lowQualScore                  :                                                                                                                                                 11111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111                                                                                                                                                                                                                       
lowQualScore                  :        2             1                             1         2                             1                                                    11111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111                                                                                  1              6666                                                                                    1                             
lowQualScore                  :        2             2                             3      5  0                             2                            3                 0 0 0 55555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555               99                         5   4    9           6   4     5        2              3333     6                                   5                        4             7 5 3  0  5      5                
lowQualScore                  :        .             .                             .      .  .                             .                            .                 . . . ..................................................................................................               ..                         .   .    .           .   .     .        .              ....     .                                   .                        .             . . .  .  .      .                
lowQualScore                  :        1             8                             8      0  0                             0                            5                 9 4 2 77777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777               99                         6   4    4           0   0     0        2              4444     0                                   0                        0             9 0 9  1  2      1                
consensus                     :   CCTTAACTACAAGTATAATGGGGAGCGCAATAGTTTAGGTAGCTCCCAGAACTTCC-AAATCCAGCGGTTAGTGTACAAACCCAAAGCGGGCGCATTATGTTCTTCGTGATTGTTATTTATGGTGACTGTTATTTTTATACANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTAAGCGACNNATGTGGGAAATACTTN-CCAGTGCCATGACCGAGGATCAAACCCGG-GACCCTGGAATACTAATCCAATGACA-CGACCACTGGACTTGGGCGCCAC----AATAACAATAGTCGTGCAATTCAAAACAATATATCGGTTAT-CAACCTAATATAGCAATTTATTACTATTTTGCTAAACAGG-CCACTGACTGATTTATTTCACTGTTATTTAT
Reference ( gi|1 )            :   CCTTATCTACAAGTATAATTGGGAGCGCAATAGTTTAGGTAGCTCCCAGTACTTCC-AA-TCCAGCGGTTAGTGTACAAACCCAAAGCGTGCGCATTATGTTCTTCGTGATTGTTATTTATGGTGACTGTTATTTTCATATANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATGTGGGAAATACTTT-CCAGTGCCATGACCGAGGATCAAACTCGG-GACCGTGGAATACTAACCCAGTGACA-CGACCACTTGACTTGGGCGCCACCGTGAATAAAAATAGTCGTGCAATTCAAAACAATATATCGGTTAT-CAACCTAATATAGCAATTTATTATCATTTTGCTAAACATG-CGACTGATTGATTTGTTTCACTGTTATTTAT
gi|2                          :   CCTTAACTACAAGTATAACGGGGAGCGCAATAGTTTAGGTAGTTCCCAGAACTTCC-AA-TCCAGCGGTTAGTGTACAAACCCAAAGCGGGCGCATTATGTTCTTCGTGATTGTTATTTATGGTGACTGTTATTTTCATATANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATGTGGGAAATACTTT-CCAGTGCCATGACCAAGGATCAAACCCGG-GACCCTGGAATACTAATCCAATGACAACGACCACTTGACTAGGGCGCCACCGTGAATAAAAATAATCGTGCAGTTCAATACAATATATAGGCTAT-CAACCTAATATAGCAATTTATTATCATTTTGCTAAAAATG-CCAC----TGATTTGTTTCACTGTTATTTAT
gi|5                          :   CCTGAACTATAAGTATAATGTGGAGTGCAATAGTATAGATAGCTCGTAGAAATTCC-AAATCCAGCAGTTAGTGTACAAACCCAAAGCGGGCGCATTATGTTATTCGTGATTGTTAT--ATGGTGACTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTAAGCGAC--ATGTGGGAAATACTTTTCCTGTGCCATGACCGAAGATCAAACCCGG-GACCCTGGAATACTAATCCAATGACA-CAACAACTGGACTTGTGCGCCAC----AGTAAAAATAGAGGAGCAATTCAAAACAATATATCAGTCAT-CAACCTAATATAGCAATTAATTATTCTTTTGCGTAACGGGTCAACTGATTCA----TTTCCCTGTTATTTAT
gi|6                          :   CTTTA-CTACAAGTATAATAGGGAGCGCAATAGTTTAGGTAGCTCCCAGAACTTCC-AA-TCCAGCGGTTAGTGTACAAACCCAAAGCGGGCGCATTATGTTCTTCGTGATTGTTATTTATGGTGGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGGTGGGAAATACTTT-CCAGTGCCATGACCGAAGATCAAAGCCGG-GATCCTGAAATAATAATCt
gi|12                         : gcCCTTAACTACAAGTATAATGGGGAGCGCAATAGTTTAGGTAGCTCCCAGTACTTCC-AA-TCCAGCGGTTAGTGTACAAACCCAAAGCGTGCGCATTATGTTCTTCGTGATT-TTATTGATGGT
gi|10                         :   gCTTAACTACAAGTATAATGGGGAGCGCAATAGTTTAGGTAGCTCCCAGAACTTCC-AAATCCAGCGGTTAGTGTACAAAACCAAAGAGGGCGCATTATATTTTTCGTAATTGTTATTTATGGTGACTGTTATTTTTATA
gi|4                          :     TTAACTACAAGTATAATGGGGAGCGCAATAGTTTAGGTAACTCCCAGAACTTCC-AAATTCAGCGGTTAGTGTACAAACCCAAAGCGGGCGCATTATATTCTTCTTGATTGTTATTTATTGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATGTGGGAAATACTTA-CCAATGCCATAACCGAGGATCAAACTCGG-GACCGTGGAATACTAATCCAGTGACA-CGACCACTGGACTTGGGCGCCAC----AATAACAATAGTCATGCAATTCAAAACAATATATCGGTTAT-CAACCTAATATAGCAATTTATTACTATTTTGCTAAACAGG-CCACTGACTGATTTATTTCACTGTTATCTAT
gi|3                          :     TTAACTATAAGCATAACTGGGAGCGCAGTAGTTTAGGAAGCTCCAAGATCTCCC-AAATCCAGCGATTAGTGTACAAACCAAATGCGGGCGCATTATATTTTTCGTGATTGTTACTAATGGTGACTGTTATTTTTAAACANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATGTGGGAAATACCTA-TCAATGCCATAACCGAGGATCAAACACGG-GACCCTGGAATACTAATCCAATGACA-CGACCACAGGACTTGGGCGTCAC----AATAACAATAGTCGTGCAATTCAAAACAATATATCGGTTAT-CAACCTAATTTAGCAATTTATTACTATTTTGCTAAACACG-CCACTGACTGATTTATTTCACTGTTATTTAT
gi|15                         :     TTA-CTACAAGTATAATGGGGAGCGCAATAGTTTAGGTAACTCCCAAAACTTCCAAA-TCCAGCTGTTAGTGTACAAACCCAAAGCGGGTGTAt
gi|14                         :    tTTAACTACAAGTATAATAGGGATCGCAGTAGTTTAGGTAGCTCatg
gi|7                          :                                                                                                  TTACGTTCTTCGTGATAGTTATTAGTGGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN--ATGTGGGAAACACTTT-CCAGTGCCATG-CAAAGCATCAAACCCGGCTTCTGTGGAATGCTTATCAAACTACA-CAATCACTATACTTGGGCGCCAC----AATGAAAATAGAGGTGGAATTCAGAACAATATtataagcatccctggttcatttacttcacatgcgaggtgtacaacaccgattgatgcg
gi|9                          :                                                                                                                                                                                                                                                   ATGTGAGAAATACTTA-CCAATGCCATTACCGAGGATCAAATCCGG-GACCCTGGAATACTTATCCAATGACA-CGACCACTGGACTTGGGCGCCAC----AATAACAGTAGTCGTGCAGTTCAAAACAATATATCGGCTAT-CAACCTAATATAGCAATTTATTATTATTTTGCTAAACAGG-CCACTGACTGATTTATTTCACTGTTATTTAT
gi|8                          :                                                                                                                                                                                                                                                gacATGTGGGAAATACTTA-TCAATGCCATAACCGAGGATCAAACCCGG-GACCCTGGAATACTAATCCAATGACA-CGACCACTGGACTTGGGCGCCACAGT-AACAACAATAGTCGTGCAATTTAAAACAATATATCGGCTAT-CACCCTAATATAGCAATTTATTACTATTTTGCTAAACAGG-TCACTGACTGATTTATTTCAGTGTTACTTATt
gi|13                         :                                                                                                                                                                                                                                                   ATGTGGCAAATACTTA-TCAATGCCATAACCGAGGATCAAACCCGG-GACCCTGAAATACTAATCCAATGACA-CGACCACTGGACTTGGGCGCCACt
gi|11                         :                                                                                                                                                                                                                                                                                                                          caccgattgatgcgacTGGGCGCCAC----AATAACAATAGTCGTGTAATTCAAAACAATATATCGGTTAT-CAACCTAATATAGCAATTTATTACTATTTTGCTAAACAGG-CCACTGACTGATTTATTTCCCTGTTAa
gi|16                         :                                                                                                                                                                                                                                                                                                                                                                                   AATATATACATTATACAGGGTAGTATAGCAATTTGTTATTATTTTGTAAAACATG-CCA---ACTGATTTATTTCACTGACATTTATgtgat





Alignments
lowQualScore                  :                                                                                                                                                       99999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999                                                                                                 1111                                                                                                                    
lowQualScore                  :                                                                    7                                                          2                     0 88888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888               55                                  4                     4                       7777     1 777                                  4                                      1    3                           
lowQualScore                  :                                                                    .                                                          .                     . ..................................................................................................               ..                                  .                     .                       ....     . ...                                  .                                      .    .                           
lowQualScore                  :                                                                    3                                                          1                     9 77777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777               00                                  0                     4                       0000     1 888                                  4                                      1    9                           
consensus                     :          CCTTAACTACAAGTATAATGGGGAGCGCAATAGTTTAGGTAGCTCCCAGAACTTCCAAATCCAGCGGTTAGTGTACAAACCCAAAGCGGGCGCATTATGTTCTTCGTGATTGTTATTTATGGTGACTGTTATTTTCATATANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTAAGCGAC--ATGTGGGAAATACTTN-CCAGTGCCATGACCGAGGATCAAACCCGGGACCC-TGGAATACTAATCCAATGACA-CGACCACTGGACTTGGGCGCCAC----AATAACA---ATAGTCGTGCAATTCAAAACAATATATCGGTTAT-CAACCTAATATAGCAATTTATTACTATTTTGCTAAACAGGCCACTGACTGATTTATTTCACTGTTATTTAT
Reference ( family-1469 )     :          CCTTAACTACAAGTATAATGGGGAGCGCAATAGTTTAGGTAGCTCCCAGAACTTCCAAATCCAGCGGTTAGTGTACAAACCCAAAGCGGGCGCATTATGTTCTTCGTGATTGTTATTTATGGTGACTGTTATTTTTATACANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTAAGCGACNNATGTGGGAAATACTTN-CCAGTGCCATGACCGAGGATCAAACCCGGGACCC-TGGAATACTAATCCAATGACA-CGACCACTGGACTTGGGCGCCAC----AATAACA---ATAGTCGTGCAATTCAAAACAATATATCGGTTAT-CAACCTAATATAGCAATTTATTACTATTTTGCTAAACAGGCCACTGACTGATTTATTTCACTGTTATTTAT
gi|1                          :          CCTTATCTACAAGTATAATTGGGAGCGCAATAGTTTAGGTAGCTCCCAGTACTTCCAA-TCCAGCGGTTAGTGTACAAACCCAAAGCGTGCGCATTATGTTCTTCGTGATTGTTATTTATGGTGACTGTTATTTTCATATANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATGTGGGAAATACTTT-CCAGTGCCATGACCGAGGATCAAACTCGGGACCG-TGGAATACTAACCCAGTGACA-CGACCACTTGACTTGGGCGCCACCGTGAATAAAA---ATAGTCGTGCAATTCAAAACAATATATCGGTTAT-CAACCTAATATAGCAATTTATTATCATTTTGCTAAACATGCGACTGATTGATTTGTTTCACTGTTATTTAT
gi|10                         :           CTTAACTACAAGTATAATGGGGAGCGCAATAGTTTAGGTAGCTCCCAGAACTTCCAAATCCAGCGGTTAGTGTACAAAACCAAAGAGGGCGCATTATATTTTTCGTAATTGTTATTTATGGTGACTGTTATTTTTATA
gi|11                         :                                                                                                                                                                                                                                                                                                                                                TGGGCGCCAC----AATAACA---ATAGTCGTGTAATTCAAAACAATATATCGGTTAT-CAACCTAATATAGCAATTTATTACTATTTTGCTAAACAGGCCACTGACTGATTTATTTCCCTGTTA
gi|12                         :          CCTTAACTACAAGTATAATGGGGAGCGCAATAGTTTAGGTAGCTCCCAGTACTTCC-AATCCAGCGGTTAGTGTACAAACCCAAAGCGTGCGCATTATGTTCTTCGTGATT-TTATTGATGGTgtgat
gi|13                         :                                                                                                                                                                                                                                                 gGCGAC--ATGTGGCAAATACTTA-TCAATGCCATAACCGAGGATCAAACCCGGGACCC-TGAAATACTAATCCAATGACA-CGACCACTGGACTTGGGCGCCAC----A
gi|14                         : caccgattgatTTAACTACAAGTATAATAGGGATCGCAGTAGTTTAGGTAGCTC
gi|15                         :            TTTACTACAAGTATAATGGGGAGCGCAATAGTTTAGGTAACTCCCAAAACTTCCAAATCCAGCTGTTAGTGTACAAACCCAAAGCGGGTGTAtataagcatccctggttcatttacttcacatgcgaggtgtacaacaccgattgatgcg
gi|16                         :                                                                                                                                                                                                                                                                                                                                                                                            AATATATACATTATACAGGGTAGTATAGCAATTTGTTATTATTTTGTAAAACATGCCA---ACTGATTTATTTCACTGACATTTATatg
gi|2                          :     atttaCCTTAACTACAAGTATAACGGGGAGCGCAATAGTTTAGGTAGTTCCCAGAACTTCCAA-TCCAGCGGTTAGTGTACAAACCCAAAGCGGGCGCATTATGTTCTTCGTGATTGTTATTTATGGTGACTGTTATTTTCATATANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATGTGGGAAATACTTT-CCAGTGCCATGACCAAGGATCAAACCCGGGACCC-TGGAATACTAATCCAATGACAACGACCACTTGACTAGGGCGCCACCGTGAATAAAA---ATAATCGTGCAGTTCAATACAATATATAGGCTAT-CAACCTAATATAGCAATTTATTATCATTTTGCTAAAAATGCC----ACTGATTTGTTTCACTGTTATTTATt
gi|3                          :            TTAACTATAAGCATAACTGGGAGCGCAGTAGTTTAGGAAGCTCCAAGATCTCCCAAATCCAGCGATTAGTGTACAAACCAAATGCGGGCGCATTATATTTTTCGTGATTGTTACTAATGGTGACTGTTATTTTTAAACANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATGTGGGAAATACCTA-TCAATGCCATAACCGAGGATCAAACACGGGACCC-TGGAATACTAATCCAATGACA-CGACCACAGGACTTGGGCGTCAC----AATAACA---ATAGTCGTGCAATTCAAAACAATATATCGGTTAT-CAACCTAATTTAGCAATTTATTACTATTTTGCTAAACACGCCACTGACTGATTTATTTCACTGTTATTTAT
gi|4                          :            TTAACTACAAGTATAATGGGGAGCGCAATAGTTTAGGTAACTCCCAGAACTTCCAAATTCAGCGGTTAGTGTACAAACCCAAAGCGGGCGCATTATATTCTTCTTGATTGTTATTTATTGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATGTGGGAAATACTTA-CCAATGCCATAACCGAGGATCAAACTCGGGACCG-TGGAATACTAATCCAGTGACA-CGACCACTGGACTTGGGCGCCAC----AATAACA---ATAGTCATGCAATTCAAAACAATATATCGGTTAT-CAACCTAATATAGCAATTTATTACTATTTTGCTAAACAGGCCACTGACTGATTTATTTCACTGTTATCTATt
gi|5                          :          CCTGAACTATAAGTATAATGTGGAGTGCAATAGTATAGATAGCTCGTAGAAATTCCAAATCCAGCAGTTAGTGTACAAACCCAAAGCGGGCGCATTATGTTATTCGTGATTGTTAT--ATGGTGACTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTAAGCGAC--ATGTGGGAAATACTTTTCCTGTGCCATGACCGAAGATCAAACCCGGGACCC-TGGAATACTAATCCAATGACA-CAACAACTGGACTTGTGCGCCAC----AGTAAAA---ATAGAGGAGCAATTCAAAACAATATATCAGTCAT-CAACCTAATATAGCAATTAATTATTCTTTTGCGTAACGGGTCA---ACTGATTCATTTCCCTGTTATTTAT
gi|6                          :          CCTTTACTACAAGTATAATAGGGAGCGCAATAGTTTAGGTAGCTCCCAGAACTTCCAA-TCCAGCGGTTAGTGTACAAACCCAAAGCGGGCGCATTATGTTCTTCGTGATTGTTATTTATGGTGGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGGTGGGAAATACTTT-CCAGTGCCATGACCGAAGATCAAAGCCGGGATCC-TGAAATAATAATCt
gi|7                          :                                                                                                       gTTACGTTCTTCGTGATAGTTATTAGTGGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN--ATGTGGGAAACACTTT-CCAGTGCCATG-CAAAGCATCAAACCCGGCTTCTGTGGAATGCTTATCAAACTACA-CAATCACTATACTTGGGCGCCAC----AATGAAA---ATAGAGGTGGAATTCAGAACAATAT
gi|8                          :                                                                                                                                                                                                                                                         ATGTGGGAAATACTTA-TCAATGCCATAACCGAGGATCAAACCCGGGACCC-TGGAATACTAATCCAATGACA-CGACCACTGGACTTGGGCGCCAC----AGTAACAACAATAGTCGTGCAATTTAAAACAATATATCGGCTAT-CACCCTAATATAGCAATTTATTACTATTTTGCTAAACAGGTCACTGACTGATTTATTTCAGTGTTACTTAT
gi|9                          :                                                                                                                                                                                                                                                         ATGTGAGAAATACTTA-CCAATGCCATTACCGAGGATCAAATCCGGGACCC-TGGAATACTTATCCAATGACA-CGACCACTGGACTTGGGCGCCAC----AATAACA---GTAGTCGTGCAGTTCAAAACAATATATCGGCTAT-CAACCTAATATAGCAATTTATTATTATTTTGCTAAACAGGCCACTGACTGATTTATTTCACTGTTATTTATt





Alignments
lowQualScore                  :                                                                                                                                                           99999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999                                                                                                 1111                                                                                                                    
lowQualScore                  :                                                                    7                                                          2      66             66    00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000               55                                  4                    4                        7777     1 777                                  4                                      1    3                           
lowQualScore                  :                                                                    .                                                          .      ..             ..    ..................................................................................................               ..                                  .                    .                        ....     . ...                                  .                                      .    .                           
lowQualScore                  :                                                                    3                                                          1      99             99    66666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666               00                                  0                    4                        0000     1 888                                  4                                      1    9                           
consensus                     :          CCTTAACTACAAGTATAATGGGGAGCGCAATAGTTTAGGTAGCTCCCAGAACTTCCAAATCCAGCGGTTAGTGTACAAACCCAAAGCGGGCGCATTATGTTCTTCGTGATTGTTATTTATGGTG--ACTGTTATTTTCA--TATANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTAAGCGAC--ATGTGGGAAATACTTN-CCAGTGCCATGACCGAGGATCAAACCCGGGACCC-TGGAATACTAATCCAATGAC-ACGACCACTGGACTTGGGCGCCAC----AATAACA---ATAGTCGTGCAATTCAAAACAATATATCGGTTAT-CAACCTAATATAGCAATTTATTACTATTTTGCTAAACAGGCCACTGACTGATTTATTTCACTGTTATTTAT
Reference ( family-1469 )     :          CCTTAACTACAAGTATAATGGGGAGCGCAATAGTTTAGGTAGCTCCCAGAACTTCCAAATCCAGCGGTTAGTGTACAAACCCAAAGCGGGCGCATTATGTTCTTCGTGATTGTTATTTATGGTG--ACTGTTATTTTCA--TATANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTAAGCGAC--ATGTGGGAAATACTTN-CCAGTGCCATGACCGAGGATCAAACCCGGGACCC-TGGAATACTAATCCAATGAC-ACGACCACTGGACTTGGGCGCCAC----AATAACA---ATAGTCGTGCAATTCAAAACAATATATCGGTTAT-CAACCTAATATAGCAATTTATTACTATTTTGCTAAACAGGCCACTGACTGATTTATTTCACTGTTATTTAT
gi|1                          :          CCTTATCTACAAGTATAATTGGGAGCGCAATAGTTTAGGTAGCTCCCAGTACTTCCAA-TCCAGCGGTTAGTGTACAAACCCAAAGCGTGCGCATTATGTTCTTCGTGATTGTTATTTATGGTG--ACTGTTATTTTCA--TATANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATGTGGGAAATACTTT-CCAGTGCCATGACCGAGGATCAAACTCGGGACCG-TGGAATACTAACCCAGTGAC-ACGACCACTTGACTTGGGCGCCACCGTGAATAAAA---ATAGTCGTGCAATTCAAAACAATATATCGGTTAT-CAACCTAATATAGCAATTTATTATCATTTTGCTAAACATGCGACTGATTGATTTGTTTCACTGTTATTTAT
gi|10                         :           CTTAACTACAAGTATAATGGGGAGCGCAATAGTTTAGGTAGCTCCCAGAACTTCCAAATCCAGCGGTTAGTGTACAAAACCAAAGAGGGCGCATTATATTTTTCGTAATTGTTATTTATGGTG--ACTGTTATTTTTA--TA
gi|11                         :                                                                                                                                                                                                                                                                                                                                                    TGGGCGCCAC----AATAACA---ATAGTCGTGTAATTCAAAACAATATATCGGTTAT-CAACCTAATATAGCAATTTATTACTATTTTGCTAAACAGGCCACTGACTGATTTATTTCCCTGTTA
gi|12                         :          CCTTAACTACAAGTATAATGGGGAGCGCAATAGTTTAGGTAGCTCCCAGTACTTCC-AATCCAGCGGTTAGTGTACAAACCCAAAGCGTGCGCATTATGTTCTTCGTGATT-TTATTGATGGTgtgat
gi|13                         :                                                                                                                                                                                                                                                     gGCGAC--ATGTGGCAAATACTTA-TCAATGCCATAACCGAGGATCAAACCCGGGACCC-TGAAATACTAATCCAATGAC-ACGACCACTGGACTTGGGCGCCAC----A
gi|14                         : caccgattgatTTAACTACAAGTATAATAGGGATCGCAGTAGTTTAGGTAGCTC
gi|15                         :            TTTACTACAAGTATAATGGGGAGCGCAATAGTTTAGGTAACTCCCAAAACTTCCAAATCCAGCTGTTAGTGTACAAACCCAAAGCGGGTGTAtataagcatccctggttcatttacttcacatgcgaggtgtacaacaccgattgatgcg
gi|16                         :                                                                                                                                                                                                                                                                                                                                                                                                AATATATACATTATACAGGGTAGTATAGCAATTTGTTATTATTTTGTAAAACATGCCA---ACTGATTTATTTCACTGACATTTATatg
gi|2                          :     atttaCCTTAACTACAAGTATAACGGGGAGCGCAATAGTTTAGGTAGTTCCCAGAACTTCCAA-TCCAGCGGTTAGTGTACAAACCCAAAGCGGGCGCATTATGTTCTTCGTGATTGTTATTTATGGTG--ACTGTTATTTTCA--TATANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATGTGGGAAATACTTT-CCAGTGCCATGACCAAGGATCAAACCCGGGACCC-TGGAATACTAATCCAATGACAACGACCACTTGACTAGGGCGCCACCGTGAATAAAA---ATAATCGTGCAGTTCAATACAATATATAGGCTAT-CAACCTAATATAGCAATTTATTATCATTTTGCTAAAAATGCC----ACTGATTTGTTTCACTGTTATTTATt
gi|3                          :            TTAACTATAAGCATAACTGGGAGCGCAGTAGTTTAGGAAGCTCCAAGATCTCCCAAATCCAGCGATTAGTGTACAAACCAAATGCGGGCGCATTATATTTTTCGTGATTGTTACTAATGGTG--ACTGTTATTTTTAAACANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN--ATGTGGGAAATACCTA-TCAATGCCATAACCGAGGATCAAACACGGGACCC-TGGAATACTAATCCAATGAC-ACGACCACAGGACTTGGGCGTCAC----AATAACA---ATAGTCGTGCAATTCAAAACAATATATCGGTTAT-CAACCTAATTTAGCAATTTATTACTATTTTGCTAAACACGCCACTGACTGATTTATTTCACTGTTATTTAT
gi|4                          :            TTAACTACAAGTATAATGGGGAGCGCAATAGTTTAGGTAACTCCCAGAACTTCCAAATTCAGCGGTTAGTGTACAAACCCAAAGCGGGCGCATTATATTCTTCTTGATTGTTATTTATTGTN--NNNNNNNNNNNNN--NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATGTGGGAAATACTTA-CCAATGCCATAACCGAGGATCAAACTCGGGACCG-TGGAATACTAATCCAGTGAC-ACGACCACTGGACTTGGGCGCCAC----AATAACA---ATAGTCATGCAATTCAAAACAATATATCGGTTAT-CAACCTAATATAGCAATTTATTACTATTTTGCTAAACAGGCCACTGACTGATTTATTTCACTGTTATCTATt
gi|5                          :          CCTGAACTATAAGTATAATGTGGAGTGCAATAGTATAGATAGCTCGTAGAAATTCCAAATCCAGCAGTTAGTGTACAAACCCAAAGCGGGCGCATTATGTTATTCGTGATTGTTAT--ATGGTG--ACTNNNNNNNNNN--NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTAAGCGAC--ATGTGGGAAATACTTTTCCTGTGCCATGACCGAAGATCAAACCCGGGACCC-TGGAATACTAATCCAATGAC-ACAACAACTGGACTTGTGCGCCAC----AGTAAAA---ATAGAGGAGCAATTCAAAACAATATATCAGTCAT-CAACCTAATATAGCAATTAATTATTCTTTTGCGTAACGGGTCA---ACTGATTCATTTCCCTGTTATTTAT
gi|6                          :          CCTTTACTACAAGTATAATAGGGAGCGCAATAGTTTAGGTAGCTCCCAGAACTTCCAA-TCCAGCGGTTAGTGTACAAACCCAAAGCGGGCGCATTATGTTCTTCGTGATTGTTATTTATGGTGGTNNNNNNNNNNNNN--NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN--AGGTGGGAAATACTTT-CCAGTGCCATGACCGAAGATCAAAGCCGGGATCC-TGAAATAATAATCt
gi|7                          :                                                                                                       gTTACGTTCTTCGTGATAGTTATTAGTGGTN--NNNNNNNNNNNNN--NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN--ATGTGGGAAACACTTT-CCAGTGCCATG-CAAAGCATCAAACCCGGCTTCTGTGGAATGCTTATCAAACTAC-ACAATCACTATACTTGGGCGCCAC----AATGAAA---ATAGAGGTGGAATTCAGAACAATAT
gi|8                          :                                                                                                                                                                                                                                                           --ATGTGGGAAATACTTA-TCAATGCCATAACCGAGGATCAAACCCGGGACCC-TGGAATACTAATCCAATGAC-ACGACCACTGGACTTGGGCGCCAC----AGTAACAACAATAGTCGTGCAATTTAAAACAATATATCGGCTAT-CACCCTAATATAGCAATTTATTACTATTTTGCTAAACAGGTCACTGACTGATTTATTTCAGTGTTACTTAT
gi|9                          :                                                                                                                                                                                                                                                        GAC--ATGTGAGAAATACTTA-CCAATGCCATTACCGAGGATCAAATCCGGGACCC-TGGAATACTTATCCAATGAC-ACGACCACTGGACTTGGGCGCCAC----AATAACA---GTAGTCGTGCAGTTCAAAACAATATATCGGCTAT-CAACCTAATATAGCAATTTATTATTATTTTGCTAAACAGGCCACTGACTGATTTATTTCACTGTTATTTATt





Alignments
lowQualScore                  :                                                                                                                                                           99999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999                                                                                                 1111                                                                                                                    
lowQualScore                  :                                                                    7                                                          2      66             66    00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000               55                                  4                    4                        7777     1 777                                  4                                      1    3                           
lowQualScore                  :                                                                    .                                                          .      ..             ..    ..................................................................................................               ..                                  .                    .                        ....     . ...                                  .                                      .    .                           
lowQualScore                  :                                                                    3                                                          1      99             99    66666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666               00                                  0                    4                        0000     1 888                                  4                                      1    9                           
consensus                     :          CCTTAACTACAAGTATAATGGGGAGCGCAATAGTTTAGGTAGCTCCCAGAACTTCCAAATCCAGCGGTTAGTGTACAAACCCAAAGCGGGCGCATTATGTTCTTCGTGATTGTTATTTATGGTG--ACTGTTATTTTCA--TATANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTAAGCGAC--ATGTGGGAAATACTTN-CCAGTGCCATGACCGAGGATCAAACCCGGGACCC-TGGAATACTAATCCAATGAC-ACGACCACTGGACTTGGGCGCCAC----AATAACA---ATAGTCGTGCAATTCAAAACAATATATCGGTTAT-CAACCTAATATAGCAATTTATTACTATTTTGCTAAACAGGCCACTGACTGATTTATTTCACTGTTATTTAT
Reference ( family-1469 )     :          CCTTAACTACAAGTATAATGGGGAGCGCAATAGTTTAGGTAGCTCCCAGAACTTCCAAATCCAGCGGTTAGTGTACAAACCCAAAGCGGGCGCATTATGTTCTTCGTGATTGTTATTTATGGTG--ACTGTTATTTTCA--TATANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTAAGCGAC--ATGTGGGAAATACTTN-CCAGTGCCATGACCGAGGATCAAACCCGGGACCC-TGGAATACTAATCCAATGAC-ACGACCACTGGACTTGGGCGCCAC----AATAACA---ATAGTCGTGCAATTCAAAACAATATATCGGTTAT-CAACCTAATATAGCAATTTATTACTATTTTGCTAAACAGGCCACTGACTGATTTATTTCACTGTTATTTAT
gi|1                          :          CCTTATCTACAAGTATAATTGGGAGCGCAATAGTTTAGGTAGCTCCCAGTACTTCCAA-TCCAGCGGTTAGTGTACAAACCCAAAGCGTGCGCATTATGTTCTTCGTGATTGTTATTTATGGTG--ACTGTTATTTTCA--TATANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATGTGGGAAATACTTT-CCAGTGCCATGACCGAGGATCAAACTCGGGACCG-TGGAATACTAACCCAGTGAC-ACGACCACTTGACTTGGGCGCCACCGTGAATAAAA---ATAGTCGTGCAATTCAAAACAATATATCGGTTAT-CAACCTAATATAGCAATTTATTATCATTTTGCTAAACATGCGACTGATTGATTTGTTTCACTGTTATTTAT
gi|10                         :           CTTAACTACAAGTATAATGGGGAGCGCAATAGTTTAGGTAGCTCCCAGAACTTCCAAATCCAGCGGTTAGTGTACAAAACCAAAGAGGGCGCATTATATTTTTCGTAATTGTTATTTATGGTG--ACTGTTATTTTTA--TA
gi|11                         :                                                                                                                                                                                                                                                                                                                                                    TGGGCGCCAC----AATAACA---ATAGTCGTGTAATTCAAAACAATATATCGGTTAT-CAACCTAATATAGCAATTTATTACTATTTTGCTAAACAGGCCACTGACTGATTTATTTCCCTGTTA
gi|12                         :          CCTTAACTACAAGTATAATGGGGAGCGCAATAGTTTAGGTAGCTCCCAGTACTTCC-AATCCAGCGGTTAGTGTACAAACCCAAAGCGTGCGCATTATGTTCTTCGTGATT-TTATTGATGGTgtgat
gi|13                         :                                                                                                                                                                                                                                                     gGCGAC--ATGTGGCAAATACTTA-TCAATGCCATAACCGAGGATCAAACCCGGGACCC-TGAAATACTAATCCAATGAC-ACGACCACTGGACTTGGGCGCCAC----A
gi|14                         : caccgattgatTTAACTACAAGTATAATAGGGATCGCAGTAGTTTAGGTAGCTC
gi|15                         :            TTTACTACAAGTATAATGGGGAGCGCAATAGTTTAGGTAACTCCCAAAACTTCCAAATCCAGCTGTTAGTGTACAAACCCAAAGCGGGTGTAtataagcatccctggttcatttacttcacatgcgaggtgtacaacaccgattgatgcg
gi|16                         :                                                                                                                                                                                                                                                                                                                                                                                                AATATATACATTATACAGGGTAGTATAGCAATTTGTTATTATTTTGTAAAACATGCCA---ACTGATTTATTTCACTGACATTTATatg
gi|2                          :     atttaCCTTAACTACAAGTATAACGGGGAGCGCAATAGTTTAGGTAGTTCCCAGAACTTCCAA-TCCAGCGGTTAGTGTACAAACCCAAAGCGGGCGCATTATGTTCTTCGTGATTGTTATTTATGGTG--ACTGTTATTTTCA--TATANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATGTGGGAAATACTTT-CCAGTGCCATGACCAAGGATCAAACCCGGGACCC-TGGAATACTAATCCAATGACAACGACCACTTGACTAGGGCGCCACCGTGAATAAAA---ATAATCGTGCAGTTCAATACAATATATAGGCTAT-CAACCTAATATAGCAATTTATTATCATTTTGCTAAAAATGCC----ACTGATTTGTTTCACTGTTATTTATt
gi|3                          :            TTAACTATAAGCATAACTGGGAGCGCAGTAGTTTAGGAAGCTCCAAGATCTCCCAAATCCAGCGATTAGTGTACAAACCAAATGCGGGCGCATTATATTTTTCGTGATTGTTACTAATGGTG--ACTGTTATTTTTAAACANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN--ATGTGGGAAATACCTA-TCAATGCCATAACCGAGGATCAAACACGGGACCC-TGGAATACTAATCCAATGAC-ACGACCACAGGACTTGGGCGTCAC----AATAACA---ATAGTCGTGCAATTCAAAACAATATATCGGTTAT-CAACCTAATTTAGCAATTTATTACTATTTTGCTAAACACGCCACTGACTGATTTATTTCACTGTTATTTAT
gi|4                          :            TTAACTACAAGTATAATGGGGAGCGCAATAGTTTAGGTAACTCCCAGAACTTCCAAATTCAGCGGTTAGTGTACAAACCCAAAGCGGGCGCATTATATTCTTCTTGATTGTTATTTATTGTN--NNNNNNNNNNNNN--NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATGTGGGAAATACTTA-CCAATGCCATAACCGAGGATCAAACTCGGGACCG-TGGAATACTAATCCAGTGAC-ACGACCACTGGACTTGGGCGCCAC----AATAACA---ATAGTCATGCAATTCAAAACAATATATCGGTTAT-CAACCTAATATAGCAATTTATTACTATTTTGCTAAACAGGCCACTGACTGATTTATTTCACTGTTATCTATt
gi|5                          :          CCTGAACTATAAGTATAATGTGGAGTGCAATAGTATAGATAGCTCGTAGAAATTCCAAATCCAGCAGTTAGTGTACAAACCCAAAGCGGGCGCATTATGTTATTCGTGATTGTTAT--ATGGTG--ACTNNNNNNNNNN--NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTAAGCGAC--ATGTGGGAAATACTTTTCCTGTGCCATGACCGAAGATCAAACCCGGGACCC-TGGAATACTAATCCAATGAC-ACAACAACTGGACTTGTGCGCCAC----AGTAAAA---ATAGAGGAGCAATTCAAAACAATATATCAGTCAT-CAACCTAATATAGCAATTAATTATTCTTTTGCGTAACGGGTCA---ACTGATTCATTTCCCTGTTATTTAT
gi|6                          :          CCTTTACTACAAGTATAATAGGGAGCGCAATAGTTTAGGTAGCTCCCAGAACTTCCAA-TCCAGCGGTTAGTGTACAAACCCAAAGCGGGCGCATTATGTTCTTCGTGATTGTTATTTATGGTGGTNNNNNNNNNNNNN--NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN--AGGTGGGAAATACTTT-CCAGTGCCATGACCGAAGATCAAAGCCGGGATCC-TGAAATAATAATCt
gi|7                          :                                                                                                       gTTACGTTCTTCGTGATAGTTATTAGTGGTN--NNNNNNNNNNNNN--NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN--ATGTGGGAAACACTTT-CCAGTGCCATG-CAAAGCATCAAACCCGGCTTCTGTGGAATGCTTATCAAACTAC-ACAATCACTATACTTGGGCGCCAC----AATGAAA---ATAGAGGTGGAATTCAGAACAATAT
gi|8                          :                                                                                                                                                                                                                                                           --ATGTGGGAAATACTTA-TCAATGCCATAACCGAGGATCAAACCCGGGACCC-TGGAATACTAATCCAATGAC-ACGACCACTGGACTTGGGCGCCAC----AGTAACAACAATAGTCGTGCAATTTAAAACAATATATCGGCTAT-CACCCTAATATAGCAATTTATTACTATTTTGCTAAACAGGTCACTGACTGATTTATTTCAGTGTTACTTAT
gi|9                          :                                                                                                                                                                                                                                                        GAC--ATGTGAGAAATACTTA-CCAATGCCATTACCGAGGATCAAATCCGGGACCC-TGGAATACTTATCCAATGAC-ACGACCACTGGACTTGGGCGCCAC----AATAACA---GTAGTCGTGCAGTTCAAAACAATATATCGGCTAT-CAACCTAATATAGCAATTTATTATTATTTTGCTAAACAGGCCACTGACTGATTTATTTCACTGTTATTTATt


blockSeqs                     :                                                                    A                                                          T      GT             AA    NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN               TT                                  G                    A                        CGTG     C ACA                                  A                                      G    C
blockSeqs                     :                                                                    A                                                          G      .              .     NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN               A                                   .                    .                        .        A .                                    .                                      T    C
blockSeqs                     :                                                                    A                                                          T      .              .     NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN                 T                                   .                    .                        .        C .                                    .                                      T    C
blockSeqs                     :                                                                    A                                                          A      .              .     NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTAAGCGAC                 A                                   .                    .                        .        C .                                    .                                      C    C
blockSeqs                     :                                                                    A                                                          T      .              .     NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN                 A                                   .                    .                        .        A .                                    .                                      G    C
blockSeqs                     :                                                                    A                                                          T      .              .     NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN                 T                                   .                    .                        .        A .                                    .                                      G    .
blockSeqs                     :                                                                    .                                                          A      .              .                                                                                                                      T                                   .                    .                        .        C .                                    .                                      G    .
blockSeqs                     :                                                                    .                                                          .                                                                                                                                            A                                   .                    .                        .        C .                                    .                                      G    .
blockSeqs                     :                                                                                                                                                                                                                                                                            A                                   .                                             .                                                                                            


blockSeqCons                  :                                                                                                                                                                                                                                                                                                                                                              ****
originalCons                  :          CCTTAACTACAAGTATAATGGGGAGCGCAATAGTTTAGGTAGCTCCCAGAACTTCCAAATCCAGCGGTTAGTGTACAAACCCAAAGCGGGCGCATTATGTTCTTCGTGATTGTTATTTATGGTG--ACTGTTATTTTCA--TATANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTAAGCGAC--ATGTGGGAAATACTTN-CCAGTGCCATGACCGAGGATCAAACCCGGGACCC-TGGAATACTAATCCAATGAC-ACGACCACTGGACTTGGGCGCCAC----AATAACA---ATAGTCGTGCAATTCAAAACAATATATCGGTTAT-CAACCTAATATAGCAATTTATTACTATTTTGCTAAACAGGCCACTGACTGATTTATTTCACTGTTATTTAT
finalCons                     :          CCTTAACTACAAGTATAATGGGGAGCGCAATAGTTTAGGTAGCTCCCAGAACTTCCAAATCCAGCGGTTAGTGTACAAACCCAAAGCGGGCGCATTATGTTCTTCGTGATTGTTATTTATGGTG--ACTGTTATTTTCA--TATANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTAAGCGAC--ATGTGGGAAATACTTN-CCAGTGCCATGACCGAGGATCAAACCCGGGACCC-TGGAATACTAATCCAATGAC-ACGACCACTGGACTTGGGCGCCAC----AATAACA---ATAGTCGTGCAATTCAAAACAATATATCGGTTAT-CAACCTAATATAGCAATTTATTACTATTTTGCTAAACAGGCCACTGACTGATTTATTTCACTGTTATTTAT





Alignments
lowQualScore                  :                                                                                                                                                           99999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999                                                                                                 1111                                                                                                                    
lowQualScore                  :                                                                    7                                                          2      66             66    00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000               55                                  4                    4                        7777     1 777                                  4                                      1    3                           
lowQualScore                  :                                                                    .                                                          .      ..             ..    ..................................................................................................               ..                                  .                    .                        ....     . ...                                  .                                      .    .                           
lowQualScore                  :                                                                    3                                                          1      99             99    66666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666               00                                  0                    4                        0000     1 888                                  4                                      1    9                           
consensus                     :          CCTTAACTACAAGTATAATGGGGAGCGCAATAGTTTAGGTAGCTCCCAGAACTTCCAAATCCAGCGGTTAGTGTACAAACCCAAAGCGGGCGCATTATGTTCTTCGTGATTGTTATTTATGGTG--ACTGTTATTTTCA--TATANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTAAGCGAC--ATGTGGGAAATACTTN-CCAGTGCCATGACCGAGGATCAAACCCGGGACCC-TGGAATACTAATCCAATGAC-ACGACCACTGGACTTGGGCGCCAC----AATAACA---ATAGTCGTGCAATTCAAAACAATATATCGGTTAT-CAACCTAATATAGCAATTTATTACTATTTTGCTAAACAGGCCACTGACTGATTTATTTCACTGTTATTTAT
Reference ( family-1469 )     :          CCTTAACTACAAGTATAATGGGGAGCGCAATAGTTTAGGTAGCTCCCAGAACTTCCAAATCCAGCGGTTAGTGTACAAACCCAAAGCGGGCGCATTATGTTCTTCGTGATTGTTATTTATGGTG--ACTGTTATTTTCA--TATANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTAAGCGAC--ATGTGGGAAATACTTN-CCAGTGCCATGACCGAGGATCAAACCCGGGACCC-TGGAATACTAATCCAATGAC-ACGACCACTGGACTTGGGCGCCAC----AATAACA---ATAGTCGTGCAATTCAAAACAATATATCGGTTAT-CAACCTAATATAGCAATTTATTACTATTTTGCTAAACAGGCCACTGACTGATTTATTTCACTGTTATTTAT
gi|1                          :          CCTTATCTACAAGTATAATTGGGAGCGCAATAGTTTAGGTAGCTCCCAGTACTTCCAA-TCCAGCGGTTAGTGTACAAACCCAAAGCGTGCGCATTATGTTCTTCGTGATTGTTATTTATGGTG--ACTGTTATTTTCA--TATANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATGTGGGAAATACTTT-CCAGTGCCATGACCGAGGATCAAACTCGGGACCG-TGGAATACTAACCCAGTGAC-ACGACCACTTGACTTGGGCGCCACCGTGAATAAAA---ATAGTCGTGCAATTCAAAACAATATATCGGTTAT-CAACCTAATATAGCAATTTATTATCATTTTGCTAAACATGCGACTGATTGATTTGTTTCACTGTTATTTAT
gi|10                         :           CTTAACTACAAGTATAATGGGGAGCGCAATAGTTTAGGTAGCTCCCAGAACTTCCAAATCCAGCGGTTAGTGTACAAAACCAAAGAGGGCGCATTATATTTTTCGTAATTGTTATTTATGGTG--ACTGTTATTTTTA--TA
gi|11                         :                                                                                                                                                                                                                                                                                                                                                    TGGGCGCCAC----AATAACA---ATAGTCGTGTAATTCAAAACAATATATCGGTTAT-CAACCTAATATAGCAATTTATTACTATTTTGCTAAACAGGCCACTGACTGATTTATTTCCCTGTTA
gi|12                         :          CCTTAACTACAAGTATAATGGGGAGCGCAATAGTTTAGGTAGCTCCCAGTACTTCC-AATCCAGCGGTTAGTGTACAAACCCAAAGCGTGCGCATTATGTTCTTCGTGATT-TTATTGATGGTgtgat
gi|13                         :                                                                                                                                                                                                                                                     gGCGAC--ATGTGGCAAATACTTA-TCAATGCCATAACCGAGGATCAAACCCGGGACCC-TGAAATACTAATCCAATGAC-ACGACCACTGGACTTGGGCGCCAC----A
gi|14                         : caccgattgatTTAACTACAAGTATAATAGGGATCGCAGTAGTTTAGGTAGCTC
gi|15                         :            TTTACTACAAGTATAATGGGGAGCGCAATAGTTTAGGTAACTCCCAAAACTTCCAAATCCAGCTGTTAGTGTACAAACCCAAAGCGGGTGTAtataagcatccctggttcatttacttcacatgcgaggtgtacaacaccgattgatgcg
gi|16                         :                                                                                                                                                                                                                                                                                                                                                                                                AATATATACATTATACAGGGTAGTATAGCAATTTGTTATTATTTTGTAAAACATGCCA---ACTGATTTATTTCACTGACATTTATatg
gi|2                          :     atttaCCTTAACTACAAGTATAACGGGGAGCGCAATAGTTTAGGTAGTTCCCAGAACTTCCAA-TCCAGCGGTTAGTGTACAAACCCAAAGCGGGCGCATTATGTTCTTCGTGATTGTTATTTATGGTG--ACTGTTATTTTCA--TATANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATGTGGGAAATACTTT-CCAGTGCCATGACCAAGGATCAAACCCGGGACCC-TGGAATACTAATCCAATGACAACGACCACTTGACTAGGGCGCCACCGTGAATAAAA---ATAATCGTGCAGTTCAATACAATATATAGGCTAT-CAACCTAATATAGCAATTTATTATCATTTTGCTAAAAATGCC----ACTGATTTGTTTCACTGTTATTTATt
gi|3                          :            TTAACTATAAGCATAACTGGGAGCGCAGTAGTTTAGGAAGCTCCAAGATCTCCCAAATCCAGCGATTAGTGTACAAACCAAATGCGGGCGCATTATATTTTTCGTGATTGTTACTAATGGTG--ACTGTTATTTTTAAACANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN--ATGTGGGAAATACCTA-TCAATGCCATAACCGAGGATCAAACACGGGACCC-TGGAATACTAATCCAATGAC-ACGACCACAGGACTTGGGCGTCAC----AATAACA---ATAGTCGTGCAATTCAAAACAATATATCGGTTAT-CAACCTAATTTAGCAATTTATTACTATTTTGCTAAACACGCCACTGACTGATTTATTTCACTGTTATTTAT
gi|4                          :            TTAACTACAAGTATAATGGGGAGCGCAATAGTTTAGGTAACTCCCAGAACTTCCAAATTCAGCGGTTAGTGTACAAACCCAAAGCGGGCGCATTATATTCTTCTTGATTGTTATTTATTGTN--NNNNNNNNNNNNN--NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATGTGGGAAATACTTA-CCAATGCCATAACCGAGGATCAAACTCGGGACCG-TGGAATACTAATCCAGTGAC-ACGACCACTGGACTTGGGCGCCAC----AATAACA---ATAGTCATGCAATTCAAAACAATATATCGGTTAT-CAACCTAATATAGCAATTTATTACTATTTTGCTAAACAGGCCACTGACTGATTTATTTCACTGTTATCTATt
gi|5                          :          CCTGAACTATAAGTATAATGTGGAGTGCAATAGTATAGATAGCTCGTAGAAATTCCAAATCCAGCAGTTAGTGTACAAACCCAAAGCGGGCGCATTATGTTATTCGTGATTGTTAT--ATGGTG--ACTNNNNNNNNNN--NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTAAGCGAC--ATGTGGGAAATACTTTTCCTGTGCCATGACCGAAGATCAAACCCGGGACCC-TGGAATACTAATCCAATGAC-ACAACAACTGGACTTGTGCGCCAC----AGTAAAA---ATAGAGGAGCAATTCAAAACAATATATCAGTCAT-CAACCTAATATAGCAATTAATTATTCTTTTGCGTAACGGGTCA---ACTGATTCATTTCCCTGTTATTTAT
gi|6                          :          CCTTTACTACAAGTATAATAGGGAGCGCAATAGTTTAGGTAGCTCCCAGAACTTCCAA-TCCAGCGGTTAGTGTACAAACCCAAAGCGGGCGCATTATGTTCTTCGTGATTGTTATTTATGGTGGTNNNNNNNNNNNNN--NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN--AGGTGGGAAATACTTT-CCAGTGCCATGACCGAAGATCAAAGCCGGGATCC-TGAAATAATAATCt
gi|7                          :                                                                                                       gTTACGTTCTTCGTGATAGTTATTAGTGGTN--NNNNNNNNNNNNN--NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN--ATGTGGGAAACACTTT-CCAGTGCCATG-CAAAGCATCAAACCCGGCTTCTGTGGAATGCTTATCAAACTAC-ACAATCACTATACTTGGGCGCCAC----AATGAAA---ATAGAGGTGGAATTCAGAACAATAT
gi|8                          :                                                                                                                                                                                                                                                           --ATGTGGGAAATACTTA-TCAATGCCATAACCGAGGATCAAACCCGGGACCC-TGGAATACTAATCCAATGAC-ACGACCACTGGACTTGGGCGCCAC----AGTAACAACAATAGTCGTGCAATTTAAAACAATATATCGGCTAT-CACCCTAATATAGCAATTTATTACTATTTTGCTAAACAGGTCACTGACTGATTTATTTCAGTGTTACTTAT
gi|9                          :                                                                                                                                                                                                                                                        GAC--ATGTGAGAAATACTTA-CCAATGCCATTACCGAGGATCAAATCCGGGACCC-TGGAATACTTATCCAATGAC-ACGACCACTGGACTTGGGCGCCAC----AATAACA---GTAGTCGTGCAGTTCAAAACAATATATCGGCTAT-CAACCTAATATAGCAATTTATTATTATTTTGCTAAACAGGCCACTGACTGATTTATTTCACTGTTATTTATt