacacgacaaaaaatcgaacaagtggtgttaaaaaatgtaatAATAT-ATATCGGCAAAATGGATTTACCAATGAGCTCA----T---------A----AATATAGAAAGAAAGGCAGATAGAA--AGTAATT--TTATT----ATAACGATAA----TTAAAATAT-TGTTTT-AATTCAAATAGA---T---GATGTCCTATGGATA-TTTTCT--AATATTTAGTTGACGATGACATGATTGTATAAAG-TTTTGTGTC-T-T---T-T--TTTAGTGTATGCCTTTTTGATATCATAAA-CCAAAACATTG----ATGACCCATCAA--GCA-------------T--ATG---------ACAAAAGTCTTCCATATATAATGT-----AGC-------CACGAGCAT-AAAG-CATATAAAAC-AAAATATTTGGAAGACAGATGAAATTTATTTTATAATAAACTAAACAACGTGTGGTTAATAG-----AAAAAAAAAACGAAGA---AAC----------AACAC-G--TGT---Ttaac
gi|6 : aacATTTCTTGTCACAATATGATAT-------ACGGATTTACCAATGAGCTCA----TGACATGAATA----CAGATCAAAAGA----CAGTTGGAA--A--AAAAAATTATT----ATAATG---A----TGAAATTTT-T-TTTT-AATTCAAATAGA---T---GATGATCAATGGATA----------ATTTTTAGTTGGTGATGACATAACTGTATAAAG-TTTT-----------------TTTATTGTATGCCTCTTTGATATCATAAA-CCAACACATTGATGA----TCCATCAGAAGCATTATCATAGATGCT--ATGTTAATTGCAACAGAAGTCTTCC--ATATAACGT-----AGT-------TACGACCAT-AAAATCTTATAAAAC-CAAATATTTGAAAGACAGATGAAATACACTTTATAACAAACCAAACAACCTGTGGTTGATAGATAGAAAGAAATTAACAAACA---gcctctcttctacgtttgaaacgaccccatataatgtctctctgatcaaatcgcgtgaacgtggcgttaaaaaat
gi|7 : GTCAGAAAATGATAT-------ACGGATTTACCAATGAGCTCA----TGAAT-----A----TAGATAGAAAGA----CAGATAAAA--A--AAAT--T-GTTG---ATAAT----------GGATATAT-T-TTTT-AATTCAAATAGA---T---GATGATCTATGGATA----------ATTTTTAGTCGGTGATGACATAATTGTATACAG-TTTTGTTTC-T-TCTGT-T--TTTATTGTATGCCTTTTTGATAACATAAA-CCAACACATTGATGA----CCCATCAAACACATGATTATAGTTGTT--ATGTAAGTTGCAACAAAAGTCTTCC--ATATAATGT-----AGT-------TACGACCAT-TAAATTAAATAAAAC-AAAATATTTGAAAGACAGATGAAATTTATTATATAATAAATCAAACAACCTGTGGTTTATATACAGAAAGAAAGAAGCGAACA---AAC----------AACAGAG--TA----TAACG--GGTTGCC------TCATTTGTA-CTTTTtcatagtataacatgggttgtctcacttattcttttgagacgacccccat
gi|8 : TGAGATTGTGGTATTGAGACCACAATTTCAAATTTT-CC-T-TGCATTTTATACCAAAAA-TA-TGGTGGCC--ATATTAATCGTCA--CTTTGAACGCTAAAGGGGACTA--TTT-TT-ACCGTTGCTATACT----AAT----GAGCAgagatgacccaca
gi|9 : TGCTAAAAGTTCTGATTTTATAGCACATGACTATTATATAA-AAA-AAGAAAGA--AAAAAAC-ACATTCTTATAATAGCGTAAACTTCAATAAAAAATGACCGATTTTCACAAATGGC-----ACATTGGCCTTTACAG-------A---TTGACGA-G-TTTA-----TATCGATATTTTGA--ATAAACAAAGCAAATATA----CTAC--CTT-TTAAAAGTATTCCAGCCTTTC-TTTTATTAATATAAAGAATTCTGAATCGATCATCATTCTGAAATCGTGGTATnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaaaacatggtcaacagaacaacaaagagtatagaacaaaattgtaatataggccgcacaatccctatagaaggcattcacatt
gi|9 : -AA-TCGTGGT---ATATTAATCGTTG--CTTGGGATGCTGAAGGGGACT---ATTCTT-ACCGTTGCTATACT----AAT----GCATAGTAGTTGT-CTGCATattaatcgttgcttgggatgctgaaggggactattcttaccgttgctatactaatgcatagtagttgtctgcatttaatgtcattttaatgttttgctctctgtttgatagaacaaaaattgcaat
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|15 ): TAGAAACAATGAGCCGAACAAACAACAGTAATTGGTTTTAACACGAGAAGACGACCCCTGTTATGTAACTGGCCAATCAGCATCAAGTGTAGTCACAGCAAATAATTACAATATCAAGGACAGGTGGTGTTAAAAATTTAATATTTCCATCATTGATAATGTCTACATGCGTGCTGCAGTTATAATTTAAGAACTGATCTAATAATAGATAAACGAATTATATTGCATAACAGTGTAAACTTAA
Unaligned ( gi|21 ): ATTATATAGCTGACCAATCATTGACAAGTGTGATTTTCACCACCACAAAGAATTGCAATAACTAGGACATGTGGTCTATTTTTCATCATTATTATATTAAAATCTCAACATGTGTGTTGAAGGACTGATTAAATA
Alignments
lowQualScore : 1111111 55555555555555 4444444444444444444444444444444444 222222 555555555 111111 1111111 1 2222222222222222222222222222222222222222 1111 111 2222222 333333333333 11 111 2222 555555555555555555555555555555 11 4444444444 1111 1111 1111 1111 1 22
lowQualScore : 3333333 44444444444444 88888 7777 6666666666666666666666666666666666 3 3 6 666666 666666666 0 0 3 1 9999999 3 44 3 0 111111 44 88 44 77777 0000000 0 3 3 3 1 0 0 777 7777777777777777777777777777777777777777 11 1111 111 11 11 6666666 444444444444 33 3 2 000 2 1 0 88 1 8888 888888888888888888888888888888 0 11 0 6666666666 8 22 3 6 22 6 6 888 7 6 6 1 3333 3 8888 66 2 3 9999 5 5 3 2222 2222 0 1 00
lowQualScore : ....... .............. ..... .... .................................. . . . ...... ......... . . . . ....... . .. . . ...... .. .. .. ..... ....... . . . . . . . ... ........................................ .. .... ... .. .. ....... ............ .. . . ... . . . .. . .... .............................. . .. . .......... . .. . . .. . . ... . . . . .... . .... .. . . .... . . . .... .... . . ..
lowQualScore : 0000000 99999999999999 33333 1111 4444444444444444444444444444444444 3 3 7 888888 444444444 1 4 3 8 0000000 1 22 3 4 999999 66 00 22 77777 0000000 2 3 3 5 4 1 1 000 0000000000000000000000000000000000000000 44 1111 000 88 66 0000000 111111111111 00 2 5 888 5 0 7 88 0 3333 777777777777777777777777777777 8 00 8 4444444444 0 00 2 7 88 7 7 777 3 7 7 0 5555 4 5555 99 5 4 8888 0 0 4 1111 1111 0 0 77
consensus : NNAATTTCTTGTCAGAATATGATAT-------ACGGATTTACCAATGAGCTCA----T---------A----CAGATCGAAAGA----CAGATAGAAA--AATT--TTGTT----ATAAT----A----TGAAAATAT-T-TTTT-AATTCAAATAGATGATG--CT--ATGGATATTTT-T--AATTTTTAGTTGGTGATGACATAACTGTATACAG-TTTTGTTTC-T-T---T-T--TTTATTGTATGCCTTTTTGATATCATAAA-CCAACACATTGATGAATGACCCATCAAACGCATGATCATAGTTGTT--ATGTTAGTTGCAACAAAAGTCTTCC--ATATAATGT-----AGC-------TACGAGCAT-AAAATCATATAAAACAAAAATATTTGAAAGACAGATGCAATTTATTTTATAATAAACCAAACAACCTGTGGTTGATAGATAGAAAGAAAGAAACGAACA---AAC----------AACACGGTGTT-------A-ACA-GGGT--TGNCTN--NCTTGTA-C-TTTTTCGTCGTTATAGATAATACTTTAAATGTGGCAGGCATACTAGAAGTTCTGATTTTATAGCAAATG-------TATAAAAA-AAG---GA---AAAAAAC-GCATTCGTATAATAGCGTAAACGTCAATAAAAAACGACTGATTTTCACGAACGACGAAAGAGANAGGC----ACAG-------AC-TTTG-----G-TTCA-----AATCGATATTTTGA--ATAAACAAAGCAAATATA----C--C--CTT-TTTAAAGTATTCCAGCCTTTC-TTTTATTAATATAAATAATTCCGAATCGAACGTCAATCTGAAATCGTGGTATTGAGACCACAATTTCAA-TTTT-CC-C-TGCATTTT-TAC-CAAAAC-AA-TGGCGGCC--ATATTAATCGTCG--CTTGGGACGCTGAAGGGGACT---NTT-TT-ACCGTTGCTATACT----AAT----GCGCAG-AGNTAT-CTGCAT
Reference ( family-157 ) : NNAATTTCTTGTCAGAATATGATAT-------ACGGATTTACCAATGAGCTCA----T---------A----CAGATCGAAAGA----CAGATAGAAA--AATT--TTGTT----ATAAT----A----TGAAAATAT-T-TTTT-AATTCAAATAGATGATG--CT--ATGGATATTTT-T--AATTTTTAGTTGGTGATGACATAACTGTATACAG-TTTTGTTTC-T-T---T-T--TTTATTGTATGCCTTTTTGATATCATAAA-CCAACACATTGATGAATGACCCATCAAACGCATGATCATAGTTGTT--ATGTTAGTTGCAACAAAAGTCTTCC--ATATAATGT-----AGC-------TACGAGCAT-AAAATCATATAAAACAAAAATATTTGAAAGACAGATGCAATTTATTTTATAATAAACCAAACAACCTGTGGTTGATAGATAGAAAGAAAGAAACGAACA---AAC----------AACACGGTGTT-------A-ANA--GAC--TGNTTA--NTTTGTA-N-TTTTTCGTCGTTATAGATAATACTTTAAATGTGGCAGGCATACTAGAAGTTCTGATTTTATAGCAAATG-------TATAAAAA-AAG---GA---AAAAAAC-GCATTCGTATAATAGCGTAAACGTCAATAAAAAACGACTGATTTTCACGAACGACGAAAGAGANAGGC----ACAG-------AC-TTTG-----G-TTCA-----AATCGATATTTTGA--ATAAACAAAGCAAATATA----C--C--CTT-TTTAAAGTATTCCAGCCTTTC-TTTTATTAATATAAATAATTCCGAATCGAACGTCAATCTGAAATCGTGGTATTGAGACCACAATTTCAA-TTTT-CC-C-TGCATTTT-TAC-CNAAAC-AA-TGGCGGCC--ATATTAATCGTCG--CTTGGGACGCTGAAGGGGACT---NTT-TT-ACCGTTGCTATACT----AAT----GCGCAG-AGNTAT-CTGCAT
gi|1 : AATTTCTTGTCAGAATATGATAA-------AGAGATTTATCAATGAGCTCA----TGAATGAAT-A----CAGACCGAAAGA----CAGTTAGATA--T-TT--TTGTT----ACAAT----AA---TGAAAATAT-T-TTTTTAATTAAAATAGATGATGGTCT--ATGGATATTTT-TTTAATTTT-AGTTGATAATGTCATAACTGTATAAAG-TTC-GTTTC-T-T---T-TTTTTTATTGTATGCCTTTTTGATATCATACA-CCAACACATTG----ATGACCCATCAAGCATATGATCATAGTTGTA--ATGT------------AAGTCTTCC--ATATAATGT-----AGC-------TACGAGCAC-AAAACCATATTAAACAA----ATT----------ATGCAGATTATTTTACAATAAACCAAACAA----------AT---TAGAAAGAAAGAAACGAACA---AAC----------ATCA--GTA-T-------A-ACACGGAT--TGGCTA--CCTTCTA-T-TTTT
gi|1 : tAAAAAATCGAACA---AGT---------------GGTGTT-------A-AAA--ATC--TAAT-A--TTTTGTA-TGTTTTTTGTCGTTATAGATAATTCTTTAAATATGGCAGGCATAATAGAAGTTCTGGTTTAAAAATAATTG-------TATAAAAA-A----------------T-ACATTCGTATAATAGAGTAAACGT----AAAAAATGACTGATTTTCATGAATGA----AGAGAAAAGC----ACAGCGCTG--GCATTTGCGCGAG-TTCA-----AATCGATATTTTTTTTATAAACAAAGCAAGTATA----T--CAACTTATTTTAAGTATTCAAGCCATTC-TTTTAGTAGTACAAATAATTCCGAATTAAAA---AAACTGAAATCGTGATAATGAGCCCACAATTTCAA-TTTT-TC-CGTGTATTTT--AC-CAAAAC-AAATGGCGGCC--ATATGAATCGTCG--CTTGGGACGTTGAAGGATACT---ATT-TT-A--------A---T----AAT----GCGCAG-gagactacccatataatgcgtatctgaccaaatcacgtgaacaccgtaaaaaatcgaacaagtggtgttaaaaatctaatattttgtatgttttttgtcgttatagataattctttaaatatggcaggcataatagaagttctggtttaaaaataattgtataaaaaatacattcgtataatagagtaaacgtaaaaaatgactgattttcatgaatgaagagaaaagcacagcgctggcatttgcgcgagttcaaatcgatattttttttataaacaaagcaagtatatcaacttattttaagtattcaagccattcttttagtagtacaaataattccgaattaaaaaaactgaaatcgtgataatgagcccacaatttcaatttttccgtgtattttaccaaaacaaatggcggccatatgaatcgtcgcttgggacgttgaaggatactattttaataatgcgcagtagtagtg
gi|10 : taatttcttgtcagaatatgataaagagatttatcaatgagctcatgaatgaatacagaccgaaagacagttagatatttttgttacaataatgaaaatatttttttaattaaaatagatgatggtctatggatatttttttaattttagttgataatgtcataactgtataaagttcgtttctttttttttattgtatgcctttttgatatcatacaccaacacattgatgacccatcaagcatatgatcatagttgtaatgtaagtcttccatataatgtagctacgagcacaaaaccatattaaacaaattatgcagattattttacaataaaccaaacaaattagaaagaaagaaacgaacaaacatcagtataacacggattggctaccttctatttttgagactacccatataatgcgtatctgaccaaatcacgtgaacaccgt---AGAACAC-GCATTTGTACA---GAGT-----TAAATAATATAC-ACT--TTTTTAAGAATTACAAAGGAGACAGGCCAGCGCAGGCATGATAC-TTTG-----T-GTCAGTAAAAATCGACTTTTTGA--GTAAA-ATGGTGAATA-A----C---------------ATATT--------TC-TCTTATTCATCAGAATACTTCCGAATCGAACGCCAAT-TGGAACCCTGGTATCAAGACGAAAACTTCAA-ACTT-CT-T-TGCATTGT-TTC-GCAAGT-AA-CGGAGGCTAAACAGTATTTTTTGAAATT-GGATGCCAAAGCGAACA---ATT-TTAAATTTTGCTATACTACAAAATTTAGGCGCAG-GGAAATCCTGCtagtagtg
gi|11 : GTTTC-TCT---T-T--TTTACTGTATGTCTTTTTGATATCACAAT-CCAACACATTCATGAATGACCTATCAAACACATGATCATAGTTGTT--ATGTTAGTTGCAAC--AAGTGTTCG--ATATAATAT-----AGCTATATAATATGAGCGT-AAATTTATATAAAAC-AAAATATTTGAAAGACAAATGCA----ATTTTATAATAACCCAAACAACCTGTGGT
gi|12 : tactatgaaaccatattaaaatataccaaaaagtcattttcatccaaaatgttgtttggtaccttctggcattaacccagcgatatgAATTTCTTGTCAAAATATGATAT-------ACGGATTTAACAATGAGTTAA----T---------AAATACAGATCGAAAGA----CAGATAGAAA--AAAA--CTGTT----AAAAT----A------AAAATAT-T-TTTT-TATTCAAATAGATGAC---CT--ATGCATA---------ATTTTTAGTTGGTGATGATATAATTGTATACAGTTTTTGTTTC---T---T-T--TTTATTGTATGCCTTTTTGATAT-----------TACATTG----ATGACCCATCAAACGCATAATAATAGTTTCT--ATGTTAGTTGCAACAGAAGTATTCC--TTAAAATGT-------C-------CA-AAG-AC-AAAAACATAcatacatgtgatgg
gi|13 : TT----ATAAG----AA---TGAAAATAT-T-TTTT-AATTCAAATAGATGATG--CTTTATGGATA---------ATTTTTAGTTGGTGATGACATAATTGTATACAG-ATTTGTTTC-G-T---T-T--Tacg
gi|13 : ttTTGGTGA-TGAC--AT-AATTGTATA--CAGATTTGTTTCGTTTTAGTTGCAACTGAAGTCTTCC--ATATAATGT-----TGT-------TATGACCAT-AAAATAATATAAA--AAAAATATTTGAAAGACAGTTGGAATTTATTTTATAAT-AACCAAACAACCTGTGGTTGATAGATAGAAGGAAACAAACAAACA---Aagttgcaactgaagtcttccatataatgttgttatgaccataaaataatataaaaaaaatatttgaaagacagttggaatttattttataataaccaaacaacctgtggttgatagatagaaggaaacaaacaaacaatgtaatataacaagggttgcatcacatatacttcacttga
gi|14 : ttttataagaatgaaaatattttttaattcaaatagatgatgctttatggataatttttagAATTTCTAATCAGAATATGATAT-------ACGGATTTACCAATGAGCTCA----C---------A-----AGATCTAATGA-----------------ATT--TT-----------------------------T-T-TTTT-AATTCAAATAGAT------CT--ATGGATATTTTCT--AATTCTTTGTTG-----GACGT----------GG-TTTTGATTC-TGT---TGT--TTTTTTGTATATCTTTTTGATATCATAAACCCAACACATTCATGAATGACATGTCAAGCACATGATCATAGTGGTT--GTGTTAGTTGCAAC--AAGTCCTTT--GTGTAGTGT-----AGC-------CACGAGtgtaatataacaagggttgcatcacatatacttcacttga
gi|16 : AAATTCTTGTCACAATATGATAT-------ACGGATTTACCAATGAGCTCA----TTGAAT----A----CAGATTGAAAGA----CAGATAG----------------------------------TGGAAATATCT-TTTT-AATTCAAAAAGATGATG---------GATA---------ATTTTTATTTTGTGATGACATAACTGTATACAG-TTTTGTTTCTT-T---T-T--TTTATTGTATGCC--TTTGATATCATAAA-TC-ATACA---ATG-ATGATCCAC---ACGCATGATCATAGTTGCT--ATGTTGGTTGCAAT--AAGTCTTCC--At
gi|17 : AATGTTATTAAGT-------TACGACCATTAAAATCATATAAAACAAAA-TATTTGAAAGACAAATGAATTTTATTTGATAATAAACCAAAAAACCTGTGGTTGATAGATAGAACGAAAGAAACGAACATTTAAC----------AACATAGTA-T-------A-ACATGGAC--TGCTTT--ACTTGTA-A-TTTT
gi|18 : GAAAAA----CAGATAGAA-----TT--TTTTTTATCATAAT----AG---CGAAAATAT-T-TTTT-AATACAAATAGATGGTGATCT--ATGGA-------T--AATTTTTAGTTGGTGATGACAACATTGTA--------TTCCCTT-T-T---T-T--TTTATTGTACGCCTTTTTGAC-CCAT----CAAACACA-TGATgagacca
gi|19 : tAATTTCTTGTCAAAATA--------------CGTATTTACC------TTTA--------------A----AAGCTTGAAAGA----CAGATAGAA-----TT--TTTTT----ATCAT----AAAAGCGAAAACAT-T-TTTTTAAAACAAACAGATAATGATCT--ATGGATA---------ATTTTTAGTTGGTGATGACATAATTGTATTCAC-TT--------T-T---T-T--TTTATTGTAcatagttgctatgtatg
gi|2 : tAATTTTTTGTCAGAATATGATAT-------ACATATTTACCAATGAGCTCA----T---------A----CAGATCTAAAGA----CAGATAGAAAGAAATT--TTGTT----ATAAT----A----TGAAAATAT-T-TCTT-AATTCAAATA----ATA--TT--ATGTATATTTTCT--ATTTTTTACTTTGTGATGACATGACTGTATACAG-TTTTGATTC-T-T---T-T--TTTATTGTATTCCTTTTTGATATCACAAA-TCAACACATTCATGAATGGCCCGTCAAACACATAATCATAGTTGTT--GTGTTAGCTGCCACAAACGTCTTCC--ATATAATGT-----AGA-------TACGAGCAT-AAAGTCATATTAAACAAAAATATTTGAACAACACATGCAATTTATTTTATAATAAACCAAACAACCTGTGATTGATAAATAGAAAGAAAGAAACGAG-A---AAC----------AACATGGTGTT-------A-AAA--AAC--TGTTTA--TTTTGTATG-TTTTTCGGCGTTATAGATAATACTTTAAATGTGGTTGGTTTACTAGAAGTTTTGATTTTATATCACCTG-------TATAAAAA-------GA---AAAAAAT-GCATTCGTATAATAGCGTAAACGTCAATAAAAAATGACTGATTTTCACGAACGACAAAAGAGGAAAGC----ACAA-------AC-TTTG-----G-TTCA-----AGTCGATATTTTGA--ATAAACAAAGCAAATATAAGTTT--C--CTT-TTTAAAATGCTCTAGCCTTTC-TTTTATTAATATAAATAATTCCGAATCGAGCGTCATTCTGAAATCGTGGTAGTGTGACCACAATTTCAA-TTTT-CC-C-TGCATTTT-TCC-CCAAAT-AA-TGACGGTC--ATATTTATCGTCG--CTTGGGACGCTGAAGGGGGAT---CTT-TT-ATCGTTGCTATACT----AAT----GCGCAG-AACTA--CTGCAT
gi|20 : tcATGCCTTTTTGATATCATAAA-CCAA-------------------TCAAACA-ATGATCCTAGTTGTT--ATGTTAGTTGCAACAAAAGTCTT-----TATAATGT-----AGC-------TAGGAACAT-AAAATCATAAAAAACAAAAAAA--TGAAAGACAGATGCAATTTATTTTA
gi|22 : TTTTGTCAGACTATAATAT-------ACAGACTTATCATTGAGCTCAGTCAT---------A----CAGATCTGAAGA----CAGATAAAAG--AAAT--TTGTT----ATAA
gi|23 : AAAC----TGGGGGGC--ATATTAATCGTCA--CTTGGGATGCTGAAGGGGACTC--TTT-TT-ACCATTGCTATACT----AAT----Gaaat
gi|3 : tatcctat----CAGATCTAAAGA----CAGATAAAAA------------T----ATG-T----A----T-------T-T-TTTT-AATTCAAATA--------------TGGTTATTTTCT--AATTTTTAGTTGACGATGACACAGCTGTATACAG-TTTTGATTC-T-TG--T-T--TTTATTGTATACC-----------ATAAA-CCAACACATTCATGAATGACCTATCAAACACGTGATCATAGCTGCT--ATGTTAGTAGCAACAAA-GTCTTCC--ATGTAATGT-----AGC-------TACGAACAT-AAAATCATATGAAACAAAA-TATTTGAAAGATGGATGCAATTTATTTTATAATAAACCAAACAACATGTGGTTGATAGATAGGAAGAAAGAAACGAAAA---AACTATATAGTATAACACGG-GTTGCCTCTGA-ACA--AGTGGTGTCTAATATTTG-A-T-ATCTTCATCGCTATAGATAATACTTTAAATGTGGCAGGCATACTAGAAGTTCTGATTTTATAGCAAATG-------TATAATAA-AAG---AAAATAAAAAACAACATTCCTATAATAGCGTCAACGTCAATAAAAATC--CTGATTTTCGAGAACGACGAAAGAGGTGAGA----ACAA-------AC-ATTG-----GCTTTA-----AGT
gi|3 : AGTTTTTC-TGTTATTAATATAAATAATTCCAAATCGAACGTCAATCTGAAATCGCAGTATTGAGACCACAATGTCAA-TTTTCCC-C-TGCA-TTT-TACACAAAAC-----------------TTTATTGCCG--CTTTGTACGCT-AAAGGGACTATATTT-TT-ATCGTTGTTATACT----AAT----Gttttctgttattaatataaataattccaaatcgaacgtcaatctgaaatcgcagtattgagaccacaatgtcaattttcccctgcattttacacaaaactttattgccgctttgtacgctaaagggactatatttttatcgttgttatactaatgt
gi|4 : cagatctaaagacagataaaaatatgtatttttttaattcaaatatggttattttctaatttttagttgacgatgacacagctgtatacagttttgattcttgtttttattgtataccataaaccaacacattcatgaatgacctatcaaacacgtgatcatagctgctatgttagtagcaacaaagtcttccatgtaatgtagctacgaacataaaatcatatgaaacaaaatatttgaaagatggatgcaatttattttataataaaccaaacaacatgtggttgatagataggaagaaagaaacgaaaaaactatatagtataacacgggttgcctctgaacaagtggtgtctaatatttgatatcttcatcgctatagataatactttaaatgtggcaggcatactagaagttctgattttatagcaaatgtataataaaagaaaataaaaaacaacattcctataatagcgtcaacgtcaataaaaatcctgattttcgagaacgacgaaagaggtgagaacaaacattggctttaCAAAAGTCTTCC--ACATAATGT-----AGC-------TACGAGCAT-AAAATCATATCAAAC-GAAGTATTTGAAAGACAGATGCAATTTATTTTATAATAATTCAAACAACt
gi|4 : AACGAACA---AAC----------AACATAGTATT-------ATATG--GGT--TGGCTC--CCTTTTA-C-ATTTgaacaaacaacatagtattatatgggttggctcccttttacatttgagacgacccccatataatgtattcctgaccaaatcgcatgaacacgacaaaaaatcgaacaagtggtgttaaaaaatgtaatattttgtaaatgtataaaaataaggaaaaaaaccattcgtttaaaagcgtaaacgtcaataaaaatgacatattttcacgaatggtgaaagagaaaggtacagcgtttacctatcgataattgaataaacaaagcaaatatacatcatttttaaagtattccagccttttgttttattgatataaataattccgaatcgaacgacaatctgaattcgtggtattgagcccacaatttctattttcctctgcattttatcaaaacaaatggcggccatataaatcgtagcttgggaggcttcaggggactattttactaac
gi|4 : caaaagtcttccacataatgtagctacgagcataaaatcatatcaaacgaagtatttgaaagacagatgcaatttattttataataattcaaacATTTT---GTAAATG-------TATAAAAATAAG---GA---AAAAAAC--CATTCGTTTAAAAGCGTAAACGTCAATAAAAA-TGACATATTTTCACGAATGGTGAAAGAGAAAGGT----ACAG-------CG-TTTA-----C-CT--------ATCGATAATT-GA--ATAAACAAAGCAAATATA----CATC--ATT-TTTAAAGTATTCCAGCCTTTTGTTTTATTGATATAAATAATTCCGAATCGAACGACAATCTGAATTCGTGGTATTGAGCCCACAATTTCTA-TTTT-CCTC-TGCA-TTT-TAT-CAAAACAAA-TGGCGGCC--ATATAAATCGTAG--CTTGGGAGGCTTCAGGGGACT---ATT-TT-ACgagacgacccccatataatgtattcctgaccaaatcgcatgaacacgacaaaaaatcgaacaagtggtgttaaaaaatgtaatattttgtaaatgtataaaaataaggaaaaaaaccattcgtttaaaagcgtaaacgtcaataaaaatgacatattttcacgaatggtgaaagagaaaggtacagcgtttacctatcgataattgaataaacaaagcaaatatacatcatttttaaagtattccagccttttgttttattgatataaataattccgaatcgaacgacaatctgaattcgtggtattgagcccacaatttctattttcctctgcattttatcaaaacaaatggcggccatataaatcgtagcttgggaggcttcaggggactattttactaac
gi|5 : caaaagtcttccacataatgtagctacgagcataaaatcatatcaaacgaagtatttgaaagacagatgcaatttattttataataattcaaacaacgaacaaacaacatagtattatatgggttggctcccttttacatttgagacgacccccatataatgtattcctgaccaaatcgcatgaacacgacaaaaaatcgaacaagtggtgttaaaaaatgtaatAATAT-ATATCGGCAAAATGGATTTACCAATGAGCTCA----T---------A----AATATAGAAAGAAAGGCAGATAGAAAGTAATT--TTATT----ATAACGATAA----TTAAAATAT-TGTTTT-AATTCAAATAGATGATGTCCT--ATGGATATTTTCT--AATATTTAGTTGACGATGACATGATTGTATAAAG-TTTTGTGTC-T-T---T-T--TTTAGTGTATGCCTTTTTGATATCATAAA-CCAAAACATTG----ATGACCCATCAA--GCA-------------T--ATG---------ACAAAAGTCTTCCATATATAATGT-----AGC-------CACGAGCAT-AAAG-CATATAAAAC-AAAATATTTGGAAGACAGATGAAATTTATTTTATAATAAACTAAACAACGTGTGGTTAATAG-----AAAAAAAAAACGAAGA---AAC----------AACAC-GTGTT-------taac
gi|6 : aacATTTCTTGTCACAATATGATAT-------ACGGATTTACCAATGAGCTCA----TGACATGAATA----CAGATCAAAAGA----CAGTTGGAAA--AAAAAATTATT----ATAATG---A----TGAAATTTT-T-TTTT-AATTCAAATAGATGATG--ATCAATGGATA---------ATTTTTAGTTGGTGATGACATAACTGTATAAAG-TTTT-----------------TTTATTGTATGCCTCTTTGATATCATAAA-CCAACACATTGATGA----TCCATCAGAAGCATTATCATAGATGCT--ATGTTAATTGCAACAGAAGTCTTCC--ATATAACGT-----AGT-------TACGACCAT-AAAATCTTATAAAAC-CAAATATTTGAAAGACAGATGAAATACACTTTATAACAAACCAAACAACCTGTGGTTGATAGAT----AGAAAGAAATTAACA---AAC----------ATCATAGTA-T-------A-ACATGGGT--TGTCTC--ACTTATT-C-TTTTgcctctcttctacgtttgaaacgaccccatataatgtctctctgatcaaatcgcgtgaacgtggcgttaaaaaat
gi|7 : GTCAGAAAATGATAT-------ACGGATTTACCAATGAGCTCA----TGAAT-----A----TAGATAGAAAGA----CAGATAAAAA--AAAT--T-GTTG---ATAAT----------GGATATAT-T-TTTT-AATTCAAATAGATGATGATCT--ATGGATA---------ATTTTTAGTCGGTGATGACATAATTGTATACAG-TTTTGTTTC-T-TCTGT-T--TTTATTGTATGCCTTTTTGATAACATAAA-CCAACACATTGATGA----CCCATCAAACACATGATTATAGTTGTT--ATGTAAGTTGCAACAAAAGTCTTCC--ATATAATGT-----AGT-------TACGACCAT-TAAATTAAATAAAAC-AAAATATTTGAAAGACAGATGAAATTTATTATATAATAAATCAAACAACCTGTGGTTTATATACAGAAAGAAAGAAGCGAACA---AAC----------AACAGAGTA-T-------A-ACG--GGT--TGCCTC--ATTTGTA-C-TTTTgagacgacccccat
gi|8 : TGAGATTGTGGTATTGAGACCACAATTTCAAATTTT-CC-T-TGCATTTTATAC-CAAAAA-TA-TGGTGGCC--ATATTAATCGTCA--CTTTGAACGCTAAAGGGGACTA--TTT-TT-ACCGTTGCTATACT----AAT----GAGCAgagatgacccaca
gi|9 : TGCTAAAAGTTCTGATTTTATAGCACATGACTATTATATAAAAA-AAGAAAGA---AAAAAAC-ACATTCTTATAATAGCGTAAACTTCAATAAAAAATGACCGATTTTCACAAATGGC-----ACATTGGCCTTTACAG-------A---TTGACGA-G-TTTA-----TATCGATATTTTGA--ATAAACAAAGCAAATATA----CTAC--CTT-TTAAAAGTATTCCAGCCTTTC-TTTTATTAATATAAAGAATTCTGAATCGATCATCATTCTGAAATCGTGGTATnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaaaacatggtcaacagaacaacaaagagtatagaacaaaattgtaatataggccgcacaatccctatagaaggcattcacatt
gi|9 : -AA-TCGTGGT---ATATTAATCGTTG--CTTGGGATGCTGAAGGGGACT---ATTCTT-ACCGTTGCTATACT----AAT----GCATAGTAGTTGT-CTGCATattaatcgttgcttgggatgctgaaggggactattcttaccgttgctatactaatgcatagtagttgtctgcatttaatgtcattttaatgttttgctctctgtttgatagaacaaaaattgcaat
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|15 ): TAGAAACAATGAGCCGAACAAACAACAGTAATTGGTTTTAACACGAGAAGACGACCCCTGTTATGTAACTGGCCAATCAGCATCAAGTGTAGTCACAGCAAATAATTACAATATCAAGGACAGGTGGTGTTAAAAATTTAATATTTCCATCATTGATAATGTCTACATGCGTGCTGCAGTTATAATTTAAGAACTGATCTAATAATAGATAAACGAATTATATTGCATAACAGTGTAAACTTAA
Unaligned ( gi|21 ): ATTATATAGCTGACCAATCATTGACAAGTGTGATTTTCACCACCACAAAGAATTGCAATAACTAGGACATGTGGTCTATTTTTCATCATTATTATATTAAAATCTCAACATGTGTGTTGAAGGACTGATTAAATA
Alignments
lowQualScore : 1111111 55555555555555 4444444444444444444444444444444444 222222 555555555 111111 1111111 1 4444444444444 2222222222222 1111111 2222222 333333333333 11 111 2222 555555555555555555555555555555 11 4444444444 1111 1111 1111 1111 1 22
lowQualScore : 3333333 44444444444444 88888 7777 6666666666666666666666666666666666 3 3 6 666666 666666666 0 0 3 1 9999999 3 44 3 0 111111 44 88 44 77777 0000000 0 3 3 3 1 0 0 777 4 3333333333333 1 2222222222222 22 2 4444444 11 11 6666666 444444444444 33 3 2 000 2 1 0 88 1 8888 888888888888888888888888888888 0 11 0 6666666666 8 22 3 6 22 6 6 888 7 6 6 3333 3 8888 66 2 3 9999 5 5 3 2222 2222 0 1 00
lowQualScore : ....... .............. ..... .... .................................. . . . ...... ......... . . . . ....... . .. . . ...... .. .. .. ..... ....... . . . . . . . ... . ............. . ............. .. . ....... .. .. ....... ............ .. . . ... . . . .. . .... .............................. . .. . .......... . .. . . .. . . ... . . . .... . .... .. . . .... . . . .... .... . . ..
lowQualScore : 0000000 99999999999999 33333 1111 4444444444444444444444444444444444 3 3 7 888888 444444444 1 4 3 8 0000000 1 22 3 4 999999 66 00 22 77777 0000000 2 3 3 5 4 1 1 000 0 3333333333333 0 0000000000000 00 3 0000000 88 66 0000000 111111111111 00 2 5 888 5 0 7 88 0 3333 777777777777777777777777777777 8 00 8 4444444444 0 00 2 7 88 7 7 777 3 7 7 5555 4 5555 99 5 4 8888 0 0 4 1111 1111 0 0 77
consensus : NNAATTTCTTGTCAGAATATGATAT-------ACGGATTTACCAATGAGCTCA----T---------A----CAGATCGAAAGA----CAGATAGAAA--AATT--TTGTT----ATAAT----A----TGAAAATAT-T-TTTT-AATTCAAATAGATGATG--CT--ATGGATATTTT-T--AATTTTTAGTTGGTGATGACATAACTGTATACAG-TTTTGTTTC-T-T---T-T--TTTATTGTATGCCTTTTTGATATCATAAA-CCAACACATTGATGAATGACCCATCAAACGCATGATCATAGTTGTT--ATGTTAGTTGCAACAAAAGTCTTCC--ATATAATGT-----AGC-------TACGAGCAT-AAAATCATATAAAACAAAAATATTTGAAAGACAGATGCAATTTATTTTATAATAAACCAAACAACCTGTGGTTGATAGATAGAAAGAAAGAAACGAACA---A-ACAACATAGTA-TAAC-A-GGGTTGCC-------------TCNCTTGTAC-T-----TTTTCGTCGTTATAGATAATACTTTAAATGTGGCAGGCATACTAGAAGTTCTGATTTTATAGCAAATG-------TATAAAAA-AAG---GA---AAAAAAC-GCATTCGTATAATAGCGTAAACGTCAATAAAAAACGACTGATTTTCACGAACGACGAAAGAGANAGGC----ACAG-------AC-TTTG-----G-TTCA-----AATCGATATTTTGA--ATAAACAAAGCAAATATA----C--C--CTT-TTTAAAGTATTCCAGCCTTTC-TTTTATTAATATAAATAATTCCGAATCGAACGTCAATCTGAAATCGTGGTATTGAGACCACAATTTCAA-TTTT-CC-C-TGCATTTT-TAC-CAAAAC-AA-TGGCGGCC--ATATTAATCGTCG--CTTGGGACGCTGAAGGGGACT---NTT-TT-ACCGTTGCTATACT----AAT----GCGCAG-AGNTAT-CTGCAT
Reference ( family-157 ) : NNAATTTCTTGTCAGAATATGATAT-------ACGGATTTACCAATGAGCTCA----T---------A----CAGATCGAAAGA----CAGATAGAAA--AATT--TTGTT----ATAAT----A----TGAAAATAT-T-TTTT-AATTCAAATAGATGATG--CT--ATGGATATTTT-T--AATTTTTAGTTGGTGATGACATAACTGTATACAG-TTTTGTTTC-T-T---T-T--TTTATTGTATGCCTTTTTGATATCATAAA-CCAACACATTGATGAATGACCCATCAAACGCATGATCATAGTTGTT--ATGTTAGTTGCAACAAAAGTCTTCC--ATATAATGT-----AGC-------TACGAGCAT-AAAATCATATAAAACAAAAATATTTGAAAGACAGATGCAATTTATTTTATAATAAACCAAACAACCTGTGGTTGATAGATAGAAAGAAAGAAACGAACA---A-ACAACACGGTGTTAAC-A-GGGTTGNC-------------TNNCTTGTAC-T-----TTTTCGTCGTTATAGATAATACTTTAAATGTGGCAGGCATACTAGAAGTTCTGATTTTATAGCAAATG-------TATAAAAA-AAG---GA---AAAAAAC-GCATTCGTATAATAGCGTAAACGTCAATAAAAAACGACTGATTTTCACGAACGACGAAAGAGANAGGC----ACAG-------AC-TTTG-----G-TTCA-----AATCGATATTTTGA--ATAAACAAAGCAAATATA----C--C--CTT-TTTAAAGTATTCCAGCCTTTC-TTTTATTAATATAAATAATTCCGAATCGAACGTCAATCTGAAATCGTGGTATTGAGACCACAATTTCAA-TTTT-CC-C-TGCATTTT-TAC-CAAAAC-AA-TGGCGGCC--ATATTAATCGTCG--CTTGGGACGCTGAAGGGGACT---NTT-TT-ACCGTTGCTATACT----AAT----GCGCAG-AGNTAT-CTGCAT
gi|1 : AATTTCTTGTCAGAATATGATAA-------AGAGATTTATCAATGAGCTCA----TGAATGAAT-A----CAGACCGAAAGA----CAGTTAGATA--T-TT--TTGTT----ACAAT----AA---TGAAAATAT-T-TTTTTAATTAAAATAGATGATGGTCT--ATGGATATTTT-TTTAATTTT-AGTTGATAATGTCATAACTGTATAAAG-TTC-GTTTC-T-T---T-TTTTTTATTGTATGCCTTTTTGATATCATACA-CCAACACATTG----ATGACCCATCAAGCATATGATCATAGTTGTA--ATGT------------AAGTCTTCC--ATATAATGT-----AGC-------TACGAGCAC-AAAACCATATTAAACAA----ATT----------ATGCAGATTATTTTACAATAAACCAAACAA----------AT---TAGAAAGAAAGAAACGAACA---A-ACATCA--GTA-TAAC-ACGGATTGGC-------------TACCTTCTAT-T-----TTT
gi|1 : tAAAAAATCGAACA---A-GT-----GGTGTTAAA-A-A--TCTAA-------------TATTTTGTATGT-----TTTTTGTCGTTATAGATAATTCTTTAAATATGGCAGGCATAATAGAAGTTCTGGTTTAAAAATAATTG-------TATAAAAA-A----------------T-ACATTCGTATAATAGAGTAAACGT----AAAAAATGACTGATTTTCATGAATGA----AGAGAAAAGC----ACAGCGCTG--GCATTTGCGCGAG-TTCA-----AATCGATATTTTTTTTATAAACAAAGCAAGTATA----T--CAACTTATTTTAAGTATTCAAGCCATTC-TTTTAGTAGTACAAATAATTCCGAATTAAAA---AAACTGAAATCGTGATAATGAGCCCACAATTTCAA-TTTT-TC-CGTGTATTTT--AC-CAAAAC-AAATGGCGGCC--ATATGAATCGTCG--CTTGGGACGTTGAAGGATACT---ATT-TT-A--------A---T----AAT----GCGCAG-gagactacccatataatgcgtatctgaccaaatcacgtgaacaccgtaaaaaatcgaacaagtggtgttaaaaatctaatattttgtatgttttttgtcgttatagataattctttaaatatggcaggcataatagaagttctggtttaaaaataattgtataaaaaatacattcgtataatagagtaaacgtaaaaaatgactgattttcatgaatgaagagaaaagcacagcgctggcatttgcgcgagttcaaatcgatattttttttataaacaaagcaagtatatcaacttattttaagtattcaagccattcttttagtagtacaaataattccgaattaaaaaaactgaaatcgtgataatgagcccacaatttcaatttttccgtgtattttaccaaaacaaatggcggccatatgaatcgtcgcttgggacgttgaaggatactattttaataatgcgcagtagtagtg
gi|10 : taatttcttgtcagaatatgataaagagatttatcaatgagctcatgaatgaatacagaccgaaagacagttagatatttttgttacaataatgaaaatatttttttaattaaaatagatgatggtctatggatatttttttaattttagttgataatgtcataactgtataaagttcgtttctttttttttattgtatgcctttttgatatcatacaccaacacattgatgacccatcaagcatatgatcatagttgtaatgtaagtcttccatataatgtagctacgagcacaaaaccatattaaacaaattatgcagattattttacaataaaccaaacaaattagaaagaaagaaacgaacaaacatcagtataacacggattggctaccttctatttttgagactacccatataatgcgtatctgaccaaatcacgtgaacaccgt---AGAACAC-GCATTTGTACA---GAGT-----TAAATAATATAC-ACT--TTTTTAAGAATTACAAAGGAGACAGGCCAGCGCAGGCATGATAC-TTTG-----T-GTCAGTAAAAATCGACTTTTTGA--GTAAA-ATGGTGAATA-A----C---------------ATATT--------TC-TCTTATTCATCAGAATACTTCCGAATCGAACGCCAAT-TGGAACCCTGGTATCAAGACGAAAACTTCAA-ACTT-CT-T-TGCATTGT-TTC-GCAAGT-AA-CGGAGGCTAAACAGTATTTTTTGAAATT-GGATGCCAAAGCGAACA---ATT-TTAAATTTTGCTATACTACAAAATTTAGGCGCAG-GGAAATCCTGCtagtagtg
gi|11 : GTTTC-TCT---T-T--TTTACTGTATGTCTTTTTGATATCACAAT-CCAACACATTCATGAATGACCTATCAAACACATGATCATAGTTGTT--ATGTTAGTTGCAAC--AAGTGTTCG--ATATAATAT-----AGCTATATAATATGAGCGT-AAATTTATATAAAAC-AAAATATTTGAAAGACAAATGCA----ATTTTATAATAACCCAAACAACCTGTGGT
gi|12 : tactatgaaaccatattaaaatataccaaaaagtcattttcatccaaaatgttgtttggtaccttctggcattaacccagcgatatgAATTTCTTGTCAAAATATGATAT-------ACGGATTTAACAATGAGTTAA----T---------AAATACAGATCGAAAGA----CAGATAGAAA--AAAA--CTGTT----AAAAT----A------AAAATAT-T-TTTT-TATTCAAATAGATGAC---CT--ATGCATA---------ATTTTTAGTTGGTGATGATATAATTGTATACAGTTTTTGTTTC---T---T-T--TTTATTGTATGCCTTTTTGATAT-----------TACATTG----ATGACCCATCAAACGCATAATAATAGTTTCT--ATGTTAGTTGCAACAGAAGTATTCC--TTAAAATGT-------C-------CA-AAG-AC-AAAAACATAcatacatgtgatgg
gi|13 : TT----ATAAG----AA---TGAAAATAT-T-TTTT-AATTCAAATAGATGATG--CTTTATGGATA---------ATTTTTAGTTGGTGATGACATAATTGTATACAG-ATTTGTTTC-G-T---T-T--Tacg
gi|13 : ttTTGGTGA-TGAC--AT-AATTGTATA--CAGATTTGTTTCGTTTTAGTTGCAACTGAAGTCTTCC--ATATAATGT-----TGT-------TATGACCAT-AAAATAATATAAA--AAAAATATTTGAAAGACAGTTGGAATTTATTTTATAAT-AACCAAACAACCTGTGGTTGATAGATAGAAGGAAACAAACAAACA---ATGTAATA------TAACAA-GGGTTGCA-------------TCACATATAC-T-----Tagttgcaactgaagtcttccatataatgttgttatgaccataaaataatataaaaaaaatatttgaaagacagttggaatttattttataataaccaaacaacctgtggttgatagatagaaggaaacaaacaaacaatgtaatataacaagggttgcatcacatatacttcacttga
gi|14 : ttttataagaatgaaaatattttttaattcaaatagatgatgctttatggataatttttagAATTTCTAATCAGAATATGATAT-------ACGGATTTACCAATGAGCTCA----C---------A-----AGATCTAATGA-----------------ATT--TT-----------------------------T-T-TTTT-AATTCAAATAGAT------CT--ATGGATATTTTCT--AATTCTTTGTTG-----GACGT----------GG-TTTTGATTC-TGT---TGT--TTTTTTGTATATCTTTTTGATATCATAAACCCAACACATTCATGAATGACATGTCAAGCACATGATCATAGTGGTT--GTGTTAGTTGCAAC--AAGTCCTTT--GTGTAGTGT-----AGC-------CACGAGcacttga
gi|16 : AAATTCTTGTCACAATATGATAT-------ACGGATTTACCAATGAGCTCA----TTGAAT----A----CAGATTGAAAGA----CAGATAG----------------------------------TGGAAATATCT-TTTT-AATTCAAAAAGATGATG---------GATA---------ATTTTTATTTTGTGATGACATAACTGTATACAG-TTTTGTTTCTT-T---T-T--TTTATTGTATGCC--TTTGATATCATAAA-TC-ATACA---ATG-ATGATCCAC---ACGCATGATCATAGTTGCT--ATGTTGGTTGCAAT--AAGTCTTCC--At
gi|17 : AATGTTATTAAGT-------TACGACCATTAAAATCATATAAAACAAAA-TATTTGAAAGACAAATGAATTTTATTTGATAATAAACCAAAAAACCTGTGGTTGATAGATAGAACGAAAGAAACGAACATTTA-ACAACATAGTA-TAAC-ATGGACTGCT-------------TTACTTGTAA-T-----TTT
gi|18 : GAAAAA----CAGATAGAA-----TT--TTTTTTATCATAAT----AG---CGAAAATAT-T-TTTT-AATACAAATAGATGGTGATCT--ATGGA-------T--AATTTTTAGTTGGTGATGACAACATTGTA--------TTCCCTT-T-T---T-T--TTTATTGTACGCCTTTTTGAC-CCAT----CAAACACA-TGATgagacca
gi|19 : tAATTTCTTGTCAAAATA--------------CGTATTTACC------TTTA--------------A----AAGCTTGAAAGA----CAGATAGAA-----TT--TTTTT----ATCAT----AAAAGCGAAAACAT-T-TTTTTAAAACAAACAGATAATGATCT--ATGGATA---------ATTTTTAGTTGGTGATGACATAATTGTATTCAC-TT--------T-T---T-T--TTTATTGTAcatagttgctatgtatg
gi|2 : tAATTTTTTGTCAGAATATGATAT-------ACATATTTACCAATGAGCTCA----T---------A----CAGATCTAAAGA----CAGATAGAAAGAAATT--TTGTT----ATAAT----A----TGAAAATAT-T-TCTT-AATTCAAATA----ATA--TT--ATGTATATTTTCT--ATTTTTTACTTTGTGATGACATGACTGTATACAG-TTTTGATTC-T-T---T-T--TTTATTGTATTCCTTTTTGATATCACAAA-TCAACACATTCATGAATGGCCCGTCAAACACATAATCATAGTTGTT--GTGTTAGCTGCCACAAACGTCTTCC--ATATAATGT-----AGA-------TACGAGCAT-AAAGTCATATTAAACAAAAATATTTGAACAACACATGCAATTTATTTTATAATAAACCAAACAACCTGTGATTGATAAATAGAAAGAAAGAAACGAG-A---A-ACAACATGGTGTTAA--A-AAACTGTT-------------TATTTTGTATGT-----TTTTCGGCGTTATAGATAATACTTTAAATGTGGTTGGTTTACTAGAAGTTTTGATTTTATATCACCTG-------TATAAAAA-------GA---AAAAAAT-GCATTCGTATAATAGCGTAAACGTCAATAAAAAATGACTGATTTTCACGAACGACAAAAGAGGAAAGC----ACAA-------AC-TTTG-----G-TTCA-----AGTCGATATTTTGA--ATAAACAAAGCAAATATAAGTTT--C--CTT-TTTAAAATGCTCTAGCCTTTC-TTTTATTAATATAAATAATTCCGAATCGAGCGTCATTCTGAAATCGTGGTAGTGTGACCACAATTTCAA-TTTT-CC-C-TGCATTTT-TCC-CCAAAT-AA-TGACGGTC--ATATTTATCGTCG--CTTGGGACGCTGAAGGGGGAT---CTT-TT-ATCGTTGCTATACT----AAT----GCGCAG-AACTA--CTGCAT
gi|20 : tcATGCCTTTTTGATATCATAAA-CCAA-------------------TCAAACA-ATGATCCTAGTTGTT--ATGTTAGTTGCAACAAAAGTCTT-----TATAATGT-----AGC-------TAGGAACAT-AAAATCATAAAAAACAAAAAAA--TGAAAGACAGATGCAATTTATTTTA
gi|22 : TTTTGTCAGACTATAATAT-------ACAGACTTATCATTGAGCTCAGTCAT---------A----CAGATCTGAAGA----CAGATAAAAG--AAAT--TTGTT----ATAA
gi|23 : AAAC----TGGGGGGC--ATATTAATCGTCA--CTTGGGATGCTGAAGGGGACTC--TTT-TT-ACCATTGCTATACT----AAT----Gaaat
gi|3 : tatcctat----CAGATCTAAAGA----CAGATAAAAA------------T----ATG-T----A----T-------T-T-TTTT-AATTCAAATA--------------TGGTTATTTTCT--AATTTTTAGTTGACGATGACACAGCTGTATACAG-TTTTGATTC-T-TG--T-T--TTTATTGTATACC-----------ATAAA-CCAACACATTCATGAATGACCTATCAAACACGTGATCATAGCTGCT--ATGTTAGTAGCAACAAA-GTCTTCC--ATGTAATGT-----AGC-------TACGAACAT-AAAATCATATGAAACAAAA-TATTTGAAAGATGGATGCAATTTATTTTATAATAAACCAAACAACATGTGGTTGATAGATAGGAAGAAAGAAACGAAAA---A-ACTATATAGTA-TAAC-ACGGGTTGCCTCTGAACAAGTGGTGTCTAATAT-TTGATATCTTCATCGCTATAGATAATACTTTAAATGTGGCAGGCATACTAGAAGTTCTGATTTTATAGCAAATG-------TATAATAA-AAG---AAAATAAAAAACAACATTCCTATAATAGCGTCAACGTCAATAAAAATC--CTGATTTTCGAGAACGACGAAAGAGGTGAGA----ACAA-------AC-ATTG-----GCTTTA-----AGT
gi|3 : AGTTTTTC-TGTTATTAATATAAATAATTCCAAATCGAACGTCAATCTGAAATCGCAGTATTGAGACCACAATGTCAA-TTTTCCC-C-TGCA-TTT-TACACAAAAC-----------------TTTATTGCCG--CTTTGTACGCT-AAAGGGACTATATTT-TT-ATCGTTGTTATACT----AAT----Gttttctgttattaatataaataattccaaatcgaacgtcaatctgaaatcgcagtattgagaccacaatgtcaattttcccctgcattttacacaaaactttattgccgctttgtacgctaaagggactatatttttatcgttgttatactaatgt
gi|4 : cagatctaaagacagataaaaatatgtatttttttaattcaaatatggttattttctaatttttagttgacgatgacacagctgtatacagttttgattcttgtttttattgtataccataaaccaacacattcatgaatgacctatcaaacacgtgatcatagctgctatgttagtagcaacaaagtcttccatgtaatgtagctacgaacataaaatcatatgaaacaaaatatttgaaagatggatgcaatttattttataataaaccaaacaacatgtggttgatagataggaagaaagaaacgaaaaaactatatagtataacacgggttgcctctgaacaagtggtgtctaatatttgatatcttcatcgctatagataatactttaaatgtggcaggcatactagaagttctgattttatagcaaatgtataataaaagaaaataaaaaacaacattcctataatagcgtcaacgtcaataaaaatcctgattttcgagaacgacgaaagaggtgagaacaaacattggctttaCAAAAGTCTTCC--ACATAATGT-----AGC-------TACGAGCAT-AAAATCATATCAAAC-GAAGTATTTGAAAGACAGATGCAATTTATTTTATAATAATTCAAACAACt
gi|4 : AACGAACA---A-ACAACATAGTATT-AT-ATGGGTTGGC-------------TCCCTTTTAC-A-----TTTgaacaaacaacatagtattatatgggttggctcccttttacatttgagacgacccccatataatgtattcctgaccaaatcgcatgaacacgacaaaaaatcgaacaagtggtgttaaaaaatgtaatattttgtaaatgtataaaaataaggaaaaaaaccattcgtttaaaagcgtaaacgtcaataaaaatgacatattttcacgaatggtgaaagagaaaggtacagcgtttacctatcgataattgaataaacaaagcaaatatacatcatttttaaagtattccagccttttgttttattgatataaataattccgaatcgaacgacaatctgaattcgtggtattgagcccacaatttctattttcctctgcattttatcaaaacaaatggcggccatataaatcgtagcttgggaggcttcaggggactattttactaac
gi|4 : caaaagtcttccacataatgtagctacgagcataaaatcatatcaaacgaagtatttgaaagacagatgcaatttattttataataattcaaacATTTT---GTAAATG-------TATAAAAATAAG---GA---AAAAAAC--CATTCGTTTAAAAGCGTAAACGTCAATAAAAA-TGACATATTTTCACGAATGGTGAAAGAGAAAGGT----ACAG-------CG-TTTA-----C-CT--------ATCGATAATT-GA--ATAAACAAAGCAAATATA----CATC--ATT-TTTAAAGTATTCCAGCCTTTTGTTTTATTGATATAAATAATTCCGAATCGAACGACAATCTGAATTCGTGGTATTGAGCCCACAATTTCTA-TTTT-CCTC-TGCA-TTT-TAT-CAAAACAAA-TGGCGGCC--ATATAAATCGTAG--CTTGGGAGGCTTCAGGGGACT---ATT-TT-ACgagacgacccccatataatgtattcctgaccaaatcgcatgaacacgacaaaaaatcgaacaagtggtgttaaaaaatgtaatattttgtaaatgtataaaaataaggaaaaaaaccattcgtttaaaagcgtaaacgtcaataaaaatgacatattttcacgaatggtgaaagagaaaggtacagcgtttacctatcgataattgaataaacaaagcaaatatacatcatttttaaagtattccagccttttgttttattgatataaataattccgaatcgaacgacaatctgaattcgtggtattgagcccacaatttctattttcctctgcattttatcaaaacaaatggcggccatataaatcgtagcttgggaggcttcaggggactattttactaac
gi|5 : caaaagtcttccacataatgtagctacgagcataaaatcatatcaaacgaagtatttgaaagacagatgcaatttattttataataattcaaacaacgaacaaacaacatagtattatatgggttggctcccttttacatttgagacgacccccatataatgtattcctgaccaaatcgcatgaacacgacaaaaaatcgaacaagtggtgttaaaaaatgtaatAATAT-ATATCGGCAAAATGGATTTACCAATGAGCTCA----T---------A----AATATAGAAAGAAAGGCAGATAGAAAGTAATT--TTATT----ATAACGATAA----TTAAAATAT-TGTTTT-AATTCAAATAGATGATGTCCT--ATGGATATTTTCT--AATATTTAGTTGACGATGACATGATTGTATAAAG-TTTTGTGTC-T-T---T-T--TTTAGTGTATGCCTTTTTGATATCATAAA-CCAAAACATTG----ATGACCCATCAA--GCA-------------T--ATG---------ACAAAAGTCTTCCATATATAATGT-----AGC-------CACGAGCAT-AAAG-CATATAAAAC-AAAATATTTGGAAGACAGATGAAATTTATTTTATAATAAACTAAACAACGTGTGGTTAATAG-----AAAAAAAAAACGAAGA---A-ACAACAC-GT-----------GTTGCC-------------TCTCTTCTAC-G-----TTTtaac
gi|6 : aacATTTCTTGTCACAATATGATAT-------ACGGATTTACCAATGAGCTCA----TGACATGAATA----CAGATCAAAAGA----CAGTTGGAAA--AAAAAATTATT----ATAATG---A----TGAAATTTT-T-TTTT-AATTCAAATAGATGATG--ATCAATGGATA---------ATTTTTAGTTGGTGATGACATAACTGTATAAAG-TTTT-----------------TTTATTGTATGCCTCTTTGATATCATAAA-CCAACACATTGATGA----TCCATCAGAAGCATTATCATAGATGCT--ATGTTAATTGCAACAGAAGTCTTCC--ATATAACGT-----AGT-------TACGACCAT-AAAATCTTATAAAAC-CAAATATTTGAAAGACAGATGAAATACACTTTATAACAAACCAAACAACCTGTGGTTGATAGAT----AGAAAGAAATTAACA---A-ACATCATAGTA-TAAC-ATGGGTTGTC-------------TCACTTATTC-T-----TTTgaaacgaccccatataatgtctctctgatcaaatcgcgtgaacgtggcgttaaaaaat
gi|7 : GTCAGAAAATGATAT-------ACGGATTTACCAATGAGCTCA----TGAAT-----A----TAGATAGAAAGA----CAGATAAAAA--AAAT--T-GTTG---ATAAT----------GGATATAT-T-TTTT-AATTCAAATAGATGATGATCT--ATGGATA---------ATTTTTAGTCGGTGATGACATAATTGTATACAG-TTTTGTTTC-T-TCTGT-T--TTTATTGTATGCCTTTTTGATAACATAAA-CCAACACATTGATGA----CCCATCAAACACATGATTATAGTTGTT--ATGTAAGTTGCAACAAAAGTCTTCC--ATATAATGT-----AGT-------TACGACCAT-TAAATTAAATAAAAC-AAAATATTTGAAAGACAGATGAAATTTATTATATAATAAATCAAACAACCTGTGGTTTATATACAGAAAGAAAGAAGCGAACA---A-ACAACAGAGTA-TAAC---GGGTTGCC-------------TCATTTGTAC-T-----TTTgagacgacccccat
gi|8 : TGAGATTGTGGTATTGAGACCACAATTTCAAATTTT-CC-T-TGCATTTTATAC-CAAAAA-TA-TGGTGGCC--ATATTAATCGTCA--CTTTGAACGCTAAAGGGGACTA--TTT-TT-ACCGTTGCTATACT----AAT----GAGCAgagatgacccaca
gi|9 : TGCTAAAAGTTCTGATTTTATAGCACATGACTATTATATAAAAA-AAGAAAGA---AAAAAAC-ACATTCTTATAATAGCGTAAACTTCAATAAAAAATGACCGATTTTCACAAATGGC-----ACATTGGCCTTTACAG-------A---TTGACGA-G-TTTA-----TATCGATATTTTGA--ATAAACAAAGCAAATATA----CTAC--CTT-TTAAAAGTATTCCAGCCTTTC-TTTTATTAATATAAAGAATTCTGAATCGATCATCATTCTGAAATCGTGGTATnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaaaacatggtcaacagaacaacaaagagtatagaacaaaattgtaatataggccgcacaatccctatagaaggcattcacatt
gi|9 : -AA-TCGTGGT---ATATTAATCGTTG--CTTGGGATGCTGAAGGGGACT---ATTCTT-ACCGTTGCTATACT----AAT----GCATAGTAGTTGT-CTGCATattaatcgttgcttgggatgctgaaggggactattcttaccgttgctatactaatgcatagtagttgtctgcatttaatgtcattttaatgttttgctctctgtttgatagaacaaaaattgcaat
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|15 ): TAGAAACAATGAGCCGAACAAACAACAGTAATTGGTTTTAACACGAGAAGACGACCCCTGTTATGTAACTGGCCAATCAGCATCAAGTGTAGTCACAGCAAATAATTACAATATCAAGGACAGGTGGTGTTAAAAATTTAATATTTCCATCATTGATAATGTCTACATGCGTGCTGCAGTTATAATTTAAGAACTGATCTAATAATAGATAAACGAATTATATTGCATAACAGTGTAAACTTAA
Unaligned ( gi|21 ): ATTATATAGCTGACCAATCATTGACAAGTGTGATTTTCACCACCACAAAGAATTGCAATAACTAGGACATGTGGTCTATTTTTCATCATTATTATATTAAAATCTCAACATGTGTGTTGAAGGACTGATTAAATA
Alignments
lowQualScore : 1111111 55555555555555 4444444444444444444444444444444444 222222 555555555 111111 1111111 111 222 22222222222222 1111111 2222222 333333333333 11 111 2222 555555555555555555555555555555 11 4444444444 1111 1111 1111 1111 1 22
lowQualScore : 3333333 44444444444444 88888 7777 6666666666666666666666666666666666 3 3 6 666666 666666666 0 0 3 1 9999999 3 44 3 0 111111 44 88 44 77777 0000000 0 3 8 7 1 2 11 111 1 777 555 55555555555555 2 4444444 11 11 6666666 444444444444 33 3 2 000 2 1 0 88 1 8888 888888888888888888888888888888 0 11 0 6666666666 8 22 3 6 22 6 6 888 7 6 6 3333 3 8888 66 2 3 9999 5 5 3 2222 2222 0 1 00
lowQualScore : ....... .............. ..... .... .................................. . . . ...... ......... . . . . ....... . .. . . ...... .. .. .. ..... ....... . . . . . . .. ... . ... ... .............. . ....... .. .. ....... ............ .. . . ... . . . .. . .... .............................. . .. . .......... . .. . . .. . . ... . . . .... . .... .. . . .... . . . .... .... . . ..
lowQualScore : 0000000 99999999999999 33333 1111 4444444444444444444444444444444444 3 3 7 888888 444444444 1 4 3 8 0000000 1 22 3 4 999999 66 00 22 77777 0000000 2 3 8 9 4 5 99 777 1 888 888 44444444444444 3 0000000 88 66 0000000 111111111111 00 2 5 888 5 0 7 88 0 3333 777777777777777777777777777777 8 00 8 4444444444 0 00 2 7 88 7 7 777 3 7 7 5555 4 5555 99 5 4 8888 0 0 4 1111 1111 0 0 77
consensus : NNAATTTCTTGTCAGAATATGATAT-------ACGGATTTACCAATGAGCTCA----T---------A----CAGATCGAAAGA----CAGATAGAAA--AATT--TTGTT----ATAAT----A----TGAAAATAT-T-TTTT-AATTCAAATAGATGATG--CT--ATGGATATTTT-T--AATTTTTAGTTGGTGATGACATAACTGTATACAG-TTTTGTTTC-T-T---T-T--TTTATTGTATGCCTTTTTGATATCATAAA-CCAACACATTGATGAATGACCCATCAAACGCATGATCATAGTTGTT--ATGTTAGTTGCAACAAAAGTCTTCC--ATATAATGT-----AGC-------TACGAGCAT-AAAATCATATAAAACAAAAATATTTGAAAGACAGATGCAATTTATTTTATAATAAACCAAACAACCTGTGGTTGATAGATAGAAAGAAAGAAACGAACA---AACAACATAGTATAAC-ACGGGTTGCCTC-------------NCTTGTAC-T-----TTTTCGTCGTTATAGATAATACTTTAAATGTGGCAGGCATACTAGAAGTTCTGATTTTATAGCAAATG-------TATAAAAA-AAG---GA---AAAAAAC-GCATTCGTATAATAGCGTAAACGTCAATAAAAAACGACTGATTTTCACGAACGACGAAAGAGANAGGC----ACAG-------AC-TTTG-----G-TTCA-----AATCGATATTTTGA--ATAAACAAAGCAAATATA----C--C--CTT-TTTAAAGTATTCCAGCCTTTC-TTTTATTAATATAAATAATTCCGAATCGAACGTCAATCTGAAATCGTGGTATTGAGACCACAATTTCAA-TTTT-CC-C-TGCATTTT-TAC-CAAAAC-AA-TGGCGGCC--ATATTAATCGTCG--CTTGGGACGCTGAAGGGGACT---NTT-TT-ACCGTTGCTATACT----AAT----GCGCAG-AGNTAT-CTGCAT
Reference ( family-157 ) : NNAATTTCTTGTCAGAATATGATAT-------ACGGATTTACCAATGAGCTCA----T---------A----CAGATCGAAAGA----CAGATAGAAA--AATT--TTGTT----ATAAT----A----TGAAAATAT-T-TTTT-AATTCAAATAGATGATG--CT--ATGGATATTTT-T--AATTTTTAGTTGGTGATGACATAACTGTATACAG-TTTTGTTTC-T-T---T-T--TTTATTGTATGCCTTTTTGATATCATAAA-CCAACACATTGATGAATGACCCATCAAACGCATGATCATAGTTGTT--ATGTTAGTTGCAACAAAAGTCTTCC--ATATAATGT-----AGC-------TACGAGCAT-AAAATCATATAAAACAAAAATATTTGAAAGACAGATGCAATTTATTTTATAATAAACCAAACAACCTGTGGTTGATAGATAGAAAGAAAGAAACGAACA---AACAACATAGTATAAC-A-GGGTTGCCTC-------------NCTTGTAC-T-----TTTTCGTCGTTATAGATAATACTTTAAATGTGGCAGGCATACTAGAAGTTCTGATTTTATAGCAAATG-------TATAAAAA-AAG---GA---AAAAAAC-GCATTCGTATAATAGCGTAAACGTCAATAAAAAACGACTGATTTTCACGAACGACGAAAGAGANAGGC----ACAG-------AC-TTTG-----G-TTCA-----AATCGATATTTTGA--ATAAACAAAGCAAATATA----C--C--CTT-TTTAAAGTATTCCAGCCTTTC-TTTTATTAATATAAATAATTCCGAATCGAACGTCAATCTGAAATCGTGGTATTGAGACCACAATTTCAA-TTTT-CC-C-TGCATTTT-TAC-CAAAAC-AA-TGGCGGCC--ATATTAATCGTCG--CTTGGGACGCTGAAGGGGACT---NTT-TT-ACCGTTGCTATACT----AAT----GCGCAG-AGNTAT-CTGCAT
gi|1 : AATTTCTTGTCAGAATATGATAA-------AGAGATTTATCAATGAGCTCA----TGAATGAAT-A----CAGACCGAAAGA----CAGTTAGATA--T-TT--TTGTT----ACAAT----AA---TGAAAATAT-T-TTTTTAATTAAAATAGATGATGGTCT--ATGGATATTTT-TTTAATTTT-AGTTGATAATGTCATAACTGTATAAAG-TTC-GTTTC-T-T---T-TTTTTTATTGTATGCCTTTTTGATATCATACA-CCAACACATTG----ATGACCCATCAAGCATATGATCATAGTTGTA--ATGT------------AAGTCTTCC--ATATAATGT-----AGC-------TACGAGCAC-AAAACCATATTAAACAA----ATT----------ATGCAGATTATTTTACAATAAACCAAACAA----------AT---TAGAAAGAAAGAAACGAACA---AACATC--AGTATAAC-ACGGATTGGCTA-------------CCTTCTAT-T-----TTT
gi|1 : tTTGTATGT-----TTTTTGTCGTTATAGATAATTCTTTAAATATGGCAGGCATAATAGAAGTTCTGGTTTAAAAATAATTG-------TATAAAAA-A----------------T-ACATTCGTATAATAGAGTAAACGT----AAAAAATGACTGATTTTCATGAATGA----AGAGAAAAGC----ACAGCGCTG--GCATTTGCGCGAG-TTCA-----AATCGATATTTTTTTTATAAACAAAGCAAGTATA----T--CAACTTATTTTAAGTATTCAAGCCATTC-TTTTAGTAGTACAAATAATTCCGAATTAAAA---AAACTGAAATCGTGATAATGAGCCCACAATTTCAA-TTTT-TC-CGTGTATTTT--AC-CAAAAC-AAATGGCGGCC--ATATGAATCGTCG--CTTGGGACGTTGAAGGATACT---ATT-TT-A--------A---T----AAT----GCGCAG-gagactacccatataatgcgtatctgaccaaatcacgtgaacaccgtaaaaaatcgaacaagtggtgttaaaaatctaatattttgtatgttttttgtcgttatagataattctttaaatatggcaggcataatagaagttctggtttaaaaataattgtataaaaaatacattcgtataatagagtaaacgtaaaaaatgactgattttcatgaatgaagagaaaagcacagcgctggcatttgcgcgagttcaaatcgatattttttttataaacaaagcaagtatatcaacttattttaagtattcaagccattcttttagtagtacaaataattccgaattaaaaaaactgaaatcgtgataatgagcccacaatttcaatttttccgtgtattttaccaaaacaaatggcggccatatgaatcgtcgcttgggacgttgaaggatactattttaataatgcgcagtagtagtg
gi|10 : taatttcttgtcagaatatgataaagagatttatcaatgagctcatgaatgaatacagaccgaaagacagttagatatttttgttacaataatgaaaatatttttttaattaaaatagatgatggtctatggatatttttttaattttagttgataatgtcataactgtataaagttcgtttctttttttttattgtatgcctttttgatatcatacaccaacacattgatgacccatcaagcatatgatcatagttgtaatgtaagtcttccatataatgtagctacgagcacaaaaccatattaaacaaattatgcagattattttacaataaaccaaacaaattagaaagaaagaaacgaacaaacatcagtataacacggattggctaccttctatttttgagactacccatataatgcgtatctgaccaaatcacgtgaacaccgtaaaaaatcgaacaagtggtgttaaaaatctaatatt---AGAACAC-GCATTTGTACA---GAGT-----TAAATAATATAC-ACT--TTTTTAAGAATTACAAAGGAGACAGGCCAGCGCAGGCATGATAC-TTTG-----T-GTCAGTAAAAATCGACTTTTTGA--GTAAA-ATGGTGAATA-A----C---------------ATATT--------TC-TCTTATTCATCAGAATACTTCCGAATCGAACGCCAAT-TGGAACCCTGGTATCAAGACGAAAACTTCAA-ACTT-CT-T-TGCATTGT-TTC-GCAAGT-AA-CGGAGGCTAAACAGTATTTTTTGAAATT-GGATGCCAAAGCGAACA---ATT-TTAAATTTTGCTATACTACAAAATTTAGGCGCAG-GGAAATCCTGCtagtagtg
gi|11 : GTTTC-TCT---T-T--TTTACTGTATGTCTTTTTGATATCACAAT-CCAACACATTCATGAATGACCTATCAAACACATGATCATAGTTGTT--ATGTTAGTTGCAAC--AAGTGTTCG--ATATAATAT-----AGCTATATAATATGAGCGT-AAATTTATATAAAAC-AAAATATTTGAAAGACAAATGCA----ATTTTATAATAACCCAAACAACCTGTGGT
gi|12 : tactatgaaaccatattaaaatataccaaaaagtcattttcatccaaaatgttgtttggtaccttctggcattaacccagcgatatgAATTTCTTGTCAAAATATGATAT-------ACGGATTTAACAATGAGTTAA----T---------AAATACAGATCGAAAGA----CAGATAGAAA--AAAA--CTGTT----AAAAT----A------AAAATAT-T-TTTT-TATTCAAATAGATGAC---CT--ATGCATA---------ATTTTTAGTTGGTGATGATATAATTGTATACAGTTTTTGTTTC---T---T-T--TTTATTGTATGCCTTTTTGATAT-----------TACATTG----ATGACCCATCAAACGCATAATAATAGTTTCT--ATGTTAGTTGCAACAGAAGTATTCC--TTAAAATGT-------C-------CA-AAG-AC-AAAAACATAcatacatgtgatgg
gi|13 : TT----ATAAG----AA---TGAAAATAT-T-TTTT-AATTCAAATAGATGATG--CTTTATGGATA---------ATTTTTAGTTGGTGATGACATAATTGTATACAG-ATTTGTTTC-G-T---T-T--Tacg
gi|13 : ttTTGGTGA-TGAC--AT-AATTGTATA--CAGATTTGTTTCGTTTTAGTTGCAACTGAAGTCTTCC--ATATAATGT-----TGT-------TATGACCAT-AAAATAATATAAA--AAAAATATTTGAAAGACAGTTGGAATTTATTTTATAAT-AACCAAACAACCTGTGGTTGATAGAT----AGAAGGAAACAAACA---AACAATGTAATATAACAA-GGGTTGCATC-------------ACATATAC-T-----Tagttgcaactgaagtcttccatataatgttgttatgaccataaaataatataaaaaaaatatttgaaagacagttggaatttattttataataaccaaacaacctgtggttgatagatagaaggaaacaaacaaacaatgtaatataacaagggttgcatcacatatacttcacttga
gi|14 : ttttataagaatgaaaatattttttaattcaaatagatgatgctttatggataatttttagAATTTCTAATCAGAATATGATAT-------ACGGATTTACCAATGAGCTCA----C---------A-----AGATCTAATGA-----------------ATT--TT-----------------------------T-T-TTTT-AATTCAAATAGAT------CT--ATGGATATTTTCT--AATTCTTTGTTG-----GACGT----------GG-TTTTGATTC-TGT---TGT--TTTTTTGTATATCTTTTTGATATCATAAACCCAACACATTCATGAATGACATGTCAAGCACATGATCATAGTGGTT--GTGTTAGTTGCAAC--AAGTCCTTT--GTGTAGTGT-----AGC-------CACGAGcacttga
gi|16 : AAATTCTTGTCACAATATGATAT-------ACGGATTTACCAATGAGCTCA----TTGAAT----A----CAGATTGAAAGA----CAGATAG----------------------------------TGGAAATATCT-TTTT-AATTCAAAAAGATGATG---------GATA---------ATTTTTATTTTGTGATGACATAACTGTATACAG-TTTTGTTTCTT-T---T-T--TTTATTGTATGCC--TTTGATATCATAAA-TC-ATACA---ATG-ATGATCCAC---ACGCATGATCATAGTTGCT--ATGTTGGTTGCAAT--AAGTCTTCC--At
gi|17 : AATGTTATTAAGT-------TACGACCATTAAAATCATATAAAACAAAA-TATTTGAAAGACAAATGAATTTTATTTGATAATAAACCAAAAAACCTGTGGTTGATAGATAGAACGAAAGAAACGAACATTTAACAACATAGTATAAC-ATGGACTGCTTT-------------ACTTGTAA-T-----TTT
gi|18 : GAAAAA----CAGATAGAA-----TT--TTTTTTATCATAAT----AG---CGAAAATAT-T-TTTT-AATACAAATAGATGGTGATCT--ATGGA-------T--AATTTTTAGTTGGTGATGACAACATTGTA--------TTCCCTT-T-T---T-T--TTTATTGTACGCCTTTTTGAC-CCAT----CAAACACA-TGATgagacca
gi|19 : tAATTTCTTGTCAAAATA--------------CGTATTTACC------TTTA--------------A----AAGCTTGAAAGA----CAGATAGAA-----TT--TTTTT----ATCAT----AAAAGCGAAAACAT-T-TTTTTAAAACAAACAGATAATGATCT--ATGGATA---------ATTTTTAGTTGGTGATGACATAATTGTATTCAC-TT--------T-T---T-T--TTTATTGTAcatagttgctatgtatg
gi|2 : tAATTTTTTGTCAGAATATGATAT-------ACATATTTACCAATGAGCTCA----T---------A----CAGATCTAAAGA----CAGATAGAAAGAAATT--TTGTT----ATAAT----A----TGAAAATAT-T-TCTT-AATTCAAATA----ATA--TT--ATGTATATTTTCT--ATTTTTTACTTTGTGATGACATGACTGTATACAG-TTTTGATTC-T-T---T-T--TTTATTGTATTCCTTTTTGATATCACAAA-TCAACACATTCATGAATGGCCCGTCAAACACATAATCATAGTTGTT--GTGTTAGCTGCCACAAACGTCTTCC--ATATAATGT-----AGA-------TACGAGCAT-AAAGTCATATTAAACAAAAATATTTGAACAACACATGCAATTTATTTTATAATAAACCAAACAACCTGTGATTGATAAATAGAAAGAAAGAAACGAG-A---AACAACATGGTGTTAA-A-AAACTGTTTA-------------TTTTGTATGT-----TTTTCGGCGTTATAGATAATACTTTAAATGTGGTTGGTTTACTAGAAGTTTTGATTTTATATCACCTG-------TATAAAAA-------GA---AAAAAAT-GCATTCGTATAATAGCGTAAACGTCAATAAAAAATGACTGATTTTCACGAACGACAAAAGAGGAAAGC----ACAA-------AC-TTTG-----G-TTCA-----AGTCGATATTTTGA--ATAAACAAAGCAAATATAAGTTT--C--CTT-TTTAAAATGCTCTAGCCTTTC-TTTTATTAATATAAATAATTCCGAATCGAGCGTCATTCTGAAATCGTGGTAGTGTGACCACAATTTCAA-TTTT-CC-C-TGCATTTT-TCC-CCAAAT-AA-TGACGGTC--ATATTTATCGTCG--CTTGGGACGCTGAAGGGGGAT---CTT-TT-ATCGTTGCTATACT----AAT----GCGCAG-AACTA--CTGCAT
gi|20 : tcATGCCTTTTTGATATCATAAA-CCAA-------------------TCAAACA-ATGATCCTAGTTGTT--ATGTTAGTTGCAACAAAAGTCTT-----TATAATGT-----AGC-------TAGGAACAT-AAAATCATAAAAAACAAAAAAA--TGAAAGACAGATGCAATTTATTTTA
gi|22 : TTTTGTCAGACTATAATAT-------ACAGACTTATCATTGAGCTCAGTCAT---------A----CAGATCTGAAGA----CAGATAAAAG--AAAT--TTGTT----ATAA
gi|23 : AAAC----TGGGGGGC--ATATTAATCGTCA--CTTGGGATGCTGAAGGGGACTC--TTT-TT-ACCATTGCTATACT----AAT----Gaaat
gi|3 : tatcctat----CAGATCTAAAGA----CAGATAAAAA------------T----ATG-T----A----T-------T-T-TTTT-AATTCAAATA--------------TGGTTATTTTCT--AATTTTTAGTTGACGATGACACAGCTGTATACAG-TTTTGATTC-T-TG--T-T--TTTATTGTATACC-----------ATAAA-CCAACACATTCATGAATGACCTATCAAACACGTGATCATAGCTGCT--ATGTTAGTAGCAACAAA-GTCTTCC--ATGTAATGT-----AGC-------TACGAACAT-AAAATCATATGAAACAAAA-TATTTGAAAGATGGATGCAATTTATTTTATAATAAACCAAACAACATGTGGTTGATAGATAGGAAGAAAGAAACGAAAA---AACTATATAGTATAAC-ACGGGTTGCCTCTGAACAAGTGGTGTCTAATAT-TTGATATCTTCATCGCTATAGATAATACTTTAAATGTGGCAGGCATACTAGAAGTTCTGATTTTATAGCAAATG-------TATAATAA-AAG---AAAATAAAAAACAACATTCCTATAATAGCGTCAACGTCAATAAAAATC--CTGATTTTCGAGAACGACGAAAGAGGTGAGA----ACAA-------AC-ATTG-----GCTTTA-----AGT
gi|3 : AGTTTTTC-TGTTATTAATATAAATAATTCCAAATCGAACGTCAATCTGAAATCGCAGTATTGAGACCACAATGTCAA-TTTTCCC-C-TGCA-TTT-TACACAAAAC-----------------TTTATTGCCG--CTTTGTACGCT-AAAGGGACTATATTT-TT-ATCGTTGTTATACT----AAT----Gttttctgttattaatataaataattccaaatcgaacgtcaatctgaaatcgcagtattgagaccacaatgtcaattttcccctgcattttacacaaaactttattgccgctttgtacgctaaagggactatatttttatcgttgttatactaatgt
gi|4 : cagatctaaagacagataaaaatatgtatttttttaattcaaatatggttattttctaatttttagttgacgatgacacagctgtatacagttttgattcttgtttttattgtataccataaaccaacacattcatgaatgacctatcaaacacgtgatcatagctgctatgttagtagcaacaaagtcttccatgtaatgtagctacgaacataaaatcatatgaaacaaaatatttgaaagatggatgcaatttattttataataaaccaaacaacatgtggttgatagataggaagaaagaaacgaaaaaactatatagtataacacgggttgcctctgaacaagtggtgtctaatatttgatatcttcatcgctatagataatactttaaatgtggcaggcatactagaagttctgattttatagcaaatgtataataaaagaaaataaaaaacaacattcctataatagcgtcaacgtcaataaaaatcctgattttcgagaacgacgaaagaggtgagaacaaacattggctttaCAAAAGTCTTCC--ACATAATGT-----AGC-------TACGAGCAT-AAAATCATATCAAAC-GAAGTATTTGAAAGACAGATGCAATTTATTTTATAATAATTCAAACAAC--------GA-----------------ACAAAC-------AACATAGTATTAT-ATGGGTTGGCTC-------------CCTTTTAC-A-----TTTt
gi|4 : ATTTT---GTAAATG-------TATAAAAATAAG---GA---AAAAAAC--CATTCGTTTAAAAGCGTAAACGTCAATAAAAA-TGACATATTTTCACGAATGGTGAAAGAGAAAGGT----ACAG-------CG-TTTA-----C-CT--------ATCGATAATT-GA--ATAAACAAAGCAAATATA----CATC--ATT-TTTAAAGTATTCCAGCCTTTTGTTTTATTGATATAAATAATTCCGAATCGAACGACAATCTGAATTCGTGGTATTGAGCCCACAATTTCTA-TTTT-CCTC-TGCA-TTT-TAT-CAAAACAAA-TGGCGGCC--ATATAAATCGTAG--CTTGGGAGGCTTCAGGGGACT---ATT-TT-ACgagacgacccccatataatgtattcctgaccaaatcgcatgaacacgacaaaaaatcgaacaagtggtgttaaaaaatgtaatattttgtaaatgtataaaaataaggaaaaaaaccattcgtttaaaagcgtaaacgtcaataaaaatgacatattttcacgaatggtgaaagagaaaggtacagcgtttacctatcgataattgaataaacaaagcaaatatacatcatttttaaagtattccagccttttgttttattgatataaataattccgaatcgaacgacaatctgaattcgtggtattgagcccacaatttctattttcctctgcattttatcaaaacaaatggcggccatataaatcgtagcttgggaggcttcaggggactattttactaac
gi|5 : caaaagtcttccacataatgtagctacgagcataaaatcatatcaaacgaagtatttgaaagacagatgcaatttattttataataattcaaacaacgaacaaacaacatagtattatatgggttggctcccttttacatttgagacgacccccatataatgtattcctgaccaaatcgcatgaacacgacaaaaaatcgaacaagtggtgttaaaaaatgtaatAATAT-ATATCGGCAAAATGGATTTACCAATGAGCTCA----T---------A----AATATAGAAAGAAAGGCAGATAGAAAGTAATT--TTATT----ATAACGATAA----TTAAAATAT-TGTTTT-AATTCAAATAGATGATGTCCT--ATGGATATTTTCT--AATATTTAGTTGACGATGACATGATTGTATAAAG-TTTTGTGTC-T-T---T-T--TTTAGTGTATGCCTTTTTGATATCATAAA-CCAAAACATTG----ATGACCCATCAA--GCA-------------T--ATG---------ACAAAAGTCTTCCATATATAATGT-----AGC-------CACGAGCAT-AAAG-CATATAAAAC-AAAATATTTGGAAGACAGATGAAATTTATTTTATAATAAACTAAACAACGTGTGGTTAATAG-----AAAAAAAAAACGAAGA---AACAACAC-GT----------GTTGCCTC-------------TCTTCTAC-G-----TTTtaac
gi|6 : aacATTTCTTGTCACAATATGATAT-------ACGGATTTACCAATGAGCTCA----TGACATGAATA----CAGATCAAAAGA----CAGTTGGAAA--AAAAAATTATT----ATAATG---A----TGAAATTTT-T-TTTT-AATTCAAATAGATGATG--ATCAATGGATA---------ATTTTTAGTTGGTGATGACATAACTGTATAAAG-TTTT-----------------TTTATTGTATGCCTCTTTGATATCATAAA-CCAACACATTGATGA----TCCATCAGAAGCATTATCATAGATGCT--ATGTTAATTGCAACAGAAGTCTTCC--ATATAACGT-----AGT-------TACGACCAT-AAAATCTTATAAAAC-CAAATATTTGAAAGACAGATGAAATACACTTTATAACAAACCAAACAACCTGTGGTTGATAGAT----AGAAAGAAATTAACA---AACATCATAGTATAAC-ATGGGTTGTCTC-------------ACTTATTC-T-----TTTgaaacgaccccatataatgtctctctgatcaaatcgcgtgaacgtggcgttaaaaaat
gi|7 : GTCAGAAAATGATAT-------ACGGATTTACCAATGAGCTCA----TGAAT-----A----TAGATAGAAAGA----CAGATAAAAA--AAAT--T-GTTG---ATAAT----------GGATATAT-T-TTTT-AATTCAAATAGATGATGATCT--ATGGATA---------ATTTTTAGTCGGTGATGACATAATTGTATACAG-TTTTGTTTC-T-TCTGT-T--TTTATTGTATGCCTTTTTGATAACATAAA-CCAACACATTGATGA----CCCATCAAACACATGATTATAGTTGTT--ATGTAAGTTGCAACAAAAGTCTTCC--ATATAATGT-----AGT-------TACGACCAT-TAAATTAAATAAAACAAAA-TATTTGAAAGACAGATGAAATTTATTATATAATAAATCAAACAACCTGTGGTTTATATACAGAAAGAAAGAAGCGAACA---AACAACAGAGTATAAC---GGGTTGCCTC-------------ATTTGTAC-T-----TTTgagacgacccccat
gi|8 : TGAGATTGTGGTATTGAGACCACAATTTCAAATTTT-CC-T-TGCATTTTATAC-CAAAAA-TA-TGGTGGCC--ATATTAATCGTCA--CTTTGAACGCTAAAGGGGACTA--TTT-TT-ACCGTTGCTATACT----AAT----GAGCAgagatgacccaca
gi|9 : TGCTAAAAGTTCTGATTTTATAGCACATGACTATTATATAAAAA-AAGAAAGA---AAAAAAC-ACATTCTTATAATAGCGTAAACTTCAATAAAAAATGACCGATTTTCACAAATGGC-----ACATTGGCCTTTACAG-------A---TTGACGA-G-TTTA-----TATCGATATTTTGA--ATAAACAAAGCAAATATA----CTAC--CTT-TTAAAAGTATTCCAGCCTTTC-TTTTATTAATATAAAGAATTCTGAATCGATCATCATTCTGAAATCGTGGTATnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaaaacatggtcaacagaacaacaaagagtatagaacaaaattgtaatataggccgcacaatccctatagaaggcattcacatt
gi|9 : -AA-TCGTGGT---ATATTAATCGTTG--CTTGGGATGCTGAAGGGGACT---ATTCTT-ACCGTTGCTATACT----AAT----GCATAGTAGTTGT-CTGCATattaatcgttgcttgggatgctgaaggggactattcttaccgttgctatactaatgcatagtagttgtctgcatttaatgtcattttaatgttttgctctctgtttgatagaacaaaaattgcaat
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|15 ): TAGAAACAATGAGCCGAACAAACAACAGTAATTGGTTTTAACACGAGAAGACGACCCCTGTTATGTAACTGGCCAATCAGCATCAAGTGTAGTCACAGCAAATAATTACAATATCAAGGACAGGTGGTGTTAAAAATTTAATATTTCCATCATTGATAATGTCTACATGCGTGCTGCAGTTATAATTTAAGAACTGATCTAATAATAGATAAACGAATTATATTGCATAACAGTGTAAACTTAA
Unaligned ( gi|21 ): ATTATATAGCTGACCAATCATTGACAAGTGTGATTTTCACCACCACAAAGAATTGCAATAACTAGGACATGTGGTCTATTTTTCATCATTATTATATTAAAATCTCAACATGTGTGTTGAAGGACTGATTAAATA
Alignments
lowQualScore : 1111111 55555555555555 4444444444444444444444444444444444 222222 555555555 111111 1111111 111 22222222222222 1111111 2222222 333333333333 11 111 2222 555555555555555555555555555555 11 4444444444 1111 1111 1111 1111 1 22
lowQualScore : 3333333 44444444444444 88888 7777 6666666666666666666666666666666666 3 3 6 666666 666666666 0 0 3 1 9999999 3 44 3 0 111111 44 88 44 77777 0000000 0 3 8 7 1 2 11 111 1 777 0 777 55555555555555 2 4444444 11 11 6666666 444444444444 33 3 2 000 2 1 0 88 1 8888 888888888888888888888888888888 0 11 0 6666666666 8 22 3 6 22 6 6 888 7 6 6 3333 3 8888 66 2 3 9999 5 5 3 2222 2222 0 1 00
lowQualScore : ....... .............. ..... .... .................................. . . . ...... ......... . . . . ....... . .. . . ...... .. .. .. ..... ....... . . . . . . .. ... . ... . ... .............. . ....... .. .. ....... ............ .. . . ... . . . .. . .... .............................. . .. . .......... . .. . . .. . . ... . . . .... . .... .. . . .... . . . .... .... . . ..
lowQualScore : 0000000 99999999999999 33333 1111 4444444444444444444444444444444444 3 3 7 888888 444444444 1 4 3 8 0000000 1 22 3 4 999999 66 00 22 77777 0000000 2 3 8 9 4 5 99 777 1 888 8 888 44444444444444 3 0000000 88 66 0000000 111111111111 00 2 5 888 5 0 7 88 0 3333 777777777777777777777777777777 8 00 8 4444444444 0 00 2 7 88 7 7 777 3 7 7 5555 4 5555 99 5 4 8888 0 0 4 1111 1111 0 0 77
consensus : NNAATTTCTTGTCAGAATATGATAT-------ACGGATTTACCAATGAGCTCA----T---------A----CAGATCGAAAGA----CAGATAGAAA--AATT--TTGTT----ATAAT----A----TGAAAATAT-T-TTTT-AATTCAAATAGATGATG--CT--ATGGATATTTT-T--AATTTTTAGTTGGTGATGACATAACTGTATACAG-TTTTGTTTC-T-T---T-T--TTTATTGTATGCCTTTTTGATATCATAAA-CCAACACATTGATGAATGACCCATCAAACGCATGATCATAGTTGTT--ATGTTAGTTGCAACAAAAGTCTTCC--ATATAATGT-----AGC-------TACGAGCAT-AAAATCATATAAAACAAAAATATTTGAAAGACAGATGCAATTTATTTTATAATAAACCAAACAACCTGTGGTTGATAGATAGAAAGAAAGAAACGAACA---AACAACATAGTAT---AACACGGGTTGCCTC-------------NCTTGTAC-T-----TTTTCGTCGTTATAGATAATACTTTAAATGTGGCAGGCATACTAGAAGTTCTGATTTTATAGCAAATG-------TATAAAAA-AAG---GA---AAAAAAC-GCATTCGTATAATAGCGTAAACGTCAATAAAAAACGACTGATTTTCACGAACGACGAAAGAGANAGGC----ACAG-------AC-TTTG-----G-TTCA-----AATCGATATTTTGA--ATAAACAAAGCAAATATA----C--C--CTT-TTTAAAGTATTCCAGCCTTTC-TTTTATTAATATAAATAATTCCGAATCGAACGTCAATCTGAAATCGTGGTATTGAGACCACAATTTCAA-TTTT-CC-C-TGCATTTT-TAC-CAAAAC-AA-TGGCGGCC--ATATTAATCGTCG--CTTGGGACGCTGAAGGGGACT---NTT-TT-ACCGTTGCTATACT----AAT----GCGCAG-AGNTAT-CTGCAT
Reference ( family-157 ) : NNAATTTCTTGTCAGAATATGATAT-------ACGGATTTACCAATGAGCTCA----T---------A----CAGATCGAAAGA----CAGATAGAAA--AATT--TTGTT----ATAAT----A----TGAAAATAT-T-TTTT-AATTCAAATAGATGATG--CT--ATGGATATTTT-T--AATTTTTAGTTGGTGATGACATAACTGTATACAG-TTTTGTTTC-T-T---T-T--TTTATTGTATGCCTTTTTGATATCATAAA-CCAACACATTGATGAATGACCCATCAAACGCATGATCATAGTTGTT--ATGTTAGTTGCAACAAAAGTCTTCC--ATATAATGT-----AGC-------TACGAGCAT-AAAATCATATAAAACAAAAATATTTGAAAGACAGATGCAATTTATTTTATAATAAACCAAACAACCTGTGGTTGATAGATAGAAAGAAAGAAACGAACA---AACAACATAGTAT---AACACGGGTTGCCTC-------------NCTTGTAC-T-----TTTTCGTCGTTATAGATAATACTTTAAATGTGGCAGGCATACTAGAAGTTCTGATTTTATAGCAAATG-------TATAAAAA-AAG---GA---AAAAAAC-GCATTCGTATAATAGCGTAAACGTCAATAAAAAACGACTGATTTTCACGAACGACGAAAGAGANAGGC----ACAG-------AC-TTTG-----G-TTCA-----AATCGATATTTTGA--ATAAACAAAGCAAATATA----C--C--CTT-TTTAAAGTATTCCAGCCTTTC-TTTTATTAATATAAATAATTCCGAATCGAACGTCAATCTGAAATCGTGGTATTGAGACCACAATTTCAA-TTTT-CC-C-TGCATTTT-TAC-CAAAAC-AA-TGGCGGCC--ATATTAATCGTCG--CTTGGGACGCTGAAGGGGACT---NTT-TT-ACCGTTGCTATACT----AAT----GCGCAG-AGNTAT-CTGCAT
gi|1 : AATTTCTTGTCAGAATATGATAA-------AGAGATTTATCAATGAGCTCA----TGAATGAAT-A----CAGACCGAAAGA----CAGTTAGATA--T-TT--TTGTT----ACAAT----AA---TGAAAATAT-T-TTTTTAATTAAAATAGATGATGGTCT--ATGGATATTTT-TTTAATTTT-AGTTGATAATGTCATAACTGTATAAAG-TTC-GTTTC-T-T---T-TTTTTTATTGTATGCCTTTTTGATATCATACA-CCAACACATTG----ATGACCCATCAAGCATATGATCATAGTTGTA--ATGT------------AAGTCTTCC--ATATAATGT-----AGC-------TACGAGCAC-AAAACCATATTAAACAA----ATT----------ATGCAGATTATTTTACAATAAACCAAACAA----------AT---TAGAAAGAAAGAAACGAACA---AACATC--AGTAT---AACACGGATTGGCTA-------------CCTTCTAT-T-----TTT
gi|1 : tTTGTATGT-----TTTTTGTCGTTATAGATAATTCTTTAAATATGGCAGGCATAATAGAAGTTCTGGTTTAAAAATAATTG-------TATAAAAA-A----------------T-ACATTCGTATAATAGAGTAAACGT----AAAAAATGACTGATTTTCATGAATGA----AGAGAAAAGC----ACAGCGCTG--GCATTTGCGCGAG-TTCA-----AATCGATATTTTTTTTATAAACAAAGCAAGTATA----T--CAACTTATTTTAAGTATTCAAGCCATTC-TTTTAGTAGTACAAATAATTCCGAATTAAAA---AAACTGAAATCGTGATAATGAGCCCACAATTTCAA-TTTT-TC-CGTGTATTTT--AC-CAAAAC-AAATGGCGGCC--ATATGAATCGTCG--CTTGGGACGTTGAAGGATACT---ATT-TT-A--------A---T----AAT----GCGCAG-gagactacccatataatgcgtatctgaccaaatcacgtgaacaccgtaaaaaatcgaacaagtggtgttaaaaatctaatattttgtatgttttttgtcgttatagataattctttaaatatggcaggcataatagaagttctggtttaaaaataattgtataaaaaatacattcgtataatagagtaaacgtaaaaaatgactgattttcatgaatgaagagaaaagcacagcgctggcatttgcgcgagttcaaatcgatattttttttataaacaaagcaagtatatcaacttattttaagtattcaagccattcttttagtagtacaaataattccgaattaaaaaaactgaaatcgtgataatgagcccacaatttcaatttttccgtgtattttaccaaaacaaatggcggccatatgaatcgtcgcttgggacgttgaaggatactattttaataatgcgcagtagtagtg
gi|10 : taatttcttgtcagaatatgataaagagatttatcaatgagctcatgaatgaatacagaccgaaagacagttagatatttttgttacaataatgaaaatatttttttaattaaaatagatgatggtctatggatatttttttaattttagttgataatgtcataactgtataaagttcgtttctttttttttattgtatgcctttttgatatcatacaccaacacattgatgacccatcaagcatatgatcatagttgtaatgtaagtcttccatataatgtagctacgagcacaaaaccatattaaacaaattatgcagattattttacaataaaccaaacaaattagaaagaaagaaacgaacaaacatcagtataacacggattggctaccttctatttttgagactacccatataatgcgtatctgaccaaatcacgtgaacaccgtaaaaaatcgaacaagtggtgttaaaaatctaatatt---AGAACAC-GCATTTGTACA---GAGT-----TAAATAATATAC-ACT--TTTTTAAGAATTACAAAGGAGACAGGCCAGCGCAGGCATGATAC-TTTG-----T-GTCAGTAAAAATCGACTTTTTGA--GTAAA-ATGGTGAATA-A----C---------------ATATT--------TC-TCTTATTCATCAGAATACTTCCGAATCGAACGCCAAT-TGGAACCCTGGTATCAAGACGAAAACTTCAA-ACTT-CT-T-TGCATTGT-TTC-GCAAGT-AA-CGGAGGCTAAACAGTATTTTTTGAAATT-GGATGCCAAAGCGAACA---ATT-TTAAATTTTGCTATACTACAAAATTTAGGCGCAG-GGAAATCCTGCtagtagtg
gi|11 : GTTTC-TCT---T-T--TTTACTGTATGTCTTTTTGATATCACAAT-CCAACACATTCATGAATGACCTATCAAACACATGATCATAGTTGTT--ATGTTAGTTGCAAC--AAGTGTTCG--ATATAATAT-----AGCTATATAATATGAGCGT-AAATTTATATAAAAC-AAAATATTTGAAAGACAAATGCA----ATTTTATAATAACCCAAACAACCTGTGGT
gi|12 : tactatgaaaccatattaaaatataccaaaaagtcattttcatccaaaatgttgtttggtaccttctggcattaacccagcgatatgAATTTCTTGTCAAAATATGATAT-------ACGGATTTAACAATGAGTTAA----T---------AAATACAGATCGAAAGA----CAGATAGAAA--AAAA--CTGTT----AAAAT----A------AAAATAT-T-TTTT-TATTCAAATAGATGAC---CT--ATGCATA---------ATTTTTAGTTGGTGATGATATAATTGTATACAGTTTTTGTTTC---T---T-T--TTTATTGTATGCCTTTTTGATAT-----------TACATTG----ATGACCCATCAAACGCATAATAATAGTTTCT--ATGTTAGTTGCAACAGAAGTATTCC--TTAAAATGT-------C-------CA-AAG-AC-AAAAACATAcatacatgtgatgg
gi|13 : TT----ATAAG----AA---TGAAAATAT-T-TTTT-AATTCAAATAGATGATG--CTTTATGGATA---------ATTTTTAGTTGGTGATGACATAATTGTATACAG-ATTTGTTTC-G-T---T-T--Tacg
gi|13 : ttTTGGTGA-TGAC--AT-AATTGTATA--CAGATTTGTTTCGTTTTAGTTGCAACTGAAGTCTTCC--ATATAATGT-----TGT-------TATGACCAT-AAAATAATATAAA--AAAAATATTTGAAAGACAGTTGGAATTTATTTTATAAT-AACCAAACAACCTGTGGTTGATAGAT----AGAAGGAAACAAACA---AACAATGTAATAT---AACAAGGGTTGCATC-------------ACATATAC-T-----Tagttgcaactgaagtcttccatataatgttgttatgaccataaaataatataaaaaaaatatttgaaagacagttggaatttattttataataaccaaacaacctgtggttgatagatagaaggaaacaaacaaacaatgtaatataacaagggttgcatcacatatacttcacttga
gi|14 : ttttataagaatgaaaatattttttaattcaaatagatgatgctttatggataatttttagAATTTCTAATCAGAATATGATAT-------ACGGATTTACCAATGAGCTCA----C---------A-----AGATCTAATGA-----------------ATT--TT-----------------------------T-T-TTTT-AATTCAAATAGAT------CT--ATGGATATTTTCT--AATTCTTTGTTG-----GACGT----------GG-TTTTGATTC-TGT---TGT--TTTTTTGTATATCTTTTTGATATCATAAACCCAACACATTCATGAATGACATGTCAAGCACATGATCATAGTGGTT--GTGTTAGTTGCAAC--AAGTCCTTT--GTGTAGTGT-----AGC-------CACGAGcacttga
gi|16 : AAATTCTTGTCACAATATGATAT-------ACGGATTTACCAATGAGCTCA----TTGAAT----A----CAGATTGAAAGA----CAGATAG----------------------------------TGGAAATATCT-TTTT-AATTCAAAAAGATGATG---------GATA---------ATTTTTATTTTGTGATGACATAACTGTATACAG-TTTTGTTTCTT-T---T-T--TTTATTGTATGCC--TTTGATATCATAAA-TC-ATACA---ATG-ATGATCCAC---ACGCATGATCATAGTTGCT--ATGTTGGTTGCAAT--AAGTCTTCC--At
gi|17 : AATGTTATTAAGT-------TACGACCATTAAAATCATATAAAACAAAA-TATTTGAAAGACAAATGAATTTTATTTGATAATAAACCAAAAAACCTGTGGTTGATAGATAGAACGAAAGAAACGAACATTTAACAACATAGTAT---AACATGGACTGCTTT-------------ACTTGTAA-T-----TTT
gi|18 : GAAAAA----CAGATAGAA-----TT--TTTTTTATCATAAT----AG---CGAAAATAT-T-TTTT-AATACAAATAGATGGTGATCT--ATGGA-------T--AATTTTTAGTTGGTGATGACAACATTGTA--------TTCCCTT-T-T---T-T--TTTATTGTACGCCTTTTTGAC-CCAT----CAAACACA-TGATgagacca
gi|19 : tAATTTCTTGTCAAAATA--------------CGTATTTACC------TTTA--------------A----AAGCTTGAAAGA----CAGATAGAA-----TT--TTTTT----ATCAT----AAAAGCGAAAACAT-T-TTTTTAAAACAAACAGATAATGATCT--ATGGATA---------ATTTTTAGTTGGTGATGACATAATTGTATTCAC-TT--------T-T---T-T--TTTATTGTAcatagttgctatgtatg
gi|2 : tAATTTTTTGTCAGAATATGATAT-------ACATATTTACCAATGAGCTCA----T---------A----CAGATCTAAAGA----CAGATAGAAAGAAATT--TTGTT----ATAAT----A----TGAAAATAT-T-TCTT-AATTCAAATA----ATA--TT--ATGTATATTTTCT--ATTTTTTACTTTGTGATGACATGACTGTATACAG-TTTTGATTC-T-T---T-T--TTTATTGTATTCCTTTTTGATATCACAAA-TCAACACATTCATGAATGGCCCGTCAAACACATAATCATAGTTGTT--GTGTTAGCTGCCACAAACGTCTTCC--ATATAATGT-----AGA-------TACGAGCAT-AAAGTCATATTAAACAAAAATATTTGAACAACACATGCAATTTATTTTATAATAAACCAAACAACCTGTGATTGATAAATAGAAAGAAAGAAACGAG-A---AACAACATGGTGTTAAAAAAC----TGTTTA-------------TTTTGTATGT-----TTTTCGGCGTTATAGATAATACTTTAAATGTGGTTGGTTTACTAGAAGTTTTGATTTTATATCACCTG-------TATAAAAA-------GA---AAAAAAT-GCATTCGTATAATAGCGTAAACGTCAATAAAAAATGACTGATTTTCACGAACGACAAAAGAGGAAAGC----ACAA-------AC-TTTG-----G-TTCA-----AGTCGATATTTTGA--ATAAACAAAGCAAATATAAGTTT--C--CTT-TTTAAAATGCTCTAGCCTTTC-TTTTATTAATATAAATAATTCCGAATCGAGCGTCATTCTGAAATCGTGGTAGTGTGACCACAATTTCAA-TTTT-CC-C-TGCATTTT-TCC-CCAAAT-AA-TGACGGTC--ATATTTATCGTCG--CTTGGGACGCTGAAGGGGGAT---CTT-TT-ATCGTTGCTATACT----AAT----GCGCAG-AACTA--CTGCAT
gi|20 : tcATGCCTTTTTGATATCATAAA-CCAA-------------------TCAAACA-ATGATCCTAGTTGTT--ATGTTAGTTGCAACAAAAGTCTT-----TATAATGT-----AGC-------TAGGAACAT-AAAATCATAAAAAACAAAAAAA--TGAAAGACAGATGCAATTTATTTTA
gi|22 : TTTTGTCAGACTATAATAT-------ACAGACTTATCATTGAGCTCAGTCAT---------A----CAGATCTGAAGA----CAGATAAAAG--AAAT--TTGTT----ATAA
gi|23 : AAAC----TGGGGGGC--ATATTAATCGTCA--CTTGGGATGCTGAAGGGGACTC--TTT-TT-ACCATTGCTATACT----AAT----Gaaat
gi|3 : tatcctat----CAGATCTAAAGA----CAGATAAAAA------------T----ATG-T----A----T-------T-T-TTTT-AATTCAAATA--------------TGGTTATTTTCT--AATTTTTAGTTGACGATGACACAGCTGTATACAG-TTTTGATTC-T-TG--T-T--TTTATTGTATACC-----------ATAAA-CCAACACATTCATGAATGACCTATCAAACACGTGATCATAGCTGCT--ATGTTAGTAGCAACAAA-GTCTTCC--ATGTAATGT-----AGC-------TACGAACAT-AAAATCATATGAAACAAAA-TATTTGAAAGATGGATGCAATTTATTTTATAATAAACCAAACAACATGTGGTTGATAGATAGGAAGAAAGAAACGAAAA---AACTATATAGTAT---AACACGGGTTGCCTCTGAACAAGTGGTGTCTAATAT-TTGATATCTTCATCGCTATAGATAATACTTTAAATGTGGCAGGCATACTAGAAGTTCTGATTTTATAGCAAATG-------TATAATAA-AAG---AAAATAAAAAACAACATTCCTATAATAGCGTCAACGTCAATAAAAATC--CTGATTTTCGAGAACGACGAAAGAGGTGAGA----ACAA-------AC-ATTG-----GCTTTA-----AGT
gi|3 : AGTTTTTC-TGTTATTAATATAAATAATTCCAAATCGAACGTCAATCTGAAATCGCAGTATTGAGACCACAATGTCAA-TTTTCCC-C-TGCA-TTT-TACACAAAAC-----------------TTTATTGCCG--CTTTGTACGCT-AAAGGGACTATATTT-TT-ATCGTTGTTATACT----AAT----Gttttctgttattaatataaataattccaaatcgaacgtcaatctgaaatcgcagtattgagaccacaatgtcaattttcccctgcattttacacaaaactttattgccgctttgtacgctaaagggactatatttttatcgttgttatactaatgt
gi|4 : cagatctaaagacagataaaaatatgtatttttttaattcaaatatggttattttctaatttttagttgacgatgacacagctgtatacagttttgattcttgtttttattgtataccataaaccaacacattcatgaatgacctatcaaacacgtgatcatagctgctatgttagtagcaacaaagtcttccatgtaatgtagctacgaacataaaatcatatgaaacaaaatatttgaaagatggatgcaatttattttataataaaccaaacaacatgtggttgatagataggaagaaagaaacgaaaaaactatatagtataacacgggttgcctctgaacaagtggtgtctaatatttgatatcttcatcgctatagataatactttaaatgtggcaggcatactagaagttctgattttatagcaaatgtataataaaagaaaataaaaaacaacattcctataatagcgtcaacgtcaataaaaatcctgattttcgagaacgacgaaagaggtgagaacaaacattggctttaCAAAAGTCTTCC--ACATAATGT-----AGC-------TACGAGCAT-AAAATCATATCAAAC-GAAGTATTTGAAAGACAGATGCAATTTATTTTATAATAATTCAAACAAC--------GA-----------------ACAAAC-------AACATAGTAT---TATATGGGTTGGCTC-------------CCTTTTAC-A-----TTTt
gi|4 : ATTTT---GTAAATG-------TATAAAAATAAG---GA---AAAAAAC--CATTCGTTTAAAAGCGTAAACGTCAATAAAAA-TGACATATTTTCACGAATGGTGAAAGAGAAAGGT----ACAG-------CG-TTTA-----C-CT--------ATCGATAATT-GA--ATAAACAAAGCAAATATA----CATC--ATT-TTTAAAGTATTCCAGCCTTTTGTTTTATTGATATAAATAATTCCGAATCGAACGACAATCTGAATTCGTGGTATTGAGCCCACAATTTCTA-TTTT-CCTC-TGCA-TTT-TAT-CAAAACAAA-TGGCGGCC--ATATAAATCGTAG--CTTGGGAGGCTTCAGGGGACT---ATT-TT-ACgagacgacccccatataatgtattcctgaccaaatcgcatgaacacgacaaaaaatcgaacaagtggtgttaaaaaatgtaatattttgtaaatgtataaaaataaggaaaaaaaccattcgtttaaaagcgtaaacgtcaataaaaatgacatattttcacgaatggtgaaagagaaaggtacagcgtttacctatcgataattgaataaacaaagcaaatatacatcatttttaaagtattccagccttttgttttattgatataaataattccgaatcgaacgacaatctgaattcgtggtattgagcccacaatttctattttcctctgcattttatcaaaacaaatggcggccatataaatcgtagcttgggaggcttcaggggactattttactaac
gi|5 : caaaagtcttccacataatgtagctacgagcataaaatcatatcaaacgaagtatttgaaagacagatgcaatttattttataataattcaaacaacgaacaaacaacatagtattatatgggttggctcccttttacatttgagacgacccccatataatgtattcctgaccaaatcgcatgaacacgacaaaaaatcgaacaagtggtgttaaaaaatgtaatAATAT-ATATCGGCAAAATGGATTTACCAATGAGCTCA----T---------A----AATATAGAAAGAAAGGCAGATAGAAAGTAATT--TTATT----ATAACGATAA----TTAAAATAT-TGTTTT-AATTCAAATAGATGATGTCCT--ATGGATATTTTCT--AATATTTAGTTGACGATGACATGATTGTATAAAG-TTTTGTGTC-T-T---T-T--TTTAGTGTATGCCTTTTTGATATCATAAA-CCAAAACATTG----ATGACCCATCAA--GCA-------------T--ATG---------ACAAAAGTCTTCCATATATAATGT-----AGC-------CACGAGCAT-AAAG-CATATAAAAC-AAAATATTTGGAAGACAGATGAAATTTATTTTATAATAAACTAAACAACGTGTGGTTAATAG-----AAAAAAAAAACGAAGA---AAC-------------AACACGTGTTGCCTC-------------TCTTCTAC-G-----TTTtaac
gi|6 : aacATTTCTTGTCACAATATGATAT-------ACGGATTTACCAATGAGCTCA----TGACATGAATA----CAGATCAAAAGA----CAGTTGGAAA--AAAAAATTATT----ATAATG---A----TGAAATTTT-T-TTTT-AATTCAAATAGATGATG--ATCAATGGATA---------ATTTTTAGTTGGTGATGACATAACTGTATAAAG-TTTT-----------------TTTATTGTATGCCTCTTTGATATCATAAA-CCAACACATTGATGA----TCCATCAGAAGCATTATCATAGATGCT--ATGTTAATTGCAACAGAAGTCTTCC--ATATAACGT-----AGT-------TACGACCAT-AAAATCTTATAAAAC-CAAATATTTGAAAGACAGATGAAATACACTTTATAACAAACCAAACAACCTGTGGTTGATAGAT----AGAAAGAAATTAACA---AACATCATAGTAT---AACATGGGTTGTCTC-------------ACTTATTC-T-----TTTgaaacgaccccatataatgtctctctgatcaaatcgcgtgaacgtggcgttaaaaaat
gi|7 : GTCAGAAAATGATAT-------ACGGATTTACCAATGAGCTCA----TGAAT-----A----TAGATAGAAAGA----CAGATAAAAA--AAAT--T-GTTG---ATAAT----------GGATATAT-T-TTTT-AATTCAAATAGATGATGATCT--ATGGATA---------ATTTTTAGTCGGTGATGACATAATTGTATACAG-TTTTGTTTC-T-TCTGT-T--TTTATTGTATGCCTTTTTGATAACATAAA-CCAACACATTGATGA----CCCATCAAACACATGATTATAGTTGTT--ATGTAAGTTGCAACAAAAGTCTTCC--ATATAATGT-----AGT-------TACGACCAT-TAAATTAAATAAAACAAAA-TATTTGAAAGACAGATGAAATTTATTATATAATAAATCAAACAACCTGTGGTTTATATACAGAAAGAAAGAAGCGAACA---AACAACAGAGTAT---A--ACGGGTTGCCTC-------------ATTTGTAC-T-----TTTgagacgacccccat
gi|8 : TGAGATTGTGGTATTGAGACCACAATTTCAAATTTT-CC-T-TGCATTTTATAC-CAAAAA-TA-TGGTGGCC--ATATTAATCGTCA--CTTTGAACGCTAAAGGGGACTA--TTT-TT-ACCGTTGCTATACT----AAT----GAGCAgagatgacccaca
gi|9 : TGCTAAAAGTTCTGATTTTATAGCACATGACTATTATATAAAAA-AAGAAAGA---AAAAAAC-ACATTCTTATAATAGCGTAAACTTCAATAAAAAATGACCGATTTTCACAAATGGC-----ACATTGGCCTTTACAG-------A---TTGACGA-G-TTTA-----TATCGATATTTTGA--ATAAACAAAGCAAATATA----CTAC--CTT-TTAAAAGTATTCCAGCCTTTC-TTTTATTAATATAAAGAATTCTGAATCGATCATCATTCTGAAATCGTGGTATnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaaaacatggtcaacagaacaacaaagagtatagaacaaaattgtaatataggccgcacaatccctatagaaggcattcacatt
gi|9 : -AA-TCGTGGT---ATATTAATCGTTG--CTTGGGATGCTGAAGGGGACT---ATTCTT-ACCGTTGCTATACT----AAT----GCATAGTAGTTGT-CTGCATattaatcgttgcttgggatgctgaaggggactattcttaccgttgctatactaatgcatagtagttgtctgcatttaatgtcattttaatgttttgctctctgtttgatagaacaaaaattgcaat
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|15 ): TAGAAACAATGAGCCGAACAAACAACAGTAATTGGTTTTAACACGAGAAGACGACCCCTGTTATGTAACTGGCCAATCAGCATCAAGTGTAGTCACAGCAAATAATTACAATATCAAGGACAGGTGGTGTTAAAAATTTAATATTTCCATCATTGATAATGTCTACATGCGTGCTGCAGTTATAATTTAAGAACTGATCTAATAATAGATAAACGAATTATATTGCATAACAGTGTAAACTTAA
Unaligned ( gi|21 ): ATTATATAGCTGACCAATCATTGACAAGTGTGATTTTCACCACCACAAAGAATTGCAATAACTAGGACATGTGGTCTATTTTTCATCATTATTATATTAAAATCTCAACATGTGTGTTGAAGGACTGATTAAATA
Alignments
lowQualScore : 1111111 55555555555555 4444444444444444444444444444444444 222222 555555555 111111 1111111 111 22222222222222 1111111 2222222 333333333333 11 111 2222 555555555555555555555555555555 11 4444444444 1111 1111 1111 1111 1 22
lowQualScore : 3333333 44444444444444 88888 7777 6666666666666666666666666666666666 3 3 6 666666 666666666 0 0 3 1 9999999 3 44 3 0 111111 44 88 44 77777 0000000 0 3 8 7 1 2 11 111 1 777 0 777 55555555555555 2 4444444 11 11 6666666 444444444444 33 3 2 000 2 1 0 88 1 8888 888888888888888888888888888888 0 11 0 6666666666 8 22 3 6 22 6 6 888 7 6 6 3333 3 8888 66 2 3 9999 5 5 3 2222 2222 0 1 00
lowQualScore : ....... .............. ..... .... .................................. . . . ...... ......... . . . . ....... . .. . . ...... .. .. .. ..... ....... . . . . . . .. ... . ... . ... .............. . ....... .. .. ....... ............ .. . . ... . . . .. . .... .............................. . .. . .......... . .. . . .. . . ... . . . .... . .... .. . . .... . . . .... .... . . ..
lowQualScore : 0000000 99999999999999 33333 1111 4444444444444444444444444444444444 3 3 7 888888 444444444 1 4 3 8 0000000 1 22 3 4 999999 66 00 22 77777 0000000 2 3 8 9 4 5 99 777 1 888 8 888 44444444444444 3 0000000 88 66 0000000 111111111111 00 2 5 888 5 0 7 88 0 3333 777777777777777777777777777777 8 00 8 4444444444 0 00 2 7 88 7 7 777 3 7 7 5555 4 5555 99 5 4 8888 0 0 4 1111 1111 0 0 77
consensus : NNAATTTCTTGTCAGAATATGATAT-------ACGGATTTACCAATGAGCTCA----T---------A----CAGATCGAAAGA----CAGATAGAAA--AATT--TTGTT----ATAAT----A----TGAAAATAT-T-TTTT-AATTCAAATAGATGATG--CT--ATGGATATTTT-T--AATTTTTAGTTGGTGATGACATAACTGTATACAG-TTTTGTTTC-T-T---T-T--TTTATTGTATGCCTTTTTGATATCATAAA-CCAACACATTGATGAATGACCCATCAAACGCATGATCATAGTTGTT--ATGTTAGTTGCAACAAAAGTCTTCC--ATATAATGT-----AGC-------TACGAGCAT-AAAATCATATAAAACAAAAATATTTGAAAGACAGATGCAATTTATTTTATAATAAACCAAACAACCTGTGGTTGATAGATAGAAAGAAAGAAACGAACA---AACAACATAGTAT---AACACGGGTTGCCTC-------------NCTTGTAC-T-----TTTTCGTCGTTATAGATAATACTTTAAATGTGGCAGGCATACTAGAAGTTCTGATTTTATAGCAAATG-------TATAAAAA-AAG---GA---AAAAAAC-GCATTCGTATAATAGCGTAAACGTCAATAAAAAACGACTGATTTTCACGAACGACGAAAGAGANAGGC----ACAG-------AC-TTTG-----G-TTCA-----AATCGATATTTTGA--ATAAACAAAGCAAATATA----C--C--CTT-TTTAAAGTATTCCAGCCTTTC-TTTTATTAATATAAATAATTCCGAATCGAACGTCAATCTGAAATCGTGGTATTGAGACCACAATTTCAA-TTTT-CC-C-TGCATTTT-TAC-CAAAAC-AA-TGGCGGCC--ATATTAATCGTCG--CTTGGGACGCTGAAGGGGACT---NTT-TT-ACCGTTGCTATACT----AAT----GCGCAG-AGNTAT-CTGCAT
Reference ( family-157 ) : NNAATTTCTTGTCAGAATATGATAT-------ACGGATTTACCAATGAGCTCA----T---------A----CAGATCGAAAGA----CAGATAGAAA--AATT--TTGTT----ATAAT----A----TGAAAATAT-T-TTTT-AATTCAAATAGATGATG--CT--ATGGATATTTT-T--AATTTTTAGTTGGTGATGACATAACTGTATACAG-TTTTGTTTC-T-T---T-T--TTTATTGTATGCCTTTTTGATATCATAAA-CCAACACATTGATGAATGACCCATCAAACGCATGATCATAGTTGTT--ATGTTAGTTGCAACAAAAGTCTTCC--ATATAATGT-----AGC-------TACGAGCAT-AAAATCATATAAAACAAAAATATTTGAAAGACAGATGCAATTTATTTTATAATAAACCAAACAACCTGTGGTTGATAGATAGAAAGAAAGAAACGAACA---AACAACATAGTAT---AACACGGGTTGCCTC-------------NCTTGTAC-T-----TTTTCGTCGTTATAGATAATACTTTAAATGTGGCAGGCATACTAGAAGTTCTGATTTTATAGCAAATG-------TATAAAAA-AAG---GA---AAAAAAC-GCATTCGTATAATAGCGTAAACGTCAATAAAAAACGACTGATTTTCACGAACGACGAAAGAGANAGGC----ACAG-------AC-TTTG-----G-TTCA-----AATCGATATTTTGA--ATAAACAAAGCAAATATA----C--C--CTT-TTTAAAGTATTCCAGCCTTTC-TTTTATTAATATAAATAATTCCGAATCGAACGTCAATCTGAAATCGTGGTATTGAGACCACAATTTCAA-TTTT-CC-C-TGCATTTT-TAC-CAAAAC-AA-TGGCGGCC--ATATTAATCGTCG--CTTGGGACGCTGAAGGGGACT---NTT-TT-ACCGTTGCTATACT----AAT----GCGCAG-AGNTAT-CTGCAT
gi|1 : AATTTCTTGTCAGAATATGATAA-------AGAGATTTATCAATGAGCTCA----TGAATGAAT-A----CAGACCGAAAGA----CAGTTAGATA--T-TT--TTGTT----ACAAT----AA---TGAAAATAT-T-TTTTTAATTAAAATAGATGATGGTCT--ATGGATATTTT-TTTAATTTT-AGTTGATAATGTCATAACTGTATAAAG-TTC-GTTTC-T-T---T-TTTTTTATTGTATGCCTTTTTGATATCATACA-CCAACACATTG----ATGACCCATCAAGCATATGATCATAGTTGTA--ATGT------------AAGTCTTCC--ATATAATGT-----AGC-------TACGAGCAC-AAAACCATATTAAACAA----ATT----------ATGCAGATTATTTTACAATAAACCAAACAA----------AT---TAGAAAGAAAGAAACGAACA---AACATC--AGTAT---AACACGGATTGGCTA-------------CCTTCTAT-T-----TTT
gi|1 : tTTGTATGT-----TTTTTGTCGTTATAGATAATTCTTTAAATATGGCAGGCATAATAGAAGTTCTGGTTTAAAAATAATTG-------TATAAAAA-A----------------T-ACATTCGTATAATAGAGTAAACGT----AAAAAATGACTGATTTTCATGAATGA----AGAGAAAAGC----ACAGCGCTG--GCATTTGCGCGAG-TTCA-----AATCGATATTTTTTTTATAAACAAAGCAAGTATA----T--CAACTTATTTTAAGTATTCAAGCCATTC-TTTTAGTAGTACAAATAATTCCGAATTAAAA---AAACTGAAATCGTGATAATGAGCCCACAATTTCAA-TTTT-TC-CGTGTATTTT--AC-CAAAAC-AAATGGCGGCC--ATATGAATCGTCG--CTTGGGACGTTGAAGGATACT---ATT-TT-A--------A---T----AAT----GCGCAG-gagactacccatataatgcgtatctgaccaaatcacgtgaacaccgtaaaaaatcgaacaagtggtgttaaaaatctaatattttgtatgttttttgtcgttatagataattctttaaatatggcaggcataatagaagttctggtttaaaaataattgtataaaaaatacattcgtataatagagtaaacgtaaaaaatgactgattttcatgaatgaagagaaaagcacagcgctggcatttgcgcgagttcaaatcgatattttttttataaacaaagcaagtatatcaacttattttaagtattcaagccattcttttagtagtacaaataattccgaattaaaaaaactgaaatcgtgataatgagcccacaatttcaatttttccgtgtattttaccaaaacaaatggcggccatatgaatcgtcgcttgggacgttgaaggatactattttaataatgcgcagtagtagtg
gi|10 : taatttcttgtcagaatatgataaagagatttatcaatgagctcatgaatgaatacagaccgaaagacagttagatatttttgttacaataatgaaaatatttttttaattaaaatagatgatggtctatggatatttttttaattttagttgataatgtcataactgtataaagttcgtttctttttttttattgtatgcctttttgatatcatacaccaacacattgatgacccatcaagcatatgatcatagttgtaatgtaagtcttccatataatgtagctacgagcacaaaaccatattaaacaaattatgcagattattttacaataaaccaaacaaattagaaagaaagaaacgaacaaacatcagtataacacggattggctaccttctatttttgagactacccatataatgcgtatctgaccaaatcacgtgaacaccgtaaaaaatcgaacaagtggtgttaaaaatctaatatt---AGAACAC-GCATTTGTACA---GAGT-----TAAATAATATAC-ACT--TTTTTAAGAATTACAAAGGAGACAGGCCAGCGCAGGCATGATAC-TTTG-----T-GTCAGTAAAAATCGACTTTTTGA--GTAAA-ATGGTGAATA-A----C---------------ATATT--------TC-TCTTATTCATCAGAATACTTCCGAATCGAACGCCAAT-TGGAACCCTGGTATCAAGACGAAAACTTCAA-ACTT-CT-T-TGCATTGT-TTC-GCAAGT-AA-CGGAGGCTAAACAGTATTTTTTGAAATT-GGATGCCAAAGCGAACA---ATT-TTAAATTTTGCTATACTACAAAATTTAGGCGCAG-GGAAATCCTGCtagtagtg
gi|11 : GTTTC-TCT---T-T--TTTACTGTATGTCTTTTTGATATCACAAT-CCAACACATTCATGAATGACCTATCAAACACATGATCATAGTTGTT--ATGTTAGTTGCAAC--AAGTGTTCG--ATATAATAT-----AGCTATATAATATGAGCGT-AAATTTATATAAAAC-AAAATATTTGAAAGACAAATGCA----ATTTTATAATAACCCAAACAACCTGTGGT
gi|12 : tactatgaaaccatattaaaatataccaaaaagtcattttcatccaaaatgttgtttggtaccttctggcattaacccagcgatatgAATTTCTTGTCAAAATATGATAT-------ACGGATTTAACAATGAGTTAA----T---------AAATACAGATCGAAAGA----CAGATAGAAA--AAAA--CTGTT----AAAAT----A------AAAATAT-T-TTTT-TATTCAAATAGATGAC---CT--ATGCATA---------ATTTTTAGTTGGTGATGATATAATTGTATACAGTTTTTGTTTC---T---T-T--TTTATTGTATGCCTTTTTGATAT-----------TACATTG----ATGACCCATCAAACGCATAATAATAGTTTCT--ATGTTAGTTGCAACAGAAGTATTCC--TTAAAATGT-------C-------CA-AAG-AC-AAAAACATAcatacatgtgatgg
gi|13 : TT----ATAAG----AA---TGAAAATAT-T-TTTT-AATTCAAATAGATGATG--CTTTATGGATA---------ATTTTTAGTTGGTGATGACATAATTGTATACAG-ATTTGTTTC-G-T---T-T--Tacg
gi|13 : ttTTGGTGA-TGAC--AT-AATTGTATA--CAGATTTGTTTCGTTTTAGTTGCAACTGAAGTCTTCC--ATATAATGT-----TGT-------TATGACCAT-AAAATAATATAAA--AAAAATATTTGAAAGACAGTTGGAATTTATTTTATAAT-AACCAAACAACCTGTGGTTGATAGAT----AGAAGGAAACAAACA---AACAATGTAATAT---AACAAGGGTTGCATC-------------ACATATAC-T-----Tagttgcaactgaagtcttccatataatgttgttatgaccataaaataatataaaaaaaatatttgaaagacagttggaatttattttataataaccaaacaacctgtggttgatagatagaaggaaacaaacaaacaatgtaatataacaagggttgcatcacatatacttcacttga
gi|14 : ttttataagaatgaaaatattttttaattcaaatagatgatgctttatggataatttttagAATTTCTAATCAGAATATGATAT-------ACGGATTTACCAATGAGCTCA----C---------A-----AGATCTAATGA-----------------ATT--TT-----------------------------T-T-TTTT-AATTCAAATAGAT------CT--ATGGATATTTTCT--AATTCTTTGTTG-----GACGT----------GG-TTTTGATTC-TGT---TGT--TTTTTTGTATATCTTTTTGATATCATAAACCCAACACATTCATGAATGACATGTCAAGCACATGATCATAGTGGTT--GTGTTAGTTGCAAC--AAGTCCTTT--GTGTAGTGT-----AGC-------CACGAGcacttga
gi|16 : AAATTCTTGTCACAATATGATAT-------ACGGATTTACCAATGAGCTCA----TTGAAT----A----CAGATTGAAAGA----CAGATAG----------------------------------TGGAAATATCT-TTTT-AATTCAAAAAGATGATG---------GATA---------ATTTTTATTTTGTGATGACATAACTGTATACAG-TTTTGTTTCTT-T---T-T--TTTATTGTATGCC--TTTGATATCATAAA-TC-ATACA---ATG-ATGATCCAC---ACGCATGATCATAGTTGCT--ATGTTGGTTGCAAT--AAGTCTTCC--At
gi|17 : AATGTTATTAAGT-------TACGACCATTAAAATCATATAAAACAAAA-TATTTGAAAGACAAATGAATTTTATTTGATAATAAACCAAAAAACCTGTGGTTGATAGATAGAACGAAAGAAACGAACATTTAACAACATAGTAT---AACATGGACTGCTTT-------------ACTTGTAA-T-----TTT
gi|18 : GAAAAA----CAGATAGAA-----TT--TTTTTTATCATAAT----AG---CGAAAATAT-T-TTTT-AATACAAATAGATGGTGATCT--ATGGA-------T--AATTTTTAGTTGGTGATGACAACATTGTA--------TTCCCTT-T-T---T-T--TTTATTGTACGCCTTTTTGAC-CCAT----CAAACACA-TGATgagacca
gi|19 : tAATTTCTTGTCAAAATA--------------CGTATTTACC------TTTA--------------A----AAGCTTGAAAGA----CAGATAGAA-----TT--TTTTT----ATCAT----AAAAGCGAAAACAT-T-TTTTTAAAACAAACAGATAATGATCT--ATGGATA---------ATTTTTAGTTGGTGATGACATAATTGTATTCAC-TT--------T-T---T-T--TTTATTGTAcatagttgctatgtatg
gi|2 : tAATTTTTTGTCAGAATATGATAT-------ACATATTTACCAATGAGCTCA----T---------A----CAGATCTAAAGA----CAGATAGAAAGAAATT--TTGTT----ATAAT----A----TGAAAATAT-T-TCTT-AATTCAAATA----ATA--TT--ATGTATATTTTCT--ATTTTTTACTTTGTGATGACATGACTGTATACAG-TTTTGATTC-T-T---T-T--TTTATTGTATTCCTTTTTGATATCACAAA-TCAACACATTCATGAATGGCCCGTCAAACACATAATCATAGTTGTT--GTGTTAGCTGCCACAAACGTCTTCC--ATATAATGT-----AGA-------TACGAGCAT-AAAGTCATATTAAACAAAAATATTTGAACAACACATGCAATTTATTTTATAATAAACCAAACAACCTGTGATTGATAAATAGAAAGAAAGAAACGAG-A---AACAACATGGTGTTAAAAAAC----TGTTTA-------------TTTTGTATGT-----TTTTCGGCGTTATAGATAATACTTTAAATGTGGTTGGTTTACTAGAAGTTTTGATTTTATATCACCTG-------TATAAAAA-------GA---AAAAAAT-GCATTCGTATAATAGCGTAAACGTCAATAAAAAATGACTGATTTTCACGAACGACAAAAGAGGAAAGC----ACAA-------AC-TTTG-----G-TTCA-----AGTCGATATTTTGA--ATAAACAAAGCAAATATAAGTTT--C--CTT-TTTAAAATGCTCTAGCCTTTC-TTTTATTAATATAAATAATTCCGAATCGAGCGTCATTCTGAAATCGTGGTAGTGTGACCACAATTTCAA-TTTT-CC-C-TGCATTTT-TCC-CCAAAT-AA-TGACGGTC--ATATTTATCGTCG--CTTGGGACGCTGAAGGGGGAT---CTT-TT-ATCGTTGCTATACT----AAT----GCGCAG-AACTA--CTGCAT
gi|20 : tcATGCCTTTTTGATATCATAAA-CCAA-------------------TCAAACA-ATGATCCTAGTTGTT--ATGTTAGTTGCAACAAAAGTCTT-----TATAATGT-----AGC-------TAGGAACAT-AAAATCATAAAAAACAAAAAAA--TGAAAGACAGATGCAATTTATTTTA
gi|22 : TTTTGTCAGACTATAATAT-------ACAGACTTATCATTGAGCTCAGTCAT---------A----CAGATCTGAAGA----CAGATAAAAG--AAAT--TTGTT----ATAA
gi|23 : AAAC----TGGGGGGC--ATATTAATCGTCA--CTTGGGATGCTGAAGGGGACTC--TTT-TT-ACCATTGCTATACT----AAT----Gaaat
gi|3 : tatcctat----CAGATCTAAAGA----CAGATAAAAA------------T----ATG-T----A----T-------T-T-TTTT-AATTCAAATA--------------TGGTTATTTTCT--AATTTTTAGTTGACGATGACACAGCTGTATACAG-TTTTGATTC-T-TG--T-T--TTTATTGTATACC-----------ATAAA-CCAACACATTCATGAATGACCTATCAAACACGTGATCATAGCTGCT--ATGTTAGTAGCAACAAA-GTCTTCC--ATGTAATGT-----AGC-------TACGAACAT-AAAATCATATGAAACAAAA-TATTTGAAAGATGGATGCAATTTATTTTATAATAAACCAAACAACATGTGGTTGATAGATAGGAAGAAAGAAACGAAAA---AACTATATAGTAT---AACACGGGTTGCCTCTGAACAAGTGGTGTCTAATAT-TTGATATCTTCATCGCTATAGATAATACTTTAAATGTGGCAGGCATACTAGAAGTTCTGATTTTATAGCAAATG-------TATAATAA-AAG---AAAATAAAAAACAACATTCCTATAATAGCGTCAACGTCAATAAAAATC--CTGATTTTCGAGAACGACGAAAGAGGTGAGA----ACAA-------AC-ATTG-----GCTTTA-----AGT
gi|3 : AGTTTTTC-TGTTATTAATATAAATAATTCCAAATCGAACGTCAATCTGAAATCGCAGTATTGAGACCACAATGTCAA-TTTTCCC-C-TGCA-TTT-TACACAAAAC-----------------TTTATTGCCG--CTTTGTACGCT-AAAGGGACTATATTT-TT-ATCGTTGTTATACT----AAT----Gttttctgttattaatataaataattccaaatcgaacgtcaatctgaaatcgcagtattgagaccacaatgtcaattttcccctgcattttacacaaaactttattgccgctttgtacgctaaagggactatatttttatcgttgttatactaatgt
gi|4 : cagatctaaagacagataaaaatatgtatttttttaattcaaatatggttattttctaatttttagttgacgatgacacagctgtatacagttttgattcttgtttttattgtataccataaaccaacacattcatgaatgacctatcaaacacgtgatcatagctgctatgttagtagcaacaaagtcttccatgtaatgtagctacgaacataaaatcatatgaaacaaaatatttgaaagatggatgcaatttattttataataaaccaaacaacatgtggttgatagataggaagaaagaaacgaaaaaactatatagtataacacgggttgcctctgaacaagtggtgtctaatatttgatatcttcatcgctatagataatactttaaatgtggcaggcatactagaagttctgattttatagcaaatgtataataaaagaaaataaaaaacaacattcctataatagcgtcaacgtcaataaaaatcctgattttcgagaacgacgaaagaggtgagaacaaacattggctttaCAAAAGTCTTCC--ACATAATGT-----AGC-------TACGAGCAT-AAAATCATATCAAAC-GAAGTATTTGAAAGACAGATGCAATTTATTTTATAATAATTCAAACAAC--------GA-----------------ACAAAC-------AACATAGTAT---TATATGGGTTGGCTC-------------CCTTTTAC-A-----TTTt
gi|4 : ATTTT---GTAAATG-------TATAAAAATAAG---GA---AAAAAAC--CATTCGTTTAAAAGCGTAAACGTCAATAAAAA-TGACATATTTTCACGAATGGTGAAAGAGAAAGGT----ACAG-------CG-TTTA-----C-CT--------ATCGATAATT-GA--ATAAACAAAGCAAATATA----CATC--ATT-TTTAAAGTATTCCAGCCTTTTGTTTTATTGATATAAATAATTCCGAATCGAACGACAATCTGAATTCGTGGTATTGAGCCCACAATTTCTA-TTTT-CCTC-TGCA-TTT-TAT-CAAAACAAA-TGGCGGCC--ATATAAATCGTAG--CTTGGGAGGCTTCAGGGGACT---ATT-TT-ACgagacgacccccatataatgtattcctgaccaaatcgcatgaacacgacaaaaaatcgaacaagtggtgttaaaaaatgtaatattttgtaaatgtataaaaataaggaaaaaaaccattcgtttaaaagcgtaaacgtcaataaaaatgacatattttcacgaatggtgaaagagaaaggtacagcgtttacctatcgataattgaataaacaaagcaaatatacatcatttttaaagtattccagccttttgttttattgatataaataattccgaatcgaacgacaatctgaattcgtggtattgagcccacaatttctattttcctctgcattttatcaaaacaaatggcggccatataaatcgtagcttgggaggcttcaggggactattttactaac
gi|5 : caaaagtcttccacataatgtagctacgagcataaaatcatatcaaacgaagtatttgaaagacagatgcaatttattttataataattcaaacaacgaacaaacaacatagtattatatgggttggctcccttttacatttgagacgacccccatataatgtattcctgaccaaatcgcatgaacacgacaaaaaatcgaacaagtggtgttaaaaaatgtaatAATAT-ATATCGGCAAAATGGATTTACCAATGAGCTCA----T---------A----AATATAGAAAGAAAGGCAGATAGAAAGTAATT--TTATT----ATAACGATAA----TTAAAATAT-TGTTTT-AATTCAAATAGATGATGTCCT--ATGGATATTTTCT--AATATTTAGTTGACGATGACATGATTGTATAAAG-TTTTGTGTC-T-T---T-T--TTTAGTGTATGCCTTTTTGATATCATAAA-CCAAAACATTG----ATGACCCATCAA--GCA-------------T--ATG---------ACAAAAGTCTTCCATATATAATGT-----AGC-------CACGAGCAT-AAAG-CATATAAAAC-AAAATATTTGGAAGACAGATGAAATTTATTTTATAATAAACTAAACAACGTGTGGTTAATAG-----AAAAAAAAAACGAAGA---AAC-------------AACACGTGTTGCCTC-------------TCTTCTAC-G-----TTTtaac
gi|6 : aacATTTCTTGTCACAATATGATAT-------ACGGATTTACCAATGAGCTCA----TGACATGAATA----CAGATCAAAAGA----CAGTTGGAAA--AAAAAATTATT----ATAATG---A----TGAAATTTT-T-TTTT-AATTCAAATAGATGATG--ATCAATGGATA---------ATTTTTAGTTGGTGATGACATAACTGTATAAAG-TTTT-----------------TTTATTGTATGCCTCTTTGATATCATAAA-CCAACACATTGATGA----TCCATCAGAAGCATTATCATAGATGCT--ATGTTAATTGCAACAGAAGTCTTCC--ATATAACGT-----AGT-------TACGACCAT-AAAATCTTATAAAAC-CAAATATTTGAAAGACAGATGAAATACACTTTATAACAAACCAAACAACCTGTGGTTGATAGAT----AGAAAGAAATTAACA---AACATCATAGTAT---AACATGGGTTGTCTC-------------ACTTATTC-T-----TTTgaaacgaccccatataatgtctctctgatcaaatcgcgtgaacgtggcgttaaaaaat
gi|7 : GTCAGAAAATGATAT-------ACGGATTTACCAATGAGCTCA----TGAAT-----A----TAGATAGAAAGA----CAGATAAAAA--AAAT--T-GTTG---ATAAT----------GGATATAT-T-TTTT-AATTCAAATAGATGATGATCT--ATGGATA---------ATTTTTAGTCGGTGATGACATAATTGTATACAG-TTTTGTTTC-T-TCTGT-T--TTTATTGTATGCCTTTTTGATAACATAAA-CCAACACATTGATGA----CCCATCAAACACATGATTATAGTTGTT--ATGTAAGTTGCAACAAAAGTCTTCC--ATATAATGT-----AGT-------TACGACCAT-TAAATTAAATAAAACAAAA-TATTTGAAAGACAGATGAAATTTATTATATAATAAATCAAACAACCTGTGGTTTATATACAGAAAGAAAGAAGCGAACA---AACAACAGAGTAT---A--ACGGGTTGCCTC-------------ATTTGTAC-T-----TTTgagacgacccccat
gi|8 : TGAGATTGTGGTATTGAGACCACAATTTCAAATTTT-CC-T-TGCATTTTATAC-CAAAAA-TA-TGGTGGCC--ATATTAATCGTCA--CTTTGAACGCTAAAGGGGACTA--TTT-TT-ACCGTTGCTATACT----AAT----GAGCAgagatgacccaca
gi|9 : TGCTAAAAGTTCTGATTTTATAGCACATGACTATTATATAAAAA-AAGAAAGA---AAAAAAC-ACATTCTTATAATAGCGTAAACTTCAATAAAAAATGACCGATTTTCACAAATGGC-----ACATTGGCCTTTACAG-------A---TTGACGA-G-TTTA-----TATCGATATTTTGA--ATAAACAAAGCAAATATA----CTAC--CTT-TTAAAAGTATTCCAGCCTTTC-TTTTATTAATATAAAGAATTCTGAATCGATCATCATTCTGAAATCGTGGTATnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaaaacatggtcaacagaacaacaaagagtatagaacaaaattgtaatataggccgcacaatccctatagaaggcattcacatt
gi|9 : -AA-TCGTGGT---ATATTAATCGTTG--CTTGGGATGCTGAAGGGGACT---ATTCTT-ACCGTTGCTATACT----AAT----GCATAGTAGTTGT-CTGCATattaatcgttgcttgggatgctgaaggggactattcttaccgttgctatactaatgcatagtagttgtctgcatttaatgtcattttaatgttttgctctctgtttgatagaacaaaaattgcaat
blockSeqs : CGGCAAA TGACATGAAT AATAC AAGG AGTAATTTTATTATAACGATAATT C G T CTTT TTTTCTA T T TTCTG G . C CATGAA TC AG AT TATTA TATATAA T A A C C GA AGA C TTT TAA TGAACAAGTGGTGT G TTGATA AT CC ACTATTA AAGAAAAT AA A A ATG G A CA C CAGC GCATGATACTTTGTGTCAGTAAA . AGTTTC . TA T G GC A C TC T A A AAA A CTAA AA G A ATAT C A A ACAA TTAG T C T
blockSeqs : . TTGAAT C . AAAAAAATTATTATAATGATG . . . ATCT TTTTCTA . T TCT . . . CATGAA . TG . . . . A A G C GA AGA C . . A A GT AT AA . AAGAAAGA G C C ATG G C CA A CTTT ATTGACGAGTTTA . CATC . TA C . GT . . T T . . AA C TC . G G CT . . T . . . T .
blockSeqs : . GTCAT A . TTTTTTTTATCATAATAGCG . . . ATCT TTTTCTA . T TGT . . . CATGAA . AA . . . . A A A C AA AGG A . . A G GT AT AA . TAAGGA G A C AC T A CG T . ACATTGGCTTTA . CTAC . AA C . GT . . C T . . AA G GC . T G AT . . C . . .
blockSeqs : . TGAAT C . AGAAATTTTGTTATAATATG . . . TCCT TTTTCTA . A TTT . . . CATGAA . AA . . . . A A C C GA AGA C . . T G T . CA . GA A A C TC G C TG A . ACTTTGGTTCA . C . . . . GA . . C . . . TA C CC . G T A . . T . .
blockSeqs : . T C . TTTTTTTATCATAAAAGCG . . . ATCA TA . T TTG . . . GGTGA . AA . . . . A G C A GA . G . . C A T . . C TG . C C T . CGTTTACCT . AT . . T . . . AA T CC . T A C . . C . .
blockSeqs : . C C . AAAAACTGTTAAAATA . . . ATCT . . C GT . . . GATGA . AA . . . . A A C G TA . C . . T T A . T T . G G A . . C . .
blockSeqs : . T A . AAAATTGTTGATAATG . . . CT . . A TT . . . GATGA . AA . . . . . A C C G . C . . A C G . . . . . . A . . C
blockSeqs : . T C . ATATGTAT . . . CT . . A TT . . . ATGA . AG . . . . . . A C . . . . . A A T
blockSeqs : . . T . ATTTT . . . TT . . T TT . . . GA . AA . . . . . . A . G T
blockSeqs : . . TG . . . . . . T TT . . . GA . . . . . . . . A
blockSeqs : . . . . . . . . T . . . . . . . . . .
blockSeqs : . . . . . . . .
blockSeqCons : TAT*********** AATTTTTTATAATACG****************** ********* ** ATGA** AA GA AG* AAGGA******* TC* CG ACGTTGACTTTA****************** ** GT C** AA**
originalCons : NNAATTTCTTGTCAGAATATGATAT-------ACGGATTTACCAATGAGCTCA----T---------A----CAGATCGAAAGA----CAGATAGAAA--AATT--TTGTT----ATAAT----A----TGAAAATAT-T-TTTT-AATTCAAATAGATGATG--CT--ATGGATATTTT-T--AATTTTTAGTTGGTGATGACATAACTGTATACAG-TTTTGTTTC-T-T---T-T--TTTATTGTATGCCTTTTTGATATCATAAA-CCAACACATTGATGAATGACCCATCAAACGCATGATCATAGTTGTT--ATGTTAGTTGCAACAAAAGTCTTCC--ATATAATGT-----AGC-------TACGAGCAT-AAAATCATATAAAACAAAAATATTTGAAAGACAGATGCAATTTATTTTATAATAAACCAAACAACCTGTGGTTGATAGATAGAAAGAAAGAAACGAACA---AACAACATAGTAT---AACACGGGTTGCCTC-------------NCTTGTAC-T-----TTTTCGTCGTTATAGATAATACTTTAAATGTGGCAGGCATACTAGAAGTTCTGATTTTATAGCAAATG-------TATAAAAA-AAG---GA---AAAAAAC-GCATTCGTATAATAGCGTAAACGTCAATAAAAAACGACTGATTTTCACGAACGACGAAAGAGANAGGC----ACAG-------AC-TTTG-----G-TTCA-----AATCGATATTTTGA--ATAAACAAAGCAAATATA----C--C--CTT-TTTAAAGTATTCCAGCCTTTC-TTTTATTAATATAAATAATTCCGAATCGAACGTCAATCTGAAATCGTGGTATTGAGACCACAATTTCAA-TTTT-CC-C-TGCATTTT-TAC-CAAAAC-AA-TGGCGGCC--ATATTAATCGTCG--CTTGGGACGCTGAAGGGGACT---NTT-TT-ACCGTTGCTATACT----AAT----GCGCAG-AGNTAT-CTGCAT
finalCons : NNAATTTCTTGTCAGAATATGATAT-------ACGGATTTACCAATGAGCTCATAT-----------A----CAGATCGAAAGA----CAGATAGAAAATTTTTTATAATACG------------------AAAATAT-T-TTTT-AATTCAAATAGATGATG--CT--ATGGATA---------ATTTTTAGTTGGTGATGACATAACTGTATACAG-TTTTGTTTC-T-T---T-T--TTTATTGTATGCCTTTTTGATATCATAAA-CCAACACATTATGA--TGACCCATCAAACGCATGATCATAGTTGTT--ATGTTAGTTGCAACAAAAGTCTTCC--ATATAATGT-----AGC-------TACGAGCAT-AAAATCATATAAAACAAAAATATTTGAAAGACAGATGCAATTTATTTTATAATAAACCAAACAACCTGTGGTTGATAGATAG-AAGAAAGAAACGAACA---AACAACATAGTAT---AACACGGGTTGCCTC-------------NCTTGTAC-T-----TTTTCGTCGTTATAGATAATACTTTAAATGTGGCAGGCATACTAGAAGTTCTGATTTTATAGCAAATG-------TATAAAAAAAGGA-------AAAAAAC-GCATTCGTATAATAGCGTAAACGTCAATAAAAATC-ACTGATTTTCACGAACGACGAAAGAGANAGGC----ACAGACGTTGACTTTA------------------AATCGATATTTTGA--ATAAACAAAGCAAATATA----C--C--CTT-TTTAAAGTATTCCAGCCTTTC-TTTTATTAATATAAATAATTCCGAATCGAACGTCAATCTGAAATCGTGGTATTGAGACCACAATTTCAA-TTTT-CCC--TGCATTTT-TAC-CAAAACAA--TGGCGGCC--ATATTAATCGTCG--CTTGGGACGCTGAAGGGGACT---NTT-TT-ACCGTTGCTATACT----AAT----GCGCAG-AGNTAT-CTGCAT
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|15 ): TAGAAACAATGAGCCGAACAAACAACAGTAATTGGTTTTAACACGAGAAGACGACCCCTGTTATGTAACTGGCCAATCAGCATCAAGTGTAGTCACAGCAAATAATTACAATATCAAGGACAGGTGGTGTTAAAAATTTAATATTTCCATCATTGATAATGTCTACATGCGTGCTGCAGTTATAATTTAAGAACTGATCTAATAATAGATAAACGAATTATATTGCATAACAGTGTAAACTTAA
Unaligned ( gi|21 ): ATTATATAGCTGACCAATCATTGACAAGTGTGATTTTCACCACCACAAAGAATTGCAATAACTAGGACATGTGGTCTATTTTTCATCATTATTATATTAAAATCTCAACATGTGTGTTGAAGGACTGATTAAATA
Alignments
lowQualScore : 1111111 44444444444444 5555555555555555555555555555555555555555 222222 1111111 1111111 333 1111111 1 11111 22222222222222 1111111 2222222 333333333333 11 2222 111 666666666666666666666666666 11 4444444444 1111 1111 1111 1111 1 22
lowQualScore : 3333333 99999999999999 4444444444444444444444444444444444444444 3 3 6 3 444444 999999 0000000 4444444 3 1 9999999 3 44 3 1 111 3 9 44 88 44 77777 0000000 0 3 3 3 1 2 3 11111 4 3 777 0 777 55555555555555 2 4444444 11 11 6666666 444444444444 33 3 2 2 6 888 2 1 0 88 1 8888 111 888888888888888888888888888 0 11 0 6666666666 8 22 3 6 22 6 6 888 7 6 6 3333 3 8888 66 2 3 9999 5 5 3 2222 2222 0 1 00
lowQualScore : ....... .............. ........................................ . . . . ...... ...... ....... ....... . . ....... . .. . . ... . . .. .. .. ..... ....... . . . . . . . ..... . . ... . ... .............. . ....... .. .. ....... ............ .. . . . . ... . . . .. . .... ... ........................... . .. . .......... . .. . . .. . . ... . . . .... . .... .. . . .... . . . .... .... . . ..
lowQualScore : 0000000 00000000000000 5555555555555555555555555555555555555555 3 3 7 3 000000 666666 8888888 2222222 3 8 0000000 1 22 3 0 888 1 2 22 00 22 77777 0000000 2 3 3 5 4 5 9 44444 4 9 888 8 888 44444444444444 3 0000000 88 66 0000000 111111111111 00 5 5 5 7 333 5 0 7 88 0 3333 888 777777777777777777777777777 8 00 8 4444444444 0 00 2 7 88 7 7 777 3 7 7 5555 4 5555 99 5 4 8888 0 0 4 1111 1111 0 0 77
consensus : NNAATTTCTTGTCAGAATATGATAT-------ACGGATTTACCAATGAGCTCA--T-------A--TACAGATCGAAAGACAGATAGA--AA---A--T----TTT-TTAT---AAT----A----TGAAAATAT-T-TTTT-AATTCAAATA-GATGATG--CT--ATGGATA------ATTT-------TT-------AGTTGGTGATGACATAATTGTATACAG-TTTTGTTTC-T-T---T-T--TTTATTGTATGCCTTTTTGATATCATAAA-CCAACACATT-ATG-A-TGACCCATCAAACGCATGATCATAGTTGTT--ATGTTAGTTGCAACAAAAGTCTTCC--ATATAATGT-----AGC-------TACGAGCAT-AAAATCATATAAAACAAAAATATTTGAAAGACAGATGCAATTTATTTTATAATAAACCAAACAACCTGTGGTTGATAGATA-G-AA-GAAAGAAACGAACA---AACAACATAGTAT---AACACGGGTTGCCTC-------------NCTTGTAC-T-----TTTTCGTCGTTATAGATAATACTTTAAATGTGGCAGGCATACTAGAAGTTCTGATTTTATAGCAAATG-------TATAAAAA-AAG---GA---AAAAAAC-GCATTCGTATAATAGCGTAAACGTCAAT-AAAAA-TGACTGATTTTCACGAACGACGAAAGAGANAGGC----ACAGACGTTGG--C-----------TTT----------AAATCGATATTTTGA--ATAAACAAAGCAAATATA----C--C--CTT-TTTAAAGTATTCCAGCCTTTC-TTTTATTAATATAAATAATTCCGAATCGAACGTCAATCTGAAATCGTGGTATTGAGACCACAATTTCAA-TTTT-CC-C-TGCATTTT-TAC-CAAAAC-AA-TGGCGGCC--ATATTAATCGTCG--CTTGGGACGCTGAAGGGGACT---NTT-TT-ACCGTTGCTATACT----AAT----GCGCAG-AGNTAT-CTGCAT
Reference ( family-157 ) : NNAATTTCTTGTCAGAATATGATAT-------ACGGATTTACCAATGAGCTCA--T-------A--TACAGATCGAAAGACAGATAGA--AA---A--T----TTT-TTAT---AAT----A----CGAAAATAT-T-TTTT-AATTCAAATA-GATGATG--CT--ATGGATA------ATTT-------TT-------AGTTGGTGATGACATAACTGTATACAG-TTTTGTTTC-T-T---T-T--TTTATTGTATGCCTTTTTGATATCATAAA-CCAACACATT-ATG-A-TGACCCATCAAACGCATGATCATAGTTGTT--ATGTTAGTTGCAACAAAAGTCTTCC--ATATAATGT-----AGC-------TACGAGCAT-AAAATCATATAAAACAAAAATATTTGAAAGACAGATGCAATTTATTTTATAATAAACCAAACAACCTGTGGTTGATAGATA-G-AA-GAAAGAAACGAACA---AACAACATAGTAT---AACACGGGTTGCCTC-------------NCTTGTAC-T-----TTTTCGTCGTTATAGATAATACTTTAAATGTGGCAGGCATACTAGAAGTTCTGATTTTATAGCAAATG-------TATAAAAA-AAG---GA---AAAAAAC-GCATTCGTATAATAGCGTAAACGTCAAT-AAAAA-TCACTGATTTTCACGAACGACGAAAGAGANAGGC----ACAGACGTTGA--C-----------TTT----------AAATCGATATTTTGA--ATAAACAAAGCAAATATA----C--C--CTT-TTTAAAGTATTCCAGCCTTTC-TTTTATTAATATAAATAATTCCGAATCGAACGTCAATCTGAAATCGTGGTATTGAGACCACAATTTCAA-TTTT-CC-C-TGCATTTT-TAC-CAAAAC-AA-TGGCGGCC--ATATTAATCGTCG--CTTGGGACGCTGAAGGGGACT---NTT-TT-ACCGTTGCTATACT----AAT----GCGCAG-AGNTAT-CTGCAT
gi|1 : AATTTCTTGTCAGAATATGATAA-------AGAGATTTATCAATGAGCTCA--TGAATGA-A--TACAGACCGAAAGACAGTTAGA--TA---T--T----TTTGTTAC---AAT----AA---TGAAAATAT-T-TTTTTAATTAAAATA-GATGATGGTCT--ATGGATA------TTTT-------TTTAATTTTAGTTGATAATGTCATAACTGTATAAAG-TTC-GTTTC-T-T---T-TTTTTTATTGTATGCCTTTTTGATATCATACA-CCAACACAT---TG-A-TGACCCATCAAGCATATGATCATAGTTGTA--ATGT------------AAGTCTTCC--ATATAATGT-----AGC-------TACGAGCAC-AAAACCATATTAAACAA----ATT----------ATGCAGATTATTTTACAATAAACCAAACAA---AT------TAGA-----AA-GAAAGAAACGAACA---AACATC--AGTAT---AACACGGATTGGCTA-------------CCTTCTAT-T-----TTT
gi|1 : tTTGTATGT-----TTTTTGTCGTTATAGATAATTCTTTAAATATGGCAGGCATAATAGAAGTTCTGGTTTAAAAATAATTG-------TATAAAAA-A----------------T-ACATTCGTATAATAGAGTAAACGT--A--AAAAA-TGACTGATTTTCATGAATGA----AGAGAAAAGC----ACAG-CGCTGG--CATTTGCGCGAGTTC----------AAATCGATATTTTTTTTATAAACAAAGCAAGTATA----T--CAACTTATTTTAAGTATTCAAGCCATTC-TTTTAGTAGTACAAATAATTCCGAATTAAAA---AAACTGAAATCGTGATAATGAGCCCACAATTTCAA-TTTT-TC-CGTGTATTTT--AC-CAAAAC-AAATGGCGGCC--ATATGAATCGTCG--CTTGGGACGTTGAAGGATACT---ATT-TT-A--------A---T----AAT----GCGCAG-gagactacccatataatgcgtatctgaccaaatcacgtgaacaccgtaaaaaatcgaacaagtggtgttaaaaatctaatattttgtatgttttttgtcgttatagataattctttaaatatggcaggcataatagaagttctggtttaaaaataattgtataaaaaatacattcgtataatagagtaaacgtaaaaaatgactgattttcatgaatgaagagaaaagcacagcgctggcatttgcgcgagttcaaatcgatattttttttataaacaaagcaagtatatcaacttattttaagtattcaagccattcttttagtagtacaaataattccgaattaaaaaaactgaaatcgtgataatgagcccacaatttcaatttttccgtgtattttaccaaaacaaatggcggccatatgaatcgtcgcttgggacgttgaaggatactattttaataatgcgcagtagtagtg
gi|10 : taatttcttgtcagaatatgataaagagatttatcaatgagctcatgaatgaatacagaccgaaagacagttagatatttttgttacaataatgaaaatatttttttaattaaaatagatgatggtctatggatatttttttaattttagttgataatgtcataactgtataaagttcgtttctttttttttattgtatgcctttttgatatcatacaccaacacattgatgacccatcaagcatatgatcatagttgtaatgtaagtcttccatataatgtagctacgagcacaaaaccatattaaacaaattatgcagattattttacaataaaccaaacaaattagaaagaaagaaacgaacaaacatcagtataacacggattggctaccttctatttttgagactacccatataatgcgtatctgaccaaatcacgtgaacaccgtaaaaaatcgaacaagtggtgttaaaaatctaatatt---AGAACAC-GCATTTGTACAG-AGT-TAAAT---AAT-ATA----CACT--TTTTTAAGAATTACAAAGGAGACAGGCCAGCGCAGGCAT-GATAC-----------TTTGTGTCAGTAAAAATCGACTTTTTGA--GTAAA-ATGGTGAATA-A----C---------------ATATT--------TC-TCTTATTCATCAGAATACTTCCGAATCGAACGCCAAT-TGGAACCCTGGTATCAAGACGAAAACTTCAA-ACTT-CT-T-TGCATTGT-TTC-GCAAGT-AA-CGGAGGCTAAACAGTATTTTTTGAAATT-GGATGCCAAAGCGAACA---ATT-TTAAATTTTGCTATACTACAAAATTTAGGCGCAG-GGAAATCCTGCtagtagtg
gi|11 : GTTTC-TCT---T-T--TTTACTGTATGTCTTTTTGATATCACAAT-CCAACACATTCATG-AATGACCTATCAAACACATGATCATAGTTGTT--ATGTTAGTTGCAAC--AAGTGTTCG--ATATAATAT-----AGCTATATAATATGAGCGT-AAATTTATATAAAAC-AAAATATTTGAAAGACAAATGCA----ATTTTATAATAACCCAAACAACCTGTGGT
gi|12 : tactatgaaaccatattaaaatataccaaaaagtcattttcatccaaaatgttgtttggtaccttctggcattaacccagcgatatgAATTTCTTGTCAAAATATGATAT-------ACGGATTTAACAATGAGTTAA--T-------AAATACAGATCGAAAGACAGATAGA--AA---A--AAA--CTG-TTAA---AAT----A------AAAATAT-T-TTTT-TATTCAAATA-GATGAC---CT--ATGCATA------ATTT-------TT-------AGTTGGTGATGATATAATTGTATACAGTTTTTGTTTC---T---T-T--TTTATTGTATGCCTTTTTGATAT-----------TACAT---TG-A-TGACCCATCAAACGCATAATAATAGTTTCT--ATGTTAGTTGCAACAGAAGTATTCC--TTAAAATGT-------C-------CA-AAG-AC-AAAAACATAcatacatgtgatgg
gi|13 : TT-TTAT---AAG----AA---TGAAAATAT-T-TTTT-AATTCAAATA-GATGATG--CTTTATGGATA------ATTT-------TT-------AGTTGGTGATGACATAATTGTATACAG-ATTTGTTTC-G-T---T-T--Tacg
gi|13 : TG-A-TGAC--AT-AATTGTATA--CAGATTTGTTTCGTTTTAGTTGCAACTGAAGTCTTCC--ATATAATGT-----TGT-------TATGACCAT-AAAATAATATAAA--AAAAATATTTGAAAGACAGTTGGAATTTATTTTATAAT-AACCAAACAACCTGTGGTTGATAGATA-G-AA-G---GAAACAAACA---AACAATGTAATAT---AACAAGGGTTGCATC-------------ACATATAC-T-----Tagttgcaactgaagtcttccatataatgttgttatgaccataaaataatataaaaaaaatatttgaaagacagttggaatttattttataataaccaaacaacctgtggttgatagatagaaggaaacaaacaaacaatgtaatataacaagggttgcatcacatatacttcacttga
gi|14 : ttttataagaatgaaaatattttttaattcaaatagatgatgctttatggataatttttagttggAATTTCTAATCAGAATATGATAT-------ACGGATTTACCAATGAGCTCA--C-------A-----AGATCTAATGA---------------A--T----TTT-TT-----------------------------TTTT-AATTCAAATA-GAT------CT--ATGGATA------TTTT-------CT-------AATT--------CTTTGTTGGACGTGG-TTTTGATTC-TGT---TGT--TTTTTTGTATATCTTTTTGATATCATAAACCCAACACATTCATGAA-TGACATGTCAAGCACATGATCATAGTGGTT--GTGTTAGTTGCAAC--AAGTCCTTT--GTGTAGTGT-----AGC-------CACGAGcacttga
gi|16 : AAATTCTTGTCACAATATGATAT-------ACGGATTTACCAATGAGCTCA--TTGA----A--TACAGATTGAAAGACAGATAG---------------------------------------TGGAAATATCT-TTTT-AATTCAAAAA-GATGATG---------GATA------ATTT-------TT-------ATTTTGTGATGACATAACTGTATACAG-TTTTGTTTCTT-T---T-T--TTTATTGTATGCC--TTTGATATCATAAA-TC-ATACA---ATG-A-TGATCCAC---ACGCATGATCATAGTTGCT--ATGTTGGTTGCAAT--AAGTCTTCC--At
gi|17 : AATGTTATTAAGT-------TACGACCATTAAAATCATATAAAACAAAA-TATTTGAAAGACAAATGAATTTTATTTGATAATAAACCAAAAAACCTGTGGTTGATAGATA-G-AACGAAAGAAACGAACATTTAACAACATAGTAT---AACATGGACTGCTTT-------------ACTTGTAA-T-----TTT
gi|18 : GAAAAACAGATAGA--AT---T--T----TTT-TTATCATAAT----AG---CGAAAATAT-T-TTTT-AATACAAATA-GATGGTGATCT--ATGGATA------ATTT-------TT-------AGTTGGTGATGACAACATTGTA--------TTCCCTT-T-T---T-T--TTTATTGTACGCCTTTT------------------------------TGACCCATCAAACACATGATCATAGTTGCT--ATGTgagacca
gi|19 : tAATTTCTTGTCAAAATA--------------CGTATTTACC------TTTA--------------AAAGCTTGAAAGACAGATAGA--AT------T----TTT-TTAT---CAT----AAAAGCGAAAACAT-T-TTTTTAAAACAAACA-GATAATGATCT--ATGGATA------ATTT-------TT-------AGTTGGTGATGACATAATTGTATTCAC-TT--------T-T---T-T--TTTATTGTAatg
gi|2 : tAATTTTTTGTCAGAATATGATAT-------ACATATTTACCAATGAGCTCA--T-------A----CAGATCTAAAGACAGATAGA--AAGAAA--T----TTTGTTAT---AAT----A----TGAAAATAT-T-TCTT-AATTCAAATA-----ATA--TT--ATGTATATTTTCTATTT-------TTT------ACTTTGTGATGACATGACTGTATACAG-TTTTGATTC-T-T---T-T--TTTATTGTATTCCTTTTTGATATCACAAA-TCAACACATTCATG-AATGGCCCGTCAAACACATAATCATAGTTGTT--GTGTTAGCTGCCACAAACGTCTTCC--ATATAATGT-----AGA-------TACGAGCAT-AAAGTCATATTAAACAAAAATATTTGAACAACACATGCAATTTATTTTATAATAAACCAAACAACCTGTGATTGATAAATA-GAAA-GAAAGAAACGAG-A---AACAACATGGTGTTAAAAAAC----TGTTTA-------------TTTTGTATGT-----TTTTCGGCGTTATAGATAATACTTTAAATGTGGTTGGTTTACTAGAAGTTTTGATTTTATATCACCTG-------TATAAAAA-------GA---AAAAAAT-GCATTCGTATAATAGCGTAAACGTCAATAAAAAA-TGACTGATTTTCACGAACGACAAAAGAGGAAAGC----ACAAACTTTGG--------------TTC----------AAGTCGATATTTTGA--ATAAACAAAGCAAATATAAGTTT--C--CTT-TTTAAAATGCTCTAGCCTTTC-TTTTATTAATATAAATAATTCCGAATCGAGCGTCATTCTGAAATCGTGGTAGTGTGACCACAATTTCAA-TTTT-CC-C-TGCATTTT-TCC-CCAAAT-AA-TGACGGTC--ATATTTATCGTCG--CTTGGGACGCTGAAGGGGGAT---CTT-TT-ATCGTTGCTATACT----AAT----GCGCAG-AACTA--CTGCAT
gi|20 : tcATGCCTTTTTGATATCATAAA-CCAA--------------------TCAAACA-ATGATCCTAGTTGTT--ATGTTAGTTGCAACAAAAGTCTT-----TATAATGT-----AGC-------TAGGAACAT-AAAATCATAAAAAACAAAAAAA--TGAAAGACAGATGCAATTTATTTTA
gi|22 : TTTTGTCAGACTATAATAT-------ACAGACTTATCATTGAGCTCAGTC-------A--TACAGATCTGAAGACAGATAAAAGAA---A--T----TTG-TTAT---AA
gi|23 : AAAC----TGGGGGGC--ATATTAATCGTCA--CTTGGGATGCTGAAGGGGACTC--TTT-TT-ACCATTGCTATACT----AAT----Gaaat
gi|3 : tatcctatCAGATCTAAAGACAGATAAA--AA----------------TAT---G-T----A----T-------T-T-TTTT-AATTCAAATATGGTTATT--TT--CT----A------ATTT-------TT-------AGTTGACGATGACACAGCTGTATACAG-TTTTGATTC-T-TG--T-T--TTTATTGTATACC-----------ATAAA-CCAACACATTCATG-AATGACCTATCAAACACGTGATCATAGCTGCT--ATGTTAGTAGCAACAAA-GTCTTCC--ATGTAATGT-----AGC-------TACGAACAT-AAAATCATATGAAACAAAA-TATTTGAAAGATGGATGCAATTTATTTTATAATAAACCAAACAACATGTGGTTGATAGATAGG-AA-GAAAGAAACGAAAA---AACTATATAGTAT---AACACGGGTTGCCTCTGAACAAGTGGTGTCTAATAT-TTGATATCTTCATCGCTATAGATAATACTTTAAATGTGGCAGGCATACTAGAAGTTCTGATTTTATAGCAAATG-------TATAATAA-AAG---AAAATAAAAAACAACATTCCTATAATAGCGTCAACGTCAAT-AAAAA-TC-CTGATTTTCGAGAACGACGAAAGAGGTGAGA----ACAAACATTGG--C-----------TTT----------AAGT
gi|3 : AGTTTTTC-TGTTATTAATATAAATAATTCCAAATCGAACGTCAATCTGAAATCGCAGTATTGAGACCACAATGTCAA-TTTTCCC-C-TGCA-TTT-TACACAAAAC-----------------TTTATTGCCG--CTTTGTACGCT-AAAGGGACTATATTT-TT-ATCGTTGTTATACT----AAT----Gttttctgttattaatataaataattccaaatcgaacgtcaatctgaaatcgcagtattgagaccacaatgtcaattttcccctgcattttacacaaaactttattgccgctttgtacgctaaagggactatatttttatcgttgttatactaatgt
gi|4 : cagatctaaagacagataaaaatatgtatttttttaattcaaatatggttattttctaatttttagttgacgatgacacagctgtatacagttttgattcttgtttttattgtataccataaaccaacacattcatgaatgacctatcaaacacgtgatcatagctgctatgttagtagcaacaaagtcttccatgtaatgtagctacgaacataaaatcatatgaaacaaaatatttgaaagatggatgcaatttattttataataaaccaaacaacatgtggttgatagataggaagaaagaaacgaaaaaactatatagtataacacgggttgcctctgaacaagtggtgtctaatatttgatatcttcatcgctatagataatactttaaatgtggcaggcatactagaagttctgattttatagcaaatgtataataaaagaaaataaaaaacaacattcctataatagcgtcaacgtcaataaaaatcctgattttcgagaacgacgaaagaggtgagaacaaacattggctttaCAAAAGTCTTCC--ACATAATGT-----AGC-------TACGAGCAT-AAAATCATATCAAAC-GAAGTATTTGAAAGACAGATGCAATTTATTTTATAATAATTCAAACAAC-----------------G-AA-CAA---------------ACAACATAGTAT---TATATGGGTTGGCTC-------------CCTTTTAC-A-----TTTt
gi|4 : ATTTT---GTAAATG-------TATAAAAATAAG---GA---AAAAAAC--CATTCGTTTAAAAGCGTAAACGTCAAT-AAAAA-TGACATATTTTCACGAATGGTGAAAGAGAAAGGT----ACAG-CGTTTA--C-----------CT-------------ATCGATAATT-GA--ATAAACAAAGCAAATATA----CATC--ATT-TTTAAAGTATTCCAGCCTTTTGTTTTATTGATATAAATAATTCCGAATCGAACGACAATCTGAATTCGTGGTATTGAGCCCACAATTTCTA-TTTT-CCTC-TGCA-TTT-TAT-CAAAACAAA-TGGCGGCC--ATATAAATCGTAG--CTTGGGAGGCTTCAGGGGACT---ATT-TT-ACgagacgacccccatataatgtattcctgaccaaatcgcatgaacacgacaaaaaatcgaacaagtggtgttaaaaaatgtaatattttgtaaatgtataaaaataaggaaaaaaaccattcgtttaaaagcgtaaacgtcaataaaaatgacatattttcacgaatggtgaaagagaaaggtacagcgtttacctatcgataattgaataaacaaagcaaatatacatcatttttaaagtattccagccttttgttttattgatataaataattccgaatcgaacgacaatctgaattcgtggtattgagcccacaatttctattttcctctgcattttatcaaaacaaatggcggccatataaatcgtagcttgggaggcttcaggggactattttactaac
gi|5 : caaaagtcttccacataatgtagctacgagcataaaatcatatcaaacgaagtatttgaaagacagatgcaatttattttataataattcaaacaacgaacaaacaacatagtattatatgggttggctcccttttacatttgagacgacccccatataatgtattcctgaccaaatcgcatgaacacgacaaaaaatcgaacaagtggtgttaaaaaatgtaatAATAT-ATATCGGCAAAATGGATTTACCAATGAGCTCA--T-------AAATATAGAAAGAAAGGCAGATAGA--AAGTAA--T----TTTATTAT---AACGATAA----TTAAAATAT-TGTTTT-AATTCAAATA-GATGATGTCCT--ATGGATA------TTTTCTAATATTT-------AGTTGACGATGACATGATTGTATAAAG-TTTTGTGTC-T-T---T-T--TTTAGTGTATGCCTTTTTGATATCATAAA-CCAAAACAT---TG-A-TGACCCATCAA--GCA-------------T--ATG---------ACAAAAGTCTTCCATATATAATGT-----AGC-------CACGAGCAT-AAAG-CATATAAAAC-AAAATATTTGGAAGACAGATGAAATTTATTTTATAATAAACTAAACAACGTGTGGTT----AATA-G-AA-AAAAAAAACGAAGA---AAC-------------AACACGTGTTGCCTC-------------TCTTCTAC-G-----TTTtaac
gi|6 : aacATTTCTTGTCACAATATGATAT-------ACGGATTTACCAATGAGCTCA--TGACATGAA--TACAGATCAAAAGACAGTTGGA--AA---A--AAAAATTA-TTAT---AATG---A----TGAAATTTT-T-TTTT-AATTCAAATA-GATGATG--ATCAATGGATA------ATTT-------TT-------AGTTGGTGATGACATAACTGTATAAAG-TTTT-----------------TTTATTGTATGCCTCTTTGATATCATAAA-CCAACACATT---G-A-TGATCCATCAGAAGCATTATCATAGATGCT--ATGTTAATTGCAACAGAAGTCTTCC--ATATAACGT-----AGT-------TACGACCAT-AAAATCTTATAAAAC-CAAATATTTGAAAGACAGATGAAATACACTTTATAACAAACCAAACAACCTGTGGTTGATAGAT-----A-GAAAGAAATTAACA---AACATCATAGTAT---AACATGGGTTGTCTC-------------ACTTATTC-T-----TTTgaaacgaccccatataatgtctctctgatcaaatcgcgtgaacgtggcgttaaaaaat
gi|7 : GTCAGAAAATGATAT-------ACGGATTTACCAATGAGCTCA--TGA-----A--TATAGATAGAAAGACAGATAAA--AA---AAAT----TGT-TGAT---AAT----------GGATATAT-T-TTTT-AATTCAAATA-GATGATGATCT--ATGGATA------ATTT-------TT-------AGTCGGTGATGACATAATTGTATACAG-TTTTGTTTC-T-TCTGT-T--TTTATTGTATGCCTTTTTGATAACATAAA-CCAACACATT---G-A-TGACCCATCAAACACATGATTATAGTTGTT--ATGTAAGTTGCAACAAAAGTCTTCC--ATATAATGT-----AGT-------TACGACCAT-TAAATTAAATAAAAC-AAAATATTTGAAAGACAGATGAAATTTATTATATAATAAATCAAACAACCTGTGGTTTATATACA-GAAA-GAAAGAAGCGAACA---AACAACAGAGTAT---A--ACGGGTTGCCTC-------------ATTTGTAC-T-----TTTgagacgacccccat
gi|8 : TGAGATTGTGGTATTGAGACCACAATTTCAAATTTT-CC-T-TGCATTTTATAC-CAAAAA-TA-TGGTGGCC--ATATTAATCGTCA--CTTTGAACGCTAAAGGGGACTA--TTT-TT-ACCGTTGCTATACT----AAT----GAGCAgagatgacccaca
gi|9 : TGCTAAAAGTTCTGATTTTATAGCACATGACTATTATATAAAAA-AAGAAAGA---AAAAAAC-ACATTCTTATAATAGCGTAAACTTCAAT-AAAAAATGACCGATTTTCACAAATGGC-----ACATTGGCCTTTACAGA--TTGA--CGAG--------TTT----------ATATCGATATTTTGA--ATAAACAAAGCAAATATA----CTAC--CTT-TTAAAAGTATTCCAGCCTTTC-TTTTATTAATATAAAGAATTCTGAATCGATCATCATTCTGAAATCGTGGTATnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaaaacatggtcaacagaacaacaaagagtatagaacaaaattgtaatataggccgcacaatccctatagaaggcattcacatt
gi|9 : -AA-TCGTGGT---ATATTAATCGTTG--CTTGGGATGCTGAAGGGGACT---ATTCTT-ACCGTTGCTATACT----AAT----GCATAGTAGTTGT-CTGCATattaatcgttgcttgggatgctgaaggggactattcttaccgttgctatactaatgcatagtagttgtctgcatttaatgtcattttaatgttttgctctctgtttgatagaacaaaaattgcaat
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|15 ): TAGAAACAATGAGCCGAACAAACAACAGTAATTGGTTTTAACACGAGAAGACGACCCCTGTTATGTAACTGGCCAATCAGCATCAAGTGTAGTCACAGCAAATAATTACAATATCAAGGACAGGTGGTGTTAAAAATTTAATATTTCCATCATTGATAATGTCTACATGCGTGCTGCAGTTATAATTTAAGAACTGATCTAATAATAGATAAACGAATTATATTGCATAACAGTGTAAACTTAA
Unaligned ( gi|21 ): ATTATATAGCTGACCAATCATTGACAAGTGTGATTTTCACCACCACAAAGAATTGCAATAACTAGGACATGTGGTCTATTTTTCATCATTATTATATTAAAATCTCAACATGTGTGTTGAAGGACTGATTAAATA