lowQualScore : 1111111111111111111111111111111111111111111111111111111111111111111111111111 111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 1 111 111 333333333 11 5555555 2 1 11 1111 1111 1111 22222222 1 2222 111 5555555555555555555555555555555555555555555555555555555555555555555555555555 11 111 1 1 222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222 22222 22 4444444444 11 3333333333333333333 1 111 7777777777777777777777777777 11 5555555555555555555 11 111 22222222 11 111 11111 1 11
lowQualScore : 5 2 777 2 7 444 999999999 6 3 33 5555555 0 5 2 2 3 88 99 0000 0000 888 2 0000 77 0 99999999 333 4 3 2 4 2 1 3 4444 222 1111111111111111111111111111111111111111111111111111111111111111111111111111 00 2 4 6 444 4 0 5 2 8 4 5 3 55 5 3 3 5 7 6 999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999 8 77777 1 33 7 4 5 9999 66 1111111111 22 3333333333333333333 4 2 2 555 1 888 7777777777777777777777777777 5 4 77 3333333333333333333 0 22 2 1 222 3 0 55 66666666 6 1 6 55 111 99 66666 6 3 6 5 2 0 99 6 0
lowQualScore : . . ... . . ... ......... . . .. ....... . . . . . .. .. .... .... ... . .... .. . ........ ... . . . . . . . .... ... ............................................................................ .. . . . ... . . . . . . . . .. . . . . . . ................................................................................................................................. . ..... . .. . . . .... .. .......... .. ................... . . . ... . ... ............................ . . .. ................... . .. . . ... . . .. ........ . . . .. ... .. ..... . . . . . . .. . .
lowQualScore : 5 2 555 0 2 000 888888888 0 2 44 6666666 0 0 5 2 5 00 22 6666 1111 888 2 6666 99 9 55555555 000 1 6 3 4 3 4 0 0000 111 8888888888888888888888888888888888888888888888888888888888888888888888888888 00 0 5 9 000 4 5 0 5 9 4 4 9 44 0 9 9 1 0 0 000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 0 00000 0 88 3 8 7 4444 11 6666666666 22 2222222222222222222 8 8 4 666 5 888 0000000000000000000000000000 0 0 55 5555555555555555555 1 66 9 0 666 0 2 77 00000000 7 3 7 22 777 22 00000 3 5 2 7 5 6 88 0 7
consensus : AACATAATTTCAAAATTGTTA---TAAAAANATTTAAAAA-GCC----TTATTTTGGTT-CAAAAAT---TTTCAAAGAAAANATCTATTTTAATATTGAAGAATGTTT--TAATTGTGCT----AAC---A---ATCTATT----ATCA--TAATTATGCT--TTTT--CAGTTTCAGATTATATTCATTTAGTTATTGAAA-GAACCTTTGTAATCCACCCTGTACAACCGGTAATGAGAGACAATCGATGTGGTACCAC----CATGTACAATCATTC--ATG---TGAG--ATA--TAT-------------G--------------GA--------------ACT-----------CGA--CATCTGATTCATGGATTTCTGAT---GATGCGACTCATGGTGAGGAATATTCTNTATTGCTTGTAAAAGTTTTGACTGTAAGACATCAGATAGAAGCAGCAGCTATGTCATATGCAACAG-A-TNACTAANNAA-TTCTGTTTTGGGTGGGATCCTCCATGACCGATTGATCCTAAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACTT-GGGCACCTGTTTGATTATATGATGGAGAGTTGATAA-TA----A--A-AC-------AAAT--GTCACTA-----------G-------TAAGTGATAAATGCCCCGGAAGCAGTC--TGTGAA---TGAA--AATAC--------AT-T----A-A--T-TGTGACTAT-TTTTAGG-G----T-N----------AATAAAANAACTTGACCTTGA-CNTATGAGCTACAGA------TCTTG-GTGCAACATGT-CATGATGTGATG---ATTATTTGTG--TAGTTATTTCGAAACCCCGCAATGAATNAAAA-CATTAAACAGGATACGAATAACACTTTCTTTATATACATGTATATAT
Reference ( gi|1 ) : AACATAATTTCAAAATTATTA---TGAAAATATTTAAAAC-GCA----TTATCTTGGTT-AAAAAAA---T--CAAATAACAGATCTGTTTTAATATTAAAATATGTTT--TAGTTGTGCT----AAC---A---ATCTATT----ATCA--TAATTATACTA-TTTT--CAGTTTCAGATTATATTCATTAAGTTATTGAAA-GAACCTTTGTAATCCACCCTGTACAACCGGTAACGAGAGACAATCAATGTGGCACCAC----CATGTACAATCATTC--TTG---T-----ATA--TAT-------------G--------------GA--------------ACT-----------CGA--CATCTGATTCGTGGACTTCTGAT---GGTGCGACTCATGGTGATGAATATTCTGTATTGCTTGTAAAAGTTTTGACTGTAAGACATCAGATAGAAGCAGCAGCTATGTCATATGCAATAG-A-TAACTAAACAA-TTCTGTTTTGGGTGGGATCTTCTATGACTGATTGAACCTGAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGACTT-GGGCACCTCGTTCATTATATAATGGAGAGTTGATGA-TA----A--A-A--------AAAT--GTCACTA-----------A-------TAAGTGATAAATACCCAAGGAGCAGTG--TGTAAA---TGAA--TAGAC--------AT--------A--T-TGCGACTAT-CTTTAGA-G----T-A----------AATAAAACAACTTGACCTTGA-CGTATGAGCTACAGG------TCTTG-GTGCAACATGT-CATGAAGTGATG---ATTATTTGTG--TGGTTATTTCAAATCCCCACACTGAATTAAAA-CATTAAACAGGATACAAATAACATTTTCTTTATATTCATGTGTGTAT
gi|2 : AACATAATTTCAAAATTATTA---TGAAAAGATTTAAAAC-GCC----TTATTTTGATTTAAAGAAA---TT-CAAAGAAAAGATCTGTTATAATATTAAAGAATGTTT--TAATTGTGCT----AAC---A---ATCTATT----ATCA--TAATTATACT------------TTCAGATTATATTCATTTAGTTATTGAAA-GAACCTTTGTAATCCACCCTGTACATCCGTTAACGAGAGACAATCAATGTGGCACCAC----CATGTACAATCATTC--TAG---TGAG--ATA--TAT-------------G--------------GA--------------ACT-----------CGA--CATCTGATTCGTGGCTTTCTGAT---GGTGCGACTCATGGTGAGGAATATTCTGTATTGCTTTTAAA-GTTTTGATTGTAAGACATCAGATAAAAGCAGCAGCTATGTCATATGCAATAT-A-TAACTAAACAA-TTCTGTTTTGGGTGGGATCTTCCATGACCGACTGATCCTAAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTT-GGGCACCTAGTTAATTTTATAATGGAGAGTTGATGA-TAAAACA--A-A--------AAAT--GTCACTT-----------A-------TAATTGTTAAATACCTAAGAAGCAGTG--TGTAAA---TGAA--AATAC--------AT--------A--T-TGCGACTAT--TTTAGA-G----T-T----------AATAAAACACCTTGACATTGA-CGTATGAGTTACAGA------TCTTG-GTGAAACATGT-CATGAAGTGATG---ATTATTTGTG--TGGTTATTTCAAATCTCCACACCGAATTAAAA-CATTAAACAGGATACAAATAACATGTTCTTTAT
gi|11 : AACATAATTTCAAAACTGTTGCTCTAAATCTATTTAACAA-GCC----TTATTTTG-TT-AAAAAAGAATT--CAAAGAAAATATCTATTTTAATATTGAAGAATGTTT--
gi|9 : ttacacttcagtgtattgttgttgtttttaagattttgctttaagatcatgttttattttatcaactttccgcatcttcaaattcctttattaaggaaaatcatgtgaccttgcttgacttttatatggtatgctcattgctgctattttcaaaACATAATT-CAAAATTGTTA---AAAAAAAAACAAAAAAAGCT----TTATTTTGGTT-CAGAAAT---TTTCAAAGAAAATATGTACTTTAATATTGAAGAATGTTT--CAGTTGTGCT----AAC---A---ATCTACT----AGAAATTAATT-TAAAA-T------AG----AGATAATACTTATTTAGTTATTGAAA-GAACCTTTGTAATCCACCCTGTACAACTGGTAATGAGAAACAATTGATGTGGTACCAC----CATCTGCAATCATTC--ATG---TGAG--ATA--TGTAGACTATACTAAGG--------------GA--------------ACT-----------CAA--TATGTGATTCAAGGAacg
gi|14 : ttacacttcagtgtattgttggtttttagatcatgttttattttatcaaattgttgcatctttaagaaaatcatgtgaccttgcttgACATAATT-CAAAATTGTTA---TAAAAACA---AAAAA-AAAAGTTTTATTTTGGTT-CAGAAAT---TTTCAAAGAGAATATCTTCTTTAACATTGAAAAATGTTT--CAGTTGTGCT----AAC---A---ATCTACT----At
gi|3 : ttacactttagtgtattgttgtttttaagatcatgttttattttatcgaattgttgcatctttaggaaaatcatgtgacctttcttgTTGGTT-CAAAACT---TTTCAAA-AAAAGATCTGTTTAAATATTGAAAAATGTTT--TAATTGTAC-----AACTAGA---ATTTTTTTTTTATCA--TAATTATACT--TTTC--CAGTTTTAGGTTATATTCATTTAGTTACTGAAA-GAACCTTTATTATCCACCCTGTACAACCGGTTATGAGAGACAATCAATGTGGTACCAC----CATGTACAATCATTC--ATG---TGAA--ATA--TAT-------------G--------------GACTATAGTAAGGGA-ACT-----------CGA--CATCTAATTCATGGATTTCTGAT---GATGCGACTCATGGTGAGAAATATTCTTTATTGCTTGTAAAAGTTTTGAATGTAAAGCATCAGATAGAAGCAGCAGCTATGTCATATGCAATAG-A-TTACTAATAAA-TTTTGTTTTGGGTGGGATCCTCCATGACTGATTGATTCTAAGgaaattaaaaactatataattatgtt
gi|21 : tAGATCTATTTTAATATTGAAGAAAGTTTAATAATC-TACTAGAAAAT---AATTATTTGTT----ATCA--TAATTATGATATTTTT--CAGTTGCAGGTTATATTTATTAAGTTATTAAAA-TAACCTTTGTAGTCCACCCTattacttgtgtctcaccactgaggcctggtnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnagagtatcagaatttactgatgatatgtagagttgatagtgaaacagaaagtgttgctaataggtgataaatgccccagaagcagtctgtgaatgaaaatacatgtatgtatattctgactgttttcagggttaataaataaacttgactttgacctatgaacagatctttgtgtaacaggtcatgtttgatgattatttatatggttatctaggaatcttgcaatgaatgaaaacattaaacaggatatgaataacacttcctgcatatacatgtatatatgta
gi|6 : aCT----AAA---A---ATGTATT----ATCA--TAATTATGCT--TTTC--CA-TTTCGGATTATATTTAGTTAGTTATTGAAA-GAACCTTTGTAATCCACCCTATACAACAAGTAATGAGAGACAATCAATGTGTCACCAC----CATGTACAATCATTCATTTGAGAT-----ATA--TAT-------------GTACTTATTGTAAGGGA--------------ACT-----------AGA--CATGTGATTCATAGATTTCTTAT---GATGTGACTCGTGGTAAGGAATATTCTTTATTGCTTGTAAAAGTTTTGACTGTAAGATATCAGATAGAAGCAGCAGCTATGTCATATACAACAG-ATTAGC--AATAAGTTGTATTTTGTGTGGAATTCTCTATGACGAACTGATCTTAAG
gi|4 : actagaaT----AAA---A---ATGTATT----ATCG--TAATTATGCT---TTT--C-----CAGATTATTTTTAGTTAGTTGTTGAAA-GAACTTTTGTAATCCACCCTGTACAACCAGTAATGAGAGACAATCAGTGTGTCACCAC----CATGTACAATCATTC--ATG---TGAGATATA--CAT-------------G--------------GACTTATTCAAAGGGAACT-----------AGA--CATGTGATTCATAGATTTGTTAC---GATGCAACTCATGGTAAGAAATATTCTTTATTGCTTGTAAAAGTTTTGACTGTAAGACATCAGATAGAAGCAGCAGCTATGTCATATGCAACAG-A-TTACTAATAAA-GTCTATTTTCTGTGGAATTCTCCATGACCAATTGATCTTAAGatcacttaggtnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnagtaccccactctgaatttacaagggcacctgtttgattatatgaagagttgataattaaacaaaatgggtcactcgtaagtggt
gi|10 : ctaacagtctactagaaatT----AAA---A---AATTATT----AGCA--TAATTATCCTT-TTTTTTCAGTTTCAGATTGTATTCATTTAGTTATCAAAA-GAACCTTTGTAATCCACCCTGTACAACTGGCAATGAGAGACAATCTATGTGGTACCAC----CATGTACAATCAGTC--ATG---TGAG--ATA--TAT-------------GGACTATTCTAAGT-GA--------------ACT-----------TGA--CATCTTATTCATGGATTTCTGAC---GATGCAACTCATGGTGAGGAATATTCTGTATTGCTTGTTAAAGTTTTGACTGTAGCACATCATATAGAAGCAGCAGTTATATCATATGCAATatcagatgtctctaaccacttaggtnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntgaattacttgggcacctgtttgatcatatggagagttgataataaaacaaaataggtcactcgtaagtgataaataccctggaagctgtctgtagatgaaaatatgtattttgtaaattgttactattattaaaaacacatgaccttgagctacagacctggatcttggtgcaacacgttgtgatgtgatgattatttgtgtagttatatcaaaaccccttaatgaataaaaacattagacatgttatgaataccactttc
gi|7 : aat-TTTT--CAGTATCAGATTATATTCATTTAGTTATTGAAAAGAACCTTTGTAATCCACCCTGTACAACTGGTAATGAGAGACAATCAATGTGGTACCAT----CGTGTACAATCATTC--ATG---TGAG--ATA--TAG-------------G--------------GACTTTACTAAGATA-ACT-----------CAA--CACCTGGTTCATGGAATTCTGAT---GATGCGACTCATGGTGAGGAAAATTCTTTATTGCTTGTAAAAGTTTTGACTGTAAGACATCAGATAGAAGCAGCAGGTATGTCATATGCAATAG-A-TTACTAAACAA-ATCTGTTTTGGGTGGGATCCTCCATGATCGATT
gi|5 : ttacgcttagtttattgttgttgtttttaggagtttgcttaaaggtgaagttttattttatcaaattcctgcagttttaaattattttaaagaaaataatgtgaccttgcttgacttttatatgatttgcgcattgttgcaatttacaaaaacataatttcaaaattgttgttataaaatttttttattttGTTTCAGATTATACTTATTTAGTTATTGAAA-GAAACTTTGTAATCAACCCTGTACAACCGGTAATGAGAAACAGTTGATGTGGTACCACATC-TGTCTGCAATCATTC--ATG---TGAG--ATA--TGTAGACTATACTAAGG--------------GA--------------ACT-----------CAA--TATGTGATTCACGGATTTCTGAT---GATGTGACTAATGGTTAGGAATATTCTGTATTGTTTGTAAAAGTTTTGACTGTTACACATCAGATAGAAGCAGCAGCTATGCCATATGCAACAG-A-TTACCAATAAA-TTCTATTTTGGGAGGGATTCTCCATGTCCGATCAATCCT
gi|13 : AAA-GAACCTTTGTAATCCACCCTGTACAACATGTAATAGGAGACA--CCATGT---ACAATTGTTCATGCA-AACTATT---TTGAC-T-----ATACTTAG-------------G--------------GA--------------ACTGTGCCACATTTTGATTCATTTGATTCATAGATTGCTGATTAAAATACATCACATGGTAAGGAATATTGTGTTCTGTTTGTAAAAGTTTTGACTGCAGGACATCAGATAGAAGCAGCAGTCATGTCATACGCAACCGAA-TAACAATACAtcaaatttcttgtctctcaccgctgaggttgggtnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnttacttcgggcatctgtttgatgaatgttgattataaaacaaactaaaaatgtcaccaaaatgtcacttataagtgataaatgcctcataagcagtctgtgaatgaaaatacatatatgtaactatatttcgactaattttgggttaataaaaaaacttgacctttacctttgagttacagatcttagtgcaacatatcatgatgtgatgattatttgtgtagttatttcgcaatgaatcaaaacataaaattgaatacctata
gi|12 : AAA-AAACCTTTGTAATCCACCCTGTACAACATGTAATAGGAGACA--CCATGT---ACAATTGTTCATGCA-AACTATT---TTGAC-T-----ATACTTGG-------------G--------------GA--------------ACTGTGCCACATTTTGATTCATTTGATTCATAGATTGCTGATTAAAATACATCACATGGTAAGGAATATTGTGTTCTGTTTGTAAAAGTTTTGACTGCAAGACATCAGATAGAAGCAGCAGTCATGTCATACGCAACCGAA-TAACAATACAT-TTtt
gi|8 : -------------G--------------GA--------------ACT-----------TGA--CATCTAATTCATGAATTTCTGAT---GAT--------TAGAAAGGAATATTCTTTATTGCt
gi|8 : cattcatgtgagatatatatggacttttctaagGCAGCTTTATCCTATACAATAG-A-TTACTAGTAAA-TTCTATTATGAGCGGGGTCCTCCATGACCAATTGATCCTAAGagctttatcctatacaatagattactagtaaattctattatgagcggggtcctccatgaccaattgatcctaagattacttttctctcaccgctgagctcggatggacaattattctgctccaccaataaagcagggtgcagtataacatattatgcgtaacagtgttaaaccacacttaaactttaattaggcacttgtttgattatatgtggagttgataataaaactaaaaatgtcactaataagtgataaatgcccccgaagcaatctgtgtatgaaaatacatgcatgtatattgtggctattttgagggtttataataaatgccccggaagcaatctgtgtatgaaaatacatgtatgtaaattgtgactattttgaaggtta
gi|4 : cattcatgtgagatatatatggacttttctaagggaacttgacatctaattcatgaatttctgatgattagaaaggaatattctttattACTT-GGGCACCTGTTTGATCATAT---GGAGAGTTGATAA-TA----A--A-ACA------AAATAGGTCACTC-----------G-------TAAGTGATAAATACCCTGGAAGCTGTC--TGTAGA---TGAAAATATGT--------ATTTTGTAA-A--T-TGTTACTAT-TATTA------------------------AAAACA-CATGACCTTGA--------GCTACAGACCTGGATCTTG-GTGCAACACGT-TGTGATGTGATG---ATTATTTGTG--TAGTTATATCAAAACCCCTTAATGAATAAAAA-CATTAGACATGTTATGAATACCACTTTCattacttttctctcaccgctgagctcggatggacaattattctgctccaccaataaagcagggtgcagtataacatattatgcgtaacagtgttaaaccacacttaaactttaattaggcacttgtttgattatatgtggagttgataataaaactaaaaatgtcactaataagtgataaatgcccccgaagcaatctgtgtatgaaaatacatgcatgtatattgtggctattttgagggtttataataaatgccccggaagcaatctgtgtatgaaaatacatgtatgtaaattgtgactattttgaaggtta
gi|5 : ctaacagtctactagaaattaaaaatgtattatcgtaattatgcttttccagattatttttagttagttgttgaaagaacttttgtaatccaccctgtacaaccagtaatgagagacaatcagtgtgtcaccaccatgtacaatcattcatgtgagatatacatggacttattcaaagggaactagacatgtgattcatagatttgttacgatgcaactcatggtaagaaatattctttattgcttgtaaaagttttgactgtaagacatcagatagaagcagcagctatgtcatatgcaacagattactaataaagtctattttctgtggaattctccatgaccaattgatcttaagatcagatgtctctaaccacttaggtnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntgaattACTTCGGGCATCT-GTT-------TGATGAAT-GTTGATTA-TA----A--A-ACAAACTAAAAAT--GTCACCAAAATGTCACTTA-------TAAGTGATAAATGCCTCATAAGCAGTC--TGTGAA---TGAA--AATAC--------AT--------A--TATGTAACTAT-ATTTCGA-C----T-AATTTTGGGTTAATAAAAAAACTTGACCTTTA-CCTTTGAGTTACAGA------TCTTA-GTGCAACATAT-CATGATGTGATG---ATTATTTGTG--TAGTTATTT--------CGCAATGAATCAAAA-CATAAAATTGAATAC
gi|8 : gtttcagattatacttatttagttattgaaagaaactttgtaatcaaccctgtacaaccggtaatgagaaacagttgatgtggtaccacatctgtctgcaatcattcatgtgagatatgtagactatactaagggaactcaatatgtgattcacggatttctgatgatgtgactaatggttaggaatattctgtattgtttgtaaaagttttgactgttacacatcagatagaagcagcagctatgccatatgcaacagattaccaataaattctattttgggagggattctccatgtccgatcaatccttcaaatttcttgtctctcaccgctgaggttgggtnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnttTT-AGGCACTTGTTTGATTATATG-TGGAG--TTGATAA-TA----A--A-ACTAA----AAAT--GTCACTA-----------A-------TAAGTGATAAATGCCCCCGAAGCAATC--TGTGTA---TGAA--AATACATGCATGTAT--------A--T-TGTGGCTAT-TTTGAGG-GTT--T-AT---------AATAAActata
gi|6 : cattcatgtgagatatatatggacttttctaagggaacttgacatctaattcatgaatttctgatgattagaaaggaatattctttattgcagctttatcctatacaatagattactagtaaattctattatgagcggggtcctccatgaccaattgatcctaagattacttttctctcaccgctgagctcggatggacaattattctgctccaccaataaagcagggtgcagtataacatattatgcgtaacagtgttaaaccacacttaaactttaa-GGGCACCTGTTTGATTATAT---GAAGAGTTGATAATTA----A--ACA--------AAATGGGTCACTC-----------G-------TAAGTGGTtgccccggaagcaatctgtgtatgaaaatacatgtatgtaaattgtgactattttgaaggtta
gi|3 : actagaactaaaaatgtattatcataattatgcttttccatttcggattatatttagttagttattgaaagaacctttgtaatccaccctatacaacaagtaatgagagacaatcaatgtgtcaccaccatgtacaatcattcatttgagatatatatgtacttattgtaagggaactagacatgtgattcatagatttcttatgatgtgactcgtggtaaggaatattctttattgcttgtaaaagttttgactgtaagatatcagatagaagcagcagctatgtcatatacaacagattagcaataagttgtattttgtgtggaattctctatgacgaactgatcttaagatcacttaggtnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnagtaccccactctgaatttacaaATGTAGAGTTGATAG-TG----A--A-ACAGA----AAGT--GTTGCTA-----------A-------TAGGTGATAAATGCCCCAGAAGCAGTC--TGTGAA---TGAA--AATAC--------ATGTATGTATA--T-TCTGACTGT-TTTCAGG-G----T-T----------AATAAATAAACTTGACTTTGA-CCTATGA---ACAGA------TCTTT-GTGTAACAGGT-CATGT-TTGATG---ATTATTTATA--TGGTTATCTAGGAATCTTGCAATGAATGAAAA-CATTAAACAGGATATGAATAACACTTCCTGCATATACATGTATATAT
gi|22 : tttggttcaaaacttttcaaaaaaagatctgtttaaatattgaaaaatgttttaattgtacaactagaattttttttttatcataattatacttttccagttttaggttatattcatttagttactgaaagaacctttattatccaccctgtacaaccggttatgagagacaatcaatgtggtaccaccatgtacaatcattcatgtgaaatatatggactatagtaagggaactcgacatctaattcatggatttctgatgatgcgactcatggtgagaaatattctttattgcttgtaaaagttttgaatgtaaagcatcagatagaagcagcagctatgtcatatgcaatagattactaataaattttgttttgggtgggatcctccatgactgattgattctaagattacttgtgtctcaccactgaggcctggtnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnagagtatcagaatttactgatgatA-TA----ACCA-G--------AAAT--GTCACCA-----------G-------TAAGTGACAAAT-------GGCCTGTGATTGTAAAGATTGTA---AAAC--------GT--------GCTT-TGTGACTAT-ATTTGGA-ATTTCT-A----------AAGAAA--AATGTAACCTTGA-CATAgta
gi|16 : ----A--A-G--------AAAT--GTCA--A-----------AGGTTATTTAAGTAATAAATACCCTAAAAGTGGTC--TGTCAT---TGTA--AAGGT--------GT--------ACTT-TATGATTATATTTTGGATT----T-T----------AACAAAA-AAGTT-ACCTTGATCTTCTTACCTGTA--------TCTTGCATATAATCTGTCCATCTTGTGATGTTTATCATTTGTGACAAATCATTTTTAAACCCCTCA-TGAA
gi|27 : gtgaactaacac----A--A-G--------AAAT--GTCACTA-----------G-------TAAGTGACAAATGTCCCAGGcaactaagttag
gi|15 : TAATAAATGCCCCGGAAGCAATC--TGTGTA---TGAA--AATAC--------ATGTATGTAAA--T-TGTGACTAT-TTTGAAG-G----TTA----------ANNNNNNNNNNNNNNNNNNNN-NNNNNNNNNNNNNNN------NNNNN-NNNNNNNNNNN-NNNNNNNNNNNN---NNNNNNNNNN--NNNNNNNNNNNNNNNNNNNGATTGA--TAAAAGCATTAAACAGGATACAAATAATATT---TTTGTA--CATGTATGTATtgtgatctgtg
gi|26 : AATAAAAG-CATTAAACAGTATACGAATAACATTTT-TTTACATATATG
gi|25 : tAGAA-CATTAAACAGGATACAATTTACACTTTCTGTATATACATGTATATAT
6 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|17 ): CAGTGTATTGTTGTTTTATTTGATCAAATTGCTGCATCTGAAAGCTCCATTATTAAGGAAAATCATGTGACCTTGCTTGACATTTATATGATATGCTCACTGTTGCACAAAAACAGTATTTTAAAATTGTTGTTATAAAAATATTTTTAAAGCCTTAGTT
Unaligned ( gi|18 ): TACACTCCAGTGTATTCTTGTTGTTTTAAGATGATTTTGCTTTAAGATAATGTTTTATTAAATTGTTGCATCTTTAAAATCTGTAATGAAAGAAAATCATTTGGCCTTTTATGATATGTTCATTGTTGTTATTTTCAATAATCATAATTTTA
Unaligned ( gi|19 ): TGCATGTCAATGTATTGTTGTTGTTTTTAAGATGATTTTGCTTTAAGATCGTGTTTTATTAAATTGCTGCAATTTTATGAACCGTTTTGAAGGAAAGTCACATGACCTTTTATGATATGCTCATTGTTGCTATTTTCAAAACATAATTA
Unaligned ( gi|20 ): TACACTCCAGTGTATTCTTGTTGTTTTTACTTTAAGATAATGTTTTATTGAATTGTTGCATCTTTAAAATCTGTAATGAAGGAAAATCATTTGGTCTTTTACGATATGCTCATTGTTGCTAATTTCAAAAAACATAATTT
Unaligned ( gi|23 ): AAGTCATGTGACCTTGCTTCGCTTTTATATGATATGCTCATTATGTTGTTATTTTCAAAGACATA
Unaligned ( gi|24 ): TTGTTGTTTTGAGGAGTTTTCTTTAAGATCATGTTTGATTTTATCAAATTGCTGCAT
Alignments
lowQualScore : 1111111111111111111111111111111111111111111111111111111111 111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 1 111 11111 11 1111 1111111 11 22222222 5555555555555555555555555555555555555555555555555555555555 111 222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222 3333 1111 444444444444444444444 7777777777777 11111 111 11
lowQualScore : 0 444 1 88888 1 88 1 1 00 2 1 1 77 9999 7777 1111 8888 4444444 6 00 777 0 0 3 1 5 0 666 44444444 6 4444444444444444444444444444444444444444444444444444444444 99 1 222 1 8 1 3 22 999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999 6 3 2222 9999 222222222222222222222 8888 11 4 44 0 777 55 55 7777777777777 00000 666 66 1 5 1 5 5 33 5 5 3 000 77 00 3 3 0 1 4 3
lowQualScore : . ... . ..... . .. . . .. . . . .. .... .... .... .... ....... . .. ... . . . . . . ... ........ . .......................................................... .. . ... . . . . .. ................................................................................................................................. . . .... .... ..................... .... .. . .. . ... .. .. ............. ..... ... .. . . . . . .. . . . ... .. .. . . . . . .
lowQualScore : 6 000 0 00000 0 66 4 0 33 5 0 1 99 4444 1111 8888 5555 4444444 4 66 888 9 8 3 2 5 8 444 22222222 7 5555555555555555555555555555555555555555555555555555555555 22 0 777 0 0 0 8 00 000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 7 6 4444 1111 555555555555555555555 5555 55 0 66 3 000 55 55 2222222222222 00000 555 11 0 0 0 7 9 99 7 7 1 000 99 11 3 3 1 0 0 0
consensus : AACATAATTTCAAAATTGTTA---TAAAAANA----TTTAAAAA-GCCTTATTTTGGTTCAAAAAN-TTTCAAAGAAAAGATCTGTTTTAATATTGAAGAATGTTT--TAGTTGTGCTA----AC---AATC---TATT----ATCATAA-------TTATGCT--TTT---TCAGTTTCAGATTATATTCATTTAGTTATTGAAA-GAACCTTTGTAATCCACCCTGTACAACCGGTAATGAGAGACAATCGATGTGGCACCAC---CATGTACAATCATTCATGTGA--------GA-TATATATG---T--T------G-------------GA-------------AC-----------TCGA--CATCTGATTCATGGATTTCTGAT---GATGCGACTCATGGTGAGGAATATTCTGTATTGCTTGTAAAAGTTTTGACTGTAAGACATCAGATAGAAGCAGCAGCTATGTCATATGCAACAG-ATTACTAATAAATTCTGTTTTGGGTGGGATCCTCCATGACCGATTGATCCTAAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGACTT-GGGCACCTGTTTGATTATATGATGGAGAGTTGATAATAAAAC---AAA------------------T--GTCA----CTAGT-AAGTGATAAATGCCCCG-GAAGCGGTCTGTGAA---TGAAAA--TAC--ATG----T-----A-ATTGT-----GACTATTTTTAGGGTT--AATAA--AAAAACTTGACCTTGA-CNTAT-GAGCTACAGATCTTG-GTGCAACATGT-CATGATGTGATG---ATTATTTGTG--TGGTTATTTCGAAACCCCGCAATGAATNAAAACATTAAACAGGATACGAATAACACTTTCTTTATATACATGTATGTAT
Reference ( family-146 ) : AACATAATTTCAAAATTGTTA---TAAAAANA----TTTAAAAA-GCCTTATTTTGGTTCAAAAAT-TTTCAAAGAAAANATCTATTTTAATATTGAAGAATGTTT--TAATTGTGCTA----AC---AATC---TATT----ATCATAA-------TTATGCT--TTT---TCAGTTTCAGATTATATTCATTTAGTTATTGAAA-GAACCTTTGTAATCCACCCTGTACAACCGGTAATGAGAGACAATCGATGTGGTACCAC---CATGTACAATCATTCATGTGA--------GA-TATAT----------------G-------------GA-------------AC-----------TCGA--CATCTGATTCATGGATTTCTGAT---GATGCGACTCATGGTGAGGAATATTCTNTATTGCTTGTAAAAGTTTTGACTGTAAGACATCAGATAGAAGCAGCAGCTATGTCATATGCAACAG-ATNACTAANNAATTCTGTTTTGGGTGGGATCCTCCATGACCGATTGATCCTAAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACTT-GGGCACCTGTTTGATTATATGATGGAGAGTTGATAATAAAAC---AAA------------------T--GTCA----CTAGT-AAGTGATAAATGCCCCG-GAAGCAGTCTGTGAA---TGAAAA--TAC--AT-----T-----A-ATTGT-----GACTATTTTTAGGGTN--AATAA--AANAACTTGACCTTGA-CNTAT-GAGCTACAGATCTTG-GTGCAACATGT-CATGATGTGATG---ATTATTTGTG--TAGTTATTTCGAAACCCCGCAATGAATNAAAACATTAAACAGGATACGAATAACACTTTCTTTATATACATGTATATAT
gi|1 : AACATAATTTCAAAATTATTA---TGAAAATA----TTTAAAAC-GCATTATCTTGGTTAAAAAAA-T--CAAATAACAGATCTGTTTTAATATTAAAATATGTTT--TAGTTGTGCTA----AC---AATC---TATT----ATCATAA-------TTATACTA-TTT---TCAGTTTCAGATTATATTCATTAAGTTATTGAAA-GAACCTTTGTAATCCACCCTGTACAACCGGTAACGAGAGACAATCAATGTGGCACCAC---CATGTACAATCATTCTTGT-----------A-TATAT----------------G-------------GA-------------AC-----------TCGA--CATCTGATTCGTGGACTTCTGAT---GGTGCGACTCATGGTGATGAATATTCTGTATTGCTTGTAAAAGTTTTGACTGTAAGACATCAGATAGAAGCAGCAGCTATGTCATATGCAATAG-ATAACTAAACAATTCTGTTTTGGGTGGGATCTTCTATGACTGATTGAACCTGAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGACTT-GGGCACCTCGTTCATTATATAATGGAGAGTTGATGATAAAA----AAA------------------T--GTCA----CTAAT-AAGTGATAAATACCCAA-GGAGCAGTGTGTAAA---TGAATA--GAC--AT-------------ATTGC-----GACTATCTTTAGAGTA--AATAA--AACAACTTGACCTTGA-CGTAT-GAGCTACAGGTCTTG-GTGCAACATGT-CATGAAGTGATG---ATTATTTGTG--TGGTTATTTCAAATCCCCACACTGAATTAAAACATTAAACAGGATACAAATAACATTTTCTTTATATTCATGTGTGTAT
gi|10 : TA----AA---AAAT---TATT----AGCATAA-------TTATCCT--TTTTTTTCAGTTTCAGATTGTATTCATTTAGTTATCAAAA-GAACCTTTGTAATCCACCCTGTACAACTGGCAATGAGAGACAATCTATGTGGTACCAC---CATGTACAATCAGTCATGTGA--------GA-TATAT----------------GGACTATTCTAAGTGA-------------AC-----------TTGA--CATCTTATTCATGGATTTCTGAC---GATGCAACTCATGGTGAGGAATATTCTGTATTGCTTGTTAAAGTTTTGACTGTAGCACATCATATAGAAGCAGCAGTTATATCATATGCAA
gi|11 : aatAACATAATTTCAAAACTGTTGCTCTAAATCTA----TTTAACAA-GCCTTATTTT-GTTAAAAAAGAATTCAAAGAAAATATCTATTTTAATATTGAAGAATGTTT--t
gi|12 : ttacacttcagtgtattgttgttgtttttaagattttgctttaagatcatgttttattttatcaactttccgcatcttcaaattcctttattaaggaaaatcatgtgaccttgcttgacttttatatggtatgctcattgctgctattttcaaaAAA-AAACCTTTGTAATCCACCCTGTACAACATGTAATAGGAGA---------------CAC---CATGTACAATTGTTCATGCAAACTATTTTGACTATACTTGG------------G-------------GA-------------ACTGTGCCACATTTTGATTCATTTGATTCATAGATTGCTGATTAAAATACATCACATGGTAAGGAATATTGTGTTCTGTTTGTAAAAGTTTTGACTGCAAGACATCAGATAGAAGCAGCAGTCATGTCATACGCAACCGAATAAC-AATACATTTTacg
gi|13 : AAA-GAACCTTTGTAATCCACCCTGTACAACATGTAATAGGAGA---------------CAC---CATGTACAATTGTTCATGCAAACTATTTTGACTATACTTAG------------G-------------GA-------------ACTGTGCCACATTTTGATTCATTTGATTCATAGATTGCTGATTAAAATACATCACATGGTAAGGAATATTGTGTTCTGTTTGTAAAAGTTTTGACTGCAGGACATCAGATAGAAGCAGCAGTCATGTCATACGCAACCGAATAAC-AATACATT
gi|14 : ACATAATT-CAAAATTGTTA---TAAAAACAAAAA---AAAAA-GTTTTATTTTGGTTCAGAAAT-TTTCAAAGAGAATATCTTCTTTAACATTGAAAAATGTTT--CAGTTGTGCTA----AC---AATC---TACT----A
gi|15 : ttacactttagtgtattgttgtttttaagatcatgttttattttatcgaattgttgcatctttaggaaaatcatgtgacctttcttgTAATAAATGCCCCG-GAAGCAATCTGTGTA---TGAAAA--TAC--ATG----TATGTAA-ATTGT-----GACTATTTTGAAGGTT--AANNN--NNNNNNNNNNNNNNNN-NNNNN-NNNNNNNNNNNNNNN-NNNNNNNNNNN-NNNNNNNNNNNN---NNNNNNNNNN--NNNNNNNNNNNNNNNNNNNNGATTGATAAAAGCATTAAACAGGATACAAATAATATTTT-----TGTACATGTATGTATgaaattaaaaactatataattatgtt
gi|16 : TAACACAAG---AAA------------------T--GTCAAAGGTTATTTAAGTAATAAATACCCTA-AAAGTGGTCTGTCAT---TGTAAAGGTGT--AC-----T--------TTAT-----GATTATATTTTGGATTTTAACAA--AAAAGTT--ACCTTGATCTTCT-TACCTGT--ATCTTGCATATAATCTGTCCATCTTGTGATGTTTATCATTTGTGACAAATCATTTTTAAACCCCTC-ATGAACAA
gi|2 : gtgaacAACATAATTTCAAAATTATTA---TGAAAAGA----TTTAAAAC-GCCTTATTTTGATTTAAAGAA-ATTCAAAGAAAAGATCTGTTATAATATTAAAGAATGTTT--TAATTGTGCTA----AC---AATC---TATT----ATCATAA-------TTATACT--TT-----------CAGATTATATTCATTTAGTTATTGAAA-GAACCTTTGTAATCCACCCTGTACATCCGTTAACGAGAGACAATCAATGTGGCACCAC---CATGTACAATCATTCTAGTGA--------GA-TATAT----------------G-------------GA-------------AC-----------TCGA--CATCTGATTCGTGGCTTTCTGAT---GGTGCGACTCATGGTGAGGAATATTCTGTATTGCTTTT-AAAGTTTTGATTGTAAGACATCAGATAAAAGCAGCAGCTATGTCATATGCAATAT-ATAACTAAACAATTCTGTTTTGGGTGGGATCTTCCATGACCGACTGATCCTAAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTT-GGGCACCTAGTTAATTTTATAATGGAGAGTTGATGATAAAACAAAAAA------------------T--GTCA----CTTAT-AATTGTTAAATACCTAA-GAAGCAGTGTGTAAA---TGAAAA--TAC--AT-------------ATTGC-----GACTA-TTTTAGAGTT--AATAA--AACACCTTGACATTGA-CGTAT-GAGTTACAGATCTTG-GTGAAACATGT-CATGAAGTGATG---ATTATTTGTG--TGGTTATTTCAAATCTCCACACCGAATTAAAACATTAAACAGGATACAAATAACATGTTCTTTATctaagttag
gi|21 : AAGATCTATTTTAATATTGAAGAAAGTTTAATAATC-TACTAGAAAAT---AATTATTTGTT----ATCATAA-------TTATGATATTTT---TCAGTTGCAGGTTATATTTATTAAGTTATTAAAA-TAACCTTTGTAGTCCACCCT
gi|22 : ---AAA------------------T--GTCA----CCAGT-AAGTGACAAATGGCCTGTGA------TTGTAAAGATTGTAAA---AC--GT-----G-----C-TTTGT-----GACTATATTTGGAATT--TCTAAAGAAAAATGTAACCTTGA-CATA
gi|25 : ataaccagAGAACATTAAACAGGATACAATTTACACTTTCTGTATATACATGTATATAT
gi|26 : AATAAAAGCATTAAACAGTATACGAATAACA-TTTTTTTACATATATGg
gi|27 : tAAG---AAA------------------T--GTCA----CTAGT-AAGTGACAAATGTCCCA-GGTGTGATCTGTG
gi|3 : TTTGGTTCAAAACT-TTTCAAA-AAAAGATCTGTTTAAATATTGAAAAATGTTT--TAATTGTAC-A----ACTAGAATT---TTTTTTTTATCATAA-------TTATACT--TTT---CCAGTTTTAGGTTATATTCATTTAGTTACTGAAA-GAACCTTTATTATCCACCCTGTACAACCGGTTATGAGAGACAATCAATGTGGTACCAC---CATGTACAATCATTCATGTGA--------AA-TATAT----------------G-------------GACTATAGTAAGGGAAC-----------TCGA--CATCTAATTCATGGATTTCTGAT---GATGCGACTCATGGTGAGAAATATTCTTTATTGCTTGTAAAAGTTTTGAATGTAAAGCATCAGATAGAAGCAGCAGCTATGTCATATGCAATAG-ATTACTAATAAATTTTGTTTTGGGTGGGATCCTCCATGACTGATTGATTCTAAG
gi|3 : TGATGATATG-T--AGAGTTGATAGTGAAAC---AGAAAG---------------T--GTTG----CTAAT-AGGTGATAAATGCCCCA-GAAGCAGTCTGTGAA---TGAAAA--TAC--ATGTATGT-----ATATTCT-----GACTGTTTTCAGGGTT--AATAA--ATAAACTTGACTTTGA-CCTAT-GA---ACAGATCTTT-GTGTAACAGGT-CATG-TTTGATG---ATTATTTATA--TGGTTATCTAGGAATCTTGCAATGAATGAAAACATTAAACAGGATATGAATAACACTTCCTGCATATACATGTATATATattacttgtgtctcaccactgaggcctggtnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnagagtatcagaatttactgatgatatgtagagttgatagtgaaacagaaagtgttgctaataggtgataaatgccccagaagcagtctgtgaatgaaaatacatgtatgtatattctgactgttttcagggttaataaataaacttgactttgacctatgaacagatctttgtgtaacaggtcatgtttgatgattatttatatggttatctaggaatcttgcaatgaatgaaaacattaaacaggatatgaataacacttcctgcatatacatgtatatatgta
gi|4 : tttggttcaaaacttttcaaaaaaagatctgtttaaatattgaaaaatgttttaattgtacaactagaattttttttttatcataattatacttttccagttttaggttatattcatttagttactgaaagaacctttattatccaccctgtacaaccggttatgagagacaatcaatgtggtaccaccatgtacaatcattcatgtgaaatatatggactatagtaagggaactcgacatctaattcatggatttctgatgatgcgactcatggtgagaaatattctttattgcttgtaaaagttttgaatgtaaagcatcagatagaagcagcagctatgtcatatgcaatagattactaataaattttgttttgggtgggatcctccatgactgattgattctaagattacttgtgtctcaccactgaggcctggtnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnagagtatcagaatttacTA----AA---AATG---TATT----ATCGTAA-------TTATGCT--TTT---CCAG------ATTATTTTTAGTTAGTTGTTGAAA-GAACTTTTGTAATCCACCCTGTACAACCAGTAATGAGAGACAATCAGTGTGTCACCAC---CATGTACAATCATTCATGTGA--------GA-TATACATGGACTTATTCAAAGG-------------GA-------------AC-----------TAGA--CATGTGATTCATAGATTTGTTAC---GATGCAACTCATGGTAAGAAATATTCTTTATTGCTTGTAAAAGTTTTGACTGTAAGACATCAGATAGAAGCAGCAGCTATGTCATATGCAACAG-ATTACTAATAAAGTCTATTTTCTGTGGAATTCTCCATGACCAATTGATCTTAAGgta
gi|4 : ctaacagtctactagaaatACTT-GGGCACCTGTTTGATCATATG---GAGAGTTGATAATAAAAC---AAAA-----------------TAGGTCA----CTCGT-AAGTGATAAATACCCTG-GAAGCTGTCTGTAGA---TGAAAA--TATGTAT-----T--------TTGT-----AA--ATTGTTACTATT--ATTAA--AAACACATGACCTTGA-GCTACAGACCTG--GATCTTG-GTGCAACACGT-TGTGATGTGATG---ATTATTTGTG--TAGTTATATCAAAACCCCTTAATGAATAAAAACATTAGACATGTTATGAATACCACTTTCatcagatgtctctaaccacttaggtnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntgaattacttgggcacctgtttgatcatatggagagttgataataaaacaaaataggtcactcgtaagtgataaataccctggaagctgtctgtagatgaaaatatgtattttgtaaattgttactattattaaaaacacatgaccttgagctacagacctggatcttggtgcaacacgttgtgatgtgatgattatttgtgtagttatatcaaaaccccttaatgaataaaaacattagacatgttatgaataccactttc
gi|5 : ctaacagtctactagaaattaaaaatgtattatcgtaattatgcttttccagattatttttagttagttgttgaaagaacttttgtaatccaccctgtacaaccagtaatgagagacaatcagtgtgtcaccaccatgtacaatcattcatgtgagatatacatggacttattcaaagggaactagacatgtgattcatagatttgttacgatgcaactcatggtaagaaatattctttattgcttgtaaaagttttgactgtaagacatcagatagaagcagcagctatgtcatatgcaacagattactaataaagtctattttctgtggaattctccatgaccaattgatcttaagatcagatgtctctaaccacttaggtnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntgaattGTTTCAGATTATACTTATTTAGTTATTGAAA-GAAACTTTGTAATCAACCCTGTACAACCGGTAATGAGAAACAGTTGATGTGGTACCACATCTGTCTGCAATCATTCATGTGA--------GA-TATGTAGACTATACTAAG---G-------------GA-------------AC-----------TCAA--TATGTGATTCACGGATTTCTGAT---GATGTGACTAATGGTTAGGAATATTCTGTATTGTTTGTAAAAGTTTTGACTGTTACACATCAGATAGAAGCAGCAGCTATGCCATATGCAACAG-ATTACCAATAAATTCTATTTTGGGAGGGATTCTCCATGTCCGATCAATCCT
gi|5 : ACTTCGGGCATCTGTTTGAT---------GAATGTTGATTATAAAAC---AAACTAAAAATGTCACCAAAAT--GTCA----CTTAT-AAGTGATAAATGCCTCA-TAAGCAGTCTGTGAA---TGAAAA--TAC--ATATATGT-----A-ACTATATTTCGACTAATTTT-GGGTT--AATAA--AAAAACTTGACCTTTA-CCTTT-GAGTTACAGATCTTA-GTGCAACATAT-CATGATGTGATG---ATTATTTGTG--TAGTTATTT--------CGCAATGAATCAAAACATAAAATTGAATACtcaaatttcttgtctctcaccgctgaggttgggtnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnttacttcgggcatctgtttgatgaatgttgattataaaacaaactaaaaatgtcaccaaaatgtcacttataagtgataaatgcctcataagcagtctgtgaatgaaaatacatatatgtaactatatttcgactaattttgggttaataaaaaaacttgacctttacctttgagttacagatcttagtgcaacatatcatgatgtgatgattatttgtgtagttatttcgcaatgaatcaaaacataaaattgaatacctata
gi|6 : gtttcagattatacttatttagttattgaaagaaactttgtaatcaaccctgtacaaccggtaatgagaaacagttgatgtggtaccacatctgtctgcaatcattcatgtgagatatgtagactatactaagggaactcaatatgtgattcacggatttctgatgatgtgactaatggttaggaatattctgtattgtttgtaaaagttttgactgttacacatcagatagaagcagcagctatgccatatgcaacagattaccaataaattctattttgggagggattctccatgtccgatcaatccttcaaatttcttgtctctcaccgctgaggttgggtnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnttCTA----AA---AATG---TATT----ATCATAA-------TTATGCT--TTT---CCA-TTTCGGATTATATTTAGTTAGTTATTGAAA-GAACCTTTGTAATCCACCCTATACAACAAGTAATGAGAGACAATCAATGTGTCACCAC---CATGTACAATCATTCATTTGA--------GA-TATATATGTACTTATTGTAAGG-------------GA-------------AC-----------TAGA--CATGTGATTCATAGATTTCTTAT---GATGTGACTCGTGGTAAGGAATATTCTTTATTGCTTGTAAAAGTTTTGACTGTAAGATATCAGATAGAAGCAGCAGCTATGTCATATACAACAG-ATTAGCAATAAGTTGTATTTTGTGTGGAATTCTCTATGACGAACTGATCTTAAGctata
gi|6 : actagaa-GGGCACCTGTTTGATTATATGA---AGAGTTGATAATTAAACA--AAA------------------TGGGTCA----CTCGT-AAGTGGTatcacttaggtnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnagtaccccactctgaatttacaagggcacctgtttgattatatgaagagttgataattaaacaaaatgggtcactcgtaagtggt
gi|7 : actagaactaaaaatgtattatcataattatgcttttccatttcggattatatttagttagttattgaaagaacctttgtaatccaccctatacaacaagtaatgagagacaatcaatgtgtcaccaccatgtacaatcattcatttgagatatatatgtacttattgtaagggaactagacatgtgattcatagatttcttatgatgtgactcgtggtaaggaatattctttattgcttgtaaaagttttgactgtaagatatcagatagaagcagcagctatgtcatatacaacagattagcaataagttgtattttgtgtggaattctctatgacgaactgatcttaagatcacttaggtnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnagtaccccactctgaatttacaa---AAT----TGTT----GTTATAAAATTTTTTTATTTT--TTT---TCAGTATCAGATTATATTCATTTAGTTATTGAAAAGAACCTTTGTAATCCACCCTGTACAACTGGTAATGAGAGACAATCAATGTGGTACCAT---CGTGTACAATCATTCATGTGA--------GA-TATAG----------------G-------------GACTTTACTAAGATAAC-----------TCAA--CACCTGGTTCATGGAATTCTGAT---GATGCGACTCATGGTGAGGAAAATTCTTTATTGCTTGTAAAAGTTTTGACTGTAAGACATCAGATAGAAGCAGCAGGTATGTCATATGCAATAG-ATTACTAAACAAATCTGTTTTGGGTGGGATCCTCCATGATCGATT
gi|8 : ttacgcttagtttattgttgttgtttttaggagtttgcttaaaggtgaagttttattttatcaaattcctgcagttttaaattattttaaagaaaataatgtgaccttgcttgacttttatatgatttgcgcattgttgcaatttacaaaaacataatttcaaCATTCATGTGA--------GA-TATATATGGACTTTTCTAAG-G-------------GA-------------AC-----------TTGA--CATCTAATTCATGAATTTCTGAT---GAT--------TAGAAAGGAATATTCTTTATTGC
gi|8 : GCAGCTTTATCCTATACAATAG-ATTACTAGTAAATTCTATTATGAGCGGGGTCCTCCATGACCAATTGATCCTAAGagctttatcctatacaatagattactagtaaattctattatgagcggggtcctccatgaccaattgatcctaagattacttttctctcaccgctgagctcggatggacaattattctgctccaccaataaagcagggtgcagtataacatattatgcgtaacagtgttaaaccacacttaaactttaattaggcacttgtttgattatatgtggagttgataataaaactaaaaatgtcactaataagtgataaatgcccccgaagcaatctgtgtatgaaaatacatgcatgtatattgtggctattttgagggtttataataaatgccccggaagcaatctgtgtatgaaaatacatgtatgtaaattgtgactattttgaaggtta
gi|8 : cattcatgtgagatatatatggacttttctaagggaacttgacatctaattcatgaatttctgatgattagaaaggaatattctttattTT-AGGCACTTGTTTGATTATATG-TG--GAGTTGATAATAAAACTAAAAA------------------T--GTCA----CTAAT-AAGTGATAAATGCCCCC-GAAGCAATCTGTGTA---TGAAAA--TAC--ATGCATGT-----ATATTGT-----GGCTATTTTGAGGGTT--TATAA--attacttttctctcaccgctgagctcggatggacaattattctgctccaccaataaagcagggtgcagtataacatattatgcgtaacagtgttaaaccacacttaaactttaattaggcacttgtttgattatatgtggagttgataataaaactaaaaatgtcactaataagtgataaatgcccccgaagcaatctgtgtatgaaaatacatgcatgtatattgtggctattttgagggtttataataaatgccccggaagcaatctgtgtatgaaaatacatgtatgtaaattgtgactattttgaaggtta
gi|8 : cattcatgtgagatatatatggacttttctaagggaacttgacatctaattcatgaatttctgatgattagaaaggaatattctttattgcagctttatcctatacaatagattactagtaaattctattatgagcggggtcctccatgaccaattgatcctaagattacttttctctcaccgctgagctcggatggacaattattctgctccaccaataaagcagggtgcagtataacatattatgcgtaacagtgttaaaccacacttaaactttaaTAATAAATGCCCCG-GAAGCAATCTGTGTA---TGAAAA--TAC--ATG----TATGTAA-ATTGT-----GACTATTTTGAAGGTT--Ataaatgccccggaagcaatctgtgtatgaaaatacatgtatgtaaattgtgactattttgaaggtta
gi|9 : cattcatgtgagatatatatggacttttctaagggaacttgacatctaattcatgaatttctgatgattagaaaggaatattctttattgcagctttatcctatacaatagattactagtaaattctattatgagcggggtcctccatgaccaattgatcctaagattacttttctctcaccgctgagctcggatggacaattattctgctccaccaataaagcagggtgcagtataacatattatgcgtaacagtgttaaaccacacttaaactttaattaggcacttgtttgattatatgtggagttgataataaaactaaaaatgtcactaataagtgataaatgcccccgaagcaatctgtgtatgaaaatacatgcatgtatattgtggctattttgagggtttaACATAATT-CAAAATTGTTA---AAAAAAAA----ACAAAAAAAGCTTTATTTTGGTTCAGAAAT-TTTCAAAGAAAATATGTACTTTAATATTGAAGAATGTTT--CAGTTGTGCTA----AC---AATC---TACT----A--GAAA-------TTAA------TT---TAAAATAGAGATAATACTTATTTAGTTATTGAAA-GAACCTTTGTAATCCACCCTGTACAACTGGTAATGAGAAACAATTGATGTGGTACCAC---CATCTGCAATCATTCATGTGA--------GA-TATGTAGACTATACTAAG---G-------------GA-------------AC-----------TCAA--TATGTGATTCAAGGAT
6 sequences could not be aligned to this reference sequence:
Unaligned ( gi|17 ): CAGTGTATTGTTGTTTTATTTGATCAAATTGCTGCATCTGAAAGCTCCATTATTAAGGAAAATCATGTGACCTTGCTTGACATTTATATGATATGCTCACTGTTGCACAAAAACAGTATTTTAAAATTGTTGTTATAAAAATATTTTTAAAGCCTTAGTT
Unaligned ( gi|18 ): TACACTCCAGTGTATTCTTGTTGTTTTAAGATGATTTTGCTTTAAGATAATGTTTTATTAAATTGTTGCATCTTTAAAATCTGTAATGAAAGAAAATCATTTGGCCTTTTATGATATGTTCATTGTTGTTATTTTCAATAATCATAATTTTA
Unaligned ( gi|19 ): TGCATGTCAATGTATTGTTGTTGTTTTTAAGATGATTTTGCTTTAAGATCGTGTTTTATTAAATTGCTGCAATTTTATGAACCGTTTTGAAGGAAAGTCACATGACCTTTTATGATATGCTCATTGTTGCTATTTTCAAAACATAATTA
Unaligned ( gi|20 ): TACACTCCAGTGTATTCTTGTTGTTTTTACTTTAAGATAATGTTTTATTGAATTGTTGCATCTTTAAAATCTGTAATGAAGGAAAATCATTTGGTCTTTTACGATATGCTCATTGTTGCTAATTTCAAAAAACATAATTT
Unaligned ( gi|23 ): AAGTCATGTGACCTTGCTTCGCTTTTATATGATATGCTCATTATGTTGTTATTTTCAAAGACATA
Unaligned ( gi|24 ): TTGTTGTTTTGAGGAGTTTTCTTTAAGATCATGTTTGATTTTATCAAATTGCTGCAT
Alignments
lowQualScore : 111111111111111111111111111111111111111111111 1111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 1 111 11111 1111 1111111 11 222222222222222222222222222222222222222222222 33333333333 111 2222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222 3333 1111 444444444444444444444 55555555555555555555555555 11111 111 11
lowQualScore : 0 444 1 88888 1 88 1 1 1 777 2 0 0 77 9999 7777 1111 8888 4444444 6 00 777 0 0 3 1 1 5 1 666 777777777777777777777777777777777777777777777 3 555 11111111111 99 1 222 1 4 7777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777 6 3 2222 9999 222222222222222222222 8888 11 4 0 3 2 0 66666666666666666666666666 4 00000 55 66 5 1 5 5 33 5 5 3 000 77 00 3 3 0 1 4 3
lowQualScore : . ... . ..... . .. . . . ... . . . .. .... .... .... .... ....... . .. ... . . . . . . . ... ............................................. . ... ........... .. . ... . . ............................................................................................................................... . . .... .... ..................... .... .. . . . . . .......................... . ..... .. .. . . . . .. . . . ... .. .. . . . . . .
lowQualScore : 6 000 0 00000 0 66 4 0 0 333 5 7 4 99 4444 1111 8888 5555 4444444 4 66 888 9 8 3 2 3 5 8 444 888888888888888888888888888888888888888888888 3 888 77777777777 22 0 777 4 0 0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 7 6 4444 1111 555555555555555555555 5555 55 0 4 3 5 3 11111111111111111111111111 0 00000 55 11 0 0 7 9 99 7 7 1 000 99 11 3 3 1 0 0 0
consensus : AACATAATTTCAAAATTGTTA---TAAAAANA----TTTAAAAA-GCCTTATTTTGGTTCAAAAANT-TTCAAAGAAAAGATCTGTTTTAATATTGAAGAATGTTT--TAGTTGTGCTA----AC---AATC---TATT----ATCATAA-------TTATGCT--TTT---TCAGTTTCAGATTATATTCATTTAGTTATTGAAA-GAACCTTTGTAATCCACCCTGTACAACCGGTAATGAGAGACAATCGATGTGGCACCAC---CATGTACAATCATTCATGTGAGATAT----A-----T-----A-----TA------C--------TNAG--G-G---AAC-----------TCGA--CATCTGATTCATGGATTTCTGAT---GATGCGACTCATGGTGAGGAATATTCTGTATTGCTTGTAAAAGTTTTGACTGTAAGACATCAGATAGAAGCAGCAGCTATGTCATATGCAACAGATTACT-AATAAATTCTGTTTTGGGTGGGATCCTCCATGACCGATTGATCCTAAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGACTT-GGGCACCTGTTTGATTATATGATGGAGAGTTGATAATAAAAC---AAA------------------T--GTCA----CTAGT-AAGTGATAAATGCCCCGGAAGCGGTCTGTGAATGAAAATACAT----GT-----A-----A--------TT-GT-----GACTATTTTTAGGG--TTAATAA--AAAAACTTGACCTTGA-CNTAT-GAGCTACAGATCTTG-GTGCAACATGT-CATGATGTGATG---ATTATTTGTG--TGGTTATTTCGAAACCCCGCAATGAATNAAAACATTAAACAGGATACGAATAACACTTTCTTTATATACATGTATGTAT
Reference ( family-146 ) : AACATAATTTCAAAATTGTTA---TAAAAANA----TTTAAAAA-GCCTTATTTTGGTTCAAAAANT-TTCAAAGAAAAGATCTGTTTTAATATTGAAGAATGTTT--TAGTTGTGCTA----AC---AATC---TATT----ATCATAA-------TTATGCT--TTT---TCAGTTTCAGATTATATTCATTTAGTTATTGAAA-GAACCTTTGTAATCCACCCTGTACAACCGGTAATGAGAGACAATCGATGTGGCACCAC---CATGTACAATCATTCATGTGAGATAT----A-----T-----A-----TG------T--------T-----G-G---AAC-----------TCGA--CATCTGATTCATGGATTTCTGAT---GATGCGACTCATGGTGAGGAATATTCTGTATTGCTTGTAAAAGTTTTGACTGTAAGACATCAGATAGAAGCAGCAGCTATGTCATATGCAACAGATTACT-AATAAATTCTGTTTTGGGTGGGATCCTCCATGACCGATTGATCCTAAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGACTT-GGGCACCTGTTTGATTATATGATGGAGAGTTGATAATAAAAC---AAA------------------T--GTCA----CTAGT-AAGTGATAAATGCCCCGGAAGCGGTCTGTGAATGAAAATACAT----GT-----A-----A--------TT-GT-----GACTATTTTTAGGG--TTAATAA--AAAAACTTGACCTTGA-CNTAT-GAGCTACAGATCTTG-GTGCAACATGT-CATGATGTGATG---ATTATTTGTG--TGGTTATTTCGAAACCCCGCAATGAATNAAAACATTAAACAGGATACGAATAACACTTTCTTTATATACATGTATGTAT
gi|1 : AACATAATTTCAAAATTATTA---TGAAAATA----TTTAAAAC-GCATTATCTTGGTTAAAAAAAT---CAAATAACAGATCTGTTTTAATATTAAAATATGTTT--TAGTTGTGCTA----AC---AATC---TATT----ATCATAA-------TTATACTA-TTT---TCAGTTTCAGATTATATTCATTAAGTTATTGAAA-GAACCTTTGTAATCCACCCTGTACAACCGGTAACGAGAGACAATCAATGTGGCACCAC---CATGTACAATCATTCTTGT-----AT----A-----T-----A-----TG-----------------------G---AAC-----------TCGA--CATCTGATTCGTGGACTTCTGAT---GGTGCGACTCATGGTGATGAATATTCTGTATTGCTTGTAAAAGTTTTGACTGTAAGACATCAGATAGAAGCAGCAGCTATGTCATATGCAATAGATAACT-AAACAATTCTGTTTTGGGTGGGATCTTCTATGACTGATTGAACCTGAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGACTT-GGGCACCTCGTTCATTATATAATGGAGAGTTGATGATAAAA----AAA------------------T--GTCA----CTAAT-AAGTGATAAATACCCAAGGAGCAGTGTGTAAATGAATAGACAT-----------------A--------TT-GC-----GACTATCTTTAGAG--TAAATAA--AACAACTTGACCTTGA-CGTAT-GAGCTACAGGTCTTG-GTGCAACATGT-CATGAAGTGATG---ATTATTTGTG--TGGTTATTTCAAATCCCCACACTGAATTAAAACATTAAACAGGATACAAATAACATTTTCTTTATATTCATGTGTGTAT
gi|10 : TA----AA---AAAT---TATT----AGCATAA-------TTATCCT--TTTTTTTCAGTTTCAGATTGTATTCATTTAGTTATCAAAA-GAACCTTTGTAATCCACCCTGTACAACTGGCAATGAGAGACAATCTATGTGGTACCAC---CATGTACAATCAGTCATGTGAGATAT----A-----T-----GGAC--TA------T--------TCTAA-GTG---AAC-----------TTGA--CATCTTATTCATGGATTTCTGAC---GATGCAACTCATGGTGAGGAATATTCTGTATTGCTTGTTAAAGTTTTGACTGTAGCACATCATATAGAAGCAGCAGTTATATCATATGCAA
gi|11 : aatAACATAATTTCAAAACTGTTGCTCTAAATCTA----TTTAACAA-GCCTTATTTTG-TTAAAAAAGAATTCAAAGAAAATATCTATTTTAATATTGAAGAATGTTT--t
gi|12 : ttacacttcagtgtattgttgttgtttttaagattttgctttaagatcatgttttattttatcaactttccgcatcttcaaattcctttattaaggaaaatcatgtgaccttgcttgacttttatatggtatgctcattgctgctattttcaaaAAA-AAACCTTTGTAATCCACCCTGTACAACATGTAATAGGAGACA---------------C---CATGTACAATTGTTCATGCAAACTATTTTGAC----T-----A-----TA------C--------TTGG--G-G---AACTGTGCCACATTTTGATTCATTTGATTCATAGATTGCTGATTAAAATACATCACATGGTAAGGAATATTGTGTTCTGTTTGTAAAAGTTTTGACTGCAAGACATCAGATAGAAGCAGCAGTCATGTCATACGCAACCGAATAAC-AATACATTTTacg
gi|13 : AAA-GAACCTTTGTAATCCACCCTGTACAACATGTAATAGGAGACA---------------C---CATGTACAATTGTTCATGCAAACTATTTTGAC----T-----A-----TA------C--------TTAG--G-G---AACTGTGCCACATTTTGATTCATTTGATTCATAGATTGCTGATTAAAATACATCACATGGTAAGGAATATTGTGTTCTGTTTGTAAAAGTTTTGACTGCAGGACATCAGATAGAAGCAGCAGTCATGTCATACGCAACCGAATAAC-AATACATT
gi|14 : ACATAATT-CAAAATTGTTA---TAAAAACAAAAA---AAAAA-GTTTTATTTTGGTTCAGAAATT-TTCAAAGAGAATATCTTCTTTAACATTGAAAAATGTTT--CAGTTGTGCTA----AC---AATC---TACT----A
gi|15 : ttacactttagtgtattgttgtttttaagatcatgttttattttatcgaattgttgcatctttaggaaaatcatgtgacctttcttgTAATAAATGCCCCGGAAGCAATCTGTGTATGAAAATACAT----GT-----ATGTAAA--------TT-GT-----GACTATTTTGAAGG--TTAANNN--NNNNNNNNNNNNNNNN-NNNNN-NNNNNNNNNNNNNNN-NNNNNNNNNNN-NNNNNNNNNNNN---NNNNNNNNNN--NNNNNNNNNNNNNNNNNNNNGATTGATAAAAGCATTAAACAGGATACAAATAATATTTT-----TGTACATGTATGTATgaaattaaaaactatataattatgtt
gi|16 : TAACACAAG---AAA------------------T--GTCAAAGGTTATTTAAGTAATAAATACCCTAAAAGTGGTCTGTCATTGTAA--AGGT----GT-----A-----CT-------TT-AT-----GATTATATTTTGGATTTTAACAA--AAAAGTT--ACCTTGATCTTCT-TACCTGT--ATCTTGCATATAATCTGTCCATCTTGTGATGTTTATCATTTGTGACAAATCATTTTTAAACCCCTC-ATGAACAA
gi|2 : gtgaacAACATAATTTCAAAATTATTA---TGAAAAGA----TTTAAAAC-GCCTTATTTTGATTTAAAGAAA-TTCAAAGAAAAGATCTGTTATAATATTAAAGAATGTTT--TAATTGTGCTA----AC---AATC---TATT----ATCATAA-------TTATACT--TT-----------CAGATTATATTCATTTAGTTATTGAAA-GAACCTTTGTAATCCACCCTGTACATCCGTTAACGAGAGACAATCAATGTGGCACCAC---CATGTACAATCATTCTAGTGAGATAT----A-----T----------------------------------G-G---AAC-----------TCGA--CATCTGATTCGTGGCTTTCTGAT---GGTGCGACTCATGGTGAGGAATATTCTGTATTGCTTTTAAA-GTTTTGATTGTAAGACATCAGATAAAAGCAGCAGCTATGTCATATGCAATATATAACT-AAACAATTCTGTTTTGGGTGGGATCTTCCATGACCGACTGATCCTAAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTT-GGGCACCTAGTTAATTTTATAATGGAGAGTTGATGATAAAACAAAAAA------------------T--GTCA----CTTAT-AATTGTTAAATACCTAAGAAGCAGTGTGTAAATGAAAATACAT-----------------A--------TT-GC-----GACTA-TTTTAGAG--TTAATAA--AACACCTTGACATTGA-CGTAT-GAGTTACAGATCTTG-GTGAAACATGT-CATGAAGTGATG---ATTATTTGTG--TGGTTATTTCAAATCTCCACACCGAATTAAAACATTAAACAGGATACAAATAACATGTTCTTTATctaagttag
gi|21 : AAGATCTATTTTAATATTGAAGAAAGTTTAATAATC-TACTAGAAAAT---AATTATTTGTT----ATCATAA-------TTATGATATTTT---TCAGTTGCAGGTTATATTTATTAAGTTATTAAAA-TAACCTTTGTAGTCCACCCT
gi|22 : ---AAA------------------T--GTCA----CCAGT-AAGTGACAAAT-----------GGCCTGTGATTGTAAAGAT-T----GT-----A-----AAACGTGCTTT-GT-----GACTATATTTGGAA--TTTCTAAAGAAAAATGTAACCTTGA-CATA
gi|25 : ataaccagAGAACATTAAACAGGATACAATTTACACTTTCTGTATATACATGTATATAT
gi|26 : AATAAAAGCATTAAACAGTATACGAATAACA-TTTTTTTACATATATGg
gi|27 : tAAG---AAA------------------T--GTCA----CTAGT-AAGTGACAAATGTCCCAGGTGTGATCTGTG
gi|3 : TTTGGTTCAAAACTT-TTCAAA-AAAAGATCTGTTTAAATATTGAAAAATGTTT--TAATTGTAC-A----ACTAGAATT---TTTTTTTTATCATAA-------TTATACT--TTT---CCAGTTTTAGGTTATATTCATTTAGTTACTGAAA-GAACCTTTATTATCCACCCTGTACAACCGGTTATGAGAGACAATCAATGTGGTACCAC---CATGTACAATCATTCATGTGAAATAT----A-----TGGACTA-----TA------G--------TAAG--G-G---AAC-----------TCGA--CATCTAATTCATGGATTTCTGAT---GATGCGACTCATGGTGAGAAATATTCTTTATTGCTTGTAAAAGTTTTGAATGTAAAGCATCAGATAGAAGCAGCAGCTATGTCATATGCAATAGATTACT-AATAAATTTTGTTTTGGGTGGGATCCTCCATGACTGATTGATTCTAAG
gi|3 : TGATGATATG-T--AGAGTTGATAGTGAAAC---AGAAAG---------------T--GTTG----CTAAT-AGGTGATAAATGCCCCAGAAGCAGTCTGTGAATGAAAATACAT----GT-----ATGTATA--------TT-CT-----GACTGTTTTCAGGG--TTAATAA--ATAAACTTGACTTTGA-CCTAT-GA---ACAGATCTTT-GTGTAACAGGT-CATG-TTTGATG---ATTATTTATA--TGGTTATCTAGGAATCTTGCAATGAATGAAAACATTAAACAGGATATGAATAACACTTCCTGCATATACATGTATATATattacttgtgtctcaccactgaggcctggtnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnagagtatcagaatttactgatgatatgtagagttgatagtgaaacagaaagtgttgctaataggtgataaatgccccagaagcagtctgtgaatgaaaatacatgtatgtatattctgactgttttcagggttaataaataaacttgactttgacctatgaacagatctttgtgtaacaggtcatgtttgatgattatttatatggttatctaggaatcttgcaatgaatgaaaacattaaacaggatatgaataacacttcctgcatatacatgtatatatgta
gi|4 : tttggttcaaaacttttcaaaaaaagatctgtttaaatattgaaaaatgttttaattgtacaactagaattttttttttatcataattatacttttccagttttaggttatattcatttagttactgaaagaacctttattatccaccctgtacaaccggttatgagagacaatcaatgtggtaccaccatgtacaatcattcatgtgaaatatatggactatagtaagggaactcgacatctaattcatggatttctgatgatgcgactcatggtgagaaatattctttattgcttgtaaaagttttgaatgtaaagcatcagatagaagcagcagctatgtcatatgcaatagattactaataaattttgttttgggtgggatcctccatgactgattgattctaagattacttgtgtctcaccactgaggcctggtnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnagagtatcagaatttacTA----AA---AATG---TATT----ATCGTAA-------TTATGCT--TTT---CCAG------ATTATTTTTAGTTAGTTGTTGAAA-GAACTTTTGTAATCCACCCTGTACAACCAGTAATGAGAGACAATCAGTGTGTCACCAC---CATGTACAATCATTCATGTGAGATAT----A-----C-----A-----TGGACTTAT--------TCAAAGG-G---AAC-----------TAGA--CATGTGATTCATAGATTTGTTAC---GATGCAACTCATGGTAAGAAATATTCTTTATTGCTTGTAAAAGTTTTGACTGTAAGACATCAGATAGAAGCAGCAGCTATGTCATATGCAACAGATTACT-AATAAAGTCTATTTTCTGTGGAATTCTCCATGACCAATTGATCTTAAGgta
gi|4 : ctaacagtctactagaaatACTT-GGGCACCTGTTTGATCATATG---GAGAGTTGATAATAAAAC---AAAA-----------------TAGGTCA----CTCGT-AAGTGATAAATACCCTGGAAGCTGTCTGTAGATGAAAATA--T----GT-----A-----T--------TTTGT-----AA--ATTGTTACTA--TTATTAA--AAACACATGACCTTGA-GCTACAGACCTG--GATCTTG-GTGCAACACGT-TGTGATGTGATG---ATTATTTGTG--TAGTTATATCAAAACCCCTTAATGAATAAAAACATTAGACATGTTATGAATACCACTTTCatcagatgtctctaaccacttaggtnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntgaattacttgggcacctgtttgatcatatggagagttgataataaaacaaaataggtcactcgtaagtgataaataccctggaagctgtctgtagatgaaaatatgtattttgtaaattgttactattattaaaaacacatgaccttgagctacagacctggatcttggtgcaacacgttgtgatgtgatgattatttgtgtagttatatcaaaaccccttaatgaataaaaacattagacatgttatgaataccactttc
gi|5 : ctaacagtctactagaaattaaaaatgtattatcgtaattatgcttttccagattatttttagttagttgttgaaagaacttttgtaatccaccctgtacaaccagtaatgagagacaatcagtgtgtcaccaccatgtacaatcattcatgtgagatatacatggacttattcaaagggaactagacatgtgattcatagatttgttacgatgcaactcatggtaagaaatattctttattgcttgtaaaagttttgactgtaagacatcagatagaagcagcagctatgtcatatgcaacagattactaataaagtctattttctgtggaattctccatgaccaattgatcttaagatcagatgtctctaaccacttaggtnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntgaattGTTTCAGATTATACTTATTTAGTTATTGAAA-GAAACTTTGTAATCAACCCTGTACAACCGGTAATGAGAAACAGTTGATGTGGTACCACATCTGTCTGCAATCATTCATGTGAGATAT----G-----T-----AGACTATA------C--------TAAG--G-G---AAC-----------TCAA--TATGTGATTCACGGATTTCTGAT---GATGTGACTAATGGTTAGGAATATTCTGTATTGTTTGTAAAAGTTTTGACTGTTACACATCAGATAGAAGCAGCAGCTATGCCATATGCAACAGATTACC-AATAAATTCTATTTTGGGAGGGATTCTCCATGTCCGATCAATCCT
gi|5 : ACTTCGGGCATCTGTTTGAT---------GAATGTTGATTATAAAAC---AAACTAAAAATGTCACCAAAAT--GTCA----CTTAT-AAGTGATAAATGCCTCATAAGCAGTCTGTGAATGAAAATACATATATGT-----A-----A--------CT-ATATTTCGACTAATTTT-GGG--TTAATAA--AAAAACTTGACCTTTA-CCTTT-GAGTTACAGATCTTA-GTGCAACATAT-CATGATGTGATG---ATTATTTGTG--TAGTTATTT--------CGCAATGAATCAAAACATAAAATTGAATACtcaaatttcttgtctctcaccgctgaggttgggtnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnttacttcgggcatctgtttgatgaatgttgattataaaacaaactaaaaatgtcaccaaaatgtcacttataagtgataaatgcctcataagcagtctgtgaatgaaaatacatatatgtaactatatttcgactaattttgggttaataaaaaaacttgacctttacctttgagttacagatcttagtgcaacatatcatgatgtgatgattatttgtgtagttatttcgcaatgaatcaaaacataaaattgaatacctata
gi|6 : gtttcagattatacttatttagttattgaaagaaactttgtaatcaaccctgtacaaccggtaatgagaaacagttgatgtggtaccacatctgtctgcaatcattcatgtgagatatgtagactatactaagggaactcaatatgtgattcacggatttctgatgatgtgactaatggttaggaatattctgtattgtttgtaaaagttttgactgttacacatcagatagaagcagcagctatgccatatgcaacagattaccaataaattctattttgggagggattctccatgtccgatcaatccttcaaatttcttgtctctcaccgctgaggttgggtnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnttCTA----AA---AATG---TATT----ATCATAA-------TTATGCT--TTT---CCA-TTTCGGATTATATTTAGTTAGTTATTGAAA-GAACCTTTGTAATCCACCCTATACAACAAGTAATGAGAGACAATCAATGTGTCACCAC---CATGTACAATCATTCATTTGAGATAT----A-----T-----A-----TG------TACTTATTGTAAG--G-G---AAC-----------TAGA--CATGTGATTCATAGATTTCTTAT---GATGTGACTCGTGGTAAGGAATATTCTTTATTGCTTGTAAAAGTTTTGACTGTAAGATATCAGATAGAAGCAGCAGCTATGTCATATACAACAGATTAGC-AATAAGTTGTATTTTGTGTGGAATTCTCTATGACGAACTGATCTTAAGctata
gi|6 : actagaa-GGGCACCTGTTTGATTATATGA---AGAGTTGATAATTAAACA--AAA------------------TGGGTCA----CTCGT-AAGTGGTatcacttaggtnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnagtaccccactctgaatttacaagggcacctgtttgattatatgaagagttgataattaaacaaaatgggtcactcgtaagtggt
gi|7 : actagaactaaaaatgtattatcataattatgcttttccatttcggattatatttagttagttattgaaagaacctttgtaatccaccctatacaacaagtaatgagagacaatcaatgtgtcaccaccatgtacaatcattcatttgagatatatatgtacttattgtaagggaactagacatgtgattcatagatttcttatgatgtgactcgtggtaaggaatattctttattgcttgtaaaagttttgactgtaagatatcagatagaagcagcagctatgtcatatacaacagattagcaataagttgtattttgtgtggaattctctatgacgaactgatcttaagatcacttaggtnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnagtaccccactctgaatttacaa---AAT----TGTT----GTTATAAAATTTTTTTATTTT--TTT---TCAGTATCAGATTATATTCATTTAGTTATTGAAAAGAACCTTTGTAATCCACCCTGTACAACTGGTAATGAGAGACAATCAATGTGGTACCAT---CGTGTACAATCATTCATGTGAGATAT----AGGGACT-----T-----TA------C--------T-----A-AGATAAC-----------TCAA--CACCTGGTTCATGGAATTCTGAT---GATGCGACTCATGGTGAGGAAAATTCTTTATTGCTTGTAAAAGTTTTGACTGTAAGACATCAGATAGAAGCAGCAGGTATGTCATATGCAATAGATTACTAAACAAA-TCTGTTTTGGGTGGGATCCTCCATGATCGATT
gi|8 : ttacgcttagtttattgttgttgtttttaggagtttgcttaaaggtgaagttttattttatcaaattcctgcagttttaaattattttaaagaaaataatgtgaccttgcttgacttttatatgatttgcgcattgttgcaatttacaaaaacataatttcaaCATTCATGTGAGATAT----A-----T-----A-----TGGACTT-T--------TCTAAGG-G---AAC-----------TTGA--CATCTAATTCATGAATTTCTGAT---GAT--------TAGAAAGGAATATTCTTTATTGC
gi|8 : GCAGCTTTATCCTATACAATAGATTACT-AGTAAATTCTATTATGAGCGGGGTCCTCCATGACCAATTGATCCTAAGagctttatcctatacaatagattactagtaaattctattatgagcggggtcctccatgaccaattgatcctaagattacttttctctcaccgctgagctcggatggacaattattctgctccaccaataaagcagggtgcagtataacatattatgcgtaacagtgttaaaccacacttaaactttaattaggcacttgtttgattatatgtggagttgataataaaactaaaaatgtcactaataagtgataaatgcccccgaagcaatctgtgtatgaaaatacatgcatgtatattgtggctattttgagggtttataataaatgccccggaagcaatctgtgtatgaaaatacatgtatgtaaattgtgactattttgaaggtta
gi|8 : cattcatgtgagatatatatggacttttctaagggaacttgacatctaattcatgaatttctgatgattagaaaggaatattctttattTT-AGGCACTTGTTTGATTATATG-TG--GAGTTGATAATAAAACTAAAAA------------------T--GTCA----CTAAT-AAGTGATAAATGCCCCCGAAGCAATCTGTGTATGAAAATACAT----GC-----ATGTATA--------TT-GT-----GGCTATTTTGAGGG--TTTATAA--TAAAattacttttctctcaccgctgagctcggatggacaattattctgctccaccaataaagcagggtgcagtataacatattatgcgtaacagtgttaaaccacacttaaactttaattaggcacttgtttgattatatgtggagttgataataaaactaaaaatgtcactaataagtgataaatgcccccgaagcaatctgtgtatgaaaatacatgcatgtatattgtggctattttgagggtttataataaatgccccggaagcaatctgtgtatgaaaatacatgtatgtaaattgtgactattttgaaggtta
gi|8 : cattcatgtgagatatatatggacttttctaagggaacttgacatctaattcatgaatttctgatgattagaaaggaatattctttattgcagctttatcctatacaatagattactagtaaattctattatgagcggggtcctccatgaccaattgatcctaagattacttttctctcaccgctgagctcggatggacaattattctgctccaccaataaagcagggtgcagtataacatattatgcgtaacagtgttaaaccacacttaaactttaaTAATAAATGCCCCGGAAGCAATCTGTGTATGAAAATACAT----GTATGTAA-----A--------TT-GT-----GACTATTTTGAAGG--TTAtgccccggaagcaatctgtgtatgaaaatacatgtatgtaaattgtgactattttgaaggtta
gi|9 : cattcatgtgagatatatatggacttttctaagggaacttgacatctaattcatgaatttctgatgattagaaaggaatattctttattgcagctttatcctatacaatagattactagtaaattctattatgagcggggtcctccatgaccaattgatcctaagattacttttctctcaccgctgagctcggatggacaattattctgctccaccaataaagcagggtgcagtataacatattatgcgtaacagtgttaaaccacacttaaactttaattaggcacttgtttgattatatgtggagttgataataaaactaaaaatgtcactaataagtgataaatgcccccgaagcaatctgtgtatgaaaatacatgcatgtatattgtggctattttgagggtttaACATAATT-CAAAATTGTTA---AAAAAAAA----ACAAAAAAAGCTTTATTTTGGTTCAGAAATT-TTCAAAGAAAATATGTACTTTAATATTGAAGAATGTTT--CAGTTGTGCTA----AC---AATC---TACT----A--GAAA-------TTAA------TT---TAAAATAGAGATAATACTTATTTAGTTATTGAAA-GAACCTTTGTAATCCACCCTGTACAACTGGTAATGAGAAACAATTGATGTGGTACCAC---CATCTGCAATCATTCATGTGAGATAT----GTAGACT-----A-----TA------C--------TAAG--G-G---AAC-----------TCAA--TATGTGATTCAAGGAT
6 sequences could not be aligned to this reference sequence:
Unaligned ( gi|17 ): CAGTGTATTGTTGTTTTATTTGATCAAATTGCTGCATCTGAAAGCTCCATTATTAAGGAAAATCATGTGACCTTGCTTGACATTTATATGATATGCTCACTGTTGCACAAAAACAGTATTTTAAAATTGTTGTTATAAAAATATTTTTAAAGCCTTAGTT
Unaligned ( gi|18 ): TACACTCCAGTGTATTCTTGTTGTTTTAAGATGATTTTGCTTTAAGATAATGTTTTATTAAATTGTTGCATCTTTAAAATCTGTAATGAAAGAAAATCATTTGGCCTTTTATGATATGTTCATTGTTGTTATTTTCAATAATCATAATTTTA
Unaligned ( gi|19 ): TGCATGTCAATGTATTGTTGTTGTTTTTAAGATGATTTTGCTTTAAGATCGTGTTTTATTAAATTGCTGCAATTTTATGAACCGTTTTGAAGGAAAGTCACATGACCTTTTATGATATGCTCATTGTTGCTATTTTCAAAACATAATTA
Unaligned ( gi|20 ): TACACTCCAGTGTATTCTTGTTGTTTTTACTTTAAGATAATGTTTTATTGAATTGTTGCATCTTTAAAATCTGTAATGAAGGAAAATCATTTGGTCTTTTACGATATGCTCATTGTTGCTAATTTCAAAAAACATAATTT
Unaligned ( gi|23 ): AAGTCATGTGACCTTGCTTCGCTTTTATATGATATGCTCATTATGTTGTTATTTTCAAAGACATA
Unaligned ( gi|24 ): TTGTTGTTTTGAGGAGTTTTCTTTAAGATCATGTTTGATTTTATCAAATTGCTGCAT
Alignments
lowQualScore : 1111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 1 111 11111 1111 1111111 11 6666666666666666666666666666666666666666666 33333333333 111 2222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222 3333 1111 444444444444444444444 55555555555555555555555555 11111 111 11
lowQualScore : 0 444 1 88888 1 88 1 1 77 2 0 0 77 9999 7777 1111 8888 4444444 6 00 777 0 0 3 1 1 5 1 666 9999999999999999999999999999999999999999999 11111111111 99 1 222 1 4 7777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777 6 3 2222 9999 222222222222222222222 8888 11 4 0 3 2 0 66666666666666666666666666 4 00000 55 66 5 1 5 5 33 5 5 3 000 77 00 3 3 0 1 4 3
lowQualScore : . ... . ..... . .. . . .. . . . .. .... .... .... .... ....... . .. ... . . . . . . . ... ........................................... ........... .. . ... . . ............................................................................................................................... . . .... .... ..................... .... .. . . . . . .......................... . ..... .. .. . . . . .. . . . ... .. .. . . . . . .
lowQualScore : 6 000 0 00000 0 66 4 0 77 5 7 4 99 4444 1111 8888 5555 4444444 4 66 888 9 8 3 2 3 5 8 444 0000000000000000000000000000000000000000000 77777777777 22 0 777 4 0 0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 7 6 4444 1111 555555555555555555555 5555 55 0 4 3 5 3 11111111111111111111111111 0 00000 55 11 0 0 7 9 99 7 7 1 000 99 11 3 3 1 0 0 0
consensus : AACATAATTTCAAAATTGTTA---TAAAAANA----TTTAAAAA-GCCTTATTTTGGTTCAAAAA-NTTTCAAAGAAAAGATCTGTTTTAATATTGAAGAATGTTT--TAGTTGTGCTA----AC---AATC---TATT----ATCATAA-------TTATGCT--TTT---TCAGTTTCAGATTATATTCATTTAGTTATTGAAA-GAACCTTTGTAATCCACCCTGTACAACCGGTAATGAGAGACAATCGATGTGGCACCAC---CATGTACAATCATTCATGTGAGATAT----A-----T-----A-----T--A-------CTAA------GGGAAC-----------TCGA--CATCTGATTCATGGATTTCTGAT---GATGCGACTCATGGTGAGGAATATTCTGTATTGCTTGTAAAAGTTTTGACTGTAAGACATCAGATAGAAGCAGCAGCTATGTCATATGCAACAGATTACT-AATAAATTCTGTTTTGGGTGGGATCCTCCATGACCGATTGATCCTAAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGACTT-GGGCACCTGTTTGATTATATGATGGAGAGTTGATAATAAAAC---AAA------------------T--GTCA----CTAGT-AAGTGATAAATGCCCCGGAAGCGGTCTGTGAATGAAAATACAT----GT-----A-----A--------TT-GT-----GACTATTTTTAGGG--TTAATAA--AAAAACTTGACCTTGA-CNTAT-GAGCTACAGATCTTG-GTGCAACATGT-CATGATGTGATG---ATTATTTGTG--TGGTTATTTCGAAACCCCGCAATGAATNAAAACATTAAACAGGATACGAATAACACTTTCTTTATATACATGTATGTAT
Reference ( family-146 ) : AACATAATTTCAAAATTGTTA---TAAAAANA----TTTAAAAA-GCCTTATTTTGGTTCAAAAA-NTTTCAAAGAAAAGATCTGTTTTAATATTGAAGAATGTTT--TAGTTGTGCTA----AC---AATC---TATT----ATCATAA-------TTATGCT--TTT---TCAGTTTCAGATTATATTCATTTAGTTATTGAAA-GAACCTTTGTAATCCACCCTGTACAACCGGTAATGAGAGACAATCGATGTGGCACCAC---CATGTACAATCATTCATGTGAGATAT----A-----T-----A-----T--A-------CTNA------GGGAAC-----------TCGA--CATCTGATTCATGGATTTCTGAT---GATGCGACTCATGGTGAGGAATATTCTGTATTGCTTGTAAAAGTTTTGACTGTAAGACATCAGATAGAAGCAGCAGCTATGTCATATGCAACAGATTACT-AATAAATTCTGTTTTGGGTGGGATCCTCCATGACCGATTGATCCTAAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGACTT-GGGCACCTGTTTGATTATATGATGGAGAGTTGATAATAAAAC---AAA------------------T--GTCA----CTAGT-AAGTGATAAATGCCCCGGAAGCGGTCTGTGAATGAAAATACAT----GT-----A-----A--------TT-GT-----GACTATTTTTAGGG--TTAATAA--AAAAACTTGACCTTGA-CNTAT-GAGCTACAGATCTTG-GTGCAACATGT-CATGATGTGATG---ATTATTTGTG--TGGTTATTTCGAAACCCCGCAATGAATNAAAACATTAAACAGGATACGAATAACACTTTCTTTATATACATGTATGTAT
gi|1 : AACATAATTTCAAAATTATTA---TGAAAATA----TTTAAAAC-GCATTATCTTGGTTAAAAAA-AT--CAAATAACAGATCTGTTTTAATATTAAAATATGTTT--TAGTTGTGCTA----AC---AATC---TATT----ATCATAA-------TTATACTA-TTT---TCAGTTTCAGATTATATTCATTAAGTTATTGAAA-GAACCTTTGTAATCCACCCTGTACAACCGGTAACGAGAGACAATCAATGTGGCACCAC---CATGTACAATCATTCTTGT-----AT----A-----T-----A-----T---------------------GGAAC-----------TCGA--CATCTGATTCGTGGACTTCTGAT---GGTGCGACTCATGGTGATGAATATTCTGTATTGCTTGTAAAAGTTTTGACTGTAAGACATCAGATAGAAGCAGCAGCTATGTCATATGCAATAGATAACT-AAACAATTCTGTTTTGGGTGGGATCTTCTATGACTGATTGAACCTGAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGACTT-GGGCACCTCGTTCATTATATAATGGAGAGTTGATGATAAAA----AAA------------------T--GTCA----CTAAT-AAGTGATAAATACCCAAGGAGCAGTGTGTAAATGAATAGACAT-----------------A--------TT-GC-----GACTATCTTTAGAG--TAAATAA--AACAACTTGACCTTGA-CGTAT-GAGCTACAGGTCTTG-GTGCAACATGT-CATGAAGTGATG---ATTATTTGTG--TGGTTATTTCAAATCCCCACACTGAATTAAAACATTAAACAGGATACAAATAACATTTTCTTTATATTCATGTGTGTAT
gi|10 : TA----AA---AAAT---TATT----AGCATAA-------TTATCCT--TTTTTTTCAGTTTCAGATTGTATTCATTTAGTTATCAAAA-GAACCTTTGTAATCCACCCTGTACAACTGGCAATGAGAGACAATCTATGTGGTACCAC---CATGTACAATCAGTCATGTGAGATAT----ATGGACT-----A-----T--T-------CTAA------GTGAAC-----------TTGA--CATCTTATTCATGGATTTCTGAC---GATGCAACTCATGGTGAGGAATATTCTGTATTGCTTGTTAAAGTTTTGACTGTAGCACATCATATAGAAGCAGCAGTTATATCATATGCAA
gi|11 : aatAACATAATTTCAAAACTGTTGCTCTAAATCTA----TTTAACAA-GCCTTATTTT-GTTAAAAAAGAATTCAAAGAAAATATCTATTTTAATATTGAAGAATGTTT--t
gi|12 : ttacacttcagtgtattgttgttgtttttaagattttgctttaagatcatgttttattttatcaactttccgcatcttcaaattcctttattaaggaaaatcatgtgaccttgcttgacttttatatggtatgctcattgctgctattttcaaaAAA-AAACCTTTGTAATCCACCCTGTACAACATGTAATAGGAGACA---------------C---CATGTACAATTGTTCATGCAAACTATTTTGAC----T-----A-----T--A-------CTTG------GGGAACTGTGCCACATTTTGATTCATTTGATTCATAGATTGCTGATTAAAATACATCACATGGTAAGGAATATTGTGTTCTGTTTGTAAAAGTTTTGACTGCAAGACATCAGATAGAAGCAGCAGTCATGTCATACGCAACCGAATAAC-AATACATTTTacg
gi|13 : AAA-GAACCTTTGTAATCCACCCTGTACAACATGTAATAGGAGACA---------------C---CATGTACAATTGTTCATGCAAACTATTTTGAC----T-----A-----T--A-------CTTA------GGGAACTGTGCCACATTTTGATTCATTTGATTCATAGATTGCTGATTAAAATACATCACATGGTAAGGAATATTGTGTTCTGTTTGTAAAAGTTTTGACTGCAGGACATCAGATAGAAGCAGCAGTCATGTCATACGCAACCGAATAAC-AATACATT
gi|14 : ACATAATT-CAAAATTGTTA---TAAAAACAAAAA---AAAAA-GTTTTATTTTGGTTCAGAAA-TTTTCAAAGAGAATATCTTCTTTAACATTGAAAAATGTTT--CAGTTGTGCTA----AC---AATC---TACT----A
gi|15 : ttacactttagtgtattgttgtttttaagatcatgttttattttatcgaattgttgcatctttaggaaaatcatgtgacctttcttgTAATAAATGCCCCGGAAGCAATCTGTGTATGAAAATACAT----GT-----ATGTAAA--------TT-GT-----GACTATTTTGAAGG--TTAANNN--NNNNNNNNNNNNNNNN-NNNNN-NNNNNNNNNNNNNNN-NNNNNNNNNNN-NNNNNNNNNNNN---NNNNNNNNNN--NNNNNNNNNNNNNNNNNNNNGATTGATAAAAGCATTAAACAGGATACAAATAATATTTT-----TGTACATGTATGTATgaaattaaaaactatataattatgtt
gi|16 : TAACACAAG---AAA------------------T--GTCAAAGGTTATTTAAGTAATAAATACCCTAAAAGTGGTCTGTCATTGTAA--AGGT----GT-----A-----CT-------TT-AT-----GATTATATTTTGGATTTTAACAA--AAAAGTT--ACCTTGATCTTCT-TACCTGT--ATCTTGCATATAATCTGTCCATCTTGTGATGTTTATCATTTGTGACAAATCATTTTTAAACCCCTC-ATGAACAA
gi|2 : gtgaacAACATAATTTCAAAATTATTA---TGAAAAGA----TTTAAAAC-GCCTTATTTTGATTTAAAGA-AATTCAAAGAAAAGATCTGTTATAATATTAAAGAATGTTT--TAATTGTGCTA----AC---AATC---TATT----ATCATAA-------TTATACT--TT-----------CAGATTATATTCATTTAGTTATTGAAA-GAACCTTTGTAATCCACCCTGTACATCCGTTAACGAGAGACAATCAATGTGGCACCAC---CATGTACAATCATTCTAGTGAGATAT----A-----T---------------------------------GGAAC-----------TCGA--CATCTGATTCGTGGCTTTCTGAT---GGTGCGACTCATGGTGAGGAATATTCTGTATTGCTTTTAAA-GTTTTGATTGTAAGACATCAGATAAAAGCAGCAGCTATGTCATATGCAATATATAACT-AAACAATTCTGTTTTGGGTGGGATCTTCCATGACCGACTGATCCTAAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTT-GGGCACCTAGTTAATTTTATAATGGAGAGTTGATGATAAAACAAAAAA------------------T--GTCA----CTTAT-AATTGTTAAATACCTAAGAAGCAGTGTGTAAATGAAAATACAT-----------------A--------TT-GC-----GACTA-TTTTAGAG--TTAATAA--AACACCTTGACATTGA-CGTAT-GAGTTACAGATCTTG-GTGAAACATGT-CATGAAGTGATG---ATTATTTGTG--TGGTTATTTCAAATCTCCACACCGAATTAAAACATTAAACAGGATACAAATAACATGTTCTTTATctaagttag
gi|21 : AAGATCTATTTTAATATTGAAGAAAGTTTAATAATC-TACTAGAAAAT---AATTATTTGTT----ATCATAA-------TTATGATATTTT---TCAGTTGCAGGTTATATTTATTAAGTTATTAAAA-TAACCTTTGTAGTCCACCCT
gi|22 : ---AAA------------------T--GTCA----CCAGT-AAGTGACAAAT-----------GGCCTGTGATTGTAAAGAT-T----GT-----A-----AAACGTGCTTT-GT-----GACTATATTTGGAA--TTTCTAAAGAAAAATGTAACCTTGA-CATA
gi|25 : ataaccagAGAACATTAAACAGGATACAATTTACACTTTCTGTATATACATGTATATAT
gi|26 : AATAAAAGCATTAAACAGTATACGAATAACA-TTTTTTTACATATATGg
gi|27 : tAAG---AAA------------------T--GTCA----CTAGT-AAGTGACAAATGTCCCAGGTGTGATCTGTG
gi|3 : TTTGGTTCAAAAC-TTTTCAAA-AAAAGATCTGTTTAAATATTGAAAAATGTTT--TAATTGTAC-A----ACTAGAATT---TTTTTTTTATCATAA-------TTATACT--TTT---CCAGTTTTAGGTTATATTCATTTAGTTACTGAAA-GAACCTTTATTATCCACCCTGTACAACCGGTTATGAGAGACAATCAATGTGGTACCAC---CATGTACAATCATTCATGTGAAATAT----A-----TGGACTA-----T--A-------GTAA------GGGAAC-----------TCGA--CATCTAATTCATGGATTTCTGAT---GATGCGACTCATGGTGAGAAATATTCTTTATTGCTTGTAAAAGTTTTGAATGTAAAGCATCAGATAGAAGCAGCAGCTATGTCATATGCAATAGATTACT-AATAAATTTTGTTTTGGGTGGGATCCTCCATGACTGATTGATTCTAAG
gi|3 : TGATGATATG-T--AGAGTTGATAGTGAAAC---AGAAAG---------------T--GTTG----CTAAT-AGGTGATAAATGCCCCAGAAGCAGTCTGTGAATGAAAATACAT----GT-----ATGTATA--------TT-CT-----GACTGTTTTCAGGG--TTAATAA--ATAAACTTGACTTTGA-CCTAT-GA---ACAGATCTTT-GTGTAACAGGT-CATG-TTTGATG---ATTATTTATA--TGGTTATCTAGGAATCTTGCAATGAATGAAAACATTAAACAGGATATGAATAACACTTCCTGCATATACATGTATATATattacttgtgtctcaccactgaggcctggtnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnagagtatcagaatttactgatgatatgtagagttgatagtgaaacagaaagtgttgctaataggtgataaatgccccagaagcagtctgtgaatgaaaatacatgtatgtatattctgactgttttcagggttaataaataaacttgactttgacctatgaacagatctttgtgtaacaggtcatgtttgatgattatttatatggttatctaggaatcttgcaatgaatgaaaacattaaacaggatatgaataacacttcctgcatatacatgtatatatgta
gi|4 : tttggttcaaaacttttcaaaaaaagatctgtttaaatattgaaaaatgttttaattgtacaactagaattttttttttatcataattatacttttccagttttaggttatattcatttagttactgaaagaacctttattatccaccctgtacaaccggttatgagagacaatcaatgtggtaccaccatgtacaatcattcatgtgaaatatatggactatagtaagggaactcgacatctaattcatggatttctgatgatgcgactcatggtgagaaatattctttattgcttgtaaaagttttgaatgtaaagcatcagatagaagcagcagctatgtcatatgcaatagattactaataaattttgttttgggtgggatcctccatgactgattgattctaagattacttgtgtctcaccactgaggcctggtnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnagagtatcagaatttacTA----AA---AATG---TATT----ATCGTAA-------TTATGCT--TTT---CCAG------ATTATTTTTAGTTAGTTGTTGAAA-GAACTTTTGTAATCCACCCTGTACAACCAGTAATGAGAGACAATCAGTGTGTCACCAC---CATGTACAATCATTCATGTGAGATAT----A-----C-----A-----TGGA-------CTTATTCAAAGGGAAC-----------TAGA--CATGTGATTCATAGATTTGTTAC---GATGCAACTCATGGTAAGAAATATTCTTTATTGCTTGTAAAAGTTTTGACTGTAAGACATCAGATAGAAGCAGCAGCTATGTCATATGCAACAGATTACT-AATAAAGTCTATTTTCTGTGGAATTCTCCATGACCAATTGATCTTAAGgta
gi|4 : ctaacagtctactagaaatACTT-GGGCACCTGTTTGATCATATG---GAGAGTTGATAATAAAAC---AAAA-----------------TAGGTCA----CTCGT-AAGTGATAAATACCCTGGAAGCTGTCTGTAGATGAAAATA--T----GT-----A-----T--------TTTGT-----AA--ATTGTTACTA--TTATTAA--AAACACATGACCTTGA-GCTACAGACCTG--GATCTTG-GTGCAACACGT-TGTGATGTGATG---ATTATTTGTG--TAGTTATATCAAAACCCCTTAATGAATAAAAACATTAGACATGTTATGAATACCACTTTCatcagatgtctctaaccacttaggtnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntgaattacttgggcacctgtttgatcatatggagagttgataataaaacaaaataggtcactcgtaagtgataaataccctggaagctgtctgtagatgaaaatatgtattttgtaaattgttactattattaaaaacacatgaccttgagctacagacctggatcttggtgcaacacgttgtgatgtgatgattatttgtgtagttatatcaaaaccccttaatgaataaaaacattagacatgttatgaataccactttc
gi|5 : ctaacagtctactagaaattaaaaatgtattatcgtaattatgcttttccagattatttttagttagttgttgaaagaacttttgtaatccaccctgtacaaccagtaatgagagacaatcagtgtgtcaccaccatgtacaatcattcatgtgagatatacatggacttattcaaagggaactagacatgtgattcatagatttgttacgatgcaactcatggtaagaaatattctttattgcttgtaaaagttttgactgtaagacatcagatagaagcagcagctatgtcatatgcaacagattactaataaagtctattttctgtggaattctccatgaccaattgatcttaagatcagatgtctctaaccacttaggtnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntgaattGTTTCAGATTATACTTATTTAGTTATTGAAA-GAAACTTTGTAATCAACCCTGTACAACCGGTAATGAGAAACAGTTGATGTGGTACCACATCTGTCTGCAATCATTCATGTGAGATAT----G-----T-----AGACTAT--A-------CTAA------GGGAAC-----------TCAA--TATGTGATTCACGGATTTCTGAT---GATGTGACTAATGGTTAGGAATATTCTGTATTGTTTGTAAAAGTTTTGACTGTTACACATCAGATAGAAGCAGCAGCTATGCCATATGCAACAGATTACC-AATAAATTCTATTTTGGGAGGGATTCTCCATGTCCGATCAATCCT
gi|5 : ACTTCGGGCATCTGTTTGAT---------GAATGTTGATTATAAAAC---AAACTAAAAATGTCACCAAAAT--GTCA----CTTAT-AAGTGATAAATGCCTCATAAGCAGTCTGTGAATGAAAATACATATATGT-----A-----A--------CT-ATATTTCGACTAATTTT-GGG--TTAATAA--AAAAACTTGACCTTTA-CCTTT-GAGTTACAGATCTTA-GTGCAACATAT-CATGATGTGATG---ATTATTTGTG--TAGTTATTT--------CGCAATGAATCAAAACATAAAATTGAATACtcaaatttcttgtctctcaccgctgaggttgggtnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnttacttcgggcatctgtttgatgaatgttgattataaaacaaactaaaaatgtcaccaaaatgtcacttataagtgataaatgcctcataagcagtctgtgaatgaaaatacatatatgtaactatatttcgactaattttgggttaataaaaaaacttgacctttacctttgagttacagatcttagtgcaacatatcatgatgtgatgattatttgtgtagttatttcgcaatgaatcaaaacataaaattgaatacctata
gi|6 : gtttcagattatacttatttagttattgaaagaaactttgtaatcaaccctgtacaaccggtaatgagaaacagttgatgtggtaccacatctgtctgcaatcattcatgtgagatatgtagactatactaagggaactcaatatgtgattcacggatttctgatgatgtgactaatggttaggaatattctgtattgtttgtaaaagttttgactgttacacatcagatagaagcagcagctatgccatatgcaacagattaccaataaattctattttgggagggattctccatgtccgatcaatccttcaaatttcttgtctctcaccgctgaggttgggtnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnttCTA----AA---AATG---TATT----ATCATAA-------TTATGCT--TTT---CCA-TTTCGGATTATATTTAGTTAGTTATTGAAA-GAACCTTTGTAATCCACCCTATACAACAAGTAATGAGAGACAATCAATGTGTCACCAC---CATGTACAATCATTCATTTGAGATAT----A-----T-----A-----TGTA-------CTTATTGTAAGGGAAC-----------TAGA--CATGTGATTCATAGATTTCTTAT---GATGTGACTCGTGGTAAGGAATATTCTTTATTGCTTGTAAAAGTTTTGACTGTAAGATATCAGATAGAAGCAGCAGCTATGTCATATACAACAGATTAGC-AATAAGTTGTATTTTGTGTGGAATTCTCTATGACGAACTGATCTTAAGctata
gi|6 : actagaa-GGGCACCTGTTTGATTATATGA---AGAGTTGATAATTAAACA--AAA------------------TGGGTCA----CTCGT-AAGTGGTatcacttaggtnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnagtaccccactctgaatttacaagggcacctgtttgattatatgaagagttgataattaaacaaaatgggtcactcgtaagtggt
gi|7 : actagaactaaaaatgtattatcataattatgcttttccatttcggattatatttagttagttattgaaagaacctttgtaatccaccctatacaacaagtaatgagagacaatcaatgtgtcaccaccatgtacaatcattcatttgagatatatatgtacttattgtaagggaactagacatgtgattcatagatttcttatgatgtgactcgtggtaaggaatattctttattgcttgtaaaagttttgactgtaagatatcagatagaagcagcagctatgtcatatacaacagattagcaataagttgtattttgtgtggaattctctatgacgaactgatcttaagatcacttaggtnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnagtaccccactctgaatttacaa---AAT----TGTT----GTTATAAAATTTTTTTATTTT--TTT---TCAGTATCAGATTATATTCATTTAGTTATTGAAAAGAACCTTTGTAATCCACCCTGTACAACTGGTAATGAGAGACAATCAATGTGGTACCAT---CGTGTACAATCATTCATGTGAGATAT----AGGGACT-----T-----T--A-------CTAA------GATAAC-----------TCAA--CACCTGGTTCATGGAATTCTGAT---GATGCGACTCATGGTGAGGAAAATTCTTTATTGCTTGTAAAAGTTTTGACTGTAAGACATCAGATAGAAGCAGCAGGTATGTCATATGCAATAGATTACTAAACAAA-TCTGTTTTGGGTGGGATCCTCCATGATCGATT
gi|8 : ttacgcttagtttattgttgttgtttttaggagtttgcttaaaggtgaagttttattttatcaaattcctgcagttttaaattattttaaagaaaataatgtgaccttgcttgacttttatatgatttgcgcattgttgcaatttacaaaaacataatttcaaCATTCATGTGAGATAT----A-----T-----A-----T--GGACTTTTCTAA------GGGAAC-----------TTGA--CATCTAATTCATGAATTTCTGAT---GAT--------TAGAAAGGAATATTCTTTATTGC
gi|8 : GCAGCTTTATCCTATACAATAGATTACT-AGTAAATTCTATTATGAGCGGGGTCCTCCATGACCAATTGATCCTAAGagctttatcctatacaatagattactagtaaattctattatgagcggggtcctccatgaccaattgatcctaagattacttttctctcaccgctgagctcggatggacaattattctgctccaccaataaagcagggtgcagtataacatattatgcgtaacagtgttaaaccacacttaaactttaattaggcacttgtttgattatatgtggagttgataataaaactaaaaatgtcactaataagtgataaatgcccccgaagcaatctgtgtatgaaaatacatgcatgtatattgtggctattttgagggtttataataaatgccccggaagcaatctgtgtatgaaaatacatgtatgtaaattgtgactattttgaaggtta
gi|8 : cattcatgtgagatatatatggacttttctaagggaacttgacatctaattcatgaatttctgatgattagaaaggaatattctttattTT-AGGCACTTGTTTGATTATATG-TG--GAGTTGATAATAAAACTAAAAA------------------T--GTCA----CTAAT-AAGTGATAAATGCCCCCGAAGCAATCTGTGTATGAAAATACAT----GC-----ATGTATA--------TT-GT-----GGCTATTTTGAGGG--TTTATAA--TAAAattacttttctctcaccgctgagctcggatggacaattattctgctccaccaataaagcagggtgcagtataacatattatgcgtaacagtgttaaaccacacttaaactttaattaggcacttgtttgattatatgtggagttgataataaaactaaaaatgtcactaataagtgataaatgcccccgaagcaatctgtgtatgaaaatacatgcatgtatattgtggctattttgagggtttataataaatgccccggaagcaatctgtgtatgaaaatacatgtatgtaaattgtgactattttgaaggtta
gi|8 : cattcatgtgagatatatatggacttttctaagggaacttgacatctaattcatgaatttctgatgattagaaaggaatattctttattgcagctttatcctatacaatagattactagtaaattctattatgagcggggtcctccatgaccaattgatcctaagattacttttctctcaccgctgagctcggatggacaattattctgctccaccaataaagcagggtgcagtataacatattatgcgtaacagtgttaaaccacacttaaactttaaTAATAAATGCCCCGGAAGCAATCTGTGTATGAAAATACAT----GTATGTAA-----A--------TT-GT-----GACTATTTTGAAGG--TTAtgccccggaagcaatctgtgtatgaaaatacatgtatgtaaattgtgactattttgaaggtta
gi|9 : cattcatgtgagatatatatggacttttctaagggaacttgacatctaattcatgaatttctgatgattagaaaggaatattctttattgcagctttatcctatacaatagattactagtaaattctattatgagcggggtcctccatgaccaattgatcctaagattacttttctctcaccgctgagctcggatggacaattattctgctccaccaataaagcagggtgcagtataacatattatgcgtaacagtgttaaaccacacttaaactttaattaggcacttgtttgattatatgtggagttgataataaaactaaaaatgtcactaataagtgataaatgcccccgaagcaatctgtgtatgaaaatacatgcatgtatattgtggctattttgagggtttaACATAATT-CAAAATTGTTA---AAAAAAAA----ACAAAAAAAGCTTTATTTTGGTTCAGAAA-TTTTCAAAGAAAATATGTACTTTAATATTGAAGAATGTTT--CAGTTGTGCTA----AC---AATC---TACT----A--GAAA-------TTAA------TT---TAAAATAGAGATAATACTTATTTAGTTATTGAAA-GAACCTTTGTAATCCACCCTGTACAACTGGTAATGAGAAACAATTGATGTGGTACCAC---CATCTGCAATCATTCATGTGAGATAT----GTAGACT-----A-----T--A-------CTAA------GGGAAC-----------TCAA--TATGTGATTCAAGGAT
6 sequences could not be aligned to this reference sequence:
Unaligned ( gi|17 ): CAGTGTATTGTTGTTTTATTTGATCAAATTGCTGCATCTGAAAGCTCCATTATTAAGGAAAATCATGTGACCTTGCTTGACATTTATATGATATGCTCACTGTTGCACAAAAACAGTATTTTAAAATTGTTGTTATAAAAATATTTTTAAAGCCTTAGTT
Unaligned ( gi|18 ): TACACTCCAGTGTATTCTTGTTGTTTTAAGATGATTTTGCTTTAAGATAATGTTTTATTAAATTGTTGCATCTTTAAAATCTGTAATGAAAGAAAATCATTTGGCCTTTTATGATATGTTCATTGTTGTTATTTTCAATAATCATAATTTTA
Unaligned ( gi|19 ): TGCATGTCAATGTATTGTTGTTGTTTTTAAGATGATTTTGCTTTAAGATCGTGTTTTATTAAATTGCTGCAATTTTATGAACCGTTTTGAAGGAAAGTCACATGACCTTTTATGATATGCTCATTGTTGCTATTTTCAAAACATAATTA
Unaligned ( gi|20 ): TACACTCCAGTGTATTCTTGTTGTTTTTACTTTAAGATAATGTTTTATTGAATTGTTGCATCTTTAAAATCTGTAATGAAGGAAAATCATTTGGTCTTTTACGATATGCTCATTGTTGCTAATTTCAAAAAACATAATTT
Unaligned ( gi|23 ): AAGTCATGTGACCTTGCTTCGCTTTTATATGATATGCTCATTATGTTGTTATTTTCAAAGACATA
Unaligned ( gi|24 ): TTGTTGTTTTGAGGAGTTTTCTTTAAGATCATGTTTGATTTTATCAAATTGCTGCAT
Alignments
lowQualScore : 1111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 1 111 11111 1111 1111111 11 66666666666666666666666666666666666666666 33333333333 111 2222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222 3333 1111 444444444444444444444 55555555555555555555555555 11111 111 11
lowQualScore : 0 444 1 88888 1 88 1 1 77 2 0 0 77 9999 7777 1111 8888 4444444 6 00 777 0 0 3 1 1 5 1 666 99999999999999999999999999999999999999999 11111111111 99 1 222 1 4 7777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777 6 3 2222 9999 222222222222222222222 8888 11 4 0 3 2 0 66666666666666666666666666 4 00000 55 66 5 1 5 5 33 5 5 3 000 77 00 3 3 0 1 4 3
lowQualScore : . ... . ..... . .. . . .. . . . .. .... .... .... .... ....... . .. ... . . . . . . . ... ......................................... ........... .. . ... . . ............................................................................................................................... . . .... .... ..................... .... .. . . . . . .......................... . ..... .. .. . . . . .. . . . ... .. .. . . . . . .
lowQualScore : 6 000 0 00000 0 66 4 0 77 5 7 4 99 4444 1111 8888 5555 4444444 4 66 888 9 8 3 2 3 5 8 444 44444444444444444444444444444444444444444 77777777777 22 0 777 4 0 0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 7 6 4444 1111 555555555555555555555 5555 55 0 4 3 5 3 11111111111111111111111111 0 00000 55 11 0 0 7 9 99 7 7 1 000 99 11 3 3 1 0 0 0
consensus : AACATAATTTCAAAATTGTTA---TAAAAANA----TTTAAAAA-GCCTTATTTTGGTTCAAAAA-NTTTCAAAGAAAAGATCTGTTTTAATATTGAAGAATGTTT--TAGTTGTGCTA----AC---AATC---TATT----ATCATAA-------TTATGCT--TTT---TCAGTTTCAGATTATATTCATTTAGTTATTGAAA-GAACCTTTGTAATCCACCCTGTACAACCGGTAATGAGAGACAATCGATGTGGCACCAC---CATGTACAATCATTCATGTGAGATAT----A-----T-----A-----T--A-------CT------AAGGGAAC-----------TCGA--CATCTGATTCATGGATTTCTGAT---GATGCGACTCATGGTGAGGAATATTCTGTATTGCTTGTAAAAGTTTTGACTGTAAGACATCAGATAGAAGCAGCAGCTATGTCATATGCAACAGATTACT-AATAAATTCTGTTTTGGGTGGGATCCTCCATGACCGATTGATCCTAAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGACTT-GGGCACCTGTTTGATTATATGATGGAGAGTTGATAATAAAAC---AAA------------------T--GTCA----CTAGT-AAGTGATAAATGCCCCGGAAGCGGTCTGTGAATGAAAATACAT----GT-----A-----A--------TT-GT-----GACTATTTTTAGGG--TTAATAA--AAAAACTTGACCTTGA-CNTAT-GAGCTACAGATCTTG-GTGCAACATGT-CATGATGTGATG---ATTATTTGTG--TGGTTATTTCGAAACCCCGCAATGAATNAAAACATTAAACAGGATACGAATAACACTTTCTTTATATACATGTATGTAT
Reference ( family-146 ) : AACATAATTTCAAAATTGTTA---TAAAAANA----TTTAAAAA-GCCTTATTTTGGTTCAAAAA-NTTTCAAAGAAAAGATCTGTTTTAATATTGAAGAATGTTT--TAGTTGTGCTA----AC---AATC---TATT----ATCATAA-------TTATGCT--TTT---TCAGTTTCAGATTATATTCATTTAGTTATTGAAA-GAACCTTTGTAATCCACCCTGTACAACCGGTAATGAGAGACAATCGATGTGGCACCAC---CATGTACAATCATTCATGTGAGATAT----A-----T-----A-----T--A-------CT------AAGGGAAC-----------TCGA--CATCTGATTCATGGATTTCTGAT---GATGCGACTCATGGTGAGGAATATTCTGTATTGCTTGTAAAAGTTTTGACTGTAAGACATCAGATAGAAGCAGCAGCTATGTCATATGCAACAGATTACT-AATAAATTCTGTTTTGGGTGGGATCCTCCATGACCGATTGATCCTAAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGACTT-GGGCACCTGTTTGATTATATGATGGAGAGTTGATAATAAAAC---AAA------------------T--GTCA----CTAGT-AAGTGATAAATGCCCCGGAAGCGGTCTGTGAATGAAAATACAT----GT-----A-----A--------TT-GT-----GACTATTTTTAGGG--TTAATAA--AAAAACTTGACCTTGA-CNTAT-GAGCTACAGATCTTG-GTGCAACATGT-CATGATGTGATG---ATTATTTGTG--TGGTTATTTCGAAACCCCGCAATGAATNAAAACATTAAACAGGATACGAATAACACTTTCTTTATATACATGTATGTAT
gi|1 : AACATAATTTCAAAATTATTA---TGAAAATA----TTTAAAAC-GCATTATCTTGGTTAAAAAA-AT--CAAATAACAGATCTGTTTTAATATTAAAATATGTTT--TAGTTGTGCTA----AC---AATC---TATT----ATCATAA-------TTATACTA-TTT---TCAGTTTCAGATTATATTCATTAAGTTATTGAAA-GAACCTTTGTAATCCACCCTGTACAACCGGTAACGAGAGACAATCAATGTGGCACCAC---CATGTACAATCATTCTTGT-----AT----A-----T-----A-----T---------------------GGAAC-----------TCGA--CATCTGATTCGTGGACTTCTGAT---GGTGCGACTCATGGTGATGAATATTCTGTATTGCTTGTAAAAGTTTTGACTGTAAGACATCAGATAGAAGCAGCAGCTATGTCATATGCAATAGATAACT-AAACAATTCTGTTTTGGGTGGGATCTTCTATGACTGATTGAACCTGAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGACTT-GGGCACCTCGTTCATTATATAATGGAGAGTTGATGATAAAA----AAA------------------T--GTCA----CTAAT-AAGTGATAAATACCCAAGGAGCAGTGTGTAAATGAATAGACAT-----------------A--------TT-GC-----GACTATCTTTAGAG--TAAATAA--AACAACTTGACCTTGA-CGTAT-GAGCTACAGGTCTTG-GTGCAACATGT-CATGAAGTGATG---ATTATTTGTG--TGGTTATTTCAAATCCCCACACTGAATTAAAACATTAAACAGGATACAAATAACATTTTCTTTATATTCATGTGTGTAT
gi|10 : TA----AA---AAAT---TATT----AGCATAA-------TTATCCT--TTTTTTTCAGTTTCAGATTGTATTCATTTAGTTATCAAAA-GAACCTTTGTAATCCACCCTGTACAACTGGCAATGAGAGACAATCTATGTGGTACCAC---CATGTACAATCAGTCATGTGAGATAT----ATGGACT-----A-----T--T-------CT------AAGTGAAC-----------TTGA--CATCTTATTCATGGATTTCTGAC---GATGCAACTCATGGTGAGGAATATTCTGTATTGCTTGTTAAAGTTTTGACTGTAGCACATCATATAGAAGCAGCAGTTATATCATATGCAA
gi|11 : aatAACATAATTTCAAAACTGTTGCTCTAAATCTA----TTTAACAA-GCCTTATTTT-GTTAAAAAAGAATTCAAAGAAAATATCTATTTTAATATTGAAGAATGTTT--t
gi|12 : ttacacttcagtgtattgttgttgtttttaagattttgctttaagatcatgttttattttatcaactttccgcatcttcaaattcctttattaaggaaaatcatgtgaccttgcttgacttttatatggtatgctcattgctgctattttcaaaAAA-AAACCTTTGTAATCCACCCTGTACAACATGTAATAGGAGACA---------------C---CATGTACAATTGTTCATGCAAACTATTTTGAC----T-----A-----T--A-------CT------TGGGGAACTGTGCCACATTTTGATTCATTTGATTCATAGATTGCTGATTAAAATACATCACATGGTAAGGAATATTGTGTTCTGTTTGTAAAAGTTTTGACTGCAAGACATCAGATAGAAGCAGCAGTCATGTCATACGCAACCGAATAAC-AATACATTTTacg
gi|13 : AAA-GAACCTTTGTAATCCACCCTGTACAACATGTAATAGGAGACA---------------C---CATGTACAATTGTTCATGCAAACTATTTTGAC----T-----A-----T--A-------CT------TAGGGAACTGTGCCACATTTTGATTCATTTGATTCATAGATTGCTGATTAAAATACATCACATGGTAAGGAATATTGTGTTCTGTTTGTAAAAGTTTTGACTGCAGGACATCAGATAGAAGCAGCAGTCATGTCATACGCAACCGAATAAC-AATACATT
gi|14 : ACATAATT-CAAAATTGTTA---TAAAAACAAAAA---AAAAA-GTTTTATTTTGGTTCAGAAA-TTTTCAAAGAGAATATCTTCTTTAACATTGAAAAATGTTT--CAGTTGTGCTA----AC---AATC---TACT----A
gi|15 : ttacactttagtgtattgttgtttttaagatcatgttttattttatcgaattgttgcatctttaggaaaatcatgtgacctttcttgTAATAAATGCCCCGGAAGCAATCTGTGTATGAAAATACAT----GT-----ATGTAAA--------TT-GT-----GACTATTTTGAAGG--TTAANNN--NNNNNNNNNNNNNNNN-NNNNN-NNNNNNNNNNNNNNN-NNNNNNNNNNN-NNNNNNNNNNNN---NNNNNNNNNN--NNNNNNNNNNNNNNNNNNNNGATTGATAAAAGCATTAAACAGGATACAAATAATATTTT-----TGTACATGTATGTATgaaattaaaaactatataattatgtt
gi|16 : TAACACAAG---AAA------------------T--GTCAAAGGTTATTTAAGTAATAAATACCCTAAAAGTGGTCTGTCATTGTAA--AGGT----GT-----A-----CT-------TT-AT-----GATTATATTTTGGATTTTAACAA--AAAAGTT--ACCTTGATCTTCT-TACCTGT--ATCTTGCATATAATCTGTCCATCTTGTGATGTTTATCATTTGTGACAAATCATTTTTAAACCCCTC-ATGAACAA
gi|2 : gtgaacAACATAATTTCAAAATTATTA---TGAAAAGA----TTTAAAAC-GCCTTATTTTGATTTAAAGA-AATTCAAAGAAAAGATCTGTTATAATATTAAAGAATGTTT--TAATTGTGCTA----AC---AATC---TATT----ATCATAA-------TTATACT--TT-----------CAGATTATATTCATTTAGTTATTGAAA-GAACCTTTGTAATCCACCCTGTACATCCGTTAACGAGAGACAATCAATGTGGCACCAC---CATGTACAATCATTCTAGTGAGATAT----A-----T---------------------------------GGAAC-----------TCGA--CATCTGATTCGTGGCTTTCTGAT---GGTGCGACTCATGGTGAGGAATATTCTGTATTGCTTTTAAA-GTTTTGATTGTAAGACATCAGATAAAAGCAGCAGCTATGTCATATGCAATATATAACT-AAACAATTCTGTTTTGGGTGGGATCTTCCATGACCGACTGATCCTAAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTT-GGGCACCTAGTTAATTTTATAATGGAGAGTTGATGATAAAACAAAAAA------------------T--GTCA----CTTAT-AATTGTTAAATACCTAAGAAGCAGTGTGTAAATGAAAATACAT-----------------A--------TT-GC-----GACTA-TTTTAGAG--TTAATAA--AACACCTTGACATTGA-CGTAT-GAGTTACAGATCTTG-GTGAAACATGT-CATGAAGTGATG---ATTATTTGTG--TGGTTATTTCAAATCTCCACACCGAATTAAAACATTAAACAGGATACAAATAACATGTTCTTTATctaagttag
gi|21 : AAGATCTATTTTAATATTGAAGAAAGTTTAATAATC-TACTAGAAAAT---AATTATTTGTT----ATCATAA-------TTATGATATTTT---TCAGTTGCAGGTTATATTTATTAAGTTATTAAAA-TAACCTTTGTAGTCCACCCT
gi|22 : ---AAA------------------T--GTCA----CCAGT-AAGTGACAAAT-----------GGCCTGTGATTGTAAAGAT-T----GT-----A-----AAACGTGCTTT-GT-----GACTATATTTGGAA--TTTCTAAAGAAAAATGTAACCTTGA-CATA
gi|25 : ataaccagAGAACATTAAACAGGATACAATTTACACTTTCTGTATATACATGTATATAT
gi|26 : AATAAAAGCATTAAACAGTATACGAATAACA-TTTTTTTACATATATGg
gi|27 : tAAG---AAA------------------T--GTCA----CTAGT-AAGTGACAAATGTCCCAGGTGTGATCTGTG
gi|3 : TTTGGTTCAAAAC-TTTTCAAA-AAAAGATCTGTTTAAATATTGAAAAATGTTT--TAATTGTAC-A----ACTAGAATT---TTTTTTTTATCATAA-------TTATACT--TTT---CCAGTTTTAGGTTATATTCATTTAGTTACTGAAA-GAACCTTTATTATCCACCCTGTACAACCGGTTATGAGAGACAATCAATGTGGTACCAC---CATGTACAATCATTCATGTGAAATAT----A-----TGGACTA-----T--A-------GT------AAGGGAAC-----------TCGA--CATCTAATTCATGGATTTCTGAT---GATGCGACTCATGGTGAGAAATATTCTTTATTGCTTGTAAAAGTTTTGAATGTAAAGCATCAGATAGAAGCAGCAGCTATGTCATATGCAATAGATTACT-AATAAATTTTGTTTTGGGTGGGATCCTCCATGACTGATTGATTCTAAG
gi|3 : TGATGATATG-T--AGAGTTGATAGTGAAAC---AGAAAG---------------T--GTTG----CTAAT-AGGTGATAAATGCCCCAGAAGCAGTCTGTGAATGAAAATACAT----GT-----ATGTATA--------TT-CT-----GACTGTTTTCAGGG--TTAATAA--ATAAACTTGACTTTGA-CCTAT-GA---ACAGATCTTT-GTGTAACAGGT-CATG-TTTGATG---ATTATTTATA--TGGTTATCTAGGAATCTTGCAATGAATGAAAACATTAAACAGGATATGAATAACACTTCCTGCATATACATGTATATATattacttgtgtctcaccactgaggcctggtnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnagagtatcagaatttactgatgatatgtagagttgatagtgaaacagaaagtgttgctaataggtgataaatgccccagaagcagtctgtgaatgaaaatacatgtatgtatattctgactgttttcagggttaataaataaacttgactttgacctatgaacagatctttgtgtaacaggtcatgtttgatgattatttatatggttatctaggaatcttgcaatgaatgaaaacattaaacaggatatgaataacacttcctgcatatacatgtatatatgta
gi|4 : tttggttcaaaacttttcaaaaaaagatctgtttaaatattgaaaaatgttttaattgtacaactagaattttttttttatcataattatacttttccagttttaggttatattcatttagttactgaaagaacctttattatccaccctgtacaaccggttatgagagacaatcaatgtggtaccaccatgtacaatcattcatgtgaaatatatggactatagtaagggaactcgacatctaattcatggatttctgatgatgcgactcatggtgagaaatattctttattgcttgtaaaagttttgaatgtaaagcatcagatagaagcagcagctatgtcatatgcaatagattactaataaattttgttttgggtgggatcctccatgactgattgattctaagattacttgtgtctcaccactgaggcctggtnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnagagtatcagaatttacTA----AA---AATG---TATT----ATCGTAA-------TTATGCT--TTT---CCAG------ATTATTTTTAGTTAGTTGTTGAAA-GAACTTTTGTAATCCACCCTGTACAACCAGTAATGAGAGACAATCAGTGTGTCACCAC---CATGTACAATCATTCATGTGAGATAT----A-----C-----A-----TGGA-------CTTATTCAAAGGGAAC-----------TAGA--CATGTGATTCATAGATTTGTTAC---GATGCAACTCATGGTAAGAAATATTCTTTATTGCTTGTAAAAGTTTTGACTGTAAGACATCAGATAGAAGCAGCAGCTATGTCATATGCAACAGATTACT-AATAAAGTCTATTTTCTGTGGAATTCTCCATGACCAATTGATCTTAAGgta
gi|4 : ctaacagtctactagaaatACTT-GGGCACCTGTTTGATCATATG---GAGAGTTGATAATAAAAC---AAAA-----------------TAGGTCA----CTCGT-AAGTGATAAATACCCTGGAAGCTGTCTGTAGATGAAAATA--T----GT-----A-----T--------TTTGT-----AA--ATTGTTACTA--TTATTAA--AAACACATGACCTTGA-GCTACAGACCTG--GATCTTG-GTGCAACACGT-TGTGATGTGATG---ATTATTTGTG--TAGTTATATCAAAACCCCTTAATGAATAAAAACATTAGACATGTTATGAATACCACTTTCatcagatgtctctaaccacttaggtnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntgaattacttgggcacctgtttgatcatatggagagttgataataaaacaaaataggtcactcgtaagtgataaataccctggaagctgtctgtagatgaaaatatgtattttgtaaattgttactattattaaaaacacatgaccttgagctacagacctggatcttggtgcaacacgttgtgatgtgatgattatttgtgtagttatatcaaaaccccttaatgaataaaaacattagacatgttatgaataccactttc
gi|5 : ctaacagtctactagaaattaaaaatgtattatcgtaattatgcttttccagattatttttagttagttgttgaaagaacttttgtaatccaccctgtacaaccagtaatgagagacaatcagtgtgtcaccaccatgtacaatcattcatgtgagatatacatggacttattcaaagggaactagacatgtgattcatagatttgttacgatgcaactcatggtaagaaatattctttattgcttgtaaaagttttgactgtaagacatcagatagaagcagcagctatgtcatatgcaacagattactaataaagtctattttctgtggaattctccatgaccaattgatcttaagatcagatgtctctaaccacttaggtnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntgaattGTTTCAGATTATACTTATTTAGTTATTGAAA-GAAACTTTGTAATCAACCCTGTACAACCGGTAATGAGAAACAGTTGATGTGGTACCACATCTGTCTGCAATCATTCATGTGAGATAT----G-----T-----AGACTAT--A-------CT------AAGGGAAC-----------TCAA--TATGTGATTCACGGATTTCTGAT---GATGTGACTAATGGTTAGGAATATTCTGTATTGTTTGTAAAAGTTTTGACTGTTACACATCAGATAGAAGCAGCAGCTATGCCATATGCAACAGATTACC-AATAAATTCTATTTTGGGAGGGATTCTCCATGTCCGATCAATCCT
gi|5 : ACTTCGGGCATCTGTTTGAT---------GAATGTTGATTATAAAAC---AAACTAAAAATGTCACCAAAAT--GTCA----CTTAT-AAGTGATAAATGCCTCATAAGCAGTCTGTGAATGAAAATACATATATGT-----A-----A--------CT-ATATTTCGACTAATTTT-GGG--TTAATAA--AAAAACTTGACCTTTA-CCTTT-GAGTTACAGATCTTA-GTGCAACATAT-CATGATGTGATG---ATTATTTGTG--TAGTTATTT--------CGCAATGAATCAAAACATAAAATTGAATACtcaaatttcttgtctctcaccgctgaggttgggtnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnttacttcgggcatctgtttgatgaatgttgattataaaacaaactaaaaatgtcaccaaaatgtcacttataagtgataaatgcctcataagcagtctgtgaatgaaaatacatatatgtaactatatttcgactaattttgggttaataaaaaaacttgacctttacctttgagttacagatcttagtgcaacatatcatgatgtgatgattatttgtgtagttatttcgcaatgaatcaaaacataaaattgaatacctata
gi|6 : gtttcagattatacttatttagttattgaaagaaactttgtaatcaaccctgtacaaccggtaatgagaaacagttgatgtggtaccacatctgtctgcaatcattcatgtgagatatgtagactatactaagggaactcaatatgtgattcacggatttctgatgatgtgactaatggttaggaatattctgtattgtttgtaaaagttttgactgttacacatcagatagaagcagcagctatgccatatgcaacagattaccaataaattctattttgggagggattctccatgtccgatcaatccttcaaatttcttgtctctcaccgctgaggttgggtnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnttCTA----AA---AATG---TATT----ATCATAA-------TTATGCT--TTT---CCA-TTTCGGATTATATTTAGTTAGTTATTGAAA-GAACCTTTGTAATCCACCCTATACAACAAGTAATGAGAGACAATCAATGTGTCACCAC---CATGTACAATCATTCATTTGAGATAT----A-----T-----A-----TGTA-------CTTATTGTAAGGGAAC-----------TAGA--CATGTGATTCATAGATTTCTTAT---GATGTGACTCGTGGTAAGGAATATTCTTTATTGCTTGTAAAAGTTTTGACTGTAAGATATCAGATAGAAGCAGCAGCTATGTCATATACAACAGATTAGC-AATAAGTTGTATTTTGTGTGGAATTCTCTATGACGAACTGATCTTAAGctata
gi|6 : actagaa-GGGCACCTGTTTGATTATATGA---AGAGTTGATAATTAAACA--AAA------------------TGGGTCA----CTCGT-AAGTGGTatcacttaggtnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnagtaccccactctgaatttacaagggcacctgtttgattatatgaagagttgataattaaacaaaatgggtcactcgtaagtggt
gi|7 : actagaactaaaaatgtattatcataattatgcttttccatttcggattatatttagttagttattgaaagaacctttgtaatccaccctatacaacaagtaatgagagacaatcaatgtgtcaccaccatgtacaatcattcatttgagatatatatgtacttattgtaagggaactagacatgtgattcatagatttcttatgatgtgactcgtggtaaggaatattctttattgcttgtaaaagttttgactgtaagatatcagatagaagcagcagctatgtcatatacaacagattagcaataagttgtattttgtgtggaattctctatgacgaactgatcttaagatcacttaggtnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnagtaccccactctgaatttacaa---AAT----TGTT----GTTATAAAATTTTTTTATTTT--TTT---TCAGTATCAGATTATATTCATTTAGTTATTGAAAAGAACCTTTGTAATCCACCCTGTACAACTGGTAATGAGAGACAATCAATGTGGTACCAT---CGTGTACAATCATTCATGTGAGATAT----AGGGACT-----T-----T--A-------CT------AAGATAAC-----------TCAA--CACCTGGTTCATGGAATTCTGAT---GATGCGACTCATGGTGAGGAAAATTCTTTATTGCTTGTAAAAGTTTTGACTGTAAGACATCAGATAGAAGCAGCAGGTATGTCATATGCAATAGATTACTAAACAAA-TCTGTTTTGGGTGGGATCCTCCATGATCGATT
gi|8 : ttacgcttagtttattgttgttgtttttaggagtttgcttaaaggtgaagttttattttatcaaattcctgcagttttaaattattttaaagaaaataatgtgaccttgcttgacttttatatgatttgcgcattgttgcaatttacaaaaacataatttcaaCATTCATGTGAGATAT----A-----T-----A-----T--GGACTTTTCT------AAGGGAAC-----------TTGA--CATCTAATTCATGAATTTCTGAT---GAT--------TAGAAAGGAATATTCTTTATTGC
gi|8 : GCAGCTTTATCCTATACAATAGATTACT-AGTAAATTCTATTATGAGCGGGGTCCTCCATGACCAATTGATCCTAAGagctttatcctatacaatagattactagtaaattctattatgagcggggtcctccatgaccaattgatcctaagattacttttctctcaccgctgagctcggatggacaattattctgctccaccaataaagcagggtgcagtataacatattatgcgtaacagtgttaaaccacacttaaactttaattaggcacttgtttgattatatgtggagttgataataaaactaaaaatgtcactaataagtgataaatgcccccgaagcaatctgtgtatgaaaatacatgcatgtatattgtggctattttgagggtttataataaatgccccggaagcaatctgtgtatgaaaatacatgtatgtaaattgtgactattttgaaggtta
gi|8 : cattcatgtgagatatatatggacttttctaagggaacttgacatctaattcatgaatttctgatgattagaaaggaatattctttattTT-AGGCACTTGTTTGATTATATG-TG--GAGTTGATAATAAAACTAAAAA------------------T--GTCA----CTAAT-AAGTGATAAATGCCCCCGAAGCAATCTGTGTATGAAAATACAT----GC-----ATGTATA--------TT-GT-----GGCTATTTTGAGGG--TTTATAA--TAAAattacttttctctcaccgctgagctcggatggacaattattctgctccaccaataaagcagggtgcagtataacatattatgcgtaacagtgttaaaccacacttaaactttaattaggcacttgtttgattatatgtggagttgataataaaactaaaaatgtcactaataagtgataaatgcccccgaagcaatctgtgtatgaaaatacatgcatgtatattgtggctattttgagggtttataataaatgccccggaagcaatctgtgtatgaaaatacatgtatgtaaattgtgactattttgaaggtta
gi|8 : cattcatgtgagatatatatggacttttctaagggaacttgacatctaattcatgaatttctgatgattagaaaggaatattctttattgcagctttatcctatacaatagattactagtaaattctattatgagcggggtcctccatgaccaattgatcctaagattacttttctctcaccgctgagctcggatggacaattattctgctccaccaataaagcagggtgcagtataacatattatgcgtaacagtgttaaaccacacttaaactttaaTAATAAATGCCCCGGAAGCAATCTGTGTATGAAAATACAT----GTATGTAA-----A--------TT-GT-----GACTATTTTGAAGG--TTAtgccccggaagcaatctgtgtatgaaaatacatgtatgtaaattgtgactattttgaaggtta
gi|9 : cattcatgtgagatatatatggacttttctaagggaacttgacatctaattcatgaatttctgatgattagaaaggaatattctttattgcagctttatcctatacaatagattactagtaaattctattatgagcggggtcctccatgaccaattgatcctaagattacttttctctcaccgctgagctcggatggacaattattctgctccaccaataaagcagggtgcagtataacatattatgcgtaacagtgttaaaccacacttaaactttaattaggcacttgtttgattatatgtggagttgataataaaactaaaaatgtcactaataagtgataaatgcccccgaagcaatctgtgtatgaaaatacatgcatgtatattgtggctattttgagggtttaACATAATT-CAAAATTGTTA---AAAAAAAA----ACAAAAAAAGCTTTATTTTGGTTCAGAAA-TTTTCAAAGAAAATATGTACTTTAATATTGAAGAATGTTT--CAGTTGTGCTA----AC---AATC---TACT----A--GAAA-------TTAA------TT---TAAAATAGAGATAATACTTATTTAGTTATTGAAA-GAACCTTTGTAATCCACCCTGTACAACTGGTAATGAGAAACAATTGATGTGGTACCAC---CATCTGCAATCATTCATGTGAGATAT----GTAGACT-----A-----T--A-------CT------AAGGGAAC-----------TCAA--TATGTGATTCAAGGAT
6 sequences could not be aligned to this reference sequence:
Unaligned ( gi|17 ): CAGTGTATTGTTGTTTTATTTGATCAAATTGCTGCATCTGAAAGCTCCATTATTAAGGAAAATCATGTGACCTTGCTTGACATTTATATGATATGCTCACTGTTGCACAAAAACAGTATTTTAAAATTGTTGTTATAAAAATATTTTTAAAGCCTTAGTT
Unaligned ( gi|18 ): TACACTCCAGTGTATTCTTGTTGTTTTAAGATGATTTTGCTTTAAGATAATGTTTTATTAAATTGTTGCATCTTTAAAATCTGTAATGAAAGAAAATCATTTGGCCTTTTATGATATGTTCATTGTTGTTATTTTCAATAATCATAATTTTA
Unaligned ( gi|19 ): TGCATGTCAATGTATTGTTGTTGTTTTTAAGATGATTTTGCTTTAAGATCGTGTTTTATTAAATTGCTGCAATTTTATGAACCGTTTTGAAGGAAAGTCACATGACCTTTTATGATATGCTCATTGTTGCTATTTTCAAAACATAATTA
Unaligned ( gi|20 ): TACACTCCAGTGTATTCTTGTTGTTTTTACTTTAAGATAATGTTTTATTGAATTGTTGCATCTTTAAAATCTGTAATGAAGGAAAATCATTTGGTCTTTTACGATATGCTCATTGTTGCTAATTTCAAAAAACATAATTT
Unaligned ( gi|23 ): AAGTCATGTGACCTTGCTTCGCTTTTATATGATATGCTCATTATGTTGTTATTTTCAAAGACATA
Unaligned ( gi|24 ): TTGTTGTTTTGAGGAGTTTTCTTTAAGATCATGTTTGATTTTATCAAATTGCTGCAT
Alignments
lowQualScore : 1111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 1 111 11111 1111 1111111 11 66666666666666666666666666666666666666666 33333333333 111 2222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222 3333 1111 444444444444444444444 55555555555555555555555555 11111 111 11
lowQualScore : 0 444 1 88888 1 88 1 1 77 2 0 0 77 9999 7777 1111 8888 4444444 6 00 777 0 0 3 1 1 5 1 666 99999999999999999999999999999999999999999 11111111111 99 1 222 1 4 7777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777 6 3 2222 9999 222222222222222222222 8888 11 4 0 3 2 0 66666666666666666666666666 4 00000 55 66 5 1 5 5 33 5 5 3 000 77 00 3 3 0 1 4 3
lowQualScore : . ... . ..... . .. . . .. . . . .. .... .... .... .... ....... . .. ... . . . . . . . ... ......................................... ........... .. . ... . . ............................................................................................................................... . . .... .... ..................... .... .. . . . . . .......................... . ..... .. .. . . . . .. . . . ... .. .. . . . . . .
lowQualScore : 6 000 0 00000 0 66 4 0 77 5 7 4 99 4444 1111 8888 5555 4444444 4 66 888 9 8 3 2 3 5 8 444 44444444444444444444444444444444444444444 77777777777 22 0 777 4 0 0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 7 6 4444 1111 555555555555555555555 5555 55 0 4 3 5 3 11111111111111111111111111 0 00000 55 11 0 0 7 9 99 7 7 1 000 99 11 3 3 1 0 0 0
consensus : AACATAATTTCAAAATTGTTA---TAAAAANA----TTTAAAAA-GCCTTATTTTGGTTCAAAAA-NTTTCAAAGAAAAGATCTGTTTTAATATTGAAGAATGTTT--TAGTTGTGCTA----AC---AATC---TATT----ATCATAA-------TTATGCT--TTT---TCAGTTTCAGATTATATTCATTTAGTTATTGAAA-GAACCTTTGTAATCCACCCTGTACAACCGGTAATGAGAGACAATCGATGTGGCACCAC---CATGTACAATCATTCATGTGAGATAT----A-----T-----A-----T--A-------CT------AAGGGAAC-----------TCGA--CATCTGATTCATGGATTTCTGAT---GATGCGACTCATGGTGAGGAATATTCTGTATTGCTTGTAAAAGTTTTGACTGTAAGACATCAGATAGAAGCAGCAGCTATGTCATATGCAACAGATTACT-AATAAATTCTGTTTTGGGTGGGATCCTCCATGACCGATTGATCCTAAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGACTT-GGGCACCTGTTTGATTATATGATGGAGAGTTGATAATAAAAC---AAA------------------T--GTCA----CTAGT-AAGTGATAAATGCCCCGGAAGCGGTCTGTGAATGAAAATACAT----GT-----A-----A--------TT-GT-----GACTATTTTTAGGG--TTAATAA--AAAAACTTGACCTTGA-CNTAT-GAGCTACAGATCTTG-GTGCAACATGT-CATGATGTGATG---ATTATTTGTG--TGGTTATTTCGAAACCCCGCAATGAATNAAAACATTAAACAGGATACGAATAACACTTTCTTTATATACATGTATGTAT
Reference ( family-146 ) : AACATAATTTCAAAATTGTTA---TAAAAANA----TTTAAAAA-GCCTTATTTTGGTTCAAAAA-NTTTCAAAGAAAAGATCTGTTTTAATATTGAAGAATGTTT--TAGTTGTGCTA----AC---AATC---TATT----ATCATAA-------TTATGCT--TTT---TCAGTTTCAGATTATATTCATTTAGTTATTGAAA-GAACCTTTGTAATCCACCCTGTACAACCGGTAATGAGAGACAATCGATGTGGCACCAC---CATGTACAATCATTCATGTGAGATAT----A-----T-----A-----T--A-------CT------AAGGGAAC-----------TCGA--CATCTGATTCATGGATTTCTGAT---GATGCGACTCATGGTGAGGAATATTCTGTATTGCTTGTAAAAGTTTTGACTGTAAGACATCAGATAGAAGCAGCAGCTATGTCATATGCAACAGATTACT-AATAAATTCTGTTTTGGGTGGGATCCTCCATGACCGATTGATCCTAAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGACTT-GGGCACCTGTTTGATTATATGATGGAGAGTTGATAATAAAAC---AAA------------------T--GTCA----CTAGT-AAGTGATAAATGCCCCGGAAGCGGTCTGTGAATGAAAATACAT----GT-----A-----A--------TT-GT-----GACTATTTTTAGGG--TTAATAA--AAAAACTTGACCTTGA-CNTAT-GAGCTACAGATCTTG-GTGCAACATGT-CATGATGTGATG---ATTATTTGTG--TGGTTATTTCGAAACCCCGCAATGAATNAAAACATTAAACAGGATACGAATAACACTTTCTTTATATACATGTATGTAT
gi|1 : AACATAATTTCAAAATTATTA---TGAAAATA----TTTAAAAC-GCATTATCTTGGTTAAAAAA-AT--CAAATAACAGATCTGTTTTAATATTAAAATATGTTT--TAGTTGTGCTA----AC---AATC---TATT----ATCATAA-------TTATACTA-TTT---TCAGTTTCAGATTATATTCATTAAGTTATTGAAA-GAACCTTTGTAATCCACCCTGTACAACCGGTAACGAGAGACAATCAATGTGGCACCAC---CATGTACAATCATTCTTGT-----AT----A-----T-----A-----T---------------------GGAAC-----------TCGA--CATCTGATTCGTGGACTTCTGAT---GGTGCGACTCATGGTGATGAATATTCTGTATTGCTTGTAAAAGTTTTGACTGTAAGACATCAGATAGAAGCAGCAGCTATGTCATATGCAATAGATAACT-AAACAATTCTGTTTTGGGTGGGATCTTCTATGACTGATTGAACCTGAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGACTT-GGGCACCTCGTTCATTATATAATGGAGAGTTGATGATAAAA----AAA------------------T--GTCA----CTAAT-AAGTGATAAATACCCAAGGAGCAGTGTGTAAATGAATAGACAT-----------------A--------TT-GC-----GACTATCTTTAGAG--TAAATAA--AACAACTTGACCTTGA-CGTAT-GAGCTACAGGTCTTG-GTGCAACATGT-CATGAAGTGATG---ATTATTTGTG--TGGTTATTTCAAATCCCCACACTGAATTAAAACATTAAACAGGATACAAATAACATTTTCTTTATATTCATGTGTGTAT
gi|10 : TA----AA---AAAT---TATT----AGCATAA-------TTATCCT--TTTTTTTCAGTTTCAGATTGTATTCATTTAGTTATCAAAA-GAACCTTTGTAATCCACCCTGTACAACTGGCAATGAGAGACAATCTATGTGGTACCAC---CATGTACAATCAGTCATGTGAGATAT----ATGGACT-----A-----T--T-------CT------AAGTGAAC-----------TTGA--CATCTTATTCATGGATTTCTGAC---GATGCAACTCATGGTGAGGAATATTCTGTATTGCTTGTTAAAGTTTTGACTGTAGCACATCATATAGAAGCAGCAGTTATATCATATGCAA
gi|11 : aatAACATAATTTCAAAACTGTTGCTCTAAATCTA----TTTAACAA-GCCTTATTTT-GTTAAAAAAGAATTCAAAGAAAATATCTATTTTAATATTGAAGAATGTTT--t
gi|12 : ttacacttcagtgtattgttgttgtttttaagattttgctttaagatcatgttttattttatcaactttccgcatcttcaaattcctttattaaggaaaatcatgtgaccttgcttgacttttatatggtatgctcattgctgctattttcaaaAAA-AAACCTTTGTAATCCACCCTGTACAACATGTAATAGGAGACA---------------C---CATGTACAATTGTTCATGCAAACTATTTTGAC----T-----A-----T--A-------CT------TGGGGAACTGTGCCACATTTTGATTCATTTGATTCATAGATTGCTGATTAAAATACATCACATGGTAAGGAATATTGTGTTCTGTTTGTAAAAGTTTTGACTGCAAGACATCAGATAGAAGCAGCAGTCATGTCATACGCAACCGAATAAC-AATACATTTTacg
gi|13 : AAA-GAACCTTTGTAATCCACCCTGTACAACATGTAATAGGAGACA---------------C---CATGTACAATTGTTCATGCAAACTATTTTGAC----T-----A-----T--A-------CT------TAGGGAACTGTGCCACATTTTGATTCATTTGATTCATAGATTGCTGATTAAAATACATCACATGGTAAGGAATATTGTGTTCTGTTTGTAAAAGTTTTGACTGCAGGACATCAGATAGAAGCAGCAGTCATGTCATACGCAACCGAATAAC-AATACATT
gi|14 : ACATAATT-CAAAATTGTTA---TAAAAACAAAAA---AAAAA-GTTTTATTTTGGTTCAGAAA-TTTTCAAAGAGAATATCTTCTTTAACATTGAAAAATGTTT--CAGTTGTGCTA----AC---AATC---TACT----A
gi|15 : ttacactttagtgtattgttgtttttaagatcatgttttattttatcgaattgttgcatctttaggaaaatcatgtgacctttcttgTAATAAATGCCCCGGAAGCAATCTGTGTATGAAAATACAT----GT-----ATGTAAA--------TT-GT-----GACTATTTTGAAGG--TTAANNN--NNNNNNNNNNNNNNNN-NNNNN-NNNNNNNNNNNNNNN-NNNNNNNNNNN-NNNNNNNNNNNN---NNNNNNNNNN--NNNNNNNNNNNNNNNNNNNNGATTGATAAAAGCATTAAACAGGATACAAATAATATTTT-----TGTACATGTATGTATgaaattaaaaactatataattatgtt
gi|16 : TAACACAAG---AAA------------------T--GTCAAAGGTTATTTAAGTAATAAATACCCTAAAAGTGGTCTGTCATTGTAA--AGGT----GT-----A-----CT-------TT-AT-----GATTATATTTTGGATTTTAACAA--AAAAGTT--ACCTTGATCTTCT-TACCTGT--ATCTTGCATATAATCTGTCCATCTTGTGATGTTTATCATTTGTGACAAATCATTTTTAAACCCCTC-ATGAACAA
gi|2 : gtgaacAACATAATTTCAAAATTATTA---TGAAAAGA----TTTAAAAC-GCCTTATTTTGATTTAAAGA-AATTCAAAGAAAAGATCTGTTATAATATTAAAGAATGTTT--TAATTGTGCTA----AC---AATC---TATT----ATCATAA-------TTATACT--TT-----------CAGATTATATTCATTTAGTTATTGAAA-GAACCTTTGTAATCCACCCTGTACATCCGTTAACGAGAGACAATCAATGTGGCACCAC---CATGTACAATCATTCTAGTGAGATAT----A-----T---------------------------------GGAAC-----------TCGA--CATCTGATTCGTGGCTTTCTGAT---GGTGCGACTCATGGTGAGGAATATTCTGTATTGCTTTTAAA-GTTTTGATTGTAAGACATCAGATAAAAGCAGCAGCTATGTCATATGCAATATATAACT-AAACAATTCTGTTTTGGGTGGGATCTTCCATGACCGACTGATCCTAAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTT-GGGCACCTAGTTAATTTTATAATGGAGAGTTGATGATAAAACAAAAAA------------------T--GTCA----CTTAT-AATTGTTAAATACCTAAGAAGCAGTGTGTAAATGAAAATACAT-----------------A--------TT-GC-----GACTA-TTTTAGAG--TTAATAA--AACACCTTGACATTGA-CGTAT-GAGTTACAGATCTTG-GTGAAACATGT-CATGAAGTGATG---ATTATTTGTG--TGGTTATTTCAAATCTCCACACCGAATTAAAACATTAAACAGGATACAAATAACATGTTCTTTATctaagttag
gi|21 : AAGATCTATTTTAATATTGAAGAAAGTTTAATAATC-TACTAGAAAAT---AATTATTTGTT----ATCATAA-------TTATGATATTTT---TCAGTTGCAGGTTATATTTATTAAGTTATTAAAA-TAACCTTTGTAGTCCACCCT
gi|22 : ---AAA------------------T--GTCA----CCAGT-AAGTGACAAAT-----------GGCCTGTGATTGTAAAGAT-T----GT-----A-----AAACGTGCTTT-GT-----GACTATATTTGGAA--TTTCTAAAGAAAAATGTAACCTTGA-CATA
gi|25 : ataaccagAGAACATTAAACAGGATACAATTTACACTTTCTGTATATACATGTATATAT
gi|26 : AATAAAAGCATTAAACAGTATACGAATAACA-TTTTTTTACATATATGg
gi|27 : tAAG---AAA------------------T--GTCA----CTAGT-AAGTGACAAATGTCCCAGGTGTGATCTGTG
gi|3 : TTTGGTTCAAAAC-TTTTCAAA-AAAAGATCTGTTTAAATATTGAAAAATGTTT--TAATTGTAC-A----ACTAGAATT---TTTTTTTTATCATAA-------TTATACT--TTT---CCAGTTTTAGGTTATATTCATTTAGTTACTGAAA-GAACCTTTATTATCCACCCTGTACAACCGGTTATGAGAGACAATCAATGTGGTACCAC---CATGTACAATCATTCATGTGAAATAT----A-----TGGACTA-----T--A-------GT------AAGGGAAC-----------TCGA--CATCTAATTCATGGATTTCTGAT---GATGCGACTCATGGTGAGAAATATTCTTTATTGCTTGTAAAAGTTTTGAATGTAAAGCATCAGATAGAAGCAGCAGCTATGTCATATGCAATAGATTACT-AATAAATTTTGTTTTGGGTGGGATCCTCCATGACTGATTGATTCTAAG
gi|3 : TGATGATATG-T--AGAGTTGATAGTGAAAC---AGAAAG---------------T--GTTG----CTAAT-AGGTGATAAATGCCCCAGAAGCAGTCTGTGAATGAAAATACAT----GT-----ATGTATA--------TT-CT-----GACTGTTTTCAGGG--TTAATAA--ATAAACTTGACTTTGA-CCTAT-GA---ACAGATCTTT-GTGTAACAGGT-CATG-TTTGATG---ATTATTTATA--TGGTTATCTAGGAATCTTGCAATGAATGAAAACATTAAACAGGATATGAATAACACTTCCTGCATATACATGTATATATattacttgtgtctcaccactgaggcctggtnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnagagtatcagaatttactgatgatatgtagagttgatagtgaaacagaaagtgttgctaataggtgataaatgccccagaagcagtctgtgaatgaaaatacatgtatgtatattctgactgttttcagggttaataaataaacttgactttgacctatgaacagatctttgtgtaacaggtcatgtttgatgattatttatatggttatctaggaatcttgcaatgaatgaaaacattaaacaggatatgaataacacttcctgcatatacatgtatatatgta
gi|4 : tttggttcaaaacttttcaaaaaaagatctgtttaaatattgaaaaatgttttaattgtacaactagaattttttttttatcataattatacttttccagttttaggttatattcatttagttactgaaagaacctttattatccaccctgtacaaccggttatgagagacaatcaatgtggtaccaccatgtacaatcattcatgtgaaatatatggactatagtaagggaactcgacatctaattcatggatttctgatgatgcgactcatggtgagaaatattctttattgcttgtaaaagttttgaatgtaaagcatcagatagaagcagcagctatgtcatatgcaatagattactaataaattttgttttgggtgggatcctccatgactgattgattctaagattacttgtgtctcaccactgaggcctggtnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnagagtatcagaatttacTA----AA---AATG---TATT----ATCGTAA-------TTATGCT--TTT---CCAG------ATTATTTTTAGTTAGTTGTTGAAA-GAACTTTTGTAATCCACCCTGTACAACCAGTAATGAGAGACAATCAGTGTGTCACCAC---CATGTACAATCATTCATGTGAGATAT----A-----C-----A-----TGGA-------CTTATTCAAAGGGAAC-----------TAGA--CATGTGATTCATAGATTTGTTAC---GATGCAACTCATGGTAAGAAATATTCTTTATTGCTTGTAAAAGTTTTGACTGTAAGACATCAGATAGAAGCAGCAGCTATGTCATATGCAACAGATTACT-AATAAAGTCTATTTTCTGTGGAATTCTCCATGACCAATTGATCTTAAGgta
gi|4 : ctaacagtctactagaaatACTT-GGGCACCTGTTTGATCATATG---GAGAGTTGATAATAAAAC---AAAA-----------------TAGGTCA----CTCGT-AAGTGATAAATACCCTGGAAGCTGTCTGTAGATGAAAATA--T----GT-----A-----T--------TTTGT-----AA--ATTGTTACTA--TTATTAA--AAACACATGACCTTGA-GCTACAGACCTG--GATCTTG-GTGCAACACGT-TGTGATGTGATG---ATTATTTGTG--TAGTTATATCAAAACCCCTTAATGAATAAAAACATTAGACATGTTATGAATACCACTTTCatcagatgtctctaaccacttaggtnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntgaattacttgggcacctgtttgatcatatggagagttgataataaaacaaaataggtcactcgtaagtgataaataccctggaagctgtctgtagatgaaaatatgtattttgtaaattgttactattattaaaaacacatgaccttgagctacagacctggatcttggtgcaacacgttgtgatgtgatgattatttgtgtagttatatcaaaaccccttaatgaataaaaacattagacatgttatgaataccactttc
gi|5 : ctaacagtctactagaaattaaaaatgtattatcgtaattatgcttttccagattatttttagttagttgttgaaagaacttttgtaatccaccctgtacaaccagtaatgagagacaatcagtgtgtcaccaccatgtacaatcattcatgtgagatatacatggacttattcaaagggaactagacatgtgattcatagatttgttacgatgcaactcatggtaagaaatattctttattgcttgtaaaagttttgactgtaagacatcagatagaagcagcagctatgtcatatgcaacagattactaataaagtctattttctgtggaattctccatgaccaattgatcttaagatcagatgtctctaaccacttaggtnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntgaattGTTTCAGATTATACTTATTTAGTTATTGAAA-GAAACTTTGTAATCAACCCTGTACAACCGGTAATGAGAAACAGTTGATGTGGTACCACATCTGTCTGCAATCATTCATGTGAGATAT----G-----T-----AGACTAT--A-------CT------AAGGGAAC-----------TCAA--TATGTGATTCACGGATTTCTGAT---GATGTGACTAATGGTTAGGAATATTCTGTATTGTTTGTAAAAGTTTTGACTGTTACACATCAGATAGAAGCAGCAGCTATGCCATATGCAACAGATTACC-AATAAATTCTATTTTGGGAGGGATTCTCCATGTCCGATCAATCCT
gi|5 : ACTTCGGGCATCTGTTTGAT---------GAATGTTGATTATAAAAC---AAACTAAAAATGTCACCAAAAT--GTCA----CTTAT-AAGTGATAAATGCCTCATAAGCAGTCTGTGAATGAAAATACATATATGT-----A-----A--------CT-ATATTTCGACTAATTTT-GGG--TTAATAA--AAAAACTTGACCTTTA-CCTTT-GAGTTACAGATCTTA-GTGCAACATAT-CATGATGTGATG---ATTATTTGTG--TAGTTATTT--------CGCAATGAATCAAAACATAAAATTGAATACtcaaatttcttgtctctcaccgctgaggttgggtnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnttacttcgggcatctgtttgatgaatgttgattataaaacaaactaaaaatgtcaccaaaatgtcacttataagtgataaatgcctcataagcagtctgtgaatgaaaatacatatatgtaactatatttcgactaattttgggttaataaaaaaacttgacctttacctttgagttacagatcttagtgcaacatatcatgatgtgatgattatttgtgtagttatttcgcaatgaatcaaaacataaaattgaatacctata
gi|6 : gtttcagattatacttatttagttattgaaagaaactttgtaatcaaccctgtacaaccggtaatgagaaacagttgatgtggtaccacatctgtctgcaatcattcatgtgagatatgtagactatactaagggaactcaatatgtgattcacggatttctgatgatgtgactaatggttaggaatattctgtattgtttgtaaaagttttgactgttacacatcagatagaagcagcagctatgccatatgcaacagattaccaataaattctattttgggagggattctccatgtccgatcaatccttcaaatttcttgtctctcaccgctgaggttgggtnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnttCTA----AA---AATG---TATT----ATCATAA-------TTATGCT--TTT---CCA-TTTCGGATTATATTTAGTTAGTTATTGAAA-GAACCTTTGTAATCCACCCTATACAACAAGTAATGAGAGACAATCAATGTGTCACCAC---CATGTACAATCATTCATTTGAGATAT----A-----T-----A-----TGTA-------CTTATTGTAAGGGAAC-----------TAGA--CATGTGATTCATAGATTTCTTAT---GATGTGACTCGTGGTAAGGAATATTCTTTATTGCTTGTAAAAGTTTTGACTGTAAGATATCAGATAGAAGCAGCAGCTATGTCATATACAACAGATTAGC-AATAAGTTGTATTTTGTGTGGAATTCTCTATGACGAACTGATCTTAAGctata
gi|6 : actagaa-GGGCACCTGTTTGATTATATGA---AGAGTTGATAATTAAACA--AAA------------------TGGGTCA----CTCGT-AAGTGGTatcacttaggtnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnagtaccccactctgaatttacaagggcacctgtttgattatatgaagagttgataattaaacaaaatgggtcactcgtaagtggt
gi|7 : actagaactaaaaatgtattatcataattatgcttttccatttcggattatatttagttagttattgaaagaacctttgtaatccaccctatacaacaagtaatgagagacaatcaatgtgtcaccaccatgtacaatcattcatttgagatatatatgtacttattgtaagggaactagacatgtgattcatagatttcttatgatgtgactcgtggtaaggaatattctttattgcttgtaaaagttttgactgtaagatatcagatagaagcagcagctatgtcatatacaacagattagcaataagttgtattttgtgtggaattctctatgacgaactgatcttaagatcacttaggtnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnagtaccccactctgaatttacaa---AAT----TGTT----GTTATAAAATTTTTTTATTTT--TTT---TCAGTATCAGATTATATTCATTTAGTTATTGAAAAGAACCTTTGTAATCCACCCTGTACAACTGGTAATGAGAGACAATCAATGTGGTACCAT---CGTGTACAATCATTCATGTGAGATAT----AGGGACT-----T-----T--A-------CT------AAGATAAC-----------TCAA--CACCTGGTTCATGGAATTCTGAT---GATGCGACTCATGGTGAGGAAAATTCTTTATTGCTTGTAAAAGTTTTGACTGTAAGACATCAGATAGAAGCAGCAGGTATGTCATATGCAATAGATTACTAAACAAA-TCTGTTTTGGGTGGGATCCTCCATGATCGATT
gi|8 : ttacgcttagtttattgttgttgtttttaggagtttgcttaaaggtgaagttttattttatcaaattcctgcagttttaaattattttaaagaaaataatgtgaccttgcttgacttttatatgatttgcgcattgttgcaatttacaaaaacataatttcaaCATTCATGTGAGATAT----A-----T-----A-----T--GGACTTTTCT------AAGGGAAC-----------TTGA--CATCTAATTCATGAATTTCTGAT---GAT--------TAGAAAGGAATATTCTTTATTGC
gi|8 : GCAGCTTTATCCTATACAATAGATTACT-AGTAAATTCTATTATGAGCGGGGTCCTCCATGACCAATTGATCCTAAGagctttatcctatacaatagattactagtaaattctattatgagcggggtcctccatgaccaattgatcctaagattacttttctctcaccgctgagctcggatggacaattattctgctccaccaataaagcagggtgcagtataacatattatgcgtaacagtgttaaaccacacttaaactttaattaggcacttgtttgattatatgtggagttgataataaaactaaaaatgtcactaataagtgataaatgcccccgaagcaatctgtgtatgaaaatacatgcatgtatattgtggctattttgagggtttataataaatgccccggaagcaatctgtgtatgaaaatacatgtatgtaaattgtgactattttgaaggtta
gi|8 : cattcatgtgagatatatatggacttttctaagggaacttgacatctaattcatgaatttctgatgattagaaaggaatattctttattTT-AGGCACTTGTTTGATTATATG-TG--GAGTTGATAATAAAACTAAAAA------------------T--GTCA----CTAAT-AAGTGATAAATGCCCCCGAAGCAATCTGTGTATGAAAATACAT----GC-----ATGTATA--------TT-GT-----GGCTATTTTGAGGG--TTTATAA--TAAAattacttttctctcaccgctgagctcggatggacaattattctgctccaccaataaagcagggtgcagtataacatattatgcgtaacagtgttaaaccacacttaaactttaattaggcacttgtttgattatatgtggagttgataataaaactaaaaatgtcactaataagtgataaatgcccccgaagcaatctgtgtatgaaaatacatgcatgtatattgtggctattttgagggtttataataaatgccccggaagcaatctgtgtatgaaaatacatgtatgtaaattgtgactattttgaaggtta
gi|8 : cattcatgtgagatatatatggacttttctaagggaacttgacatctaattcatgaatttctgatgattagaaaggaatattctttattgcagctttatcctatacaatagattactagtaaattctattatgagcggggtcctccatgaccaattgatcctaagattacttttctctcaccgctgagctcggatggacaattattctgctccaccaataaagcagggtgcagtataacatattatgcgtaacagtgttaaaccacacttaaactttaaTAATAAATGCCCCGGAAGCAATCTGTGTATGAAAATACAT----GTATGTAA-----A--------TT-GT-----GACTATTTTGAAGG--TTAtgccccggaagcaatctgtgtatgaaaatacatgtatgtaaattgtgactattttgaaggtta
gi|9 : cattcatgtgagatatatatggacttttctaagggaacttgacatctaattcatgaatttctgatgattagaaaggaatattctttattgcagctttatcctatacaatagattactagtaaattctattatgagcggggtcctccatgaccaattgatcctaagattacttttctctcaccgctgagctcggatggacaattattctgctccaccaataaagcagggtgcagtataacatattatgcgtaacagtgttaaaccacacttaaactttaattaggcacttgtttgattatatgtggagttgataataaaactaaaaatgtcactaataagtgataaatgcccccgaagcaatctgtgtatgaaaatacatgcatgtatattgtggctattttgagggtttaACATAATT-CAAAATTGTTA---AAAAAAAA----ACAAAAAAAGCTTTATTTTGGTTCAGAAA-TTTTCAAAGAAAATATGTACTTTAATATTGAAGAATGTTT--CAGTTGTGCTA----AC---AATC---TACT----A--GAAA-------TTAA------TT---TAAAATAGAGATAATACTTATTTAGTTATTGAAA-GAACCTTTGTAATCCACCCTGTACAACTGGTAATGAGAAACAATTGATGTGGTACCAC---CATCTGCAATCATTCATGTGAGATAT----GTAGACT-----A-----T--A-------CT------AAGGGAAC-----------TCAA--TATGTGATTCAAGGAT
blockSeqs : T CTC T AAAA T AA C A GA G AA GAAA CTAG TATT TTTT AATTTTT C AT TTT A T A T T ATC ACATGGACTTATTCA TGTGCCACATT TT C TAA G A NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN C T ATGG CAAA CTAAAAATGTCACCAAAAT AAGG AT T G A GTAAAACGTGCT T ATTTC TT AG T N A N NN C C N TTT AC NN N N A T T
blockSeqs : T . C T T A T C T G . . A T . . A . . . A A A C . ATATGTACTTATTGT TGTGCCACATT TT T TAA G . . G TG CTAA AAGT . TA . A G GTATGTAAA . . . . . T . C CA . . T . . TT A T A T G
blockSeqs : . . G T A A C T A G . . C C . . G . . . A A A T . ATATGGACTTTTCT . . T . G . . C T CA ATAG . AG . A A GTATGTATA . . . . . G . G CA . . A . . CA T A T C T
blockSeqs : . . A A . C T C T G . . C C . . A . . . C A A C . ATGGACTATTCT . . C . G . . T G G TGG . AG . A G GCATGTATA . . . . . A . C CA . . A . . AG A G A C G
blockSeqs : C T . . . T T . . G . . . C G G T . TTTGACTATACT . . C . T . . T G G T . AA . A G GTATGTAAA . . . . . C . G T . . A . . CA A T G C .
blockSeqs : . . A G . . G . . . C A A C . TTTGACTATACT . . G . T . . A C T . CG . G A ATATGTAA . . . . . C . . . . . . . . . . G A .
blockSeqs : . A G . . T . . . C A A T . ATGGACTATAGT . . G . G . C T . TA . A T GTACT . . . . . C C
blockSeqs : . C C . . . . . . A A G T . GTAGACTATACT . . G . T . C T . CG . C A GTAT . . . .
blockSeqs : . . . T . . . . AGGGACTTTACT . . C . T . T . AA . G A A . . .
blockSeqs : . T . . . . GTAGACTATACT . . C . T . A
blockSeqs : . AT . . G
blockSeqCons : ** NTGGACTATACT***************************** G*** C*** GTATGTAA******************
originalCons : AACATAATTTCAAAATTGTTA---TAAAAANA----TTTAAAAA-GCCTTATTTTGGTTCAAAAA-NTTTCAAAGAAAAGATCTGTTTTAATATTGAAGAATGTTT--TAGTTGTGCTA----AC---AATC---TATT----ATCATAA-------TTATGCT--TTT---TCAGTTTCAGATTATATTCATTTAGTTATTGAAA-GAACCTTTGTAATCCACCCTGTACAACCGGTAATGAGAGACAATCGATGTGGCACCAC---CATGTACAATCATTCATGTGAGATAT----A-----T-----A-----T--A-------CT------AAGGGAAC-----------TCGA--CATCTGATTCATGGATTTCTGAT---GATGCGACTCATGGTGAGGAATATTCTGTATTGCTTGTAAAAGTTTTGACTGTAAGACATCAGATAGAAGCAGCAGCTATGTCATATGCAACAGATTACT-AATAAATTCTGTTTTGGGTGGGATCCTCCATGACCGATTGATCCTAAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGACTT-GGGCACCTGTTTGATTATATGATGGAGAGTTGATAATAAAAC---AAA------------------T--GTCA----CTAGT-AAGTGATAAATGCCCCGGAAGCGGTCTGTGAATGAAAATACAT----GT-----A-----A--------TT-GT-----GACTATTTTTAGGG--TTAATAA--AAAAACTTGACCTTGA-CNTAT-GAGCTACAGATCTTG-GTGCAACATGT-CATGATGTGATG---ATTATTTGTG--TGGTTATTTCGAAACCCCGCAATGAATNAAAACATTAAACAGGATACGAATAACACTTTCTTTATATACATGTATGTAT
finalCons : AACATAATTTCAAAATTGTTA---TAAAAANA----TTTAAAAA-GCCTTATTTTGGTTCAAAAA-NTTTCAAAGAAAAGATCTGTTTTAATATTGAAGAATGTTT--TAGTTGTGCTA----AC---AATC---TATT----ATCATAA-------TTATGCT--TTT---TCAGTTTCAGATTATATTCATTTAGTTATTGAAA-GAACCTTTGTAATCCACCCTGTACAACCGGTAATGAGAGACAATCGATGTGGCACCAC---CATGTACAATCATTCATGTGAGATATNTGGACTATACT-----------------------------AAGGGAAC-----------TCGA--CATCTGATTCATGGATTTCTGAT---GATGCGACTCATGGTGAGGAATATTCTGTATTGCTTGTAAAAGTTTTGACTGTAAGACATCAGATAGAAGCAGCAGCTATGTCATATGCAACAGATTACT-AATAAATTCTGTTTTGGGTGGGATCCTCCATGACCGATTGATCCTAAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGACTT-GGGCACCTGTTTGATTATATGG---AGAGTTGATAATAAAAC---AAA------------------T--GTCA----CTAGT-AAGTGATAAATGCCCCGGAAGCGGTCTGTGAATGAAAATACATGTATGTAA------------------TT-GT-----GACTATTTTTAGGG--TTAATAA--AAAAACTTGACCTTGA-CNTAT-GAGCTACAGATCTTG-GTGCAACATGT-CATGATGTGATG---ATTATTTGTG--TGGTTATTTCGAAACCCCGCAATGAATNAAAACATTAAACAGGATACGAATAACACTTTCTTTATATACATGTATGTAT
6 sequences could not be aligned to this reference sequence:
Unaligned ( gi|17 ): CAGTGTATTGTTGTTTTATTTGATCAAATTGCTGCATCTGAAAGCTCCATTATTAAGGAAAATCATGTGACCTTGCTTGACATTTATATGATATGCTCACTGTTGCACAAAAACAGTATTTTAAAATTGTTGTTATAAAAATATTTTTAAAGCCTTAGTT
Unaligned ( gi|18 ): TACACTCCAGTGTATTCTTGTTGTTTTAAGATGATTTTGCTTTAAGATAATGTTTTATTAAATTGTTGCATCTTTAAAATCTGTAATGAAAGAAAATCATTTGGCCTTTTATGATATGTTCATTGTTGTTATTTTCAATAATCATAATTTTA
Unaligned ( gi|19 ): TGCATGTCAATGTATTGTTGTTGTTTTTAAGATGATTTTGCTTTAAGATCGTGTTTTATTAAATTGCTGCAATTTTATGAACCGTTTTGAAGGAAAGTCACATGACCTTTTATGATATGCTCATTGTTGCTATTTTCAAAACATAATTA
Unaligned ( gi|20 ): TACACTCCAGTGTATTCTTGTTGTTTTTACTTTAAGATAATGTTTTATTGAATTGTTGCATCTTTAAAATCTGTAATGAAGGAAAATCATTTGGTCTTTTACGATATGCTCATTGTTGCTAATTTCAAAAAACATAATTT
Unaligned ( gi|23 ): AAGTCATGTGACCTTGCTTCGCTTTTATATGATATGCTCATTATGTTGTTATTTTCAAAGACATA
Unaligned ( gi|24 ): TTGTTGTTTTGAGGAGTTTTCTTTAAGATCATGTTTGATTTTATCAAATTGCTGCAT
Alignments
lowQualScore : 1111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 1 111 11111 1111 1111111 11 33333333333 111 2222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222 2222222222 111 2222 111111 222222222222222 11111 111 11
lowQualScore : 0 444 1 88888 1 88 1 1 77 2 0 0 77 9999 7777 1111 8888 4444444 6 00 777 0 0 3 1 1 5 1 666 555 99 6 3 11111111111 99 1 222 1 4 7777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777 6 77 5555555555 555 1 4444 333333 8888 11 4 0 3 2 0 1 666666666666666 00000 55 66 5 1 5 5 33 5 5 3 000 77 00 3 3 0 1 4 3
lowQualScore : . ... . ..... . .. . . .. . . . .. .... .... .... .... ....... . .. ... . . . . . . . ... ... .. . . ........... .. . ... . . ............................................................................................................................... . .. .......... ... . .... ...... .... .. . . . . . . ............... ..... .. .. . . . . .. . . . ... .. .. . . . . . .
lowQualScore : 6 000 0 00000 0 66 4 0 77 5 7 4 99 4444 1111 8888 5555 4444444 4 66 888 9 8 3 2 3 5 8 444 666 22 7 7 77777777777 22 0 777 4 0 0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 7 99 0000000000 777 7 6666 000000 5555 55 0 4 3 5 3 6 444444444444444 00000 55 11 0 0 7 9 99 7 7 1 000 99 11 3 3 1 0 0 0
consensus : AACATAATTTCAAAATTGTTA---TAAAAANA----TTTAAAAA-GCCTTATTTTGGTTCAAAAA-NTTTCAAAGAAAAGATCTGTTTTAATATTGAAGAATGTTT--TAGTTGTGCTA----AC---AATC---TATT----ATCATAA-------TTATGCT--TTT---TCAGTTTCAGATTATATTCATTTAGTTATTGAAA-GAACCTTTGTAATCCACCCTGTACAACCGGTAATGAGAGACAATCGATGTGGCACCAC---CATGTACAATCATTCATGTGAGATATA--T--GGACT-ATACTAAGGGAAC-----------TCGA--CATCTGATTCATGGATTTCTGAT---GATGCGACTCATGGTGAGGAATATTCTGTATTGCTTGTAAAAGTTTTGACTGTAAGACATCAGATAGAAGCAGCAGCTATGTCATATGCAACAGATTACT-AATAAATTCTGTTTTGGGTGGGATCCTCCATGACCGATTGATCCTAAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGACTT-GGGCACCTGTTTGA--T----------TAT---ATGGAGAGTTGATAATAAAAC---AAA---T--GTCA----CTAGT-AAGTGATAAATGCCCCGGAAGCGGTCTGTGAATGAAAATACATGT---AT---GT-A-A-TTGT-----GACTATTTTTAGGG--TTAATAA--AAAAACTTGACCTTGA-CNTAT-GAGCTACAGATCTTG-GTGCAACATGT-CATGATGTGATG---ATTATTTGTG--TGGTTATTTCGAAACCCCGCAATGAATNAAAACATTAAACAGGATACGAATAACACTTTCTTTATATACATGTATGTAT
Reference ( family-146 ) : AACATAATTTCAAAATTGTTA---TAAAAANA----TTTAAAAA-GCCTTATTTTGGTTCAAAAA-NTTTCAAAGAAAAGATCTGTTTTAATATTGAAGAATGTTT--TAGTTGTGCTA----AC---AATC---TATT----ATCATAA-------TTATGCT--TTT---TCAGTTTCAGATTATATTCATTTAGTTATTGAAA-GAACCTTTGTAATCCACCCTGTACAACCGGTAATGAGAGACAATCGATGTGGCACCAC---CATGTACAATCATTCATGTGAGATATN--T--GGACT-ATACTAAGGGAAC-----------TCGA--CATCTGATTCATGGATTTCTGAT---GATGCGACTCATGGTGAGGAATATTCTGTATTGCTTGTAAAAGTTTTGACTGTAAGACATCAGATAGAAGCAGCAGCTATGTCATATGCAACAGATTACT-AATAAATTCTGTTTTGGGTGGGATCCTCCATGACCGATTGATCCTAAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGACTT-GGGCACCTGTTTGA--T----------TAT---ATGGAGAGTTGATAATAAAAC---AAA---T--GTCA----CTAGT-AAGTGATAAATGCCCCGGAAGCGGTCTGTGAATGAAAATACATGT---AT---GT-A-A-TTGT-----GACTATTTTTAGGG--TTAATAA--AAAAACTTGACCTTGA-CNTAT-GAGCTACAGATCTTG-GTGCAACATGT-CATGATGTGATG---ATTATTTGTG--TGGTTATTTCGAAACCCCGCAATGAATNAAAACATTAAACAGGATACGAATAACACTTTCTTTATATACATGTATGTAT
gi|1 : AACATAATTTCAAAATTATTA---TGAAAATA----TTTAAAAC-GCATTATCTTGGTTAAAAAA-AT--CAAATAACAGATCTGTTTTAATATTAAAATATGTTT--TAGTTGTGCTA----AC---AATC---TATT----ATCATAA-------TTATACTA-TTT---TCAGTTTCAGATTATATTCATTAAGTTATTGAAA-GAACCTTTGTAATCCACCCTGTACAACCGGTAACGAGAGACAATCAATGTGGCACCAC---CATGTACAATCATTCTTGT---ATATA--T--GGA--------------AC-----------TCGA--CATCTGATTCGTGGACTTCTGAT---GGTGCGACTCATGGTGATGAATATTCTGTATTGCTTGTAAAAGTTTTGACTGTAAGACATCAGATAGAAGCAGCAGCTATGTCATATGCAATAGATAACT-AAACAATTCTGTTTTGGGTGGGATCTTCTATGACTGATTGAACCTGAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGACTT-GGGCACCTCGTTCA--T----------TATATAATGGAGAGTTGATGATAAAA----AAA---T--GTCA----CTAAT-AAGTGATAAATACCCAAGGAGCAGTGTGTAAATGAATAGACAT---------------A-TTGC-----GACTATCTTTAGAG--TAAATAA--AACAACTTGACCTTGA-CGTAT-GAGCTACAGGTCTTG-GTGCAACATGT-CATGAAGTGATG---ATTATTTGTG--TGGTTATTTCAAATCCCCACACTGAATTAAAACATTAAACAGGATACAAATAACATTTTCTTTATATTCATGTGTGTAT
gi|10 : TA----AA---AAAT---TATT----AGCATAA-------TTATCCT--TTTTTTTCAGTTTCAGATTGTATTCATTTAGTTATCAAAA-GAACCTTTGTAATCCACCCTGTACAACTGGCAATGAGAGACAATCTATGTGGTACCAC---CATGTACAATCAGTCATGTGAGATATA--T--GGACT-ATTCTAAGTGAAC-----------TTGA--CATCTTATTCATGGATTTCTGAC---GATGCAACTCATGGTGAGGAATATTCTGTATTGCTTGTTAAAGTTTTGACTGTAGCACATCATATAGAAGCAGCAGTTATATCATATGCAA
gi|11 : aatAACATAATTTCAAAACTGTTGCTCTAAATCTA----TTTAACAA-GCCTTATTTT-GTTAAAAAAGAATTCAAAGAAAATATCTATTTTAATATTGAAGAATGTTT--t
gi|12 : ttacacttcagtgtattgttgttgtttttaagattttgctttaagatcatgttttattttatcaactttccgcatcttcaaattcctttattaaggaaaatcatgtgaccttgcttgacttttatatggtatgctcattgctgctattttcaaaAAA-AAACCTTTGTAATCCACCCTGTACAACATGTAATAGGAGACA---------------C---CATGTACAATTGTTCATGCAAACTATT--T--TGACT-ATACTTGGGGAACTGTGCCACATTTTGATTCATTTGATTCATAGATTGCTGATTAAAATACATCACATGGTAAGGAATATTGTGTTCTGTTTGTAAAAGTTTTGACTGCAAGACATCAGATAGAAGCAGCAGTCATGTCATACGCAACCGAATAAC-AATACATTTTacg
gi|13 : AAA-GAACCTTTGTAATCCACCCTGTACAACATGTAATAGGAGACA---------------C---CATGTACAATTGTTCATGCAAACTATT--T--TGACT-ATACTTAGGGAACTGTGCCACATTTTGATTCATTTGATTCATAGATTGCTGATTAAAATACATCACATGGTAAGGAATATTGTGTTCTGTTTGTAAAAGTTTTGACTGCAGGACATCAGATAGAAGCAGCAGTCATGTCATACGCAACCGAATAAC-AATACATT
gi|14 : ACATAATT-CAAAATTGTTA---TAAAAACAAAAA---AAAAA-GTTTTATTTTGGTTCAGAAA-TTTTCAAAGAGAATATCTTCTTTAACATTGAAAAATGTTT--CAGTTGTGCTA----AC---AATC---TACT----A
gi|15 : ttacactttagtgtattgttgtttttaagatcatgttttattttatcgaattgttgcatctttaggaaaatcatgtgacctttcttgTAATAAATGCCCCGGAAGCAATCTGTGTATGAAAATACATGT---AT---GTAA-A-TTGT-----GACTATTTTGAAGG--TTAANNN--NNNNNNNNNNNNNNNN-NNNNN-NNNNNNNNNNNNNNN-NNNNNNNNNNN-NNNNNNNNNNNN---NNNNNNNNNN--NNNNNNNNNNNNNNNNNNNNGATTGATAAAAGCATTAAACAGGATACAAATAATATTTT-----TGTACATGTATGTATgaaattaaaaactatataattatgtt
gi|16 : TAACACAAG---AAA---T--GTCAAAGGTTATTTAAGTAATAAATACCCTAAAAGTGGTCTGTCATTGTAA--AGGTGT---AC----T-----TTAT-----GATTATATTTTGGATTTTAACAA--AAAAGTT--ACCTTGATCTTCT-TACCTGT--ATCTTGCATATAATCTGTCCATCTTGTGATGTTTATCATTTGTGACAAATCATTTTTAAACCCCTC-ATGAACAA
gi|2 : gtgaacAACATAATTTCAAAATTATTA---TGAAAAGA----TTTAAAAC-GCCTTATTTTGATTTAAAGA-AATTCAAAGAAAAGATCTGTTATAATATTAAAGAATGTTT--TAATTGTGCTA----AC---AATC---TATT----ATCATAA-------TTATACT--TT-----------CAGATTATATTCATTTAGTTATTGAAA-GAACCTTTGTAATCCACCCTGTACATCCGTTAACGAGAGACAATCAATGTGGCACCAC---CATGTACAATCATTCTAGTGAGATATA--T--GGA--------------AC-----------TCGA--CATCTGATTCGTGGCTTTCTGAT---GGTGCGACTCATGGTGAGGAATATTCTGTATTGCTTTTAAA-GTTTTGATTGTAAGACATCAGATAAAAGCAGCAGCTATGTCATATGCAATATATAACT-AAACAATTCTGTTTTGGGTGGGATCTTCCATGACCGACTGATCCTAAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTT-GGGCACCTAGTTAATTT----------TATA--ATGGAGAGTTGATGATAAAACAAAAAA---T--GTCA----CTTAT-AATTGTTAAATACCTAAGAAGCAGTGTGTAAATGAAAATACAT---------------A-TTGC-----GACTA-TTTTAGAG--TTAATAA--AACACCTTGACATTGA-CGTAT-GAGTTACAGATCTTG-GTGAAACATGT-CATGAAGTGATG---ATTATTTGTG--TGGTTATTTCAAATCTCCACACCGAATTAAAACATTAAACAGGATACAAATAACATGTTCTTTATctaagttag
gi|21 : AAGATCTATTTTAATATTGAAGAAAGTTTAATAATC-TACTAGAAAAT---AATTATTTGTT----ATCATAA-------TTATGATATTTT---TCAGTTGCAGGTTATATTTATTAAGTTATTAAAA-TAACCTTTGTAGTCCACCCT
gi|22 : ---AAA---T--GTCA----CCAGT-AAGTGACAAAT-----------GGCCTGTGATTGTAAAGAT-TGTAAAAC---GT-G-CTTTGT-----GACTATATTTGGAA--TTTCTAAAGAAAAATGTAACCTTGA-CATA
gi|25 : ataaccagAGAACATTAAACAGGATACAATTTACACTTTCTGTATATACATGTATATAT
gi|26 : AATAAAAGCATTAAACAGTATACGAATAACA-TTTTTTTACATATATGg
gi|27 : tAAG---AAA---T--GTCA----CTAGT-AAGTGACAAATGTCCCAGGTGTGATCTGTG
gi|3 : TTTGGTTCAAAAC-TTTTCAAA-AAAAGATCTGTTTAAATATTGAAAAATGTTT--TAATTGTAC-A----ACTAGAATT---TTTTTTTTATCATAA-------TTATACT--TTT---CCAGTTTTAGGTTATATTCATTTAGTTACTGAAA-GAACCTTTATTATCCACCCTGTACAACCGGTTATGAGAGACAATCAATGTGGTACCAC---CATGTACAATCATTCATGTGAAATATA--T--GGACT-ATAGTAAGGGAAC-----------TCGA--CATCTAATTCATGGATTTCTGAT---GATGCGACTCATGGTGAGAAATATTCTTTATTGCTTGTAAAAGTTTTGAATGTAAAGCATCAGATAGAAGCAGCAGCTATGTCATATGCAATAGATTACT-AATAAATTTTGTTTTGGGTGGGATCCTCCATGACTGATTGATTCTAAG
gi|3 : TGA--T----------GAT---ATGTAGAGTTGATAGTGAAAC---AGAAAGT--GTTG----CTAAT-AGGTGATAAATGCCCCAGAAGCAGTCTGTGAATGAAAATACATGT---AT---GT-ATA-TTCT-----GACTGTTTTCAGGG--TTAATAA--ATAAACTTGACTTTGA-CCTAT-GA---ACAGATCTTT-GTGTAACAGGT-CATG-TTTGATG---ATTATTTATA--TGGTTATCTAGGAATCTTGCAATGAATGAAAACATTAAACAGGATATGAATAACACTTCCTGCATATACATGTATATATattacttgtgtctcaccactgaggcctggtnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnagagtatcagaatttactgatgatatgtagagttgatagtgaaacagaaagtgttgctaataggtgataaatgccccagaagcagtctgtgaatgaaaatacatgtatgtatattctgactgttttcagggttaataaataaacttgactttgacctatgaacagatctttgtgtaacaggtcatgtttgatgattatttatatggttatctaggaatcttgcaatgaatgaaaacattaaacaggatatgaataacacttcctgcatatacatgtatatatgta
gi|4 : tttggttcaaaacttttcaaaaaaagatctgtttaaatattgaaaaatgttttaattgtacaactagaattttttttttatcataattatacttttccagttttaggttatattcatttagttactgaaagaacctttattatccaccctgtacaaccggttatgagagacaatcaatgtggtaccaccatgtacaatcattcatgtgaaatatatggactatagtaagggaactcgacatctaattcatggatttctgatgatgcgactcatggtgagaaatattctttattgcttgtaaaagttttgaatgtaaagcatcagatagaagcagcagctatgtcatatgcaatagattactaataaattttgttttgggtgggatcctccatgactgattgattctaagattacttgtgtctcaccactgaggcctggtnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnagagtatcagaatttacTA----AA---AATG---TATT----ATCGTAA-------TTATGCT--TTT---CCAG------ATTATTTTTAGTTAGTTGTTGAAA-GAACTTTTGTAATCCACCCTGTACAACCAGTAATGAGAGACAATCAGTGTGTCACCAC---CATGTACAATCATTCATGTGAGATATACAT--GGACTTATTCAAAGGGAAC-----------TAGA--CATGTGATTCATAGATTTGTTAC---GATGCAACTCATGGTAAGAAATATTCTTTATTGCTTGTAAAAGTTTTGACTGTAAGACATCAGATAGAAGCAGCAGCTATGTCATATGCAACAGATTACT-AATAAAGTCTATTTTCTGTGGAATTCTCCATGACCAATTGATCTTAAGgta
gi|4 : ctaacagtctactagaaatACTT-GGGCACCTGTTTGA--T----------CAT---ATGGAGAGTTGATAATAAAAC---AAAA--TAGGTCA----CTCGT-AAGTGATAAATACCCTGGAAGCTGTCTGTAGATGAAAATA--TGT---ATTTTGT-A-AATTGT-----TACTATTATTA-----------A--AAACACATGACCTTGA-GCTACAGACCTG--GATCTTG-GTGCAACACGT-TGTGATGTGATG---ATTATTTGTG--TAGTTATATCAAAACCCCTTAATGAATAAAAACATTAGACATGTTATGAATACCACTTTCatcagatgtctctaaccacttaggtnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntgaattacttgggcacctgtttgatcatatggagagttgataataaaacaaaataggtcactcgtaagtgataaataccctggaagctgtctgtagatgaaaatatgtattttgtaaattgttactattattaaaaacacatgaccttgagctacagacctggatcttggtgcaacacgttgtgatgtgatgattatttgtgtagttatatcaaaaccccttaatgaataaaaacattagacatgttatgaataccactttc
gi|5 : ctaacagtctactagaaattaaaaatgtattatcgtaattatgcttttccagattatttttagttagttgttgaaagaacttttgtaatccaccctgtacaaccagtaatgagagacaatcagtgtgtcaccaccatgtacaatcattcatgtgagatatacatggacttattcaaagggaactagacatgtgattcatagatttgttacgatgcaactcatggtaagaaatattctttattgcttgtaaaagttttgactgtaagacatcagatagaagcagcagctatgtcatatgcaacagattactaataaagtctattttctgtggaattctccatgaccaattgatcttaagatcagatgtctctaaccacttaggtnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntgaattGTTTCAGATTATACTTATTTAGTTATTGAAA-GAAACTTTGTAATCAACCCTGTACAACCGGTAATGAGAAACAGTTGATGTGGTACCACATCTGTCTGCAATCATTCATGTGAGATATG--T--AGACT-ATACTAAGGGAAC-----------TCAA--TATGTGATTCACGGATTTCTGAT---GATGTGACTAATGGTTAGGAATATTCTGTATTGTTTGTAAAAGTTTTGACTGTTACACATCAGATAGAAGCAGCAGCTATGCCATATGCAACAGATTACC-AATAAATTCTATTTTGGGAGGGATTCTCCATGTCCGATCAATCCT
gi|5 : ACTTCGGGCATCTGTTTGA--TGAATGTTGATTAT---AAAACAAACTAAAAATGTCACCA-AAA---T--GTCA----CTTAT-AAGTGATAAATGCCTCATAAGCAGTCTGTGAATGAAAATACATAT---AT---GT-A-A-CTATATTTCGACTAATTTT-GGG--TTAATAA--AAAAACTTGACCTTTA-CCTTT-GAGTTACAGATCTTA-GTGCAACATAT-CATGATGTGATG---ATTATTTGTG--TAGTTATTT--------CGCAATGAATCAAAACATAAAATTGAATACtcaaatttcttgtctctcaccgctgaggttgggtnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnttacttcgggcatctgtttgatgaatgttgattataaaacaaactaaaaatgtcaccaaaatgtcacttataagtgataaatgcctcataagcagtctgtgaatgaaaatacatatatgtaactatatttcgactaattttgggttaataaaaaaacttgacctttacctttgagttacagatcttagtgcaacatatcatgatgtgatgattatttgtgtagttatttcgcaatgaatcaaaacataaaattgaatacctata
gi|6 : gtttcagattatacttatttagttattgaaagaaactttgtaatcaaccctgtacaaccggtaatgagaaacagttgatgtggtaccacatctgtctgcaatcattcatgtgagatatgtagactatactaagggaactcaatatgtgattcacggatttctgatgatgtgactaatggttaggaatattctgtattgtttgtaaaagttttgactgttacacatcagatagaagcagcagctatgccatatgcaacagattaccaataaattctattttgggagggattctccatgtccgatcaatccttcaaatttcttgtctctcaccgctgaggttgggtnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnttCTA----AA---AATG---TATT----ATCATAA-------TTATGCT--TTT---CCA-TTTCGGATTATATTTAGTTAGTTATTGAAA-GAACCTTTGTAATCCACCCTATACAACAAGTAATGAGAGACAATCAATGTGTCACCAC---CATGTACAATCATTCATTTGAGATATA--TATGTACTTATTGTAAGGGAAC-----------TAGA--CATGTGATTCATAGATTTCTTAT---GATGTGACTCGTGGTAAGGAATATTCTTTATTGCTTGTAAAAGTTTTGACTGTAAGATATCAGATAGAAGCAGCAGCTATGTCATATACAACAGATTAGC-AATAAGTTGTATTTTGTGTGGAATTCTCTATGACGAACTGATCTTAAGctata
gi|6 : actagaa-GGGCACCTGTTTGA--T----------TAT---ATGAAGAGTTGATAATTAAACA--AAA---TGGGTCA----CTCGT-AAGTGGTatcacttaggtnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnagtaccccactctgaatttacaagggcacctgtttgattatatgaagagttgataattaaacaaaatgggtcactcgtaagtggt
gi|7 : actagaactaaaaatgtattatcataattatgcttttccatttcggattatatttagttagttattgaaagaacctttgtaatccaccctatacaacaagtaatgagagacaatcaatgtgtcaccaccatgtacaatcattcatttgagatatatatgtacttattgtaagggaactagacatgtgattcatagatttcttatgatgtgactcgtggtaaggaatattctttattgcttgtaaaagttttgactgtaagatatcagatagaagcagcagctatgtcatatacaacagattagcaataagttgtattttgtgtggaattctctatgacgaactgatcttaagatcacttaggtnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnagtaccccactctgaatttacaa---AAT----TGTT----GTTATAAAATTTTTTTATTTT--TTT---TCAGTATCAGATTATATTCATTTAGTTATTGAAAAGAACCTTTGTAATCCACCCTGTACAACTGGTAATGAGAGACAATCAATGTGGTACCAT---CGTGTACAATCATTCATGTGAGATATA--G--GGACT-TTACTAAGATAAC-----------TCAA--CACCTGGTTCATGGAATTCTGAT---GATGCGACTCATGGTGAGGAAAATTCTTTATTGCTTGTAAAAGTTTTGACTGTAAGACATCAGATAGAAGCAGCAGGTATGTCATATGCAATAGATTACTAAACAAA-TCTGTTTTGGGTGGGATCCTCCATGATCGATT
gi|8 : ttacgcttagtttattgttgttgtttttaggagtttgcttaaaggtgaagttttattttatcaaattcctgcagttttaaattattttaaagaaaataatgtgaccttgcttgacttttatatgatttgcgcattgttgcaatttacaaaaacataatttcaaCATTCATGTGAGATATA--TATGGACT-TTTCTAAGGGAAC-----------TTGA--CATCTAATTCATGAATTTCTGAT---GAT--------TAGAAAGGAATATTCTTTATTGC
gi|8 : GCAGCTTTATCCTATACAATAGATTACT-AGTAAATTCTATTATGAGCGGGGTCCTCCATGACCAATTGATCCTAAGagctttatcctatacaatagattactagtaaattctattatgagcggggtcctccatgaccaattgatcctaagattacttttctctcaccgctgagctcggatggacaattattctgctccaccaataaagcagggtgcagtataacatattatgcgtaacagtgttaaaccacacttaaactttaattaggcacttgtttgattatatgtggagttgataataaaactaaaaatgtcactaataagtgataaatgcccccgaagcaatctgtgtatgaaaatacatgcatgtatattgtggctattttgagggtttataataaatgccccggaagcaatctgtgtatgaaaatacatgtatgtaaattgtgactattttgaaggtta
gi|8 : cattcatgtgagatatatatggacttttctaagggaacttgacatctaattcatgaatttctgatgattagaaaggaatattctttattTT-AGGCACTTGTTTGA--T----------TAT---ATGTGGAGTTGATAATAAAACTAAAAA---T--GTCA----CTAAT-AAGTGATAAATGCCCCCGAAGCAATCTGTGTATGAAAATACATGC---AT---GT-ATA-TTGT-----GGCTATTTTGAGGG--TTTATAA--TAAAattacttttctctcaccgctgagctcggatggacaattattctgctccaccaataaagcagggtgcagtataacatattatgcgtaacagtgttaaaccacacttaaactttaattaggcacttgtttgattatatgtggagttgataataaaactaaaaatgtcactaataagtgataaatgcccccgaagcaatctgtgtatgaaaatacatgcatgtatattgtggctattttgagggtttataataaatgccccggaagcaatctgtgtatgaaaatacatgtatgtaaattgtgactattttgaaggtta
gi|8 : cattcatgtgagatatatatggacttttctaagggaacttgacatctaattcatgaatttctgatgattagaaaggaatattctttattgcagctttatcctatacaatagattactagtaaattctattatgagcggggtcctccatgaccaattgatcctaagattacttttctctcaccgctgagctcggatggacaattattctgctccaccaataaagcagggtgcagtataacatattatgcgtaacagtgttaaaccacacttaaactttaaTAATAAATGCCCCGGAAGCAATCTGTGTATGAAAATACATGT---AT---GTAA-A-TTGT-----GACTATTTTGAAGG--TTAtgccccggaagcaatctgtgtatgaaaatacatgtatgtaaattgtgactattttgaaggtta
gi|9 : cattcatgtgagatatatatggacttttctaagggaacttgacatctaattcatgaatttctgatgattagaaaggaatattctttattgcagctttatcctatacaatagattactagtaaattctattatgagcggggtcctccatgaccaattgatcctaagattacttttctctcaccgctgagctcggatggacaattattctgctccaccaataaagcagggtgcagtataacatattatgcgtaacagtgttaaaccacacttaaactttaattaggcacttgtttgattatatgtggagttgataataaaactaaaaatgtcactaataagtgataaatgcccccgaagcaatctgtgtatgaaaatacatgcatgtatattgtggctattttgagggtttaACATAATT-CAAAATTGTTA---AAAAAAAA----ACAAAAAAAGCTTTATTTTGGTTCAGAAA-TTTTCAAAGAAAATATGTACTTTAATATTGAAGAATGTTT--CAGTTGTGCTA----AC---AATC---TACT----A--GAAA-------TTAA------TT---TAAAATAGAGATAATACTTATTTAGTTATTGAAA-GAACCTTTGTAATCCACCCTGTACAACTGGTAATGAGAAACAATTGATGTGGTACCAC---CATCTGCAATCATTCATGTGAGATATG--T--AGACT-ATACTAAGGGAAC-----------TCAA--TATGTGATTCAAGGAT
6 sequences could not be aligned to this reference sequence:
Unaligned ( gi|17 ): CAGTGTATTGTTGTTTTATTTGATCAAATTGCTGCATCTGAAAGCTCCATTATTAAGGAAAATCATGTGACCTTGCTTGACATTTATATGATATGCTCACTGTTGCACAAAAACAGTATTTTAAAATTGTTGTTATAAAAATATTTTTAAAGCCTTAGTT
Unaligned ( gi|18 ): TACACTCCAGTGTATTCTTGTTGTTTTAAGATGATTTTGCTTTAAGATAATGTTTTATTAAATTGTTGCATCTTTAAAATCTGTAATGAAAGAAAATCATTTGGCCTTTTATGATATGTTCATTGTTGTTATTTTCAATAATCATAATTTTA
Unaligned ( gi|19 ): TGCATGTCAATGTATTGTTGTTGTTTTTAAGATGATTTTGCTTTAAGATCGTGTTTTATTAAATTGCTGCAATTTTATGAACCGTTTTGAAGGAAAGTCACATGACCTTTTATGATATGCTCATTGTTGCTATTTTCAAAACATAATTA
Unaligned ( gi|20 ): TACACTCCAGTGTATTCTTGTTGTTTTTACTTTAAGATAATGTTTTATTGAATTGTTGCATCTTTAAAATCTGTAATGAAGGAAAATCATTTGGTCTTTTACGATATGCTCATTGTTGCTAATTTCAAAAAACATAATTT
Unaligned ( gi|23 ): AAGTCATGTGACCTTGCTTCGCTTTTATATGATATGCTCATTATGTTGTTATTTTCAAAGACATA
Unaligned ( gi|24 ): TTGTTGTTTTGAGGAGTTTTCTTTAAGATCATGTTTGATTTTATCAAATTGCTGCAT