lowQualScore : 1111111111111111111111111111111111111111111
lowQualScore : 11 6666666666666666666666666666666666666666666 111111111111111 22222 11111111 1 11 1 22 1111 1111111 11 111111111 11111
lowQualScore : 22 7777777777777777777777777777777777777777777 0 99 0 55 3 555 111111111111111 2 77777 6 2 4444 99999999 7777 33 2 5 6 333 2 3 2 33 2 22 2 5 33 6666 5 8888888 2 3 88 333333333 0 55555
lowQualScore : .. ........................................... . .. . .. . ... ............... . ..... . . .... ........ .... .. . . . ... . . . .. . .. . . .. .... . ....... . . .. ......... . .....
lowQualScore : 00 5555555555555555555555555555555555555555555 3 22 2 00 6 444 666666666666666 5 66666 2 2 7777 55555555 8888 11 2 1 8 999 5 9 4 66 8 22 4 3 77 2222 4 9999999 5 1 33 222222222 9 44444
consensus : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCCACATATTATATTGANAACGANAGACNTGTCA-TGTTTAACANATNGCTAACGACATGAAA--TATATGT--T-T---TTTT------TTTTT--CATTTTT-TTT-T-ATTTCCATAGTACATTCACATACAATTTATNATT-ACATACATA----ATACAATTTACA------T-TCT----T--TA-TNTATATTTGTTTATGAACGTATTAT---CAGAAATAAAGTTT-AGGATTAGGACAGAATAGGTCGGAGAGAAGAGAAA-AAAA--AAGAAGGT--G-AAGAAGAAGATT--TTTTTTTAGAA-AGAAAGGTAAATT-ACT-----CC--ACACTGTCACTTTATAGATTAACATT-TTTTAT
Reference ( gi|1 ) : AAGGAAAACAATATTTTGTTTAATGTTATTAACAGATAACGGATATCTGAAAATATGTCTGCATATTATAT-GATA-TAACAGACATGCCAGTGTTTAAAAGAGAATTGAAGATATGAAA--TATATGT--T-T---TTTT------TCTTT--CATTTTT-TTTAT-ATTTCCATAGTACATTCACATACAATTTATTATT-ACATACATA----ATGCAATTTACA------A-TCT----T--TA-TATATATTTGTTTATGAACGTAATAT---TAGAAATAAAGATT-AGGATTTTGAGAGAATAGGTCGGAGAGATGAGAAA-AAAA--AAGAAAGT--G-AAGAAGAAGATT--TTTTTTTAGAA-AGAAAGGTAAATT-TCT-----CC--ACACTGTCACTTTATAGATTAACATC-TTTTAT
gi|2 : TCCACATATTATATTGATAACGAGAGACA---CA-TATT----ATATTGTTAACGA---GAGA--GACATGT--T-T---TTTTGTTTTGTTTTT--CATTTTC-TTTAT---TTCCATAGTACATTAACATACCATTTATTATT-ACACACATA----ATACAATGTATA------ATTCT----T--CA-TATATATTTGTTGATGAACGTGATAT---CAGCAATAAAGTTT-AGGATTGGGACAGAATAGGTCTGAG-GAAGAG-----AAA--CAGAAGCT--G-AAG----CGCTTGATATTTTTAGAA-AGAATGGTTAATT-ACT-----TC--ACACTGTAACTTAATAGATAAAT-TA-TTTTAT
gi|16 : tgttatattgctaacgagagacacatatcatacggttaacgagaTATAT--AGA-TAACA--CTTGTT--TGTTTAACAGA-AAC--ACAACATGATACGTGTATGT--T-T---TTTC------TC-----CATTTT------------CCATAGTACATTCATATACAATTTACAATG-ACATAAATA----ATACAATTTACA------T-TCT----T--TA-TTTATATTTGTTTGTGAATGCATTAT---TAGAAATACA-ATTGAGGATTAGGAATGAATAGGTCGAAGAGA--AGAGA-AAAA--AAGAAGAT-----AGAAGAGCATA--TTTTc
gi|3 : ATAAAT--TCTATTT--TAT---TTTG------TTTTT--C--TTTT-TTT-T-ATTTTCATAGTAAAATCTCATACAATTTACAATT-ACATACATAATTTATACAAATTACA---------------T--TA-TTTATACTTGTTTATGAATGTATTCT---TAGAAACAAAGATT-A------CAACAGAATAGGTCGGAGAGAaga
gi|14 : aaagaaacaatattttatataataataataatataaacagcgtaaattggactgaattgagtgtttcaagtgttttcaggtatttttatcgcggtagataaattgaacagatattgtgttgataatgaacgaatgatgggcttttaaaTAAAA--CATGTGTAAT-T---TCTT------TTTTT----TTCTT-TTT----TTTCCGTAGTACATTAATTTACATTTTACAATT-ACATACATG----CTACAGTTTACA------T-TAT----T--TA-TTCATATTTGTTTATGAACGCCTTTT---TAGAAAT-GAGTTT-AGAATAAGGAAAGAATTGGTCGGAGAG------AA-GAAA--AAGAAAGT--GTAAG-------------TGTTTAGAAGAAAAAAGTAAATTATCT------C--ACACTGTCAGTTCAAAGATTag
gi|5 : gtTGAGC--TAGATAT--T-T---CGTT------T--TT--CATTTTT-TT----ATTTTCATATAACATTCGTATACAATTTA-CATTAACATACATG----TTGCAAGCTATA------T-TCTTC--T--TT-TTTAAAATTGTTTATGAACGCCTTAT---TAGAAAT-TAGTTT-AGGATTAGGACAGAATTGGTCAGAGAGAAAAGAAAGAAAG--AACGAAGT--A-GAGCA-AAG------TTCTTTAG---AGAAAAGTAGATT-ACT-----TCAAAAACTGTCATTTTAAAGAATAA
gi|4 : gttgataacagaatttatatttttattgttaggaaacacacattggAA--TACATGT--T-TAGGTGTT------TGCTTAACATATTT-TTT----TTTTCATAGTACAGTCATATACAATTTATAATA-ACATACATA----ATACAACTTATA------T-TCT----C--TA-TCTATATTCCTTTATAAATACATTAT---AAGAAATACATTTT-AAGACTAGGACAGAATAGGTCGGA-AG----GAAG-AGAA--CATAAGGTA-G-AAGAACAGAA----TATTCTTAGAA-AGAAAGGTTAATT-ACT-----TC--ACACCGCCACAGCTCAGATTAAAATT-ATTTAaactagtta
gi|6 : cttttattcactagcatcgatggtagaacctagcgtaattattaactgtaagcTATCT--T-T---TATT------CCC----CATTTTT-TGT-T-ATTTCCATAGAACATTCATATACAATTTACATTT-ACATATATA----ATGCAAGCTATA------T-TCTCTCCT--T--TTTATAATTGTTTATGAAAGCATTAT---CGGAAAT-AAGTTT-AGGATAAGGACAGAATAGGTCAGAGAGAAGAGAAAGAAAG--AAGGAAGT-----AGAGCAAAGTT--CTT-----GAG-AGAAAAGTAGATT-ACC-----TCAAAAACTGTCc
gi|11 : tttacggaatacgcttatatgttgctagtatcgataaaacacgagtatgacactcgaaagaatgcttggtTAT--T-T---TTTG------TTTTT--CAATCTT-TT-A--ATTTCCATAGTACATTCACATACAATTTATTATT-ACATACATA----ATGCAATTTACA------A-TCT----T--AA-TATATATTTGTTTATGAACGTAATAT---CAGAAATAAAGTTT-AGGATTTTGACAGAATAGGTCGGAGAAAAGAG-----AAT--ATGAAAGT--G-AAGAAGA--TTT--TTTTTTTAAAA-AGAAAGGTAAATT-ACT-----CC--ACACTGTCACTTTATAGATTAACATT-TTTTATtt
gi|7 : tT--T-T---TTTT------TCATT----TTTTT-TTTGT-ATTTTCGTAGTACATTCACATACAATTTATAATT-AGATACATA----CTACAATTTACA------T-TCT----T--CA-TATATTTTTTATTATGAACGTATAAT---CAGAAATAATGTTT-AGGATTAGGACAGAATAGGTTGGAG---TGA-AGA-GAAA--AAGAAGAT-----AGAAGAGCAAT--ATTTTTTAAAA-AGAAAGGTAAATT-ACT-----CC--ACACTTTCTTTTTATTGATCAA-ATC-
gi|9 : ttaaaatggattgaactatgttcggtgac--T-T---TTTA------TTTTC--CATTTTT-TTTA--ATTTCCTTAATACATTCACATACAATTTATTATT-ACATACATA----ATGCAATTTACA------A-TCT----T--CA-TATATAATTGTTTATGAACGTAATAT---CAGAAATAAAGTTT-AGGATTTTGACAGAATTGGTCAGAGAGA--AGAGA-AAAA--AAGAAGGT--G-AAGAGGAAGA----TATTTTTAGAA-A-AAAGGTAAATTACCTGAAACCC--ACACTGTCACTTTATAGATTAAATTA-TTTTA
gi|19 : --T-T---TTCT------TCTTT----TTTTT-TT--T-ATTTCCATAGTCTATTCACATACAATTTATTTTT-TCATACATA----ATGCTATTTACA------T-TCT----T--CA-TATAAATTTGTTTATGAACGTAATAT---CAGAAATAAAGTTT-AGGATTTT
gi|15 : ---TTTT------TATT----ATTTTG-TTT-T-ATTTTCATTTTACATTCACATACAATTTATTATT-ACATACATA----ATGCAATTTACA------A-TCT----T--CA-GATATATTTGTTTATGAACGTAATAT---CAGAAATAAAGTTT-ACGATTTTGACACAATAGGTCGGAGAGAAGAG----AATA--AAGAAGGT--G-AAGAATAAGATT--TTTGTTTAGAA-AGAAAGGTAAATT-ACT-----TC--ACACTGTCACTTTATAGATTAAC
gi|10 : ---TTTT------TTTTT--TATTTTCATTT----CTTCC-TAGTACGTTCAAATACAATTTACAATT-ACATACTGA----ATACAAGCTGCA----------T----T--T------TGTTGTTTTATGAAAGTCTTAT---TAGAAAT-ACGTTT-AGAATTAGGACAGAAAAGGTCAGAGAAA--AGAAA-AAAACGAAGGAAGT-----AGACAAAGATT--TTT-----GAA-AGAAAATT--ATT-TGT----------TGCTGTCATTTCAAATAATAACATTATTTTA
gi|13 : aaatatcattgtacttggtaTTT------TGTTT--TCTTTTT-TTTAT---TTCCATTGTAAATTCACATACAATTTATTCTT-ACATATATA----ATGCAATTTACA------A-TCT----TTATA-TATATATTTGTTTATGAACGTTATAT---CAGAAATAAAGTTT-AGGATTTTGACAGAATAGATCGAAGAGA--AGAGA-AACA--AAGAAAGT--A-AAGAAGAAGA----TTTTTTTAGAA-AGAAAGGTAAATT-ACT-----CC--ACACTGTCACTTTATAGATTAAC--C-TTTTctta
gi|12 : TTTTT-TGTTT-GTTTCCGTAGGACATTCACAAACAATTTATTATT-ATAAACATA----ATATAATTAACA------T-TCT----T--CA-TATATATTTGTTTATGGACGTAATAT---CAGAAATAAAGTTT-AGGATTTTGAAAGAATAGATCGGAGAGAAGAGAAA-AAAA--A--AAGGT--G-AAGAAGAAGA-T--TGTTTTTAGAA-AGAAAGGTAAATT-ACT-----CC--GCACTGTCACTTTATAGATTAAt
gi|20 : tttgtgtgTTTTT-TTTATTATTTCCGTAGTACATTCATAT----TTTATGATT-AAATACATA----ATACAATTAACA------T-TTT----T--TA-T-TATACTTGTTTATAAACGCATTAT---TAGAAattatttt
gi|8 : attatT-ATTTCCATCGAATATTCACATACAATGTATAATT-ACATACATA----ATACAATTTACA------T-TCT----T--AATTTTATATTTGTTTATGAATG---CAT---TAAAAATAAAGTTT-AGGATAAGAAAAGAATGGGTCGAAGAGAAGAGAAA-CA-------GAAGTTAG-AAGAGTAAGATA--CTTTT---GAA-AGAAAGCTAAACT-ACG-----TC--ACATTGTCATTGAAAAGATCAGAATT-ATTTGT
gi|18 : aaacacttactgcagtacaatgtagttttgttatacgtgtgtTCATATACAATTTATAATT-ACATACATA----TTACAATTTACATTCTTCA-TAT----T--TA-TATATATTTGTTTATGACCGTATTATCAATAGCAACAAAGTTT-AGGATTAGGACAGAATAGGTTGAAGAGAAGAGAAA-GAAG--AAc
1 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|17 ): TTTTTTTATTTTTTTTTTTATTATTATTTCATAATACATACATATTGCAAATATATTTGATATAATACATACAGTTTACTTTTTTATATGAATGTATTCTATGAAACAATGTAACGGTAAGAAAAGACAGGGAAAGAAAGTAGAAAAAGGAAAAAAGACGTGGATAGAAGGAAAAGAGACC
Alignments
lowQualScore : 33333333333333333333333333333333333 33333 111 11111 1 1
lowQualScore : 6 1 0 3 44 99999999999999999999999999999999999 1 4 3 555 8888888 33 0 666666 333 1 2 4444 22 99999999999 3 22 1 333 11 11111 33 333 4 0 55555 1 2 888888 77 0 0 7
lowQualScore : . . . . .. ................................... . . . ... ....... .. . ...... ... . . .... .. ........... . .. . ... .. ..... .. ... . . ..... . . ...... .. . . .
lowQualScore : 0 0 8 2 44 99999999999999999999999999999999999 7 4 6 444 9999999 44 1 777777 999 0 1 5555 55 44444444444 1 99 9 777 44 99999 44 555 4 5 33333 7 9 222222 99 2 0 8
consensus : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCCGCATATTATATTGATAACGAGAG--ACATGTCA-T--GTTTAACAGATNATTAACGATATGAAATACGTGT-T-T---TTTT------TTTTT--CATTTTTTTT-T---ATT---TCCATAGTACATTCACATACAATTTATNATTA-CATACATA----ATGCAATTTACA-TTCTT------TA---TATATA--TTTGTTTATGAACGTATTATCA---GAAATAAAGTTTAGGATTAGGACAGAATAGGTCGGAGAGAAGAGAAA-AAAAAA--GAAGGT-G-AAGAAGAAGATT--TTTTTTTAGAA-AGAAAGGTAAATTAC------TCC--ACACTGTCACTTTATAGATTAACATTATTTTAT
Reference ( family-1561 ) : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCCACATATTATATTGANAACGANAG--ACNTGTCA-T--GTTTAACANATNGCTAACGACATGAAATATATGT-T-T---TTTT------TTTTT--CATTTTTTTT-T---ATT---TCCATAGTACATTCACATACAATTTATNATTA-CATACATA----ATACAATTTACA-TTCTT------TA---TNTATA--TTTGTTTATGAACGTATTATCA---GAAATAAAGTTTAGGATTAGGACAGAATAGGTCGGAGAGAAGAGAAA-AAAAAA--GAAGGT-G-AAGAAGAAGATT--TTTTTTTAGAA-AGAAAGGTAAATTAC------TCC--ACACTGTCACTTTATAGATTAACATT-TTTTAT
gi|1 : TCTGCATATTATAT-GATA-TAACAG--ACATGCCAGT--GTTTAAAAGAGAATTGAAGATATGAAATATATGT-T-T---TTTT------TCTTT--CATTTTTTTTAT---ATT---TCCATAGTACATTCACATACAATTTATTATTA-CATACATA----ATGCAATTTACA-ATCTT------TA---TATATA--TTTGTTTATGAACGTAATATTA---GAAATAAAGATTAGGATTTTGAGAGAATAGGTCGGAGAGATGAGAAA-AAAAAA--GAAAGT-G-AAGAAGAAGATT--TTTTTTTAGAA-AGAAAGGTAAATTTC------TCC--ACACTGTCACTTTATAGATTAACATC-TTTTAT
gi|10 : aaggaaaacaatattttgtttaatgttattaacagataacggatatctgaaaatatg---TTTT------TTTTT--TATTTTCATT-T----CT---TCC-TAGTACGTTCAAATACAATTTACAATTA-CATACTGA----ATACAAGCTGCA-TTTTG------T----TGT---------TTTATGAAAGTCTTATTA---GAAATAC-GTTTAGAATTAGGACAGAAAAGGTCAGAGAAAAGAAAAA-AACGAA--GGAAGT----AGACAAAGATT--TTT-----GAA-AGA-----AAATTAT------TTG--TTGCTGTCATTTCAAATAATAACATTATTTTA
gi|11 : aaatatcattgtacttggtaTAT-T-T---TTTG------TTTTT--CAATCTTTTA-----ATT---TCCATAGTACATTCACATACAATTTATTATTA-CATACATA----ATGCAATTTACA-ATCTT------AA---TATATA--TTTGTTTATGAACGTAATATCA---GAAATAAAGTTTAGGATTTTGACAGAATAGGTCGGAGAAAAGAG-----AATAT--GAAAGT-G-AAGAAGA--TTT--TTTTTTTAAAA-AGAAAGGTAAATTAC------TCC--ACACTGTCACTTTATAGATTAACATT-TTTTATctta
gi|12 : tTTTTTGTT-T---GTT---TCCGTAGGACATTCACAAACAATTTATTATTA-TAAACATA----ATATAATTAACA-TTCTT------CA---TATATA--TTTGTTTATGGACGTAATATCA---GAAATAAAGTTTAGGATTTTGAAAGAATAGATCGGAGAGAAGAGAAA-AAAAA----AAGGT-G-AAGAAGAAGA-T--TGTTTTTAGAA-AGAAAGGTAAATTAC------TCC--GCACTGTCACTTTATAGATTAA-ATTATTTT
gi|13 : tttgtgtgt---TTTT------GTTTT--C--TTTTTTT-T---ATT---TCCATTGTAAATTCACATACAATTTATTCTTA-CATATATA----ATGCAATTTACA-ATCTT------TA---TATATATATTTGTTTATGAACGTTATATCA---GAAATAAAGTTTAGGATTTTGACAGAATAGATCGAAGAGAAGAG--A-AACAAA--GAAAGT-A-AAGAAGAAGA----TTTTTTTAGAA-AGAAAGGTAAATTAC------TCC--ACACTGTCACTTTATAGATTAACCTT-TTT
gi|14 : TAAAACATGTGT-A-A---TTTC------TTTTT----TTTTCTTT-T---TTT---TCCGTAGTACATTAATTTACATTTTACAATTA-CATACATG----CTACAGTTTACA-TTATT------TA---TTCATA--TTTGTTTATGAACGCCTTTTTA---GAAAT-GAGTTTAGAATAAGGAAAGAATTGGTCGGAGAGAAG-------AAAAA--GAAAGT-GTAAG-------------TGTTTAGAAGAAAAAAGTAAATTAT------CTC--ACACTGTCAGTTCAAAGATT
gi|15 : gtTT------TTTAT--TATTTTGTTT-T---ATT---TTCATTTTACATTCACATACAATTTATTATTA-CATACATA----ATGCAATTTACA-ATCTT------CA---GATATA--TTTGTTTATGAACGTAATATCA---GAAATAAAGTTTACGATTTTGACACAATAGGTCGGAGAGAAGAG----AATAAA--GAAGGT-G-AAGAATAAGATT--TTTGTTTAGAA-AGAAAGGTAAATTAC------TTC--ACACTGTCACTTTATAGATTAAC
gi|16 : TATATAGATAAC-------ACTTGTT--T--GTTTAACAGA-AAC--ACAACATGA--TACGTGTAT-G---TTTT------TTCTC--CATTTT----------------CCATAGTACATTCATATACAATTTACAATGA-CATAAATA----ATACAATTTACA-TTCTT------TA---TTTATA--TTTGTTTGTGAATGCATTATTA---GAAATACAATTGAGGATTAGGAATGAATAGGTCGAAGAGAAGAG--A-AAAAAA--GAAGAT----AGAAGAGCATA--TTTT
gi|18 : TCATATACAATTTATAATTA-CATACATA----TTACAATTTACA-TTCTTCATATTTA---TATATA--TTTGTTTATGACCGTATTATCAATAGCAACAAAGTTTAGGATTAGGACAGAATAGGTTGAAGAGAAGAGAAA-GAAGAA--aga
gi|19 : ttttccaaacagatattcaaaccttttttttc-T---TTTC------TTCTT----TTTTTTTT-T---ATT---TCCATAGTCTATTCACATACAATTTATTTTTT-CATACATA----ATGCTATTTACA-TTCTT------CA---TATAAA--TTTGTTTATGAACGTAATATCA---GAAATAAAGTTTAGGATT
gi|2 : TGTTATATTGCTAACGAGAGACACATATCA-TACGGTTAACtt
gi|2 : TCCACATATTATATTGATAACGAGAG--ACA---CA-T--ATT----ATATTGTTAACGA---GAGAGACATGT-T-T---TTTTGTTTTGTTTTT--CATTTTCTTT-----ATT---TCCATAGTACATTAACATACCATTTATTATTA-CACACATA----ATACAATGTATAATTCTT------CA---TATATA--TTTGTTGATGAACGTGATATCA---GCAATAAAGTTTAGGATTGGGACAGAATAGGTCTGAG-GAAGAG-----AAACA--GAAGCT-G-AAG----CGCTTGATATTTTTAGAA-AGAATGGTTAATTAC------TTC--ACACTGTAACTTAATAGA-TAA-ATTATTTTATgagatccacatattatattgataacgagagacacatattatattgttaacgagagagacatgtttttttgttttgtttttcattttctttatttccatagtacattaacataccatttattattacacacataatacaatgtataattcttcatatatatttgttgatgaacgtgatatcagcaataaagtttaggattgggacagaataggtctgaggaagagaaacagaagctgaagcgcttgatatttttagaaagaatggttaattacttcacactgtaacttaatagataaattattttatc
gi|20 : tgttatattgctaacgagagacacatatcatacggttaacgagaT--TATTTTTTTT-T---ATTATTTCCGTAGTACATTCATAT----TTTATGATTA-AATACATA----ATACAATTAACA-TTTTT------TA---T-TATA--CTTGTTTATAAACGCATTATTA---GAAc
gi|3 : aCAGATATTGTGTTGATAATGAACG--A-ATG--A-T--G----------GGCTTTTAAAATAAATTCTATTT-TAT---TTTG------TTTTT--C--TTTTTTT-T---ATT---TTCATAGTAAAATCTCATACAATTTACAATTA-CATACATAATTTATACAAATTACA-----T------TA---TTTATA--CTTGTTTATGAATGTATTCTTA---GAAACAAA------GATTACAACAGAATAGGTCGGAGAGAAG
gi|4 : aaagaaacaatattttatataataataataatataaacagcgtaaattggactgaattgagtgtttcaagtgttttcaggtatttttatcgcggtagataaattgaaATTATTAACTGTAAGCAATACATGT-T-TAGGTGTT------TGCTTAACATATTTTTT-T-----T---TTCATAGTACAGTCATATACAATTTATAATAA-CATACATA----ATACAACTTATA-TTCTC------TA---TCTATA--TTCCTTTATAAATACATTATAA---GAAATACATTTTAAGACTAGGACAGAATAGGTCGGAAGGAAGAG------AACA--TAAGGTAG-AAGAACAGAA----TATTCTTAGAA-AGAAAGGTTAATTAC------TTC--ACACCGCCACAGCTCAGATTAAAATT-ATTTA
gi|5 : cttttattcactagcatcgatggtagaacctagcgta-T---TTCG------TTTTT--CATTTTTTT------ATT---TTCATATAACATTCGTATACAATTTA-CATTAACATACATG----TTGCAAGCTATA-TTCTTCT----TT---TTTAAA--ATTGTTTATGAACGCCTTATTA---GAAATTA-GTTTAGGATTAGGACAGAATTGGTCAGAGAGAAAAGAAA-GAAAGAACGAA-GT-A-GAGCA-AAG------TTCTTTAG---AGAAAAGTAGATTAC------TTCAAAAACTGTCATTTTAAAGAATAAc
gi|6 : gttgataacagaatttatatttttattgttaggaaacacacattggtgagctagataTAT-C-T---TTTA------TTCCC--CATTTTTTGT-T---ATT---TCCATAGAACATTCATATACAATTTACATTTA-CATATATA----ATGCAAGCTATA-TTCTC------TCCTTTTTATA--ATTGTTTATGAAAGCATTATCG---GAAAT-AAGTTTAGGATAAGGACAGAATAGGTCAGAGAGAAGAGAAAGAAAGAA--GGAAGT----AGAGCAAAGTT--CTT-----GAG-AGAAAAGTAGATTAC------CTCAAAAACTGTCaactagtta
gi|7 : tttacggaatacgcttatatgttgctagtatcgataaaacacgagtatgacactcgaaagaatgcttggtTTT------TTTTT--CATTTTTTTT-TTGTATT---TTCGTAGTACATTCACATACAATTTATAATTA-GATACATA----CTACAATTTACA-TTCTT------CA---TATATT--TTTTATTATGAACGTATAATCA---GAAATAATGTTTAGGATTAGGACAGAATAGGTTGGAGTGAAGAG-----AAAAA--GAAGAT----AGAAGAGCAAT--ATTTTTTAAAA-AGAAAGGTAAATTAC------TCC--ACACTTTCTTTTTATTGATCAAtt
gi|8 : ttaaaatggattgaactatgttcggtgacT-T---ATT---TCCATCGAATATTCACATACAATGTATAATTA-CATACATA----ATACAATTTACA-TTCTT------AAT--TTTATA--TTTGTTTATGAATGCATT---A---AAAATAAAGTTTAGGATAAGAAAAGAATGGGTCGAAGAGAAGAG-----AAACA--GAAGTTAG-AAGAGTAAGATA--CTTTT---GAA-AGAAAGCTAAACTAC------GTC--ACATTGTCATTGAAAAGATCAGAATT-ATTTGTatct
gi|9 : aaacacttactgcagtacaatgtagttttgttatacgtgtg-T-T---TTTA------TTTTC--CATTTTTTTT-A---ATT---TCCTTAATACATTCACATACAATTTATTATTA-CATACATA----ATGCAATTTACA-ATCTT------CA---TATATA--ATTGTTTATGAACGTAATATCA---GAAATAAAGTTTAGGATTTTGACAGAATTGGTCAGAGAGAAGAG--A-AAAAAA--GAAGGT-G-AAGAGGAAGA----TATTTTTAGAA-A-AAAGGTAAATTACCTGAAACCC--ACACTGTCACTTTATAGATTAA-ATTATTTTAc
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|17 ): TTTTTTTATTTTTTTTTTTATTATTATTTCATAATACATACATATTGCAAATATATTTGATATAATACATACAGTTTACTTTTTTATATGAATGTATTCTATGAAACAATGTAACGGTAAGAAAAGACAGGGAAAGAAAGTAGAAAAAGGAAAAAAGACGTGGATAGAAGGAAAAGAGACC
Alignments
lowQualScore : 11 333333333333333 111 111111 111111111111111 33333 111 11111 1
lowQualScore : 6 0 3 33 11 0 222222222222222 66 0 5 000 0 5 777 3 555 33 000000 33 0 666666 333 1 2 4444 2 2 333333333333333 1 333 11 11111 33 333 4 0 55555 1 2 888888 77 0 0 5
lowQualScore : . . . .. .. . ............... .. . . ... . . ... . ... .. ...... .. . ...... ... . . .... . . ............... . ... .. ..... .. ... . . ..... . . ...... .. . . .
lowQualScore : 0 8 2 88 00 8 000000000000000 77 8 0 000 1 4 000 6 000 99 333333 44 1 777777 999 0 1 5555 1 1 444444444444444 9 777 44 99999 44 555 4 5 33333 7 9 222222 99 2 5 7
consensus : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCCGCATATTATATTGATAACGAGAG--ACATGTCA-T--GTTTAAC-AGATTATTAACGATATGAAATACGT---GT-TT---T--TTT------TTTTT--CATTTTTTTT-T---ATT---TCCATAGTACATTCACATACAATTTATNATTA-CATACATA----ATGCAATTTACA-TTCT-T------TA---TA--TATATTTGTTTATGAACGTATTATCA---GAAATAAAGTTTAGGATTAGGACAGAATAGGTCGGAGAGAAGAGAAA-AAAAAA--GAAGGT-G-AAGAAGAAGATT--TTTTTTTAGAA-AGAAAGGTAAATTAC------TCC--ACACTGTCACTTTATAGATTAACATTATTTTAT
Reference ( family-1561 ) : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCCGCATATTATATTGATAACGAGAG--ACATGTCA-T--GTTTAAC-AGATNATTAACGATATGAAATACGT---GT-TT---T--TTT------TTTTT--CATTTTTTTT-T---ATT---TCCATAGTACATTCACATACAATTTATNATTA-CATACATA----ATGCAATTTACA-TTCT-T------TA---TA--TATATTTGTTTATGAACGTATTATCA---GAAATAAAGTTTAGGATTAGGACAGAATAGGTCGGAGAGAAGAGAAA-AAAAAA--GAAGGT-G-AAGAAGAAGATT--TTTTTTTAGAA-AGAAAGGTAAATTAC------TCC--ACACTGTCACTTTATAGATTAACATTATTTTAT
gi|1 : TCTGCATATTATAT-GATA-TAACAG--ACATGCCAGT--GTTTAAA-AGAGAATTGAAGATATGAAATATAT---GT-TT---T--TTT------TCTTT--CATTTTTTTTAT---ATT---TCCATAGTACATTCACATACAATTTATTATTA-CATACATA----ATGCAATTTACA-ATCT-T------TA---TA--TATATTTGTTTATGAACGTAATATTA---GAAATAAAGATTAGGATTTTGAGAGAATAGGTCGGAGAGATGAGAAA-AAAAAA--GAAAGT-G-AAGAAGAAGATT--TTTTTTTAGAA-AGAAAGGTAAATTTC------TCC--ACACTGTCACTTTATAGATTAACATC-TTTTAT
gi|10 : aaggaaaacaatattttgtttaatgttattaacagataacggatatctgaaaatatgTACTT---GG-TA---T--TTT------TTTTT--TATTTTCATT-T----CT---TCC-TAGTACGTTCAAATACAATTTACAATTA-CATACTGA----ATACAAGCTGCA-TTTTGT------TG---T-----------TTTATGAAAGTCTTATTA---GAAATAC-GTTTAGAATTAGGACAGAAAAGGTCAGAGAAAAGAAAAA-AACGAA--GGAAGT----AGACAAAGATT--TTT-----GAA-AGA-----AAATTAT------TTG--TTGCTGTCATTTCAAATAATAACATTATTTTA
gi|11 : aaatatcattgT---AT-TT---T--TTG------TTTTT--CAATCTTTTA-----ATT---TCCATAGTACATTCACATACAATTTATTATTA-CATACATA----ATGCAATTTACA-ATCT-T------AA---TA--TATATTTGTTTATGAACGTAATATCA---GAAATAAAGTTTAGGATTTTGACAGAATAGGTCGGAGAAAAGAG-----AATAT--GAAAGT-G-AAGAAGA--TTT--TTTTTTTAAAA-AGAAAGGTAAATTAC------TCC--ACACTGTCACTTTATAGATTAACATT-TTTTATctta
gi|12 : tTTTTTGTT-T---GTT---TCCGTAGGACATTCACAAACAATTTATTATTA-TAAACATA----ATATAATTAACA-TTCT-T------CA---TA--TATATTTGTTTATGGACGTAATATCA---GAAATAAAGTTTAGGATTTTGAAAGAATAGATCGGAGAGAAGAGAAA-AAAAA----AAGGT-G-AAGAAGAAGA-T--TGTTTTTAGAA-AGAAAGGTAAATTAC------TCC--GCACTGTCACTTTATAGATTAA-ATTATTTT
gi|13 : tttgtgtgt---T--TTT------GTTTT--C--TTTTTTT-T---ATT---TCCATTGTAAATTCACATACAATTTATTCTTA-CATATATA----ATGCAATTTACA-ATCT-T------TA---TATATATATTTGTTTATGAACGTTATATCA---GAAATAAAGTTTAGGATTTTGACAGAATAGATCGAAGAGAAGAG--A-AACAAA--GAAAGT-A-AAGAAGAAGA----TTTTTTTAGAA-AGAAAGGTAAATTAC------TCC--ACACTGTCACTTTATAGATTAACCTT-TTT
gi|14 : TAAAACATGT---GT-AA---T--TTC------TTTTT----TTTTCTTT-T---TTT---TCCGTAGTACATTAATTTACATTTTACAATTA-CATACATG----CTACAGTTTACA-TTAT-T------TA---TT--CATATTTGTTTATGAACGCCTTTTTA---GAAAT-GAGTTTAGAATAAGGAAAGAATTGGTCGGAGAGAAG-------AAAAA--GAAAGT-GTAAG-------------TGTTTAGAAGAAAAAAGTAAATTAT------CTC--ACACTGTCAGTTCAAAGATT
gi|15 : gtTT------TTTAT--TATTTTGTTT-T---ATT---TTCATTTTACATTCACATACAATTTATTATTA-CATACATA----ATGCAATTTACA-ATCT-T------CA---GA--TATATTTGTTTATGAACGTAATATCA---GAAATAAAGTTTACGATTTTGACACAATAGGTCGGAGAGAAGAG----AATAAA--GAAGGT-G-AAGAATAAGATT--TTTGTTTAGAA-AGAAAGGTAAATTAC------TTC--ACACTGTCACTTTATAGATTAAC
gi|16 : TATATAGATAAC-------ACTTGTT--T--GTTTAAC-AGA-AAC--ACAACATGA--TACGT---GTATG---T--TTT------TTCTC--CATTTT----------------CCATAGTACATTCATATACAATTTACAATGA-CATAAATA----ATACAATTTACA-TTCT-T------TA---TT--TATATTTGTTTGTGAATGCATTATTA---GAAATACAATTGAGGATTAGGAATGAATAGGTCGAAGAGAAGAG--A-AAAAAA--GAAGAT----AGAAGAGCATA--TTTT
gi|18 : TCATATACAATTTATAATTA-CATACATA----TTACAATTTACA-TTCT-TCATATTTA---TA--TATATTTGTTTATGACCGTATTATCAATAGCAACAAAGTTTAGGATTAGGACAGAATAGGTTGAAGAGAAGAGAAA-GAAGAA--aga
gi|19 : ttttccaaacagatattcaaaccttttttttcT---T--TTC------TTCTT----TTTTTTTT-T---ATT---TCCATAGTCTATTCACATACAATTTATTTTTT-CATACATA----ATGCTATTTACA-TTCT-T------CA---TA--TAAATTTGTTTATGAACGTAATATCA---GAAATAAAGTTTAGGATT
gi|2 : TGTTATATTGCTAACGAGAGACACATATCA-TACGGTTAACGAGATtt
gi|2 : TCCACATATTATATTGATAACGAGAG--ACA---CA-T--ATT-----ATATTGTTAACGA---GAGAGACAT---GT-TT---T--TTTGTTTTGTTTTT--CATTTTCTTT-----ATT---TCCATAGTACATTAACATACCATTTATTATTA-CACACATA----ATACAATGTATAATTCT-T------CA---TA--TATATTTGTTGATGAACGTGATATCA---GCAATAAAGTTTAGGATTGGGACAGAATAGGTCTGAG-GAAGAG-----AAACA--GAAGCT-G-AAG----CGCTTGATATTTTTAGAA-AGAATGGTTAATTAC------TTC--ACACTGTAACTTAATAGA-TAA-ATTATTTTATccacatattatattgataacgagagacacatattatattgttaacgagagagacatgtttttttgttttgtttttcattttctttatttccatagtacattaacataccatttattattacacacataatacaatgtataattcttcatatatatttgttgatgaacgtgatatcagcaataaagtttaggattgggacagaataggtctgaggaagagaaacagaagctgaagcgcttgatatttttagaaagaatggttaattacttcacactgtaacttaatagataaattattttatc
gi|20 : tgttatattgctaacgagagacacatatcatacggttaacgagaT--TATTTTTTTT-T---ATTATTTCCGTAGTACATTCATAT----TTTATGATTA-AATACATA----ATACAATTAACA-TTTT-T------TA---T---TATACTTGTTTATAAACGCATTATTA---GAAc
gi|3 : aATATTGTGTTGATAATGAACG--A-ATG--A-T--G--------GGCTTTTAA-AATA---AATTC-T---AT-TT---TATTTTG-----TTTTT--C--TTTTTTT-T---ATT---TTCATAGTAAAATCTCATACAATTTACAATTA-CATACATAATTTATACAAATTACA-TTAT-T---------------TATACTTGTTTATGAATGTATTCTTA---GAAACAAA------GATTACAACAGAATAGGTCGGAGAGAAG
gi|4 : aaagaaacaatattttatataataataataatataaacagcgtaaattggactgaattgagtgtttcaagtgttttcaggtatttttatcgcggtagataaattgaacagATTATTAACTGTAAGCAATACAT---GT-TTAGGT--GTT------TGCTTAACATATTTTTT-T-----T---TTCATAGTACAGTCATATACAATTTATAATAA-CATACATA----ATACAACTTATA-TTCT-C------TA---TC--TATATTCCTTTATAAATACATTATAA---GAAATACATTTTAAGACTAGGACAGAATAGGTCGGAAGGAAGAG------AACA--TAAGGTAG-AAGAACAGAA----TATTCTTAGAA-AGAAAGGTTAATTAC------TTC--ACACCGCCACAGCTCAGATTAAAATTATTT
gi|5 : cttttattcactagcatcgatggtagaacctagcgtaT---T--TCG------TTTTT--CATTTTTTT------ATT---TTCATATAACATTCGTATACAATTTA-CATTAACATACATG----TTGCAAGCTATA-TTCT-TCT----TT---TT--TAAAATTGTTTATGAACGCCTTATTA---GAAATTA-GTTTAGGATTAGGACAGAATTGGTCAGAGAGAAAAGAAA-GAAAGAACGAA-GT-A-GAGCA-AAG------TTCTTTAG---AGAAAAGTAGATTAC------TTCAAAAACTGTCATTTTAAAGAATAAAACTAGTTac
gi|6 : gttgataacagaatttatatttttattgttaggaaacacacattggtgagctagataT---AT-CT---T--TTA------TTCCC--CATTTTTTGT-T---ATT---TCCATAGAACATTCATATACAATTTACATTTA-CATATATA----ATGCAAGCTATA-TTCT-C------TCCTTTT--TATAATTGTTTATGAAAGCATTATCG---GAAAT-AAGTTTAGGATAAGGACAGAATAGGTCAGAGAGAAGAGAAAGAAAGAA--GGAAGT----AGAGCAAAGTT--CTT-----GAG-AGAAAAGTAGATTAC------CTCAAAAACTGTCa
gi|7 : tttacggaatacgcttatatgttgctagtatcgataaaacacgagtatgacactcgaaagaatgcttggtGAT-TGAACTATGTTCGGT-GA---C--TTT------TTTTT--CATTTTTTTT-TTGTATT---TTCGTAGTACATTCACATACAATTTATAATTA-GATACATA----CTACAATTTACA-TTCT-T------CA---TA--TATTTTTTATTATGAACGTATAATCA---GAAATAATGTTTAGGATTAGGACAGAATAGGTTGGAGTGAAGAG-----AAAAA--GAAGAT----AGAAGAGCAAT--ATTTTTTAAAA-AGAAAGGTAAATTAC------TCC--ACACTTTCTTTTTATTGATCAAtt
gi|8 : ttaaaatgT-T---ATT---TCCATCGAATATTCACATACAATGTATAATTA-CATACATA----ATACAATTTACA-TTCT-T------AAT--TT--TATATTTGTTTATGAATGCATT---A---AAAATAAAGTTTAGGATAAGAAAAGAATGGGTCGAAGAGAAGAG-----AAACA--GAAGTTAG-AAGAGTAAGATA--CTTTT---GAA-AGAAAGCTAAACTAC------GTC--ACATTGTCATTGAAAAGATCAGAATTATTTatct
gi|9 : aaacacttactgcagtacaatgtagttttgttatacgtgtg-TT---T--TTA------TTTTC--CATTTTTTTT-A---ATT---TCCTTAATACATTCACATACAATTTATTATTA-CATACATA----ATGCAATTTACA-ATCT-T------CA---TA--TATAATTGTTTATGAACGTAATATCA---GAAATAAAGTTTAGGATTTTGACAGAATTGGTCAGAGAGAAGAG--A-AAAAAA--GAAGGT-G-AAGAGGAAGA----TATTTTTAGAA-A-AAAGGTAAATTACCTGAAACCC--ACACTGTCACTTTATAGATTAA-ATTATTTTAgtc
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|17 ): TTTTTTTATTTTTTTTTTTATTATTATTTCATAATACATACATATTGCAAATATATTTGATATAATACATACAGTTTACTTTTTTATATGAATGTATTCTATGAAACAATGTAACGGTAAGAAAAGACAGGGAAAGAAAGTAGAAAAAGGAAAAAAGACGTGGATAGAAGGAAAAGAGACC
Alignments
lowQualScore : 11 333333333333333 111 11111111 111111 111111111111111 33333 111 11111 1
lowQualScore : 6 0 3 33 11 0 222222222222222 000 77777777 0 5 777 3 555 33 000000 33 0 666666 333 1 2 4444 2 2 333333333333333 1 333 11 11111 33 333 4 0 55555 1 2 888888 77 0 0 5
lowQualScore : . . . .. .. . ............... ... ........ . . ... . ... .. ...... .. . ...... ... . . .... . . ............... . ... .. ..... .. ... . . ..... . . ...... .. . . .
lowQualScore : 0 8 2 88 00 8 000000000000000 777 11111111 1 4 000 6 000 99 333333 44 1 777777 999 0 1 5555 1 1 444444444444444 9 777 44 99999 44 555 4 5 33333 7 9 222222 99 2 5 7
consensus : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCCGCATATTATATTGATAACGAGAG--ACATGTCA-T--GTTTAAC-AGATTATTAACG--ATATGAAATACGT---GT-TT---T--TTT------TTTTT--CATTTTTTTT-T---ATT---TCCATAGTACATTCACATACAATTTATNATTA-CATACATA----ATGCAATTTACA-TTCT-T------TA---TA--TATATTTGTTTATGAACGTATTATCA---GAAATAAAGTTTAGGATTAGGACAGAATAGGTCGGAGAGAAGAGAAA-AAAAAA--GAAGGT-G-AAGAAGAAGATT--TTTTTTTAGAA-AGAAAGGTAAATTAC------TCC--ACACTGTCACTTTATAGATTAACATTATTTTAT
Reference ( family-1561 ) : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCCGCATATTATATTGATAACGAGAG--ACATGTCA-T--GTTTAAC-AGATTATTAACG--ATATGAAATACGT---GT-TT---T--TTT------TTTTT--CATTTTTTTT-T---ATT---TCCATAGTACATTCACATACAATTTATNATTA-CATACATA----ATGCAATTTACA-TTCT-T------TA---TA--TATATTTGTTTATGAACGTATTATCA---GAAATAAAGTTTAGGATTAGGACAGAATAGGTCGGAGAGAAGAGAAA-AAAAAA--GAAGGT-G-AAGAAGAAGATT--TTTTTTTAGAA-AGAAAGGTAAATTAC------TCC--ACACTGTCACTTTATAGATTAACATTATTTTAT
gi|1 : TCTGCATATTATAT-GATA-TAACAG--ACATGCCAGT--GTTTAAA-AGAGAATTGAAG--ATATGAAATATAT---GT-TT---T--TTT------TCTTT--CATTTTTTTTAT---ATT---TCCATAGTACATTCACATACAATTTATTATTA-CATACATA----ATGCAATTTACA-ATCT-T------TA---TA--TATATTTGTTTATGAACGTAATATTA---GAAATAAAGATTAGGATTTTGAGAGAATAGGTCGGAGAGATGAGAAA-AAAAAA--GAAAGT-G-AAGAAGAAGATT--TTTTTTTAGAA-AGAAAGGTAAATTTC------TCC--ACACTGTCACTTTATAGATTAACATC-TTTTAT
gi|10 : aaggaaaacaatattttgtttaatgttattaacagataacggatatctgaaaatatgTACTT---GG-TA---T--TTT------TTTTT--TATTTTCATT-T----CT---TCC-TAGTACGTTCAAATACAATTTACAATTA-CATACTGA----ATACAAGCTGCA-TTTTGT------TG---T-----------TTTATGAAAGTCTTATTA---GAAATAC-GTTTAGAATTAGGACAGAAAAGGTCAGAGAAAAGAAAAA-AACGAA--GGAAGT----AGACAAAGATT--TTT-----GAA-AGA-----AAATTAT------TTG--TTGCTGTCATTTCAAATAATAACATTATTTTA
gi|11 : aaatatcattgT---AT-TT---T--TTG------TTTTT--CAATCTTTTA-----ATT---TCCATAGTACATTCACATACAATTTATTATTA-CATACATA----ATGCAATTTACA-ATCT-T------AA---TA--TATATTTGTTTATGAACGTAATATCA---GAAATAAAGTTTAGGATTTTGACAGAATAGGTCGGAGAAAAGAG-----AATAT--GAAAGT-G-AAGAAGA--TTT--TTTTTTTAAAA-AGAAAGGTAAATTAC------TCC--ACACTGTCACTTTATAGATTAACATT-TTTTATctta
gi|12 : tTTTTTGTT-T---GTT---TCCGTAGGACATTCACAAACAATTTATTATTA-TAAACATA----ATATAATTAACA-TTCT-T------CA---TA--TATATTTGTTTATGGACGTAATATCA---GAAATAAAGTTTAGGATTTTGAAAGAATAGATCGGAGAGAAGAGAAA-AAAAA----AAGGT-G-AAGAAGAAGA-T--TGTTTTTAGAA-AGAAAGGTAAATTAC------TCC--GCACTGTCACTTTATAGATTAA-ATTATTTT
gi|13 : tttgtgtgt---T--TTT------GTTTT--C--TTTTTTT-T---ATT---TCCATTGTAAATTCACATACAATTTATTCTTA-CATATATA----ATGCAATTTACA-ATCT-T------TA---TATATATATTTGTTTATGAACGTTATATCA---GAAATAAAGTTTAGGATTTTGACAGAATAGATCGAAGAGAAGAG--A-AACAAA--GAAAGT-A-AAGAAGAAGA----TTTTTTTAGAA-AGAAAGGTAAATTAC------TCC--ACACTGTCACTTTATAGATTAACCTT-TTT
gi|14 : TAAAACATGT---GT-AA---T--TTC------TTTTT----TTTTCTTT-T---TTT---TCCGTAGTACATTAATTTACATTTTACAATTA-CATACATG----CTACAGTTTACA-TTAT-T------TA---TT--CATATTTGTTTATGAACGCCTTTTTA---GAAAT-GAGTTTAGAATAAGGAAAGAATTGGTCGGAGAGAAG-------AAAAA--GAAAGT-GTAAG-------------TGTTTAGAAGAAAAAAGTAAATTAT------CTC--ACACTGTCAGTTCAAAGATT
gi|15 : gtTT------TTTAT--TATTTTGTTT-T---ATT---TTCATTTTACATTCACATACAATTTATTATTA-CATACATA----ATGCAATTTACA-ATCT-T------CA---GA--TATATTTGTTTATGAACGTAATATCA---GAAATAAAGTTTACGATTTTGACACAATAGGTCGGAGAGAAGAG----AATAAA--GAAGGT-G-AAGAATAAGATT--TTTGTTTAGAA-AGAAAGGTAAATTAC------TTC--ACACTGTCACTTTATAGATTAAC
gi|16 : TATATAGATAAC-------ACTTGTT--T--GTTTAAC-AGA-----AACACAACATGA--TACGT---GTATG---T--TTT------TTCTC--CATTTT----------------CCATAGTACATTCATATACAATTTACAATGA-CATAAATA----ATACAATTTACA-TTCT-T------TA---TT--TATATTTGTTTGTGAATGCATTATTA---GAAATACAATTGAGGATTAGGAATGAATAGGTCGAAGAGAAGAG--A-AAAAAA--GAAGAT----AGAAGAGCATA--TTTT
gi|18 : TCATATACAATTTATAATTA-CATACATA----TTACAATTTACA-TTCT-TCATATTTA---TA--TATATTTGTTTATGACCGTATTATCAATAGCAACAAAGTTTAGGATTAGGACAGAATAGGTTGAAGAGAAGAGAAA-GAAGAA--aga
gi|19 : ttttccaaacagatattcaaaccttttttttcT---T--TTC------TTCTT----TTTTTTTT-T---ATT---TCCATAGTCTATTCACATACAATTTATTTTTT-CATACATA----ATGCTATTTACA-TTCT-T------CA---TA--TAAATTTGTTTATGAACGTAATATCA---GAAATAAAGTTTAGGATT
gi|2 : TGTTATATTGCTAACGAGAGACACATATCA-TACGGTTAACGAGATtt
gi|2 : TCCACATATTATATTGATAACGAGAG--ACA---CA-T--ATT-----ATATTGTTAACG--A---GAGAGACAT---GT-TT---T--TTTGTTTTGTTTTT--CATTTTCTTT-----ATT---TCCATAGTACATTAACATACCATTTATTATTA-CACACATA----ATACAATGTATAATTCT-T------CA---TA--TATATTTGTTGATGAACGTGATATCA---GCAATAAAGTTTAGGATTGGGACAGAATAGGTCTGAG-GAAGAG-----AAACA--GAAGCT-G-AAG----CGCTTGATATTTTTAGAA-AGAATGGTTAATTAC------TTC--ACACTGTAACTTAATAGA-TAA-ATTATTTTATccacatattatattgataacgagagacacatattatattgttaacgagagagacatgtttttttgttttgtttttcattttctttatttccatagtacattaacataccatttattattacacacataatacaatgtataattcttcatatatatttgttgatgaacgtgatatcagcaataaagtttaggattgggacagaataggtctgaggaagagaaacagaagctgaagcgcttgatatttttagaaagaatggttaattacttcacactgtaacttaatagataaattattttatc
gi|20 : tgttatattgctaacgagagacacatatcatacggttaacgagaT--TATTTTTTTT-T---ATTATTTCCGTAGTACATTCATAT----TTTATGATTA-AATACATA----ATACAATTAACA-TTTT-T------TA---T---TATACTTGTTTATAAACGCATTATTA---GAAc
gi|3 : aATATTGTGTTGATAATGAACG--A-ATG--A-T--G--------GGCTTTTAA-A--ATA---AATTC-T---AT-TT---TATTTTG-----TTTTT--C--TTTTTTT-T---ATT---TTCATAGTAAAATCTCATACAATTTACAATTA-CATACATAATTTATACAAATTACA-TTAT-T---------------TATACTTGTTTATGAATGTATTCTTA---GAAACAAA------GATTACAACAGAATAGGTCGGAGAGAAG
gi|4 : aaagaaacaatattttatataataataataatataaacagcgtaaattggactgaattgagtgtttcaagtgttttcaggtatttttatcgcggtagataaattgaacagATTATTAACT--GTAAGCAATACAT---GT-TTAGGT--GTT------TGCTTAACATATTTTTT-T-----T---TTCATAGTACAGTCATATACAATTTATAATAA-CATACATA----ATACAACTTATA-TTCT-C------TA---TC--TATATTCCTTTATAAATACATTATAA---GAAATACATTTTAAGACTAGGACAGAATAGGTCGGAAGGAAGAG------AACA--TAAGGTAG-AAGAACAGAA----TATTCTTAGAA-AGAAAGGTTAATTAC------TTC--ACACCGCCACAGCTCAGATTAAAATTATTT
gi|5 : cttttattcactagcatcgatggtagaacctagcgtaT---T--TCG------TTTTT--CATTTTTTT------ATT---TTCATATAACATTCGTATACAATTTA-CATTAACATACATG----TTGCAAGCTATA-TTCT-TCT----TT---TT--TAAAATTGTTTATGAACGCCTTATTA---GAAATTA-GTTTAGGATTAGGACAGAATTGGTCAGAGAGAAAAGAAA-GAAAGAACGAA-GT-A-GAGCA-AAG------TTCTTTAG---AGAAAAGTAGATTAC------TTCAAAAACTGTCATTTTAAAGAATAAAACTAGTTac
gi|6 : gttgataacagaatttatatttttattgttaggaaacacacattggtgagctagataT---AT-CT---T--TTA------TTCCC--CATTTTTTGT-T---ATT---TCCATAGAACATTCATATACAATTTACATTTA-CATATATA----ATGCAAGCTATA-TTCT-C------TCCTTTT--TATAATTGTTTATGAAAGCATTATCG---GAAAT-AAGTTTAGGATAAGGACAGAATAGGTCAGAGAGAAGAGAAAGAAAGAA--GGAAGT----AGAGCAAAGTT--CTT-----GAG-AGAAAAGTAGATTAC------CTCAAAAACTGTCa
gi|7 : tttacggaatacgcttatatgttgctagtatcgataaaacacgagtatgacactcgaaagaatgcttggtG--AT-TGAACTATGTTCGGT-GA---C--TTT------TTTTT--CATTTTTTTT-TTGTATT---TTCGTAGTACATTCACATACAATTTATAATTA-GATACATA----CTACAATTTACA-TTCT-T------CA---TA--TATTTTTTATTATGAACGTATAATCA---GAAATAATGTTTAGGATTAGGACAGAATAGGTTGGAGTGAAGAG-----AAAAA--GAAGAT----AGAAGAGCAAT--ATTTTTTAAAA-AGAAAGGTAAATTAC------TCC--ACACTTTCTTTTTATTGATCAAtt
gi|8 : ttaaaatgT-T---ATT---TCCATCGAATATTCACATACAATGTATAATTA-CATACATA----ATACAATTTACA-TTCT-T------AAT--TT--TATATTTGTTTATGAATGCATT---A---AAAATAAAGTTTAGGATAAGAAAAGAATGGGTCGAAGAGAAGAG-----AAACA--GAAGTTAG-AAGAGTAAGATA--CTTTT---GAA-AGAAAGCTAAACTAC------GTC--ACATTGTCATTGAAAAGATCAGAATTATTTatct
gi|9 : aaacacttactgcagtacaatgtagttttgttatacgtgtg-TT---T--TTA------TTTTC--CATTTTTTTT-A---ATT---TCCTTAATACATTCACATACAATTTATTATTA-CATACATA----ATGCAATTTACA-ATCT-T------CA---TA--TATAATTGTTTATGAACGTAATATCA---GAAATAAAGTTTAGGATTTTGACAGAATTGGTCAGAGAGAAGAG--A-AAAAAA--GAAGGT-G-AAGAGGAAGA----TATTTTTAGAA-A-AAAGGTAAATTACCTGAAACCC--ACACTGTCACTTTATAGATTAA-ATTATTTTAgtc
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|17 ): TTTTTTTATTTTTTTTTTTATTATTATTTCATAATACATACATATTGCAAATATATTTGATATAATACATACAGTTTACTTTTTTATATGAATGTATTCTATGAAACAATGTAACGGTAAGAAAAGACAGGGAAAGAAAGTAGAAAAAGGAAAAAAGACGTGGATAGAAGGAAAAGAGACC
Alignments
lowQualScore : 11 333333333333333 111 11111111 111111 111111111111111 33333 111 11111 1
lowQualScore : 6 0 3 33 11 0 222222222222222 000 77777777 0 5 777 3 555 33 000000 33 0 666666 333 1 2 4444 2 2 333333333333333 1 333 11 11111 33 333 4 0 55555 1 2 888888 77 0 0 5
lowQualScore : . . . .. .. . ............... ... ........ . . ... . ... .. ...... .. . ...... ... . . .... . . ............... . ... .. ..... .. ... . . ..... . . ...... .. . . .
lowQualScore : 0 8 2 88 00 8 000000000000000 777 11111111 1 4 000 6 000 99 333333 44 1 777777 999 0 1 5555 1 1 444444444444444 9 777 44 99999 44 555 4 5 33333 7 9 222222 99 2 5 7
consensus : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCCGCATATTATATTGATAACGAGAG--ACATGTCA-T--GTTTAAC-AGATTATTAACG--ATATGAAATACGT---GT-TT---T--TTT------TTTTT--CATTTTTTTT-T---ATT---TCCATAGTACATTCACATACAATTTATNATTA-CATACATA----ATGCAATTTACA-TTCT-T------TA---TA--TATATTTGTTTATGAACGTATTATCA---GAAATAAAGTTTAGGATTAGGACAGAATAGGTCGGAGAGAAGAGAAA-AAAAAA--GAAGGT-G-AAGAAGAAGATT--TTTTTTTAGAA-AGAAAGGTAAATTAC------TCC--ACACTGTCACTTTATAGATTAACATTATTTTAT
Reference ( family-1561 ) : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCCGCATATTATATTGATAACGAGAG--ACATGTCA-T--GTTTAAC-AGATTATTAACG--ATATGAAATACGT---GT-TT---T--TTT------TTTTT--CATTTTTTTT-T---ATT---TCCATAGTACATTCACATACAATTTATNATTA-CATACATA----ATGCAATTTACA-TTCT-T------TA---TA--TATATTTGTTTATGAACGTATTATCA---GAAATAAAGTTTAGGATTAGGACAGAATAGGTCGGAGAGAAGAGAAA-AAAAAA--GAAGGT-G-AAGAAGAAGATT--TTTTTTTAGAA-AGAAAGGTAAATTAC------TCC--ACACTGTCACTTTATAGATTAACATTATTTTAT
gi|1 : TCTGCATATTATAT-GATA-TAACAG--ACATGCCAGT--GTTTAAA-AGAGAATTGAAG--ATATGAAATATAT---GT-TT---T--TTT------TCTTT--CATTTTTTTTAT---ATT---TCCATAGTACATTCACATACAATTTATTATTA-CATACATA----ATGCAATTTACA-ATCT-T------TA---TA--TATATTTGTTTATGAACGTAATATTA---GAAATAAAGATTAGGATTTTGAGAGAATAGGTCGGAGAGATGAGAAA-AAAAAA--GAAAGT-G-AAGAAGAAGATT--TTTTTTTAGAA-AGAAAGGTAAATTTC------TCC--ACACTGTCACTTTATAGATTAACATC-TTTTAT
gi|10 : aaggaaaacaatattttgtttaatgttattaacagataacggatatctgaaaatatgTACTT---GG-TA---T--TTT------TTTTT--TATTTTCATT-T----CT---TCC-TAGTACGTTCAAATACAATTTACAATTA-CATACTGA----ATACAAGCTGCA-TTTTGT------TG---T-----------TTTATGAAAGTCTTATTA---GAAATAC-GTTTAGAATTAGGACAGAAAAGGTCAGAGAAAAGAAAAA-AACGAA--GGAAGT----AGACAAAGATT--TTT-----GAA-AGA-----AAATTAT------TTG--TTGCTGTCATTTCAAATAATAACATTATTTTA
gi|11 : aaatatcattgT---AT-TT---T--TTG------TTTTT--CAATCTTTTA-----ATT---TCCATAGTACATTCACATACAATTTATTATTA-CATACATA----ATGCAATTTACA-ATCT-T------AA---TA--TATATTTGTTTATGAACGTAATATCA---GAAATAAAGTTTAGGATTTTGACAGAATAGGTCGGAGAAAAGAG-----AATAT--GAAAGT-G-AAGAAGA--TTT--TTTTTTTAAAA-AGAAAGGTAAATTAC------TCC--ACACTGTCACTTTATAGATTAACATT-TTTTATctta
gi|12 : tTTTTTGTT-T---GTT---TCCGTAGGACATTCACAAACAATTTATTATTA-TAAACATA----ATATAATTAACA-TTCT-T------CA---TA--TATATTTGTTTATGGACGTAATATCA---GAAATAAAGTTTAGGATTTTGAAAGAATAGATCGGAGAGAAGAGAAA-AAAAA----AAGGT-G-AAGAAGAAGA-T--TGTTTTTAGAA-AGAAAGGTAAATTAC------TCC--GCACTGTCACTTTATAGATTAA-ATTATTTT
gi|13 : tttgtgtgt---T--TTT------GTTTT--C--TTTTTTT-T---ATT---TCCATTGTAAATTCACATACAATTTATTCTTA-CATATATA----ATGCAATTTACA-ATCT-T------TA---TATATATATTTGTTTATGAACGTTATATCA---GAAATAAAGTTTAGGATTTTGACAGAATAGATCGAAGAGAAGAG--A-AACAAA--GAAAGT-A-AAGAAGAAGA----TTTTTTTAGAA-AGAAAGGTAAATTAC------TCC--ACACTGTCACTTTATAGATTAACCTT-TTT
gi|14 : TAAAACATGT---GT-AA---T--TTC------TTTTT----TTTTCTTT-T---TTT---TCCGTAGTACATTAATTTACATTTTACAATTA-CATACATG----CTACAGTTTACA-TTAT-T------TA---TT--CATATTTGTTTATGAACGCCTTTTTA---GAAAT-GAGTTTAGAATAAGGAAAGAATTGGTCGGAGAGAAG-------AAAAA--GAAAGT-GTAAG-------------TGTTTAGAAGAAAAAAGTAAATTAT------CTC--ACACTGTCAGTTCAAAGATT
gi|15 : gtTT------TTTAT--TATTTTGTTT-T---ATT---TTCATTTTACATTCACATACAATTTATTATTA-CATACATA----ATGCAATTTACA-ATCT-T------CA---GA--TATATTTGTTTATGAACGTAATATCA---GAAATAAAGTTTACGATTTTGACACAATAGGTCGGAGAGAAGAG----AATAAA--GAAGGT-G-AAGAATAAGATT--TTTGTTTAGAA-AGAAAGGTAAATTAC------TTC--ACACTGTCACTTTATAGATTAAC
gi|16 : TATATAGATAAC-------ACTTGTT--T--GTTTAAC-AGA-----AACACAACATGA--TACGT---GTATG---T--TTT------TTCTC--CATTTT----------------CCATAGTACATTCATATACAATTTACAATGA-CATAAATA----ATACAATTTACA-TTCT-T------TA---TT--TATATTTGTTTGTGAATGCATTATTA---GAAATACAATTGAGGATTAGGAATGAATAGGTCGAAGAGAAGAG--A-AAAAAA--GAAGAT----AGAAGAGCATA--TTTT
gi|18 : TCATATACAATTTATAATTA-CATACATA----TTACAATTTACA-TTCT-TCATATTTA---TA--TATATTTGTTTATGACCGTATTATCAATAGCAACAAAGTTTAGGATTAGGACAGAATAGGTTGAAGAGAAGAGAAA-GAAGAA--aga
gi|19 : ttttccaaacagatattcaaaccttttttttcT---T--TTC------TTCTT----TTTTTTTT-T---ATT---TCCATAGTCTATTCACATACAATTTATTTTTT-CATACATA----ATGCTATTTACA-TTCT-T------CA---TA--TAAATTTGTTTATGAACGTAATATCA---GAAATAAAGTTTAGGATT
gi|2 : TGTTATATTGCTAACGAGAGACACATATCA-TACGGTTAACGAGATtt
gi|2 : TCCACATATTATATTGATAACGAGAG--ACA---CA-T--ATT-----ATATTGTTAACG--A---GAGAGACAT---GT-TT---T--TTTGTTTTGTTTTT--CATTTTCTTT-----ATT---TCCATAGTACATTAACATACCATTTATTATTA-CACACATA----ATACAATGTATAATTCT-T------CA---TA--TATATTTGTTGATGAACGTGATATCA---GCAATAAAGTTTAGGATTGGGACAGAATAGGTCTGAG-GAAGAG-----AAACA--GAAGCT-G-AAG----CGCTTGATATTTTTAGAA-AGAATGGTTAATTAC------TTC--ACACTGTAACTTAATAGA-TAA-ATTATTTTATccacatattatattgataacgagagacacatattatattgttaacgagagagacatgtttttttgttttgtttttcattttctttatttccatagtacattaacataccatttattattacacacataatacaatgtataattcttcatatatatttgttgatgaacgtgatatcagcaataaagtttaggattgggacagaataggtctgaggaagagaaacagaagctgaagcgcttgatatttttagaaagaatggttaattacttcacactgtaacttaatagataaattattttatc
gi|20 : tgttatattgctaacgagagacacatatcatacggttaacgagaT--TATTTTTTTT-T---ATTATTTCCGTAGTACATTCATAT----TTTATGATTA-AATACATA----ATACAATTAACA-TTTT-T------TA---T---TATACTTGTTTATAAACGCATTATTA---GAAc
gi|3 : aATATTGTGTTGATAATGAACG--A-ATG--A-T--G--------GGCTTTTAA-A--ATA---AATTC-T---AT-TT---TATTTTG-----TTTTT--C--TTTTTTT-T---ATT---TTCATAGTAAAATCTCATACAATTTACAATTA-CATACATAATTTATACAAATTACA-TTAT-T---------------TATACTTGTTTATGAATGTATTCTTA---GAAACAAA------GATTACAACAGAATAGGTCGGAGAGAAG
gi|4 : aaagaaacaatattttatataataataataatataaacagcgtaaattggactgaattgagtgtttcaagtgttttcaggtatttttatcgcggtagataaattgaacagATTATTAACT--GTAAGCAATACAT---GT-TTAGGT--GTT------TGCTTAACATATTTTTT-T-----T---TTCATAGTACAGTCATATACAATTTATAATAA-CATACATA----ATACAACTTATA-TTCT-C------TA---TC--TATATTCCTTTATAAATACATTATAA---GAAATACATTTTAAGACTAGGACAGAATAGGTCGGAAGGAAGAG------AACA--TAAGGTAG-AAGAACAGAA----TATTCTTAGAA-AGAAAGGTTAATTAC------TTC--ACACCGCCACAGCTCAGATTAAAATTATTT
gi|5 : cttttattcactagcatcgatggtagaacctagcgtaT---T--TCG------TTTTT--CATTTTTTT------ATT---TTCATATAACATTCGTATACAATTTA-CATTAACATACATG----TTGCAAGCTATA-TTCT-TCT----TT---TT--TAAAATTGTTTATGAACGCCTTATTA---GAAATTA-GTTTAGGATTAGGACAGAATTGGTCAGAGAGAAAAGAAA-GAAAGAACGAA-GT-A-GAGCA-AAG------TTCTTTAG---AGAAAAGTAGATTAC------TTCAAAAACTGTCATTTTAAAGAATAAAACTAGTTac
gi|6 : gttgataacagaatttatatttttattgttaggaaacacacattggtgagctagataT---AT-CT---T--TTA------TTCCC--CATTTTTTGT-T---ATT---TCCATAGAACATTCATATACAATTTACATTTA-CATATATA----ATGCAAGCTATA-TTCT-C------TCCTTTT--TATAATTGTTTATGAAAGCATTATCG---GAAAT-AAGTTTAGGATAAGGACAGAATAGGTCAGAGAGAAGAGAAAGAAAGAA--GGAAGT----AGAGCAAAGTT--CTT-----GAG-AGAAAAGTAGATTAC------CTCAAAAACTGTCa
gi|7 : tttacggaatacgcttatatgttgctagtatcgataaaacacgagtatgacactcgaaagaatgcttggtG--AT-TGAACTATGTTCGGT-GA---C--TTT------TTTTT--CATTTTTTTT-TTGTATT---TTCGTAGTACATTCACATACAATTTATAATTA-GATACATA----CTACAATTTACA-TTCT-T------CA---TA--TATTTTTTATTATGAACGTATAATCA---GAAATAATGTTTAGGATTAGGACAGAATAGGTTGGAGTGAAGAG-----AAAAA--GAAGAT----AGAAGAGCAAT--ATTTTTTAAAA-AGAAAGGTAAATTAC------TCC--ACACTTTCTTTTTATTGATCAAtt
gi|8 : ttaaaatgT-T---ATT---TCCATCGAATATTCACATACAATGTATAATTA-CATACATA----ATACAATTTACA-TTCT-T------AAT--TT--TATATTTGTTTATGAATGCATT---A---AAAATAAAGTTTAGGATAAGAAAAGAATGGGTCGAAGAGAAGAG-----AAACA--GAAGTTAG-AAGAGTAAGATA--CTTTT---GAA-AGAAAGCTAAACTAC------GTC--ACATTGTCATTGAAAAGATCAGAATTATTTatct
gi|9 : aaacacttactgcagtacaatgtagttttgttatacgtgtg-TT---T--TTA------TTTTC--CATTTTTTTT-A---ATT---TCCTTAATACATTCACATACAATTTATTATTA-CATACATA----ATGCAATTTACA-ATCT-T------CA---TA--TATAATTGTTTATGAACGTAATATCA---GAAATAAAGTTTAGGATTTTGACAGAATTGGTCAGAGAGAAGAG--A-AAAAAA--GAAGGT-G-AAGAGGAAGA----TATTTTTAGAA-A-AAAGGTAAATTACCTGAAACCC--ACACTGTCACTTTATAGATTAA-ATTATTTTAgtc
blockSeqs : A G GA AC TCATACGGTTAACG TTG CACAACAT T TCG A AGG AT GTTTTG AA TTGTA ATT A A ATTT A G CATATTTATA T ATA AG AAAGA AC GT A CTTGA T G CTGAAA AA C A
blockSeqs : T G GA . TTTGTTTAAC CTT CTGTAA G . . . . G . TG . T . . . . TCCTTTT A . TT AAAA . AG G ATT T . . AA C A
blockSeqs : T G AC . CATATT TTA AATA G . . . . . . TA . T . . . . TATATA A . TT AAAA . AG G TTT T . . . C A
blockSeqs : T . . . ATG . CGA A . . . . . . TT . T . . . . CTTTTT A . TT AAAG . G G ATT G . . . C A
blockSeqs : A . . . . . . TA . A . . . . AATTT T . AG AAAG . G T ATA G . . . A A
blockSeqs : G . . . . . . TA . T . . . . AATA A . TT AA . A G GTT T . . . A A
blockSeqs : . . . . . . . TA . A . . . . CATA T . AG AA . G C AAT T . . . A A
blockSeqs : . . . . . . TA . A . . . . TATT T . AG AA . G C ATA T . . . . .
blockSeqs : . . . . . . TA . T . . . . CAGA A . GG A . A G AT C . . . . .
blockSeqs : . . . . . TA . T . . . . TATT A . AC . . G T A T . . . .
blockSeqs : . . . . AA . G . . . . CATA T . AG . . . G A T . . .
blockSeqs : . . . . T . A . . . . CATA T . AG . . . . A T . . .
blockSeqs : . . . . A . A . . . . TATC T . AG . . . . . . . . .
blockSeqs : . . A . C . . . . CATA T . AG . . . . . .
blockSeqs : . T . A . . . . CATA T . AG . .
blockSeqs : A . A . . . . TGT T . TT
blockSeqs : . . A . . . . TAT T .
blockSeqs : T . . . . . A .
blockSeqCons : CTATTA********* CAA***** TA**** AA***
originalCons : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCCGCATATTATATTGATAACGAGAG--ACATGTCA-T--GTTTAAC-AGATTATTAACG--ATATGAAATACGT---GT-TT---T--TTT------TTTTT--CATTTTTTTT-T---ATT---TCCATAGTACATTCACATACAATTTATNATTA-CATACATA----ATGCAATTTACA-TTCT-T------TA---TA--TATATTTGTTTATGAACGTATTATCA---GAAATAAAGTTTAGGATTAGGACAGAATAGGTCGGAGAGAAGAGAAA-AAAAAA--GAAGGT-G-AAGAAGAAGATT--TTTTTTTAGAA-AGAAAGGTAAATTAC------TCC--ACACTGTCACTTTATAGATTAACATTATTTTAT
finalCons : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCCGCATATTATATTGATAACGAGAG--ACATGCTATTA---------AGATTATTAACAA-----GAAATACGT---GT-TT---T--TTT------TTTTT--CATTTTTTTTTA----TT---TCCATAGTACATTCACATACAATTTATNATTA-CATACATA----ATGCAATTTACA-TTCT-T------TA---TA--TATATTTGTTTATGAACGTATTATCA---GAAATAAAGTTTAGGATTAGGACAGAATAGGTCGGAGAGAAGAGAA---AAAAA--GAAGGT-G-AAGAAGAAGATT--TTTTTTTAGAA-AGAAAGGTAAATTAC------TCC--ACACTGTCACTTTATAGATTAACATTATTTTAT
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|17 ): TTTTTTTATTTTTTTTTTTATTATTATTTCATAATACATACATATTGCAAATATATTTGATATAATACATACAGTTTACTTTTTTATATGAATGTATTCTATGAAACAATGTAACGGTAAGAAAAGACAGGGAAAGAAAGTAGAAAAAGGAAAAAAGACGTGGATAGAAGGAAAAGAGACC
Alignments
lowQualScore : 7777777777777 333333333 111111 111111111111111 1 111111111 1
lowQualScore : 3 3 0 2 4444444444444 0 1 333333333 5 3 555 33 000000 33 0 66666 333 1 2 4444 2 2 333333333333333 1 333 0 11 33 3 33 0 999 1 888888888 1 1 2 888888 77 0 0 5
lowQualScore : . . . . ............. . . ......... . . ... .. ...... .. . ..... ... . . .... . . ............... . ... . .. .. . .. . ... . ......... . . . ...... .. . . .
lowQualScore : 2 2 2 5 7777777777777 8 2 222222222 4 6 000 99 333333 44 1 77777 999 0 1 5555 1 1 444444444444444 9 777 6 44 22 9 44 5 111 0 777777777 4 4 9 222222 99 2 5 7
consensus : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCCGCATATTATATTGATAACGAGAGACACG-CA----TTAG--GATTATTAAC---GA---GAAATACGTGT-TT---T--TTT------TTTTT--CATTTTTTTT---TATT---TCCATAGTACATTCACATACAATTTATNATTA-CATACATA----ATGCAATTTACA-TTCT-T------TA---TA--TATATTTGTTTATGAACGTATTATCA---GAAATAAAGTTTAGGATTAGGACAGAATAGGTCGGAGAGA--AGAGAAAAA--AAGAAGGT-G-AAGAAGA--AGATT--TTTTTTTAGAA-AGAAAGGTAAATTAC------TCC--ACACTGTCACTTTATAGATTAACATTATTTTAT
Reference ( family-1561 ) : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCCGCATATTATATTGATAACGAGAGACATGCTA----TTAA--GATTATTAAC---AA---GAAATACGTGT-TT---T--TTT------TTTTT--CATTTTTTTT---TATT---TCCATAGTACATTCACATACAATTTATNATTA-CATACATA----ATGCAATTTACA-TTCT-T------TA---TA--TATATTTGTTTATGAACGTATTATCA---GAAATAAAGTTTAGGATTAGGACAGAATAGGTCGGAGAGA--AGAGAAAAA--AAGAAGGT-G-AAGAAGA--AGATT--TTTTTTTAGAA-AGAAAGGTAAATTAC------TCC--ACACTGTCACTTTATAGATTAACATTATTTTAT
gi|1 : TCTGCATATTATAT-GATA-TAACAGACATGCCAGTGTTTAAAAGAGAATTGAA---GATATGAAATATATGT-TT---T--TTT------TCTTT--CATTTTTTTTA--TATT---TCCATAGTACATTCACATACAATTTATTATTA-CATACATA----ATGCAATTTACA-ATCT-T------TA---TA--TATATTTGTTTATGAACGTAATATTA---GAAATAAAGATTAGGATTTTGAGAGAATAGGTCGGAGAGATGAGAAAAAAA--AAGAAAGT-G-AAGAAGA--AGATT--TTTTTTTAGAA-AGAAAGGTAAATTTC------TCC--ACACTGTCACTTTATAGATTAACATC-TTTTAT
gi|10 : aaggaaaacaatattttgtttaatgttattaacagataacggatatctgaaaatatgTACTTGG-TA---T--TTT------TTTTT--TATTTTCATT---T-CT---TCC-TAGTACGTTCAAATACAATTTACAATTA-CATACTGA----ATACAAGCTGCA-TTTTGT------TG---T-----------TTTATGAAAGTCTTATTA---GAAATAC-GTTTAGAATTAGGACAGAAAAGGTCAGAGAAA--AGAAAAAAACGAAGGAAGT----AGACAA--AGATT--TTT-----GAA-AGA-----AAATTAT------TTG--TTGCTGTCATTTCAAATAATAACATTATTTTA
gi|11 : aaatatcattgTAT-TT---T--TTG------TTTTT--CAATCTTTTA----ATT---TCCATAGTACATTCACATACAATTTATTATTA-CATACATA----ATGCAATTTACA-ATCT-T------AA---TA--TATATTTGTTTATGAACGTAATATCA---GAAATAAAGTTTAGGATTTTGACAGAATAGGTCGGAGAAA--AGAG--AAT--ATGAAAGT-G-AAGAAGA----TTT--TTTTTTTAAAA-AGAAAGGTAAATTAC------TCC--ACACTGTCACTTTATAGATTAACATT-TTTTATctta
gi|12 : tTTTTTGTT---TGTT---TCCGTAGGACATTCACAAACAATTTATTATTA-TAAACATA----ATATAATTAACA-TTCT-T------CA---TA--TATATTTGTTTATGGACGTAATATCA---GAAATAAAGTTTAGGATTTTGAAAGAATAGATCGGAGAGA--AGAGAAAAA--AAAAAGGT-G-AAGAAGA--AGA-T--TGTTTTTAGAA-AGAAAGGTAAATTAC------TCC--GCACTGTCACTTTATAGATTAA-ATTATTTT
gi|13 : tttgtgtgt---T--TTT------GTTTT--C--TTTTTTT---TATT---TCCATTGTAAATTCACATACAATTTATTCTTA-CATATATA----ATGCAATTTACA-ATCT-T------TA---TATATATATTTGTTTATGAACGTTATATCA---GAAATAAAGTTTAGGATTTTGACAGAATAGATCGAAGAGA--AGAGAAACA--AAGAAAGT-A-AAGAAGA--AGA----TTTTTTTAGAA-AGAAAGGTAAATTAC------TCC--ACACTGTCACTTTATAGATTAACCTT-TTT
gi|14 : AAACATGTGT-AA---T--TTC------TTTTT----TTTTCTTT---TTTT---TCCGTAGTACATTAATTTACATTTTACAATTA-CATACATG----CTACAGTTTACA-TTAT-T------TA---TT--CATATTTGTTTATGAACGCCTTTTTA---GAAATGA-GTTTAGAATAAGGAAAGAATTGGTCGGAGAGA--AGA----AA--AAGAAAGT-GTAAG---------------TGTTTAGAAGAAAAAAGTAAATTAT------CTC--ACACTGTCAGTTCAAAGATT
gi|15 : gttaTT------TTTAT--TATTTTGTTT---TATT---TTCATTTTACATTCACATACAATTTATTATTA-CATACATA----ATGCAATTTACA-ATCT-T------CA---GA--TATATTTGTTTATGAACGTAATATCA---GAAATAAAGTTTACGATTTTGACACAATAGGTCGGAGAGA--AGAG-AATA--AAGAAGGT-G-AAGAATA--AGATT--TTTGTTTAGAA-AGAAAGGTAAATTAC------TTC--ACACTGTCACTTTATAGATTAAC
gi|16 : ATACGTGTATG---T--TTT------TTCTC--CATTTT---------------CCATAGTACATTCATATACAATTTACAATGA-CATAAATA----ATACAATTTACA-TTCT-T------TA---TT--TATATTTGTTTGTGAATGCATTATTA---GAAATACAATTGAGGATTAGGAATGAATAGGTCGAAGAGA--AGAGAAAAA--AAGAAGAT----AGAAGA--GCATA--TTTT
gi|18 : tatatagataacacttgtttgtttaacagaaacacaacatgTCATATACAATTTATAATTA-CATACATA----TTACAATTTACA-TTCT-TCATATTTA---TA--TATATTTGTTTATGACCGTATTATCAATAGCAACAAAGTTTAGGATTAGGACAGAATAGGTTGAAGAGA--AGAG-AAAG--AAGAAaga
gi|19 : ttttccaaacagatattcaaaccttttttttcT---T--TTC------TTCTT----TTTTTTTT---TATT---TCCATAGTCTATTCACATACAATTTATTTTTT-CATACATA----ATGCTATTTACA-TTCT-T------CA---TA--TAAATTTGTTTATGAACGTAATATCA---GAAATAAAGTTTAGGATT
gi|2 : TGTTATATTGCTAACGAGAGACAtt
gi|2 : TCCACATATTATATTGATAACGAGAGACACA-TA----TTA---TATTGTTAAC---GA---GAGAGACATGT-TT---T--TTTGTTTTGTTTTT--CATTTTCTTT----ATT---TCCATAGTACATTAACATACCATTTATTATTA-CACACATA----ATACAATGTATAATTCT-T------CA---TA--TATATTTGTTGATGAACGTGATATCA---GCAATAAAGTTTAGGATTGGGACAGAATAGGTCTGAG-GA--AGAG--AAA--CAGAAGCT-G-AAG------CGCTTGATATTTTTAGAA-AGAATGGTTAATTAC------TTC--ACACTGTAACTTAATAGA-TAA-ATTATTTTATcatatcatacggttaacgagatccacatattatattgataacgagagacacatattatattgttaacgagagagacatgtttttttgttttgtttttcattttctttatttccatagtacattaacataccatttattattacacacataatacaatgtataattcttcatatatatttgttgatgaacgtgatatcagcaataaagtttaggattgggacagaataggtctgaggaagagaaacagaagctgaagcgcttgatatttttagaaagaatggttaattacttcacactgtaacttaatagataaattattttatc
gi|20 : tgttatattgctaacgagagacacatatcatacggttaacgagaT--TATTTTTTTT---TATTATTTCCGTAGTACATTCATAT----TTTATGATTA-AATACATA----ATACAATTAACA-TTTT-T------TA---T---TATACTTGTTTATAAACGCATTATTA---GAAc
gi|3 : aATATTGTGTTGATAATGAACGA-ATG--A----T--G--GGCTTTTAA----AA---TAAATTC-TAT-TT---TATTTTG-----TTTTT--C--TTTTTTT---TATT---TTCATAGTAAAATCTCATACAATTTACAATTA-CATACATAATTTATACAAATTACA-TTAT-T---------------TATACTTGTTTATGAATGTATTCTTA---GAAACAAA------GATTACAACAGAATAGGTCGGAGAGA--AG
gi|4 : aaagaaacaatattttatataataataataatataaacagcgtaaattggactgaattgagtgtttcaagtgttttcaggtatttttatcgcggtagataaattgaacagATTATTAACTGTAA---GCAATACATGT-TTAGGT--GTT------TGCTTAACATATTTTTT---T--T---TTCATAGTACAGTCATATACAATTTATAATAA-CATACATA----ATACAACTTATA-TTCT-C------TA---TC--TATATTCCTTTATAAATACATTATAA---GAAATACATTTTAAGACTAGGACAGAATAGGTCGGAAGGA--AGAG---AA--CATAAGGTAG-AAGAACA--GAA----TATTCTTAGAA-AGAAAGGTTAATTAC------TTC--ACACCGCCACAGCTCAGATTAAAATTATTT
gi|5 : cttttattcactagcatcgatggtagaacctagcgtaT---T--TCG------TTTTT--CATTTTTTT-----ATT---TTCATATAACATTCGTATACAATTTA-CATTAACATACATG----TTGCAAGCTATA-TTCT-TCT----TT---TT--TAAAATTGTTTATGAACGCCTTATTA---GAAATTA-GTTTAGGATTAGGACAGAATTGGTCAGAGAGA--AAAGAAAGA--AAGAA--C-G-AAGTAGAGCAAAGT--TCTTT----AG-AGAAAAGTAGATTAC------TTCAAAAACTGTCATTTTAAAGAATAAAACTAGTTac
gi|6 : gttgataacagaatttatatttttattgttaggaaacacacattggtgagctagataTAT-CT---T--TTA------TTCCC--CATTTTTTGT---TATT---TCCATAGAACATTCATATACAATTTACATTTA-CATATATA----ATGCAAGCTATA-TTCT-C------TCCTTTT--TATAATTGTTTATGAAAGCATTATCG---GAAAT-AAGTTTAGGATAAGGACAGAATAGGTCAGAGAGA--AGAGAAAGA--AAGAAG---G-AAGTAGAGCAAAGT--TCTT----GAG-AGAAAAGTAGATTAC------CTCAAAAACTGTCa
gi|7 : tttacggaatacgcttatatgttgctagtatcgataaaacacgagtatgacactcgaaagaatgcttggtGTGA-CT---T--TTT--------TTT--CATTTTTTTTTTGTATT---TTCGTAGTACATTCACATACAATTTATAATTA-GATACATA----CTACAATTTACA-TTCT-T------CA---TA--TATTTTTTATTATGAACGTATAATCA---GAAATAATGTTTAGGATTAGGACAGAATAGGTTGGAGTGA--AGAG--AAA--AAGAAGAT----AGAAGA--GCAAT--ATTTTTTAAAA-AGAAAGGTAAATTAC------TCC--ACACTTTCTTTTTATTGATCAAtt
gi|8 : ttaaaatggattgaactatgttcgT---TATT---TCCATCGAATATTCACATACAATGTATAATTA-CATACATA----ATACAATTTACA-TTCT-T------AAT--TT--TATATTTGTTTATGAATGCATT---A---AAAATAAAGTTTAGGATAAGAAAAGAATGGGTCGAAGAGA--AGAG--AAA--CAGAAGTTAG-AAGAGTA--AGATA--CTTTT---GAA-AGAAAGCTAAACTAC------GTC--ACATTGTCATTGAAAAGATCAGAATTATTTatct
gi|9 : aaacacttactgcagtacaatgtagttttgttatacgtgtg-TT---T--TTA------TTTTC--CATTTTTTTT---AATT---TCCTTAATACATTCACATACAATTTATTATTA-CATACATA----ATGCAATTTACA-ATCT-T------CA---TA--TATAATTGTTTATGAACGTAATATCA---GAAATAAAGTTTAGGATTTTGACAGAATTGGTCAGAGAGA--AGAGAAAAA--AAGAAGGT-G-AAGAGGA--AGA----TATTTTTAGAA-A-AAAGGTAAATTACCTGAAACCC--ACACTGTCACTTTATAGATTAA-ATTATTTTAgtc
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|17 ): TTTTTTTATTTTTTTTTTTATTATTATTTCATAATACATACATATTGCAAATATATTTGATATAATACATACAGTTTACTTTTTTATATGAATGTATTCTATGAAACAATGTAACGGTAAGAAAAGACAGGGAAAGAAAGTAGAAAAAGGAAAAAAGACGTGGATAGAAGGAAAAGAGACC