lowQualScore : 22222222222222222222222 1111111111111111111111 1111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 111111111111111111111111111111111111111 11111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 2222 333333333333333333 222222222 11 22222222222 888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888 3333333 11 555555555555555 333 22222222 00000000000000000000000 1 1 1 1 11 1 11111 11 1 1 22222 1 1 22222 1 2 2222 7777777 1 4444 1111111111111111111111 2222 33333 111 1111 111 22222222 22222222222222222 11 1111111 2222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222 1111 22222 4444444444444444444444444 111111 1111 99999999999999999999999999999999999999999999999999999999999999999999999999999999999999 111111111 33333333333333333333333333333333333 1111 1111 1 33333333 11111 77777777777777777777777777777777 111111111111111111 11111111 11 2222222 11111 11 11 6666666666666666 2222222 22222222222222222222 1111111111 111111 22222222222222222222222 22222222 1 111 1 111 000000000000000000000000000000000000000 111111 5555555555555555555 11111 1111 11 11 111 111 2222222 22222222 8888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888 111 222 222222 1111111 1111111 1 88888888888888888888888888888888888888888888888888888888888888888888888888888888888888888 1111 222222222222222 111111111111111 111 333333333333333333333333333333333333 111111111 888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888 22222222222222222222222222222222 222222222 333333333333333333 22222222 1 11111 4444444444 222222222 1111111 111111111111 33333333333 111111 222222222 11111111111 1111111 111 1111 99999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999 111 222 2222 111 3333333333333333333333 11 33333333333333333333 111111 22222222222222222222222222222 11 111111111 22222222 1 11 11 4444444444444444444444444444444444 222222222222 22222222222 444444444444444444444444444444444444444444 11 444 222 2 2 1 11 333 1 5555555 77777777777777777777777777777777777777777777777777777777777777777777 2 33 111 33333 66666666666 1 111 8888888888888888888888888888888 11111111111111 1 2
lowQualScore : 1111 000000000000000000 555555555 11 5 7 5 3 99999999999 5 888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888 2 8888888 2 4 6 222 7 88 777777777777777 6 4 555 88888888 4 00000000000000000000000 7 4 4 5 5 5 22 2 7 33333 6 77 6 7 3 2 4 88888 5 5 66666 5 0 6 9999 1111111 5 2222 2 3333333333333333333333 1111 1 22222 111 6666 777 2 22222222 3 99999999999999999 77 00 5 888 8888888 1 0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 777 2222 666 1 55 3 22222 555 1 2 0 0000000000000000000000000 111111 33 666666 777777 444 2 66666 33 3 1111 3 1 33333333333333333333333333333333333333333333333333333333333333333333333333333333333333 1 22 666 222 222 22 333333333 222 666666666666 8888888888888888 333 11 222 5555 11 88888888888888888888888888888888888 55 8888 2 1111 1 6 22222222 77777 2 11111111111111111111111111111111 0 9 66 444 000000000000000000 777777 2 66 999 4 3 44444444 5 33 88888 0000000 88888 11 3 6 22 7777777777777777 9 0000000 2 555 55555555555555555555 555 2 55 4 444 8888888888 66 666666 8888 33333333333333333333333 5 3 00000000 1 33 4 000 1 000 000000000000000000000000000000000000000 1 666666 4444444444444444444 3 99999 4 44 3 22222 2222 22 11 666 444 5555555 5 3 55 22222222 2 4444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444 3 666 888 555 000000 7 8888888 3333333 99999 0 55555555555555555555555555555555555555555555555555555555555555555555555555555555555555555 2222 22 222 000000000000000 888888888888 66666 666666 1 222 666666666666666 1 3 6666 000 2 1 222222222222222222222222222222222222 000000000 666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666 444 2 2 4 33 33333333333333333333333333333333 7777777 2 333 333 333 333 2 22 4444 333 2 55555 000000000 333333333333333333 9999 8888 77777777 5 8 0 8 8 1 88888 3 2 6666666666 66 5 111111111 2 4 0 7777 444 0 8888888 2 444444444444 5 55555555555 777777 666666 666 777777777 3 8 22222222222 0 2 4444444 555 4 4 4444 33333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333 33 555555 22 333 000 77 222 99 7777 222 1 8 3 9999999999999999999999 6 2 4 3 33 33333333333333333333 99 444444 99999999999999999999999999999 444 2 2 999 22 888888888 5 5 2 44444444 1 2 3 11 99 2 9999999999999999999999999999999999 666666666666 22222222222 9 5 555 111111111111111111111111111111111111111111 33 0 999 1 77 6 6 66 0 3 0 8 666 6 888 6 3 0 6 88 6 888 7 9999999 2 4 88888888888888888888888888888888888888888888888888888888888888888888 4 0 77 00 2 777 6 44444 00000000000 0 999 1 5 666 3 99999 6666666666666666666666666666666 66666666666666 22 555 44 5 66 0 3 7
lowQualScore : .... .................. ......... .. . . . . ........... . ...................................................................................................... . ....... . . . ... . .. ............... . . ... ........ . ....................... . . . . . . .. . . ..... . .. . . . . . ..... . . ..... . . . .... ....... . .... . ...................... .... . ..... ... .... ... . ........ . ................. .. .. . ... ....... . .............................................................................................. ... .... ... . .. . ..... ... . . . ......................... ...... .. ...... ...... ... . ..... .. . .... . . ...................................................................................... . .. ... ... ... .. ......... ... ............ ................ ... .. ... .... .. ................................... .. .... . .... . . ........ ..... . ................................ . . .. ... .................. ...... . .. ... . . ........ . .. ..... ....... ..... .. . . .. ................ . ....... . ... .................... ... . .. . ... .......... .. ...... .... ....................... . . ........ . .. . ... . ... ....................................... . ...... ................... . ..... . .. . ..... .... .. .. ... ... ....... . . .. ........ . .......................................................................................................................................................... . ... ... ... ...... . ....... ....... ..... . ......................................................................................... .... .. ... ............... ............ ..... ...... . ... ............... . . .... ... . . .................................... ......... ................................................................................................ ... . . . .. ................................ ....... . ... ... ... ... . .. .... ... . ..... ......... .................. .... .... ........ . . . . . . ..... . . .......... .. . ......... . . . .... ... . ....... . ............ . ........... ...... ...... ... ......... . . ........... . . ....... ... . . .... .............................................................................................................. .. ...... .. ... ... .. ... .. .... ... . . . ...................... . . . . .. .................... .. ...... ............................. ... . . ... .. ......... . . . ........ . . . .. .. . .................................. ............ ........... . . ... .......................................... .. . ... . .. . . .. . . . . ... . ... . . . . .. . ... . ....... . . .................................................................... . . .. .. . ... . ..... ........... . ... . . ... . ..... ............................... .............. .. ... .. . .. . . .
lowQualScore : 0000 999999999999999999 555555555 22 0 8 0 6 88888888888 9 333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333 5 2222222 2 0 0 777 3 33 000000000000000 0 0 000 55555555 0 00000000000000000000000 0 0 0 0 5 0 00 5 0 00000 0 55 7 3 3 0 0 33333 0 0 55555 0 0 0 5555 5555555 5 5555 5 7777777777777777777777 7777 0 00000 777 7777 555 0 00000000 2 66666666666666666 77 88 7 000 2222222 1 3333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333 888 5555 444 4 00 1 88888 888 5 3 4 6666666666666666666666666 333333 77 333333 777777 777 6 55555 33 6 4444 6 2 00000000000000000000000000000000000000000000000000000000000000000000000000000000000000 8 44 222 666 666 00 777777777 333 888888888888 8888888888888888 777 88 333 2222 99 77777777777777777777777777777777777 55 1111 6 4444 4 0 44444444 11111 3 00000000000000000000000000000000 9 2 22 444 111111111111111111 222222 5 88 666 8 3 55555555 0 11 11111 2222222 66666 44 2 0 00 5555555555555555 4 8888888 5 888 00000000000000000000 444 1 66 7 777 9999999999 55 000000 5555 77777777777777777777777 0 8 77777777 4 99 4 000 4 222 888888888888888888888888888888888888888 4 333333 5555555555555555555 9 99999 8 55 4 77777 8888 66 00 444 000 0000000 8 0 88 00000000 2 2222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222 6 444 888 111 111111 6 5555555 3333333 99999 3 55555555555555555555555555555555555555555555555555555555555555555555555555555555555555555 8888 33 999 111111111111111 222222222222 00000 555555 5 777 000000000000000 0 5 2222 222 5 9 888888888888888888888888888888888888 999999999 888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888 444 4 4 9 11 22222222222222222222222222222222 9999999 0 333 555 555 555 0 88 2222 333 7 33333 444444444 999999999999999999 2222 7777 77777777 0 0 6 0 0 0 22222 2 0 9999999999 99 0 777777777 3 4 6 3333 444 3 3333333 9 666666666666 4 99999999999 222222 000000 444 333333333 9 9 11111111111 2 2 4444444 666 4 4 2222 99999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999 33 888888 88 999 000 33 777 22 0000 666 0 0 2 8888888888888888888888 7 5 0 0 66 88888888888888888888 22 111111 44444444444444444444444444444 777 7 7 333 22 888888888 7 2 8 88888888 8 5 2 22 00 5 7777777777777777777777777777777777 111111111111 11111111111 4 0 888 111111111111111111111111111111111111111111 99 3 222 3 99 7 7 77 3 2 8 3 000 7 777 7 0 0 0 00 0 000 0 0000000 5 0 00000000000000000000000000000000000000000000000000000000000000000000 0 0 00 00 5 555 0 55555 88888888888 0 888 8 6 444 6 11111 0000000000000000000000000000000 11111111111111 44 444 22 0 44 0 7 5
consensus : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTCTGGNACATGGTTGACTTC-TAG------G-T-TGACTTCTA-----GGTTG-A-TTTCTGGGACATGGTTGA-CTTCTGGA---ACATGGTTGACTTCTGGNACAT-----G------TT-T----N-CT-------T----CTGGGTCGAC-------TT-CT-GGNACATG--------GCNGACTTCTGGAT--AT--GCATTAGTTGATTTCT------GGGTCGACTTCNGGGAAATGGTTGACTTCCGAATTGACTTCTGGAATATATT--TGACTTTGAATTCTTTGATGCCGTATANAATATACAGTTAAGTTTTTGAACACACTGTTAAGACCANTTAAAACTACATA--------TCAGGAAAATACCAGNATNCTGTTTAGAGTTGTTGTTTTGCTACTATGTTAGTGTCGGTANAATAACGCCAATNGGTATGTTTGCAATCTCATGTAGAGAGGCTAGAACAATTTAATTACGAAGATAAATA-TATCAGGAAGAATNGT-A--GACATTGTGTAACAGAAAGCACAACATTTTGATTGACACTCTTGNCGAGATCAAAATGAGATTAACCTACCTATTATCNAAGTCTCGGCTACCCCATCT-CAC-----GC-TTAT---CAACATNTGGATGAT----NTCTAGTCCAGCA-CCGATTCT---TCATCATCA---TCCATTACACATCTTCA---T--C-ACCTGGT-TTATC-TCNATCTTC-AGTNTCATCGG-----CGTCATC--C----AT--AA-C-----ATCACT-TGAT--A--CTT-----------C-CA-----ACA-CCAAC-T--AT-CATC-AC--T----T-TTCCA---TCATCAT--CNTTA---TGAT--CAACACTNTTATCAT---CATCATCATC--A----A--------TCA-TCT--AT------CA--TCAG---C--AT------CAT---CTGC---AGTTTC-ATTG----AC-ACCATC-T---TAACA-TG-C-CCG-ATACCTTCT-T-TTCA-T-T-A-CA------------ATCAT---------CATCNT-T-------ATC-A--CCA--NCA---T---CAT--CATCA-C--CGT-NAT---C------------ATCAT----------------CA---T--C---ATC----AT--CAGCAGC---A--------------AACA---CC-TT-AT--GTC--CA---GTANT----ACCT-CCATC--TNTAG-TCCAT-TGA-CACCATC--CT-AGCAT-TA-A--A----C-AATATCTCATCATCATTACCATC---ATCAT--------C---------A------T-CAGCAGCAGC---AGCA-TA--T---A-TATC-TTG-AT-CCGTCCAG------TATTATCTC---CATCTCGAGTTCCATTGACACC-NTCT--ACAGTAC-TGAT-CAACATTAT--C--C-TTATCATC---ATC--------------------AT---TATGATCA-TCANCATCATC---ATCACC-------GTN-ATCAT-C-T-CAT----CC--GTC--C-----AG----TG--T-TATNTC--------CAT-CTCGAGTCTCAT---TGG-CGCCATCC-TAACATTACC-TT-TC-C--ACTTCAT--------------CCC---TACCATCATTAT---CATC-AC----------------CANCATNA---TCANTGCAATCATCATCATCATCANTATACATCTT--CATC-TGTC--CAGTATT---ATCTCCATCTCN--AGTNTCATTGNCACCAT--T-C--CAGCATNACCTTATG--ACCACTTTATNCTTAC--T---------CAT-------C-----ATTCTCATCAC----------------C----A---ACA-TCA--TCACTA-CA--AT------CATC------A----T---CAT------------CAGC-AGC---ATG-CATCTTCAT--CCGTC-----CANTATTATNT-C---CATCTCCAG--TCCCAT--TG-ACACCATCCTA----ACATNACCA--N--AT-ACCA-NCTTAT---T-----C-TT--A-C-----C--ATCA------A--C----A--N-CC-TTAT-CACCAACATCAT--CATC---A-C--T-AC-A--A--TC------------AT-----CAT------C-ATC---AT---CAT--CAG----CAGCAGCAGCAGTA---GCAGN-AGCAGCATG-T--------ATC--TTTATGCGT-C--TAGT---ATTATC---T-C---CATC-T--CCAGTTTCATT----G---A-------C---AT---CATCC-T----A----A---CA-T----T-AC---CTG-------AT-ATC---ANCNT-C-A-TCATCAT--C--------------------------A--TCGT------CATCATCA---TCA---T---C---A-T--C----AT--CAGCAGC-----A----T-ATNTCTTCA---TC-CATTA--AGTATTATCTCCATCTCCA--GTC-CNATT--GACACCATCC-TAA-C-ATTAC--CTTATATCACC-TTA---ACTTACCATCATC-AT--CCNTATCACCAACATCATCAC---CAC--TAT--CATCATC-ATC------------ATCATCANCAGCAT-------CAGCA------GCAGCAGCAT-----ATATCTTC--AT-CNATC--CAGCATTATC-TC---CNTCTC-CAGTCTCATTG--AC-ACCATCC-TAA-C-ATC---ACCT--AT-ACCA-NCTT----------AT-A--CT-TA---------TCA-----------------AC---ATC-----ATCA--N-CA-------CTAT---AT--AN--TCATCA-TCATCATCAG------CA--GCAGCAG---CAGCAGCATTAT--ATATCTTCAT-C--CGTC--CAGTATTATNTCCATCTCGAGTCC-CATTNACAC-CAATTCT-AACATAACCTNAT-ACCACCNTNAAC--TTACCATC-T-TGTC--CG-T-------ATA-CCAA------CATCA------------------TC---------A---TC-A-TC---ATCATCAGCAGCAGCAGCAGCAGCA-T-----A-TA-TCTTCATC--CGTC--CAGTATTATNTCCATCTCGAGTCCC-ATTNACAC-CAA-TCTNAANTNACCTN-ATATCACT--CNATAC--TTA-CAAC--CATC---A---TCATTATCACCAACATC---ATCATCANC-G------TCATCAT----------------------CATC--AAC---AGCAGCAGCATA--TATC-TT-CA-TCCGTCCAGTATTAT--ATCCATCTCGAGTCC-CATTGACACCATCCTGGACATGACCGTATATCACTTTATACTTACCATCTGTATCCATAT-ACCNAGCATCCTCATNACNGT------GNNNNNNNNNNNNNNNNNNNNNNNNNACAACAACAACAGCAGCAGAAGATATCTT-AATCAGTCCAGTATNATCATCNNTCTGCAGTNCCANCTACACCGTNNNAACATAACCGTACACAATC-TT-ATAC--TCACCAAC---A-TC-----ATCA-C---------A-----CT---A--------ATCATCATCA--G----C------AGCAGCAG---C--AGCATATATATTCATNTATCCAGCATCA
Reference ( gi|1 ) : TGTTTCTGAGGACCGCATCTCCACGTACATGCGTAAAAATTGTTCTGAGATATGGTTGACCTT-TAA------G-T-CGACTTCTG-----TGTTT-A-CTTCTGGAACATGGTTGA-TTTCTGAA---ACATGGTTGACTTCTGGAACAT-----G------TT-T----T-TT-------T----CTGGATAGAC-------TT-CT-GG-ACATA--------GCAGACTTCTAGATAGAT--GCCTTAGTTGATTTCT------TGGTCGATTTCAGGGAAGTGGTTGACTTTCAAATTGACTTCTGGAATATATT--TGACTTTCAATTCTTTGATACCATATATAATATACAAT---GTTT--AAACACACTGTTAAGACCATTTAAAACTACATAATATTTTATCAGTAAAATACCTGTATTCTTTTTAAAGTTGTTGTTTCACTACTATGTTAATGTCGGTACAATTATGTTGACTGGTATGCTTACAATCTCATATAGAGAGGCTAAAACAATTTAATTAGAAAGATAAATA-TATCAGGAAGAATAGTCA--GACATTGTGTAACAGAAAACACAACATTTTGATT-ACATTC--GACAAAATCCTATTAAGATTAACTTA----TTATCCAAATCTCGATTATCCCATCTTCACCAACAGCTTCAC---CAACATGTAGATAAT----GTCCAGTCCAGCAACCAATTCT---TCATCACCA---TCCATTACACATCTTCA---T--C-ACCTGAT-TTATC-TCAATCTTC-AGTGTCATCGG-----TGTCATC--C----AT--AA-C-----ATTACC-TGAT--A--CTT-----------C-CA----CACA-CTAAC-T--AC-CATC-AC--T----T-TTCCA---TCATCAT--CCTTA---TGAT--CAACACTTTTATCAT---CATCATCATC--A----A--------TCA-CCT--AT------CA--TCAG---T--AT------CAT---CTGC---AGTTTC-ATTG----AC-ACCATCCT---TAACAATG-C-CCG-ATACCTTCT-T-TTCA-T-T-G-CA------------ATCAT---------CATCCT-T-------ATC-A--CCA--ACA---T---CAT--CATCA-C--TGT-AAT---C------------ATCAT----------------CA---T--C---ATC----AT--CAGCAGC---A--------------AACA---TC-TT-GT--GTC--CA---GTAAT----ACCT-CCATC--TCCAGCTCCAT-TGA-CACCATC--CT-AGCAT-TA-A--A----CAAATACCTTATTATCCTTACAATC---ATCAT--------C---------A------T-CAGTAGCAGC---AGTA-TA--T---A-TATC-TTG-AT-CCGTCCAG------TATTATCCC---CATCTCCAGTTCCATTGACACC-TTCTT-ACAGTACTTGATACAACGTTAT--C--C-TTACCATC---ATC--------------------AT---TATGATCA-CCAACATCATC---ATCACT-------GTA-ATCAT-C-T-CAT----CC--GTC--C-----AG----TG--T-TATTTC--------CAT-TTCAAGTTTCAT---TGG-TGCCATTC-TAACATTACC-TT-TCCC--ACTTTAT--------------CCC---TACCATCATTTT---TATC-GC----------------CAACATGA---TCACTGCAATCATCATCACCATCAGTATACATCTT--CATC-CGTC--CATGGTT---ATCTCCAACTCA--AGTATTATTGACACCAT--T-C--TAACATTTCCCGGT---ACCACCTTATTCTTAC--T---------CAT-------C-----ATTCTTATCAC----------------C----A---ACA-TCT--TCACTG-CA--AT------CATC------A----T---CAT------------CAGC-AGC---ATG-TATCTTCAT--GCGTC-----TAGTATTATCT-C---CATCTCCAA--TTCTAT--TG-ACAACAACCTA----ACATTACCA--G--AT-ACCA-GCTTAT---T-----C-TT--A-C-----C--ATCA------A--C----A--A-CT-TTAT-CGCCAACATCAT--CATC---A-C--T-GC-A--A--TC------------AT-----CAT------C-ATC---AT---TAT--TAG----CAGCAGCAGCAGTA---GCAGA-AGCAGCATG-T--------ATC--TTTATGTGT-C--TAGT---ATTATC---T-C---CATC-T--CCAGTTTTATT----G---A-------C---AG---CATCC-T----A----A---CA-T----T-AC---CTG-------AT-ACC---ACCTT-C-A-TCACCAT--C--------------------------A--CTGT------TATCACCA---TCA---T---C---A-T--C----AT--CAGCAGC-----A----T-ATCTCTTCA---CC-TATTA--AGTACTATCTTCATCTCCA--GTT-CACTT--GACACCAGCC-TAA-C-ATTAC--CTGATACCACC-TAA--AACTTACCATCATC-AT--CTTTACCACCAACACCATCAC---CAC--TGT--TATCTTC-ATC------------ATCATCACCAGCTT-------CAGCA------GCAGCAGCAT-----ATATCTTC--AC-CTATC--CAGTATTATC-TC---CTTCTC-CAGTCTCATTG--AC-ACCATCC-TAA-C-ATT---ACCT-GAT-ACCA-GCTT----------AT-A--CT-TA---------CCA-----------------AC---ATC-----ATCA--A-CA-------CTGT--GAT--AC--TCATCA-CCATCATCAG------CA--GCAGCAG---CAGCAGCATTAT--ATATCTTCAC-C--TATC--CAGTATAACCTCCATCTCTAGTCC-CATTGAC-C-CAATTCT-AACATTACCTAAT-ACCACCTTAAAC--TTACCATC-T-TGTC--CA-T-------ATA-CCAA------CATCA------------------TT---------A---TC-A-TC---ATCATCAGGAGCAGCAGCAGCAGCA-T-----A-TA-TCTTTACC--TATC--CAGTATTTTCTCCATCTCCAGTCCA-ATTGAC-C-CAATTCTAAATTTACCTG-ATACCACC--CAATAC--TTA-CAAC--CATC---A---TCCTTATCACCAACATC---ATCATTAAT-G------TTATTAT----------------------CATC--AAC---AGCAGCAGCATA--TATC-TT-CA-CTTATCCAGTATTTTTTCTCCATCTCCAGTCC-ATTTGACACCATTCTGA-CATTACCTGATATCACCTTATACTTACCATCATCATCCTTATCATCTA-CATCCTCATCACTGTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTATATCTTCAACTA-TCCAGTATAATC-TCATTCTCCAGTCTCAATGATGCCATCCTAACATAACCTGACACAAGC-TT-ATAC--TTACCAAC---A-TC-----ATCAAC---------A-----CT---G--------ATCATCATCA--G----C------AGTAGCAG---C--AGCATATATATTCATGTATCGAGTATTA
gi|2 : TTCTGGAACATGGTTGACTTC-TGAAACATAG-T-TGACTTCTG-----
gi|3 : acactccttacctgaatctatacgttggcaatcagtggatcccgtatgtaaaactttcgaaggactgtgcttctgtttctgaggaccgtcatgtttgcttctggaacttggttggttaacttctggaacatggttgaaTTCTGAG----GATCGTCTTTCTAG------G-T-TGATCTCTGGGACATGGTTGA-TCTCTGGGACATGGTTGA-TTTCTGGG---ACATGGTTGACTTCTGGGATAC-----AGCCGACTT-C----T-TTGTTGACAT----CTGAGTCAAC-------TT-CT-GGGACATG--------GTTGACTTCTGAATgatagacttattggacatagcagacttcaaggtagatgcctaagttgatttataggtcgatttcagggaaatagttgactttcaaattgacttctggaatatatttgactttgaattctttgatgccatatataatatataatgtttgaacacactgttaagaccatttaaaaataccagtattctgtttagagttgttgttttgctactatgttaatgtcagtaaaataatgtcaattggtatgtttacaatctcatatagaaaggctaaaacaattcaattagaaagataaatatatcaggaagtatagtcggacattgtgtaacagaaaacacaacattttgattacactcatcaaaatcaaaatgagattacctattatcgaaatctcgattatcccatcttcaccaacatgtagataatattagtccagtcctgcaaccaattcttcatcatcatccattacacatcttcatcacctgatatatctccatcttcagtgtcatcggtgtcatccataacacttactaccatcacatttccatcatcatcattatgatcaacacttttatcatcataatcaatcacctatcatcagtatcatctgcagtttcattgacaccatccttaacattacccgataccttcttatcattacaatcattatccttagcgccaacatcatcatcactgtaatcatcatcatcatcagcagcagcaaacatcttcttgtgtccagtaatacctccatctccagttccattgacaccatcctagcattacctaatacctttttatccttaccatcatcattttatcaccaacattatcatcattagcatatatatctttatccatccagtattatctccatctcgagttccattgatgctattcttacagtacttgatacaacgttatccttaccatcatcattctgatcaccaacatcatcttcaatgtaatcatctcatccgtccagtgttatttccatttcaagtttcattggtgccattctaacattaccttttcccactttatccctaccatcatttttatcaccaacatgatcttcaatgtaatcatcctcatcagcagcatacatctcatctgtccagtattatttccatttccagtttcattggtgccattctaacattgccttttaccactatatccttaccattatcattcttatcaccaacatcatcactataatcatcatcaccatcagcagcagtatacatcttcatccatccatgattatctcccaactcaagtatcgttgacgccattcttacattacccaataccaccttattcttagcattatcatcatcaccaacatagacactgcaatcatcatcatcagcagcatgtatcttcatgcatcttgtattatgtccatctccagttttattgaccgtataccactttatacttaccatctgtatccatataccaaaatcctcatcactgtgatcatcatcatcatcatcatcaacagcagcagcagtatatcttcatccatccagttttatcaccatgtccagtcccattgacaccatcatagcattaccgtatatcactttatacttaccatctgtatccatataccaacatc
gi|21 : catactccttacctggatctatacctggaactataggtatgtggccaatcagtggatcccaaatgtaaagctttcaaatgaatggacttctgtTTCTGGCACATGGTAGACTTC-AGA------A-T-TGGCAT----------TTT-A-TTTCTGTCACATGGTAGA-CTTCAGTATCGGCAT--TTCATTTCTGGCACAT-----G------taactactggaatatatctgatgccgtataaaatatacagttaagtttttaaaactgttaagaccaattaaaactacatatcaggaaaataccagaatactgtttaagttttgttttgctactatgttagtgtcggtacaataacgccaataagtatgtttgtaatcttatgtagagactagagcaatttaattacaaagataaatattatgaagaatggagatatt
gi|12 : tgtttaatATTGTTGATTTC-TTG------A-T-TAACTACTA-----GGCTG-A-CATCTTAGATATGGTTGA-CTTCTG---------GGCTGGCATCTGATATATTGTTGG------TT-TATGGT-TT-------TACTCCCGGGTTGAC-------TA-CTAGG-ATATGACTTAGAGGCTGACTTCTGG-----T--ACATTA-TTGATTTCT------GAAACAACTTCTGGGAAATGGTTGACTTCTGGGCTGATATCTGG--TACATTGCTGATTTgtagacttc
gi|12 : cGGTTGACTAC-TAG------GATATGACTTAGA-----GGCTG-A-CTTCTGGTACATTATTGA-TTTCTGAA---ACA------ACTTCTGGGAAAT-----G------GT-T----GACT-------T----CTGGGCTGAT-------AT-CT-GGTACATT--------GCTGATTT
gi|2 : cattgttgatttcttgattaactactaggctgacatcttagatatggttgacttctgggctggcatctgatatattgttggtttatggttttactcccg-TAA------G-T-TGATTTATA-----GGTCG-A-TTTCAGGGAAATAGTTGACTTTC--AA---A-----TTGACTTCTGGAATAT-----A------TT-T----
gi|3 : acactccttacctgaatctatacgttggcaatcagtggatcccgtatgtaaaactttcgaaggactgtgcttctgtttctgaggaccgtcatgtttgcttctggaacttggttggttaacttctggaacatggttgaattctggaacatggttgacttctgaaacatagttgacttctggatagacttattggacatagcagacttcaaggtagatgccTTCTA-----GGTTG-A-TCTCTGGGACATGGTTGA-TCTCTGGG---ACATGGTTGATTTCTGGGACAT-----G------GT-T---------------------------GAC-------TT-CT-GGGATACA--------GCCGACTTCT-------------TT-GTTGACATCT------GAGTCAACTTCTGGGACATGGTTGACTTCTGAATTAACTACTGGAATATATC--TGA---------------TGCCGTATAAAATATACAGTTAAGTTTTTAAA---ACTGTTAAGACCAATTAAAACTACATA--------TCAGGAAAATACCAGAATACTGTTTAA-GTT-TTGTTTTGCTACTATGTTAGTGTCGGTACAATAACGCCAATAAGTATGTTTGTAATCTTATGTAGAGA--CTAGAGCAATTTAATTACAAAGATAA--A-TATTATGAAGAATGG--A--GATATTgactttgaattctttgatgccatatataatatataatgtttgaacacactgttaagaccatttaaaaataccagtattctgtttagagttgttgttttgctactatgttaatgtcagtaaaataatgtcaattggtatgtttacaatctcatatagaaaggctaaaacaattcaattagaaagataaatatatcaggaagtatagtcggacattgtgtaacagaaaacacaacattttgattacactcatcaaaatcaaaatgagattacctattatcgaaatctcgattatcccatcttcaccaacatgtagataatattagtccagtcctgcaaccaattcttcatcatcatccattacacatcttcatcacctgatatatctccatcttcagtgtcatcggtgtcatccataacacttactaccatcacatttccatcatcatcattatgatcaacacttttatcatcataatcaatcacctatcatcagtatcatctgcagtttcattgacaccatccttaacattacccgataccttcttatcattacaatcattatccttagcgccaacatcatcatcactgtaatcatcatcatcatcagcagcagcaaacatcttcttgtgtccagtaatacctccatctccagttccattgacaccatcctagcattacctaatacctttttatccttaccatcatcattttatcaccaacattatcatcattagcatatatatctttatccatccagtattatctccatctcgagttccattgatgctattcttacagtacttgatacaacgttatccttaccatcatcattctgatcaccaacatcatcttcaatgtaatcatctcatccgtccagtgttatttccatttcaagtttcattggtgccattctaacattaccttttcccactttatccctaccatcatttttatcaccaacatgatcttcaatgtaatcatcctcatcagcagcatacatctcatctgtccagtattatttccatttccagtttcattggtgccattctaacattgccttttaccactatatccttaccattatcattcttatcaccaacatcatcactataatcatcatcaccatcagcagcagtatacatcttcatccatccatgattatctcccaactcaagtatcgttgacgccattcttacattacccaataccaccttattcttagcattatcatcatcaccaacatagacactgcaatcatcatcatcagcagcatgtatcttcatgcatcttgtattatgtccatctccagttttattgaccgtataccactttatacttaccatctgtatccatataccaaaatcctcatcactgtgatcatcatcatcatcatcatcaacagcagcagcagtatatcttcatccatccagttttatcaccatgtccagtcccattgacaccatcatagcattaccgtatatcactttatacttaccatctgtatccatataccaacatc
gi|21 : catactccttacctggatctatacctggaactataggtatgtggccaatcagtggatcccaaatgtaaagctttcaaatgaatggacttctgtttctgaggatcgtct-----TGTTT-AATTTCTGGCACATGGTAGA-CTTCAGAATTGGCAT--TTTATTTCTGTCACAT-----G------GTAG----A-CT-------T----CAGTATCGGCATTTCATTT-CT-GGCACATG--------GTAGACTTC
gi|2 : GTTA-A-CTTCTGGAACATGGTTGA-ATTCTGGA---ACATGGTTGACTTCTGAAACATA----G------TT-G----A-CT-------T----CTGGATAGAC-------TTATT-GG-ACATA--------GCAGACTTCAAGGTAGAT--GCCTAAGTTGATTTAT------AGGTCGATTTCAGGGAAATAGTTGACTTTCAAATTGACTTCTGGAATATATT--TGACTTTGAATTCTTTGATGCCATATATAATATATAAT---GTTT--GAACACACTGTTAAGACCATTTAA-----------------------AAATACCAGTATTCTGTTTAGAGTTGTTGTTTTGCTACTATGTTAATGTCAGTAAAATAATGTCAATTGGTATGTTTACAATCTCATATAGAAAGGCTAAAACAATTCAATTAGAAAGATAAATA-TATCAGGAAGTATAGTCG--GACATTGTGTAACAGAAAACACAACATTTTGATT-ACACTC--ATCAAAATCAAAATGAGATTA-CCTA----TTATCGAAATCTCGATTATCCCATCTTCAC---------------CAACATGTAGATAATATTAGTCCAGTCCTGCAACCAATTCT---TCATCATCA---TCCATTACACATCTTCA---T--C-ACCTGAT-ATATC-TCCATCTTC-AGTGTCATCGG-----TGTCATC--C----AT--AA-C------------------A--CTT---------------------------AC-T--AC-CATC-AC--A----T-TTCCA---TCATCAT--CATTA---TGAT--CAACACTTTTATCAT---CAT-A--ATC--A----A--------TCA-CCT--AT------CA--TCAG---T--AT------CAT---CTGC---AGTTTC-ATTG----AC-ACCATCCT---TAACATTA-C-CCG-ATACCTTCT-T-ATCA-T-T-A-CA------------ATCAT---------TATCCT-T-------AGC-G--CCA--ACA---T---CAT--CATCA-C--TGT-AAT---C------------ATCAT----------------CA---T--C---ATC----AG--CAGCAGC---A--------------AACATCTTC-TT-GT--GTC--CA---GTAAT----ACCT-CCATC--TCCAGTTCCAT-TGA-CACCATC--CT-AGCAT-T--A--C----CTAATACCTTTTTATCCTTACCATC---ATCATTTTATCACC---------A------A-CATTATCATCATTAGCA-TA--T---A-TATC-TTT-AT-CCATCCAG------TATTATCTC---CATCTCGAGTTCCATTGATGCTATTCTT-ACAGTACTTGATACAACGTTAT--C--C-TTACCATC---ATC--------------------AT---TCTGATCA-CCAACATCATC---TTCAAT-------GTA-ATCAT-C-T-CAT----CC--GTC--C-----AG----TG--T-TATTTC--------CAT-TTCAAGTTTCAT---TGG-TGCCATTC-TAACATTACCTTT-TCCC--ACTTTAT--------------CCC---TACCATCATTTT---TATC-AC----------------CAACATGATCTTCAATGTAATCATCCTCATCAGCAGCATACATC-T--CATC-TGTC--CAGTATT---ATTTCCATTTCC--AGTTTCATTGGTGCCAT--T-C--TAACATTGCCTTTT---ACCACTATATCCTTACCAT---------TAT-------C-----ATTCTTATCAC----------------C----A---ACA-TCA--TCACTA-TA--AT------CATC------A----TCACCAT------------CAGC-AGCAGTATA-CATCTTCAT--CCATC-----CATGATTATCTCC---CAACTCAAG--TATCGT--TG-ACGCCATTCTT----ACATTACCC--A--AT-ACCA-CCTTAT---T-----C-TT--A-G-----C--ATTA------T--C----A-------TCAT-CACCAACATAG----A-C---A-C--T-GC-A--A--TC------------AT-----CAT------C-ATC--------------AG----CAG-------------------------CATG-T--------ATC--TTCATGCAT-C--TTGT---ATTATG---T-C---CATC-T--CCAGTTTTATT----G---A-------C---CG---TATAC-C----ACTTTA---TACT----T-ACCATCTGTATCCATAT-ACCAAAATCCT-C-A-TCACTGT--G--------------------------A--TCAT------CATCATCA---TCA---T---C---A-T--C----AA--CAGCAGC-----AGCAGT-ATATCTTCA---TC-CATCC--AGTTTTATCACCATGTCCA--GTC-CCATT--GACACCATCA-TAG-C-ATTAC--CGTATATCACT-TTA--TACTTACCATCTGT-AT--CCATA-TACCAACATC
gi|21 : acactccttacctgaatctatacgttggcaatcagtggatcccgtatgtaaaactttcgaaggactgtgcttctgtttctgaggaccgtcatgtttgcttctggaacttggttgAT-------TT-CT-GGCACATG--------GTAGACTTC-AGA---ATTGGCATT--TT-ATTTCTGTCACATGGTAGACTTCAG
gi|8 : tgtttaACAATTTAATTATGAAGATAGATACTGT--GAAAGAAACGTAAATGGCATTAT-TAA-AGAAAGCA-----TTTT-ATTGACACTCTTGACGAGA----A--AAAATTAACTTACCTATTATCCAAGTCTTGGCTACCCCA------------ACTTTAT---CAATATTTGAATGAC----TTCTAACCCAGGATCCGATTCT---TTACTATCACACTCCATCATACATCTTTA---T--C-TACTGGC-TTATT-TCTATCTTC-AGTTTCATCGA-----TGTCATC--C----AT--AA-C-----ATTACT-TGtatcggcatttcatttctggcacatggtagacttc
gi|13 : CATCTACATCATCAGCATTATATTCAACATC---ATGAT----ATCT--TCCAACA------TCTATATCATCACTA---T--------CATCTTCAATTT--C-A--TGAT----------ATCTTCTAATATCAACAT-----TATCATC--T----TC--AA-C-----ATCA---TGAT--AATCTT-----------C-CA-----ACA-TCATC-TAAAT-CATC-A------------CCA---TCATCTT--C
gi|13 : ccttgaacatcatcatcatctacaaattcatgttaccttctaacat---TCATCATCA---TC---TACAAAT--TCA---TGTT-ACCT--T-CTAACATCA-TCTAC-A---TCATCAG-----CATTAT--------ATTCAA-C-----ATCA---TGAT--AT-CTT-----------C-CA-----ACATCTA---T--AT-CATC-AC--TATCAT-CTTCAATTTCATGATA-TCTTC---TAATATCAACA---TTATCAT---CTTCAACATC--ATG--A--------TAA-TCT---T------C----CAA---C--AT------CAT---CTAA---A---TC-ATCA----CC-ATCATCTT---CAACAaaca
gi|4 : ccttgaacaCAGTAGATATCTTCA---T--CCGTCCAGTATTATA-TCCTTCTCG-GGTCCCATTGA-----CACCATC--CTAGCAT--GA-CTTTATATCACT-TTAT--A--CTTACCATCTGTATC-CA----TATA-CCAACAT--CCTCATC-ACAGT----G-NNNNN---NNNNNNN--NNNNN---NNNN--NNNNAC----AACAA---CAACAGCAGC--AGAAGA--------T-A-TCTTAAT------CAGTCCAG---T--ATTATCTCCAT---CTGC---AGTCCC-ATTT----AC-ACCATC-T---GAACA-TA-A-CCGTATATCA-CT-T-TATACT-T-A-CC------------ATCTG---------TATCCA-T-------AT--A--CTA--GCA---T---TCT--TATGA-C--TGT-GAT---C------------ATCAT----------------CA---T--C---ATCAACAATAACAGAAGT---A--------------TATA---CC-TTCATCCGTC--CA---GTATT----ATAT-CCATC--TCGAGTCCCAT-TGA-CACCA
gi|6 : acaacagaagATC-TCAACCATC-AGCAACAGCTGCTTTCTATTATCAAC----AT--CATC-----ACTACT-TTAT--C--TTT-----------C-TA----GTCA-TCAGC----AT-GATCTAT--T----T-TT--A---TCAACAT--C---A---TCAT--TACCACTAT-ATCAT---CATCATCATC--ATT--A--------TCGTCCTC-AT------AA--GCAG---CTGAT------TAT---GTGT---ATTTGT-ATTA----GCTGCTAT------TAA-----------------TTTT-G-TTCA-T-A-A-AC------------ATCAT---------CATCTT-C-------ATT-A--TGACTATA---T---CAT--CATCA-T--TGT-CAT---C------------ATCAT----------------CATCCT--C---CTC----AT--TAGCAGC---T--------------GA--------TT-AT--GTG--TATTTGTATT----AGCTGCTATTAATTTTG-TTCAT-AAA-CATCATC--ATCATCAT-TATG--A----C---TATATCATCATCATT---GTC---ATCAT--------C---------A------T-C
gi|13 : CTTG-AACATCATCA--------TCATC--T----AC--AA-------ATT-CA-TGTT--A--CCT-----------T-C-----------TAAC----AT-CATC-------------TACA---TCATCAG--CATTA---TATT--CAACA------TCAT---GAT-ATCTTC--C----A--------ACA-TCT--ATAT----CA--TCAC---T--AT------CAT---CTTC---AATTTC-A-TG----AT-ATCTTC-----TAATA------TCA-ACA-----T-T-ATCA-TCT-T-CA------------A-CAT---------CATGAT-A-------ATCTT--CCA--ACA---T---CAT--C--TA--------AAT---C------------ATCAC----------------CA---T--C---ATC----TT--CAACActcctcatt
gi|7 : c-----TGTCATC-------AT--AA--------TTATCATGATTGA--CAT-----------CGTAATGTCGTA-ATCAT-T--AT-CATC-GC--T----GGTTACA---TTATCAT--ATTCA---TCAT--CA---CTGCTAACAC---CATCGTCATCGTA----A--------T--------AT------CA--TAGG---C--AT------CAT---C-AA---AATTAC-AGTGT---AC-ATCAACTTAGACAACAGTG-T-CAG-AT---TTAT-TATTAA-T-T-G-CATT----------ATCATAAGTAATGACATCGT-T-------ATC-A--TCG--ACA---T---CAT--CACCA-A--TAT-ATT---C------------ATTAT----------------CG---T--C---ATA----AT--AATTAGC---A--------------
gi|18 : attctcaaagttattggtattgtta----T-TTCTA---TCATCATAACC--A---TGAT--CATCATTATTGTCAT---CATCAGCATC-------C--------TCA-TC---AT------TA--ATAG---T--AT------TAT---tcgtcaataacatcg
gi|28 : ggctgctaaatttaatatcgttgttatcatcagtataatcaatattataaCA---TCATAAT--CATTA---TGAT--C------TTGATCGT---GATAATCA-C--A----A--------TC-------AT------CA--TCAG---C--AG------CAA---CAGC---AGtatt
gi|15 : ataTCAT--CATTA---CAAC--CCATAGCTTCATCATCAACAGCAGCATC--A----ATAGCATTCTCA-TC---AT------CA--TCAA---C--AT------AAG---TGGC---AGTGAC-ATTATTTCAC-ACCATC------AGCA--G-CATCA-A---------T-TCCA-T-T-G-T-------------ATAA-------------------------ATC-A--CCA--CCA---C---CAT--CATCA-----GT-CAT---C------------ATCAT----------------TG---T--C---ATC----Acata
gi|26 : tT--TCTTAACCTAAT--CAATACAATCATCAA---CACCATCA-C--A----A--------TCA-C-T--ATAACCAACA--TCAGCATT--AT------CAT---CAGC---AG
gi|5 : tA---TGAT--CAACATCTTGATCAA---CATCATTATC--A-------------TCA-T-T--AT------CA--T------T--AT------CA----CTG--------TT-AT-G----AC---CAT----------AATG-------AT-CATTTT-C-ATCT-T-T-A-CA-------------TC-T---------TGTCCC-TGGTTGAAATC----TCA--ATA---T---CAT--CATCA-T--TAT-CAT---C------------ATCAT----------------CA---T--C---AGC----AG--CAGCAGcagcaacagcagaag
gi|16 : cattatcattatcaccattaccatcattttaatgaccatactgatcattctcatctttactgtcagatgctctacataatcatcagcagcagcagtaacagcagcattatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnttgtcaggagcagcagcagcagcTATCAT---CATGATCATC--ACC--A--------TCA-CC---AT------CA--CCAT---C--AT------CAT---tgtaaccaccatcttaatcattatcatca
gi|9 : tcatcatcattatcagcagcagcatctttatcattactttttatcattatcattattatttttgttatcattatcattaccTCATCATC--A----A---------CA-CC---AC------CA--T------T--AT------CAT---CAAC---AATATC-ATCA----CC-AACATCAT---TAACAACA-C-Ccagtacgattattataa
gi|4 : gcttctgtt--------TCA-TCC--GT------C----CAG---T--AT------TATATCCTTCTCGGGTCCC-ATTG----AC-ACCATCCT----AGCA-TGAC-TTT-ATATCA-CT-T-TATACT-T-A-CC------------ATCTG---------TATCCA-T-------AT--A--CCA--ACA---T---CCT--CATCA-CAGTGN-NNN---N------------NNNNNNNNNNNNNNNNNNNNACA---A--C---AAC----AA--CAGCAGCAGAA--------------GATA---TC-TTAATCAGTC--CA---GTATT----ATCT-CCATC--TGCAGTCCCAT-TTA-CACCATC--TG-AACA--TA-A--C----CGTATATCACTTTATACTTACCATCTGTATC----------C---------A------TATACTAGCAattgtcaacagcaacaacaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngcaacaacaatttcagcatcattatcatcaacaccaccaccatcatcatcataattttgtcaagtcttactaaatac
gi|6 : acaacagaagcagtagatatct--AC------CA--TCAG---C--AA------CAG---CTGC-----TTTCTATTA----TC-AACATCAT------CACTA-C-TTT-AT-CTTTCT-A-GTCA-T-CAG-CATGATCTATTTTTATCAA---------CATCAT-C-------ATT-A--CCA--CTA---T----AT--CATCA-T--CAT-CAT---C------------ATTAT----------------CG---T--C---CTC----AT--AAGCAGC---T--------------GA--------TT-AT--GTG--TATTTGTATT----AGCTGCTATTAATTTTG-TTCAT-AAA-CATCATCATCT--TCAT-TATG--A----C---TATATCATCATCATTGTCATC---ATCAT--------C---------ATCCTCCT-CATTAGCAGCTG-ATTA-TG--T---G-TAT--TTGTAT-TAG-CTGC------TATTA--------ATTTT--GTT-CATAAACATC-ATC-------------AT-CATCATTATGAC--T-ATATCATC---ATC--------------------AT---TGTCATCA-TCATCCTCCTC---ATttcttatgactgtgatcatcatcatcatcaacaataacagaagtatataccttcatccgtccagtattatatccatctcgagtcccattgacacca
gi|9 : atctcaCTTCTGT-TTCA-T-C-ATCA------------A-CAC---------CACCAT-T-------ATC-A--TCA--ACAATAT---CAT--CACCA-A--CAT-CAT---T------------AACAA----------------CA---C--C---ATT----GT--CAACAGC---A--------------At
gi|27 : gT-T-TT---T-T-G-CT------------TTTAT---------TATCAT-T-------ATC-A--GCA--TCA---T---CAT--CATCA-T--AAT-AAT---C------------ACCAT----------------CA---T--C---ATA----AT--CAcaacaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngcaacaacaatttcagcatcattatcatcaacaccaccaccatcatcatcataattttgtcaagtcttactaaatac
gi|22 : ca-TTCA-T-T---CGT-----------ATCAT---------CATC-----------ATC-A--TCA--TCA---T---CAT--CGACA-T--TGT-CTT---C------------ATAAT----------------CA---T--C---TCC----AT--GAGcc
gi|26 : atgtgttcaatttgcattatgtttactatttgaataTCA-A-T-A-CA------------ATCAT---------CA-------------A-C-A--C-----CA---T---CAC--AATCA-C--TAT-AACCAAC------------ATCAG----------------CA---T--T---ATC----AT--CAGCAGC---AGC------------AACA---
gi|19 : tttcttaacctaaTCA-T-T-A-TT------------GTTAT---------CGTCGT-T-------GTC-G--GCG--TCA---T---CAT--CATC----------AT---C------------AAAAT----------------CA---T--C---ATC----AT--CAGCAGC---A--------------Agcagaag
gi|18 : catcaccatcgctatcactagctttttcgtcaacggtagcatcatttacaA-T-T-A-TA------------ATTTC---------TATCAT-C-------ATA-A--CCA--TGA---T---CAT--CATTA-T--TGT-CAT---C------------ATCAG----------------CA---T--C---CTC----AT--CAt
gi|16 : ggctgctaaatttaatatcgttgttatcatcagtataatcaat-T-T-A-TA------------ATAAT---------CGTACTGT-------ATC-A--TCA--------T---GAT--CATCA-C--CAT-CAC---C------------ATCAC----------------CA---T--C---ATC----AT--ttaatagtattattatt
gi|9 : tcatcatcattatcagcagcagcatctttatcattactttttatcattatcattattatttttgttatcattatcattaccTCAT---------CATC-----------AAC-A--CCA--CCA---T---TAT--CATCA-----AC-AAT----------------ATCAT----------------CA---C--C---AAC----AT--CATTAAC------------------AACA---CC-AT--T--GTCAACA---GCAAC----A
gi|4 : gcttctgttATCTT-A-------ATC-AGTCCA--GTA---T---TAT--CTCCATC--TGC-AGT---C-------------CCAT----------------TT---A--C---ACC----AT--CTG-AAC---AT-------------AAC-----C-GT-AT--ATC--AC---TTTAT----ACTTACCATC--TGTA--TCCAT---------ATA--CT-AGCAT-T-----------------CTTATGACTGTGATCATC---ATCAT--------C---------A------T-CAACAATAAC---AGAAGTA--T---A-TACC-TTC-AT-CCGTCCAG------TATTATATC---CATCTCGAGTCCCATTGACACC-acaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngcaacaacaatttcagcatcattatcatcaacaccaccaccatcatcatcataattttgtcaagtcttactaaatac
gi|11 : acaacagaagcagtagatatcttcatccgtccagtattatatccttctcgggtcccattgacaccatcctagcatgactttatatcactttatacttaccatctgtatccatataccaacatcctcatcacagtgnnnnnnnnnnnnnnnnnnnnnnnnnacaacaacaacagcagcagaagatT-C-------ATA-A--TCA--ATA---T---CATACCATTA-C--CAC-AGT---C------------ATCAT----------------CA---T--T---ATCGGT-AT---AGCAGC------------------AACA---TC-a
gi|5 : atcatcatcatcgtcgttgtcgtcgtcgccgccgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncattattgtcatatttatcacagcatcataatcatcattttaatattaactataccgtga-------ATG-A--TCA--ACA---T---CTT--GATCA-A--CAT-CAT---T------------ATCAT----------------CA---T--T---ATC----AT--TATCA-C-------------------------TG-TT-AT--GAC--CA----TAATGATCATTT-TCATC--TTTACATC--T-TGT-C-----C--CT-GG--T-TG-A--AATCTC-AATATC--ATCATCATTATCATC---ATCAT--------C---------A------T-CAGCAGCAGC---AGTG-TAACC---ACCATC-TTA-AT-Caatattatatagcagcatcagaagacac
gi|14 : cattatcattatcaccattaccatcattttaatgaccatactgatcattctcatctttactgtcagatgctctacataatcatcagcagcagcagtaacagcagcattatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnttgtcaggagcagcagcagcagcC-A--ACA--ACA---T---CAA--CACCA-C--TATCAAC---C------------ATCAG----------------CAA--TAGC---ACC----AG--CAGCAGC---ACCACCACCGCCACCACCA---CCGTT-AC--CTC--CA---AGACC----ACCC-TCACC--ACAATCTCAAC-----CACCACCA-CC-AACAA-CA-ATAA----CAACAACATCAACACCACTACCA-----ACCAT--------C---------A------T-CAGCAGCAGC---AGTA-attatcatca
gi|24 : C-A--TCA--GCA---TTAGCAT--TATCA-C--AAT-CAT---C------------ATCAT----------------CA---T--CGATATC----AA--CAGCAGC---A--------------ccagcagc
gi|20 : --CCA--GCA---T---CAC--CATCA-T--AAT-AAT---C------------ATCAT----------------CA---T--C---ATA----AT--Cgcatagccaccaccacattctacaacatcaacagcaga
gi|28 : --ACA---T---CAT--AATCA-T--TAT-GAT---CTTGATCGTGATAATCAC----------------AA---T--C---ATC----AT--CAGCAGC---A--------------Agttgtcgtcgtcgtaatgaacagccgcatattttcatttatatattaactgatatatgattcagttacat
gi|33 : atCG---T---CGT--CGTCG-T--TGT-TGT---C------------ATCAT----------------CA---T--C---AGC----AA--CAGCAGC---A--------------cagcagcata
gi|31 : gtcgtCG---T---TGT--CGTCG-T--CGT-CAT---T------------ATCAT----------------CA---T--C---ATC----AT--CAGCgcagcag
gi|18 : atcgtcgtcgtggtcgtccggttgtA---T---CAT--CATAA-C--CAT-GAT---C------------ATCAT----------------TA---T--T---GTC----AT--CATCAGC---A--------------
gi|16 : ggctgctaaatttaatatcgttgttatcatcagtataatcaatattataatttctAT--CATCA------T-GAT---C------------ATCAC----------------CA---T--C---ACC----AT--CACCATC---A--------------tcctcatcattaatagtattattatt
gi|22 : tcatcatcattatcagcagcagcatctttatcattactttttatcattatcattattatttttgttatcattatcattaccatgaAT---C------------ATCAT----------------CA---T--C---ATC----AT--CATCATC------------------GACA------TT-GT--CTT--CA----TAATC---ATCT-CCATacagtacgattattataa
gi|16 : atgtgttcaatttgcattatgtttactatttgaatattcattcgtT---C------------ATCAT----------------CA---T--T---ATC----AG--CAGCAGC---A--------------gag
gi|4 : AT----ACTTACCATC--TGTA--TCCATATAC-CAACATC--CT---CAT-CA-C--AGTG-NNNNNNNNNNNNNNNNNNNNNNNNN---A-CAA--------C---------A------A-CAACAGCAGC---AG-A--A--G---A-TATC-TTA-AT-CAGTCCAG------TATTATCTC---CATCTGCAGTCCCATTTACACC-ATCTGAACATAACCGTATATCACTTTAT--A--C-TTACCATCTGTATCCATATACTAGCATTCTTATGAC---TGTGATCA-TCATCATCATC---AACAATAACAGAAGTATAT-AC-CTT-CAT----CC--GTC--C-----AG----TA--T-TATATC--------CAT-CTCGAGTCCCAT---TGA-CACCAtctttatcattactttttatcattatcattattatttttgttatcattatcattaccatgatgatggtgatggtgatggtgatgatcatgatgatacagtacgattattataa
gi|13 : acaacagaagcagtagatatcttcatccgtccagtattatatccttctcgggtcccattgacaccatcctagcatgactttatatcactttT-TGAACATCATC--AT---CATCTA---------CAAAT-TCATGTTA-CCTTCTAA-C---ATCAT--------C---------T------A-CATCATCAGC---ATTA-TA--TTCAA-CATC-ATG-ATATCTTCCAACATCTATATCATCACTATCATCTTCAATTTCAT-GATATC-TTCT----AATAT------CAACATTAT--CATC-TT--CAAC---ATC--------------------AT---GATAATCTTCCAACATCATCTAAATCATC-------ACC-ATCAT-C-T-
gi|19 : ccTCATCATCATCAAAATC---ATCAT--------C---------A------T-CAGCAGCAtcaaca
gi|24 : catcaccatcgctatcactagctttttcgtcaacggtagcatcatttacatcattattgttatcgtcgttgtcggcgtcaATTATC---ACAATC---ATCAT--------CATCATCGATA------T-CAACAGCAGC---AGCA-TA--at
gi|28 : catcagcattagcTCACAATC---ATCAT--------C---------A------G-CAGCAACAGC---AGCA-TA--gccaccaccacattctacaacatcaacagcaga
gi|16 : atacatcataatcattatgatcttgatcgtgataaATC---ATCAT--------T---------A------T-CAGCAGCAGC---A
gi|23 : tcATT---ACCAT--------C---------A------T-CAG---CAGC---AGCA-TA--T---T-TATCATTGCAT-TTTATCAT------TATTATtctttatcattactttttatcattatcattattatttttgttatcattatcattaccatgatgatggtgatggtgatggtgatgatcatgatgatacagtacgattattataa
gi|33 : tTC---ATCAT--------C---------A------T-CAGCAACAGC---AGCA-aactgttgttattactatcattataatcattgttatcgttat
gi|16 : gtcgtcgtcgtcgtcgttgttgTC---ATCAT--------C---------A------T-TATCAGCAGC---AGCA-TC--T---T-TATC-gcagcag
gi|5 : CAGCA--TGAT-CAAC---AT--C--T-TGATCAAC---ATC--------------------AT---TATCATCA-TTA---TCATT---ATCACT-------GTT-ATGA-------------CC--AT---------AA----TGA-T-CATTTT--------CATCTTTACATCTTGTCCCTGGTTGAAATCT-CAATATCATC---------------AT--------------CAT---TATCATCATCAT---CATC-AG----------------CAGCA-G-----CAGTGTAACCACCATCTTAATCATTAT-CATCattactttttatcattatcattattatttttgttatcattatcattaccatgatgatggtgatggtgatggtgatgatcatgatgatacagtacgattattataa
gi|18 : cattatcattatcaccattaccatcattttaatgaccatactgatcattctcatctttactgtcagatgctctacataatcatcagcagcagcagtaacagcagcattatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnttgtcaggagcagcagcagCAGTA--TAAT-CAATATTAT--A--A-TTTCTATC---ATC--------------------ATAACCATGATCA-TCATTATTGTC---ATCA----------TC-AGCATCC-T-CAT-----C--ATTAAT-----AG----TA--T-TATTa
gi|9 : ggctgctaaatttaatatcgttgttatcatCAACACCAC--C--A-TTATCATC---AAC--------------------AA---TATCATCA-CCAACATCATT---AACAatt
gi|27 : gcttctgtttcatcatCATTAT--CAGCATCATCATC---ATC--------------------AT---AATAATCA-CCATCATCATA---ATCACacaccattgtcaacagcaacaacaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngcaacaacaatttcagcatcattatcatcaacaccaccaccatcatcatcataattttgtcaagtcttactaaatac
gi|6 : cattttttgcttttattat-TCATCATC---ATC--------------------AT---TATGA-----CTATATCATC---ATCATT-------GTC-ATCA----T-CAT----CC---TC--C-----c
gi|6 : atctcaaccatcagcaacagctgctttctattatcaacatcatcactactttatctttctagtcatcagcatgatctatttttatcaacatcatcattaccactatatcatcatcatcatcattatcgtcctcataagcagctgattatgtgtatttgtattagctgctattaattttgttcataaacatcatcatcttcattatgactatatcatcatcattgtcatcatcatcatcctcctcattagcagctgattatgtgtatttgtattagctgctattaattttgttcataaaca-TCATCATC---TTC--------------------AT---TATGA-----CTATATCATC---ATCATT-------GTC-ATCAT-CAT-CAT----CC---TC--CTCATTAGCAGCTGA-T-TATGTG--------TAT-TT---GT---AT---TAGCTGCTAT---TAATTTTG----T-TCATAAACATCAT--------------C------ATCATCATTATGACTAT---------------------ATCATCA---TCATTGTCATCATCATCCTCCTCAtcatt
gi|22 : atctcaaccatcagcaacagctgctttctattatcaacatcatcactactttatctttctagtcatcagcatgatctatttttatcaacatcatcattaccactatatcatcatcatcatcattatcgtcctcataagcagctgattatgtgtatttgtattagctgctattaattttgttcataaaca-TCATCATC---ATC--------------------AT---CATCATCA-TCGACATTGTC---TTCA----------TA-ATCAT-C-T-Ctt
gi|16 : atgtgttcaatttgcattatgtttactatttgaatattcattcgta---ATC--------------------AT---CATGATCA-TCACCATCACC---ATCACC-------ATC-ATCAT-catgag
gi|27 : tcatcatcattatcagcagcagcatctttatcattactttttatcattatcattattatttttgttatcattatcattaccTT--------------------AT---TATCATTA-TCAGCATCATC---ATCATC-------ATA-ATAAT-CAC-CAT----Cacagtacgattattataa
gi|13 : cattttttgcttATCA-TCTACATCATC---AGCATT-------ATA-TTCAA-CAT-CATGATATC--TTC--C-----AA----CA--TCTATATCATCACTATCATCTTCAA-TTTCA----TGA-TATC-TTC-TAATATCAAC-AT-T-----A--TCAT--------------CTT---CAACATCATGAT---AATCTTC----------------CAACATCA---T--CTA-AATCATCACCATCATCatcataatcacc
gi|8 : ccttgaacatcatcatcatctacaaattcatgttaccttctaacATC---A-CACT-------CCA--TCAT-A---CAT----CTTTATC--T-----AC----TGGCT-TATTTC--------TAT-CTTCAGTTTCAT---CGA-TGTCATCCATAACATTACT-Tttcaaca
gi|4 : acaatttaattatgaagatagatactgtgaaagaaacgtaaatggcattattaaagaaagcattttattgacactcttgacgagaaaaaattaacttacctattatccaagtcttggctaccccaactttatcaatatttgaatgacttctaacccaggatccgattctttactAT-C-TTCAT----CC--GTC--C-----AG----TA--T-TATATC--------CTT-CTCGGGTCCCAT---TGA-CACCATCC-TAGCATGACT-TTATATC--ACTTTATACTTACCATCTGTATCCATATACCAACATCCT---CATC-ACAGTGNNNNNNNNNNNNNNNNNNNN---NNNNNACAA-CAACAACAGCAGCAGAAGATATCTT--AATC-AGTC--CAGTATT---ATCTCCATCTGC--AGTCCCATTTACACCAT--C-T--GAACATAACCGTAT---ATCACTTTATACTTAC------------CAT-------CTGT--ATCCATAT-AC----------------T----A---GCATTCTTATGACTG-TG--AT------CATC------A----T---CATCATCAACAATAACAGA-AGT---ATA-TACCTTCAT--CCGTC-----CAGTATTATAT-C---CATCTCGAG--TCCCAT--TG-ACACCAg
gi|5 : acaacagaagcagtagatCATCATTAT---CATC-AT----------------TATCATTA---TCACTGTTATGACCATAATGATCATT-TTCATCTTTACATCTTGTC--CCTGGTTGAAATCTCAATATCATCATCATTATCATCATCATCAT-CAGCAGCA----GCAGTGTAACCACC--A-TCTTA--------------AT-------C-----ATTATCATCA
gi|16 : cattatcattatcaccattaccatcattttaatgaccatactgatcattctcatctttactgtcagatgctctacataatcatcagcagcagcagtaacagcagcattatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnttgtcaggagcagcagcagcagcatgatcaacatcttgatcaa----------------CATCATGA---TCATCACCATCACCATCACCATCA
gi|26 : tcatcatcattatcagcagcagcatctttatcattactttttatcattatcattattatttttgttatcattatcattaccatgaAACCTAA---TCAATACAATCATCAACACCATCAatacagtacgattattataa
gi|22 : tttcttATCATCATCATCATCATCAT-CATCGA--CAT--TGTCTTCATAATC---ATCTCCAcaatcactataaccaacatcagcattatcatcagcagcagcaacagcagaag
gi|4 : atgtgttcaatttgcattatgtttactatttgaatattcattcgtCAGTAGATATCTT--CATC-CGTC--CAGTATT---ATATCCTTCTCG--GGTCCCATTGACACCAT--C-C--TAGCATGACTTTAT---ATCACTTTATACTTAC--CATCTGTATCCATATACCAAC-----ATCCTCATCACAGTGNNNNNNNNNNNNN----N---NNN-NNN--NNNNNA-CA--A-------CAAC------A----A---CAG------------CAGC-AGA---AGA-TATCTTAAT--CAGTC-----CAGTATTATCT-C---CATCTGCAG--TCCCAT--TT-ACACCATCTGA----ACATAACCG--T--AT-ATCA-CTTTAT---A-----C-TT--A-C-----C--ATCT------G--T----A--T-CC-ATAT--ACTAGCATTCT--TATG---A-C--T-GT-G--A--TC------------AT-----CAT------C-ATC---AT---------------------CAACAATA---ACAGA----AGTATA-T--------ACC--TTCATCCGT-C--CAGT---ATTATA---T-C---CATC-T--CGAGTCCCATT----G---A-------C---AC---CAtgag
gi|5 : acaacagaagTATCATTATCACCAT--TAC--CATCATTTT--AATG--ACCA---------TAC--T---------GAT-------C-----ATTCT--------------------------------CA-TCT--TTACTGTCAG-ATGCTCTACATA------A----T---CAT------------CAGC-AGC---A
gi|19 : catTTATTGTTA---T---------CGT-------C-----GTTGTCGGCGT----------------C----A---TCA-TCA--TCATCA-AA--AT------CATC------A----T---CAT------------CAGC-AGC---Agcagtaacagcagcattatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnttgtcaggagcagcagcagcagcatgatcaacatcttgatcaacatcattatcatcattatcattatcactgttatgaccataatgatcattttcatctttacatcttgtccctggttgaaatctcaatatcatcatcattatcatcatcatcatcagcagcagcagtgtaaccaccatcttaatcattatcatca
gi|13 : catcaccatcgctatcactagctttttcgtcaacggtagcatcatttacatca--T---------CAT-------CTACAAATTCATGTTAC----------------CTTCTA---ACA-TCA--TC--TA-CATCAT------CAGC------A----T---TATATT---------CAAC-ATC---ATGATATCTTCCA--ACATC-----TA-TATCATCA-CTATCATCTTCAA--TTTCAT---G-ATATCT-TCTA----ATATCAACA--T---T-ATCA-TCTT--------------C--A-A-----C--ATCATG----A--T----A--A-TC-TT-----CCAACATCAT--C-----------T-A--A--A--TC------------AT-----CAC------C-ATC---AT---CTT--CAA----CAat
gi|7 : ccttgaacatcatcaAT-------C-----ATTATCATCGC----------------T----GGTTACA-TTA--TCAT----A--TT------CATC------A----T---CA-------------CTGCTAAC---AC--CATCGTCAT---CGT-------AATATCATAG-G---CATCATCAAAATTACAG--TGTACATCAACTTAGACAACAGTGTCA--G--AT--TTA---TTAT---TAATTGCATT--A-T-----C--ATAAGTAATGA--C----A--T-CG-TTAT-CATCGACATCAT--CACC---A-A--T-AT-A--T--TC------------AT-----TAT------C-GTC---AT---AAT--AAT----TAGCATCGTCAATA---ACA
gi|6 : attctcaaagttattggtattgttatgtcatcataattatcatgattgacatcgtaatgtcgtaTTTCTATTAT----------------C----A---ACA-TCA--TCACTA-CT---T------TATCTTTCTAG----T---CAT------------CAGC-ATG---ATC-TATTTTTATCAACATCATCATTACCACTATAT-CAT-CATCATCA----TC-AT--T----ATCGTCCT------CATAAGCA--G--CTGATTATGTGTAT---T-----T-GT--A-T-----T--AGCT------G--CTATTA--A-TT-TTGTTCATAAACATCAT--CATCTTCA-T--T-AT-G--A--CT------------ATAT---CAT------C-ATC---AT---TGT--CAT----CATCATCATCCTCC---TCATT-AGCAGC-TG----------A-----TTATGTGTAT--TTGT---ATTAGC---TGC---TAT------TAATTTTGTTCATAA---A-------C---AT---CATCA-T----C----AT--CA-T----T-A-----TG-------A----------CTA-T-A-TCATCAT--C--------------------------A--TTGT------CATCATCA---TCC---T---C---C-T--C----AT--tcg
gi|14 : atctcaaccatcagcaacagctgcCAT----------------C----A---ACA-CC-----ACTATCA--AC------CATC------AGCAATAG-CAC------------CAGC-AGC---A-G-CACCACCAC---CGCC------ACCACCACCG-T---TACCTCCAA--GACCACCCTC-ACCACAATCT------CA--ACCA---------CCA------------------------C-----C--ACCA------A--C----A--A-CA-ATAA-CAACAACATCAA--CACC---A-C--T-AC--------C------------A-------AC------C-ATC---AT---------------CAGCAGCAGCAGTA---CCAGC-AGCt
gi|16 : caacaa--AT------CATC------A----T---TAT------------CAGC-AGC---A-G-CATCTTTAT--
gi|4 : tcAGC-AGT---AGA-TATCTTCAT--CCGTC-----CAGTATTATAT-C---CTTCTCGGG--TCCCAT--TG-ACACCATCCTA----GCATGACTT--T--AT-ATCA-CTTTAT---A-----C-TT--A-C-----C--ATCT------G--T----A--T-CC-ATAT--ACCAACATCCT--CATC---A-CAGT-GN-N--N--NN------------NN-----NNN------N-NNN---NN---NNN--NNNNNNACAACAACAACAGCA---GCAGA-AG------A-T--------ATC--TTAATCAGT-C--CAGT---ATTATC---T-C---CATC-T--GCAGTCCCATT----T---A-------C---AC---CATCT-G----A----A---CA-T----A-AC---CGT-------AT-ATC---ACTTTAT-ACTTACCAT--CTGTATCCATATACTAGCATTCTTATGA--CTGT------GATCATCA---TCA---T---C---A-T--CAACAATAACAGAAGT-----A----T-ATACCTTCA---TC-CGTCC--AGTATTATATCCATCTCGA--GTC-CCATT--GACACCAcattactttttatcattatcattattatttttgttatcattatcattaccatgatgatggtgatggtgatggtgatgatcatgatgatacagtacgattattataa
gi|6 : acaacaga--TTCTAT--TA-TCAACA---T------CATCAC--------T-ACT----TTATCTTT-----C-TA--G-T-----C--ATCA------G--C----ATGATCTATTTT-TATCAACATCAT--CATT---A-C--C-ACTAT-A--TC------------AT-----CAT------C-ATC---AT---CAT--TAT----CGTC-----C--T-----CATA-AGCAGC-TG----------AT-----TATGTGTAT--TTGT---ATTAGC---TGC---TATT------AATTTTGTT----C---ATAAACATC---AT---CATCT-T-------------CA-T----T-A-----TG-------A----------CTA-T-A-TCATCAT--C--------------------------A--TTGT------CATCATCA---TCATCCT---C---C-T--C----AT--TAGCAGCTGATTA----T-GTGTATTTG------TATTA--GCTGCTA--TTAATTTT----GTT-CA-TA--AACATCATCA-TCATC-ATTATGACT-ATATCATCATCA-----TTGTCATCATC-AT--CCT
gi|19 : atctcaaccatcagcaacagctgctCATCACCATCGCTATCACTA-GCTTTT---T-----C-GTCAA-CGGTAGC--ATCATTT---A--C----A--T-CA-TTAT-TGTTATCGTCGT--TGTC---G-G--C-GT-C--A--TC------------AT-----CAT------C-ATCAAAAT---CAT--CAT----CATCAGCAGCAATcctcatt
gi|9 : -GCTTCTG--T-----T-TC--A-T-----C--ATCA------A--C----ACCA-CCATTAT-CATCAACAATAT--CATC---A-C-----C-A--A---C------------AT-----CATTAACAAC-ACC---AT---TGT--CAA----CAGCAACAACAANN---NNNNN-NNNNNNNNN-N--------NNN--NNNNNNNNN-N--NNNN---NNNNNN---N-N---NNNN-N--NNNNNNNNNNN----N---N-------N---NN---NNNNN-N----N----N---NN-N----N-NN---NNGCA-----AC-AAC---AATT------TCAGCAT--C--------------------------A--TTAT------CATCAACA---CCA---C---C---A-C--C----AT--CATCATC-----A----TAATTTTGTCAAGTCT-TACTA--AATAC
gi|27 : TTGC---T-----T-TT--A-T-----T--ATCA----------------------TTAT-CAGCATCATCAT--CATC---A-T--A-AT-A--A--TC------------AC-----CAT------C-ATC---AT---AAT--CA
gi|26 : cattttT---T-----C-TT--AAC-----CTAATCA------ATAC----A--A----TCAT-CAACACCATCAC--AATC---A-C--T-AT-A--A--CC------------AA-----CAT------C-AGC---AT---TAT--CAT----CAGCAGCAGCAACA---GCAGA-AGcc
gi|15 : t-TT--A-C-----A--ACCC------A--T----A--G-CT-TCAT-CATCAACAGCAG--CATC---A-A--TAGC-ATTC--TC------------AT-----CAT------C-ATC---AA---CAT--AAG----TGGCAGTGACATTA---
gi|20 : ttcatcaCCAGCATCAC--CATC---A-T--A-AT-A--A--TC------------AT-----CAT------C-ATC---AT---AAT--tttcacaccatcagcagcatcaattccattgtataaatcaccaccaccatcatcagtcatcatcattgtcatca
gi|5 : CAATATCAT--CATC---A-T--T------------------------AT-----CAT------C-ATC---AT---CAT--CAG----CAGCAGCAGT-GTA---ACcgttgtcgtcgtcgtaatgaacagccgcatattttcatttatatattaactgatatatgattcagttacat
gi|14 : cattatcattatcaccattaccatcattttaatgaccatactgatcattctcatctttactgtcagatgctctacataatcatcagcagcagcagtaacagcagcattatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnttgtcaggagcagcagcagcagcatgatcaacatcttgatcaacatcattatcatcattatcattatcactgttatgaccataatgatcattttcatctttacatcttgtccctggttgaaatctCAACATCAA--CACC---A-C--T-------A--TC------------A-------AC------C-ATC---AG---CAA--TAG----CACCAGCAGCAGCA---CCAcaccatcttaatcattatcatca
gi|24 : caaCAGCATTAG--CATT---A-T--C-AC-A--A--TC------------AT-----CAT------C-ATC---ATCGATAT--CAA----CAGCAGCAGCA-TA---GCccaccgccaccaccaccgttacctccaagaccaccctcaccacaatctcaaccaccaccaccaacaacaataacaacaacatcaacaccactaccaaccatcatcagcagcagcagtaccagcagc
gi|11 : catCAATATCATACCATT---A-C--C-AC-A--G--TC------------AT-----CAT------C-ATT---ATCGGTA---TAG----CAGCAACATCAATA---TTATATAGCAGCATcaccaccacattctacaacatcaacagcaga
gi|13 : atcatcatcatcgtcgttgtcgtcgtcgccgccgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncattattgtcatatttatcacagcatcataatcatcattttaatattaactataccgtgatcataatAACATCAT--CATC---ATC--T-AC-A--AATTC------------ATGTTACCTT------CTAAC---AT---CAT--CTA----CATCATCAGCATTATATTC----AACATCATGAT--------ATC--TTCCAACAT-C--TA-T---ATCATC---A-CTATCATC-T--TCAATTTCA-T----G---A-------T---AT---C-TTC-T----A----A---TA-T----CAAC---AT---------T-ATC---ATCTT-C-A-ACATCATGAT--------------------------A--ATCT------T-CCAACA---TCA---T---CTAAA-T--C----AT--CACCATC-----A---------TCTTCA---cagaagacac
gi|28 : ccttgACATCAT--AATC---A-T--T-AT-G--A--TCTTGATCGTGATAAT-----CAC------A-ATC---AT---CAT--CAG----CAGCAACAGCAGCA---aca
gi|33 : atCGTCGT--CGTC---G-T--T-GT-T--G--TC------------AT-----CAT------C-ATC--------------AG----CAACAGCAGCAGCA---GCAGta
gi|27 : gtcgtATCAT--TATC---A------GC-A-----TC------------AT-----CAT------C-ATC---AT---AAT--AAT----CACCATCATCA
gi|18 : cattttttgcttttattATCAT--CAT--------------A--A--CC------------AT-----GAT------C-ATC---AT---TAT--TGT----CATCATCAGCAtaatcacc
gi|15 : ggctgctaaatttaatatcgttgttatcatcagtataatcaatattataatttctT--CATC---A-T--T-AC-A--A--CC-------------------CATAG----C-TTC---AT---CAT--CAA----CAGCAGCATCAATA---GCATT-CTCATCAT--C--------ATCAACATAAGTGG-C---AGTGACATTATT---T-CA--CACC-A--TCAG-----------------------C---AG---CATC-------A----ATTCCA-T----T-GT---ATA-------A--ATC---ACCAC-C-A-CCATCAT--C--------------------------A----GT------CATCATCA---TTG---T---C---A-T--C----Atcctcatcattaatagtattattatt
gi|11 : t--A--TC------------AT-----CAT------C-GTC---GT---TGTCGTCG----TCGCCGCCGNNNNN---NNNNN-NNNNNNNNN-N--------NNN--NNNNNNNNN-N--CATT---ATTGTCATAT-T---TATC----ACAGCATCATA----A---T-------C---AT---CATTT-T----A----A---TA-T----T-AA---CT--------AT-ACCGTGATCAT-A-A-TCAATAT--C--------------------------ATACCAT------TACCACAG---TCA---T---C---A-T--C----AT--TATCGGT-----A----T-A
gi|16 : atcT-----CAT------C-ATC---AT---TAT--CAG----CAGCAGCAgcagcaacatcaatattatatagcagcatcagaagacac
gi|5 : T---TGT--CAG----GAGCAGCAGCAGCA---GCATG-ATCAACATC-TTGATCAACATC--ATTAT-CAT-CATTATC---ATTATC---A-C---TGTTATGACCA----TAAT----G---AT------C---ATTTTCATCT-T----T----A---CA-TCTTGT-CC---CTG-------GT-TGA---AATCT-C-A-ATATCAT--C--------------------------A--TCAT------TATCATCA---TCA---T---C---A-T--C----AG--CAGCAGC-----AGTG-T-AAC----CA---CCATCTTA--ATCATTATCATCAtctttatcattactttttatcattatcattattatttttgttatcattatcattaccatgatgatggtgatggtgatggtgatgatcatgatgatacagtacgattattataa
gi|25 : cattatcattatcaccattaccatcattttaatgaccatactgatcattctcatctttactgtcagatgctctacataatcatcagcagcagcagtaacagcagcattatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnAGAAGTA---GTAGT-AGTAGCATG-T--------GT---------TGT-C---------ATTAAC---T-T---CA------------TTATG----G----------------T---CATTT-T-------------CA-T----T----------------AT-TCC---ATTTT-T-A-TCGCCAT--T--------------------------A--TTGT------CATTACCA---TC
gi|8 : CATCATA-C--------ATC--TTTATCTA--C--TGGC----TTATT---T-C---TATC-T--TCAGTTTCATC----G---A-------T---GT---CATCCAT----A----A---CA-T----T-AC---TTG-------
gi|19 : acaatttaattatgaagatagatactgtgaaagaaacgtaaatggcattattaaagaaagcattttattgacactcttgacgagaaaaaattaacttacctattatccaagtcttggctaccccaactttatcaatatttgaatgacttctaacccaggatccgattctttactatcacactcATC---G-C---TATC-A--CTAGCTTTTTC----GTCAA-------CGGTAG---CATCA-TTTACA----T---CA-T----T-AT----TG-------TT-ATC---GTCGT-T-G-TCGGCGT--C--------------------------A--TCAT------CATCATCAAAATCA---T---C---A-T--C----AT--CAGCAGC-----A----
gi|26 : catcaccCC-T----A----AT--CA-A----T-AC-----A-------ATCATC---AACAC-C-A-TCACAAT--C--------------------------A--CTATAACCAACATCAGCA---TTA---T---C---A-T--C----AG--CAGCAGC-----A----at
gi|27 : tttcttaaT-ATC---AGCAT-C-A-TCATCAT--C--------------------------A--TAAT------AATCACCA---TCA---T---C---A-T--A----AT--CAacagcagaag
gi|18 : cattttttgcttttattatcatTT-CTA-TCATCAT--A--------------------------A--CCAT------GATCATCA---TTA---TTGTC---A-T--C----AT--CAGCA-----------------TCCTCA---TC--ATTAATAGTATTATcc
gi|33 : ggctgctaaatttaatatcgttgttatcatcagtataatcaatattataatT-C-G-TCGTCGT--C--------------------------G--TTGT------TGTCATCA---TCA---T---C---A-G--C----AA--CAGCAGC-----A----tatt
gi|14 : gtcg-C-A-TCAACAC--C--------------------------A--CTAT------CA--ACCA---TCA---G---C---AATAGC----AC--CAGCAGC-----A----G--------CA---CC-----------ACCACCGCCACCACCACCGTT--ACCTCCAAGACCACCC-TCA-CCACAAT--CTCA-ACCACC-----------ACCACCAAC-AA--CAATAACAACAACATCAACAC---CAC--TAC--CA------ACC------------ATCATCAGCAGCAG-------CAGTA------CCAGCAGCgcagcag
gi|24 : caacaa-C-A-TCAGCAT--T--------------------------A--GCAT------TATCACAA---TCA---T---C---A-T--C----AT--CATCG-------A----T-ATC
gi|16 : ATCAT--C--------------------------A--TGAT------CATCACCA---TCA---C---C---A-T--C----AC--CATCATC-----A----T-aacagcagcagcatagccaccaccacattctacaacatcaacagcaga
gi|27 : tcatcatcattatcagcagcagcatctttatcattactttttatcattatcattattatttttgttatcattatcattaccTAT------TATCATTA---TCA---G---C---A-T--C----AT--CATCATC-----A----T-Aacagtacgattattataa
gi|22 : cattttttgctttTAT------CATCATCA---TCA---T---C---A-T--C----AT--CATCGAC-----A----T--TGTCTTCA---------TA--A---------TCATCTCCA--ataatcaccatcatcataatcacc
gi|23 : atgtgttcaatttgcattatgtttactatttgaatattcattcg------TATTACCA---TCA---T---C---A-G--C----A-----GCAGC-----A----T-ATTTtgag
gi|4 : AGCAGT-----A----G-ATATCTTCA---TC-CGTCC--AGTATTATATCCTTCTCGG--GTC-CCATT--GACACCATCC-TAG-C-ATGAC--TTTATATCACT-TTA--TACTTACCATCTGT-AT--CCATAT-ACCAACATCCTCAT---CACAGTGN--NNNNNNN-NNN------------NNNNNNNNNNNNNNACAACAACAACA------GCAGCAGAAG-----ATATCTTA--AT-CAGTC--CAGTATTATC-TC---CATCTG-CAGTCCCATTT--AC-ACCATCT-GAA-C-ATA---ACCG-TAT-ATCA-CTTT----------AT-A--CT-TA---------CCA-----------------TCTGTATCCATATACTA--G-CA-------TTCT--TATG-ACTGTGATCA-TCATCATCAT------CA--ACAATAA---CAGAAG---TAT--ATACCTTCAT-C--CGTC--CAGTATTATATCCATCTCGAGTCC-CATTGACAC-CAatcattgcattttatcattattataactgttgttattactatcattataatcattgttatcgttat
gi|8 : acaacagaCATC-----A----T-ACATCTTTA---TC-TACTG--GCT--TATTTCTATCTTCA--GTTTCA-TC--GATGTCATCCATAA-C-ATTAC--TTG
gi|26 : acaatttaattatgaagatagatactgtgaaagaaacgtaaatggcattattaaagaaagcattttattgacactcttgacgagaaaaaattaacttacctattatccaagtcttggctaccccaactttatcaatatttgaatgacttctaacccaggatccgattctttactatcacactcACC-TAATCAA--TACAATCATC-A-------A-CACCATCACAATCAC---TAT--AAC--CAACATC-AGC------------ATTATCATCAG----------CAGCA------GCAACAGCA
gi|13 : tttcttaCC-TTG--AAC--ATCATCATC-AT--CT-----ACAAAT----TCA---------TGT--TACCTTCTAAC------------ATCATCTACATCAT-------CAGCATTATATTCAACATCATG----ATATCTTCCAAC---ATC--TA-TATCATC-ACTATCATCTT-CAATTTCA-TG--AT-ATC-TTC-TAA-T-ATCA--ACAT---T-ATCA-TCTTCAACATCATGAT-AATCT-T----------CCA-----------------AC---ATC-----ATCT--A---------------------AA--TCATCA-CCATCATCgaag
gi|15 : TTACAACC--C-ATAGCTTCATCATCAACAGCAGCAT---CAA--TAG--CATTCTC-ATC------------ATCATCAACA---T-------AAGTG------GCAGTGACAT------TAT-TTC--ACACCATCAGCAGCATCAAT-TC---Cttcaaca
gi|6 : ttcatcaCATGATCTAT--TTTTATCAACATCATCATTAC---CAC--TATATCATCATC-ATC------------ATCATTATCGTCCT-------CATAA------GCAGCTG-AT------TATGTGT--AT-TT-------GTATTAGC-TG---CTATT---AATTTTGTTC--ATAAACAT-------C-ATC---ATCT------TCA---TT----------ATGA--CT--------------------------------AT---ATC-----ATCA--T-CA-------TTGT--CAT--CA--TCATCA-TCCTCCTCAT------TA--GCAGCattgtataaatcaccaccaccatcatcagtcatcatcattgtcatca
gi|9 : atctcaaccatcagcaacagctgctttctattatcaacatcatcactactttatctttctagtcatcagTTCATCATCAACACCA---C---CAT--TAT--CATCAAC-AAT------------ATCATCACCAACAT-------CATTA------ACAACACCAT-----tgattatgtgtatttgtattagctgctattaattttgttcataaacatcatcatcatcattatgactatatcatcatcattgtcatcatcatcctcctcatt
gi|26 : gcttctgtATCATCAACACCATCACAATCAC--TAT--AACCAAC-ATC------------AGCATTATCA---T-------CAGCA------GCAGCAACAtgtcaacagcaacaacaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngcaacaacaatttcagcatcattatcatcaacaccaccaccatcatcatcataattttgtcaagtcttactaaatac
gi|14 : tttcttaacctaatcaatacaCAACAACATCAACAC---CAC--TAT--CA------ACC------------ATCAGCAATAGCAC-------CAGCA------GCAGCACCAC------CACCGCC--AC-C-A-C--CACCGTTACC-TC---CAAGAC-CACCCTCAC-----C-ACAATCT-CAA-CCACC---ACC------ACCA-AC------------A--A--CAATA---------ACA-----------------AC---AAC-----ATCA--A-CA-------CCAC----T--AC---CA--A-CCATCATCAG------CA--GCAGCAG---TACCAGCAgcagaag
gi|24 : CATCAGCATTAG---CAT--TAT--CACAATC-ATC------------ATCATCATCGATAT-------CAACA------GCAGCAGCAT-----Agc
gi|28 : ACATCATAAT---CAT--TAT--GATCTTG-ATCGTGATAATCACAATCATCATCAGC----------AGCA------ACAGCAGCAT-----Agccaccaccacattctacaacatcaacagcaga
gi|11 : atATCATCAT---CAT--CGT--CGTTGTC-GTC------------GTCGCCGCC-GNNN-------NNNNN------NNNNNNNNNN-----NNNNNNNN--NN-NNNNN--CATTATTGTCATA---TTTATCACAGCATCATAA--TC-ATCATTT-TAA-T-ATT---AACT--AT-ACCGTGATC----------AT-A------A---------TCA-----------------AT---ATC-----AT-A--C-CA-------TTAC--CAC--AG--TCATCA-TCATTATCGG------TATAGCAGCAA---CATCAATATTAT--ATA
gi|33 : CGTCGT---CGT--TGT--TGTCATC-ATC------------ATCAGCAACAG----------CAGCA------GCAGCAGgcagcatcagaagacac
gi|16 : gtcgtcgtAC--TGT---ATCATC-ATG------------ATCATCACCA---T-------CACCA------TCACCATCAT-----
gi|4 : tcatcatcattatcagcagcagcatctttatcattactttttatcattatcattattatttttgttatcattatcattaccatg-------CAACA------GAAGCAGTAG-----ATATCTTC--AT-CCGTC--CAGTATTATA-TC---CTTCTC-GGGTCCCATTG--AC-ACCATCC-TAG-C-ATG---ACTT-TAT-ATCA-CTTT----------AT-A--CT-TA---------CCATCTGTATCCATATACCAAC---ATC-----CTCA--T-CA-------CAGT--GNN--NN--NNNNNN-NNNNNNNNNNNNNNNACA--ACAACAA---CAGCAGCAGAAG--ATATCTTAAT-C--AGTC--CAGTATTATCTCCATCTGCAGTCC-CATTTACAC-CA--TCTGAACATAACCGTAT-ATCACTTTATAC--TTACCATC-TGTATC--CA-T-------ATA-CTAG------CATTC------------------TTATGACTGTGA---TC-A-TC---ATCATCATCAACAATAACAGAAGTA-T-----A-TA-CCTTCATC--CGTC--CAGTATTATATCCATCTCGAGTCCC-ATTGACAC-CAacgattattataa
gi|5 : a-------CAGCA------GCAGCAGCATGATCAACATCTTG--AT-CAA----CATCATTATCATC---ATTATC--ATTATCACTGTTATGACCATAA-TGATC-ATTTTCATCT-T-T-AC-A-TCTT----------GT-C--CC-TGGTTGAAATCTCA-----------------AT---ATC-----ATCA--T-CA-------TTAT------------CATCA-TCATCATCAG------CA--GCAGCAG---
gi|8 : cattatcattatcaccattaccatcattttaatgaccatactgatcattctcatctttactgtcagatgctctacataatcatcagcagcagcagtaacagcagcattatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnttgtcaggagCATCAT-----ACATCTTT--AT-CTA-C--TGGC-TTATT-TC---TATCTT-CAGTTTCATCG--AT-GTCATCCATAA-C-ATT---ACTT-Gtgtaaccaccatcttaatcattatcatca
gi|5 : acaatttaattatgaagatagatactgtgaaagaaacgtaaatggcattattaaagaaagcattttattgacactcttgacgagaaaaaattaacttacctattatccaagtcttggctaccccaactttatcaatatttgaatgacttctaacccaggatccgattctttactatcacactcTCATTA--TC-ACCAT---TAC-C-ATC---ATTTTAATGACCA----------------T-A--CT-GA---------TCA-----------------TT---CTC-----ATCT--T-TA-------CTGTCAGAT--GC--TCTACA-TAATCATCAG------CA--GCAGCAGTAACAGCAGCATTAT--
gi|26 : catta---ACCT-AAT---CA-A--T----------AC-A--AT-CA---------TCA-----------------AC---ACC-----ATCACAATCA-------CTAT--AACCAACA-TCAGCA-TTATCATCAG------CA--GCAGCAA---CAGCAGnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnttgtcaggagcagcagcagcagcatgatcaacatcttgatcaacatcattatcatcattatcattatcactgttatgaccataatgatcattttcatctttacatcttgtccctggttgaaatctcaatatcatcatcattatcatcatcatcatcagcagcagcagtgtaaccaccatcttaatcattatcatca
gi|27 : tttcttaTT----------AT-C--AT-TA---------TCA-----------------GC---ATC-----ATCA--T-CA-------TCAT--AAT--A-----ATCA-CCATCATCAaag
gi|14 : cattttttgcttttaCA-----------------AC---AAC-----ATCA--A-CA-------CC---------AC--T-ATCAACCATCAGCAA------TA--GCACCAG---CAGCAGCACCAC---CACCGCCAC-C---A-C--CACCGTTACCTCCA-----AGACCACCCTCAC-CACAATCTC-AAC--CACC-----ACCACCAACAACAATAACAA-----------CA---------ACA-TCAA------CACCA------------------CT---------A---CCAA-CC---ATCATCAGCAGCAGCAGTACCAGCA-taatcacc
gi|24 : CA-----------------TC---AGC-----ATTA--G-CA-------TTAT--CAC--AA--TCATCA-TCATCATCGA------TA--TCAACAG---CAGCAGCATgc
gi|9 : C---ATC-----ATCA--A-CA-------C---------------CACCA-TTATCATCAA------CA--ATATCAT---CACCAACATCAT--agccaccaccacattctacaacatcaacagcaga
gi|15 : gcttctgtttC---ATC-----ATCA--A-CAGCAGCATCAAT--AGC--AT--TC-TCA-TCATCATCAA------CA--TAAGTGG---CAGTGACATTAT-------TTCACAC--CATCAGCAGCATCAATTCCATtaacaacaccattgtcaacagcaacaacaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngcaacaacaatttcagcatcattatcatcaacaccaccaccatcatcatcataattttgtcaagtcttactaaatac
gi|33 : ttcatcattacaacccatagcttTGT--CAT--CA--TCATCA-GCAACAGCAG------CA--GCAGCAG---tgtataaatcaccaccaccatcatcagtcatcatcattgtcatca
gi|28 : gtcgtcgtcgtcgtcgttgtGT--GAT--A-----ATCA-CAATCATCAT------CA--GCAGCAA---CAGCAGCAT
gi|16 : atacatcataatcattatgatcttgatc--TCATCA-TCATTATCAG------CA--GCAGCAa
gi|23 : ATTA-CCATCATCAG------CA--GCAGCAtctttatcattactttttatcattatcattattatttttgttatcattatcattaccatgatgatggtgatggtgatggtgatgatcatgatgatacagtacgattattataa
gi|33 : tTCA-TCATCATCAG------CA--ACAGCAG---CAGCAGCAtatttatcattgcattttatcattattataactgttgttattactatcattataatcattgttatcgttat
gi|16 : gtcgtcgtcgtcgtcgttgttgCATCATCAT------TA--TCAGCAG---CAGCATCTTTAT--g
gi|5 : tTCAG------GA--GCAGCAG---CAGCAGCATGATCAACATCTTGAT-CAACATC---ATTAT------CATCATTA---T-CATTATC-A-CTGTTAT-GAC----CATAATGATCATTTTCATC--TTTACATC-T-TGTC--CC-TGGTTGAAATC-TCAA------TATCA------------------TC---------A---TC-A-TT---ATCATCATCATCATCAGCAGCAGCA-cattactttttatcattatcattattatttttgttatcattatcattaccatgatgatggtgatggtgatggtgatgatcatgatgatacagtacgattattataa
gi|32 : cattatcattatcaccattaccatcattttaatgaccatactgatcattctcatctttactgtcagatgctctacataatcatcagcagcagcagtaacagcagcattatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnttgAG------CA--GCAGCAG---CAGCATCATTAT--gtgtaaccaccatcttaatcattatcatca
gi|4 : CAA---CAGAAGCAGTAG--ATATCTTCAT-C--CGTC--CAGTATTATATCCTTCTCGGGTCC-CATTGAC-A-CCATCCT-AGCATGACTTTAT-ATCACTTTATAC--TTACCATC-TGTATC--CA-T-------ATA-CCAACATCCTCATCACAGTGNNNNNNNNNNNNNNN---------N---NN-N-NN---NNNNACAACAACAACAGCAGCAGAA-G-----A-TA-TCTTAATC--AGTC--CAGTATTATCTCCATCTGCAGTCCC-ATTTACAC-CA--TCTGAACATAACCGTATATCACT--TTATAC--TT----AC--CATCTGTA---TCCATAT-ACTAGCATT---CTTATGACT-GTGATCATCATCAT----------------------CATC--AACAATAACAGAAGTATA--TACC-TT-CA-TCCGTCCAGTA--TTATATCCATCTCGAGTCC-CATTGACACCAcctcgatgttattatcataaaattataattatcact
gi|26 : aTTCTTAACCTAATC-AAT-ACAATCATCAAC----ACCATC-A-CAAT--CACT-------ATAACCAA------CATC------------------------------A---GC-A-TT---ATCATCAGCAGCAGCAACAGCAG
gi|28 : tAT-AC-ATCATAATCA-TTATGATC-T-TGAT--CG-TG------ATA------------ATCA------------------CA---------A---TC-A-TC---ATC------AGCAGCAACAGCAGCA-T-----A-aag
gi|19 : --TTATCGTCGT-TGTCGGCG-T--------CA-TCAT------CATCA------------------TC---------AAAATC-A-TC---ATCATCAGCAGCA
gi|14 : catcaccatcgctatcactagctttttcgtcaacggtagcatcatttacatcattattg-------ACA-TCAA------CACCA------------------CT---------A---TC-AACC---ATCAGCAATAGCACCAGCAGCAGCACC-----ACCA-CCGCCACC---A-C--CACCGTTACCTCCA-----AGACCACCCTCAC-CACAA-TCTCAA-CCACC-----ACCACCAACAACAA--TAA-CAAC--AA----------------CATCAACACC---ACTACCA------------ACCAT----------------------CATC--AGC---AGCAGCAGTAat
gi|24 : caacaCAAT-----CATCA------------------TC---------A---TC-A-TCGATATCAACAGCAGCAGCAccagcagc
gi|33 : catcagcattagcattatca------CGTTG------------------TT---------G---TC-A-TC---ATCATCAGCAACAGCAGCAGCAGCA-tagccaccaccacattctacaacatcaacagcaga
gi|19 : gtcgtcgtcgtcgt------CATCA------------------TC---------A---TC-A-TCAAAATCATCATCATCAGCAGCAg
gi|29 : catcaccatcgctatcactagctttttcgtcaacggtagcatcatttacatcattattgttatcgtcgttgtcggcgtTTA------------------TT---------A---TC-A-TT---ATCATCATGCTCAGCATCATCAat
gi|24 : A------------------TC---------A---TC-A-TC---ATCATCGATATCAACAGCAGCAGCA-T-----A-ctatcatgaaaatcatttattaatattaatatc
gi|16 : catcagcattagcattatcaca------------------TC---------A---TC-A-TC---ATTATCAGCAGCAGCATCTTTATCA-T-------TACTTTTTATCATTATCATTATTATTTTgccaccaccacattctacaacatcaacagcaga
gi|23 : T---------A---TT-A-CC---ATCATCAGCAGCAGCAtgttatcattatcattaccatgatgatggtgatggtgatggtgatgatcatgatgatacagtacgattattataa
gi|5 : TCAGGAGCAGCAGCAGCAGCA-TGATCAA-CA-TCTTtatttatcattgcattttatcattattataactgttgttattactatcattataatcattgttatcgttat
gi|32 : cattatcattatcaccattaccatcattttaatgaccatactgatcattctcatctttactgtcagatgctctacataatcatcagcagcagcagtaacagcagcattatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnttgAGCAGCAGCAGCAGCATCA-T-------TA-TCCTgatcaacatcattatcatcattatcattatcactgttatgaccataatgatcattttcatctttacatcttgtccctggttgaaatctcaatatcatcatcattatcatcatcatcatcagcagcagcagtgtaaccaccatcttaatcattatcatca
gi|4 : CAACAGAAGCAGTA-G-----A-TA-TCTTCATC--CGTC--CAGTATTATATCCTTCTCGGGTCCC-ATTGAC-A-CCATCCTAGCATGACTTT-ATATCACT--TTATAC--TTA-C-----CATCTGTA---TCCATAT-ACCAACATCCTCATCAC-AGT-G------NNNNNNNNNNNNNNNNNNNNNNNNNACAACAAC--AAC---AGCAGCAGAAGA--TATC-TT-AA-TCAGTCCAGTATTAT--CTCCATCTGCAGTCCCATTT-ACACCAT-CTGAACATAACCGTATATCACTTTATACTTACCATCTGTATCCATAT-A-CTAGCATTCTTATGACTGTcgatgttattatcataaaattataattatcact
gi|26 : aTTAACCTA-AT--------CAATACAATCATCAACACCATC---ACAATCACTATAACCAACATC---AGCA-------------TTATCAT----------------------CAGC--AGC---AGCAACAGCAgatcatcatcatcatcaacaataacagaagtatataccttcatccgtccagtattatatccatctcgagtcccattgacacca
gi|6 : tttcAT--CATC---A---TCATTATGACTA-TATC---ATCATCATT-G------TCATCAT----------------------CATC--gaag
gi|20 : atctcaaccatcagcaacagctgctttctattatcaacatcatcactactttatctttctagtcatcagcatgatctatttttatcaacatcatcattaccactatatcatcatcatcatcattatcgtcctcataagcagctgattatgtgtatttgtattagctgctattaattttgttcataaacatcatcatcttcattatgactatatcatcatcattgtcatcatcatcatcctcctcattagcagctgattatgtgtatttgtattagctgctattaattttgttcataaacatcAT--CACC---A---TCATAATAATCATCATC---ATCA-TAATCG------TTGTCGT----------------------CGTCGTAATG--AACAGCCGC--A--TATT-TT-CA-TTTATctcctcatt
gi|24 : ccagc--CATT---A---GCATTATCACAATCATC---ATCATCATC-G-----------AT-----------------------ATC--AAC---AGCAGCAGCATA--atattaactgatatatgattcagttacat
gi|9 : catcag--CATC---A---TC---AACACCACCATT---ATCATCAAC-A------ATATCAT----------------------CACC--AAC---ATCATTAACAgccaccaccacattctacaacatcaacagcaga
gi|7 : gcttctgtttC---A---TCGTTATCATCGACATC---ATCACCAAT-ATAT---TCATTAT----------------------CGTC--Aacaccattgtcaacagcaacaacaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngcaacaacaatttcagcatcattatcatcaacaccaccaccatcatcatcataattttgtcaagtcttactaaatac
gi|5 : attctcaaagttattggtattgttatgtcatcataattatcatgattgacatcgtaatgtcgtaatcattatcatcgctggttacattatcatattcatcatcactgctaacaccatcgtcatcgtaatatcataggcatcatcaaaattacagtgtacatcaacttagacaacagtgtcagatttattattaattgcattatcataagtaatgaCAATATC---ATCATCATT-A------TCATCAT----------------------CATC--ATC---AGCAGCAGCAtaataattagcatcgtcaataacatcg
gi|5 : cattatcattatcaccattaccatcattttaatgaccatactgatcattctcatctttactgtcagatgctctacataatcatcagcagcagcagtaacagcagcattatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnttgtcaggagcagcagcagcagcatgatcaacatcttgatcaacatcattatcatcattatcattatcactgttatgaccataatgatcattttcatctttacatcttgtccctggttgaaatctCATC---ATCATTATC-A------TCATCAT----------------------CATC--AGC---AGCAGCAGTGTA---ACC-AC-CATCTTAATCATTATgtgtaaccaccatcttaatcattatcatca
gi|33 : cattatcattatcaccattaccatcattttaatgaccatactgatcattctcatctttactgtcagatgctctacataatcatcagcagcagcagtaacagcagcattatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnttgtcaggagcagcagcagcagcatgatcaacatcttgatcaacatcattatcatcattatcattatcactgttatgaccataatgatcattttcatctttacatcttgtccctggttgaaatctcaatatCGTC---GTCGTTGTT-G------TCATCAT----------------------CATC--AGC---AACAGCAGCAcatca
gi|23 : gtcgtcgtTATTAC----------------------CATC--ATC---AGCAGCAGCATATTTATCATTGCATTTTAT-CATTATTgcagcag
gi|4 : C--AAC---AGAAGCAGTAGA--TATC-TT-CA-TCCGTCCAGTATTAT--ATCCTTCTCGGGTCC-CATTGACACCATCCTAG-CATGACTTTATATCACTTTATACTTACCATCTGTATCCATAT-ACCAA-CATCCTCATCACAGT------GNNNNNNNNNNNNNNNNNNNNNNNNNACAACAACAACAGCAGCAGAAGATATCTT-AATCAGTCCAGTATTATC-TCCATCTGCAGTCCCATTTACACCATCTGAACATAACCGTATATCACT-TT-ATAC--TTACCATCTGTA-TCCATATACTAGCATTCTTATGA-----CT---GTGATCATCATCATCATCA--A----C------AATAACAG---A--AGTATATACCTTCATCCGTCCAGTATTAataactgttgttattactatcattataatcattgttatcgttat
gi|11 : aATAATCATCATTTT--AATATTAACTATACCGTGAT--CATAATC------AATA-TC-ATACCATTACCA-C---AGTC-----ATCA--------------------------------TCATTATCG--G----T------A-TAGCAG---C--AACATCAATATT-ATATAGC-AGCATCAtatccatctcgagtcccattgacacca
gi|26 : atcatcatcatcgtcgttgtcgtcgtcgccgccgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncattattgtcatatttatcacagcatcCACAATCACT-ATA-----ACCAAC---A-TC-----AGCA--------------------------------TTATCATCA--G----C------AGCAGCAA---C--AGCAgaagacac
gi|15 : tttcttaacctaatcaatacaatcatcaacaccatAGC-TTCATCA--TCAACAGC---A-GC-----ATCAAT---------AGCATTCT---C--------ATCATCATCA--A----CATA---AGTGGCAG---T--GACAT-TAT-TTCAgaag
gi|19 : ttcatcattacaacccat--TCATCATC---A-TC-----ATCAA---------------------A--------ATCATCATCA--T----C------AGCAGCAcaccatcagcagcatcaattccattgtataaatcaccaccaccatcatcagtcatcatcattgtcatca
gi|5 : catcaccatcgctatcactagctttttcgtcaacggtagcatcatttacatcattattgttatcgtcgttgtcggcgCAAT---A-TC-----ATCATC---------A-----TT---ATC------ATCATCATCA--T----C------AGCAGCAG---C--AGTGTAat
gi|14 : cattatcattatcaccattaccatcattttaatgaccatactgatcattctcatctttactgtcagatgctctacataatcatcagcagcagcagtaacagcagcattatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnttgtcaggagcagcagcagcagcatgatcaacatcttgatcaacatcattatcatcattatcattatcactgttatgaccataatgatcattttcatctttacatcttgtccctggttgaaatctCAAC---A-TC-----AACACC---------A-----CTACCA--------ACCATCATCA--G----C------AGCAGCAGTACC--AGCAaccaccatcttaatcattatcatca
gi|24 : caacaacatcaacaccactatcaaccatcagcaatagcaccagcagcagcaccaccaccgccaccaccaccgttacctccaagaccaccctcaccacaatctcaaccaccaccaccaacaacaataacaaAGC---A-TT-----ATCA-C---------A-----AT---C--------ATCATCATCATCGATATC------AACAGCAG---C--AGCATAgc
gi|6 : catcagcattAT---A-TC-----ATCATC---------A-----TT---GTC------ATCATCATCA--T----CCTCCTCATTAGCAG---CTGATTATGTGTATT--TGTATgccaccaccacattctacaacatcaacagcaga
gi|9 : atctcaaccatcagcaacagctgctttctattatcaacatcatcactactttatctttctagtcatcagcatgatctatttttatcaacatcatcattaccactatatcatcatcatcatcattatcgtcctcataagcagctgattatgtgtatttgtattagctgctattaattttgttcataaacatcatcatcttcattatgactC---A-TC-----ATCAAC---------A-----CC---ACC------ATTATCATCA--A----C------AATATCAT---C--ACCAtagctgctattaattttgttcataaacatcatcatcatcattatgactatatcatcatcattgtcatcatcatcctcctcatt
gi|33 : gcttctgtttC---A-TC-----ATCA--------------------------------TCAGCAACA--G----C------AGCAGCAG---C--AGacatcattaacaacaccattgtcaacagcaacaacaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngcaacaacaatttcagcatcattatcatcaacaccaccaccatcatcatcataattttgtcaagtcttactaaatac
gi|33 : gtcgtcgtcgtcgtcgttgttgt--------ATCATCATCA--G----C------AACAGCAG---C--AGCA
gi|28 : gtcgtcgtcgtcgtcgttgttgtc--------ATCATCATCA--G----C------AGCAACAG---C--AGCATAgcag
gi|16 : atacatcataatcattatgatcttgatcgtgataatcacaTCATCATCA--T----T------ATCAGCAG---C--AGCATCTTTA-TCAT
3 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|10 ): TTATCGACATCGTATAACAATACTTTATCGACATAGTCATTGCAAACTATTATCGACATCGTCACTGCCAATGCCATTGCCACCGTTTTCGACATCGTAATTGTCATCGTCATTGCTGACGTTATTGACATTTTCATTGACACCATTATCTCCATCGTTATTGCCACCGTTATTGATATTGTCAATATCATTGTTATCGACAGCGTCATTGCCATTTTCATT
Unaligned ( gi|17 ): CACTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCCACCGTTATCATCATACCCCATCATCAGTGCTAT
Unaligned ( gi|30 ): TTGTCATTATTATCATTATTGTTATCAGTAATATCCTCTTTTTTTCCATCTCGCCCTCCTCCTCCT
Alignments
lowQualScore : 1111111111111111111111111111111111111111
lowQualScore : 11111 1111 555555555555 1111111 1 1 333333333 55555555555 11 22222222 4444444444444 1 1 333333 2 33 11 11111 99999999999999 555555555 111 11 22222 11 222222222222222222 3333333333333333333333333 222 11 111111111111111 111 22222222222222222222222222 22222222222 1111111111111 11111 333333333333 2222 2222 1 222222222 1 33333333333 44444444444 2222222 1 33333 22222222 1 111 22 2 1 333 1 11 444444444 11 222 111 22222 2 1 11111 3333 11111 111 111 11 222222222 1111 111111111 5555555555555555555555555555555555555555555 111111 11111 3333333333 11 1 1 2222 33333333333333 2222222 1 44444444444 111 11111 222222 1 222222222 111 11 1 11 55555555555 22 11 11 222222222222222222 333 11111 2 11 111 1 5555555555555 222 55555 1 11 1 1 1 444444 1 22 222 11 2 4 77777777777777777777777777777777 2 1 4 111 1 8888888888888888888888888888888888888888
lowQualScore : 1 3 88888 5555 3 1 1 555555555555 5 11 1111111 0 0 0 0 0 888888888 1 55555555555 55 0 1 3 33 6 6 0 1 00000000 7 0 6 1 6 9999999999999 1 1 2 6 0 1 0 0 1 0 0 6 0 88 3 0 6 1 555555 6 6 0 6 6 3 00 1 0 0 7 11 22222 6 1 0 11 0 77777777777777 1 1 0 0 1 6 999999999 0 777 2 3 33 66 1 1 3 00000 11 333333333333333333 1 666 6 2222222222222222222222222 000 1 6 11 99 1 9 3 666666666666666 111 99 0 2 7 1 6 6 88888888888888888888888888 0 8 6 00000000000 6666666666666 4 1 5 00000 1 11 1 7777 3 666 444444444444 0000 1 1111 0 0 555555555 2 33 0 2 33333333333 77 3 77777777777 2222222 0 0 2 6 2 1 66666 88888888 0 777 1 1 22222 1 6 6 6 6 6 77 0 6 7 6 1 1 555 1 3 3 1 5 55 1 1 0 1 55 0 222222222 00 1 555 0 3 444 00000 3 1 7 1 0 4 2 0 2 4 4 1 44 1 44444 1 6666 0 1 1 5 88888 77 000 0 7 44444 2 111 11 0 111111111 3 8 4444 2 5 2 555555555 5 5555555555555555555555555555555555555555555 2 777 777 111111 77 666 66666 6666666666 11 88 0 1 0 3 2 1111 3 88888888888888 0000000 0 0 44444444444 77 1 0 000 55 1 1 77 77 66 4 55555 1 4 777777 5 0 1 111111111 999 22 0 2 0 99 66666666666 1 3 2 1 77 88 7 1 11 33 888888888888888888 333 2 2 55 77777 2 0 4 77 1 222 0 1 1 8 3 3 2222222222222 3 333 00000 0 22 7 1 5 5 1 222222 1 1 1 1 6 6 1 5 6 77 6 6 2 3 77 4 3 4 2 66 888 2 88 66 4 0 1 0 1 1 88888888888888888888888888888888 2 0 5 1 0 22 2 1 000 6 333 55 3 0 6 4 8888888888888888888888888888888888888888 6 2 3 1 2 6 6
lowQualScore : . . ..... .... . . . ............ . .. ....... . . . . . ......... . ........... .. . . . .. . . . . ........ . . . . . ............. . . . . . . . . . . . . . .. . . . . ...... . . . . . . .. . . . . .. ..... . . . .. . .............. . . . . . . ......... . ... . . .. .. . . . ..... .. .................. . ... . ......................... ... . . .. .. . . . ............... ... .. . . . . . . .......................... . . . ........... ............. . . . ..... . .. . .... . ... ............ .... . .... . . ......... . .. . . ........... .. . ........... ....... . . . . . . ..... ........ . ... . . ..... . . . . . . .. . . . . . . ... . . . . . .. . . . . .. . ......... .. . ... . . ... ..... . . . . . . . . . . . . .. . ..... . .... . . . . ..... .. ... . . ..... . ... .. . ......... . . .... . . . ......... . ........................................... . ... ... ...... .. ... ..... .......... .. .. . . . . . .... . .............. ....... . . ........... .. . . ... .. . . .. .. .. . ..... . . ...... . . . ......... ... .. . . . .. ........... . . . . .. .. . . .. .. .................. ... . . .. ..... . . . .. . ... . . . . . . ............. . ... ..... . .. . . . . . ...... . . . . . . . . . .. . . . . .. . . . . .. ... . .. .. . . . . . . ................................ . . . . . .. . . ... . ... .. . . . . ........................................ . . . . . . .
lowQualScore : 0 2 88888 2222 2 4 4 000000000000 0 88 0000000 8 8 5 2 8 222222222 0 88888888888 88 2 0 2 88 5 7 7 0 33333333 3 7 7 0 7 7777777777777 0 0 0 7 7 0 7 7 0 7 7 7 7 55 2 0 5 0 555555 7 7 7 7 7 3 77 0 7 7 3 00 77777 7 0 7 33 7 33333333333333 0 0 7 7 0 7 777777777 7 555 5 2 88 88 2 0 8 00000 00 555555555555555555 4 333 7 0000000000000000000000000 888 0 7 22 88 0 8 5 777777777777777 777 22 8 8 0 0 7 7 66666666666666666666666666 4 0 7 55555555555 4444444444444 0 0 7 00000 0 44 0 7777 6 444 888888888888 0000 0 2222 2 0 888888888 5 55 0 5 22222222222 55 0 55555555555 8888888 0 2 5 7 5 0 55555 33333333 0 555 0 0 77777 0 0 0 0 0 0 55 0 0 0 0 0 0 000 0 0 0 0 5 55 0 0 7 0 77 7 777777777 77 0 000 7 7 000 55555 7 0 3 0 0 0 5 5 5 0 0 0 00 0 00000 0 5555 8 4 4 7 22222 99 000 4 6 77777 2 888 00 4 000000000 6 0 2222 3 7 0 666666666 0 2222222222222222222222222222222222222222222 6 000 000 555555 99 999 33333 7777777777 22 33 7 0 0 5 8 2222 5 22222222222222 0000000 2 0 88888888888 55 0 4 000 00 0 7 99 99 77 3 66666 2 2 444444 0 0 0 222222222 555 00 0 0 2 88 88888888888 2 5 5 0 33 33 3 0 00 88 333333333333333333 000 5 5 00 55555 5 0 0 55 0 333 7 0 0 3 3 7 0000000000000 7 333 00000 5 00 0 0 0 0 0 000000 0 0 0 0 0 0 0 0 0 00 0 0 5 0 55 0 0 0 5 55 555 5 00 55 0 0 0 0 0 0 00000000000000000000000000000000 5 0 0 0 0 00 5 0 000 0 000 55 0 5 0 0 5555555555555555555555555555555555555555 0 5 0 0 5 0 0
consensus : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTCTGGNACATGGTTGACTTCTGGA--TTGGCTTCTAGGTTNACTTCTGGGACATGGTTGACTTCTGGA--G---------ACATGGTTGATTTCTGGNACAT-GTTTACTTCCGGGTNGACTTCTGGGACAT--------AGCNGACTTCTAGGTAGATGCCTTAGTTGATTTCTGGGTCGACTTCNGGGAAATGGTTGACTTCCGAATTGACTTCTGGAATATATT--TGACTTT-AATTCTTTGATGCCGTATATAATATACAGTTAAGTTTTTAAACACACTGTTAAGACCATTTAAAACTACATA--------TCAG-AAAATACCAGTATTCTGTTTAGAGTTGTTGTTTCGCTACTATGTTAATGTCGGTACAATAACGTCGATTGGTATGTTTACAATCTCATATAGAGAGGCTAAAACAATTTAATTANAAAGATAAATA-TATCAGGAAGAATAGTCA---GACATTGTGTAACAGAAAACACAACATTTTGATT-ACACTC--GACGAAATCAAAATGAGATTAACTTACCTATTATCCAAATCTCGATTATCCCATCT-----------TT-ACCAACATGTAGATAATNTCTAGTCCAGN------A-CCGATTCTTCATCATCA---TCCATTACACATCTTCA--TCACCTGATTTATCTCNATCTTCAGCGTCATCGGC-----GTCATCCAT--AACATCACT---TGATA-CTTCCA-A-CACCAACTACCATC-ACT----T-T--T--CCA---T------CAT---CATCNT-TACGATCA-ACACTNTTATCATCATCATCATC--A--ATCACC--TATCAT---CAGC--ATCATCTGNAGTTTCATTG-AC-ACCAT-C-TT-A----ACA-TGCCCGATACCTTCTT-TTCATTA-CA--A--------TCA---T---------CAT-CGTTATCACC-----ANCATCATCATCATCGTNA----TCATCAT-CA---TCATCATCAGCAGCA--AACA---TC-TTGTGTCCA---GTAAT----ACCT-CCATC--TCCA-GCTCCATTGACACCATCCT-AGCATTA-AA----CAA-TACCTTATCATCNTTACCATCATCAT-----------CATCAGCAGCAGCAGCAT-A--TA-TAT-CTTGATCCGTCCAGTATTATCCCCATCTCNAGTTCCATTGACGCCNTTCCTTACAGTAC-T-GATACAACGTT-AT---CCTTATCATCATCATCATGATCATCANCATCATCATCATCGTAATCATCTCATCCGTCCAGTGTTATTTCCATTTCAAGTTTCATTGGTGCCATTCTAACATTACCTTTTCCCCACTTTATCCCTACCATCATTTTTATCGCCAACATGATCTTCANTGCAATCATCNTCACCANCAGCATACATCTTCATCCGTCCANNGTTATCTCCATCTCNAGTTTTATCGNCGCCGTTCTAACATCGCCTTGT-ACCACCTTATTCTTAC--TCGTCGTTCTTATCGCCAACATCATCACTANAATCATCAT---CATCAGCAGC---ATGCATCTTCATCCGTCCATTATTATCTCCCANCTCNAGTNCCGTTGACGNCANCCTNACATTACCCGATACCANCTTATTCTTA-CC--ATCAACACC--N-TTATCACCAACATCATCATCACTACAATCAT---CAT--CATCATC---ATCAGCAGCAGCAGCAATAGCAGNAGCAGCATGTATC--TTCAT--GCGTC--TAGT---ATTATTTC-CAT--CTCCAGTT-TTATCG--GC-----ATC-ATCCTA-ACATTAC---C-----TG--------A-TA-TC---ANCATC---ATCA---TCATCATCGT------CATCATCATCGTCATCATCA--GC-AGCA-TATNTCTTCATCCATTA--AGTATTATCTCCATCTCCAG--TTCCATTG-ACACCANCNTA----ACANTACC---TTAT-------ATCACTT-TA-ACT-TACCATCGN---------CATCNTTACCACCAACATCATCGCCACCG---TCGTCGTCGTCGTCATCGNCAGCANCA--GC--AG-CAGCANCAC--ACATCTNCACCGATC--CANCATTATC-TCCNTNTC-CAGCCTCATTGNCACCATC-TTAAC-ATTACCT-ATACCANC-TTATACT-TATCAACANCATCANCGCCAC-ATACTCATCACCATCATCAGCA--GCAGCAGCAGCAGCATTAT--ATATCTTCATC--CATCCAGTATNACCTCCATCTCTANTNCCATTGNCACCGATTNTGACCATNACCTGATACCATCTTAATC-TTANCATCTTGTCC---GT----AT-CCAACATCATCATC---ATCATCATCAGCAGCAGCAGCAGCAGCGTAACCACCATCTTNACCTATCCAGTATTTTCTCCATCTCCAGTCCAATTGAC-CCAATTCTAAATTTACCTGATACCACCCAATACTTACAACCATCATCCTTATCACCAACATCATCATTAATGTTATTATCATCAACAGNAGCAGCANATATCTTCACCCGTCCAGTATTTTNTNTCCNTCTCCGGTCCNNTTGACACCATCCTAGACATNACCTNATATCACCTTATACTTACCATCNNCATCCNTATCACCNA-CATCCTCATCACNGTT-----GNNNNNNNNNNNNNNNNNNNNNNNNNACAACAACAACAGCAGCAGAANATATCTTCAACCAGTCCAGTATNATC-TCNNTCTNCAGTCCCANTNACGCCATCCGAACATAACCNNACACNANCTTATACTTACCANCTGTATCCATCAACACTGGCATTCTTATGACTGTGATCATCATCATCATCAGCAGTAGCAGNAGCATATACNTTCATNCGTCNAGTATTA
Reference ( family-1427 ) : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTCTGGNACATGGTTGACTTCTAGG--TTGACTTCTAGGTTGATTTCTGGGACATGGTTGACTTCTGGA------------ACATGGTTGACTTCTGGNACAT-GTTTNCTTCTGGGTCGACTTCTGGNACAT--------GGCNGACTTCTGGATA--TGCATTAGTTGATTTCTGGGTCGACTTCNGGGAAATGGTTGACTTCCGAATTGACTTCTGGAATATATT--TGACTTTGAATTCTTTGATGCCGTATANAATATACAGTTAAGTTTTTGAACACACTGTTAAGACCANTTAAAACTACATA--------TCAGGAAAATACCAGNATNCTGTTTAGAGTTGTTGTTTTGCTACTATGTTAGTGTCGGTANAATAACGCCAATNGGTATGTTTGCAATCTCATGTAGAGAGGCTAGAACAATTTAATTACGAAGATAAATA-TATCAGGAAGAATNGT-A---GACATTGTGTAACAGAAAGCACAACATTTTGATTGACACTCTTGNCGAGATCAAAATGAGATTAACCTACCTATTATCNAAGTCTCGGCTACCCCATCT-CAC-----GCTT-ATCAACATNTGGATGATNTCTAGTCCAGC------A-CCGATTCTTCATCATCA---TCCATTACACATCTTCA--TCACCTGGTTTATCTCNATCTTCAGTNTCATCGGC-----GTCATCCAT--AACATCACT---TGATA-CTTCCA-A-CACCAACTATCATC-ACT----T-T--T--CCA---T------CAT---CATCNT-TATGATCA-ACACTNTTATCATCATCATCATC--A--ATCATC--TATCAT---CAGC--ATCATCTGCAGTTTCATTG-AC-ACCAT-C-TT-A----ACA-TGCCCGATACCTTCTT-TTCATTA-CA--A--------TCA---T---------CAT-CNTTATCACC-----ANCATCATCATCACCGTNA----TCATCAT-CA---TCATCATCAGCAGCA--AACA---CC-TTATGTCCA---GTANT----ACCT-CCATC--TNTA-G-TCCATTGACACCATCCT-AGCATTA-AA----CAA-TATCTCATCATCATTACCATCATCAT-----------CATCAGCAGCAGCAGCAT-A--TA-TAT-CTTGATCCGTCCAGTATTATCTCCATCTCGAGTTCCATTGACACCNT--CT-ACAGTAC-T-GAT-CAACATT-AT---CCTTATCATCATCATTATGATCATCANCATCATCATCACCGTNATCATCTCATCCGTCCAGTGTTATNTCCATCTCGAGTCTCATTGGCGCCATCCTAACATTACCTTT--CC-ACTTCATCCCTACCATCATTATCATCACCANCATNA---TCANTGCAATCATCATCATCATCANTATACATCTTCATCTGTCCAGTATTATCTCCATCTCNAGTNTCATTGNCACCATTCCAGCATNACCTTATGACCACTTTATNCTTAC--TCATCATTCTCATCACCAACATCATCACTACAATCATCAT---CATCAGCAGC---ATGCATCTTCATCCGTCCANTATTATNT-CCATCTCCAGTCCCATTGACACCATCCTAACATNACCANATACCANCTTATTCTTA-CC--ATCAACANC--C-TTATCACCAACATCATCATCACTACAATCAT---CAT--CATCATC---ATCAGCAGCAGCAGCAGTAGCAGNAGCAGCATGTATC--TTTAT--GCGTC--TAGT---ATTATCTC-CAT--CTCCAGTT-TCATTG--AC-----ATC-ATCCTA-ACATTAC---C-----TG--------A-TA-TC---ANCNTC---ATCA---TCATCATCGT------CATCATCATCATCATCATCA--GC-AGCA-TATNTCTTCATCCATTA--AGTATTATCTCCATCTCCAG--TCCNATTG-ACACCATCCTA----ACATTACC---TTAT-------ATCACCT-TA-ACT-TACCATCAT---------CATCCNTATCACCAACATCATCACCACTA---TCATCATCATCATCATCANCAGCATCA--GC--AG-CAGCAGCAT--ATATCTTCATCNATC--CAGCATTATC-TCCNTCTC-CAGTCTCATTGACACCATC-CTAAC-ATCACCT-ATACCANC-TTATACT-TATCAACATCATCANCACTAT-ATANTCATCATCATCATCAGCA--GCAGCAGCAGCAGCATTAT--ATATCTTCATC--CGTCCAGTATTATNTCCATCTCGAGTCCCATTNACACCAATTCTAAC-ATAACCTNATACCACCNTNAAC-TTACCATCTTGTCC---GT----ATACCAACATCATCATC---ATCATCATCAGCAGCAGCAGCAGCAGCATA-----TATCTTCATCCGTCCAGTATTATNTCCATCTCGAGTCCCATTNACACCAA-TCTNAANTNACCTNATATCACTCNATACTTACAACCATCATCATTATCACCAACATCATCATCANCGTCATCATCATCAACAGCAGCAGCATATATCTTCATCCGTCCAGTA--TTATATCCATCTCGAGTCCCATTGACACCATCCTGGACATGACCGTATATCACTTTATACTTACCATCTGTATCCATAT-ACCNAGCATCCTCATNACNGT------GNNNNNNNNNNNNNNNNNNNNNNNNNACAACAACAACAGCAGCAGAAGATATCTT-AATCAGTCCAGTATNATCATCNNTCTGCAGTNCCANCTACACCGTNNNAACATAACCGTACACAATCTTATACTCACCAAC---AT-CATC-ACACTA-----------------------ATCATCATCAGCAGCAGCAGCAGCATATATATTCATNTATCCAGCATCA
gi|1 : TTCTGAGATATGGTTGACCTTTAAG--TCGACTTCTGTGTTTACTTCTGGAACATGGTTGATTTCTGAA------------ACATGGTTGACTTCTGGAACAT-GTTTTTTTCTGGATAGACTTCTGG-ACAT--------AGCAGACTTCTAGATAGATGCCTTAGTTGATTTCTTGGTCGATTTCAGGGAAGTGGTTGACTTTCAAATTGACTTCTGGAATATATT--TGACTTTCAATTCTTTGATACCATATATAATATACAAT---GTTT--AAACACACTGTTAAGACCATTTAAAACTACATAATATTTTATCAGTAAAATACCTGTATTCTTTTTAAAGTTGTTGTTTCACTACTATGTTAATGTCGGTACAATTATGTTGACTGGTATGCTTACAATCTCATATAGAGAGGCTAAAACAATTTAATTAGAAAGATAAATA-TATCAGGAAGAATAGTCA---GACATTGTGTAACAGAAAACACAACATTTTGATT-ACATTC--GACAAAATCCTATTAAGATTAACTTA----TTATCCAAATCTCGATTATCCCATCTTCACCAACAGCTTCACCAACATGTAGATAATGTCCAGTCCAGC------AACCAATTCTTCATCACCA---TCCATTACACATCTTCA--TCACCTGATTTATCTCAATCTTCAGTGTCATCGGT-----GTCATCCAT--AACATTACC---TGATA-CTTCCACA-CACTAACTACCATC-ACT----T-T--T--CCA---T------CAT---CATCCT-TATGATCA-ACACTTTTATCATCATCATCATC--A--ATCACC--TATCAT---CAGT--ATCATCTGCAGTTTCATTG-AC-ACCAT-CCTT-A----ACAATGCCCGATACCTTCTT-TTCATTG-CA--A--------TCA---T---------CAT-CCTTATCACC-----AACATCATCATCACTGTAA----TCATCAT-CA---TCATCATCAGCAGCA--AACA---TC-TTGTGTCCA---GTAAT----ACCT-CCATC--TCCA-GCTCCATTGACACCATCCT-AGCATTA-AA----CAAATACCTTATTATCCTTACAATCATCAT-----------CATCAGTAGCAGCAGTAT-A--TA-TAT-CTTGATCCGTCCAGTATTATCCCCATCTCCAGTTCCATTGACACCTT--CTTACAGTAC-TTGATACAACGTT-AT---CCTTACCATCATCATTATGATCACCAACATCATCATCACTGTAATCATCTCATCCGTCCAGTGTTATTTCCATTTCAAGTTTCATTGGTGCCATTCTAACATTACCTTT--CCCACTTTATCCCTACCATCATTTTTATCGCCAACATGA---TCACTGCAATCATCATCACCATCAGTATACATCTTCATCCGTCCATGGTTATCTCCAACTCAAGTATTATTGACACCATTCTAACATTTCCCGGT-ACCACCTTATTCTTAC--TCATCATTCTTATCACCAACATCTTCACTGCAATCATCAT---CATCAGCAGC---ATGTATCTTCATGCGTCTAGTATTATCT-CCATCTCCAATTCTATTGACAACAACCTAACATTACCAGATACCAGCTTATTCTTA-CC--ATCAACAAC--T-TTATCGCCAACATCATCATCACTGCAATCAT---CAT--CATCATT---ATTAGCAGCAGCAGCAGTAGCAGAAGCAGCATGTATC--TTTAT--GTGTC--TAGT---ATTATCTC-CAT--CTCCAGTT-TTATTG--AC-----AGC-ATCCTA-ACATTAC---C-----TG--------A-TA-CC---ACCTTC---ATCA---CCATCACTGT------TATCACCATCATCATCATCA--GC-AGCA-TATCTCTTCACCTATTA--AGTACTATCTTCATCTCCAG--TTCACTTG-ACACCAGCCTA----ACATTACC---TGAT-------ACCACCTAAA-ACT-TACCATCAT---------CATCTTTACCACCAACACCATCACCACTG---TTATCTTCATCATCATCACCAGCTTCA--GC--AG-CAGCAGCAT--ATATCTTCACCTATC--CAGTATTATC-TCCTTCTC-CAGTCTCATTGACACCATC-CTAAC-ATTACCTGATACCAGC-TTATACT-TACCAACATCATCAACACTGTGATACTCATCACCATCATCAGCA--GCAGCAGCAGCAGCATTAT--ATATCTTCACC--TATCCAGTATAACCTCCATCTCTAGTCCCATTGAC-CCAATTCTAAC-ATTACCTAATACCACCTTAAAC-TTACCATCTTGTCC---AT----ATACCAACATCATTATC---ATCATCATCAGGAGCAGCAGCAGCAGCATA-----TATCTTTACCTATCCAGTATTTTCTCCATCTCCAGTCCAATTGAC-CCAATTCTAAATTTACCTGATACCACCCAATACTTACAACCATCATCCTTATCACCAACATCATCATTAATGTTATTATCATCAACAGCAGCAGCATATATCTTCACTTATCCAGTATTTTTTCTCCATCTCCAGTCCATTTGACACCATTCT-GACATTACCTGATATCACCTTATACTTACCATCATCATCCTTATCATCTA-CATCCTCATCACTGTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTATATCTTCAACTA-TCCAGTATAATC-TCATTCTCCAGTCTCAATGATGCCATCCTAACATAACCTGACACAAGCTTATACTTACCAAC---AT-CATCAACACTG-----------------------ATCATCATCAGCAGTAGCAGCAGCATATATATTCATGTATCGAGTATT
gi|10 : tgtttctgaggaccgcatctccacgtacatgcgtaaaaattgATCG-ACATCGTA-TA----ACAATACT---TTATCGACATAGTCATTG-CA-AAC-TATTATCGA---------CATCGTCACTGCCAATGCCATTGCCACCG---TTTTCGACATCGTAATTGTCATCGTCATTGC--TG---ACGTTATTGACATTTTCATTGA----CACCATTATC-TCCATC-----G--TTATTGCCACCGTTATTGAT-ATTGTCA-ATATCA---TTG---T-TATCGACAGCGTCATTGCCAT-
gi|11 : ttATCATCATCATCG---TCGTTGTCGTCGTCGCCGCC-GNNNNN--NN--NN-NNNNNNNNN--NNNNNNNNNNNNNNN--CATTATTGTCATATTTATCACAGCATCATAATCATCATT-TTAAT-ATTAACT-ATACCGTGATCATA----ATCAATATCAT-ACCATTACCACAGTCATCATCATTATCGGTATAGCAGCAACATCAATATTAT--ATAGCAGCATC--tttcatt
gi|12 : CATTGTTGATTTCTTGA--TTAACTACTAGGCTGACATCTTAGATATGGTTGACTTCTGGGCTGGCATCTGATATATTGTTGGTTTATGGT------TTTACTCCCGGGTTGACTACTAGGATATGACTTAGAGGCTGACTTCTGG-----TACATTA-TTGATTTCTGAAACAACTTCTGGGAAATGGTTGACTTCTGGGCTGATATCTGG--TACATTGCTGATTTagaagacac
gi|13 : TCATCATCA---TC---TACAAA--TTCATGTTACCT--TCTAACATCATCTACA---TCATCAGC-----ATTAT--ATTCAACATCA-----TGATATCTTCCA-A-CATCTA-TATCATC-ACTATCAT-C--T--TCAATTT------CATGA-TATCTTCTAATATCA-ACATTATCATCTTCAACATCAT---G--ATAATC--T-TC-----CAAC--ATCATCTAAA---TCATCA-CC-ATCAT-C-TTCA----ACA-
gi|14 : ccttgaacaCAACAACATCAACACCACTA---TCA-----ACCATCAGCAATAGCACCA--GC--AG-CAGCACCAC---CACCGCCACCA--C--CACCGTTACC-TCCAAGAC-CACCCTCAC---CACAATC-TCAACCACCACC----ACCAAC---A-ACAATAACAACAACATCAACACCAC--TAC-CA--ACCATCATCAGCA--GCAGCAGTACCAGCA
gi|15 : TCATCATTACAACC-----CATAGCTTCATC---ATCAACAGCAGCATCAATAGCATTCTCATCAT-CATCAACATAA--GTGGC---AGTGACATTATTTCACA-----CCA----TCAGCA--GC-----ATCAATTC----CATTGT---A-----TA--------A--A-TC---ACCACC---ACCA---TCATCA--GT------CATCATCATTGTCATCAgc
gi|16 : t--------TCA---T---------CAT-CATTATCAGC-----AGCAGCATCTTTATCATTACTTTTTATCAT-TA---TCATTATTA
gi|16 : ATCATCAT---TATCAGCAGC---A-GCATCTTTATCtttttgttatcattatcattaccatgatgatggtgatggtgatggtgatgatcatgatgatacagtacgattattataa
gi|16 : tc--A--------TCATGAT---------CAT-CACCATCACC-----ATCACCATCATCATGGTAA----TGATAAT-GA---Tattactttttatcattatcattattatttttgttatcattatcattaccatgatgatggtgatggtgatggtgatgatcatgatgatacagtacgattattataa
gi|16 : tcatcatcattatcagcagcagcatctttatcattactttttatcattatcattattatttttgttATCATCATGATCATCACCATCACCATCACCATCATCATgatacagtacgattattataa
gi|16 : tcatcatcattatcagcagcagcatctttatcattactttttatcattatcattattatttttgttatcattatcattaccTTA-TA--A--------TAA---T---------CGTACTGTATCA--------TCATGATCATCACCATCA----CCATCAC-CA---TCATCATacagtacgattattataa
gi|17 : tcatcatcattatcagcagcagcatctttatcattactttttatcattatcattattatttttgttatcattatcattaccCACCGTTA----TCATCATACC---CCATCATCAG
gi|18 : cactgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntcGTTATCATCA--GT-----ATA-ATC--A-ATATTA----------TA--------A-TT-TC-----TATC---ATCA---TAACCATGAT------CATCATTATTGTCATCATCA--GC-A--------TCCTCAT-CATTAATAGTATTATtgctat
gi|18 : ggctgctaaatttaatatcgttCAGTA--T-AAT-CAATATT-ATAATTTCTATCATCATAACCATGATCATCATTATTGTCATCATCAGCATC--CTCATCtatt
gi|19 : ggctgctaaatttaatatcgttgttatcatATCGCTATCACTAGCTTTTTCGTCAACGGT--AGCATCAT-TTAC-ATCA--TTATTGTTA---TCGTCGTTGTCGGCGTCATCATCATCATCAAAATCATCAT---CATCAGCAGC---Aattaatagtattattatt
gi|2 : catcaccCATGTTTG-CTTCTGGAACTTGGTT----GGTTAACTTCTGGAACATGGTTGAATTCTGGA------------ACATGGTTGACTTCTGAAACATAGTTGACTTCTGGATAGACTTATTGGACAT--------AGCAGACTTCAAGGTAGATGCCTAAGTTGATTTATAGGTCGATTTCAGGGAAATAGTTGACTTTCAAATTGACTTCTGGAATATATT--TGACTTTGAATTCTTTGATGCCATATATAATATA----TAA-TGTTTGAACACACTGTTAAGACCATTTAAAA-----------------------ATACCAGTATTCTGTTTAGAGTTGTTGTTTTGCTACTATGTTAATGTCAGTAAAATAATGTCAATTGGTATGTTTACAATCTCATATAGAAAGGCTAAAACAATTCAATTAGAAAGATAAATA-TATCAGGAAGTATAGTCG---GACATTGTGTAACAGAAAACACAACATTTTGATT-ACACTC--ATCAAAATCAAAATGAGAT-----TACCTATTATCGAAATCTCGATTATCCCATCT-----------TC-ACCAACATGTAGATAATAT-TAGTCCAGTCCTGCAA-CCAATTCTTCATCATCA---TCCATTACACATCTTCA--TCACCTGATATATCTCCATCTTCAGTGTCATCGGT-----GTCATCCAT--AA---CACT---T-------------------ACTACCATC-ACA----T-T--T--CCA---T------CAT---CATCAT-TATGATCA-ACACTTTTATCATCAT-A--ATC--A--ATCACC--TATCAT---CAGT--ATCATCTGCAGTTTCATTG-AC-ACCATCC-TT-A----ACATTACCCGATACCTTCTT-ATCATTA-CA--A--------TCA---T---------TAT-CCTTAGCGCC-----AACATCATCATCACTGTAA----TCATCAT-CA---TCATCAGCAGCAGCA--AACATCTTC-TTGTGTCCA---GTAAT----ACCT-CCATC--TCCA-GTTCCATTGACACCATCCT-AGCATTA-CC----TAA-TACCTTTTTATCCTTACCATCATCATTTTATCACCAACATTATCATCATTAGCAT-A--TA-TAT-CTTTATCCATCCAGTATTATCTCCATCTCGAGTTCCATTGATGCTATTCTT-ACAGTACTT-GATACAACGTT-AT---CCTTACCATCATCATTCTGATCACCAACATCATCTTCAATGTAATCATCTCATCCGTCCAGTGTTATTTCCATTTCAAGTTTCATTGGTGCCATTCTAACATTACCTTTTCCC-ACTTTATCCCTACCATCATTTTTATCACCAACATGATCTTCAATGTAATCATCCTCATCAGCAGCATACATC-TCATCTGTCCAGTATTATTTCCATTTCCAGTTTCATTGGTGCCATTCTAACATTGCCTT-TTACCACTATATCCTTACCATTATCATTCTTATCACCAACATCATCACTATAATCATCATCACCATCAGCAGCAGTATACATCTTCATCCATCCATGATTATCTCCCAACTCAAGTATCGTTGACGCCATTCTTACATTACCCAATACCACCTTATTCTTA-GC--ATTATCATC------ATCACCAACATAG--A-CACTGCA---------AT--CATCATC---ATCAGCA---------------------GCATGTATC--TTCAT--GCATC--TTGT---ATTATGTC-CAT--CTCCAGTT-TTATTG--ACCGTATACC-ACTTTATAC-TTACCATC-----TGTATCCAT-A-TA-CCAAAATCCTC---ATCACTGTGATCATCAT------CATCATCATCATCAACAGCA--GC-AGCAGTATATCTTCATCCATCC--AGTTTTATCACCATGTCCAG--TCCCATTG-ACACCATCATA----GCATTACC---GTAT-------ATCACTT-TATACT-TACCATCTG---------TATCCATAT-ACCAACATCat
gi|20 : acactccttacctgaatctatacgttggcaatcagtggatcccgtatgtaaaactttcgaaggactgtgcttctgtttctgaggaccgtCCA-GCATCAC---CA----TC--------A-TAATA---ATCATC---ATCA---TCATAATCGT------TGTCGTCGTCGTAATGAACA--GC-CGCA-TATT--TTCAT---TTA--TATATTAACT
gi|21 : TTCTGGCACATGGTAGACTTCAGAA--TTGGCAT-----TTTATTTCTGTCACATGGTAGACTTCAGTATCG---------GCAT--TTCATTTCTGGCACAT-Ggatatatgattcagttacat
gi|22 : tgtttaatGTT-CAATTT--GC-----ATT-ATGTTT-AC--TAT---T-----TG--------AATA-T--------TC---AT-----TCGT-ATCAT------CATCATCATCATCATCAT-----C-GACA-T-TGTCTTCAT--A--------ATCATCTCCATgtagacttc
gi|22 : atgtAATATTCAT---TCGTATCATCATCATCATCATCATCATCGACATTGTCTTCATAATCATCTCgag
gi|22 : atgtgttcaatttgcattatgtttactatttgA-TC---ATCATC---ATCA---TCATCATCGA------CATTGTCTTCATAATCATCcatgag
gi|23 : atgtgttcaatttgcattatgtttactatttgaatattcattcgtatcAT--TACCATC---ATCAGCAGCAGCAtccatgag
gi|23 : tATTACCAT---CATCAGCAGC---A-GCATATTTATCATTGCATT-TTATtatttatcattgcattttatcattattataactgttgttattactatcattataatcattgttatcgttat
gi|24 : tCATCAGCATTAGCATTATCACAATCAT---CAT--CATCATCGATATCAACAGCAGCAGCA-TAGCcattattataactgttgttattactatcattataatcattgttatcgttat
gi|24 : CATTAGCATTATCACAATCA---TCATCATCATCGATATCAACAGCAGCA--GCATAGCCACCACCAC--AT-TCTACAAC-ATCAACAGCAcaccaccacattctacaacatcaacagcaga
gi|25 : catcagAGAAGTAGTAGTAGTAGCATGTGTT--GTCATTAACTTCATTATG---GTCATTTT-CATTATTCCATTT-TTATCG--CC-----ATT-ATTGT---CATTAC---C-----ga
gi|26 : TTCTTAACCTAATCAATACA--A-TCATCAACACCATCACAATCACTATAACCAA---CAT--CAGCATT---ATCATCAGCAGCAGCAACAGCAGAAGatc
gi|27 : t--------TTA---T---------TAT-CATTATCAGC-----ATCATCATCATCATAATAA----TCACCAT-CA---TCATAATCA
gi|28 : cattttttgcttATAC-ATCATAATCATTATGATCTTGATC---GT----G-------ATAATCACA---ATCATCATCAGCAGCAACAGCAGCAcc
gi|29 : TTATCATTATCATCATGCTCAGCATCATCACTATCATGAAAATCATTTta
gi|3 : ttaTTCTAGGTTGATCTCTGGGACATGGTTGATCTCTGGG------------ACATGGTTGATTTCTGGGACAT-G-----------GTTGACTTCTGGGATAC--------AGCCGACTTCT-----------TT-GTTGACATCTGAGTCAACTTCTGGGACATGGTTGACTTCTGAATTAACTACTGGAATATATC--TGA---------------TGCCGTATAAAATATACAGTTAAGTTTTTAAA---ACTGTTAAGACCAATTAAAACTACATA--------TCAGGAAAATACCAGAATACTGTTTA-AGTT-TTGTTTTGCTACTATGTTAGTGTCGGTACAATAACGCCAATAAGTATGTTTGTAATCTTATGTAGAGA--CTAGAGCAATTTAATTACAAAGATAA--A-TATTATGAAGAATGG--A---GATATTattaatattaatatc
gi|31 : catactccttacctggatctatacctggaactataggtatgtggccaatcagtggatcccaaatgtaaagctttcaaatgaatggacttctgtttctgaggatcgtct--A--------TCG---T---------CGT-CGTGGTCGTCCGGTTGTCGTTGTCGTCGTCGTCA----TTATCAT-CA---TCATCATCAGC
gi|31 : TC---GTTG---TCGTCGTCGT------CATTATCATCATCATCATCA--GC-
gi|32 : atcgtcgtcgtggtcgtccggttgAGCA--GCAGCAGCAGCATCATTAT--
gi|32 : CAGCAGCAGCAGCATCA--T--TATCCTCGAT--GT----TATTATCcctcgatgttattatcataaaattataattatcact
gi|33 : agTCGTCGTCGTCG---TCGTTGTTGTCATCATCATCAGCAACA--GC--AG-CAGCAGCAataaaattataattatcact
gi|4 : gCAACAGAAGCAGTAGATATCTTCATCCGTCCAGTA--TTATATCCTTCTCGGGTCCCATTGACACCATCCTAG-CATGACTTTATATCACTTTATACTTACCATCTGTATCCATAT-ACCAA-CATCCTCATCACAGT------GNNNNNNNNNNNNNNNNNNNNNNNNNACAACAACAACAGCAGCAGAAGATATCTT-AATCAGTCCAGTATTATC-TCCATCTGCAGTCCCATTTACACCATCTGAACATAACCGTATATCACTTTATACTTACCATCTGTATCCAT--ATACTAGCATTCTTATGACTGTGATCATCATCATCATCAACAATAACAGAAGTATATACCTTCATCCGTCCAGTATTg
gi|5 : a-CACCA-TTACCATC-ATT----T-TAATGACCA---TACTGATCATTCTCATCTT-TACTGTCAGATGCTCT-A-CATAATCATCAGC--A--G-CAGCAGTAACAG---CAGC--ATTATNNNNNNNNNNNNNN-NN-NNNNN-N-NN-N----NNN-NNNNNNNNNNNNNNNN-NNNNNNN-NN--NNNNNNTTGTCA---G---------GAG-CAGCAGCAGC-----AGCATGATCAACATCTTGA----TCAACAT-CA---TTATCATCATTATCATTATCA---CTGTTATGACCA----TAATGATCATTT-TCATC--TTTACA-TC--TTGTC-----CCT-GG--TTG-AAATCTCAA-TATC--ATCATCATTATCATCATCAT-----------CATCAGCAGCAGCAGTGT-AACCACCAT-CTTAATCtatccatctcgagtcccattgacacca
gi|5 : cattatcattatTCAGGA--GCAGCAGCAGCAGCATGATCAACATCTTGATCAACATC----ATTAT---CATC---ATTATCATTATCACTG-TTATGACCATAA--TGAT--CATTTTCATC-TTTACATCTTGTCCCTGGTTGAAATCTCAATATCATCATCATTATCATCATCATCATCAGCAGCAGCAGTGTAACCACCATCTTAATCattatcatca
gi|6 : cattatcattatcaccattaccatcattttaatgaccatactgatcattctcatctttactgtcagatgctctacataatcatcagcagcagcagtaacagcagcattatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnttgATCTCAACCATCAGCAACAGCTGCTTTCTATTATCAAC--ATCATCACTACTTTATC-TTTCTA-GTCATCAGC-ATGATCTATT----T-T--TA-TCA---A------CAT---CATCAT-TAC-------CACTAT-ATCATCATCATCATC--ATTATCGTC--C-TCATAAGCAGCTGATTATGTGTATTTGTATTA-GCTGCTAT----T-A----A--------------TTTTG-TTCATAAACATCA--------TCA---T---------CTT-CATTATGACT-----AT-ATCATCATCATTGTCA----TCATCAT-CATCCTCCTCATTAGCAGCT--GA--------TTATGTGTATTTGTATT----AGCTGCTATTAATTTT-G-TTCATAAACATCATCATCATCATTATGA----C---TATATCATCATCATTGTCATCATCAT-----------CCTCattatcatca
gi|7 : ATTGTTAT-----GTC-ATCATA-A--TTAT---CATGATTG--------A-CA-TCGT-AATGTCGTAATCA---TTATCATCGCTGGTTACATTATCATATTCATCATCACTGCTAACA-C-CATCGTCATCG--TA--A-TATCATAGGCATCATCAAAATTACAGTGTACATCAACTTAGACAACAGTGTCAGATT-T-------ATTA--T-TA-ATTGCATTATCATAAGTAATGACATCGTTATCATCGACATCATCACCAATATATTCATTATCGTCATAATAATTAGCATCG--TC--AA-TAACActcatt
gi|7 : attctcaaagttattggtATTATCATC-GCT----GGT--T--ACA---T------TAT---CATATT-CATCATCA----CTGCTAACACCATCGTCATCGTA--AT-------ATCAT---AGGC--ATCATC-AAAATTACAGTGTAC-ATCAA-C-TT-AGACAACAGTGTCAGAT---TTATTATTAATTG-CATTA--------TCA---TAAGTAATGACAT-CGTTATCATC-----GACATCATCACCAATATAT----TCATTAT-CG---TCATAATAATTAGCA--tcg
gi|8 : attctcaaagttattggtattgttatgtcatcataattatcatgattgacatcgtaatgtcgtaatcACAATTTAATTATGAAGATAGATACTGT--GAAAGAAACGT-AAATGGCATTAT-TAA-AGAAAGCA-----TTTT-ATTGACACTCTTGACGAGA--AAAA----ATTAACTTACCTATTATCCAAGTCTTGGCTACCCCAACT-----------TT-ATCAATATTTGAATGACTTCTAACCCAGG------ATCCGATTCTTTACTATCACACTCCATCATACATCTTTA--TCTACTGGCTTATTTCTATCTTCAGTTTCATCGAT-----GTCATCCAT--AACATTACT---TGtcgtcaataacatcg
gi|9 : TTTCA-TC--ATCAACACCACCATTATCATCAACAATATCATCACCAACATCATTAACAA--CACCATT---GTCAACAGCAACAACAANNNNNNNNNNNNNNNNNNNN--NNNNN--NNNNN--NNNN---NNNNNNNN-NNN--NNNNNNNN-NNNNNN--NN-----NNN-NNNNNN-NNNNNNN---N-----NGCAACAACAA-TT-TC---AGCATC---ATTA---TCATCAACAC------CACCACCATCATCATCAT
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|30 ): TTGTCATTATTATCATTATTGTTATCAGTAATATCCTCTTTTTTTCCATCTCGCCCTCCTCCTCCT
Alignments
lowQualScore : 111111 22222 3333 11 2222222 22222222 11111111111111111 222222 11 2 22222222 6666666666666 1 1 11111 1 11 11 666666666666 555555555 222 222222 55555555555555555 22222 222222 111 222 2222222222222222 333333333333333333333333333 11111 11 111111111 111111111111111111111 222222222 2222 2222 1 11 1 1 2222222 1 11 44444444444 2222222 1 22 1 111 1 11 44 222 1 11 222 111 22222 1 11111 1111 22222222222 111 2222222222222222 111 11111 5555555555555555555555555555555555555555555 22222222222222222 1111111 333333333 4444444 2222 11 2222 222 1 2222 1 1 11 55555555555 11 33 11 11 11 1 333333 222 11111 1 11 111 1 88888888888888888888 22222 22 111 222 1 88888888888888888888888888888888 1 1 222 1 11 77777777777777777777777
lowQualScore : 1 3 222222 1 33333 1 1 1 5555 11 1 8 6666666 4 1 8 0 99999999 1 99999999999999999 0 333333 1 0 0 11 6 6 0 00000000 7 6 6 9999999999999 2 6 0 0 0 6 1 3 0 6 0 44444 6 6 6 6 3 88 0 7 11 7 6 1 888888888888 1 6 777777777 0 333 1 22 777777 2 22222222222222222 00 3 0 8 8 11111 333333 444 1 000 99 1 7 3 2 1111111111111111 99 55 1 1 1 0 8888 999999999999999999999999999 22222 1 5 22 444444444 0 3 4 666666666666666666666 1 0 1 7777 666 666 7777 999999999 2 0000 1111 0 0 33 2 2 33 0 2 9999999 0 88 1 77777777777 2222222 0 0 2 6 1 1 77 0 111 0 3 66 5 22 1 1 0 9999 00 33 111 1 1 1 5 22 1 0 1 0 0 6 44 6 3 00 555 0 0 0 1 444 00000 3 7 5 1 1 1 1 1 1 2 1 44444 2 0 8888 1 3 5 77777777777 77 5 0 000 2 0 777 88888 0 66 1 2222222222222222 1 888 99 5 2 3 0 22222 5 3333333333333333333333333333333333333333333 1 99999999999999999 5555555 1 3 999999 111111111 2 2 888 1 3333333 2222 44 1 6 1 66 1 1 0 22 11 2 1 0000 1 000 1 0 1 0000 2 2 8888 0 0 0 99 66666666666 1 1 33 1 2 77 7 7 11 33 88 5 2 444444 111 1 1 1 77777 1 5 1 77 222 3 1 66666666666666666666 3 66666 1 77 1 1 999 1 1 2 22 111 1 1 22 1 5 1 1 66666666666666666666666666666666 1 5 5 1 22 1 1 1 2 22 1 1 1 111 5 88 77777777777777777777777 1 1 1 1
lowQualScore : . . ...... . ..... . . . .... .. . . ....... . . . . ........ . ................. . ...... . . . .. . . . ........ . . . ............. . . . . . . . . . . . ..... . . . . . .. . . .. . . . ............ . . ......... . ... . .. ...... . ................. .. . . . . ..... ...... ... . ... .. . . . . ................ .. .. . . . . .... ........................... ..... . . .. ......... . . . ..................... . . . .... ... ... .... ......... . .... .... . . .. . . .. . . ....... . .. . ........... ....... . . . . . . .. . ... . . .. . .. . . . .... .. .. ... . . . . .. . . . . . . .. . . .. ... . . . . ... ..... . . . . . . . . . . . ..... . . .... . . . ........... .. . . ... . . ... ..... . .. . ................ . ... .. . . . . ..... . ........................................... . ................. ....... . . ...... ......... . . ... . ....... .... .. . . . .. . . . .. .. . . .... . ... . . . .... . . .... . . . .. ........... . . .. . . .. . . .. .. .. . . ...... ... . . . ..... . . . .. ... . . .................... . ..... . .. . . ... . . . .. ... . . .. . . . . ................................ . . . . .. . . . . .. . . . ... . .. ....................... . . . .
lowQualScore : 0 2 444444 4 22222 0 4 4 8888 00 0 0 8888888 2 0 0 8 00000000 0 00000000000000000 8 000000 0 8 8 00 4 7 7 33333333 3 7 7 7777777777777 0 7 7 7 7 7 0 2 0 5 8 22222 7 7 7 7 3 33 7 3 00 3 7 0 333333333333 0 7 000000000 7 333 0 22 000000 5 22222222222222222 55 8 8 0 0 00000 000000 000 0 000 00 0 3 5 5 3333333333333333 22 00 0 3 0 8 7777 555555555555555555555555555 00000 0 0 22 555555555 5 6 1 000000000000000000000 0 4 0 7777 444 444 7777 444444444 5 0000 2222 2 0 88 8 5 55 0 5 0000000 0 55 0 55555555555 8888888 0 2 5 7 0 0 77 0 000 0 2 88 0 66 0 0 2 0000 33 00 000 0 0 0 5 00 0 7 0 7 7 7 33 7 7 33 000 7 7 7 0 000 55555 7 3 0 0 0 0 0 0 0 5 0 00000 5 2 5555 4 6 7 44444444444 99 7 3 000 7 7 000 44444 2 88 0 2222222222222222 7 333 22 0 2 6 5 55555 0 5555555555555555555555555555555555555555555 4 44444444444444444 2222222 1 2 888888 222222222 5 5 777 0 3333333 3333 77 0 7 4 00 4 0 8 22 00 2 0 2222 0 555 0 0 0 5555 5 5 0000 0 0 2 88 88888888888 2 0 88 0 0 00 3 3 00 88 33 0 5 000000 000 0 0 0 00000 0 0 0 55 333 3 0 00000000000000000000 7 00000 0 55 0 0 555 0 0 5 00 000 0 0 00 0 0 0 0 00000000000000000000000000000000 0 0 0 0 00 0 0 0 5 00 0 0 0 000 0 00 00000000000000000000000 0 0 0 0
consensus : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTCTGGNACATGGTTGACTTCTG--GA--TCGGCTT-CTAGGTTNACTTCTGGGACATGGTTGACTTCTGGA--GACAT--GGTTGATTTCTGGNACAT-G--TT-NACTTCCGGGTNGACTTCTG-GGACATA--------GCNGACTTCTAGGTAGATGCNTTAG--TTGATTTCTG------GGTCGACTTCTGGGAAATGGTTGACTTCCGAATTGACTTCTGGAATATATT--TGACTTT-AATTCTTTGATGCCGTATATAATATACAGTTAAGTTTTTAAACACACTGTTAAGACCATTTAAAACTACATA--------TCAG-AAAATACCAGTATTCTGTTTAGAGTTGTTGTTTCGCTACTATGTTAATGTCGGTACAATAACGTCGATTGGTATGTTTACAATCTCATATAGAGAGGCTAAAACAATTTAATTANAAAGATAAATA-TATCAGGAAGAATAGTCA--GACATTGTGTAACAGAAAACACAACATTTTGATT-ACACTC--GACGAAATCAAAATGAGATTAACTTACCTATTATCCAAATCTCGATTATCCCATCTTCACCAA------------CATGTAGATAATNTCTAGTCCAG------NA-CCGATTCTTCATCATCA---TCCATTACACATCTTCATCACCTGATTTATCTCNATCTTCAGCGTCATCGGC-----GTCATCCATAACATCACT---TGAT-CTTCCA-G-CACCAACTACCATC-ACTT-T--T--CCAT------CAT---CATCNTTACGATCA-ACACTNTTATCATCATCATCATC--A--ATCA-CC--T-ATCATCGGC--ATCATCTGCAGTTTCATTG-AC-ACCAT-C-TTA----ACA-T-GCCNGATACCTTCTT-TTCAT-TACA--ATCAT---------CAT-CGTTAT---------C---ACC-----ANCATCATCATCATCGTNA----TCATCAT---CA---T----CATCATCAGCAGCA--AACAC--TCTTGTGTCCA---GTAAT----ACCT-CCATC--TCCAGNTCCATTGACACCATCCT-AGCATTA-AA----CAA-TACCTTATCATCNTTACCATCATCAT-----------CATCAGCAGCAGCAGCAT-A--TA-TAT-CTTGATCCGTCCAGTATTATCCCCATCTCNAGTTCCATTGACGCCNTT-CTTACAGT-AC-T-G-ATACAACGTTATCCTTATCATCATCATCATNATCATCANCATCATCATCATC---GTAATCATC-TCATCCGTCCAGTGTTATTTCCATTTCAAGTTTCATTGGTGCCATTCTAACATTACCTTTT-CCCACTTTATCCCTACCATCATTTTTATCGCCAACATGATCTTCANTGCAATCATCNTCACCANCAGCATACATCTTCATCCGTCCANNGTTATCTCCATCTCNAGTTTTATCGNCGCCGTTCTAACATCGCCTTNTACCACCTTATTCTTAC--TCGTCGTTCTTATCGCCAACATCATCACTANAATCATCAT---CATCAGCAGC---ATGCATCTTCATCCGTCCATTATTATCTCCCANCTCNAGTNCCGTTGACGNCANCCTNACATTACCCGATACCANCTTATTCTTA-CC--ATCAACACCA---TCATCACCAACATCATCATCA-CTACAA--TCAT-----CAT--C-ATCATC---ATCAACAGCAGCAGCA--ATAGCAGNAGCAGCATG-TATCTTCAT--GCGTC--TAGT---ATTATCTC---CAT--CTCCAGTT-TTATCGGC-----ATCA-TTCTA-A------CATTAC---C-TG--------A-TA-T-CANCATCATCAT----------C------ATCA------TCGTCATCATCATCGTCATCATCAGCAGCA-TATNTCTTCATCCATTA--AGTATTATCTCCATNTCCAGTCCNATCGACACCGTCATAACATTACCTTAT-------ATCACTT-NA-ACTTACCATCGNCATCNTTACCACCAACGTCATCGCCACCGTCGTCGTCGTCGTCATCGCCAGCGNCA--GCAGCAGCANCAT--ACATCTTCACCGATCCACCATTATC-TCCNTNTC-CAGCNTCATTGCCACCATC-TTAAC-ATTACCT-ATACCA-GCTTATACT-TATCAACANCAT--CANCACCGC--TACTCATCACCATCATCAG--CAGCAGCAGCAGCAGCATTAT--ATATCTTCATC--CATCCANTATAACCTCCATCTCTANTNCCATTGNCACCGATTNTGACCATNACCTGATACCATCTTAATC-TTANCATCTTGTCC---GT----AT-C-CAA---CATCATCATNATCATCATCAGCAGCAGCAGCAGCAGCGTAACCACCATCTTNACCATTATCCAGTATTTTCTCCATCTCCAGTCCAATTGACCCAATTCTAAATTTACCTGATACCACCCAATACTTACAACCATCATCCTTATCACCAACATCATCATTAATGTTATTATCATCAACAGNAGCAGCANATATCTTCACCCGTCCAGTATTTTNTNTCCNTCTCCGGTCCNNTTGACACCATCCTAGACATNACCTNATATCACCTTATACTTACCATCNNCATCCNTATCACCNACATCCTCATCACNGTT-----GNNNNNNNNNNNNNNNNNNNNNNNNNACAACAACAACAGCAGCAGAANATATCTTCAACCAGTCCAGTATNATCTCNNTCTNCAGTCCCANTNACGCCATCCGAACATAACCNNACACNANCTTATACTTACCANCTGTATCCATCAACACTGGCATTCTTATGACTGTGATCATCATCATCATCAGCAGTAGCAGNAGCATATACNTTCATNCGTCNAGTATTA
Reference ( family-1427 ) : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTCTGGNACATGGTTGACTTCTG--GA--TTGGCTT-CTAGGTTNACTTCTGGGACATGGTTGACTTCTGGA--GACAT--GGTTGATTTCTGGNACAT-G--TT-TACTTCCGGGTNGACTTCTG-GGACATA--------GCNGACTTCTAGGTAGATGCCTTAG--TTGATTTCTG------GGTCGACTTCNGGGAAATGGTTGACTTCCGAATTGACTTCTGGAATATATT--TGACTTT-AATTCTTTGATGCCGTATATAATATACAGTTAAGTTTTTAAACACACTGTTAAGACCATTTAAAACTACATA--------TCAG-AAAATACCAGTATTCTGTTTAGAGTTGTTGTTTCGCTACTATGTTAATGTCGGTACAATAACGTCGATTGGTATGTTTACAATCTCATATAGAGAGGCTAAAACAATTTAATTANAAAGATAAATA-TATCAGGAAGAATAGTCA--GACATTGTGTAACAGAAAACACAACATTTTGATT-ACACTC--GACGAAATCAAAATGAGATTAACTTACCTATTATCCAAATCTCGATTATCCCATCTTTACCAA------------CATGTAGATAATNTCTAGTCCAG------NA-CCGATTCTTCATCATCA---TCCATTACACATCTTCATCACCTGATTTATCTCNATCTTCAGCGTCATCGGC-----GTCATCCATAACATCACT---TGATACTTCCA-A-CACCAACTACCATC-ACTT-T--T--CCAT------CAT---CATCNTTACGATCA-ACACTNTTATCATCATCATCATC--A--ATCA-CC--T-ATCATCAGC--ATCATCTGNAGTTTCATTG-AC-ACCAT-C-TTA----ACA-T-GCCCGATACCTTCTT-TTCAT-TACA--ATCAT---------CAT-CGTTAT---------C---ACC-----ANCATCATCATCATCGTNA----TCATCAT---CA---T----CATCATCAGCAGCA--AACA---TCTTGTGTCCA---GTAAT----ACCT-CCATC--TCCAGCTCCATTGACACCATCCT-AGCATTA-AA----CAA-TACCTTATCATCNTTACCATCATCAT-----------CATCAGCAGCAGCAGCAT-A--TA-TAT-CTTGATCCGTCCAGTATTATCCCCATCTCNAGTTCCATTGACGCCNTTCCTTACAGT-AC-T-G-ATACAACGTTATCCTTATCATCATCATCATGATCATCANCATCATCATCATC---GTAATCATC-TCATCCGTCCAGTGTTATTTCCATTTCAAGTTTCATTGGTGCCATTCTAACATTACCTTTTCCCCACTTTATCCCTACCATCATTTTTATCGCCAACATGATCTTCANTGCAATCATCNTCACCANCAGCATACATCTTCATCCGTCCANNGTTATCTCCATCTCNAGTTTTATCGNCGCCGTTCTAACATCGCCTTGTACCACCTTATTCTTAC--TCGTCGTTCTTATCGCCAACATCATCACTANAATCATCAT---CATCAGCAGC---ATGCATCTTCATCCGTCCATTATTATCTCCCANCTCNAGTNCCGTTGACGNCANCCTNACATTACCCGATACCANCTTATTCTTA-CC--ATCAACACCN---TTATCACCAACATCATCATCA-CTACAA--TCAT-----CAT--C-ATCATC---ATCAGCAGCAGCAGCA--ATAGCAGNAGCAGCATG-TATCTTCAT--GCGTC--TAGT---ATTATTTC---CAT--CTCCAGTT-TTATCGGC-----ATCA-TCCTA-A------CATTAC---C-TG--------A-TA-T-CANCATCATCAT----------C------ATCA------TCGTCATCATCATCGTCATCATCAGCAGCA-TATNTCTTCATCCATTA--AGTATTATCTCCATCTCCAGTTCCATTGACACCANCNTAACANTACCTTAT-------ATCACTT-TA-ACTTACCATCGNCATCNTTACCACCAACATCATCGCCACCGTCGTCGTCGTCGTCATCGNCAGCANCA--GCAGCAGCANCAC--ACATCTNCACCGATCCANCATTATC-TCCNTNTC-CAGCCTCATTGNCACCATC-TTAAC-ATTACCT-ATACCA-NCTTATACT-TATCAACANCAT--CANCGCCAC-ATACTCATCACCATCATCAG--CAGCAGCAGCAGCAGCATTAT--ATATCTTCATC--CATCCAGTATNACCTCCATCTCTANTNCCATTGNCACCGATTNTGACCATNACCTGATACCATCTTAATC-TTANCATCTTGTCC---GT----AT-C-CAA---CATCATCATCATCATCATCAGCAGCAGCAGCAGCAGCGTAACCACCATCTTNACC--TATCCAGTATTTTCTCCATCTCCAGTCCAATTGACCCAATTCTAAATTTACCTGATACCACCCAATACTTACAACCATCATCCTTATCACCAACATCATCATTAATGTTATTATCATCAACAGNAGCAGCANATATCTTCACCCGTCCAGTATTTTNTNTCCNTCTCCGGTCCNNTTGACACCATCCTAGACATNACCTNATATCACCTTATACTTACCATCNNCATCCNTATCACCNACATCCTCATCACNGTT-----GNNNNNNNNNNNNNNNNNNNNNNNNNACAACAACAACAGCAGCAGAANATATCTTCAACCAGTCCAGTATNATCTCNNTCTNCAGTCCCANTNACGCCATCCGAACATAACCNNACACNANCTTATACTTACCANCTGTATCCATCAACACTGGCATTCTTATGACTGTGATCATCATCATCATCAGCAGTAGCAGNAGCATATACNTTCATNCGTCNAGTATTA
gi|1 : TTCTGAGGAC------------CGCATCTCCACGTACATGCGTAAAAATTG--TTCTGAGATATGGTTGACCTTT----AA--GTCGACTTCTGTGTTTACTTCTGGAACATGGT--TGATTT
gi|1 : tgtTTCTGAGATATGGTTGACCTTTA--AG--TCGACTT-CTGTGTTTACTTCTGGAACATGGTTGATTTCTGAA---ACAT--GGTTGACTTCTGGAACAT-G--TT-TTTTTCTGGATAGACTTCTG-G-ACATA--------GCAGACTTCTAGATAGATGCCTTAG--TTGATTTCTT------GGTCGATTTCAGGGAAGTGGTTGACTTTCAAATTGACTTCTGGAATATATT--TGACTTTCAATTCTTTGATACCATATATAATATACAAT---GTTT--AAACACACTGTTAAGACCATTTAAAACTACATAATATTTTATCAGTAAAATACCTGTATTCTTTTTAAAGTTGTTGTTTCACTACTATGTTAATGTCGGTACAATTATGTTGACTGGTATGCTTACAATCTCATATAGAGAGGCTAAAACAATTTAATTAGAAAGATAAATA-TATCAGGAAGAATAGTCA--GACATTGTGTAACAGAAAACACAACATTTTGATT-ACATTC--GACAAAATCCTATTAAGATTAACTTA----TTATCCAAATCTCGATTATCCCATCTTCACCAACAGCTTCACCAACATGTAGATAATGTCCAGTCCAG------CAACCAATTCTTCATCACCA---TCCATTACACATCTTCATCACCTGATTTATCTCAATCTTCAGTGTCATCGGT-----GTCATCCATAACATTACC---TGATACTTCCACA-CACTAACTACCATC-ACTT-T--T--CCAT------CAT---CATCCTTATGATCA-ACACTTTTATCATCATCATCATC--A--ATCA-CC--T-ATCATCAGT--ATCATCTGCAGTTTCATTG-AC-ACCAT-CCTTA----ACAAT-GCCCGATACCTTCTT-TTCAT-TGCA--ATCAT---------CAT-CCTTAT---------C---ACC-----AACATCATCATCACTGTAA----TCATCAT---CA---T----CATCATCAGCAGCA--AACA---TCTTGTGTCCA---GTAAT----ACCT-CCATC--TCCAGCTCCATTGACACCATCCT-AGCATTA-AA----CAAATACCTTATTATCCTTACAATCATCAT-----------CATCAGTAGCAGCAGTAT-A--TA-TAT-CTTGATCCGTCCAGTATTATCCCCATCTCCAGTTCCATTGACACCTT--CTTACAGT-AC-TTG-ATACAACGTTATCCTTACCATCATCATTATGATCACCAACATCATCATCACT---GTAATCATC-TCATCCGTCCAGTGTTATTTCCATTTCAAGTTTCATTGGTGCCATTCTAACATTACCTTT--CCCACTTTATCCCTACCATCATTTTTATCGCCAACATGATC---ACTGCAATCATCATCACCATCAGTATACATCTTCATCCGTCCATGGTTATCTCCAACTCAAGTATTATTGACACCATTCTAACATTTCCCGGTACCACCTTATTCTTAC--TCATCATTCTTATCACCAACATCTTCACTGCAATCATCAT---CATCAGCAGC---ATGTATCTTCATGCGTCTAGTATTATCTCC-ATCTCCAATTCTATTGACAACAACCTAACATTACCAGATACCAGCTTATTCTTA-CC--ATCAACAACT---TTATCGCCAACATCATCATCA-CTGCAA--TCAT-----CAT--C-ATCATT---ATTAGCAGCAGCAGCA--GTAGCAGAAGCAGCATG-TATCTTTAT--GTGTC--TAGT---ATTATCTC---CAT--CTCCAGTT-TTATTGAC-----AGCA-TCCTA-A------CATTAC---C-TG--------A-TA-C-CACCTTCATCAC----------C------ATCA------CTGTTATCACCATCATCATCATCAGCAGCA-TATCTCTTCACCTATTA--AGTACTATCTTCATCTCCAGTTCACTTGACACCAGCCTAACATTACCTGAT-------ACCACCTAAA-ACTTACCATCATCATCTTTACCACCAACACCATCACCACTGTTATCTTCATCATCATCACCAGCTTCA--GCAGCAGCAGCAT--ATATCTTCACCTATCCAGTATTATC-TCCTTCTC-CAGTCTCATTGACACCATC-CTAAC-ATTACCTGATACCA-GCTTATACT-TACCAACATCAT--CAACACTGTGATACTCATCACCATCATCAG--CAGCAGCAGCAGCAGCATTAT--ATATCTTCACC--TATCCAGTATAACCTCCATCTCTAGTCCCATTGAC-CCAATTCTAA-CATTACCTAATACCACCTTAAAC-TTACCATCTTGTCC---AT----ATAC-CAA---CATCATTATCATCATCATCAGGAGCAGCAGCAGCAGCATA-----TATCTTTACC--TATCCAGTATTTTCTCCATCTCCAGTCCAATTGACCCAATTCTAAATTTACCTGATACCACCCAATACTTACAACCATCATCCTTATCACCAACATCATCATTAATGTTATTATCATCAACAGCAGCAGCATATATCTTCACTTATCCAGTATTTTTTCTCCATCTCCAGTCCATTTGACACCATTCT-GACATTACCTGATATCACCTTATACTTACCATCATCATCCTTATCATCTACATCCTCATCACTGTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTATATCTTCAACTA-TCCAGTATAATCTCATTCTCCAGTCTCAATGATGCCATCCTAACATAACCTGACACAAGCTTATACTTACCAAC---AT-CATCAACACTG-----------------------ATCATCATCAGCAGTAGCAGCAGCATATATATTCATGTATCGAGTATTActgaaacatggttgacttctggaacatgtttttttctggatagacttctggacatagcagacttctagatagatgccttagttgatttcttggtcgatttcagggaagtggttgactttcaaattgacttctggaatatatttgactttcaattctttgataccatatataatatacaatgtttaaacacactgttaagaccatttaaaactacataatattttatcagtaaaatacctgtattctttttaaagttgttgtttcactactatgttaatgtcggtacaattatgttgactggtatgcttacaatctcatatagagaggctaaaacaatttaattagaaagataaatatatcaggaagaatagtcagacattgtgtaacagaaaacacaacattttgattacattcgacaaaatcctattaagattaacttattatccaaatctcgattatcccatcttcaccaacagcttcaccaacatgtagataatgtccagtccagcaaccaattcttcatcaccatccattacacatcttcatcacctgatttatctcaatcttcagtgtcatcggtgtcatccataacattacctgatacttccacacactaactaccatcacttttccatcatcatccttatgatcaacacttttatcatcatcatcatcaatcacctatcatcagtatcatctgcagtttcattgacaccatccttaacaatgcccgataccttcttttcattgcaatcatcatccttatcaccaacatcatcatcactgtaatcatcatcatcatcatcagcagcaaacatcttgtgtccagtaatacctccatctccagctccattgacaccatcctagcattaaacaaataccttattatccttacaatcatcatcatcagtagcagcagtatatatatcttgatccgtccagtattatccccatctccagttccattgacaccttcttacagtacttgatacaacgttatccttaccatcatcattatgatcaccaacatcatcatcactgtaatcatctcatccgtccagtgttatttccatttcaagtttcattggtgccattctaacattacctttcccactttatccctaccatcatttttatcgccaacatgatcactgcaatcatcatcaccatcagtatacatcttcatccgtccatggttatctccaactcaagtattattgacaccattctaacatttcccggtaccaccttattcttactcatcattcttatcaccaacatcttcactgcaatcatcatcatcagcagcatgtatcttcatgcgtctagtattatctccatctccaattctattgacaacaacctaacattaccagataccagcttattcttaccatcaacaactttatcgccaacatcatcatcactgcaatcatcatcatcattattagcagcagcagcagtagcagaagcagcatgtatctttatgtgtctagtattatctccatctccagttttattgacagcatcctaacattacctgataccaccttcatcaccatcactgttatcaccatcatcatcatcagcagcatatctcttcacctattaagtactatcttcatctccagttcacttgacaccagcctaacattacctgataccacctaaaacttaccatcatcatctttaccaccaacaccatcaccactgttatcttcatcatcatcaccagcttcagcagcagcagcatatatcttcacctatccagtattatctccttctccagtctcattgacaccatcctaacattacctgataccagcttatacttaccaacatcatcaacactgtgatactcatcaccatcatcagcagcagcagcagcagcattatatatcttcacctatccagtataacctccatctctagtcccattgacccaattctaacattacctaataccaccttaaacttaccatcttgtccatataccaacatcattatcatcatcatcaggagcagcagcagcagcatatatctttacctatccagtattttctccatctccagtccaattgacccaattctaaatttacctgataccacccaatacttacaaccatcatccttatcaccaacatcatcattaatgttattatcatcaacagcagcagcatatatcttcacttatccagtattttttctccatctccagtccatttgacaccattctgacattacctgatatcaccttatacttaccatcatcatccttatcatctacatcctcatcactgttnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntatatcttcaactatccagtataatctcattctccagtctcaatgatgccatcctaacataacctgacacaagcttatacttaccaacatcatcaacactgatcatcatcagcagtagcagcagcatatatattcatgtatcgagtatta
gi|10 : tgtttctgaggaccgcatctccacgtacatgcgtaaaaattgATCGACATCGT-ATAACAATACTTTATCGACATAGTCATTG-CA-AACTATTATCGACATCGTCACTGCCAATGCCATTGCCACCGTTTTCGACATCGTAATTGTCATCGTCATTGCTG--ACGTTATTGACATTTTCATTGA--CACCATTATC-TCCAT-------CGTTATTGCCACCGTTATTGAT-ATTGTCA-ATATCA---TTG---T-TATCGACAGCGT--CATTGCCA
gi|11 : ttATCATCATCATCGTCGTTGTCGTCGTCGCCGCC-GNNNNN--NNNNNNNNNNNNN--NNNNNNNNNNNNNNNCATTATTGTCATATTTATCACAGCATCATAATCATCATT-TTAAT-ATTAACT-ATACCGTGATCATA----ATCAATATCATACCATTACCAC---AGTCATCATCATTATCGGTATAGCAGCAACATCAATATTAT--ATAGCAGCATC--ttttcatt
gi|12 : CATTGTTGATTTCTT--GA--TTAACTA-CTAGGCTGACATCTTAGATATGGTTGACTTCTGGGCTGGCATCTGATATATTGTTGGTTTAT-GGTTT-TACTCCCGGGTTGACTACTA-GGATATGACTTAGAGGCTGACTTCT-GGTA----CATTA---TTGATTTCTG------AAACAACTTCTGGGAAATGGTTGACTTCTGGGCTGATATCTGG--TACATTGCTGATTTagaagacac
gi|13 : AACATCATCATCATCTACAAATTCATGTTACCTT--CTAACATC---ATCTACATCATCAGCATTATATT--CAACATCATGATATCTTCCA--ACATC--TA-T---ATCATCACTATCAT--CTTCAATT-TCAT-GAT-----ATC--TTCTA-ATATCAACATTAT---C-----------A-TC-TTCAACATCATGATAATCTTCCAAC------ATCA------TCTAAATCATCACCATCATCTTCAACA
gi|14 : ccttgCAACAACATCAACACCACTATCAAC-----CATCAGCAATAGCACCA--GCAGCAGCACCAC---CACCGCCACCA--CCACCGTTACC-TCCAAGAC-CACCCTCA---CCACAATC-TCAACCACCACC----ACCA-AC--A-ACAATAACAACAACAT--CAACACCAC--TAC-CA--ACCATCATCAG--CAGCAGCAGTACCAGCA
gi|15 : TCATCA-TTACAA--CC-------CATAGC-TTCATC---ATCAACAGCAGCATCA--ATAGCATTCTCATCAT--CATCAACATAAGTGGC---AGTGACATTATTTCA--CAC--CATCAG-------CAGC-----ATCAATTC----------CATTGT---A-TA--------A--A-T-CACCACCACCAT----------C------ATCA--------GTCATCATCATTGTCATCAgc
gi|16 : tTCAT---------CAT-CATTAT---------C---AGC-----AGCAGCATCTTTATCATTACTTTTTATCAT---TA---T----CATTATTA
gi|16 : ATCATCAT---TATCAGCAGC---A-GCATCTTTATCtttttgttatcattatcattaccatgatgatggtgatggtgatggtgatgatcatgatgatacagtacgattattataa
gi|16 : tcGT-AC-T-GTAT-CATCATGATCATCACCATCACCATCACCATCATCATGGTAATGATAATG---ATAAattactttttatcattatcattattatttttgttatcattatcattaccatgatgatggtgatggtgatggtgatgatcatgatgatacagtacgattattataa
gi|16 : tcatcatcattatcagcagcagcatctttatcattactttttatcattatcattattatttttgTATCATCATGATCATCACCATCACCATCACCATCATCATGGTAATGATgattattataa
gi|16 : tcatcatcattatcagcagcagcatctttatcattactttttatcattatcattattatttttgttatcattT-TATA--ATAAT---------CGTACTGTAT---------C---ATC-----ATGATCATCACCATCACCA----TCACCAT---CA---T----CATcagtacgattattataa
gi|18 : tcatcatcattatcagcagcagcatctttatcattactttttatcattatcattattatttttgttatcattatcattaccGTTATCATCAGT-----ATAA-TC--A-A------TATTA------TA--------A-TT-T-C--TATCATCAT----------A------ACCA------TGATCATCATTATTGTCATCATCAGCA--------TCCTCAT-CATTAATAGTATTAT
gi|19 : ggctgctaaatttaatatcgttATCGCTATCACTAGCTTTTTCGTCAACGGT--AGCATCAT-TTACATCA--TTATTGTTA---TCGTCGTTGTCGGCGTCATCATCATCATCAAAATCATCAT---CATCAGCAGC---Atatt
gi|2 : catcaccCATGTTTG-CTTCTG--GAACTTGGTT-----GGTTAACTTCTGGAACATGGTTGAATTCTGGA---ACAT--GGTTGACTTCTGAAACATAG--TT-GACTTCTGGATAGACTTATT-GGACATA--------GCAGACTTCAAGGTAGATGCCTAAG--TTGATTTATA------GGTCGATTTCAGGGAAATAGTTGACTTTCAAATTGACTTCTGGAATATATT--TGACTTTGAATTCTTTGATGCCATATATAATATA----TAA-TGTTTGAACACACTGTTAAGACCATTTAAAA-----------------------ATACCAGTATTCTGTTTAGAGTTGTTGTTTTGCTACTATGTTAATGTCAGTAAAATAATGTCAATTGGTATGTTTACAATCTCATATAGAAAGGCTAAAACAATTCAATTAGAAAGATAAATA-TATCAGGAAGTATAGTCG--GACATTGTGTAACAGAAAACACAACATTTTGATT-ACACTC--ATCAAAATCAAAATGAGA-----TTACCTATTATCGAAATCTCGATTATCCCATCTTCACCAA------------CATGTAGATAATAT-TAGTCCAGTCCTGCAA-CCAATTCTTCATCATCA---TCCATTACACATCTTCATCACCTGATATATCTCCATCTTCAGTGTCATCGGT-----GTCATCCATAA---CACT---T------------------ACTACCATC-ACAT-T--T--CCAT------CAT---CATCATTATGATCA-ACACTTTTATCATCAT-A--ATC--A--ATCA-CC--T-ATCATCAGT--ATCATCTGCAGTTTCATTG-AC-ACCATCC-TTA----ACATT-ACCCGATACCTTCTT-ATCAT-TACA--ATCAT---------TAT-CCTTAG---------C---GCC-----AACATCATCATCACTGTAA----TCATCAT---CA---T----CATCAGCAGCAGCA--AACATCTTCTTGTGTCCA---GTAAT----ACCT-CCATC--TCCAGTTCCATTGACACCATCCT-AGCATTA-CC----TAA-TACCTTTTTATCCTTACCATCATCATTTTATCACCAACATTATCATCATTAGCAT-A--TA-TAT-CTTTATCCATCCAGTATTATCTCCATCTCGAGTTCCATTGATGCTATT-CTTACAGT-ACTT-G-ATACAACGTTATCCTTACCATCATCATTCTGATCACCAACATCATCTTCAAT---GTAATCATC-TCATCCGTCCAGTGTTATTTCCATTTCAAGTTTCATTGGTGCCATTCTAACATTACCTTTT-CCCACTTTATCCCTACCATCATTTTTATCACCAACATGATCTTCAATGTAATCATCCTCATCAGCAGCATACATC-TCATCTGTCCAGTATTATTTCCATTTCCAGTTTCATTGGTGCCATTCTAACATTGCCTTTTACCACTATATCCTTACCATTATCATTCTTATCACCAACATCATCACTATAATCATCATCACCATCAGCAGCAGTATACATCTTCATCCATCCATGATTATCTCCCAACTCAAGTATCGTTGACGCCATTCTTACATTACCCAATACCACCTTATTCTTA-GC--AT---TATCA---TCATCACCAACATAG--A-CA-CTGCA-------------AT--C-ATCATC---ATCAGCA-----------------------GCATG-TATCTTCAT--GCATC--TTGT---ATTATGTC---CAT--CTCCAGTT-TTATTGACCGTATACCA-CTTTATA------C-TTACCATC-TGTATCCAT-A-TA-C-CAAAATCCTCAT----------CACTGTGATCA------TCATCATCATCATCATCAACAGCAGCAGCAGTATATCTTCATCCATCC--AGTTTTATCACCATGTCCAGTCCCATTGACACCATCATAGCATTACCGTAT-------ATCACTT-TATACTTACCATCTGTATCCATA-TACCAACATCat
gi|20 : acactccttacctgaatctatacgttggcaatcagtggatcccgtatgtaaaactttcgaaggactgtgcttctgtttctgaggaccgtCCA-G------CATCAC---CATC--------A-TAAT-AATCATCATCAT----------C------ATAA------TCGTTGTCGTCGTCGTAATGAACAGCCGCA-TATT--TTCAT---TTA--TATATTAACT
gi|21 : TTCTGGCACATGGTAGACTTCAG--AA--TTGGCAT------TTTATTTCTGTCACATGGTAGACTTCAGTATCGGCAT----TTCATTTCTGGCACAT-G--GTAGACTTCgatatatgattcagttacat
gi|22 : tgtttaatGTT-CAATTTGC-----ATTA-TGTTT-A------C--TAT---T-TG--------AATA-T------TCAT--T----------C------GT-A------TCATCATCATCATCATCATCAT---CGACA-T-TGTCTTCAT--A--------ATCATCTCCAT
gi|22 : atgtTCATTCGTATCATCATCATCATCATCATCATCGACATTGTCTTC---ATAATCATC-TCgag
gi|23 : atgtgttcaatttgcattatgtttactatttgaatatATTACCAT---CATCAGCAGC---A-GCATATTTATCATTGCATT-TTATCcatgag
gi|24 : tCATCAGCATTAGCATTA-TCACAA--TCAT-----CAT--C-ATCATCGATATCAACAGCAGCAGC---ATAGCattattataactgttgttattactatcattataatcattgttatcgttat
gi|24 : TTAT-CACA--ATCAT---------CAT-CATCAT---------CGATATC-----AACAGCAGCAGCATAGCCA----CCACCA----CA---TTCTACAACATCAACAGCA--GAcaccaccacattctacaacatcaacagcaga
gi|25 : catcagcattagcaAGAA--GTAGTAGTAGTAGCATG-TGTTGTCATTAACTTCATTATG---GTCATTTT---CATTATTCCATTT-TTATCGCC-----ATTA-TTGT---------CATTAC---C-
gi|26 : TTCTTAACCTAATCAATACAA---TCATCAACACCATCACAATCA-CTATAA--CCAA-----CAT--C-AGCATT---ATCATCAGCAGCAGCA--ACAGCAGAAGatc
gi|27 : tTTAT---------TAT-CATTAT---------C---AGC-----ATCATCATCATCATAATAA----TCACCAT---CA---T----CATAATCA
gi|28 : cattttttgcttATAC-ATCATAATCATTATGATCTTGATC---GT----G-----------ATAATCACAATCATCATCAGCAGCAACAGCAGCAcc
gi|29 : TTATCATTATCATCATGCTCAGCATCATCACTATCATG---AAAATCATT-Tta
gi|3 : ttaTTCTGAGGA--TCGTCTTTCTAGGTTGATCTCTGGGACATGGTTGATCTCTGG---GACAT--GGTTGATTTCTGGGACAT-G--------------GTTGACTTCTG-GGATACA--------GCCGACTTCT-----------TT-G--TTGACATCTG------AGTCAACTTCTGGGACATGGTTGACTTCTGAATTAACTACTGGAATATATC--TGA---------------TGCCGTATAAAATATACAGTTAAGTTTTTAAA---ACTGTTAAGACCAATTAAAACTACATA--------TCAGGAAAATACCAGAATACTGTTTA-AGTT-TTGTTTTGCTACTATGTTAGTGTCGGTACAATAACGCCAATAAGTATGTTTGTAATCTTATGTAGAGA--CTAGAGCAATTTAATTACAAAGATAA--A-TATTATGAAGAATGG--A--GATATTattaatattaatatc
gi|31 : catactccttacctggatctatacctggaactataggtatgtggccaatcagtggatcccaaatgtaaagctttcaaatgaatggacttctgt--ATCGT---------CGT-CGTGGT---------C---GTCCGGTTGTCGTTGTCGTCGTCGTCA----TTATCAT---CA---T----CATCATCAGC
gi|32 : AG--CAGCAGCAGCAGCATCATTAT--
gi|32 : CAGCAGCAGCAGCATCA--T--TATCCTCGAT--GT----TATTATCcctcgatgttattatcataaaattataattatcact
gi|33 : agTCGTCGTCGTCGTCGTTGTTGTCATCATCATCAGCAACA--GCAGCAGCAGCAataaaattataattatcact
gi|4 : gCAACAGAAGCAGTAGATATCTTCATCCGTCCAGTATT--ATATCCTTCTCGGGTCCCATTGACACCATCCTAG-CATGACTTTATATCACTTTATACTTACCATCTGTATCCATAT-ACCAACATCCTCATCACAGT------GNNNNNNNNNNNNNNNNNNNNNNNNNACAACAACAACAGCAGCAGAAGATATCTT-AATCAGTCCAGTATTATCTCCATCTGCAGTCCCATTTACACCATCTGAACATAACCGTATATCACTTTATACTTACCATCTGTATCCAT--ATACTAGCATTCTTATGACTGTGATCATCATCATCATCAACAATAACAGAAGTATATACCTTCATCCGTCCAGTATTAg
gi|5 : a-CACCA-TTACCATC-ATTT-TAATGACCATACTGATCATTCTCATCTTTACTGTCAGATGCTCT-A-CATAATCATCAGC--A--G-CA-GCAGT-AACAGCAGC--ATTATNNNNNNNNNNNNNN-NN-NNNNN-N-NNN----NNN-N-NNNNNNNNNNNNNNN-NNNNN-NNNN--NNNNN---------N-T-TGTCAGGAGCAGCAGC---AGC-----AGCATGATCAACATCTTGA----TCAACAT---CA---T----TATCATCATTATCATTATCAC--TGTTATGACCA----TAATGATCATTT-TCATC--TTTACATC--TTGTC-----CCT-GG--TTG-AAATCTCAA-TATC--ATCATCATTATCATCATCAT-----------CATCAGCAGCAGCAGTGT-AACCACCAT-CTTAATCtatccatctcgagtcccattgacacca
gi|5 : cattatcattatTCAG--GAGCAGCAGCAGCAGCATGATCAACATCTTGATCAACAT-CATTAT------CATC---ATTATCATTATCACTG-TTATGACCATAA--TGAT--CATTTTCATC-TTTACATCTTGTCCCTGGTTGAAAT-CTCAATATCATCATCATTATCATCATCATCATCAGCAGCAGCAGTGTAACCACCATCTTAATCATTATCattatcatca
gi|6 : cattatcattatcaccattaccatcattttaatgaccatactgatcattctcatctttactgtcagatgctctacataatcatcagcagcagcagtaacagcagcattatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnttgATCTCAACCATCAGCAACAGCTGCTTTCTATTATCAACATCATCACTACTTTATCTTTCTA-GTCATCAGC-ATGATCTATTT-T--TA-TCAA------CAT---CATCATTAC-------CACTAT-ATCATCATCATCATC--ATTATCGTCC--TCATAAGCAGCTGATTATGTGTATTTGTATTA-GCTGCTA----TTA----A---------------TTTTG-TTCATAAACATCATCAT---------CTT-CATTAT---------G---ACT-----AT-ATCATCATCATTGTCA----TCATCAT---CATCCT----CCTCATTAGCAGCT--GA-------TTATGTGTATTTGTATT----AGCTGCTATTAATTTTG-TTCATAAACATCATCATCATCATTATGA----CTA-TATC--ATCATCATTGTCATCATCAT-----------CCTCatca
gi|7 : TTCTCAAAGTTAT-T-G-GTAT--TGTTATG-TCATCATAATTATCATG---ATTGACATCGTAAT-GTC---GTAATCATTATCATCctcatt
gi|7 : aTATTGTTAT-GTCATCAT---A--ATTA-TC----ATGATTGAC--ATC----GTAATGTCGT---A--ATCAT----TA----TCA-TCGCTGGTTACATT-------AT-CATA--TTCAT---------CAT-CACTG---------------CT-----AACACCATCGTCATCGTAA----T-ATCATAGGCA---T----CATCAgctggttacattatcatattcatcatcactgctaacaccatcgtcatcgtaatatcataggcatcatcaaaattacagtgtacatcaacttagacaacagtgtcagatttattattaattgcattatcataagtaatgacatcgttatcatcgacatcatcaccaatatattcattatcgtcataataattagcatcgtcaataacatcg
gi|7 : attctcaaagttattggATTATCATC-GCTGGT--T--ACAT------TAT---CATATTCA---TCA-TCACTGCTAACACCATCGTCATCGTA--AT---------ATCATAGGC--ATCATC-AAAATTACAGTGTAC-ATCAA-C-TTAGACAACAGT-GTCAGAT---TTATTATTAAT-TGCATTATCATAAGTAATGACAT-CGTTAT---------C---ATC-----GACATCATCACCAATATAT----TCATTAT---CG---T----CATAATAATTAGCA--aaattacagtgtacatcaacttagacaacagtgtcagatttattattaattgcattatcataagtaatgacatcgttatcatcgacatcatcaccaatatattcattatcgtcataataattagcatcgtcaataacatcg
gi|8 : attctcaaagttattggtattgttatgtcatcataattatcatgattgacatcgtaatgtcgtaatcACAATTTAATTATGAAGATAGATACTGT--GAAAGAAACGTAAATGGCATTAT-TAA-AGAAAGCA-----TTTT-ATTGACACTCTTGACGAGA--AAAA----ATTAACTTACCTATTATCCAAGTCTTGGCTACCCCAACTTTATCAA------------TATTTGAATGACTTCTAACCCAG------GATCCGATTCTTTACTATCACACTCCATCATACATCTTTATCTACTGGCTTATTTCTATCTTCAGTTTCATCGAT-----GTCATCCATAACATTACT---TGtcgtcaataacatcg
gi|9 : TTTCA-TC--ATCAACACCACCATTATCATCAACAATATCATCA-CCAACA--TCATTAA--CAA--C-ACCATT---GTCAACAGCAACAACA--ANNNNNNNNNNNNNNNN-NNNNNNNNN--NNNNN--NNNN---NNNNNNNN---NNN--NNNNNNNN-NNNNNNNN-----NNNN-NNNNN-N------NNNNNN---N-NGCAACAACAA-TT-T-CAGCATCATTAT----------C------ATCAACACCACCACCATCATCATCATAAT
gi|9 : gcttctgTCAGCATCATTATCATCAACACCACCACCATCATC---ATCATAAT-----TTTGTCAAGTCTTACTtttgtcaagtcttactaaatac
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|17 ): CACTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCCACCGTTATCATCATACCCCATCATCAGTGCTAT
Unaligned ( gi|30 ): TTGTCATTATTATCATTATTGTTATCAGTAATATCCTCTTTTTTTCCATCTCGCCCTCCTCCTCCT
Alignments
lowQualScore : 111111 22222 3333 11 2222222 22222222 11111111111111111 222222 11 2 22222222 6666666666666 1 1 11111 1 11 11 666666666666 5555555555 222 666666666666666666666666 1111111 222222 111 11 222222222 222222222222 22222222222222222 11111 111111111 1111111111111111111111 11111 222 2222 333333 44444444444 11111 2 22222 1 222 1 1111 222222 1111111 1 111 111111 1 11111 11 11 11 111111 111 22222 111111 333333333333333333 111 2222222222222222222222 44444444444444444444444 11111 111111 111111 11111 333333333 4444444 1111 11 111 222 1 2222 1 1 11 55555555555 11 222222 11 11 11 1 222222 222 11111 1 11 111 1 88888888888888888888 22222 11 111 222 1 88888888888888888888888888888888 1 1 222 1 11 77777777777777777777777
lowQualScore : 1 3 222222 1 33333 1 1 1 5555 11 1 8 5555555 4 1 8 0 99999999 1 77777777777777777 0 333333 1 0 0 11 6 6 0 00000000 7 6 6 9999999999999 2 6 0 0 0 6 1 3 0 6 0 44444 6 6 6 6 3 88 0 7 11 999999 888888888888 1 6 7777777777 0 333 1 6 6 555555555555555555555555 9999999 333333 444 1 11 333333333 1 3 2 555555555555 1 4 2 8 2 77777777777777777 1 2 2 33333 2 66 666666666 4 3 8888888888888888888888 1 1 8888 777 8888 1 44444 444 6 8888 1 6 7 6 777777 7 0 1 77777777777 8 99999 8 8 8 77777 2 1 0 11111 7 1 1 1 888 3 1 5 111 1 1 1 5 22 1 0 1 0 0 6 0000 1 888888 2 7777777 4 1 2 1 0 22 444 666666 77 2 4 44444 77 1 44 0 44 33 1 3 1 7 333333 5 1 111 9 1 0 5 66 66 11111 66 5 1 2 4 0 66 000000 2 5 333333333333333333 5 555 77 3 4 1 0000000000000000000000 66666666666666666666666 44 00000 111111 111111 0 4 3 0 6 66666 111111111 1 1 0 0 6 3333333 8888 44 1 6 1 66 1 1 0 44 11 2 1 999 000 0 0 1 0000 2 1 7777 0 0 0 99 22222222222 1 1 33 1 2 333333 3 11 33 88 5 1 999999 111 1 1 1 77777 1 5 1 77 222 3 1 66666666666666666666 1 66666 1 88 1 1 999 1 1 2 22 111 1 1 22 1 5 1 1 66666666666666666666666666666666 1 5 5 1 22 1 1 1 2 22 1 1 1 111 5 88 77777777777777777777777 1 1 1 1
lowQualScore : . . ...... . ..... . . . .... .. . . ....... . . . . ........ . ................. . ...... . . . .. . . . ........ . . . ............. . . . . . . . . . . . ..... . . . . . .. . . .. ...... ............ . . .......... . ... . . . ........................ ....... ...... ... . .. ......... . . . ............ . . . . . ................. . . . ..... . .. ......... . . ...................... . . .... ... .... . ..... ... . .... . . . . ...... . . . ........... . ..... . . . ..... . . . ..... . . . . ... . . . ... . . . . .. . . . . . . .... . ...... . ....... . . . . . .. ... ...... .. . . ..... .. . .. . .. .. . . . . ...... . . ... . . . . .. .. ..... .. . . . . . .. ...... . . .................. . ... .. . . . ...................... ....................... .. ..... ...... ...... . . . . . ..... ......... . . . . . ....... .... .. . . . .. . . . .. .. . . ... ... . . . .... . . .... . . . .. ........... . . .. . . ...... . .. .. .. . . ...... ... . . . ..... . . . .. ... . . .................... . ..... . .. . . ... . . . .. ... . . .. . . . . ................................ . . . . .. . . . . .. . . . ... . .. ....................... . . . .
lowQualScore : 0 2 444444 4 22222 0 4 4 8888 00 0 0 2222222 2 0 0 8 00000000 0 88888888888888888 8 000000 4 8 8 00 4 7 7 33333333 3 7 7 7777777777777 0 7 7 7 7 7 0 2 0 5 8 22222 7 7 7 7 3 33 7 3 00 333333 333333333333 0 7 0000000000 7 333 0 0 0 666666666666666666666666 5555555 000000 000 0 44 222222222 0 5 5 000000000000 7 8 8 0 2 44444444444444444 0 8 2 88888 8 99 000000000 0 9 1111111111111111111111 0 0 5555 000 5555 4 22222 222 7 3333 0 7 3 7 000000 3 7 0 55555555555 0 00000 0 0 0 77777 5 0 5 00000 3 0 0 0 888 4 0 5 000 0 0 0 5 00 0 7 0 7 7 7 8888 0 000000 5 2222222 2 2 0 2 0 22 000 222222 33 0 0 33333 77 0 33 7 33 00 0 7 0 3 000000 0 4 777 3 6 2 0 99 99 22222 99 0 1 4 5 1 11 666666 3 7 777777777777777777 7 777 99 1 4 0 1111111111111111111111 77777777777777777777777 77 00000 555555 555555 5 0 0 7 6 77777 222222222 0 0 7 7 7 3333333 7777 77 0 7 4 00 4 4 8 66 00 2 0 555 555 2 0 0 5555 5 0 2222 0 0 2 88 55555555555 2 0 88 0 0 888888 2 00 88 33 0 0 000000 000 0 0 0 00000 0 0 0 55 333 3 0 00000000000000000000 0 00000 0 55 0 0 555 0 0 5 00 000 0 0 00 0 0 0 0 00000000000000000000000000000000 0 0 0 0 00 0 0 0 5 00 0 0 0 000 0 00 00000000000000000000000 0 0 0 0
consensus : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTCTGGNACATGGTTGACTTCTG--GA--TCGGCTT-CTAGGTTNACTTCTGGGACATGGTTGACTTCTGGA--GACAT--GGTTGATTTCTGGNACAT-G--TT-NACTTCCGGGTNGACTTCTG-GGACATA--------GCNGACTTCTAGGTAGATGCNTTAG--TTGATTTCTG------GGTCGACTTCTGGGAAATGGTTGACTTCCGAATTGACTTCTGGAATATATT--TGACTTT-AATTCTTTGATGCCGTATATAATATACAGTTAAGTTTTTAAACACACTGTTAAGACCATTTAAAACTACATA--------TCAG-AAAATACCAGTATTCTGTTTAGAGTTGTTGTTTCGCTACTATGTTAATGTCGGTACAATAACGTCGATTGGTATGTTTACAATCTCATATAGAGAGGCTAAAACAATTTAATTANAAAGATAAATA-TATCAGGAAGAATAGTCA--GACATTGTGTAACAGAAAACACAACATTTTGATT-ACACTC--GACGAAATCAAAATGAGATTAACTTACCTATTATCCAAATCTCGATTATCCCATCTTCAC------------CAACATGTAGATAATNTCTAGTCCAG-N------A-CCGATTCTTCATCATCA---TCCATTACACATCTTCATCACCTGATTTATCTCNATCTTCAGTGTCATCGGTGTCATCCATAACATTACCTGATACTTCCACACACCAACTACCATCACTT-T--T--CCAT------CAT---CATCTTTACGATC--A-A----CACTNTTATCATCATCATCATC--AATCACC--TATCATCGGCATCATCTGCAGTTTCATTG-ACACCAT-C-TTA----AC-A-T-GCCNGATACCTTCTT-TTCATTACA--ATCAT---------CAT-CGTTAT---------C---ACC-----ANCATCATCATCATCGTNA----TCATCAT---CAT----CATCATCAGCAGCA--A--ACAT--TCTTGTGTCCAGTAAT----ACCTCCATCTCCAGNTCCATTGACACCATCCTAGCATTAAA----C-AATACCTTATTATCCTTACCATCATCAT-----------CATCAGCAGCAGCAGCAT-A--TA-TAT-C-TTG-ATCCGTCCAGTATTATCCCCATCTCNAGTTCCATTGACGCCATTCTTACAGTAC-T-G-ATACAACGTTATCCTTATCATCATCATCATCATCATCATCATCA---TCATCATCGTAATCATCTCATCCGTCCAGTGTTATTTCCATTTCAAGTTTCATTGGTGCCATTCTAACATTACCTTTTCCCACTTTATCCCTACCATCATTTTTATCGCCAACATGATCTTCANTGCAATCATCNTCACCANCAGCATACATCTTCATCCGTCCANNGTTATCTCCATCTCNAGTTTTATCGNCGCCGTTCTAACATC-GCCTTNTACCACC----TTATCGTTAC--TC-ATCGTTCTTGTCACCAACATCATC-ACTATAATCATCAT---CATCAGCAGC---A-TGCATCTTCATCCATCCATNATTATC-TCC-CATCTCAAGTA-CCGTTGACGN-CATCCTTACATTACCCGATACCANCTTATTCTTA-CC--ATCAACACCATCAT---CANCAACATCATCATCA-CTACA--A--TCAT-----CAT--C-ATCATCATCAACAGCAGCAGCA--ATAGCAGNAGCANCATG-TATCTTCAT--GCGTC--TAGT---ATTATCT-C---CAT--CTCCAGTT-TTATCGGC-----ATCA-T-TCTA-ACATTAC---C-TG--------A-T-A-TCATCAT-----CATCATC------ATCA------TCGTC-ATCATCATCGTCATCATCAGCAGCA-TAT-TCTTCATCCATTA--AGTATTATCTCCATNTCCAGTCCNATCGACACCGTCATAACATTACCTTAT-------ATCACTT-NA-ACTTACCATCGNCATCNTTACCACCAACGTCATCGCCACCGTCGTCGTCGTCGTCATCGCCAGCGNCA--GCAGCAGCANCAT--ACATCTTCACCGATCCACCATTATC-TCCNTNTC-CAGCNTCATTGCCACCATC-TTAAC-ATTACCT-ATACCA-GCTTATACT-TATCAACANCAT--CANCACCGC--TACTCATCACCATCATCAG--CAGCAGCAGCAGCAGCATTAT--ATATCTTCATC--CATCCANTATAACCTCCATCTCTANTNCCATTGNCACCGATTNTGACCATNACCTGATACCATCTTAATC-TTANCATCTTGTCC---GT----AT-C-CAA---CATCATCATNATCATCATCAGCAGCAGCAGCAGCAGCGTAACCACCATCTTNACCATTATCCAGTATTTTCTCCATCTCCAGTCCAATTGACCCAATTCTAAATTTACCTGATACCACCCAATACTTACAACCATCATCCTTATCACCAACATCATCATTAATGTTATTACCATCAACAGCAGCAGCATATATCTTCACCCGTCCAGTATTTTNTNTCCNTCTCCGGTCCNNTTGACACCATCCTAGACATNACCTNATATCACCTTATACTTACCATCNNCATCCNTATCACCNACATCCTCATCACNGTT-----GNNNNNNNNNNNNNNNNNNNNNNNNNACAACAACAACAGCAGCAGAANATATCTTCAACCAGTCCAGTATNATCTCNNTCTNCAGTCCCANTNACGCCATCCGAACATAACCNNACACNANCTTATACTTACCANCTGTATCCATCAACACTGGCATTCTTATGACTGTGATCATCATCATCATCAGCAGTAGCAGNAGCATATACNTTCATNCGTCNAGTATTA
Reference ( family-1427 ) : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTCTGGNACATGGTTGACTTCTG--GA--TCGGCTT-CTAGGTTNACTTCTGGGACATGGTTGACTTCTGGA--GACAT--GGTTGATTTCTGGNACAT-G--TT-NACTTCCGGGTNGACTTCTG-GGACATA--------GCNGACTTCTAGGTAGATGCNTTAG--TTGATTTCTG------GGTCGACTTCTGGGAAATGGTTGACTTCCGAATTGACTTCTGGAATATATT--TGACTTT-AATTCTTTGATGCCGTATATAATATACAGTTAAGTTTTTAAACACACTGTTAAGACCATTTAAAACTACATA--------TCAG-AAAATACCAGTATTCTGTTTAGAGTTGTTGTTTCGCTACTATGTTAATGTCGGTACAATAACGTCGATTGGTATGTTTACAATCTCATATAGAGAGGCTAAAACAATTTAATTANAAAGATAAATA-TATCAGGAAGAATAGTCA--GACATTGTGTAACAGAAAACACAACATTTTGATT-ACACTC--GACGAAATCAAAATGAGATTAACTTACCTATTATCCAAATCTCGATTATCCCATCTTCAC------------CAACATGTAGATAATNTCTAGTCCAG-N------A-CCGATTCTTCATCATCA---TCCATTACACATCTTCATCACCTGATTTATCTCNATCTTCAGCGTCATCGGCGTCATCCATAACATCACTTGAT-CTTCCA-GCACCAACTACCATCACTT-T--T--CCAT------CAT---CATCNTTACGATC--A-A----CACTNTTATCATCATCATCATC--AATCACC--TATCATCGGCATCATCTGCAGTTTCATTG-ACACCAT-C-TTA----AC-A-T-GCCNGATACCTTCTT-TTCATTACA--ATCAT---------CAT-CGTTAT---------C---ACC-----ANCATCATCATCATCGTNA----TCATCAT---CAT----CATCATCAGCAGCA--A--ACAC--TCTTGTGTCCAGTAAT----ACCTCCATCTCCAGNTCCATTGACACCATCCTAGCATTAAA----C-AATACCTTATCATCNTTACCATCATCAT-----------CATCAGCAGCAGCAGCAT-A--TA-TAT-C-TTG-ATCCGTCCAGTATTATCCCCATCTCNAGTTCCATTGACGCCNTTCTTACAGTAC-T-G-ATACAACGTTATCCTTATCATCATCATCATNATCATCANCATCA---TCATCATCGTAATCATCTCATCCGTCCAGTGTTATTTCCATTTCAAGTTTCATTGGTGCCATTCTAACATTACCTTTTCCCACTTTATCCCTACCATCATTTTTATCGCCAACATGATCTTCANTGCAATCATCNTCACCANCAGCATACATCTTCATCCGTCCANNGTTATCTCCATCTCNAGTTTTATCGNCGCCGTTCTAACATC-GCCTTNTACCACC----TTATTCTTAC--TC-GTCGTTCTTATCGCCAACATCATC-ACTANAATCATCAT---CATCAGCAGC---A-TGCATCTTCATCCGTCCATTATTATC-TCC-CANCTCNAGTN-CCGTTGACGN-CANCCTNACATTACCCGATACCANCTTATTCTTA-CC--ATCAACACCATCAT---CACCAACATCATCATCA-CTACA--A--TCAT-----CAT--C-ATCATCATCAACAGCAGCAGCA--ATAGCAGNAGCAGCATG-TATCTTCAT--GCGTC--TAGT---ATTATCT-C---CAT--CTCCAGTT-TTATCGGC-----ATCA-T-TCTA-ACATTAC---C-TG--------A-T-A-TCANCAT-----CATCATC------ATCA------TCGTC-ATCATCATCGTCATCATCAGCAGCA-TATNTCTTCATCCATTA--AGTATTATCTCCATNTCCAGTCCNATCGACACCGTCATAACATTACCTTAT-------ATCACTT-NA-ACTTACCATCGNCATCNTTACCACCAACGTCATCGCCACCGTCGTCGTCGTCGTCATCGCCAGCGNCA--GCAGCAGCANCAT--ACATCTTCACCGATCCACCATTATC-TCCNTNTC-CAGCNTCATTGCCACCATC-TTAAC-ATTACCT-ATACCA-GCTTATACT-TATCAACANCAT--CANCACCGC--TACTCATCACCATCATCAG--CAGCAGCAGCAGCAGCATTAT--ATATCTTCATC--CATCCANTATAACCTCCATCTCTANTNCCATTGNCACCGATTNTGACCATNACCTGATACCATCTTAATC-TTANCATCTTGTCC---GT----AT-C-CAA---CATCATCATNATCATCATCAGCAGCAGCAGCAGCAGCGTAACCACCATCTTNACCATTATCCAGTATTTTCTCCATCTCCAGTCCAATTGACCCAATTCTAAATTTACCTGATACCACCCAATACTTACAACCATCATCCTTATCACCAACATCATCATTAATGTTATTATCATCAACAGNAGCAGCANATATCTTCACCCGTCCAGTATTTTNTNTCCNTCTCCGGTCCNNTTGACACCATCCTAGACATNACCTNATATCACCTTATACTTACCATCNNCATCCNTATCACCNACATCCTCATCACNGTT-----GNNNNNNNNNNNNNNNNNNNNNNNNNACAACAACAACAGCAGCAGAANATATCTTCAACCAGTCCAGTATNATCTCNNTCTNCAGTCCCANTNACGCCATCCGAACATAACCNNACACNANCTTATACTTACCANCTGTATCCATCAACACTGGCATTCTTATGACTGTGATCATCATCATCATCAGCAGTAGCAGNAGCATATACNTTCATNCGTCNAGTATTA
gi|1 : TTCTGAGGAC------------CGCATCTCCACGTACATGCGTAAAAATTG--TTCTGAGATATGGTTGACCTTT----AA--GTCGACTTCTGTGTTTACTTCTGGAACATGGT--TGATTT
gi|1 : tgtTTCTGAGATATGGTTGACCTTTA--AG--TCGACTT-CTGTGTTTACTTCTGGAACATGGTTGATTTCTGAA---ACAT--GGTTGACTTCTGGAACAT-G--TT-TTTTTCTGGATAGACTTCTG-G-ACATA--------GCAGACTTCTAGATAGATGCCTTAG--TTGATTTCTT------GGTCGATTTCAGGGAAGTGGTTGACTTTCAAATTGACTTCTGGAATATATT--TGACTTTCAATTCTTTGATACCATATATAATATACAAT---GTTT--AAACACACTGTTAAGACCATTTAAAACTACATAATATTTTATCAGTAAAATACCTGTATTCTTTTTAAAGTTGTTGTTTCACTACTATGTTAATGTCGGTACAATTATGTTGACTGGTATGCTTACAATCTCATATAGAGAGGCTAAAACAATTTAATTAGAAAGATAAATA-TATCAGGAAGAATAGTCA--GACATTGTGTAACAGAAAACACAACATTTTGATT-ACATTC--GACAAAATCCTATTAAGATTAACTTA----TTATCCAAATCTCGATTATCCCATCTTCACCAACAGCTTCACCAACATGTAGATAATGTCCAGTCCAGCA------A-CCAATTCTTCATCACCA---TCCATTACACATCTTCATCACCTGATTTATCTCAATCTTCAGTGTCATCGGTGTCATCCATAACATTACCTGATACTTCCACACACTAACTACCATCACTT-T--T--CCAT------CAT---CATCCTTATGATC--A-A----CACTTTTATCATCATCATCATC--AATCACC--TATCATCAGTATCATCTGCAGTTTCATTG-ACACCATCC-TTA----ACAA-T-GCCCGATACCTTCTT-TTCATTGCA--ATCAT---------CAT-CCTTAT---------C---ACC-----AACATCATCATCACTGTAA----TCATCAT---CAT----CATCATCAGCAGCA--A--ACA---TCTTGTGTCCAGTAAT----ACCTCCATCTCCAGCTCCATTGACACCATCCTAGCATTAAA----CAAATACCTTATTATCCTTACAATCATCAT-----------CATCAGTAGCAGCAGTAT-A--TA-TAT-C-TTG-ATCCGTCCAGTATTATCCCCATCTCCAGTTCCATTGACACC-TTCTTACAGTACTT-G-ATACAACGTTATCCTTACCATCATCATTATGATCACCAACATCA---TCATCACTGTAATCATCTCATCCGTCCAGTGTTATTTCCATTTCAAGTTTCATTGGTGCCATTCTAACATTACC-TTTCCCACTTTATCCCTACCATCATTTTTATCGCCAACATGA---TCACTGCAATCATCATCACCATCAGTATACATCTTCATCCGTCCATGGTTATCTCCAACTCAAGTATTATTGACACCATTCTAACATT-TCCCGGTACCACC----TTATTCTTAC--TC-ATCATTCTTATCACCAACATCTTC-ACTGCAATCATCAT---CATCAGCAGC---A-TGTATCTTCATGCGTCTAGTATTATC-T-C-CATCTCCAATT-CTATTGACAA-CAACCTAACATTACCAGATACCAGCTTATTCTTA-CC--ATCAACAACTTTAT---CGCCAACATCATCATCA-CTGCA--A--TCAT-----CAT--C-ATCATTATTAGCAGCAGCAGCA--GTAGCAGAAGCAGCATG-TATCTTTAT--GTGTC--TAGT---ATTATCT-C---CAT--CTCCAGTT-TTATTGAC-----AGCA-T-CCTA-ACATTAC---C-TG--------A-T-A-CCACCTT-----CATCACC------ATCA------CTGTT-ATCACCATCATCATCATCAGCAGCA-TATCTCTTCACCTATTA--AGTACTATCTTCATCTCCAGTTCACTTGACACCAGCCTAACATTACCTGAT-------ACCACCTAAA-ACTTACCATCATCATCTTTACCACCAACACCATCACCACTGTTATCTTCATCATCATCACCAGCTTCA--GCAGCAGCAGCAT--ATATCTTCACCTATCCAGTATTATC-TCCTTCTC-CAGTCTCATTGACACCATC-CTAAC-ATTACCTGATACCA-GCTTATACT-TACCAACATCAT--CAACACTGTGATACTCATCACCATCATCAG--CAGCAGCAGCAGCAGCATTAT--ATATCTTCACC--TATCCAGTATAACCTCCATCTCTAGTCCCATTGAC-CCAATTCTAA-CATTACCTAATACCACCTTAAAC-TTACCATCTTGTCC---AT----ATAC-CAA---CATCATTATCATCATCATCAGGAGCAGCAGCAGCAGCATA-----TATCTTTACC--TATCCAGTATTTTCTCCATCTCCAGTCCAATTGACCCAATTCTAAATTTACCTGATACCACCCAATACTTACAACCATCATCCTTATCACCAACATCATCATTAATGTTATTATCATCAACAGCAGCAGCATATATCTTCACTTATCCAGTATTTTTTCTCCATCTCCAGTCCATTTGACACCATTCT-GACATTACCTGATATCACCTTATACTTACCATCATCATCCTTATCATCTACATCCTCATCACTGTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTATATCTTCAACTA-TCCAGTATAATCTCATTCTCCAGTCTCAATGATGCCATCCTAACATAACCTGACACAAGCTTATACTTACCAAC---AT-CATCAACACTG-----------------------ATCATCATCAGCAGTAGCAGCAGCATATATATTCATGTATCGAGTATTActgaaacatggttgacttctggaacatgtttttttctggatagacttctggacatagcagacttctagatagatgccttagttgatttcttggtcgatttcagggaagtggttgactttcaaattgacttctggaatatatttgactttcaattctttgataccatatataatatacaatgtttaaacacactgttaagaccatttaaaactacataatattttatcagtaaaatacctgtattctttttaaagttgttgtttcactactatgttaatgtcggtacaattatgttgactggtatgcttacaatctcatatagagaggctaaaacaatttaattagaaagataaatatatcaggaagaatagtcagacattgtgtaacagaaaacacaacattttgattacattcgacaaaatcctattaagattaacttattatccaaatctcgattatcccatcttcaccaacagcttcaccaacatgtagataatgtccagtccagcaaccaattcttcatcaccatccattacacatcttcatcacctgatttatctcaatcttcagtgtcatcggtgtcatccataacattacctgatacttccacacactaactaccatcacttttccatcatcatccttatgatcaacacttttatcatcatcatcatcaatcacctatcatcagtatcatctgcagtttcattgacaccatccttaacaatgcccgataccttcttttcattgcaatcatcatccttatcaccaacatcatcatcactgtaatcatcatcatcatcatcagcagcaaacatcttgtgtccagtaatacctccatctccagctccattgacaccatcctagcattaaacaaataccttattatccttacaatcatcatcatcagtagcagcagtatatatatcttgatccgtccagtattatccccatctccagttccattgacaccttcttacagtacttgatacaacgttatccttaccatcatcattatgatcaccaacatcatcatcactgtaatcatctcatccgtccagtgttatttccatttcaagtttcattggtgccattctaacattacctttcccactttatccctaccatcatttttatcgccaacatgatcactgcaatcatcatcaccatcagtatacatcttcatccgtccatggttatctccaactcaagtattattgacaccattctaacatttcccggtaccaccttattcttactcatcattcttatcaccaacatcttcactgcaatcatcatcatcagcagcatgtatcttcatgcgtctagtattatctccatctccaattctattgacaacaacctaacattaccagataccagcttattcttaccatcaacaactttatcgccaacatcatcatcactgcaatcatcatcatcattattagcagcagcagcagtagcagaagcagcatgtatctttatgtgtctagtattatctccatctccagttttattgacagcatcctaacattacctgataccaccttcatcaccatcactgttatcaccatcatcatcatcagcagcatatctcttcacctattaagtactatcttcatctccagttcacttgacaccagcctaacattacctgataccacctaaaacttaccatcatcatctttaccaccaacaccatcaccactgttatcttcatcatcatcaccagcttcagcagcagcagcatatatcttcacctatccagtattatctccttctccagtctcattgacaccatcctaacattacctgataccagcttatacttaccaacatcatcaacactgtgatactcatcaccatcatcagcagcagcagcagcagcattatatatcttcacctatccagtataacctccatctctagtcccattgacccaattctaacattacctaataccaccttaaacttaccatcttgtccatataccaacatcattatcatcatcatcaggagcagcagcagcagcatatatctttacctatccagtattttctccatctccagtccaattgacccaattctaaatttacctgataccacccaatacttacaaccatcatccttatcaccaacatcatcattaatgttattatcatcaacagcagcagcatatatcttcacttatccagtattttttctccatctccagtccatttgacaccattctgacattacctgatatcaccttatacttaccatcatcatccttatcatctacatcctcatcactgttnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntatatcttcaactatccagtataatctcattctccagtctcaatgatgccatcctaacataacctgacacaagcttatacttaccaacatcatcaacactgatcatcatcagcagtagcagcagcatatatattcatgtatcgagtatta
gi|10 : tgtttctgaggaccgcatctccacgtacatgcgtaaaaattgATCGACATCGT-ATAACAATACTTTATCGACATAGTCATTG-CA-AACTATTATCGACATCGTCACTGCCAATGCCATTGCCACCGTTTTCGACATCGTAATTGTCATCGTCATTGCTG--ACGTTATTGACATTTTCATTGA--CACCATTATC-TCCAT-------CGTTATTGCCACCGTTATTGAT-ATTGTCA-ATATCA---TTG---T-TATCGACAGCGT--CATTGCCAT--T-TTCAT
gi|11 : ttTCATCATCATCGTCGTTGTCGTCGTCGCCGCC-GNNNNN--NNNNNNNNNNNNN--NNNNNNNNNNNNNNNCATTATTGTCATATTTATCACAGCATCATAATCATCATT-TTAAT-ATTAACT-ATACCGTGATCATA----ATCAATATCATACCATTACCAC---AGTCATCATCATTATCGGTATAGCAGCAACATCAATATTAT--ATAGCAGCATC--t
gi|12 : aCATTGTTGATTTCTT--GA--TTAACTA-CTAGGCTGACATCTTAGATATGGTTGACTTCTGGGCTGGCATCTGATATATTGTTGGTTTAT-GGTTT-TACTCCCGGGTTGACTACTA-GGATATGACTTAGAGGCTGACTTCT-GGTA----CATTA---TTGATTTCTG------AAACAACTTCTGGGAAATGGTTGACTTCTGGGCTGATATCTGG--TACATTGCTGATTTagaagacac
gi|13 : AACATCATCATCATCTACA--AATTCATGTTACCTT--CTAACATCATCTACATCATCAGCATTATATT--CAACATCATGATATCTTCCA--ACATC--TA-T---ATCATCA-CTATCAT--CTTCAATT-TCAT-GAT-----ATC--T-TCTA-ATATCAA---CATT--------A-TCA-TCTTCAA-----CATCATG------ATAA------TCTTCCAACATCATCTAAATCATCACCATCA-----TCTTCA
gi|14 : ccttgCAACAACATCAACACCACTATCAAC-----CATCAGCAATAGCACCA--GCAGCAGCACCAC---CACCGCCACCA--CCACCGTTACC-TCCAAGAC-CACCCTCA---CCACAATC-TCAACCACCACC----ACCA-AC--A-ACAATAACAACAACAT--CAACACCAC--TAC-CA--ACCATCATCAG--CAGCAGCAGTACCAGCAaca
gi|15 : TCATCA-TTACA--A--CC-------CATAGC-TTCATCATCAACAGCAGCATCA--ATAGCATTCTCATCAT--CATCAACATAAGTGGC---AGTGACATTATTT-CA--CAC--CATCAG-------CAGC-----ATCAAT-TC----CATTGT---A-TA--------A---A-TCACCAC-----CACCATC------ATCA--------GTC-ATCATCATTGTCATCAgc
gi|16 : tTCAT---------CAT-CATTAT---------C---AGC-----AGCAGCATCTTTATCATTACTTTTTATCAT---TAT----CATTATTA
gi|16 : ATCATCAT---TATCAGCAGC---A--GCATCTTTATCtttttgttatcattatcattaccatgatgatggtgatggtgatggtgatgatcatgatgatacagtacgattattataa
gi|16 : tcGTAC-T-GTAT-CATCATGATCATCACCATCACCATCACCATCATCATGGTAA---TGATAATGATAAattactttttatcattatcattattatttttgttatcattatcattaccatgatgatggtgatggtgatggtgatgatcatgatgatacagtacgattattataa
gi|16 : tcatcatcattatcagcagcagcatctttatcattactttttatcattatcattattatttttgTATCATCATGATCATCACCATCACCATCACCATCATCATGGTAATGATgattattataa
gi|16 : tcatcatcattatcagcagcagcatctttatcattactttttatcattatcattattatttttgttatcattTTATA--ATAAT---------CGTACTGTAT---------C---ATC-----ATGATCATCACCATCACCA----TCACCAT---CAT----CATcagtacgattattataa
gi|18 : tcatcatcattatcagcagcagcatctttatcattactttttatcattatcattattatttttgttatcattatcattaccGTTATCATCAGT-----ATAA-T-C--A-ATATTA------TA--------A-T-T-TC--TAT-----CATCATA------ACCA------TGATC-ATCATTATTGTCATCATCAGCA--------TCCTCAT-CATTAATAGTATTAT
gi|19 : ggctgctaaatttaatatcgttATCGCTATCACTAGCTTTTTCGTCAACGGT--AGCATC-AT-TTACATCA------TTATTGTTA---TC-GTCGTTGTCGGCGTCATCATCATC-ATCAAAATCATCAT---CATCAGCAGC---A-tatt
gi|2 : catcaccCATGTTTG-CTTCTG--GAACTTGGTT-----GGTTAACTTCTGGAACATGGTTGAATTCTGGA---ACAT--GGTTGACTTCTGAAACATAG--TT-GACTTCTGGATAGACTTATT-GGACATA--------GCAGACTTCAAGGTAGATGCCTAAG--TTGATTTATA------GGTCGATTTCAGGGAAATAGTTGACTTTCAAATTGACTTCTGGAATATATT--TGACTTTGAATTCTTTGATGCCATATATAATATA----TAA-TGTTTGAACACACTGTTAAGACCATTTAAAA-----------------------ATACCAGTATTCTGTTTAGAGTTGTTGTTTTGCTACTATGTTAATGTCAGTAAAATAATGTCAATTGGTATGTTTACAATCTCATATAGAAAGGCTAAAACAATTCAATTAGAAAGATAAATA-TATCAGGAAGTATAGTCG--GACATTGTGTAACAGAAAACACAACATTTTGATT-ACACTC--ATCAAAATCAAAATGAGATTA-----CCTATTATCGAAATCTCGATTATCCCATCTTCAC------------CAACATGTAGATAATAT-TAGTCCAG-TCCTGCAA-CCAATTCTTCATCATCA---TCCATTACACATCTTCATCACCTGATATATCTCCATCTTCAGTGTCATCGGTGTCATCCATAACA----------CTT----------ACTACCATCACAT-T--T--CCAT------CAT---CATCATTATGATC--A-A----CACTTTTATCATCAT-A--ATC--AATCACC--TATCATCAGTATCATCTGCAGTTTCATTG-ACACCAT-CCTTA----AC-A-TTACCCGATACCTTCTT-ATCATTACA--ATCAT---------TAT-CCTTAG---------C---GCC-----AACATCATCATCACTGTAA----TCATCAT---CAT----CATCAGCAGCAGCA--A--ACATCTTCTTGTGTCCAGTAAT----ACCTCCATCTCCAGTTCCATTGACACCATCCTAGCATTACC----T-AATACCTTTTTATCCTTACCATCATCATTTTATCACCAACATTATCATCATTAGCAT-A--TA-TAT-C-TTT-ATCCATCCAGTATTATCTCCATCTCGAGTTCCATTGATGCTATTCTTACAGTAC-TTG-ATACAACGTTATCCTTACCATCATCATTCTGATCACCAACATCA---TCTTCAATGTAATCATCTCATCCGTCCAGTGTTATTTCCATTTCAAGTTTCATTGGTGCCATTCTAACATTACCTTTTCCCACTTTATCCCTACCATCATTTTTATCACCAACATGATCTTCAATGTAATCATCCTCATCAGCAGCATACATC-TCATCTGTCCAGTATTATTTCCATTTCCAGTTTCATTGGTGCCATTCTAACATT-GCCTTTTACCACT----ATATCCTTACCATT-ATCATTCTTATCACCAACATCATC-ACTATAATCATCATCACCATCAGCAGCAGTA-TACATCTTCATCCATCCATGATTATC-TCC-CAACTCAAGTA-TCGTTGACGC-CATTCTTACATTACCCAATACCACCTTATTCTTA-GC--AT---TATCATCAT---CACCAACATAG--A-CA-CTGCA--A--TCAT-----CAT--C-AT---------CAGCA--------------------GCATG-TATCTTCAT--GCATC--TTGT---ATTATGT-C---CAT--CTCCAGTT-TTATTGACCGTATACCA-C-TTTATAC-TTACCATC-TGTATCCAT-A-T-A-CCAAAAT-----CCTCATCACTGTGATCA------TCATC-ATCATCATCATCAACAGCAGCAGCAGTATATCTTCATCCATCC--AGTTTTATCACCATGTCCAGTCCCATTGACACCATCATAGCATTACCGTAT-------ATCACTT-TATACTTACCATCTGTATCCATA-TACCAACATCat
gi|20 : acactccttacctgaatctatacgttggcaatcagtggatcccgtatgtaaaactttcgaaggactgtgcttctgtttctgaggaccgtCCA-GCATCAC---CATC--------A-T-AATAATCAT-----CATCATC------ATAA------TCGTT-GTCGTCGTCGTAATGAACAGCCGCA-TATT--TTCAT---TTA--TATATTAACT
gi|21 : TTCTGGCACATGGTAGACTTCAG--AA--TTGGCAT------TTTATTTCTGTCACATGGTAGACTTCAGTATCGGCAT----TTCATTTCTGGCACAT-G--GTAGACTTCgatatatgattcagttacat
gi|22 : tgtttaatGTT-CAATTTGC-----ATTA-TGTTTA-CTATT-------TG--------AAT-A-T-----T-----CAT--TC------GT-A------TCATC-ATCATCATCATCATCAT---CGACA-T-TGTCTTCAT--A--------ATCATCTCCAT
gi|22 : atgt------CAT---TATGTTTACTATTTGA-ATATTCATTCGTATCATCATCATCATC---ATC------ATCATCGACATTGTCTTCAgag
gi|22 : atgtgttcaatttgTCATTCGTATCATCATCATCATCATCATCATCGACA---TTGTCTTCATAATCATCTCtaatcatctccatgag
gi|23 : atgtgttcaatttgcattatgtttactatttgaatatTATTACCATCATCAGCAGCAGCATATcatgag
gi|23 : ATTAC-----------CATCATCAGCAGCAGCAT-A--TT-TAT-CATTGCATTTTATCATTATTATttatcattgcattttatcattattataactgttgttattactatcattataatcattgttatcgttat
gi|24 : tCAT---CAGCATTAGCATTATCA-CAATC--A--TCAT-----CAT--C-ATCGATATCAACAGCAGCAGC---ATAGCaactgttgttattactatcattataatcattgttatcgttat
gi|24 : CAT---------TAG-CATTAT---------C---ACA-----ATCATCATCATCATCGATA----TCAACAG---CAG----CAGCAT-AGCCACC--ACCACAT--TCTcaccaccacattctacaacatcaacagcaga
gi|24 : catcagTTATCACA--ATCAT---------CAT-CATCAT---------CGATATC-----AACAGCAGCAGCATAGCCA----CCACCA----CATTCTACAACATCAACAGCA--G--Aacaacatcaacagcaga
gi|25 : catcagcattagcaAGAA--GTAGTAGTAGTAGCATG-TGTTGTCATTAACTTCATTATG---GTCATTT-T---CATTATTCCATTT-TTATCGCC-----ATTA-T-TGT---CATTAC---C-
gi|26 : TTCTTAACCTAATCAATACAATCAT---CAACACCATCACAATCA-CTATA--A--CCAA-----CAT--C-AGCATTATCATCAGCAGCAGCA--ACAGCAGAAGatc
gi|27 : tCATTTT---T-TG--------C-T-T-TTATTAT-----CATTATC------AGCA------TCATC-ATCATCATAATAATCACCATCATCA-TA
gi|27 : TTATCATTATCAGCATCATCATCATCATAATAATCA---CCATCATCATAATCACCatcacc
gi|28 : cattttttgcttttaATAC-ATCATAATCATTATGATCTTGATC---GT----G-----------ATAATCACAATCATCATCAGCAGCAACAGCAGCA
gi|29 : TTATCATTATCATCATGCTCAGCATCATCA---CTATCATGAAAATCATTTta
gi|3 : ttaTTCTGAGGA--TCGTCTTTCTAGGTTGATCTCTGGGACATGGTTGATCTCTGG---GACAT--GGTTGATTTCTGGGACAT-G--------------GTTGACTTCTG-GGATACA--------GCCGACTTCT-----------TT-G--TTGACATCTG------AGTCAACTTCTGGGACATGGTTGACTTCTGAATTAACTACTGGAATATATC--TGA---------------TGCCGTATAAAATATACAGTTAAGTTTTTAAA---ACTGTTAAGACCAATTAAAACTACATA--------TCAGGAAAATACCAGAATACTGTTTA-AGTT-TTGTTTTGCTACTATGTTAGTGTCGGTACAATAACGCCAATAAGTATGTTTGTAATCTTATGTAGAGA--CTAGAGCAATTTAATTACAAAGATAA--A-TATTATGAAGAATGG--A--GATATTattaatattaatatc
gi|31 : catactccttacctggatctatacctggaactataggtatgtggccaatcagtggatcccaaatgtaaagctttcaaatgaatggacttctgt--ATCGT---------CGT-CGTGGT---------C---GTCCGGTTGTCGTTGTCGTCGTCGTCA----TTATCAT---CAT----CATCATCAGC
gi|32 : AG--CAGCAGCAGCAGCATCATTAT--
gi|32 : CAGCAGCAGCAGCATCA--T--TATCC-TCG-AT--GT----TATTATCcctcgatgttattatcataaaattataattatcact
gi|33 : agGTCGTCGTCGTCGTCGTTGTTGTCATCATCATCAGCAACA--GCAGCAGCAGCAataaaattataattatcact
gi|4 : CAACAGAAGCAGTAGATATCTTCATCCGTCCAGTATT--ATATCCTTCTCGGGTCCCATTGACACCATCCTAG-CATGACTTTATATCACTTTATACTTACCATCTGTATCCATAT-ACCAACATCCTCATCACAGT------GNNNNNNNNNNNNNNNNNNNNNNNNNACAACAACAACAGCAGCAGAAGATATCTT-AATCAGTCCAGTATTATCTCCATCTGCAGTCCCATTTACACCATCTGAACATAACCGTATATCACTTTATACTTACCATCTGTATCCAT--ATACTAGCATTCTTATGACTGTGATCATCATCATCATCAACAATAACAGAAGTATATACCTTCATCCGTCCAGTATTAg
gi|5 : aCACCA-TTACCATCATTT-TAATGACCATACTGATCATTCTCATCTTTACTGTC--AGA----TGCTCT-A-CATAATCATCAGC--AG-CAGCAGTAACAGCAGCATTATNNNNNNNNNNNNNN-NNNNNNN-N-NNN----NN-N-N-NNNNNNNNNNNNNNN-NNNNNNNNN--NNNNN---------N-T-TGTCAGGAGCAGCAGC---AGC-----AGCATGATCAACATCTTGA----TCAACAT---CAT----TATCATCATTATCATTA--TCAC--TGTTATGACCA-TAATGATCATTTTCATCTTTACATC--TTGTC-----CCTGG--TTGAAATCTC-AATATC--ATCATCATTATCATCATCAT-----------CATCAGCAGCAGCAGTGT-AACCACCAT-C-TTA-ATCtatccatctcgagtcccattgacacca
gi|5 : cattatcattatTCAG--GAGCAGCAGCAGCAGCATGATCAACATCTTGATCAACAT-CATTAT------CATC---ATTATCATTATCACTG-TTATGACCATAA--TGAT--CATTTTCATC-TTTACATCTTGTCCCTGGTTGAAAT-CTCAATATCATCATCATTATCATCATCATCATCAGCAGCAGCAGTGTAACCACCATCTTAATCATTATCattatcatca
gi|6 : cattatcattatcaccattaccatcattttaatgaccatactgatcattctcatctttactgtcagatgctctacataatcatcagcagcagcagtaacagcagcattatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnttgAACAGCTGCTTTCTATTATCAACATCATCACTAC--TTTATCTTTCTAGTCATCAGCATGATCTATTTTTATCAACAT---CATCATTACC---ACTATATCATCATC-ATC-ATCATTATCGTCCTCAT---AAGCAGCTGATTATGTGTAT--TTGTATTAGCTGCTATTAATTT--TGTT---C--ATAAACATCATCAT---CT------TCATTATGA-CTATATCA--TCAT-----CAT--T-GTCATCATCATCATCCTCCTCA--TTAGCAGCTG-ATTATG-TGTATTT-------------GT---ATTAGCTGC---TAT--T---AATT-TTGT----------TCA-T-A--A-ACATCAT---C-----------A-TCA-TCATTATGACTATATCATC------ATCA------TTGTC-ATCATCATCCTCCTCATatca
gi|7 : atctcaaccatcagcTATTGTTAT-GTCATCAT---AATTATC---ATGATTGACATC----GTAATGTCGT---A-ATCAT----TA----TC-A-TCGCTGGTTACATT-------ATCATA--TTCAT---------CAT-CACTG---------------CT-----AACACCATCGTCATCGTAA----T-ATCATAGGCAT----CATCAt
gi|7 : attctcaaagttattggATTATCATCGCTGGT--T--ACAT------TAT---CATATTCA---TC--A-T----CACTGCTAACACCATCGTCATCGTAAT-------ATCATAGGCATCATC-AAAATTACAGTGTACATCAA-C-TTAGACAAC-AGT-GTCAGAT---TTATTATTAATTGCATTATCATAAGTAATGACAT-CGTTAT---------C---ATC-----GACATCATCACCAATATAT----TCATTAT---CGT----CATAATAATTAGCA--aaattacagtgtacatcaacttagacaacagtgtcagatttattattaattgcattatcataagtaatgacatcgttatcatcgacatcatcaccaatatattcattatcgtcataataattagcatcgtcaataacatcg
gi|8 : attctcaaagttattggtattgttatgtcatcataattatcatgattgacatcgtaatgtcgtaatcACAATTTAATTATGAAGATAGATACTGT--GAAAGAAACGTAAATGGCATTAT-TAA-AGAAAGCA-----TTTT-ATTGACACTCTTGACGAGA--AAAA----ATTAACTTACCTATTATCCAAGTCTTGGCTACCCCAACTTTAT------------CAATATTTGAATGACTTCTAACCCAG-G------ATCCGATTCTTTACTATCACACTCCATCATACATCTTTATCTACTGGCTTATTTCTATCTTCAGTTTCATCGATGTCATCCATAACATTACTTGtcgtcaataacatcg
gi|9 : TTTCA-TC--ATCAACACCACCATTATCATCAACAATATCATCA-CCAAC--A--TCATTAA--CAA--C-ACCATTGTCAACAGCAACAACA--ANNNNNNNNNNNNNNNN-NNNNNNNNN--NNNNN--NNNN---NNNNNNN-N---NNN--NNNNNNNN-NNNNNNNN-----NNNN-N-NNNN-NNNNNNN---N-NGCAACAACAA-T-T-TCAGCAT-----CATTATC------ATCAACACCACCACC-ATCATCATCATAAT
gi|9 : gcttctgTCAGCATCATTATCATCAACACCACCA---CCATCATCATCATAAT----TTTGTCAAGTCTTACTtttgtcaagtcttactaaatac
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|17 ): CACTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCCACCGTTATCATCATACCCCATCATCAGTGCTAT
Unaligned ( gi|30 ): TTGTCATTATTATCATTATTGTTATCAGTAATATCCTCTTTTTTTCCATCTCGCCCTCCTCCTCCT
Alignments
lowQualScore : 111111 22222 3333 11 2222222 22222222 11111111111111111 222222 11 2 22222222 6666666666666 1 1 11111 1 11 11 666666666666 555555555 222 1111111111 22222222222 1111111 222222 111 11 222222222 222222222222 22222222222222222 111111 222222222 2222222222 11111 1111 11 333 2222 333333 66666666666 11111 1 111 1 222 1 1111 222222 111 1 1 111 11111 1 11111 1 11 1 111111 11111 4444444444444444444 111 111 5555555555555555555555555555555555555555555555555555555555 11111 1 22 1111 4444444 1111 11 111 222 1 2222 1 1 11 55555555555 11 222222 11 11 11 1 222222 222 11111 1 11 111 1 88888888888888888888 22222 11 111 222 1 88888888888888888888888888888888 1 1 222 1 11 77777777777777777777777
lowQualScore : 1 3 222222 1 33333 1 1 1 5555 11 1 8 5555555 4 1 8 0 99999999 1 77777777777777777 0 333333 1 0 0 11 6 6 0 00000000 7 6 6 9999999999999 2 6 0 0 0 6 1 3 0 6 0 44444 6 6 6 6 3 88 0 7 11 999999 888888888888 1 6 777777777 0 333 1 3333333333 77777777777 9999999 333333 444 11 333333333 1 3 2 555555555555 1 4 2 8 2 77777777777777777 1 2 0 222222 0 6 77 000000000 2 3333333333 2 22222 1 888 1 1 0000 2 888 1 11 000 6 8888 1 6 7 6 777777 7 33333333333 0 88888 3 1 5 777 0 4 0 0 3 5 111 1 1 1 5 22 1 0 1 0 0 6 0000 1 888888 6 666 0 4 1 1 0 22 777 88888 11 6 2 1 44444 6 3 0 44 2 3 1 7 333333 5 3 6 2 88888 4 66 66 0 11111 66 4 0 1 777 888888 2 88 0 3333333333333333333 5 555 111 5 7777777777777777777777777777777777777777777777777777777777 777 11111 777 4 55 1 2 4 5 1 11 7777 1 1 1 0 0 6 3333333 8888 44 1 6 1 66 1 1 0 44 11 2 1 999 000 0 0 1 0000 2 1 7777 0 0 0 99 22222222222 1 1 33 1 2 333333 3 11 33 88 5 1 999999 111 1 1 1 77777 1 5 1 77 222 3 1 66666666666666666666 1 66666 1 88 999 1 1 2 22 111 1 1 22 1 5 1 1 66666666666666666666666666666666 1 5 5 1 22 1 1 1 2 22 1 1 1 111 5 88 77777777777777777777777 1 1 1 1
lowQualScore : . . ...... . ..... . . . .... .. . . ....... . . . . ........ . ................. . ...... . . . .. . . . ........ . . . ............. . . . . . . . . . . . ..... . . . . . .. . . .. ...... ............ . . ......... . ... . .......... ........... ....... ...... ... .. ......... . . . ............ . . . . . ................. . . . ...... . . .. ......... . .......... . ..... . ... . . .... . ... . .. ... . .... . . . . ...... . ........... . ..... . . . ... . . . . . . ... . . . . .. . . . . . . .... . ...... . ... . . . . . .. ... ..... .. . . . ..... . . . .. . . . . ...... . . . . ..... . .. .. . ..... .. . . . ... ...... . .. . ................... . ... ... . .......................................................... ... ..... ... . .. . . . . . .. .... . . . . . . ....... .... .. . . . .. . . . .. .. . . ... ... . . . .... . . .... . . . .. ........... . . .. . . ...... . .. .. .. . . ...... ... . . . ..... . . . .. ... . . .................... . ..... . .. ... . . . .. ... . . .. . . . . ................................ . . . . .. . . . . .. . . . ... . .. ....................... . . . .
lowQualScore : 0 2 444444 4 22222 0 4 4 8888 00 0 0 2222222 2 0 0 8 00000000 0 88888888888888888 8 000000 4 8 8 00 4 7 7 33333333 3 7 7 7777777777777 0 7 7 7 7 7 0 2 0 5 8 22222 7 7 7 7 3 33 7 3 00 333333 333333333333 0 7 000000000 7 333 0 7777777777 66666666666 5555555 000000 000 44 222222222 0 5 5 000000000000 7 8 8 0 2 44444444444444444 0 8 2 000000 2 7 99 000000000 2 1111111111 2 55555 0 888 2 0 6666 2 888 0 00 777 7 3333 0 7 3 7 000000 3 33333333333 7 77777 7 0 5 777 2 3 1 3 4 5 000 0 0 0 5 00 0 7 0 7 7 7 8888 0 000000 5 222 0 2 2 2 0 55 555 55555 33 7 0 0 33333 7 3 7 33 0 7 0 3 000000 0 7 6 1 66666 4 11 11 8 11111 11 4 1 1 000 666666 6 66 9 3333333333333333333 7 777 000 0 8888888888888888888888888888888888888888888888888888888888 888 11111 888 4 55 4 1 3 7 4 22 6666 0 0 0 7 7 7 3333333 7777 77 0 7 4 00 4 4 8 66 00 2 0 555 555 2 0 0 5555 5 0 2222 0 0 2 88 55555555555 2 0 88 0 0 888888 2 00 88 33 0 0 000000 000 0 0 0 00000 0 0 0 55 333 3 0 00000000000000000000 0 00000 0 55 555 0 0 5 00 000 0 0 00 0 0 0 0 00000000000000000000000000000000 0 0 0 0 00 0 0 0 5 00 0 0 0 000 0 00 00000000000000000000000 0 0 0 0
consensus : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTCTGGNACATGGTTGACTTCTG--GA--TCGGCTT-CTAGGTTNACTTCTGGGACATGGTTGACTTCTGGA--GACAT--GGTTGATTTCTGGNACAT-G--TT-NACTTCCGGGTNGACTTCTG-GGACATA--------GCNGACTTCTAGGTAGATGCNTTAG--TTGATTTCTG------GGTCGACTTCTGGGAAATGGTTGACTTCCGAATTGACTTCTGGAATATATT--TGACTTT-AATTCTTTGATGCCGTATATAATATACAGTTAAGTTTTTAAACACACTGTTAAGACCATTTAAAACTACATA--------TCAG-AAAATACCAGTATTCTGTTTAGAGTTGTTGTTTCGCTACTATGTTAATGTCGGTACAATAACGTCGATTGGTATGTTTACAATCTCATATAGAGAGGCTAAAACAATTTAATTANAAAGATAAATA-TATCAGGAAGAATAGTCA--GACATTGTGTAACAGAAAACACAACATTTTGATT-ACACTC--GACGAAATCAAAATGAGATTAACTTACCTATTATCCAAATCTCGATTATCCCATCTTCAC------------CAACATGTAGATAATNTCTAGTCCAGN------A-CCGATTCTTCATCATCA---TCCATTACACATCTTCATCACCTGATTTATCTCNATCTTCAGTGTCATCGGTGTCATCCATAACATTACCTGATACTTCCACACACCAACTACCATCACTT-T--T--CCAT------CAT---CATCTTTACGATC--A-A----CACTNTTATCATCATCATCATC--AATCACC--TATCATCGGCATCATCTGCAGTTTCATTG-ACACCAT-C-TTA----AC-A-T-GCCNGATACCTTCT-T-TTCATCG-CA--ATCAT---------CATCGTTAT---------CGCC-----AACA---TCATCGTCATCGTNA----TCATCAT---CATCATCATCAGCAGCA--AACAC--TCTTGTGTCCAGTAAT----ACCTCCATCTCCAGNTCCATTGACACCATCCTAGCATTAAA----C-AATACCTTATTATCCTTACCATCATCAT-----------CATCAGCAGCAGCAGTATA--TA-TATCTTNATCCGTCCAGTATTATCCCCATCTCNAGTTCCATTGACGCCATTCTTACAGTAC-T-GATACAACGTTATCGTTATCATCATCATCATCATCACCATCATCATCGTCATCGTAATCATCTCATCCGTCCAGTGTTATTTCCATTTCAAGTTTCATTGGTGCCATTCTAACATTACCTTTTCCCACTTTATCCCTACCATCATTTTTATCGCCAACATGATCTTCANTGCAATCATCNTCACCANCAGCATACATCTTCATCCGTCCANNGTTATCTCCATCTCNAGTTTTATCGNCGCCGTTCTAACATC-GCCTTNTACCACC----TTATCGTTAC--TC-ATCGTTCTTGTCACCAACATCATC-ACTATAATCATCAT---CATCAGCAGC---A-TATATCTTCATCCATCCATNATTATC-TCC-CATCTCAAGTA-CCGTTGACGN-CATCCTTACATTACCCGATACCANCTTATTCTTA-CC--ATCAACANCATCATCANCAACATCA---TCATCA-CTACA--A--TCAT-----CAT--C-ATCATCATCAACAGCAGCAGCA--GTAGCAGCAGCATCATG-TATCTTC-AT--GCGTC--TAGT---ATTATCT-C---CATC--TCCAGTT-TTATCG--------GC-----ATC-A----TTCTA-ACATTAC---C-TG-------AT-A-TC---ATCAT-----CATCA---TCATCATCGTC-ATCATCA--TCGTCATCANCAGCAGCA-TAT-TCTTCATC-CATTA--AGTATTATCTCCATNTCCAGTCCNATCGACACCGTCATAACATTACCTTAT-------ATCACTT-NA-ACTTACCATCGNCATCNTTACCACCAACGTCATCGCCACCGTCGTCGTCGTCGTCATCGCCAGCGNCA--GCAGCAGCANCAT--ACATCTTCACCGATCCACCATTATC-TCCNTNTC-CAGCNTCATTGCCACCATC-TTAAC-ATTACCT-ATACCA-GCTTATACT-TATCAACANCAT--CANCACCGC--TACTCATCACCATCATCAG--CAGCAGCAGCAGCAGCATTAT--ATATCTTCATC--CATCCANTATAACCTCCATCTCTANTNCCATTGNCACCGATTNTGACCATNACCTGATACCATCTTAATC-TTANCATCTTGTCC---GT----AT-C-CAA---CATCATCATNATCATCATCAGCAGCAGCAGCAGCAGCGTAACCACCATCTTNACCATTATCCAGTATTTTCTCCATCTCCAGTCCAATTGACCCAATTCTAAATTTACCTGATACCACCCAATACTTACAACCATCATCCTTATCACCAACATCATCATTAATGTTATTACCATCAACAGCAGCAGCATATATCTTCACCCGTCCAGTATTTTNTNTCCNTCTCCGGTCCNNTTGACACCATCCTAGACATNACCTNATATCACCTTATACTTACCATCNNCATCCNTATCACCNACATCCTCATCACNGTT-----GNNNNNNNNNNNNNNNNNNNNNNNNNACAACAACAACAGCAGCAGAANATATCTTCAACCAGTCCAGTATNATCTCNNTCTNCAGTCCCANTNACGCCATCCGAACATAACCNNACACNANCTTATACTTACCANCTGTATCCATCAACACTGGCATTCTTATGACTGTGATCATCATCATCATCAGCAGTAGCAGNAGCATATACNTTCATNCGTCNAGTATTA
Reference ( family-1427 ) : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTCTGGNACATGGTTGACTTCTG--GA--TCGGCTT-CTAGGTTNACTTCTGGGACATGGTTGACTTCTGGA--GACAT--GGTTGATTTCTGGNACAT-G--TT-NACTTCCGGGTNGACTTCTG-GGACATA--------GCNGACTTCTAGGTAGATGCNTTAG--TTGATTTCTG------GGTCGACTTCTGGGAAATGGTTGACTTCCGAATTGACTTCTGGAATATATT--TGACTTT-AATTCTTTGATGCCGTATATAATATACAGTTAAGTTTTTAAACACACTGTTAAGACCATTTAAAACTACATA--------TCAG-AAAATACCAGTATTCTGTTTAGAGTTGTTGTTTCGCTACTATGTTAATGTCGGTACAATAACGTCGATTGGTATGTTTACAATCTCATATAGAGAGGCTAAAACAATTTAATTANAAAGATAAATA-TATCAGGAAGAATAGTCA--GACATTGTGTAACAGAAAACACAACATTTTGATT-ACACTC--GACGAAATCAAAATGAGATTAACTTACCTATTATCCAAATCTCGATTATCCCATCTTCAC------------CAACATGTAGATAATNTCTAGTCCAGN------A-CCGATTCTTCATCATCA---TCCATTACACATCTTCATCACCTGATTTATCTCNATCTTCAGTGTCATCGGTGTCATCCATAACATTACCTGATACTTCCACACACCAACTACCATCACTT-T--T--CCAT------CAT---CATCTTTACGATC--A-A----CACTNTTATCATCATCATCATC--AATCACC--TATCATCGGCATCATCTGCAGTTTCATTG-ACACCAT-C-TTA----AC-A-T-GCCNGATACCTTCT-T-TTCATTA-CA--ATCAT---------CATCGTTAT---------CACC-----ANCA---TCATCATCATCGTNA----TCATCAT---CATCATCATCAGCAGCA--AACAT--TCTTGTGTCCAGTAAT----ACCTCCATCTCCAGNTCCATTGACACCATCCTAGCATTAAA----C-AATACCTTATTATCCTTACCATCATCAT-----------CATCAGCAGCAGCAGCATA--TA-TATCTTGATCCGTCCAGTATTATCCCCATCTCNAGTTCCATTGACGCCATTCTTACAGTAC-T-GATACAACGTTATCCTTATCATCATCATCATCATCATCATCATCATCATCATCGTAATCATCTCATCCGTCCAGTGTTATTTCCATTTCAAGTTTCATTGGTGCCATTCTAACATTACCTTTTCCCACTTTATCCCTACCATCATTTTTATCGCCAACATGATCTTCANTGCAATCATCNTCACCANCAGCATACATCTTCATCCGTCCANNGTTATCTCCATCTCNAGTTTTATCGNCGCCGTTCTAACATC-GCCTTNTACCACC----TTATCGTTAC--TC-ATCGTTCTTGTCACCAACATCATC-ACTATAATCATCAT---CATCAGCAGC---A-TGCATCTTCATCCATCCATNATTATC-TCC-CATCTCAAGTA-CCGTTGACGN-CATCCTTACATTACCCGATACCANCTTATTCTTA-CC--ATCAACACCATCATCANCAACATCA---TCATCA-CTACA--A--TCAT-----CAT--C-ATCATCATCAACAGCAGCAGCA--ATAGCAGNAGCANCATG-TATCTTC-AT--GCGTC--TAGT---ATTATCT-C---CATC--TCCAGTT-TTATCG--------GC-----ATC-A----TTCTA-ACATTAC---C-TG-------AT-A-TC---ATCAT-----CATCA---TCATCATCGTC-ATCATCA--TCGTCATCATCAGCAGCA-TAT-TCTTCATC-CATTA--AGTATTATCTCCATNTCCAGTCCNATCGACACCGTCATAACATTACCTTAT-------ATCACTT-NA-ACTTACCATCGNCATCNTTACCACCAACGTCATCGCCACCGTCGTCGTCGTCGTCATCGCCAGCGNCA--GCAGCAGCANCAT--ACATCTTCACCGATCCACCATTATC-TCCNTNTC-CAGCNTCATTGCCACCATC-TTAAC-ATTACCT-ATACCA-GCTTATACT-TATCAACANCAT--CANCACCGC--TACTCATCACCATCATCAG--CAGCAGCAGCAGCAGCATTAT--ATATCTTCATC--CATCCANTATAACCTCCATCTCTANTNCCATTGNCACCGATTNTGACCATNACCTGATACCATCTTAATC-TTANCATCTTGTCC---GT----AT-C-CAA---CATCATCATNATCATCATCAGCAGCAGCAGCAGCAGCGTAACCACCATCTTNACCATTATCCAGTATTTTCTCCATCTCCAGTCCAATTGACCCAATTCTAAATTTACCTGATACCACCCAATACTTACAACCATCATCCTTATCACCAACATCATCATTAATGTTATTACCATCAACAGCAGCAGCATATATCTTCACCCGTCCAGTATTTTNTNTCCNTCTCCGGTCCNNTTGACACCATCCTAGACATNACCTNATATCACCTTATACTTACCATCNNCATCCNTATCACCNACATCCTCATCACNGTT-----GNNNNNNNNNNNNNNNNNNNNNNNNNACAACAACAACAGCAGCAGAANATATCTTCAACCAGTCCAGTATNATCTCNNTCTNCAGTCCCANTNACGCCATCCGAACATAACCNNACACNANCTTATACTTACCANCTGTATCCATCAACACTGGCATTCTTATGACTGTGATCATCATCATCATCAGCAGTAGCAGNAGCATATACNTTCATNCGTCNAGTATTA
gi|1 : TTCTGAGGAC------------CGCATCTCCACGTACATGCGTAAAAATTG--TTCTGAGATATGGTTGACCTTT----AA--GTCGACTTCTGTGTTTACTTCTGGAACATGGT--TGATTT
gi|1 : tgtTTCTGAGATATGGTTGACCTTTA--AG--TCGACTT-CTGTGTTTACTTCTGGAACATGGTTGATTTCTGAA---ACAT--GGTTGACTTCTGGAACAT-G--TT-TTTTTCTGGATAGACTTCTG-G-ACATA--------GCAGACTTCTAGATAGATGCCTTAG--TTGATTTCTT------GGTCGATTTCAGGGAAGTGGTTGACTTTCAAATTGACTTCTGGAATATATT--TGACTTTCAATTCTTTGATACCATATATAATATACAAT---GTTT--AAACACACTGTTAAGACCATTTAAAACTACATAATATTTTATCAGTAAAATACCTGTATTCTTTTTAAAGTTGTTGTTTCACTACTATGTTAATGTCGGTACAATTATGTTGACTGGTATGCTTACAATCTCATATAGAGAGGCTAAAACAATTTAATTAGAAAGATAAATA-TATCAGGAAGAATAGTCA--GACATTGTGTAACAGAAAACACAACATTTTGATT-ACATTC--GACAAAATCCTATTAAGATTAACTTA----TTATCCAAATCTCGATTATCCCATCTTCACCAACAGCTTCACCAACATGTAGATAATGTCCAGTCCAGC------AACCAATTCTTCATCACCA---TCCATTACACATCTTCATCACCTGATTTATCTCAATCTTCAGTGTCATCGGTGTCATCCATAACATTACCTGATACTTCCACACACTAACTACCATCACTT-T--T--CCAT------CAT---CATCCTTATGATC--A-A----CACTTTTATCATCATCATCATC--AATCACC--TATCATCAGTATCATCTGCAGTTTCATTG-ACACCATCC-TTA----ACAA-T-GCCCGATACCTTCT-T-TTCATTG-CA--ATCAT---------CATCCTTAT---------CACC-----AACA---TCATCATCACTGTAA----TCATCAT---CATCATCATCAGCAGCA--AACA---TCTTGTGTCCAGTAAT----ACCTCCATCTCCAGCTCCATTGACACCATCCTAGCATTAAA----CAAATACCTTATTATCCTTACAATCATCAT-----------CATCAGTAGCAGCAGTATA--TA-TATCTTGATCCGTCCAGTATTATCCCCATCTCCAGTTCCATTGACACC-TTCTTACAGTACTT-GATACAACGTTATCCTTACCATCATCATTATGATCACCAACATCATCATCACTGTAATCATCTCATCCGTCCAGTGTTATTTCCATTTCAAGTTTCATTGGTGCCATTCTAACATTACC-TTTCCCACTTTATCCCTACCATCATTTTTATCGCCAACATGA---TCACTGCAATCATCATCACCATCAGTATACATCTTCATCCGTCCATGGTTATCTCCAACTCAAGTATTATTGACACCATTCTAACATT-TCCCGGTACCACC----TTATTCTTAC--TC-ATCATTCTTATCACCAACATCTTC-ACTGCAATCATCAT---CATCAGCAGC---A-TGTATCTTCATGCGTCTAGTATTATC-T-C-CATCTCCAATT-CTATTGACAA-CAACCTAACATTACCAGATACCAGCTTATTCTTA-CC--ATCAACAACTTTATCGCCAACATCA---TCATCA-CTGCA--A--TCAT-----CAT--C-ATCATTATTAGCAGCAGCAGCA--GTAGCAGAAGCAGCATG-TATCTTT-AT--GTGTC--TAGT---ATTATCT-C---CATC--TCCAGTT-TTATTG--------AC-----AGC-A----TCCTA-ACATTAC---C-TG-------AT-A-CC---ACCTT-----CATCA---CCATCACTGTT-ATCACCA--TCATCATCATCAGCAGCA-TATCTCTTCACC-TATTA--AGTACTATCTTCATCTCCAGTTCACTTGACACCAGCCTAACATTACCTGAT-------ACCACCTAAA-ACTTACCATCATCATCTTTACCACCAACACCATCACCACTGTTATCTTCATCATCATCACCAGCTTCA--GCAGCAGCAGCAT--ATATCTTCACCTATCCAGTATTATC-TCCTTCTC-CAGTCTCATTGACACCATC-CTAAC-ATTACCTGATACCA-GCTTATACT-TACCAACATCAT--CAACACTGTGATACTCATCACCATCATCAG--CAGCAGCAGCAGCAGCATTAT--ATATCTTCACC--TATCCAGTATAACCTCCATCTCTAGTCCCATTGAC-CCAATTCTAA-CATTACCTAATACCACCTTAAAC-TTACCATCTTGTCC---AT----ATAC-CAA---CATCATTATCATCATCATCAGGAGCAGCAGCAGCAGCATA-----TATCTTTACC--TATCCAGTATTTTCTCCATCTCCAGTCCAATTGACCCAATTCTAAATTTACCTGATACCACCCAATACTTACAACCATCATCCTTATCACCAACATCATCATTAATGTTATTATCATCAACAGCAGCAGCATATATCTTCACTTATCCAGTATTTTTTCTCCATCTCCAGTCCATTTGACACCATTCT-GACATTACCTGATATCACCTTATACTTACCATCATCATCCTTATCATCTACATCCTCATCACTGTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTATATCTTCAACTA-TCCAGTATAATCTCATTCTCCAGTCTCAATGATGCCATCCTAACATAACCTGACACAAGCTTATACTTACCAAC---AT-CATCAACACTG-----------------------ATCATCATCAGCAGTAGCAGCAGCATATATATTCATGTATCGAGTATTActgaaacatggttgacttctggaacatgtttttttctggatagacttctggacatagcagacttctagatagatgccttagttgatttcttggtcgatttcagggaagtggttgactttcaaattgacttctggaatatatttgactttcaattctttgataccatatataatatacaatgtttaaacacactgttaagaccatttaaaactacataatattttatcagtaaaatacctgtattctttttaaagttgttgtttcactactatgttaatgtcggtacaattatgttgactggtatgcttacaatctcatatagagaggctaaaacaatttaattagaaagataaatatatcaggaagaatagtcagacattgtgtaacagaaaacacaacattttgattacattcgacaaaatcctattaagattaacttattatccaaatctcgattatcccatcttcaccaacagcttcaccaacatgtagataatgtccagtccagcaaccaattcttcatcaccatccattacacatcttcatcacctgatttatctcaatcttcagtgtcatcggtgtcatccataacattacctgatacttccacacactaactaccatcacttttccatcatcatccttatgatcaacacttttatcatcatcatcatcaatcacctatcatcagtatcatctgcagtttcattgacaccatccttaacaatgcccgataccttcttttcattgcaatcatcatccttatcaccaacatcatcatcactgtaatcatcatcatcatcatcagcagcaaacatcttgtgtccagtaatacctccatctccagctccattgacaccatcctagcattaaacaaataccttattatccttacaatcatcatcatcagtagcagcagtatatatatcttgatccgtccagtattatccccatctccagttccattgacaccttcttacagtacttgatacaacgttatccttaccatcatcattatgatcaccaacatcatcatcactgtaatcatctcatccgtccagtgttatttccatttcaagtttcattggtgccattctaacattacctttcccactttatccctaccatcatttttatcgccaacatgatcactgcaatcatcatcaccatcagtatacatcttcatccgtccatggttatctccaactcaagtattattgacaccattctaacatttcccggtaccaccttattcttactcatcattcttatcaccaacatcttcactgcaatcatcatcatcagcagcatgtatcttcatgcgtctagtattatctccatctccaattctattgacaacaacctaacattaccagataccagcttattcttaccatcaacaactttatcgccaacatcatcatcactgcaatcatcatcatcattattagcagcagcagcagtagcagaagcagcatgtatctttatgtgtctagtattatctccatctccagttttattgacagcatcctaacattacctgataccaccttcatcaccatcactgttatcaccatcatcatcatcagcagcatatctcttcacctattaagtactatcttcatctccagttcacttgacaccagcctaacattacctgataccacctaaaacttaccatcatcatctttaccaccaacaccatcaccactgttatcttcatcatcatcaccagcttcagcagcagcagcatatatcttcacctatccagtattatctccttctccagtctcattgacaccatcctaacattacctgataccagcttatacttaccaacatcatcaacactgtgatactcatcaccatcatcagcagcagcagcagcagcattatatatcttcacctatccagtataacctccatctctagtcccattgacccaattctaacattacctaataccaccttaaacttaccatcttgtccatataccaacatcattatcatcatcatcaggagcagcagcagcagcatatatctttacctatccagtattttctccatctccagtccaattgacccaattctaaatttacctgataccacccaatacttacaaccatcatccttatcaccaacatcatcattaatgttattatcatcaacagcagcagcatatatcttcacttatccagtattttttctccatctccagtccatttgacaccattctgacattacctgatatcaccttatacttaccatcatcatccttatcatctacatcctcatcactgttnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntatatcttcaactatccagtataatctcattctccagtctcaatgatgccatcctaacataacctgacacaagcttatacttaccaacatcatcaacactgatcatcatcagcagtagcagcagcatatatattcatgtatcgagtatta
gi|10 : tgtttctgaggaccgcatctccacgtacatgcgtaaaaattgATCGACATCGT-ATAACAATACTTTATCGACATAGTCATTG-CA-AACTATTATCGACATCGTCACTGCCAATGCCATTGCCACCGTTTTCGACATCGTAATTGTCATCGTCATTGCTG--ACGTTATTGACATTTTCATTGA--CACCATTATC-TCCAT-------CGTTATTGCCACCGTTATTGAT-ATTGTCA-ATATCA---TTG---T-TATCGACAGCGT--CATTGCCAT--T-TTCAT
gi|11 : ttTCATCATCATCGTCGTTGTCGTCGTCGCCGCC-GNNNNN--NNNNNNNNNNNNN--NNNNNNNNNNNNNNNCATTATTGTCATATTTATCACAGCATCATAATCATCATT-TTAAT-ATTAACT-ATACCGTGATCATA----ATCAATATCATACCATTACCAC---AGTCATCATCATTATCGGTATAGCAGCAACATCAATATTAT--ATAGCAGCATC--t
gi|12 : aCATTGTTGATTTCTT--GA--TTAACTA-CTAGGCTGACATCTTAGATATGGTTGACTTCTGGGCTGGCATCTGATATATTGTTGGTTTAT-GGTTT-TACTCCCGGGTTGACTACTA-GGATATGACTTAGAGGCTGACTTCT-GGTA----CATTA---TTGATTTCTG------AAACAACTTCTGGGAAATGGTTGACTTCTGGGCTGATATCTGG--TACATTGCTGATTTagaagacac
gi|13 : AACATCA---TCATCATCTACA--AATTCATGTTACCTT--CTAACATCATCTACATCATCAGCATTATATT--CAACATCATGATATCTTC-CA--ACATC--TA-T---ATCATCA-CTATCATC--TTCAATT-TCAT-G--------AT-----ATC------TTCTA-ATATCAA---CATT-------ATCA-TC---TTCAA-----CATCA---TGATAATCTTCCAACATCA--TCTAAATCATCACCATCA-TCT-TC
gi|14 : ccttgCAACAACATCAACACCACTATCAAC-----CATCAGCAATAGCACCA--GCAGCAGCACCAC---CACCGCCACCA--CCACCGTTACC-TCCAAGAC-CACCCTCA---CCACAATC-TCAACCACCACC----ACCA-AC--A-ACAATAACAACAACAT--CAACACCAC--TAC-CA--ACCATCATCAG--CAGCAGCAGTACCAGCAaaca
gi|15 : ---TCATCA-TTACA--A--CC-------CATAGC-TTCATCATCAACAGCAGCATCA--ATAGCATTCTCATCAT--CATCAAC-ATAAGTGGC---AGTGACATTATTT-CA--CACC--ATCAG-------CA--------GC-----ATCAA----TTC----CATTGT---A-TA-------A--A-TC---ACCAC-----CACCA---TCATCA--GTC-ATCATCA--TTGTCATCAgc
gi|16 : tTCAT---------CATCATTAT---------CAGC-----AGCA---GCATCTTTATCATTACTTTTTATCAT---TATCATTATTA
gi|16 : TTATAATAA-T-CGTACTGTATCATCATGATCATCACCATCACCATCACCATCATCATGGTAATGATAATGATtttttgttatcattatcattaccatgatgatggtgatggtgatggtgatgatcatgatgatacagtacgattattataa
gi|16 : tcatcatcattatcagcagcagcatctttatcattactttttatcattatcattattatttttgttTCATCATGATCATCACCATCACCATCACCATCATCATGGTAATGAT
gi|18 : tcatcatcattatcagcagcagcatctttatcattactttttatcattatcattattatttttgttatcattGTTATCATCA--------GT-----ATA-A----TC--A-ATATTA------TA-------AT-T-TC-----TAT-----CATCA---TAACCATGATC-ATCATTA--TTGTCATCATCAGCA--------TCCTCAT--CATTAATAGTATTATtacagtacgattattataa
gi|19 : ggctgctaaatttaatatcgttATCGCTATCACTAGCTTTTTCGTCAACGGT--AGCATC-AT-TTACATCA------TTATTGTTA---TC-GTCGTTGTCGGCGTCATCATCATC-ATCAAAATCATCAT---CATCAGCAGC---A-tatt
gi|2 : catcaccCATGTTTG-CTTCTG--GAACTTGGTT-----GGTTAACTTCTGGAACATGGTTGAATTCTGGA---ACAT--GGTTGACTTCTGAAACATAG--TT-GACTTCTGGATAGACTTATT-GGACATA--------GCAGACTTCAAGGTAGATGCCTAAG--TTGATTTATA------GGTCGATTTCAGGGAAATAGTTGACTTTCAAATTGACTTCTGGAATATATT--TGACTTTGAATTCTTTGATGCCATATATAATATA----TAA-TGTTTGAACACACTGTTAAGACCATTTAAAA-----------------------ATACCAGTATTCTGTTTAGAGTTGTTGTTTTGCTACTATGTTAATGTCAGTAAAATAATGTCAATTGGTATGTTTACAATCTCATATAGAAAGGCTAAAACAATTCAATTAGAAAGATAAATA-TATCAGGAAGTATAGTCG--GACATTGTGTAACAGAAAACACAACATTTTGATT-ACACTC--ATCAAAATCAAAATGAGATTA-----CCTATTATCGAAATCTCGATTATCCCATCTTCAC------------CAACATGTAGATAATAT-TAGTCCAGTCCTGCAA-CCAATTCTTCATCATCA---TCCATTACACATCTTCATCACCTGATATATCTCCATCTTCAGTGTCATCGGTGTCATCCATAACA----------CTT----------ACTACCATCACAT-T--T--CCAT------CAT---CATCATTATGATC--A-A----CACTTTTATCATCAT-A--ATC--AATCACC--TATCATCAGTATCATCTGCAGTTTCATTG-ACACCAT-CCTTA----AC-A-TTACCCGATACCTTCT-T-ATCATTA-CA--ATCAT---------TATCCTTAG---------CGCC-----AACA---TCATCATCACTGTAA----TCATCAT---CATCATCAGCAGCAGCA--AACATCTTCTTGTGTCCAGTAAT----ACCTCCATCTCCAGTTCCATTGACACCATCCTAGCATTACC----T-AATACCTTTTTATCCTTACCATCATCATTTTATCACCAACATTATCATCATTAGCATA--TA-TATCTTTATCCATCCAGTATTATCTCCATCTCGAGTTCCATTGATGCTATTCTTACAGTAC-TTGATACAACGTTATCCTTACCATCATCATTCTGATCACCAACATCATCTTCAATGTAATCATCTCATCCGTCCAGTGTTATTTCCATTTCAAGTTTCATTGGTGCCATTCTAACATTACCTTTTCCCACTTTATCCCTACCATCATTTTTATCACCAACATGATCTTCAATGTAATCATCCTCATCAGCAGCATACATC-TCATCTGTCCAGTATTATTTCCATTTCCAGTTTCATTGGTGCCATTCTAACATT-GCCTTTTACCACT----ATATCCTTACCATT-ATCATTCTTATCACCAACATCATC-ACTATAATCATCATCACCATCAGCAGCAGTA-TACATCTTCATCCATCCATGATTATC-TCC-CAACTCAAGTA-TCGTTGACGC-CATTCTTACATTACCCAATACCACCTTATTCTTA-GC--AT---TATCATCATCACCAACATAG-----A-CA-CTGCA--A--TCAT-----CAT--C-AT---------CAGCAG--------------------CATG-TATCTTC-AT--GCATC--TTGT---ATTATGT-C---CATC--TCCAGTT-TTATTG--------ACCGTATACC-A----CTTTATAC-TTACCATC-TGTATCCATAT-A-CCAAAATCCT-----CATCACTGTGATCATCATC-ATCATCA--TCATCAACAGCAGCAGCAGTATATCTTCATC-CATCC--AGTTTTATCACCATGTCCAGTCCCATTGACACCATCATAGCATTACCGTAT-------ATCACTT-TATACTTACCATCTGTATCCATA-TACCAACATCat
gi|20 : acactccttacctgaatctatacgttggcaatcagtggatcccgtatgtaaaactttcgaaggactgtgcttctgtttctgaggaccgtCCA-GCATCAC---CATC-------AT-AATA---ATCAT-----CATCA---TCATAATCGTT-GTCGTCG--TCGTAATGAACAGCCGCA-TAT-T-TTCAT----TTA--TATATTAACT
gi|21 : TTCTGGCACATGGTAGACTTCAG--AA--TTGGCAT------TTTATTTCTGTCACATGGTAGACTTCAGTATCGGCAT----TTCATTTCTGGCACAT-G--GTAGACTTCgatatatgattcagttacat
gi|22 : tgtttaat------CAT---TATGTTTACTATTTGA-ATATTCATTCGTATCATCATCATCATC---ATC------ATCATCGACATTGTCTTCA
gi|22 : atgtgttcaatttgTCATTCGTATCATCATCATCATCATCATCATCGACATTGTCTTCATAATCATCTCtaatcatctccatgag
gi|23 : atgtgttcaatttgcattatgtttactatttgaatatTATTACCATCATCAGCAGCAGCATATcatgag
gi|23 : ATTA--CCATCATCAGCAGCAGCA-TAT-TTATCATTGCATT-------TTATCttatcattgcattttatcattattataactgttgttattactatcattataatcattgttatcgttat
gi|23 : tACCATCATCAGCAGCAGCATATTTATCA-TTGCA--T--T--T-----TAT--C-ATTATTAT-AACattattataactgttgttattactatcattataatcattgttatcgttat
gi|24 : tattCATCAGCATTAGCA---TTATCA-CAATC--A--TCAT-----CAT--C-ATCGATATCAACAGCAGCAGC---ATAGC--CACCACCACA-T-TCTAC-Atgttgttattactatcattataatcattgttatcgttat
gi|25 : AGAA--GTAGTAGTAGTAGCATG-TGTTGTC-ATTAACTTCATTATG---GTCATTT-T---CATTATTCCATTT-TTATCG--------CC-----ATT-A----TTGT---CATTAC---C-acatcaacagcaga
gi|26 : TTCTTAACCTAATCAATACAATCATCAACACCATCA---CAATCA-CTATA--A--CCAA-----CAT--C-AGCATTATCATCAGCAGCAGCA--ACAGCAGAAGatc
gi|27 : tCATTTT---T-TG-------CT-T-TT---ATTAT-----CATTA---TCAGCATCATC-ATCATCA--TAATAATCACCATCATCA-TAA-TC
gi|27 : TTATCATTATCAGCATCATCATCATCATAATAATCACCATCATCATAATCACCacc
gi|28 : cattttttgcttttaATAC-ATCATAATCATTATGATCTTGATC---GT----G-----------ATAATCACAATCATCATCAGCAGCAACAGCAGCA
gi|29 : TTATCATTATCATCATGCTCAGCATCATCACTATCATGAAAATCATTTta
gi|3 : ttaTTCTGAGGA--TCGTCTTTCTAGGTTGATCTCTGGGACATGGTTGATCTCTGG---GACAT--GGTTGATTTCTGGGACAT-G--------------GTTGACTTCTG-GGATACA--------GCCGACTTCT-----------TT-G--TTGACATCTG------AGTCAACTTCTGGGACATGGTTGACTTCTGAATTAACTACTGGAATATATC--TGA---------------TGCCGTATAAAATATACAGTTAAGTTTTTAAA---ACTGTTAAGACCAATTAAAACTACATA--------TCAGGAAAATACCAGAATACTGTTTA-AGTT-TTGTTTTGCTACTATGTTAGTGTCGGTACAATAACGCCAATAAGTATGTTTGTAATCTTATGTAGAGA--CTAGAGCAATTTAATTACAAAGATAA--A-TATTATGAAGAATGG--A--GATATTattaatattaatatc
gi|31 : catactccttacctggatctatacctggaactataggtatgtggccaatcagtggatcccaaatgtaaagctttcaaatgaatggacttctgt--ATCGT---------CGTCGTGGT---------CGTCCGGTTGTCG---TTGTCGTCGTCGTCA----TTATCAT---CATCATCATCAGC
gi|31 : GTTGTCGTTGTCGTCGTCGTCATTATCATCATCATCATCA
gi|32 : atcgtcgtcgtggtcgtccgAG--CAGCAGCAGCAGCATCATTAT--gc
gi|32 : AGCA--GCAGCAGCAGCATCAT--TATCCTCGAT--GT--------T---ATTATCcctcgatgttattatcataaaattataattatcact
gi|33 : GTCGTCGTCGTCGTCGTTGTTGTCATCATCATCAGCAACA--GCAGCAGCAGCAataaaattataattatcact
gi|4 : CAACAGAAGCAGTAGATATCTTCATCCGTCCAGTATT--ATATCCTTCTCGGGTCCCATTGACACCATCCTAG-CATGACTTTATATCACTTTATACTTACCATCTGTATCCATAT-ACCAACATCCTCATCACAGT------GNNNNNNNNNNNNNNNNNNNNNNNNNACAACAACAACAGCAGCAGAAGATATCTT-AATCAGTCCAGTATTATCTCCATCTGCAGTCCCATTTACACCATCTGAACATAACCGTATATCACTTTATACTTACCATCTGTATCCAT--ATACTAGCATTCTTATGACTGTGATCATCATCATCATCAACAATAACAGAAGTATATACCTTCATCCGTCCAGTATTAg
gi|5 : aCACCA-TTACCATCATTT-TAATGACCATACTGATCATTCTCATCTTTACTGTC--AGA----TGCTCT-A-CATAATCATCAGC--AG-CAGCAGTAACAGCAGCATTATNNNNNNNNNNNNNN-NNNNNNN-N-NNN----NN-N-N-NNNNNNNNNNNNNN-N-NNNNNNN-NN--NNNNN---------N-TTGTCAGGAGCAGCAGCAGC-----AGCA---TGATCAACATCTTGA----TCAACAT---CATTATCATCATTATCATTATCAC--TGTTATGACCA-TAATGATCATTTTCATCTTTACATC--TTGTC-----CCTGG--TTGAAATCTC-AATATC--ATCATCATTATCATCATCAT-----------CATCAGCAGCAGCAGTGTAACCACCATCTTAATCtatccatctcgagtcccattgacacca
gi|5 : cattatcattatTCAG--GAGCAGCAGCAGCAGCATGATCAACATCTTGATCAACAT-CATTAT------CATC---ATTATCATTATCACTG-TTATGACCATAA--TGAT--CATTTTCATC-TTTACATCTTGTCCCTGGTTGAAAT-CTCAATATCATCATCATTATCATCATCATCATCAGCAGCAGCAGTGTAACCACCATCTTAATCATTATCattatcatca
gi|6 : cattatcattatcaccattaccatcattttaatgaccatactgatcattctcatctttactgtcagatgctctacataatcatcagcagcagcagtaacagcagcattatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnttgAACAGCTGCTTTCTATTATCAACATCATCACTAC--TTTATCTTTCTAGTCATCAGCATGATCTATTTTTATCAACAT---CATCATTACC---ACTATATCATCATC-ATC-ATCATTATCGTCCTCAT---AAGCAGCTGATTATGTGTAT--TTGTATTAGCTGCTATTAATTT--TGTT---C--ATAAACATCATCATCT------TCA---TTATGA-CTATATCA--TCAT-----CAT--T-GTCATCATCATCATCCTCCTCA--TTAGCAGCTG-ATTATG-TGTATTT--------------GT---ATTAGCTGC---TATT-----AATT-TTGT------------------TC-A----TA--A-ACATCAT---C----------ATCA-TC---ATTATGACTATATCA---TCATCATTGTC-ATCATCA--TCCTCCTCATatca
gi|7 : atctcaaccatcagcCAAAGTTATTGGTATTGTTAT-GTCATCATAATTATCATGATTGACATCGTAATt
gi|7 : attctTATTGTTAT-GTCATCAT---AATTATC---ATGATTGACATC----GTAATGTCGT---A-ATCAT----TA----TC-A-TCGCTGGTTACATT--------ATCA-TA--TTCAT---------CATCACTG------------CT-----AACA---CCATCGTCATCGTAA----T-ATCATAGGCATCATCAgtcgtaatcattatcatcgctggttacattatcatattcatcatcactgctaacaccatcgtcatcgtaatatcataggcatcatcaaaattacagtgtacatcaacttagacaacagtgtcagatttattattaattgcattatcataagtaatgacatcgttatcatcgacatcatcaccaatatattcattatcgtcataataattagcatcgtcaataacatcg
gi|7 : attctcaaagttattggATTATCATCGCTGGT--T--ACAT------TAT---CATATTCA---TC--A-T----CACTGCTAACACCATCGTCATCGTAAT-------ATCATAGGCATCATC-AAAATTACAGTGTACATCAA-C-TTAGACAAC-AGT-GTCAGAT---TTAT-TATTAATTG-CATTATCATAAGTAATGACATCGTTAT---------CATC-----GACA---TCATCACCAATATAT----TCATTAT---CGTCATAATAATTAGCA--aaattacagtgtacatcaacttagacaacagtgtcagatttattattaattgcattatcataagtaatgacatcgttatcatcgacatcatcaccaatatattcattatcgtcataataattagcatcgtcaataacatcg
gi|8 : attctcaaagttattggtattgttatgtcatcataattatcatgattgacatcgtaatgtcgtaatcACAATTTAATTATGAAGATAGATACTGT--GAAAGAAACGTAAATGGCATTAT-TAA-AGAAAGCA-----TTTT-ATTGACACTCTTGACGAGA--AAAA----ATTAACTTACCTATTATCCAAGTCTTGGCTACCCCAACTTTAT------------CAATATTTGAATGACTTCTAACCCAGG------ATCCGATTCTTTACTATCACACTCCATCATACATCTTTATCTACTGGCTTATTTCTATCTTCAGTTTCATCGATGTCATCCATAACATTACTTGtcgtcaataacatcg
gi|9 : CTTCTGT-TTCATCATCA--A-CAC---------CACCATTAT---------CATC-----AACAATATCATCACCAACATCA----TTAACAA---CACCATTGTCAACAGCA--A
gi|9 : gTTA-TC--ATCAACAATATCATCACCAACATCA---TTAACA-ACACC--A--TTGT-----CAA--C-AGCAACAACAANNNNNNNNNNN--NNNNNNNNNNNNNNNNN-NNNNNNN-NN--NNNNN--NNNN---NNNNNNN-N---NNNN--NNNNNNN-NNNNNNNNNNNNNNGC-----AAC-AACAATTTCA-GCATCAT---------------T-A-TC---ATCAA-----CACCA---CCACCATCATC-ATCATAATTTTGTCAcaacaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngcaacaacaatttcagcatcattatcatcaacaccaccaccatcatcatcataattttgtcaagtcttactaaatac
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|17 ): CACTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCCACCGTTATCATCATACCCCATCATCAGTGCTAT
Unaligned ( gi|30 ): TTGTCATTATTATCATTATTGTTATCAGTAATATCCTCTTTTTTTCCATCTCGCCCTCCTCCTCCT
Alignments
lowQualScore : 111111 22222 3333 11 2222222 22222222 11111111111111111 222222 11 2 22222222 6666666666666 1 1 11111 1 11 11 666666666666 555555555 222 1111111111 22222222222 1111111 222222 111 11 222222222 222222222222 22222222222222222 111111 222222222 11111111111111 1111 1111 11 333 2222 1 11 111 444444444 33333333333 1 11 1 333 1111 111 1 222 1 1111 222222 111 1 1 111 11111 1 11111 1 11 1 111111 11111 1111111 11 33333333333333333 111 111 22222222222222222222 4444444444444444444444 11111 22222222 22 11111 4444444 1111 11 111 222 1 2222 1 1 11 55555555555 11 222222 111 11 11 1 222222 222 11111 1 11 111 1 88888888888888888888 22222 11 111 222 1 88888888888888888888888888888888 1 1 222 1 11 77777777777777777777777
lowQualScore : 1 3 222222 1 33333 1 1 1 5555 11 1 8 5555555 4 1 8 0 99999999 1 77777777777777777 0 333333 1 0 0 11 6 6 0 00000000 7 6 6 9999999999999 2 6 0 0 0 6 1 3 0 6 0 44444 6 6 6 6 3 88 0 7 11 999999 888888888888 1 6 777777777 0 333 1 3333333333 77777777777 9999999 333333 444 11 333333333 1 3 2 555555555555 1 4 2 8 2 77777777777777777 1 2 0 222222 0 6 77 000000000 2 88888888888888 0000 888 3 1 1 0000 2 888 1 11 000 6 1111 0 0 33 2 3 3 444 2 444444444 0 3 0 2 88888888888 1 0 33 0 1 0 1 0 7 111 1 2222 000 0 0 2 1 5 111 1 1 1 5 22 1 0 1 0 0 6 0000 1 888888 6 666 0 4 1 1 0 22 777 88888 6 2 1 44444 6 3 0 44 2 3 1 7 333333 5 1 7 1 2 0 5 66 66 22222 66 5 0 0 2 6 444 0 4444444 44 55555555555555555 5 555 111 5 33333333333333333333 4444444444444444444444 777 11111 4 8888 1 5 77777777 44 66666 3 1 1 0 0 6 3333333 8888 44 1 6 1 66 1 1 0 44 11 2 1 999 000 0 0 1 0000 2 1 7777 0 0 0 99 22222222222 1 1 33 1 2 333333 3 444 2 88 88 5 1 999999 111 1 1 1 77777 1 5 1 77 222 3 1 66666666666666666666 1 66666 1 88 999 1 1 2 22 111 1 1 22 1 5 1 1 66666666666666666666666666666666 1 5 5 1 22 1 1 1 2 22 1 1 1 111 5 88 77777777777777777777777 1 1 1 1
lowQualScore : . . ...... . ..... . . . .... .. . . ....... . . . . ........ . ................. . ...... . . . .. . . . ........ . . . ............. . . . . . . . . . . . ..... . . . . . .. . . .. ...... ............ . . ......... . ... . .......... ........... ....... ...... ... .. ......... . . . ............ . . . . . ................. . . . ...... . . .. ......... . .............. .... ... . . . .... . ... . .. ... . .... . . .. . . . ... . ......... . . . . ........... . . .. . . . . . . ... . .... ... . . . . . ... . . . . .. . . . . . . .... . ...... . ... . . . . . .. ... ..... . . . ..... . . . .. . . . . ...... . . . . . . . .. .. ..... .. . . . . . ... . ....... .. ................. . ... ... . .................... ...................... ... ..... . .... . . ........ .. ..... . . . . . . ....... .... .. . . . .. . . . .. .. . . ... ... . . . .... . . .... . . . .. ........... . . .. . . ...... . ... . .. .. . . ...... ... . . . ..... . . . .. ... . . .................... . ..... . .. ... . . . .. ... . . .. . . . . ................................ . . . . .. . . . . .. . . . ... . .. ....................... . . . .
lowQualScore : 0 2 444444 4 22222 0 4 4 8888 00 0 0 2222222 2 0 0 8 00000000 0 88888888888888888 8 000000 4 8 8 00 4 7 7 33333333 3 7 7 7777777777777 0 7 7 7 7 7 0 2 0 5 8 22222 7 7 7 7 3 33 7 3 00 333333 333333333333 0 7 000000000 7 333 0 7777777777 66666666666 5555555 000000 000 44 222222222 0 5 5 000000000000 7 8 8 0 2 44444444444444444 0 8 2 000000 2 7 99 000000000 2 44444444444444 6666 888 1 2 0 6666 2 888 0 00 333 7 2222 0 2 22 5 2 5 222 5 555555555 2 2 8 5 00000000000 2 0 88 0 0 7 0 7 3 000 0 1111 000 7 4 7 7 5 000 0 0 0 5 00 0 7 0 7 7 7 8888 0 000000 5 222 0 2 2 2 0 55 555 55555 7 0 0 33333 7 3 7 33 0 7 0 3 000000 0 0 5 6 2 4 0 99 99 55555 99 0 2 5 4 8 888 2 4444444 11 88888888888888888 7 777 000 0 77777777777777777777 1111111111111111111111 888 11111 4 8888 0 6 00000000 33 77777 7 0 0 7 7 7 3333333 7777 77 0 7 4 00 4 4 8 66 00 2 0 555 555 2 0 0 5555 5 0 2222 0 0 2 88 55555555555 2 0 88 0 0 888888 2 000 5 33 33 0 0 000000 000 0 0 0 00000 0 0 0 55 333 3 0 00000000000000000000 0 00000 0 55 555 0 0 5 00 000 0 0 00 0 0 0 0 00000000000000000000000000000000 0 0 0 0 00 0 0 0 5 00 0 0 0 000 0 00 00000000000000000000000 0 0 0 0
consensus : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTCTGGNACATGGTTGACTTCTG--GA--TCGGCTT-CTAGGTTNACTTCTGGGACATGGTTGACTTCTGGA--GACAT--GGTTGATTTCTGGNACAT-G--TT-NACTTCCGGGTNGACTTCTG-GGACATA--------GCNGACTTCTAGGTAGATGCNTTAG--TTGATTTCTG------GGTCGACTTCTGGGAAATGGTTGACTTCCGAATTGACTTCTGGAATATATT--TGACTTT-AATTCTTTGATGCCGTATATAATATACAGTTAAGTTTTTAAACACACTGTTAAGACCATTTAAAACTACATA--------TCAG-AAAATACCAGTATTCTGTTTAGAGTTGTTGTTTCGCTACTATGTTAATGTCGGTACAATAACGTCGATTGGTATGTTTACAATCTCATATAGAGAGGCTAAAACAATTTAATTANAAAGATAAATA-TATCAGGAAGAATAGTCA--GACATTGTGTAACAGAAAACACAACATTTTGATT-ACACTC--GACGAAATCAAAATGAGATTAACTTACCTATTATCCAAATCTCGATTATCCCATCTTCAC------------CAACATGTAGATAATNTCTAGTCCAGN------A-CCGATTCTTCATCATCA---TCCATTACACATCTTCATCACCTGATTTATCTCNATCTTCAGTGTCATCGGTGTCATCCATAACATTACCTGATACTTCCACACACCAACTACCATCACTT-T--T--CCAT------CAT---CATCTTTACGATC--A-A----CACTNTTATCATCATCATCATC--AATCACC--TATCATCGGCATCATCTGCAGTTTCATTG-ACACCAT-C-TTA----AC-A-T-GCCNGATACCTTCT-T-TTCATCG-CA--ATCAT---------CATCGTTA-------TCG-C--CAA----C---ATCATCGTCATCGTNA----TCATCAT---CATCATCATCAGCAGCA--AACAC--TCTTGTGTCCAGTAAT----ACCT-CCATCTCCAGNTCCATTGACACCATCCTAGCATTAAA----C-AATACCTTATTATCNTTACCATCATCAT-----------CATCAGCAGCAGCAGTA-TA--TA-TATCTTNATCCGTCCAGTATTATCTCCATCTCGAGTTCCATTGACGCCATTCTTACAGTACTTTGATACAACGTTATCGT----TATCATCAT---CATCATCATCACCATCATCATCGTCATCGTAATCATCTCATCCGTCCAGTGTTATTTCCATTTCAAGTTTCATTGGTGCCATTCTAACATTACCTTTTCCCACTTTATCCCTACCATCATTTTTATCGCCAACATGATCTTCANTGCAATCATCNTCACCANCAGCATACATCTTCATCCGTCCANNGTTATCTCCATCTCNAGTTTTATCGNCGCCGTTCTAACATC-GCCTTNTACCACC----TTATCGTTAC--TC-ATCGTTCTTGTCACCAACATCATC-ACTATAATCATCAT---CATCAGCAGC---A-TATATCTTCATCCATCCATNATTATC-TCC-CATCTCAAGTA-CCGTTGACGN-CATCCTTACATTACCCGATACCANCTTATTCTTA-CC--ATCAACANCATCATCACCAACATCATCATCA-CTACA--A--TCAT-----CAT--C-ATCATCATCAACAGCAGCAGCAGTAGCAGCAGCAT-------CATG-TATCTTC-AT--GCGTCTAGT---ATTATCT-C---CATC--TCCAGTT-TTATCGAC-----ATC-ATTCTA-ACATTAC---C-TG-------AT---A-TC---ATCAT-----CATCATCATCATCGTC-ATCATCATC---GTCATCANCAGCAGCA----TAT-TCTTCATC-CATTA--AGTATTATCTCCATNTCCAGTCCNATCGACACCGTCATAACATTACCTTAT-------ATCACTT-NA-ACTTACCATCGNCATCNTTACCACCAACGTCATCGCCACCGTCGTCGTCGTCGTCATCGCCAGCGNCA--GCAGCAGCANCAT--ACATCTTCACCGATCCACCATTATC-TCCNTNTC-CAGCNTCATTGCCACCATC-TTAAC-ATTACCT-ATACCA-GCTTATACT-TATCAACANCAT--CANCACCGC--TACTCATCACCATCATCAG--CAGCAGCAGCANCAGCATTAT--ATATCTTCATC--CATCCANTATAACCTCCATCTCTANTNCCATTGNCACCGATTNTGACCATNACCTGATACCATCTTAATC-TTANCATCTTGTCC---GT----AT-C-CAA---CATCATCATNATCATCATCAGCAGCAGCAGCAGCAGCGTAACCACCATCTTNACCATTATCCAGTATTTTCTCCATCTCCAGTCCAATTGACCCAATTCTAAATTTACCTGATACCACCCAATACTTACAACCATCATCCTTATCACCAACATCATCATTAATGTTATTACCATCAACAGCAGCAGCATATATCTTCACCCGTCCAGTATTTTNTNTCCNTCTCCGGTCCNNTTGACACCATCCTAGACATNACCTNATATCACCTTATACTTACCATCNNCATCCNTATCACCNACATCCTCATCACNGTT-----GNNNNNNNNNNNNNNNNNNNNNNNNNACAACAACAACAGCAGCAGAANATATCTTCAACCAGTCCAGTATNATCTCNNTCTNCAGTCCCANTNACGCCATCCGAACATAACCNNACACNANCTTATACTTACCANCTGTATCCATCAACACTGGCATTCTTATGACTGTGATCATCATCATCATCAGCAGTAGCAGNAGCATATACNTTCATNCGTCNAGTATTA
Reference ( family-1427 ) : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTCTGGNACATGGTTGACTTCTG--GA--TCGGCTT-CTAGGTTNACTTCTGGGACATGGTTGACTTCTGGA--GACAT--GGTTGATTTCTGGNACAT-G--TT-NACTTCCGGGTNGACTTCTG-GGACATA--------GCNGACTTCTAGGTAGATGCNTTAG--TTGATTTCTG------GGTCGACTTCTGGGAAATGGTTGACTTCCGAATTGACTTCTGGAATATATT--TGACTTT-AATTCTTTGATGCCGTATATAATATACAGTTAAGTTTTTAAACACACTGTTAAGACCATTTAAAACTACATA--------TCAG-AAAATACCAGTATTCTGTTTAGAGTTGTTGTTTCGCTACTATGTTAATGTCGGTACAATAACGTCGATTGGTATGTTTACAATCTCATATAGAGAGGCTAAAACAATTTAATTANAAAGATAAATA-TATCAGGAAGAATAGTCA--GACATTGTGTAACAGAAAACACAACATTTTGATT-ACACTC--GACGAAATCAAAATGAGATTAACTTACCTATTATCCAAATCTCGATTATCCCATCTTCAC------------CAACATGTAGATAATNTCTAGTCCAGN------A-CCGATTCTTCATCATCA---TCCATTACACATCTTCATCACCTGATTTATCTCNATCTTCAGTGTCATCGGTGTCATCCATAACATTACCTGATACTTCCACACACCAACTACCATCACTT-T--T--CCAT------CAT---CATCTTTACGATC--A-A----CACTNTTATCATCATCATCATC--AATCACC--TATCATCGGCATCATCTGCAGTTTCATTG-ACACCAT-C-TTA----AC-A-T-GCCNGATACCTTCT-T-TTCATCG-CA--ATCAT---------CATCGTTA-------TCG-C--CAA----C---ATCATCGTCATCGTNA----TCATCAT---CATCATCATCAGCAGCA--AACAC--TCTTGTGTCCAGTAAT----ACCT-CCATCTCCAGNTCCATTGACACCATCCTAGCATTAAA----C-AATACCTTATTATCCTTACCATCATCAT-----------CATCAGCAGCAGCAGTA-TA--TA-TATCTTNATCCGTCCAGTATTATCCCCATCTCNAGTTCCATTGACGCCATTCTTACAGTAC-T-GATACAACGTTATCGT----TATCATCAT---CATCATCATCACCATCATCATCGTCATCGTAATCATCTCATCCGTCCAGTGTTATTTCCATTTCAAGTTTCATTGGTGCCATTCTAACATTACCTTTTCCCACTTTATCCCTACCATCATTTTTATCGCCAACATGATCTTCANTGCAATCATCNTCACCANCAGCATACATCTTCATCCGTCCANNGTTATCTCCATCTCNAGTTTTATCGNCGCCGTTCTAACATC-GCCTTNTACCACC----TTATCGTTAC--TC-ATCGTTCTTGTCACCAACATCATC-ACTATAATCATCAT---CATCAGCAGC---A-TATATCTTCATCCATCCATNATTATC-TCC-CATCTCAAGTA-CCGTTGACGN-CATCCTTACATTACCCGATACCANCTTATTCTTA-CC--ATCAACANCATCATCANCAACATCATCATCA-CTACA--A--TCAT-----CAT--C-ATCATCATCAACAGCAGCAGCAGTAGCAGCAGCAT-------CATG-TATCTTC-AT--GCGTCTAGT---ATTATCT-C---CATC--TCCAGTT-TTATCGGC-----ATC-ATTCTA-ACATTAC---C-TG-------AT---A-TC---ATCAT-----CATCATCATCATCGTC-ATCATCATC---GTCATCANCAGCAGCA----TAT-TCTTCATC-CATTA--AGTATTATCTCCATNTCCAGTCCNATCGACACCGTCATAACATTACCTTAT-------ATCACTT-NA-ACTTACCATCGNCATCNTTACCACCAACGTCATCGCCACCGTCGTCGTCGTCGTCATCGCCAGCGNCA--GCAGCAGCANCAT--ACATCTTCACCGATCCACCATTATC-TCCNTNTC-CAGCNTCATTGCCACCATC-TTAAC-ATTACCT-ATACCA-GCTTATACT-TATCAACANCAT--CANCACCGC--TACTCATCACCATCATCAG--CAGCAGCAGCAGCAGCATTAT--ATATCTTCATC--CATCCANTATAACCTCCATCTCTANTNCCATTGNCACCGATTNTGACCATNACCTGATACCATCTTAATC-TTANCATCTTGTCC---GT----AT-C-CAA---CATCATCATNATCATCATCAGCAGCAGCAGCAGCAGCGTAACCACCATCTTNACCATTATCCAGTATTTTCTCCATCTCCAGTCCAATTGACCCAATTCTAAATTTACCTGATACCACCCAATACTTACAACCATCATCCTTATCACCAACATCATCATTAATGTTATTACCATCAACAGCAGCAGCATATATCTTCACCCGTCCAGTATTTTNTNTCCNTCTCCGGTCCNNTTGACACCATCCTAGACATNACCTNATATCACCTTATACTTACCATCNNCATCCNTATCACCNACATCCTCATCACNGTT-----GNNNNNNNNNNNNNNNNNNNNNNNNNACAACAACAACAGCAGCAGAANATATCTTCAACCAGTCCAGTATNATCTCNNTCTNCAGTCCCANTNACGCCATCCGAACATAACCNNACACNANCTTATACTTACCANCTGTATCCATCAACACTGGCATTCTTATGACTGTGATCATCATCATCATCAGCAGTAGCAGNAGCATATACNTTCATNCGTCNAGTATTA
gi|1 : TTCTGAGGAC------------CGCATCTCCACGTACATGCGTAAAAATTG--TTCTGAGATATGGTTGACCTTT----AA--GTCGACTTCTGTGTTTACTTCTGGAACATGGT--TGATTT
gi|1 : tgtTTCTGAGATATGGTTGACCTTTA--AG--TCGACTT-CTGTGTTTACTTCTGGAACATGGTTGATTTCTGAA---ACAT--GGTTGACTTCTGGAACAT-G--TT-TTTTTCTGGATAGACTTCTG-G-ACATA--------GCAGACTTCTAGATAGATGCCTTAG--TTGATTTCTT------GGTCGATTTCAGGGAAGTGGTTGACTTTCAAATTGACTTCTGGAATATATT--TGACTTTCAATTCTTTGATACCATATATAATATACAAT---GTTT--AAACACACTGTTAAGACCATTTAAAACTACATAATATTTTATCAGTAAAATACCTGTATTCTTTTTAAAGTTGTTGTTTCACTACTATGTTAATGTCGGTACAATTATGTTGACTGGTATGCTTACAATCTCATATAGAGAGGCTAAAACAATTTAATTAGAAAGATAAATA-TATCAGGAAGAATAGTCA--GACATTGTGTAACAGAAAACACAACATTTTGATT-ACATTC--GACAAAATCCTATTAAGATTAACTTA----TTATCCAAATCTCGATTATCCCATCTTCACCAACAGCTTCACCAACATGTAGATAATGTCCAGTCCAGC------AACCAATTCTTCATCACCA---TCCATTACACATCTTCATCACCTGATTTATCTCAATCTTCAGTGTCATCGGTGTCATCCATAACATTACCTGATACTTCCACACACTAACTACCATCACTT-T--T--CCAT------CAT---CATCCTTATGATC--A-A----CACTTTTATCATCATCATCATC--AATCACC--TATCATCAGTATCATCTGCAGTTTCATTG-ACACCATCC-TTA----ACAA-T-GCCCGATACCTTCT-T-TTCATTG-CA--ATCAT---------CATCCTTA-------TCA-C--CAA----C---ATCATCATCACTGTAA----TCATCAT---CATCATCATCAGCAGCA--AACA---TCTTGTGTCCAGTAAT----ACCT-CCATCTCCAGCTCCATTGACACCATCCTAGCATTAAA----CAAATACCTTATTATCCTTACAATCATCAT-----------CATCAGTAGCAGCAGTA-TA--TA-TATCTTGATCCGTCCAGTATTATCCCCATCTCCAGTTCCATTGACACC-TTCTTACAGTACTT-GATACAACGTTATCCT----TACCATCAT---CATTATGATCACCAACATCATCATCACTGTAATCATCTCATCCGTCCAGTGTTATTTCCATTTCAAGTTTCATTGGTGCCATTCTAACATTACC-TTTCCCACTTTATCCCTACCATCATTTTTATCGCCAACATGA---TCACTGCAATCATCATCACCATCAGTATACATCTTCATCCGTCCATGGTTATCTCCAACTCAAGTATTATTGACACCATTCTAACATT-TCCCGGTACCACC----TTATTCTTAC--TC-ATCATTCTTATCACCAACATCTTC-ACTGCAATCATCAT---CATCAGCAGC---A-TGTATCTTCATGCGTCTAGTATTATC-T-C-CATCTCCAATT-CTATTGACAA-CAACCTAACATTACCAGATACCAGCTTATTCTTA-CC--ATCAACAACTTTATCGCCAACATCATCATCA-CTGCA--A--TCAT-----CAT--C-ATCATTATTAGCAGCAGCAGCAGTAGCAGAAGCAG-------CATG-TATCTTT-AT--GTGTCTAGT---ATTATCT-C---CATC--TCCAGTT-TTATTGAC-----AGC-ATCCTA-ACATTAC---C-TG-------AT---A-CC---ACCTT-----CATCACCATCACTGTT-ATCACCATC---ATCATCATCAGCAGCA----TATCTCTTCACC-TATTA--AGTACTATCTTCATCTCCAGTTCACTTGACACCAGCCTAACATTACCTGAT-------ACCACCTAAA-ACTTACCATCATCATCTTTACCACCAACACCATCACCACTGTTATCTTCATCATCATCACCAGCTTCA--GCAGCAGCAGCAT--ATATCTTCACCTATCCAGTATTATC-TCCTTCTC-CAGTCTCATTGACACCATC-CTAAC-ATTACCTGATACCA-GCTTATACT-TACCAACATCAT--CAACACTGTGATACTCATCACCATCATCAG--CAGCAGCAGCAGCAGCATTAT--ATATCTTCACC--TATCCAGTATAACCTCCATCTCTAGTCCCATTGAC-CCAATTCTAA-CATTACCTAATACCACCTTAAAC-TTACCATCTTGTCC---AT----ATAC-CAA---CATCATTATCATCATCATCAGGAGCAGCAGCAGCAGCATA-----TATCTTTACC--TATCCAGTATTTTCTCCATCTCCAGTCCAATTGACCCAATTCTAAATTTACCTGATACCACCCAATACTTACAACCATCATCCTTATCACCAACATCATCATTAATGTTATTATCATCAACAGCAGCAGCATATATCTTCACTTATCCAGTATTTTTTCTCCATCTCCAGTCCATTTGACACCATTCT-GACATTACCTGATATCACCTTATACTTACCATCATCATCCTTATCATCTACATCCTCATCACTGTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTATATCTTCAACTA-TCCAGTATAATCTCATTCTCCAGTCTCAATGATGCCATCCTAACATAACCTGACACAAGCTTATACTTACCAAC---AT-CATCAACACTG-----------------------ATCATCATCAGCAGTAGCAGCAGCATATATATTCATGTATCGAGTATTActgaaacatggttgacttctggaacatgtttttttctggatagacttctggacatagcagacttctagatagatgccttagttgatttcttggtcgatttcagggaagtggttgactttcaaattgacttctggaatatatttgactttcaattctttgataccatatataatatacaatgtttaaacacactgttaagaccatttaaaactacataatattttatcagtaaaatacctgtattctttttaaagttgttgtttcactactatgttaatgtcggtacaattatgttgactggtatgcttacaatctcatatagagaggctaaaacaatttaattagaaagataaatatatcaggaagaatagtcagacattgtgtaacagaaaacacaacattttgattacattcgacaaaatcctattaagattaacttattatccaaatctcgattatcccatcttcaccaacagcttcaccaacatgtagataatgtccagtccagcaaccaattcttcatcaccatccattacacatcttcatcacctgatttatctcaatcttcagtgtcatcggtgtcatccataacattacctgatacttccacacactaactaccatcacttttccatcatcatccttatgatcaacacttttatcatcatcatcatcaatcacctatcatcagtatcatctgcagtttcattgacaccatccttaacaatgcccgataccttcttttcattgcaatcatcatccttatcaccaacatcatcatcactgtaatcatcatcatcatcatcagcagcaaacatcttgtgtccagtaatacctccatctccagctccattgacaccatcctagcattaaacaaataccttattatccttacaatcatcatcatcagtagcagcagtatatatatcttgatccgtccagtattatccccatctccagttccattgacaccttcttacagtacttgatacaacgttatccttaccatcatcattatgatcaccaacatcatcatcactgtaatcatctcatccgtccagtgttatttccatttcaagtttcattggtgccattctaacattacctttcccactttatccctaccatcatttttatcgccaacatgatcactgcaatcatcatcaccatcagtatacatcttcatccgtccatggttatctccaactcaagtattattgacaccattctaacatttcccggtaccaccttattcttactcatcattcttatcaccaacatcttcactgcaatcatcatcatcagcagcatgtatcttcatgcgtctagtattatctccatctccaattctattgacaacaacctaacattaccagataccagcttattcttaccatcaacaactttatcgccaacatcatcatcactgcaatcatcatcatcattattagcagcagcagcagtagcagaagcagcatgtatctttatgtgtctagtattatctccatctccagttttattgacagcatcctaacattacctgataccaccttcatcaccatcactgttatcaccatcatcatcatcagcagcatatctcttcacctattaagtactatcttcatctccagttcacttgacaccagcctaacattacctgataccacctaaaacttaccatcatcatctttaccaccaacaccatcaccactgttatcttcatcatcatcaccagcttcagcagcagcagcatatatcttcacctatccagtattatctccttctccagtctcattgacaccatcctaacattacctgataccagcttatacttaccaacatcatcaacactgtgatactcatcaccatcatcagcagcagcagcagcagcattatatatcttcacctatccagtataacctccatctctagtcccattgacccaattctaacattacctaataccaccttaaacttaccatcttgtccatataccaacatcattatcatcatcatcaggagcagcagcagcagcatatatctttacctatccagtattttctccatctccagtccaattgacccaattctaaatttacctgataccacccaatacttacaaccatcatccttatcaccaacatcatcattaatgttattatcatcaacagcagcagcatatatcttcacttatccagtattttttctccatctccagtccatttgacaccattctgacattacctgatatcaccttatacttaccatcatcatccttatcatctacatcctcatcactgttnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntatatcttcaactatccagtataatctcattctccagtctcaatgatgccatcctaacataacctgacacaagcttatacttaccaacatcatcaacactgatcatcatcagcagtagcagcagcatatatattcatgtatcgagtatta
gi|10 : tgtttctgaggaccgcatctccacgtacatgcgtaaaaattgATCGACATCGT-ATAACAATACTTTATCGACATAGTCATTG-CA-AACTATTATCGACATCGTCACTGCCAATGCCATTGCCACCGTTTTCGACATCGTAATTGTCATCGTCATTGCTG--ACGTTATTGACATTTTCATTGA--CACCATTATC-TCCAT-------CGTTATTGCCACCGTTATTGAT-ATTGTCA-ATATCA---TTG---T-TATCGACAGCGT--CATTGCCAT--T-TTCAT
gi|11 : ttTCATCATCATCGTCGTTGTCGTCGTCGCCGCC-GNNNNN--NNNNNNNNNNNNN--NNNNNNNNNNNNNNNCATTATTGTCATATTTATCACAGCATCATAATCATCATT-TTAAT-ATTAACT-ATACCGTGATCATA----ATCAATATCATACCATTACCAC---AGTCATCATCATTATCGGTATAGCAGCAACATCAATATTAT--ATAGCAGCATC--t
gi|12 : aCATTGTTGATTTCTT--GA--TTAACTA-CTAGGCTGACATCTTAGATATGGTTGACTTCTGGGCTGGCATCTGATATATTGTTGGTTTAT-GGTTT-TACTCCCGGGTTGACTACTA-GGATATGACTTAGAGGCTGACTTCT-GGTA----CATTA---TTGATTTCTG------AAACAACTTCTGGGAAATGGTTGACTTCTGGGCTGATATCTGG--TACATTGCTGATTTagaagacac
gi|13 : AACATCATCATCATCTACA--AATTCATGTTACCTT--CTAACATCATCTACATCATCAGCATTATATTCAACAT-------CATGATATCTTC-CA--ACATCTA-T---ATCATCA-CTATCATC--TTCAATT-TCAT-GAT-----ATC--TTCTA-ATATCAA---CATT-------ATC--A-TC---TTCAA-----CATCATGATAATCTTCCAACATCATCTAAATCATCACCATCA-----------TCTTCA
gi|14 : ccttgCAACAACATCAACACCACTATCAAC-----CATCAGCAATAGCACCA--GCAGCAGCACCAC---CACCGCCACCA--CCACCGTTACC-TCCAAGAC-CACCCTCA---CCACAATC-TCAACCACCACC----ACCA-AC--A-ACAATAACAACAACAT--CAACACCAC--TAC-CA--ACCATCATCAG--CAGCAGCAGTACCAGCAaca
gi|15 : TCATCA-TTACA--A--CC-------CATAGC-TTCATCATCAACAGCAGCATCAATAGCATTCTCAT-------CAT--CATCAAC-ATAAGTGGC-AGTGACATTATTT-CA--CACC--ATCAG-------CAGC-----ATCAATTC----CATTGT---A-TA-------A----A-TC---ACCAC-----CACCATCATCA--GTC-ATCATCATT---GTCATCAgc
gi|16 : tTCATCATC---ATTATCAGCAGCAGCA--------TCTTTAT--CATTA--CTTTTTATC
gi|16 : TCAT---------CATCATTA-------TCA-G--CAG----C---AGCATCTTTATCATTACTTTTTATCAT---TATCATTATTAattatcattattatttttgttatcattatcattaccatgatgatggtgatggtgatggtgatgatcatgatgatacagtacgattattataa
gi|16 : CATCATCAT-----------TATCAGCAGCAGCAtttttgttatcattatcattaccatgatgatggtgatggtgatggtgatgatcatgatgatacagtacgattattataa
gi|16 : tATCGTACTGTATCATCATGATCATCACCATCACCATCACCATCATCATGGTAATGATtctttatcattactttttatcattatcattattatttttgttatcattatcattaccatgatgatggtgatggtgatggtgatgatcatgatgatacagtacgattattataa
gi|18 : tcatcatcattatcagcagcagcatctttatcattactttttatcattatcattattatttttgttatcattGTTATCATCAGT-----ATA-ATC--A-ATATTA------TA-------AT---T-TC-----TAT-----CATCATAACCATGATC-ATCATTATT---GTCATCATCAGCA-----------TCCTCAT--CATTAATAGTATTATtattataa
gi|19 : ggctgctaaatttaatatcgttATCGCTATCACTAGCTTTTTCGTCAACGGT--AGCATC-AT-TTACATCA------TTATTGTTA---TC-GTCGTTGTCGGCGTCATCATCATC-ATCAAAATCATCAT---CATCAGCAGC---A-tatt
gi|2 : catcaccCATGTTTG-CTTCTG--GAACTTGGTT-----GGTTAACTTCTGGAACATGGTTGAATTCTGGA---ACAT--GGTTGACTTCTGAAACATAG--TT-GACTTCTGGATAGACTTATT-GGACATA--------GCAGACTTCAAGGTAGATGCCTAAG--TTGATTTATA------GGTCGATTTCAGGGAAATAGTTGACTTTCAAATTGACTTCTGGAATATATT--TGACTTTGAATTCTTTGATGCCATATATAATATA----TAA-TGTTTGAACACACTGTTAAGACCATTTAAAA-----------------------ATACCAGTATTCTGTTTAGAGTTGTTGTTTTGCTACTATGTTAATGTCAGTAAAATAATGTCAATTGGTATGTTTACAATCTCATATAGAAAGGCTAAAACAATTCAATTAGAAAGATAAATA-TATCAGGAAGTATAGTCG--GACATTGTGTAACAGAAAACACAACATTTTGATT-ACACTC--ATCAAAATCAAAATGAGATTA-----CCTATTATCGAAATCTCGATTATCCCATCTTCAC------------CAACATGTAGATAATAT-TAGTCCAGTCCTGCAA-CCAATTCTTCATCATCA---TCCATTACACATCTTCATCACCTGATATATCTCCATCTTCAGTGTCATCGGTGTCATCCATAACA----------CTT----------ACTACCATCACAT-T--T--CCAT------CAT---CATCATTATGATC--A-A----CACTTTTATCATCAT-A--ATC--AATCACC--TATCATCAGTATCATCTGCAGTTTCATTG-ACACCAT-CCTTA----AC-A-TTACCCGATACCTTCT-T-ATCATTA-CA--ATCAT---------TATCCTTA-------GCG-C--CAA----C---ATCATCATCACTGTAA----TCATCAT---CATCATCAGCAGCAGCA--AACATCTTCTTGTGTCCAGTAAT----ACCT-CCATCTCCAGTTCCATTGACACCATCCTAGCATTACC----T-AATACCTTTTTATCCTTACCATCATCATTTTATCACCAACATTATCATCATTAGCA-TA--TA-TATCTTTATCCATCCAGTATTATCTCCATCTCGAGTTCCATTGATGCTATTCTTACAGTAC-TTGATACAACGTTATCCT----TACCATCAT---CATTCTGATCACCAACATCATCTTCAATGTAATCATCTCATCCGTCCAGTGTTATTTCCATTTCAAGTTTCATTGGTGCCATTCTAACATTACCTTTTCCCACTTTATCCCTACCATCATTTTTATCACCAACATGATCTTCAATGTAATCATCCTCATCAGCAGCATACATCT-CATCTGTCCAGTATTATTTCCATTTCCAGTTTCATTGGTGCCATTCTAACATT-GCCTTTTACCACT----ATATCCTTACCATT-ATCATTCTTATCACCAACATCATC-ACTATAATCATCATCACCATCAGCAGCAGTA-TACATCTTCATCCATCCATGATTATC-TCC-CAACTCAAGTA-TCGTTGACGC-CATTCTTACATTACCCAATACCACCTTATTCTTA-GC--AT---TATCATCATCACCAACATAG--A-CA-CTGCA--A--TCAT-----CAT--C-AT---------CAGCAG-------------------------CATG-TATCTTC-AT--GCATCTTGT---ATTATGT-C---CATC--TCCAGTT-TTATTGACCGTATACC-ACTTTATAC-TTACCATC-TGTATCCATAT---A-CCAAAATCCT-----CATCACTGTGATCATC-ATCATCATC---ATCATCAACAGCAGCAGCAGTATATCTTCATC-CATCC--AGTTTTATCACCATGTCCAGTCCCATTGACACCATCATAGCATTACCGTAT-------ATCACTT-TATACTTACCATCTGTATCCATA-TACCAACATCat
gi|20 : acactccttacctgaatctatacgttggcaatcagtggatcccgtatgtaaaactttcgaaggactgtgcttctgtttctgaggaccgtCCA-GCATCAC---CATC-------AT---AATA---ATCAT-----CATCATCATAATCGTT-GTCGTCGTC---GTAATGAACAGCCGCA----TAT-T-TTCAT----TTA--TATATTAACT
gi|21 : TTCTGGCACATGGTAGACTTCAG--AA--TTGGCAT------TTTATTTCTGTCACATGGTAGACTTCAGTATCGGCAT----TTCATTTCTGGCACAT-G--GTAGACTTCgatatatgattcagttacat
gi|22 : tgtttaat------CAT---TATGTTTACTATTTGA-ATATTCATTCGTATCATCATCATCATC---ATC------ATCATCGACATTGTCTTCA
gi|22 : atgtgttcaatttgTCGT-----ATCATCAT---CATCATCATCATCATCGACATTGTCTTCATAATCATCTCtaatcatctccatgag
gi|23 : atgtgttcaatttgcattatgtttactatttgaatattcatTATTACCATCATCAGCAGCAGCATATcatgag
gi|23 : ATTACC---ATCATCAGCAGCAGCA----TAT-TTATCATTGCATT-------TTATCttatcattgcattttatcattattataactgttgttattactatcattataatcattgttatcgttat
gi|24 : tCATCAGCATTAGCATTATCA-CAATC--A--TCAT-----CAT--C-ATCGATATCAACAGCAGCAGCA-TAGC--CACCAC-------CACA-T-TCTAC-Aattattataactgttgttattactatcattataatcattgttatcgttat
gi|25 : AGAAGTAGTAGTAGTAGCATGTGTTGTCAT--TAACTTC-AT-----TATGGT-----CATTT-T---CATTATTCCATTT-TTATCGCC-----ATT-ATTGT---CATTAC---C-acatcaacagcaga
gi|26 : TTCTTAACCTAATCAATACAATCATCAACACCATCACAATCA-CTATA--A--CCAA-----CAT--C-AGCATTATCATCAGCAGCAGCAACAGCAGAAGatc
gi|27 : tCATTTT---T-TG-------CT---T-TT---ATTAT-----CATTATCAGCATCATC-ATCATCATA---ATAATCACCATCATCA----TAA-TC
gi|27 : TTATCAT----TATCAGCAT---CATCATCATCATAATAATCACCATCATCATAATCACCacc
gi|28 : cattttttgcttttaATAC-ATCATAATCATTATGATCTTGATC---GT----G-----------ATAATCACAATCATCATCAGCAGCAACAGCAGCA
gi|29 : T----TATCATTAT---CATCATGCTCAGCATCATCACTATCATGAAAATCATTTta
gi|3 : ttaTTCTGAGGA--TCGTCTTTCTAGGTTGATCTCTGGGACATGGTTGATCTCTGG---GACAT--GGTTGATTTCTGGGACAT-G--------------GTTGACTTCTG-GGATACA--------GCCGACTTCT-----------TT-G--TTGACATCTG------AGTCAACTTCTGGGACATGGTTGACTTCTGAATTAACTACTGGAATATATC--TGA---------------TGCCGTATAAAATATACAGTTAAGTTTTTAAA---ACTGTTAAGACCAATTAAAACTACATA--------TCAGGAAAATACCAGAATACTGTTTA-AGTT-TTGTTTTGCTACTATGTTAGTGTCGGTACAATAACGCCAATAAGTATGTTTGTAATCTTATGTAGAGA--CTAGAGCAATTTAATTACAAAGATAA--A-TATTATGAAGAATGG--A--GATATTattaatattaatatc
gi|31 : catactccttacctggatctatacctggaactataggtatgtggccaatcagtggatcccaaatgtaaagctttcaaatgaatggacttctgt--ATCGT---------CGTCGTGG-------TCGTC--CGGTTGTC---GTTGTCGTCGTCGTCA----TTATCAT---CATCATCATCAGC
gi|32 : AGCAGCAGCAGCAGCAT-------CAT--TATCCTCGAT--GT------T---ATTATC
gi|33 : GTCGTCGTCGTCGTCGTTGTTGTCATCATCATCAGCAACA--GCAGCAGCAGCAataaaattataattatcact
gi|4 : CAACAGAAGCAGTAGATATCTTCATCCGTCCAGTATT--ATATCCTTCTCGGGTCCCATTGACACCATCCTAG-CATGACTTTATATCACTTTATACTTACCATCTGTATCCATAT-ACCAACATCCTCATCACAGT------GNNNNNNNNNNNNNNNNNNNNNNNNNACAACAACAACAGCAGCAGAAGATATCTT-AATCAGTCCAGTATTATCTCCATCTGCAGTCCCATTTACACCATCTGAACATAACCGTATATCACTTTATACTTACCATCTGTATCCAT--ATACTAGCATTCTTATGACTGTGATCATCATCATCATCAACAATAACAGAAGTATATACCTTCATCCGTCCAGTATTAg
gi|4 : aAT----ACTTACCATCTGTA--TCCAT-------ATACTAGCATT--------------CTTATGACTGTGATCATCATCAT-----------CATCAACAATAACAGAAGTA--TA-TACCTTCATCCGTCCAGTATTATATCCATCTCGAGTCCCATTGACACCAtatccatctcgagtcccattgacacca
gi|5 : acaacagaagcagtagatatcttcatccgtccagtattatatccttctcgggtcccattgacaccatcctagcatgactttatatcactttatacttaccatctgtatccatataccaacatcctcatcacagtgnnnnnnnnnnnnnnnnnnnnnnnnnacaacaacaacagcagcagaagatatcttaatcagtccagtattatctccatctgcagtcccatttacaccatctgaacataaccgtatatcactttCACCA-TTACCATCATTT-TAATGACCATACTGATCATTCTCATCTTTACTGTC--AGA----TGCTCT-A-CATAATCATCAGC--AG-CAGCAGTAACAGCAGCATTATNNNNNNNNNNNNNN-NNNNNNN-N-NNN----NN-N-N-NNNNNNNNNNNNNN-N-NNNNNNN-NN--NNNNN---------N-TTGTCAGGAGCAGCAG-CAGCAG----C---ATGATCAACATCTTGA----TCAACAT---CATTATCATCATTATCATTATCAC--TGTTATGACCA-TAATGATCATTT-TCATCTTTACATC--TTGTC-----CCTGG--TTGAAATCTC-AATATC--ATCATCATTATCATCATCAT-----------CATCAGCAGCAGCAGTG-TAACCACCATCTTAATC
gi|5 : cattatcattatTCAG--GAGCAGCAGCAGCAGCATGATCAACATCTTGATCAACAT-CATTAT------CATC---ATTATCATTATCACTG-TTATGACCATAA--TGAT--CATTTTCATC-TTTACATCTTGTCCCTGGTTGAAAT-CTCAATATCATCATCATTATCATCATCATCATCAGCAGCAGCAGTGTAACCACCATCTTAATCATTATCattatcatca
gi|6 : cattatcattatcaccattaccatcattttaatgaccatactgatcattctcatctttactgtcagatgctctacataatcatcagcagcagcagtaacagcagcattatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnttgAACAGCTGCTTTCTATTATCAACATCATCACTAC--TTTATCTTTCTAGTCATCAGCATGATCTATTTTTATCAACAT---CATCATTACC---ACTATATCATCATC-ATC-ATCATTATCGTCCTCAT---AAGCAGCTGATTATGTGTAT--TTGTATTAGCTGCTATTAATTT--TGTT---C--ATAAACATCATCATCT------TCATTATGA-CTATATCA--TCAT-----CAT--T-GTCATCATCATCATCCTCCTCATTAGCAGCTG-AT-------TATG-TGTATTT------------GT---ATTAGCTGC---TATT-----AATT-TTGT----------TC-ATA--A-ACATCAT---C----------ATC--A-TC---ATTATGACTATATCATCATCATTGTC-ATCATCATC---CTCCTCAatca
gi|7 : atctcaaccatcagcCAAAGTTATTGG----TATTGTTAT----GTCATCATAATTATCATGATTGACATCGTAATtt
gi|7 : attctTATTGTTAT-GTCATCAT---AATTATC---ATGATTGACATC----GTAATGTCGT---A-ATCAT----TA----TC-A-TCGCTGGTTACATT--------ATCA-TA--TTCAT---------CATCACT----------G-C--TAA----C---ACCATCGTCATCGTAA----T-ATCATAGGCATCATCAgtcgtaatcattatcatcgctggttacattatcatattcatcatcactgctaacaccatcgtcatcgtaatatcataggcatcatcaaaattacagtgtacatcaacttagacaacagtgtcagatttattattaattgcattatcataagtaatgacatcgttatcatcgacatcatcaccaatatattcattatcgtcataataattagcatcgtcaataacatcg
gi|7 : attctcaaagttattggATTATCATCGCTGGT--T--ACAT------TAT---CATATTCA---TC--A-T----CACTGCTAACACCATCGTCATCGTAAT-------ATCATAGGCATCATC-AAAATTACAGTGTACATCAA-C-TTAGACAAC-AGT-GTCAGAT---TTAT-TATTAATTG-CATTATCATAAGTAATGACATCGTTA-------TCA-T--CGA----C---ATCATCACCAATATAT----TCATTAT---CGTCATAATAATTAGCA--aaattacagtgtacatcaacttagacaacagtgtcagatttattattaattgcattatcataagtaatgacatcgttatcatcgacatcatcaccaatatattcattatcgtcataataattagcatcgtcaataacatcg
gi|8 : attctcaaagttattggtattgttatgtcatcataattatcatgattgacatcgtaatgtcgtaatcACAATTTAATTATGAAGATAGATACTGT--GAAAGAAACGTAAATGGCATTAT-TAA-AGAAAGCA-----TTTT-ATTGACACTCTTGACGAGA--AAAA----ATTAACTTACCTATTATCCAAGTCTTGGCTACCCCAACTTTAT------------CAATATTTGAATGACTTCTAACCCAGG------ATCCGATTCTTTACTATCACACTCCATCATACATCTTTATCTACTGGCTTATTTCTATCTTCAGTTTCATCGATGTCATCCATAACATTACTTGtcgtcaataacatcg
gi|9 : CTTCTGT-TTCATCATCA--A-CAC---------CACCATTA-------TCA-T--CAA----CAATATCATCACCAACATCA----TTAACAA---CACCATTGTCAACAGCA--A
gi|9 : gTTA-TC--ATCAACAATATCATCACCAACATCATTAACA-ACACC--A--TTGT-----CAA--C-AGCAACAACAANNNNNNNNNNNNNNNNNNNNNNNN-------NNNN-NNNNNNN-NN--NNNNNNNNN---NNNNNNN-N---NNNN--NNNNNNN-NNNNNNNN-----NNN-NNNGCA-ACA--AC------A-------ATTTCA-GC---ATCAT-----TATCATCAACACCACC-ACCATCATC---ATCATcaacaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngcaacaacaatttcagcatcattatcatcaacaccaccaccatcatcatcataattttgtcaagtcttactaaatac
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|17 ): CACTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCCACCGTTATCATCATACCCCATCATCAGTGCTAT
Unaligned ( gi|30 ): TTGTCATTATTATCATTATTGTTATCAGTAATATCCTCTTTTTTTCCATCTCGCCCTCCTCCTCCT
Alignments
lowQualScore : 111111 22222 3333 11 2222222 22222222 11111111111111111 222222 11 2 22222222 6666666666666 1 1 11111 1 11 11 666666666666 555555555 222 22222222222 1111111 222222 111 111 1 11 111 2222222222222222 111111 222222222 11111111111111 1111 1111 11 333 2222 1 11 111 444444444 44444444444 1 11 1 11 1 1111 1 222 1 1111 222222 111 1 1 111 11111 1 11111 1 11 1 111111 11111 1111111 11 33333333333333333 111 111 1111 11111 111111111 44444444444444444444 33333333 22 11111 4444444 1111 11 111 222 1 2222 1 1 11 55555555555 11 22222 111 11 11 1 222222 222 11111 1 11 111 1 88888888888888888888 22222 11 111 222 1 88888888888888888888888888888888 1 1 222 1 11 77777777777777777777777
lowQualScore : 1 3 222222 1 33333 1 1 1 5555 11 1 8 5555555 4 1 8 0 99999999 1 77777777777777777 0 333333 1 0 0 11 6 6 0 00000000 7 6 6 9999999999999 2 6 0 0 0 6 1 3 0 6 0 44444 6 6 6 6 3 88 0 7 11 7 6 888888888888 1 6 777777777 0 333 1 9999999999 77777777777 9999999 888888 777 1 333 0 1 0 6 5 0 11 44 3 666 0 7 0 2 8 2 7777777777777777 1 2 0 222222 0 6 77 000000000 2 88888888888888 0000 888 3 1 1 0000 2 888 1 11 000 6 1111 0 0 33 2 3 3 444 2 444444444 0 3 0 1 77777777777 0 0 0 1 0 33 0 1 2 0 3 11 5 0 3 11 5 1 0000 888 888 2 3 0 5 111 1 1 1 5 22 1 0 1 0 0 6 0000 1 888888 6 666 0 4 1 1 0 22 777 88888 6 2 1 44444 6 3 0 44 2 3 1 7 333333 5 1 6 1 2 0 5 66 66 11111 66 4 2 6 444 0 4444444 44 55555555555555555 5 555 111 5 0000 4 0 22222 0 5 666666666 66666666666666666666 5 9999 0 1 5 8888 1 4 11111111 44 66666 3 1 1 0 0 6 3333333 8888 44 1 6 1 66 1 1 0 44 11 2 1 999 000 0 0 1 0000 2 1 7777 0 0 0 99 22222222222 1 1 33 1 2 00000 0 444 0 1 88 88 5 1 999999 111 1 1 1 77777 1 5 1 77 222 3 1 66666666666666666666 1 66666 1 88 999 1 1 2 22 111 1 1 22 1 5 1 1 66666666666666666666666666666666 1 5 5 1 22 1 1 1 2 22 1 1 1 111 5 88 77777777777777777777777 1 1 1 1
lowQualScore : . . ...... . ..... . . . .... .. . . ....... . . . . ........ . ................. . ...... . . . .. . . . ........ . . . ............. . . . . . . . . . . . ..... . . . . . .. . . .. . . ............ . . ......... . ... . .......... ........... ....... ...... ... . ... . . . . . . .. .. . ... . . . . . . ................ . . . ...... . . .. ......... . .............. .... ... . . . .... . ... . .. ... . .... . . .. . . . ... . ......... . . . . ........... . . . . . .. . . . . . .. . . . .. . . .... ... ... . . . . ... . . . . .. . . . . . . .... . ...... . ... . . . . . .. ... ..... . . . ..... . . . .. . . . . ...... . . . . . . . .. .. ..... .. . . . ... . ....... .. ................. . ... ... . .... . . ..... . . ......... .................... . .... . . . .... . . ........ .. ..... . . . . . . ....... .... .. . . . .. . . . .. .. . . ... ... . . . .... . . .... . . . .. ........... . . .. . . ..... . ... . . .. .. . . ...... ... . . . ..... . . . .. ... . . .................... . ..... . .. ... . . . .. ... . . .. . . . . ................................ . . . . .. . . . . .. . . . ... . .. ....................... . . . .
lowQualScore : 0 2 444444 4 22222 0 4 4 8888 00 0 0 2222222 2 0 0 8 00000000 0 88888888888888888 8 000000 4 8 8 00 4 7 7 33333333 3 7 7 7777777777777 0 7 7 7 7 7 0 2 0 5 8 22222 7 7 7 7 3 33 7 3 00 3 7 333333333333 0 7 000000000 7 333 0 7777777777 66666666666 5555555 888888 555 2 888 0 0 8 0 0 8 00 00 2 666 8 6 4 8 0 2 4444444444444444 0 8 2 000000 2 7 99 000000000 2 44444444444444 6666 888 1 2 0 6666 2 888 0 00 333 7 2222 0 2 22 5 2 5 222 5 555555555 2 2 8 0 55555555555 2 2 2 2 0 88 0 0 0 8 2 88 5 2 2 88 7 7 6666 888 888 5 1 2 5 000 0 0 0 5 00 0 7 0 7 7 7 8888 0 000000 5 222 0 2 2 2 0 55 555 55555 7 0 0 33333 7 3 7 33 0 7 0 3 000000 0 0 7 6 2 4 0 99 99 11111 11 4 8 8 888 2 4444444 11 88888888888888888 7 777 000 0 6666 8 4 55555 1 0 999999999 44444444444444444444 0 1111 9 1 0 4444 0 3 00000000 33 77777 7 0 0 7 7 7 3333333 7777 77 0 7 4 00 4 4 8 66 00 2 0 555 555 2 0 0 5555 5 0 2222 0 0 2 88 55555555555 2 0 88 0 0 55555 7 000 2 0 33 33 0 0 000000 000 0 0 0 00000 0 0 0 55 333 3 0 00000000000000000000 0 00000 0 55 555 0 0 5 00 000 0 0 00 0 0 0 0 00000000000000000000000000000000 0 0 0 0 00 0 0 0 5 00 0 0 0 000 0 00 00000000000000000000000 0 0 0 0
consensus : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTCTGGNACATGGTTGACTTCTG--GA--TCGGCTT-CTAGGTTNACTTCTGGGACATGGTTGACTTCTGGA--GACAT--GGTTGATTTCTGGNACAT-G--TT-NACTTCCGGGTNGACTTCTG-GGACATA--------GCNGACTTCTAGGTAGATGCNTTAG--TTGATTTCTG------GGTCGACTTCTGGGAAATGGTTGACTTCCGAATTGACTTCTGGAATATATT--TGACTTT-AATTCTTTGATGCCGTATATAATATACAGTTAAGTTTTTAAACACACTGTTAAGACCATTTAAAACTACATA--------TCAG-AAAATACCAGTATTCTGTTTAGAGTTGTTGTTTCGCTACTATGTTAATGTCGGTACAATAACGTCGATTGGTATGTTTACAATCTCATATAGAGAGGCTAAAACAATTTAATTANAAAGATAAATA-TATCAGGAAGAATAGTCA--GACATTGTGTAACAGAAAACACAACATTTTGATT-ACACTC--GACGAAATCAAAATGAGATTAACTTACCTATTATCCAAATCTCGATTATCCCATCTTCAC------------CAACATGTAGATAATNTCTAGTCCAG------NA-CCGATTCTTCATCATCA---TCCATTACACATCTTCATCACCTGATTTATCTCNATCTTCAGTGTCATCGGTGTCATCCATAACATTACCTGATACTTCCACACACCAACTACCATCACTT-T--T--CCAT------CAT---CATCTTTACGATCA-ACGCTNTTATCATCATCATCATC--AATCACC--TATCATCGGCATCATCTGCAGTTTCATTG-ACACCATCCTTA----AC-A-T-GCCNGATACCTTCT-T-TTCATCG-CA--ATCAT---------CATCGTTA-------TCG-C--CAA----C---ATCATCGTCATCGTNA----TCATCAT---CATCATCATCAGCAGCA--AACA--CTCTTGTGTCCAGTAAT----ACCT-CCATCTCCAGNTCCATTGACACCATCCTAGCATTAAA----C-AATACCTTATTATCNTTACCATCATCAT-----------CATCAGCAGCAGCAGTA-TA--TA-TATCTTNATCCGTCCAGTATTATCTCCATCTCGAGTTCCATTGACGCCATTCTTACAGTACTTTGATACAACGTTAT-CGT----TATCATCAT---CATC---ATNATCACCATCATCATCGTCATCGTAATCATCTCATCCGTCCAGTGTTATTTCCATTTCAAGTTTCATTGGTGCCATTCTAACATTACCTTTTCCCACTTTATCCCTACCATCATTTTTATCGCCAACATGATCTTCANTGCAATCATCNTCACCANCAGCATACATCTTCATCCGTCCANNGTTATCTCCATCTCNAGTTTTATCGNCGCCGTTCTAACATC-GCCTTNTACCACC----TTATCGTTAC--TC-ATCGTTCTTGTCACCAACATCATC-ACTATAATCATCAT---CATCAGCAGC---A-TATATCTTCATCCATCCATNATTATC-TCC-CATCTCAAGTA-CCGTTGACGN-CATCCTTACATTACCCGATACCANCTTATTCTTA-CC--ATCAACANCATCATCACCAACATCATCATCA-CTACA--A--TCAT-----CAT--C-ATCATCATCAACAGCAGCAGCAGTAGCAGCAGCAT-------CATG-TATCTTC-AT--GCGTCTAGT---ATTATCT-C---CATC--TCCAGTT-TT----ATCGAC-----ATC-AT--TCTA-A-CATTAC---C-TN-------AT---A-TC---ATCATCATCATCATCATCGTC-ATCATCATC---GTCATCANCAGCAGCA----TAT-TCTTCATC-CATTA--AGTATTATCTCCATNTCCAGTCCNATCGACACCGTCATAACATTACCTTAT-------ATCACTT-NA-ACTTACCATCGNCATCNTTACCACCAACGTCATCGCCACCGTCGTCGTCGTCGTCATCGCCAGCGNCA--GCAGCAGCANCAT--ACATCTTCACCGATCCACCATTATC-TCCNTNTC-CAGCNTCATTGCCACCATC-TTAAC-ATTACCT-ATACCA-GCTTATACT-TATCAACANCAT--CANCACCGC--TACTCATCATCATCATCAG--CAGCAGCAGCAGCAGCATTAT--ATATCTTCATC--CATCCANTATAACCTCCATCTCTANTNCCATTGNCACCGATTNTGACCATNACCTGATACCATCTTAATC-TTANCATCTTGTCC---GT----AT-C-CAA---CATCATCATNATCATCATCAGCAGCAGCAGCAGCAGCGTAACCACCATCTTNACCATTATCCAGTATTTTCTCCATCTCCAGTCCAATTGACCCAATTCTAAATTTACCTGATACCACCCAATACTTACAACCATCATCCTTATCACCAACATCATCATTAATGTTATTACCATCAACAGCAGCAGCATATATCTTCACCCGTCCAGTATTTTNTNTCCNTCTCCGGTCCNNTTGACACCATCCTAGACATNACCTNATATCACCTTATACTTACCATCNNCATCCNTATCACCNACATCCTCATCACNGTT-----GNNNNNNNNNNNNNNNNNNNNNNNNNACAACAACAACAGCAGCAGAANATATCTTCAACCAGTCCAGTATNATCTCNNTCTNCAGTCCCANTNACGCCATCCGAACATAACCNNACACNANCTTATACTTACCANCTGTATCCATCAACACTGGCATTCTTATGACTGTGATCATCATCATCATCAGCAGTAGCAGNAGCATATACNTTCATNCGTCNAGTATTA
Reference ( family-1427 ) : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTCTGGNACATGGTTGACTTCTG--GA--TCGGCTT-CTAGGTTNACTTCTGGGACATGGTTGACTTCTGGA--GACAT--GGTTGATTTCTGGNACAT-G--TT-NACTTCCGGGTNGACTTCTG-GGACATA--------GCNGACTTCTAGGTAGATGCNTTAG--TTGATTTCTG------GGTCGACTTCTGGGAAATGGTTGACTTCCGAATTGACTTCTGGAATATATT--TGACTTT-AATTCTTTGATGCCGTATATAATATACAGTTAAGTTTTTAAACACACTGTTAAGACCATTTAAAACTACATA--------TCAG-AAAATACCAGTATTCTGTTTAGAGTTGTTGTTTCGCTACTATGTTAATGTCGGTACAATAACGTCGATTGGTATGTTTACAATCTCATATAGAGAGGCTAAAACAATTTAATTANAAAGATAAATA-TATCAGGAAGAATAGTCA--GACATTGTGTAACAGAAAACACAACATTTTGATT-ACACTC--GACGAAATCAAAATGAGATTAACTTACCTATTATCCAAATCTCGATTATCCCATCTTCAC------------CAACATGTAGATAATNTCTAGTCCAG------NA-CCGATTCTTCATCATCA---TCCATTACACATCTTCATCACCTGATTTATCTCNATCTTCAGTGTCATCGGTGTCATCCATAACATTACCTGATACTTCCACACACCAACTACCATCACTT-T--T--CCAT------CAT---CATCTTTACGATCA-ACACTNTTATCATCATCATCATC--AATCACC--TATCATCGGCATCATCTGCAGTTTCATTG-ACACCAT-CTTA----AC-A-T-GCCNGATACCTTCT-T-TTCATCG-CA--ATCAT---------CATCGTTA-------TCG-C--CAA----C---ATCATCGTCATCGTNA----TCATCAT---CATCATCATCAGCAGCA--AACA--CTCTTGTGTCCAGTAAT----ACCT-CCATCTCCAGNTCCATTGACACCATCCTAGCATTAAA----C-AATACCTTATTATCNTTACCATCATCAT-----------CATCAGCAGCAGCAGTA-TA--TA-TATCTTNATCCGTCCAGTATTATCTCCATCTCGAGTTCCATTGACGCCATTCTTACAGTACTTTGATACAACGTTAT-CGT----TATCATCAT---CATC---ATCATCACCATCATCATCGTCATCGTAATCATCTCATCCGTCCAGTGTTATTTCCATTTCAAGTTTCATTGGTGCCATTCTAACATTACCTTTTCCCACTTTATCCCTACCATCATTTTTATCGCCAACATGATCTTCANTGCAATCATCNTCACCANCAGCATACATCTTCATCCGTCCANNGTTATCTCCATCTCNAGTTTTATCGNCGCCGTTCTAACATC-GCCTTNTACCACC----TTATCGTTAC--TC-ATCGTTCTTGTCACCAACATCATC-ACTATAATCATCAT---CATCAGCAGC---A-TATATCTTCATCCATCCATNATTATC-TCC-CATCTCAAGTA-CCGTTGACGN-CATCCTTACATTACCCGATACCANCTTATTCTTA-CC--ATCAACANCATCATCACCAACATCATCATCA-CTACA--A--TCAT-----CAT--C-ATCATCATCAACAGCAGCAGCAGTAGCAGCAGCAT-------CATG-TATCTTC-AT--GCGTCTAGT---ATTATCT-C---CATC--TCCAGTT-TT----ATCGAC-----ATC-AT--TCTA-A-CATTAC---C-TG-------AT---A-TC---ATCATCATCATCATCATCGTC-ATCATCATC---GTCATCANCAGCAGCA----TAT-TCTTCATC-CATTA--AGTATTATCTCCATNTCCAGTCCNATCGACACCGTCATAACATTACCTTAT-------ATCACTT-NA-ACTTACCATCGNCATCNTTACCACCAACGTCATCGCCACCGTCGTCGTCGTCGTCATCGCCAGCGNCA--GCAGCAGCANCAT--ACATCTTCACCGATCCACCATTATC-TCCNTNTC-CAGCNTCATTGCCACCATC-TTAAC-ATTACCT-ATACCA-GCTTATACT-TATCAACANCAT--CANCACCGC--TACTCATCACCATCATCAG--CAGCAGCAGCANCAGCATTAT--ATATCTTCATC--CATCCANTATAACCTCCATCTCTANTNCCATTGNCACCGATTNTGACCATNACCTGATACCATCTTAATC-TTANCATCTTGTCC---GT----AT-C-CAA---CATCATCATNATCATCATCAGCAGCAGCAGCAGCAGCGTAACCACCATCTTNACCATTATCCAGTATTTTCTCCATCTCCAGTCCAATTGACCCAATTCTAAATTTACCTGATACCACCCAATACTTACAACCATCATCCTTATCACCAACATCATCATTAATGTTATTACCATCAACAGCAGCAGCATATATCTTCACCCGTCCAGTATTTTNTNTCCNTCTCCGGTCCNNTTGACACCATCCTAGACATNACCTNATATCACCTTATACTTACCATCNNCATCCNTATCACCNACATCCTCATCACNGTT-----GNNNNNNNNNNNNNNNNNNNNNNNNNACAACAACAACAGCAGCAGAANATATCTTCAACCAGTCCAGTATNATCTCNNTCTNCAGTCCCANTNACGCCATCCGAACATAACCNNACACNANCTTATACTTACCANCTGTATCCATCAACACTGGCATTCTTATGACTGTGATCATCATCATCATCAGCAGTAGCAGNAGCATATACNTTCATNCGTCNAGTATTA
gi|1 : TTCTGAGGAC------------CGCATCTCCACGTACATGCGTAAAAATTG--TTCTGAGATATGGTTGACCTTT----AA--GTCGACTTCTGTGTTTACTTCTGGAACATGGT--TGATTT
gi|1 : tgtTTCTGAGATATGGTTGACCTTTA--AG--TCGACTT-CTGTGTTTACTTCTGGAACATGGTTGATTTCTGAA---ACAT--GGTTGACTTCTGGAACAT-G--TT-TTTTTCTGGATAGACTTCTG-G-ACATA--------GCAGACTTCTAGATAGATGCCTTAG--TTGATTTCTT------GGTCGATTTCAGGGAAGTGGTTGACTTTCAAATTGACTTCTGGAATATATT--TGACTTTCAATTCTTTGATACCATATATAATATACAAT---GTTT--AAACACACTGTTAAGACCATTTAAAACTACATAATATTTTATCAGTAAAATACCTGTATTCTTTTTAAAGTTGTTGTTTCACTACTATGTTAATGTCGGTACAATTATGTTGACTGGTATGCTTACAATCTCATATAGAGAGGCTAAAACAATTTAATTAGAAAGATAAATA-TATCAGGAAGAATAGTCA--GACATTGTGTAACAGAAAACACAACATTTTGATT-ACATTC--GACAAAATCCTATTAAGATTAACTTA----TTATCCAAATCTCGATTATCCCATCTTCACCAACAGCTTCACCAACATGTAGATAATGTCCAGTCCAG------CAACCAATTCTTCATCACCA---TCCATTACACATCTTCATCACCTGATTTATCTCAATCTTCAGTGTCATCGGTGTCATCCATAACATTACCTGATACTTCCACACACTAACTACCATCACTT-T--T--CCAT------CAT---CATCCTTATGATCA-ACACTTTTATCATCATCATCATC--AATCACC--TATCATCAGTATCATCTGCAGTTTCATTG-ACACCATCCTTA----ACAA-T-GCCCGATACCTTCT-T-TTCATTG-CA--ATCAT---------CATCCTTA-------TCA-C--CAA----C---ATCATCATCACTGTAA----TCATCAT---CATCATCATCAGCAGCA--AACA---TCTTGTGTCCAGTAAT----ACCT-CCATCTCCAGCTCCATTGACACCATCCTAGCATTAAA----CAAATACCTTATTATCCTTACAATCATCAT-----------CATCAGTAGCAGCAGTA-TA--TA-TATCTTGATCCGTCCAGTATTATCCCCATCTCCAGTTCCATTGACACC-TTCTTACAGTAC-TTGATACAACGTTAT-CCT----TACCATCAT---CATT---ATGATCACCAACATCATCATCACTGTAATCATCTCATCCGTCCAGTGTTATTTCCATTTCAAGTTTCATTGGTGCCATTCTAACATTACC-TTTCCCACTTTATCCCTACCATCATTTTTATCGCCAACATGA---TCACTGCAATCATCATCACCATCAGTATACATCTTCATCCGTCCATGGTTATCTCCAACTCAAGTATTATTGACACCATTCTAACATT-TCCCGGTACCACC----TTATTCTTAC--TC-ATCATTCTTATCACCAACATCTTC-ACTGCAATCATCAT---CATCAGCAGC---A-TGTATCTTCATGCGTCTAGTATTATC-T-C-CATCTCCAATT-CTATTGACAA-CAACCTAACATTACCAGATACCAGCTTATTCTTA-CC--ATCAACAACTTTATCGCCAACATCATCATCA-CTGCA--A--TCAT-----CAT--C-ATCATTATTAGCAGCAGCAGCAGTAGCAGAAGCAG-------CATG-TATCTTT-AT--GTGTCTAGT---ATTATCT-C---CATC--TCCAGTT-TT----ATTGAC-----AGC-AT--CCTA-A-CATTAC---C-TG-------AT---A-CC---ACCTTCATCACCATCACTGTT-ATCACCATC---ATCATCATCAGCAGCA----TATCTCTTCACC-TATTA--AGTACTATCTTCATCTCCAGTTCACTTGACACCAGCCTAACATTACCTGAT-------ACCACCTAAA-ACTTACCATCATCATCTTTACCACCAACACCATCACCACTGTTATCTTCATCATCATCACCAGCTTCA--GCAGCAGCAGCAT--ATATCTTCACCTATCCAGTATTATC-TCCTTCTC-CAGTCTCATTGACACCATC-CTAAC-ATTACCTGATACCA-GCTTATACT-TACCAACATCAT--CAACACTGTGATACTCATCACCATCATCAG--CAGCAGCAGCAGCAGCATTAT--ATATCTTCACC--TATCCAGTATAACCTCCATCTCTAGTCCCATTGAC-CCAATTCTAA-CATTACCTAATACCACCTTAAAC-TTACCATCTTGTCC---AT----ATAC-CAA---CATCATTATCATCATCATCAGGAGCAGCAGCAGCAGCATA-----TATCTTTACC--TATCCAGTATTTTCTCCATCTCCAGTCCAATTGACCCAATTCTAAATTTACCTGATACCACCCAATACTTACAACCATCATCCTTATCACCAACATCATCATTAATGTTATTATCATCAACAGCAGCAGCATATATCTTCACTTATCCAGTATTTTTTCTCCATCTCCAGTCCATTTGACACCATTCT-GACATTACCTGATATCACCTTATACTTACCATCATCATCCTTATCATCTACATCCTCATCACTGTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTATATCTTCAACTA-TCCAGTATAATCTCATTCTCCAGTCTCAATGATGCCATCCTAACATAACCTGACACAAGCTTATACTTACCAAC---AT-CATCAACACTG-----------------------ATCATCATCAGCAGTAGCAGCAGCATATATATTCATGTATCGAGTATTActgaaacatggttgacttctggaacatgtttttttctggatagacttctggacatagcagacttctagatagatgccttagttgatttcttggtcgatttcagggaagtggttgactttcaaattgacttctggaatatatttgactttcaattctttgataccatatataatatacaatgtttaaacacactgttaagaccatttaaaactacataatattttatcagtaaaatacctgtattctttttaaagttgttgtttcactactatgttaatgtcggtacaattatgttgactggtatgcttacaatctcatatagagaggctaaaacaatttaattagaaagataaatatatcaggaagaatagtcagacattgtgtaacagaaaacacaacattttgattacattcgacaaaatcctattaagattaacttattatccaaatctcgattatcccatcttcaccaacagcttcaccaacatgtagataatgtccagtccagcaaccaattcttcatcaccatccattacacatcttcatcacctgatttatctcaatcttcagtgtcatcggtgtcatccataacattacctgatacttccacacactaactaccatcacttttccatcatcatccttatgatcaacacttttatcatcatcatcatcaatcacctatcatcagtatcatctgcagtttcattgacaccatccttaacaatgcccgataccttcttttcattgcaatcatcatccttatcaccaacatcatcatcactgtaatcatcatcatcatcatcagcagcaaacatcttgtgtccagtaatacctccatctccagctccattgacaccatcctagcattaaacaaataccttattatccttacaatcatcatcatcagtagcagcagtatatatatcttgatccgtccagtattatccccatctccagttccattgacaccttcttacagtacttgatacaacgttatccttaccatcatcattatgatcaccaacatcatcatcactgtaatcatctcatccgtccagtgttatttccatttcaagtttcattggtgccattctaacattacctttcccactttatccctaccatcatttttatcgccaacatgatcactgcaatcatcatcaccatcagtatacatcttcatccgtccatggttatctccaactcaagtattattgacaccattctaacatttcccggtaccaccttattcttactcatcattcttatcaccaacatcttcactgcaatcatcatcatcagcagcatgtatcttcatgcgtctagtattatctccatctccaattctattgacaacaacctaacattaccagataccagcttattcttaccatcaacaactttatcgccaacatcatcatcactgcaatcatcatcatcattattagcagcagcagcagtagcagaagcagcatgtatctttatgtgtctagtattatctccatctccagttttattgacagcatcctaacattacctgataccaccttcatcaccatcactgttatcaccatcatcatcatcagcagcatatctcttcacctattaagtactatcttcatctccagttcacttgacaccagcctaacattacctgataccacctaaaacttaccatcatcatctttaccaccaacaccatcaccactgttatcttcatcatcatcaccagcttcagcagcagcagcatatatcttcacctatccagtattatctccttctccagtctcattgacaccatcctaacattacctgataccagcttatacttaccaacatcatcaacactgtgatactcatcaccatcatcagcagcagcagcagcagcattatatatcttcacctatccagtataacctccatctctagtcccattgacccaattctaacattacctaataccaccttaaacttaccatcttgtccatataccaacatcattatcatcatcatcaggagcagcagcagcagcatatatctttacctatccagtattttctccatctccagtccaattgacccaattctaaatttacctgataccacccaatacttacaaccatcatccttatcaccaacatcatcattaatgttattatcatcaacagcagcagcatatatcttcacttatccagtattttttctccatctccagtccatttgacaccattctgacattacctgatatcaccttatacttaccatcatcatccttatcatctacatcctcatcactgttnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntatatcttcaactatccagtataatctcattctccagtctcaatgatgccatcctaacataacctgacacaagcttatacttaccaacatcatcaacactgatcatcatcagcagtagcagcagcatatatattcatgtatcgagtatta
gi|10 : tgtttctgaggaccgcatctccacgtacatgcgtaaaaattgATCGACATCGT-ATAACAATACTTTATCGACATAGTCATTG-CA-AACTATTATCGACATCGTCACTGCCAATGCCATTGCCACCGTTTTCGACATCGTAATTGTCATCGTCATTGCTG--ACGTTATTGACATTTTCATTGA--CACCATTATC-TCCAT-------CGTTATTGCCACCGTTATTGAT-ATTGTCA-ATATCA---TTG---T-TATCGACAGCGT--CATTGCCAT--T-TTCAT
gi|11 : ttTCATCATCATCGTCGTTGTCGTCGTCGCCGCC-GNNNNN--NNNNNNNNNNNNN--NNNNNNNNNNNNNNNCATTATTGTCATATTTATCACAGCATCATAATCATCATT-TTAAT-ATTAACT-ATACCGTGATCATA----ATCAATATCATACCATTACCAC---AGTCATCATCATTATCGGTATAGCAGCAACATCAATATTAT--ATAGCAGCATC--t
gi|12 : aCATTGTTGATTTCTT--GA--TTAACTA-CTAGGCTGACATCTTAGATATGGTTGACTTCTGGGCTGGCATCTGATATATTGTTGGTTTAT-GGTTT-TACTCCCGGGTTGACTACTA-GGATATGACTTAGAGGCTGACTTCT-GGTA----CATTA---TTGATTTCTG------AAACAACTTCTGGGAAATGGTTGACTTCTGGGCTGATATCTGG--TACATTGCTGATTTagaagacac
gi|13 : AACATCATCATCATCTACA--AATTCATGTTACCTT--CTAACATCATCTACATCATCAGCATTATATTCAACAT-------CATGATATCTTC-CA--ACATCTA-T---ATCATCA-CTATCATC--TTCAATT-TC----AT-GAT-----ATC--T--TCTA-A-TATCAA---CATT-------ATC--A-TC---TTCAACATCATGATAATCTTCCAACATCATCTAAATCATCACCATCA-----------TCTTCA
gi|14 : ccttgCAACAACATCAACACCACTATCAAC-----CATCAGCAATAGCACCA--GCAGCAGCACCAC---CACCGCCACCA--CCACCGTTACC-TCCAAGAC-CACCCTCA---CCACAATC-TCAACCACCACC----ACCA-AC--A-ACAATAACAACAACAT--CAACACCAC--TACCAACCATCATCAGCAG--CAGCAGTACCAGCAGCaca
gi|15 : TCATCA-TTACA--A--CC-------CATAGC-TTCATCATCAACAGCAGCATCAATAGCATTCTCAT-------CAT--CATCAAC-ATAAGTGGC-AGTGACATTATTT-CA--CACC--ATCAG-----------CAGC-----ATCAAT--TC-----CATTGT---A-TA-------A----A-TC---ACCACCACCATCATCA--GTC-ATCATCATT---GTCATCA
gi|16 : tT-----CAT--C-ATCATTATCAGCAGCAGCA
gi|16 : TCATCATC---ATTATCAGCAGCAGCA--------TCTTTAT--CATTA--CTTTTTATCtctttatcattactttttatcattatcattattatttttgttatcattatcattaccatgatgatggtgatggtgatggtgatgatcatgatgatacagtacgattattataa
gi|16 : TCAT---------CATCATTA-------TCA-G--CAG----C---AGCATCTTTATCATTACTTTTTATCAT---TATCATTATTAattatcattattatttttgttatcattatcattaccatgatgatggtgatggtgatggtgatgatcatgatgatacagtacgattattataa
gi|16 : AT-CGTACTGTATCATCATGATCATC---ACCATCACCATCACCATCATCATGGTAATGATtttttgttatcattatcattaccatgatgatggtgatggtgatggtgatgatcatgatgatacagtacgattattataa
gi|18 : tcatcatcattatcagcagcagcatctttatcattactttttatcattatcattattatttttgttatcattGTTGTT----ATCATC-----AGT-ATAATC-A-A-TATTA------TA-------AT---T-TC-----TATCATCATAACCATGATC-ATCATTATT---GTCATCATCAGCA-----------TCCTCAT--CATTAATAGTATTATtattataa
gi|19 : ggctgctaaatttaatatcATCGCTATCACTAGCTTTTTCGTCAACGGT--AGCATC-AT-TTACATCA------TTATTGTTA---TC-GTCGTTGTCGGCGTCATCATCATC-ATCAAAATCATCAT---CATCAGCAGC---A-tatt
gi|2 : catcaccCATGTTTG-CTTCTG--GAACTTGGTT-----GGTTAACTTCTGGAACATGGTTGAATTCTGGA---ACAT--GGTTGACTTCTGAAACATAG--TT-GACTTCTGGATAGACTTATT-GGACATA--------GCAGACTTCAAGGTAGATGCCTAAG--TTGATTTATA------GGTCGATTTCAGGGAAATAGTTGACTTTCAAATTGACTTCTGGAATATATT--TGACTTTGAATTCTTTGATGCCATATATAATATA----TAA-TGTTTGAACACACTGTTAAGACCATTTAAAA-----------------------ATACCAGTATTCTGTTTAGAGTTGTTGTTTTGCTACTATGTTAATGTCAGTAAAATAATGTCAATTGGTATGTTTACAATCTCATATAGAAAGGCTAAAACAATTCAATTAGAAAGATAAATA-TATCAGGAAGTATAGTCG--GACATTGTGTAACAGAAAACACAACATTTTGATT-ACACTC--ATCAAAATCAAAATGAGA-----TTACCTATTATCGAAATCTCGATTATCCCATCTTCAC------------CAACATGTAGATAATAT-TAGTCCAGTCCTGCAA-CCAATTCTTCATCATCA---TCCATTACACATCTTCATCACCTGATATATCTCCATCTTCAGTGTCATCGGTGTCATCCATAAC----------ACTT----------ACTACCATCACAT-T--T--CCAT------CAT---CATCATTATGATCA-ACACTTTTATCATCAT-A--ATC--AATCACC--TATCATCAGTATCATCTGCAGTTTCATTG-ACACCATCCTTA----AC-ATT-ACCCGATACCTTCT-T-ATCATTA-CA--ATCAT---------TATCCTTA-------GCG-C--CAA----C---ATCATCATCACTGTAA----TCATCAT---CATCATCAGCAGCAGCA--AACATCTTCTTGTGTCCAGTAAT----ACCT-CCATCTCCAGTTCCATTGACACCATCCTAGCATTACC----T-AATACCTTTTTATCCTTACCATCATCATTTTATCACCAACATTATCATCATTAGCA-TA--TA-TATCTTTATCCATCCAGTATTATCTCCATCTCGAGTTCCATTGATGCTATTCTTACAGTAC-TTGATACAACGTTAT-CCT----TACCATCAT---CATT---CTGATCACCAACATCATCTTCAATGTAATCATCTCATCCGTCCAGTGTTATTTCCATTTCAAGTTTCATTGGTGCCATTCTAACATTACCTTTTCCCACTTTATCCCTACCATCATTTTTATCACCAACATGATCTTCAATGTAATCATCCTCATCAGCAGCATACATC-TCATCTGTCCAGTATTATTTCCATTTCCAGTTTCATTGGTGCCATTCTAACATT-GCCTTTTACCACT----ATATCCTTACCATT-ATCATTCTTATCACCAACATCATC-ACTATAATCATCATCACCATCAGCAGCAGTA-TACATCTTCATCCATCCATGATTATC-TCC-CAACTCAAGTA-TCGTTGACGC-CATTCTTACATTACCCAATACCACCTTATTCTTA-GC--AT---TATCATCATCACCAACATAG--A-CA-CTGCA--A--TCAT-----CAT--C-AT---------CAGCAG-------------------------CATG-TATCTTC-AT--GCATCTTGT---ATTATGT-C---CATC--TCCAGTT-TT----ATTGACCGTATACC-AC--TTTATA-C-TTACCATC-TGTATCCATAT---A-CCAAAATCCTCATCACTGTGATCATC-ATCATCATC---ATCATCAACAGCAGCAGCAGTATATCTTCATC-CATCC--AGTTTTATCACCATGTCCAGTCCCATTGACACCATCATAGCATTACCGTAT-------ATCACTT-TATACTTACCATCTGTATCCATA-TACCAACATCat
gi|20 : acactccttacctgaatctatacgttggcaatcagtggatcccgtatgtaaaactttcgaaggactgtgcttctgtttctgaggaccgtCCA-G-CATCAC---CATC-------AT---AATA---ATCATCATCATCATAATCGTT-GTCGTCGTC---GTAATGAACAGCCGCA----TAT-T-TTCAT----TTA--TATATTAACT
gi|21 : TTCTGGCACATGGTAGACTTCAG--AA--TTGGCAT------TTTATTTCTGTCACATGGTAGACTTCAGTATCGGCAT----TTCATTTCTGGCACAT-G--GTAGACTTCgatatatgattcagttacat
gi|22 : tgtttaatGTTCAATTTGCATTATGTTTAC--TATTTGAATAT----TCATTCGT-----ATCATCAT---CATC---ATCATCATCATCGACATTGTCTTCATAATCATCTC
gi|23 : atgtTATTACCATCATCAGCAGCAGCATATcatgag
gi|23 : ATTACC---ATCATCAGCAGCAGCA----TAT-TTATCATTGCATT-------TTATCttatcattgcattttatcattattataactgttgttattactatcattataatcattgttatcgttat
gi|24 : tCATCAGCATTAGCATTATCA-CAATC--A--TCAT-----CAT--C-ATCGATATCAACAGCAGCAGCA-TAGC--CACCAC-------CACA-T-TCTAC-Aattattataactgttgttattactatcattataatcattgttatcgttat
gi|25 : AGAAGTAGTAGTAGTAGCATGTGTTGTCAT--TAACTTC-AT-----TATGGT-----CATTT-T---CATTATTCCATTT-TT----ATCGCC-----ATT-AT--TGT----CATTAC---C-acatcaacagcaga
gi|26 : TTCTTAACCTAATCAATACAATCATCAACACCATCACAATCA-CTATA--A--CCAA-----CAT--C-AGCATTATCATCAGCAGCAGCAACAGCAGAAGatc
gi|27 : tCATTTTT----TGCTTTTAT-TATCATTAT-CAG----CATCATCAT---CATCATAATAATCACCATCATCATAATCACC
gi|27 : TTAT-CAT----TATCAGCAT---CATC---ATCATCATAATAATCACCATCATCATAATCACC
gi|28 : cattttttgcttttaATAC-ATCATAATCATTATGATCTTGATC---GT----G-----------ATAATCACAATCATCATCAGCAGCAACAGCAGCA
gi|29 : T----TATCATTAT---CATC---ATGCTCAGCATCATCACTATCATGAAAATCATTTta
gi|3 : ttaTTCTGAGGA--TCGTCTTTCTAGGTTGATCTCTGGGACATGGTTGATCTCTGG---GACAT--GGTTGATTTCTGGGACAT-G--------------GTTGACTTCTG-GGATACA--------GCCGACTTCT-----------TT-G--TTGACATCTG------AGTCAACTTCTGGGACATGGTTGACTTCTGAATTAACTACTGGAATATATC--TGA---------------TGCCGTATAAAATATACAGTTAAGTTTTTAAA---ACTGTTAAGACCAATTAAAACTACATA--------TCAGGAAAATACCAGAATACTGTTTA-AGTT-TTGTTTTGCTACTATGTTAGTGTCGGTACAATAACGCCAATAAGTATGTTTGTAATCTTATGTAGAGA--CTAGAGCAATTTAATTACAAAGATAA--A-TATTATGAAGAATGG--A--GATATTattaatattaatatc
gi|31 : catactccttacctggatctatacctggaactataggtatgtggccaatcagtggatcccaaatgtaaagctttcaaatgaatggacttctgt--ATCGT---------CGTCGTGG-------TCGTC--CGGTTGTC---GTTGTCGTCGTCGTCA----TTATCAT---CATCATCATCAGC
gi|32 : AGCAGCAGCAGCAGCAT-------CAT--TATCCTCGAT--GT------T---ATTATC
gi|33 : GTCGTCGTCGTCGTCGTTGTTGTCATCATCATCAGCAACA--GCAGCAGCAGCAataaaattataattatcact
gi|4 : CAACAGAAGCAGTAGATATCTTCATCCGTCCAGTATT--ATATCCTTCTCGGGTCCCATTGACACCATCCTAG-CATGACTTTATATCACTTTATACTTACCATCTGTATCCATAT-ACCAACATCCTCATCACAGT------GNNNNNNNNNNNNNNNNNNNNNNNNNACAACAACAACAGCAGCAGAAGATATCTT-AATCAGTCCAGTATTATCTCCATCTGCAGTCCCATTTACACCATCTGAACATAACCGTATATCACTTTATACTTACCATCTGTATCCAT--ATACTAGCATTCTTATGACTGTGATCATCATCATCATCAACAATAACAGAAGTATATACCTTCATCCGTCCAGTATTAg
gi|4 : aAT----ACTTACCATCTGTA--TCCAT-------ATACTAGCATT--------------CTTATGACTGTGATCATCATCAT-----------CATCAACAATAACAGAAGTA--TA-TACCTTCATCCGTCCAGTATTATATCCATCTCGAGTCCCATTGACACCAtatccatctcgagtcccattgacacca
gi|5 : acaacagaagcagtagatatcttcatccgtccagtattatatccttctcgggtcccattgacaccatcctagcatgactttatatcactttatacttaccatctgtatccatataccaacatcctcatcacagtgnnnnnnnnnnnnnnnnnnnnnnnnnacaacaacaacagcagcagaagatatcttaatcagtccagtattatctccatctgcagtcccatttacaccatctgaacataaccgtatatcactttCACCA-TTACCATCATTT-TAATGACCATACTGATCATTCTCATCTTTACTGTCAGATGCTCT-A-CATAATCATCAGC--AG-CAGCAGTAACAGCAGCATTATNNNNNNNNNNNNNN-NNNNNNN-NNNN----NN-N-N-NNNNNNNNNNNNNN-N-NNNNNNN-NN--NNNNN---------N-TTGTCAGGAGCAGCAG-CAGCAG----C---ATGATCAACATCTTGA----TCAACAT---CATTATCATCATTATCATTATCA--CTGTTATGACCA-TAATGATCATTT-TCATCTTTACATC--TTGTC-----CCTGG--TTGAAATCTC-AATATC--ATCATCATTATCATCATCAT-----------CATCAGCAGCAGCAGTG-TAACCACCATCTTAATC
gi|5 : cattatcattatTCAG--GAGCAGCAGCAGCAGCATGATCAACATCTTGATCAACATC-ATTAT------CATC---ATTATCATTATCACTG-TTATGACCATAA--TGAT--CATTTTCATC-TTTACATCTTGTCCCTGGTTGAAAT-CTCAATATCATCATCATTATCATCATCATCATCAGCAGCAGCAGTGTAACCACCATCTTAATCATTATCattatcatca
gi|6 : cattatcattatcaccattaccatcattttaatgaccatactgatcattctcatctttactgtcagatgctctacataatcatcagcagcagcagtaacagcagcattatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnttgAACAGCTGCTTTCTATTATCAACATCATCACTAC--TTTATCTTTCTAGTCATCAGCATGATCTATTTTTATCAACAT---CATCATTACC---ACTATATCATCATC-ATC-ATCATTATCGTCCTCAT---AAGCAGCTGATTATGTGTAT--TTGTATTAGCTGCTATTAATTT--TGTT---C--ATAAACATCATCATCT------TCATTATGA-CTATATCA--TCAT-----CAT--T-GTCATCATCATCATCCTCCTCATTAGCAGCTG-AT-------TATG-TGTATTT------------GT---ATTAGCTGC---TATT-----AATT-TTGTTCATAAAC-----ATC-AT--CATC-ATCATTATGA-C-T--------AT---A-TC---ATCATCATTGTCATCATCATC-CTCCTCATatca
gi|7 : atctcaaccatcagcCAAAGTTAT-TGG----TATTGTTAT----GTC---ATCATAATTATCATGATTGACATCGTAATt
gi|7 : attctTATTGTTAT-GTCATCAT---AATTATC---ATGATTGACATC----GTAATGTCGT---A-ATCAT---TA----TC-A-TCGCTGGTTACATT--------ATCA-TA--TTCAT---------CATCACT----------G-C--TAA----C---ACCATCGTCATCGTAA----T-ATCATAGGCATCATCAgtcgtaatcattatcatcgctggttacattatcatattcatcatcactgctaacaccatcgtcatcgtaatatcataggcatcatcaaaattacagtgtacatcaacttagacaacagtgtcagatttattattaattgcattatcataagtaatgacatcgttatcatcgacatcatcaccaatatattcattatcgtcataataattagcatcgtcaataacatcg
gi|7 : attctcaaagttattggATTATCATCGCTGGT--T--ACAT------TAT---CATATTCA---TCA-TCACTGCTAACACCATCGTCATCGTAAT-------ATCATAGGCATCATC-AAAATTACAGTGTACATCAA-CTTAGACAAC-AGT-GTCAGAT---TTAT-TATTAATTG-CATTATCATAAGTAATGACATCGTTA-------TCA-T--CGA----C---ATCATCACCAATATAT----TCATTAT---CGTCATAATAATTAGCA--aaattacagtgtacatcaacttagacaacagtgtcagatttattattaattgcattatcataagtaatgacatcgttatcatcgacatcatcaccaatatattcattatcgtcataataattagcatcgtcaataacatcg
gi|8 : attctcaaagttattggtattgttatgtcatcataattatcatgattgacatcgtaatgtcgtaatcACAATTTAATTATGAAGATAGATACTGT--GAAAGAAACGTAAATGGCATTAT-TAA-AGAAAGCA-----TTTT-ATTGACACTCTTGACGAGA--AAAA----ATTAACTTACCTATTATCCAAGTCTTGGCTACCCCAACTTTAT------------CAATATTTGAATGACTTCTAACCCAG------GATCCGATTCTTTACTATCACACTCCATCATACATCTTTATCTACTGGCTTATTTCTATCTTCAGTTTCATCGATGTCATCCATAACATTACTTGtcgtcaataacatcg
gi|9 : CTTCTGT-TTCATCATCA--A-CAC---------CACCATTA-------TCA-T--CAA----CAATATCATCACCAACATCA----TTAACAA---CACCATTGTCAACAGCA--A
gi|9 : gTTA-TC--ATCAACAATATCATCACCAACATCATTAACA-ACACC--A--TTGT-----CAA--C-AGCAACAACAANNNNNNNNNNNNNNNNNNNNNNNN-------NNNN-NNNNNNN-NN--NNNNNNNNN---NNNNNNN-N---NNNN--NNNNNNN-NN----NNNNNN-----NNN-NN--NGCA-A-CA--AC------A-------ATTTCA-GC---ATCATTATCATCAACACCACC-ACCATCATC---ATCATcaacaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngcaacaacaatttcagcatcattatcatcaacaccaccaccatcatcatcataattttgtcaagtcttactaaatac
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|17 ): CACTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCCACCGTTATCATCATACCCCATCATCAGTGCTAT
Unaligned ( gi|30 ): TTGTCATTATTATCATTATTGTTATCAGTAATATCCTCTTTTTTTCCATCTCGCCCTCCTCCTCCT
Alignments
lowQualScore : 111111 22222 3333 11 2222222 22222222 11111111111111111 222222 11 2 22222222 6666666666666 1 1 11111 1 11 11 666666666666 555555555 222 22222222222 1111111 222222 111 1 1 111 111 11111 111111 222222222 111111111 1111 1111 11 333 2222 1 11 111 444444444 44444444444 1 11 1 11 1 11111 111 111 1 222 1 1111 222222 111 1 1 111 11111 1 11111 1 11 1 111111 11111 1111111 11 33333333333333333 111 111 2222222222222222222222 3333333333333333333333333 11111 33333333 22 11111 4444444 1111 11 111 222 1 2222 1 1 11 55555555555 11 22222 111 11 11 1 222222 222 11111 1 11 111 1 88888888888888888888 22222 11 111 222 1 88888888888888888888888888888888 1 1 222 1 11 77777777777777777777777
lowQualScore : 1 3 222222 1 33333 1 1 1 5555 11 1 8 5555555 4 1 8 0 99999999 1 77777777777777777 0 333333 1 0 0 11 6 6 0 00000000 7 6 6 9999999999999 2 6 0 0 0 6 1 3 0 6 0 44444 6 6 6 6 3 88 0 7 11 7 6 888888888888 1 6 777777777 0 333 1 9999999999 77777777777 9999999 888888 777 1 44 0 1 3 3 5 0 0 44 3 666 0 7 0 2 8 5 0 444 88888 1 2 0 222222 0 6 77 5 000000000 4 777777777 0000 888 3 1 1 0000 2 888 1 11 000 6 1111 0 0 33 2 3 3 444 2 444444444 0 3 0 1 77777777777 0 0 0 1 0 33 0 1 2 0 3 11 5 0 8888 0 6 3 22222 000 000 1 5 1 5 111 1 1 1 5 22 1 0 1 0 0 6 0000 1 888888 6 666 0 4 1 1 0 22 777 88888 6 2 1 44444 6 3 0 44 2 3 1 7 333333 5 1 6 1 2 0 5 66 66 11111 66 4 2 6 444 0 4444444 44 55555555555555555 5 555 111 5 5555555555555555555555 7777777777777777777777777 22222 11 5 9999 1 4 11111111 44 66666 3 1 1 0 0 6 3333333 8888 44 1 6 1 66 1 1 0 44 11 2 1 999 000 0 0 1 0000 2 1 7777 0 0 0 99 22222222222 1 1 33 1 2 00000 444 0 88 88 5 1 999999 111 1 1 1 77777 1 5 1 77 222 3 1 66666666666666666666 1 66666 1 88 999 1 1 2 22 111 1 1 22 1 5 1 1 66666666666666666666666666666666 1 5 5 1 22 1 1 1 2 22 1 1 1 111 5 88 77777777777777777777777 1 1 1 1
lowQualScore : . . ...... . ..... . . . .... .. . . ....... . . . . ........ . ................. . ...... . . . .. . . . ........ . . . ............. . . . . . . . . . . . ..... . . . . . .. . . .. . . ............ . . ......... . ... . .......... ........... ....... ...... ... . .. . . . . . . . .. . ... . . . . . . . ... ..... . . . ...... . . .. . ......... . ......... .... ... . . . .... . ... . .. ... . .... . . .. . . . ... . ......... . . . . ........... . . . . . .. . . . . . .. . . .... . . . ..... ... ... . . . . ... . . . . .. . . . . . . .... . ...... . ... . . . . . .. ... ..... . . . ..... . . . .. . . . . ...... . . . . . . . .. .. ..... .. . . . ... . ....... .. ................. . ... ... . ...................... ......................... ..... .. . .... . . ........ .. ..... . . . . . . ....... .... .. . . . .. . . . .. .. . . ... ... . . . .... . . .... . . . .. ........... . . .. . . ..... ... . .. .. . . ...... ... . . . ..... . . . .. ... . . .................... . ..... . .. ... . . . .. ... . . .. . . . . ................................ . . . . .. . . . . .. . . . ... . .. ....................... . . . .
lowQualScore : 0 2 444444 4 22222 0 4 4 8888 00 0 0 2222222 2 0 0 8 00000000 0 88888888888888888 8 000000 4 8 8 00 4 7 7 33333333 3 7 7 7777777777777 0 7 7 7 7 7 0 2 0 5 8 22222 7 7 7 7 3 33 7 3 00 3 7 333333333333 0 7 000000000 7 333 0 7777777777 66666666666 5555555 888888 555 2 55 0 0 8 8 0 8 0 00 2 666 8 6 4 8 0 4 4 000 00000 0 8 2 000000 2 7 99 0 000000000 2 666666666 6666 888 1 2 0 6666 2 888 0 00 333 7 2222 0 2 22 5 2 5 222 5 555555555 2 2 8 0 55555555555 2 2 2 2 0 88 0 0 0 8 2 88 5 2 0000 2 7 7 33333 000 000 0 0 7 5 000 0 0 0 5 00 0 7 0 7 7 7 8888 0 000000 5 222 0 2 2 2 0 55 555 55555 7 0 0 33333 7 3 7 33 0 7 0 3 000000 0 0 7 6 2 4 0 99 99 11111 11 4 8 8 888 2 4444444 11 88888888888888888 7 777 000 0 6666666666666666666666 8888888888888888888888888 55555 11 0 1111 0 3 00000000 33 77777 7 0 0 7 7 7 3333333 7777 77 0 7 4 00 4 4 8 66 00 2 0 555 555 2 0 0 5555 5 0 2222 0 0 2 88 55555555555 2 0 88 0 0 55555 000 2 33 33 0 0 000000 000 0 0 0 00000 0 0 0 55 333 3 0 00000000000000000000 0 00000 0 55 555 0 0 5 00 000 0 0 00 0 0 0 0 00000000000000000000000000000000 0 0 0 0 00 0 0 0 5 00 0 0 0 000 0 00 00000000000000000000000 0 0 0 0
consensus : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTCTGGNACATGGTTGACTTCTG--GA--TCGGCTT-CTAGGTTNACTTCTGGGACATGGTTGACTTCTGGA--GACAT--GGTTGATTTCTGGNACAT-G--TT-NACTTCCGGGTNGACTTCTG-GGACATA--------GCNGACTTCTAGGTAGATGCNTTAG--TTGATTTCTG------GGTCGACTTCTGGGAAATGGTTGACTTCCGAATTGACTTCTGGAATATATT--TGACTTT-AATTCTTTGATGCCGTATATAATATACAGTTAAGTTTTTAAACACACTGTTAAGACCATTTAAAACTACATA--------TCAG-AAAATACCAGTATTCTGTTTAGAGTTGTTGTTTCGCTACTATGTTAATGTCGGTACAATAACGTCGATTGGTATGTTTACAATCTCATATAGAGAGGCTAAAACAATTTAATTANAAAGATAAATA-TATCAGGAAGAATAGTCA--GACATTGTGTAACAGAAAACACAACATTTTGATT-ACACTC--GACGAAATCAAAATGAGATTAACTTACCTATTATCCAAATCTCGATTATCCCATCTTCAC------------CAACATGTAGATAATNTCTAGTCCAG------NA-CCGATTCTTCATCATCA---TCCATTACACATCTTCATCACCTGATTTATCTCNATCTTCAGTGTCATCGGTGTCATCCATAACATTACCTGATACTTCCACACACCAACTACCATCACTT-T--T--CCAT------CAT---CATCTTTATNATCA-ACGCTNTTATCATCGTCATCATCAATCACC--TATCATCGGCATCATCTGCAGTTTCATTG-ACACCATCCT---TAAC-A-T-GCCNGATACCTTCT-T-TTCATCG-CA--ATCA-T---------CATCGTTATC----G-C--CAA----C---ATCATCGTCATCGTNA----TCATCAT---CATCATCATCAGCAGCA--AACA--CTCTTGTGTCCAGTAAT----ACCT-CCATCTCCAGNTCCATTGACACCATCCTAGCATTAAA----C-AATACCTTATTATCNTTACCATCATCAT-----------CATCAGCAGCAGCAGTA-TA--TA-TATCTTNATCCGTCCAGTATTATCTCCATCTCGAGTTCCATTGACGCCATTCTTACAGTACTTTGATACAACGTTAT-CGT----TATCATCAT---CATC---ATNATCACCATCATCATCATCATCGTAATCATCTCATCCGTCCAGTGTTATTTCCATTTCAAGTTTCATTGGTGCCATTCTAACATTACCTTTTCCCACTTTATCCCTACCATCATTTTTATCGCCAACATGATCTTCANTGCAATCATCNTCACCANCAGCATACATCTTCATCCGTCCANNGTTATCTCCATCTCNAGTTTTATCGNCGCCGTTCTAACATC-GCCTTNTACCACC----TTATCGTTAC--TC-ATCGTTCTTGTCACCAACATCATC-ACTATAATCATCAT---CATCAGCAGC---A-TATATCTTCATCCATCCATNATTATC-TCC-CATCTCAAGTA-CCGTTGACGN-CATCCTTACATTACCCGATACCANCTTATTCTTA-CC--ATCAACANCATCATCACCAACATCATCATCA-CTACA--A--TCAT-----CAT--C-ATCATCATCAACAGCAGCAGCAGTAGCAGCAGCAT-------CATG-TATCTTC-AT--GCGTCTAGT---ATTATCT-C---CATC--TCCAGTT-TTATCGNC-----ATC-AT--TCTA-ACATCACC--TNAT-A-TC-----------ATCAT-----CATCATCATCATCGTC-ATCATCATC---GTCATCANCAGCAGCA----TAT-TCTTCATC-CATTA--AGTATTATCTCCATNTCCAGTCCNATCGACACCGTCATAACATTACCTTAT-------ATCACTT-NA-ACTTACCATCGNCATCNTTACCACCAACGTCATCGCCACCGTCGTCGTCGTCGTCATCGCCAGCGNCA--GCAGCAGCANCAT--ACATCTTCACCGATCCACCATTATC-TCCNTNTC-CAGCNTCATTGCCACCATC-TTAAC-ATTACCT-ATACCA-GCTTATACT-TATCAACANCAT--CANCACCGC--TACTCATCATCATCATCAG--CAGCAGCAGCAGCAGCATTAT--ATATCTTCATC--CATCCANTATAACCTCCATCTCTANTNCCATTGNCACCGATTNTGACCATNACCTGATACCATCTTAATC-TTANCATCTTGTCC---GT----AT-C-CAA---CATCATCATNATCATCATCAGCAGCAGCAGCAGCAGCGTAACCACCATCTTNACCATTATCCAGTATTTTCTCCATCTCCAGTCCAATTGACCCAATTCTAAATTTACCTGATACCACCCAATACTTACAACCATCATCCTTATCACCAACATCATCATTAATGTTATTACCATCAACAGCAGCAGCATATATCTTCACCCGTCCAGTATTTTNTNTCCNTCTCCGGTCCNNTTGACACCATCCTAGACATNACCTNATATCACCTTATACTTACCATCNNCATCCNTATCACCNACATCCTCATCACNGTT-----GNNNNNNNNNNNNNNNNNNNNNNNNNACAACAACAACAGCAGCAGAANATATCTTCAACCAGTCCAGTATNATCTCNNTCTNCAGTCCCANTNACGCCATCCGAACATAACCNNACACNANCTTATACTTACCANCTGTATCCATCAACACTGGCATTCTTATGACTGTGATCATCATCATCATCAGCAGTAGCAGNAGCATATACNTTCATNCGTCNAGTATTA
Reference ( family-1427 ) : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTCTGGNACATGGTTGACTTCTG--GA--TCGGCTT-CTAGGTTNACTTCTGGGACATGGTTGACTTCTGGA--GACAT--GGTTGATTTCTGGNACAT-G--TT-NACTTCCGGGTNGACTTCTG-GGACATA--------GCNGACTTCTAGGTAGATGCNTTAG--TTGATTTCTG------GGTCGACTTCTGGGAAATGGTTGACTTCCGAATTGACTTCTGGAATATATT--TGACTTT-AATTCTTTGATGCCGTATATAATATACAGTTAAGTTTTTAAACACACTGTTAAGACCATTTAAAACTACATA--------TCAG-AAAATACCAGTATTCTGTTTAGAGTTGTTGTTTCGCTACTATGTTAATGTCGGTACAATAACGTCGATTGGTATGTTTACAATCTCATATAGAGAGGCTAAAACAATTTAATTANAAAGATAAATA-TATCAGGAAGAATAGTCA--GACATTGTGTAACAGAAAACACAACATTTTGATT-ACACTC--GACGAAATCAAAATGAGATTAACTTACCTATTATCCAAATCTCGATTATCCCATCTTCAC------------CAACATGTAGATAATNTCTAGTCCAG------NA-CCGATTCTTCATCATCA---TCCATTACACATCTTCATCACCTGATTTATCTCNATCTTCAGTGTCATCGGTGTCATCCATAACATTACCTGATACTTCCACACACCAACTACCATCACTT-T--T--CCAT------CAT---CATCTTTACGATCA-ACGCTNTTATCATCATCATCATCAATCACC--TATCATCGGCATCATCTGCAGTTTCATTG-ACACCATCCT---TAAC-A-T-GCCNGATACCTTCT-T-TTCATCG-CA--ATCA-T---------CATCGTTATC----G-C--CAA----C---ATCATCGTCATCGTNA----TCATCAT---CATCATCATCAGCAGCA--AACA--CTCTTGTGTCCAGTAAT----ACCT-CCATCTCCAGNTCCATTGACACCATCCTAGCATTAAA----C-AATACCTTATTATCNTTACCATCATCAT-----------CATCAGCAGCAGCAGTA-TA--TA-TATCTTNATCCGTCCAGTATTATCTCCATCTCGAGTTCCATTGACGCCATTCTTACAGTACTTTGATACAACGTTAT-CGT----TATCATCAT---CATC---ATNATCACCATCATCATCGTCATCGTAATCATCTCATCCGTCCAGTGTTATTTCCATTTCAAGTTTCATTGGTGCCATTCTAACATTACCTTTTCCCACTTTATCCCTACCATCATTTTTATCGCCAACATGATCTTCANTGCAATCATCNTCACCANCAGCATACATCTTCATCCGTCCANNGTTATCTCCATCTCNAGTTTTATCGNCGCCGTTCTAACATC-GCCTTNTACCACC----TTATCGTTAC--TC-ATCGTTCTTGTCACCAACATCATC-ACTATAATCATCAT---CATCAGCAGC---A-TATATCTTCATCCATCCATNATTATC-TCC-CATCTCAAGTA-CCGTTGACGN-CATCCTTACATTACCCGATACCANCTTATTCTTA-CC--ATCAACANCATCATCACCAACATCATCATCA-CTACA--A--TCAT-----CAT--C-ATCATCATCAACAGCAGCAGCAGTAGCAGCAGCAT-------CATG-TATCTTC-AT--GCGTCTAGT---ATTATCT-C---CATC--TCCAGTT-TTATCGAC-----ATC-AT--TCTA-ACATTACC--TNAT-A-TC-----------ATCAT-----CATCATCATCATCGTC-ATCATCATC---GTCATCANCAGCAGCA----TAT-TCTTCATC-CATTA--AGTATTATCTCCATNTCCAGTCCNATCGACACCGTCATAACATTACCTTAT-------ATCACTT-NA-ACTTACCATCGNCATCNTTACCACCAACGTCATCGCCACCGTCGTCGTCGTCGTCATCGCCAGCGNCA--GCAGCAGCANCAT--ACATCTTCACCGATCCACCATTATC-TCCNTNTC-CAGCNTCATTGCCACCATC-TTAAC-ATTACCT-ATACCA-GCTTATACT-TATCAACANCAT--CANCACCGC--TACTCATCATCATCATCAG--CAGCAGCAGCAGCAGCATTAT--ATATCTTCATC--CATCCANTATAACCTCCATCTCTANTNCCATTGNCACCGATTNTGACCATNACCTGATACCATCTTAATC-TTANCATCTTGTCC---GT----AT-C-CAA---CATCATCATNATCATCATCAGCAGCAGCAGCAGCAGCGTAACCACCATCTTNACCATTATCCAGTATTTTCTCCATCTCCAGTCCAATTGACCCAATTCTAAATTTACCTGATACCACCCAATACTTACAACCATCATCCTTATCACCAACATCATCATTAATGTTATTACCATCAACAGCAGCAGCATATATCTTCACCCGTCCAGTATTTTNTNTCCNTCTCCGGTCCNNTTGACACCATCCTAGACATNACCTNATATCACCTTATACTTACCATCNNCATCCNTATCACCNACATCCTCATCACNGTT-----GNNNNNNNNNNNNNNNNNNNNNNNNNACAACAACAACAGCAGCAGAANATATCTTCAACCAGTCCAGTATNATCTCNNTCTNCAGTCCCANTNACGCCATCCGAACATAACCNNACACNANCTTATACTTACCANCTGTATCCATCAACACTGGCATTCTTATGACTGTGATCATCATCATCATCAGCAGTAGCAGNAGCATATACNTTCATNCGTCNAGTATTA
gi|1 : TTCTGAGGAC------------CGCATCTCCACGTACATGCGTAAAAATTG--TTCTGAGATATGGTTGACCTTT----AA--GTCGACTTCTGTGTTTACTTCTGGAACATGGT--TGATTT
gi|1 : tgtTTCTGAGATATGGTTGACCTTTA--AG--TCGACTT-CTGTGTTTACTTCTGGAACATGGTTGATTTCTGAA---ACAT--GGTTGACTTCTGGAACAT-G--TT-TTTTTCTGGATAGACTTCTG-G-ACATA--------GCAGACTTCTAGATAGATGCCTTAG--TTGATTTCTT------GGTCGATTTCAGGGAAGTGGTTGACTTTCAAATTGACTTCTGGAATATATT--TGACTTTCAATTCTTTGATACCATATATAATATACAAT---GTTT--AAACACACTGTTAAGACCATTTAAAACTACATAATATTTTATCAGTAAAATACCTGTATTCTTTTTAAAGTTGTTGTTTCACTACTATGTTAATGTCGGTACAATTATGTTGACTGGTATGCTTACAATCTCATATAGAGAGGCTAAAACAATTTAATTAGAAAGATAAATA-TATCAGGAAGAATAGTCA--GACATTGTGTAACAGAAAACACAACATTTTGATT-ACATTC--GACAAAATCCTATTAAGATTAACTTA----TTATCCAAATCTCGATTATCCCATCTTCACCAACAGCTTCACCAACATGTAGATAATGTCCAGTCCAG------CAACCAATTCTTCATCACCA---TCCATTACACATCTTCATCACCTGATTTATCTCAATCTTCAGTGTCATCGGTGTCATCCATAACATTACCTGATACTTCCACACACTAACTACCATCACTT-T--T--CCAT------CAT---CATCCTTATGATCA-ACACTTTTATCATCATCATCATCAATCACC--TATCATCAGTATCATCTGCAGTTTCATTG-ACACCATCCT---TAACAA-T-GCCCGATACCTTCT-T-TTCATTG-CA--ATCA-T---------CATCCTTATC----A-C--CAA----C---ATCATCATCACTGTAA----TCATCAT---CATCATCATCAGCAGCA--AACA---TCTTGTGTCCAGTAAT----ACCT-CCATCTCCAGCTCCATTGACACCATCCTAGCATTAAA----CAAATACCTTATTATCCTTACAATCATCAT-----------CATCAGTAGCAGCAGTA-TA--TA-TATCTTGATCCGTCCAGTATTATCCCCATCTCCAGTTCCATTGACACC-TTCTTACAGTAC-TTGATACAACGTTAT-CCT----TACCATCAT---CATT---ATGATCACCAACATCATCATCACTGTAATCATCTCATCCGTCCAGTGTTATTTCCATTTCAAGTTTCATTGGTGCCATTCTAACATTACC-TTTCCCACTTTATCCCTACCATCATTTTTATCGCCAACATGA---TCACTGCAATCATCATCACCATCAGTATACATCTTCATCCGTCCATGGTTATCTCCAACTCAAGTATTATTGACACCATTCTAACATT-TCCCGGTACCACC----TTATTCTTAC--TC-ATCATTCTTATCACCAACATCTTC-ACTGCAATCATCAT---CATCAGCAGC---A-TGTATCTTCATGCGTCTAGTATTATC-T-C-CATCTCCAATT-CTATTGACAA-CAACCTAACATTACCAGATACCAGCTTATTCTTA-CC--ATCAACAACTTTATCGCCAACATCATCATCA-CTGCA--A--TCAT-----CAT--C-ATCATTATTAGCAGCAGCAGCAGTAGCAGAAGCAG-------CATG-TATCTTT-AT--GTGTCTAGT---ATTATCT-C---CATC--TCCAGTT-TTATTGAC-----AGC-AT--CCTA-ACATTACC--TGAT-A-CC-----------ACCTT-----CATCACCATCACTGTT-ATCACCATC---ATCATCATCAGCAGCA----TATCTCTTCACC-TATTA--AGTACTATCTTCATCTCCAGTTCACTTGACACCAGCCTAACATTACCTGAT-------ACCACCTAAA-ACTTACCATCATCATCTTTACCACCAACACCATCACCACTGTTATCTTCATCATCATCACCAGCTTCA--GCAGCAGCAGCAT--ATATCTTCACCTATCCAGTATTATC-TCCTTCTC-CAGTCTCATTGACACCATC-CTAAC-ATTACCTGATACCA-GCTTATACT-TACCAACATCAT--CAACACTGTGATACTCATCACCATCATCAG--CAGCAGCAGCAGCAGCATTAT--ATATCTTCACC--TATCCAGTATAACCTCCATCTCTAGTCCCATTGAC-CCAATTCTAA-CATTACCTAATACCACCTTAAAC-TTACCATCTTGTCC---AT----ATAC-CAA---CATCATTATCATCATCATCAGGAGCAGCAGCAGCAGCATA-----TATCTTTACC--TATCCAGTATTTTCTCCATCTCCAGTCCAATTGACCCAATTCTAAATTTACCTGATACCACCCAATACTTACAACCATCATCCTTATCACCAACATCATCATTAATGTTATTATCATCAACAGCAGCAGCATATATCTTCACTTATCCAGTATTTTTTCTCCATCTCCAGTCCATTTGACACCATTCT-GACATTACCTGATATCACCTTATACTTACCATCATCATCCTTATCATCTACATCCTCATCACTGTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTATATCTTCAACTA-TCCAGTATAATCTCATTCTCCAGTCTCAATGATGCCATCCTAACATAACCTGACACAAGCTTATACTTACCAAC---AT-CATCAACACTG-----------------------ATCATCATCAGCAGTAGCAGCAGCATATATATTCATGTATCGAGTATTActgaaacatggttgacttctggaacatgtttttttctggatagacttctggacatagcagacttctagatagatgccttagttgatttcttggtcgatttcagggaagtggttgactttcaaattgacttctggaatatatttgactttcaattctttgataccatatataatatacaatgtttaaacacactgttaagaccatttaaaactacataatattttatcagtaaaatacctgtattctttttaaagttgttgtttcactactatgttaatgtcggtacaattatgttgactggtatgcttacaatctcatatagagaggctaaaacaatttaattagaaagataaatatatcaggaagaatagtcagacattgtgtaacagaaaacacaacattttgattacattcgacaaaatcctattaagattaacttattatccaaatctcgattatcccatcttcaccaacagcttcaccaacatgtagataatgtccagtccagcaaccaattcttcatcaccatccattacacatcttcatcacctgatttatctcaatcttcagtgtcatcggtgtcatccataacattacctgatacttccacacactaactaccatcacttttccatcatcatccttatgatcaacacttttatcatcatcatcatcaatcacctatcatcagtatcatctgcagtttcattgacaccatccttaacaatgcccgataccttcttttcattgcaatcatcatccttatcaccaacatcatcatcactgtaatcatcatcatcatcatcagcagcaaacatcttgtgtccagtaatacctccatctccagctccattgacaccatcctagcattaaacaaataccttattatccttacaatcatcatcatcagtagcagcagtatatatatcttgatccgtccagtattatccccatctccagttccattgacaccttcttacagtacttgatacaacgttatccttaccatcatcattatgatcaccaacatcatcatcactgtaatcatctcatccgtccagtgttatttccatttcaagtttcattggtgccattctaacattacctttcccactttatccctaccatcatttttatcgccaacatgatcactgcaatcatcatcaccatcagtatacatcttcatccgtccatggttatctccaactcaagtattattgacaccattctaacatttcccggtaccaccttattcttactcatcattcttatcaccaacatcttcactgcaatcatcatcatcagcagcatgtatcttcatgcgtctagtattatctccatctccaattctattgacaacaacctaacattaccagataccagcttattcttaccatcaacaactttatcgccaacatcatcatcactgcaatcatcatcatcattattagcagcagcagcagtagcagaagcagcatgtatctttatgtgtctagtattatctccatctccagttttattgacagcatcctaacattacctgataccaccttcatcaccatcactgttatcaccatcatcatcatcagcagcatatctcttcacctattaagtactatcttcatctccagttcacttgacaccagcctaacattacctgataccacctaaaacttaccatcatcatctttaccaccaacaccatcaccactgttatcttcatcatcatcaccagcttcagcagcagcagcatatatcttcacctatccagtattatctccttctccagtctcattgacaccatcctaacattacctgataccagcttatacttaccaacatcatcaacactgtgatactcatcaccatcatcagcagcagcagcagcagcattatatatcttcacctatccagtataacctccatctctagtcccattgacccaattctaacattacctaataccaccttaaacttaccatcttgtccatataccaacatcattatcatcatcatcaggagcagcagcagcagcatatatctttacctatccagtattttctccatctccagtccaattgacccaattctaaatttacctgataccacccaatacttacaaccatcatccttatcaccaacatcatcattaatgttattatcatcaacagcagcagcatatatcttcacttatccagtattttttctccatctccagtccatttgacaccattctgacattacctgatatcaccttatacttaccatcatcatccttatcatctacatcctcatcactgttnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntatatcttcaactatccagtataatctcattctccagtctcaatgatgccatcctaacataacctgacacaagcttatacttaccaacatcatcaacactgatcatcatcagcagtagcagcagcatatatattcatgtatcgagtatta
gi|10 : tgtttctgaggaccgcatctccacgtacatgcgtaaaaattgATCGACATCGT-ATAACAATACTTTATCGACATAGTCATTG-CA-AACTATTATCGACATCGTCACTGCCAATGCCATTGCCACCGTTTTCGACATCGTAATTGTCATCGTCATTGCTG--ACGTTATTGACATTTTCATTGA--CACCATTATC-TCCAT-------CGTTATTGCCACCGTTATTGAT-ATTGTCA-ATATCA---TTG---T-TATCGACAGCGT--CATTGCCAT--T-TTCAT
gi|11 : ttTCATCATCATCGTCGTTGTCGTCGTCGCCGCC-GNNNNN--NNNNNNNNNNNNN--NNNNNNNNNNNNNNNCATTATTGTCATATTTATCACAGCATCATAATCATCATT-TTAAT-ATTAACT-ATACCGTGATCATA----ATCAATATCATACCATTACCAC---AGTCATCATCATTATCGGTATAGCAGCAACATCAATATTAT--ATAGCAGCATC--t
gi|12 : aCATTGTTGATTTCTT--GA--TTAACTA-CTAGGCTGACATCTTAGATATGGTTGACTTCTGGGCTGGCATCTGATATATTGTTGGTTTAT-GGTTT-TACTCCCGGGTTGACTACTA-GGATATGACTTAGAGGCTGACTTCT-GGTA----CATTA---TTGATTTCTG------AAACAACTTCTGGGAAATGGTTGACTTCTGGGCTGATATCTGG--TACATTGCTGATTTagaagacac
gi|13 : AACATCATCATCATCTACA--AATTCATGTTACCTT--CTAACATCATCTACATCATCAGCATTATATTCAACAT-------CATGATATCTTC-CA--ACATCTA-T---ATCATCA-CTATCATC--TTCAATT-TCAT-GAT-----ATC--T--TCTA-ATATCAACA-TTATCA-TC-----------TTCAA-----CATCATGATAATCTTCCAACATCATCTAAATCATCACCATCA-----------TCTTCA
gi|14 : ccttgCAACAACATCAACACCACTATCAAC-----CATCAGCAATAGCACCA--GCAGCAGCACCAC---CACCGCCACCA--CCACCGTTACC-TCCAAGAC-CACCCTCA---CCACAATC-TCAACCACCACC----ACCA-AC--A-ACAATAACAACAACAT--CAACACCAC--TACCAACCATCATCAGCAG--CAGCAGTACCAGCAGCaca
gi|15 : TCATCA-TTACA--A--CC-------CATAGC-TTCATCATCAACAGCAGCATCAATAGCATTCTCAT-------CAT--CATCAAC-ATAAGTGGC-AGTGACATTATTT-CA--CACC--ATCAG-------CAGC-----ATCAAT--TC----CATTGTA--TAA--A-TC-----------ACCAC-----CACCATCATCA--GTC-ATCATCATT---GTCATCA
gi|16 : tT-----CAT--C-ATCATTATCAGCAGCAGCA
gi|16 : TCATCATC---ATTATCAGCAGCAGCA--------TCTTTAT--CATTA--CTTTTTATCtctttatcattactttttatcattatcattattatttttgttatcattatcattaccatgatgatggtgatggtgatggtgatgatcatgatgatacagtacgattattataa
gi|16 : TCA-T---------CATCATTATC----A-G--CAG----C---AGCATCTTTATCATTACTTTTTATCAT---TATCATTATTAattatcattattatttttgttatcattatcattaccatgatgatggtgatggtgatggtgatgatcatgatgatacagtacgattattataa
gi|16 : AT-CGTACTGTATCATCATGATCATC---ACCATCACCATCACCATCATCATGGTAATGATtttttgttatcattatcattaccatgatgatggtgatggtgatggtgatgatcatgatgatacagtacgattattataa
gi|18 : tcatcatcattatcagcagcagcatctttatcattactttttatcattatcattattatttttgttatcattGTTGTTATCATC-----AGT-ATAATC-A-ATATTA----TAAT-T-TC-------------TAT-----CATCATAACCATGATC-ATCATTATT---GTCATCATCAGCA-----------TCCTCAT--CATTAATAGTATTATtattataa
gi|19 : ggctgctaaatttaatatcATCGCTATCACTAGCTTTTTCGTCAACGGT--AGCATC-AT-TTACATCA------TTATTGTTA---TC-GTCGTTGTCGGCGTCATCATCATC-ATCAAAATCATCAT---CATCAGCAGC---A-tatt
gi|2 : catcaccCATGTTTG-CTTCTG--GAACTTGGTT-----GGTTAACTTCTGGAACATGGTTGAATTCTGGA---ACAT--GGTTGACTTCTGAAACATAG--TT-GACTTCTGGATAGACTTATT-GGACATA--------GCAGACTTCAAGGTAGATGCCTAAG--TTGATTTATA------GGTCGATTTCAGGGAAATAGTTGACTTTCAAATTGACTTCTGGAATATATT--TGACTTTGAATTCTTTGATGCCATATATAATATA----TAA-TGTTTGAACACACTGTTAAGACCATTTAAAA-----------------------ATACCAGTATTCTGTTTAGAGTTGTTGTTTTGCTACTATGTTAATGTCAGTAAAATAATGTCAATTGGTATGTTTACAATCTCATATAGAAAGGCTAAAACAATTCAATTAGAAAGATAAATA-TATCAGGAAGTATAGTCG--GACATTGTGTAACAGAAAACACAACATTTTGATT-ACACTC--ATCAAAATCAAAATGAGA-----TTACCTATTATCGAAATCTCGATTATCCCATCTTCAC------------CAACATGTAGATAATAT-TAGTCCAGTCCTGCAA-CCAATTCTTCATCATCA---TCCATTACACATCTTCATCACCTGATATATCTCCATCTTCAGTGTCATCGGTGTCATCCATAAC----------ACTT----------ACTACCATCACAT-T--T--CCAT------CAT---CATCATTATGATCA-ACACTTTTATCATCAT-A--ATCAATCACC--TATCATCAGTATCATCTGCAGTTTCATTG-ACACCATCCT---TAAC-ATT-ACCCGATACCTTCT-T-ATCATTA-CA--ATCA-T---------TATCCTTAGC----G-C--CAA----C---ATCATCATCACTGTAA----TCATCAT---CATCATCAGCAGCAGCA--AACATCTTCTTGTGTCCAGTAAT----ACCT-CCATCTCCAGTTCCATTGACACCATCCTAGCATTACC----T-AATACCTTTTTATCCTTACCATCATCATTTTATCACCAACATTATCATCATTAGCA-TA--TA-TATCTTTATCCATCCAGTATTATCTCCATCTCGAGTTCCATTGATGCTATTCTTACAGTAC-TTGATACAACGTTAT-CCT----TACCATCAT---CATT---CTGATCACCAACATCATCTTCAATGTAATCATCTCATCCGTCCAGTGTTATTTCCATTTCAAGTTTCATTGGTGCCATTCTAACATTACCTTTTCCCACTTTATCCCTACCATCATTTTTATCACCAACATGATCTTCAATGTAATCATCCTCATCAGCAGCATACATC-TCATCTGTCCAGTATTATTTCCATTTCCAGTTTCATTGGTGCCATTCTAACATT-GCCTTTTACCACT----ATATCCTTACCATT-ATCATTCTTATCACCAACATCATC-ACTATAATCATCATCACCATCAGCAGCAGTA-TACATCTTCATCCATCCATGATTATC-TCC-CAACTCAAGTA-TCGTTGACGC-CATTCTTACATTACCCAATACCACCTTATTCTTA-GC--AT---TATCATCATCACCAACATAG--A-CA-CTGCA--A--TCAT-----CAT--C-AT---------CAGCAG-------------------------CATG-TATCTTC-AT--GCATCTTGT---ATTATGT-C---CATC--TCCAGTT-TTATTGACCGTATACC-AC--TTTATAC-TTACCATCTGT-A-TCCATATACCAAAATCCT-----CATCACTGTGATCATC-ATCATCATC---ATCATCAACAGCAGCAGCAGTATATCTTCATC-CATCC--AGTTTTATCACCATGTCCAGTCCCATTGACACCATCATAGCATTACCGTAT-------ATCACTT-TATACTTACCATCTGTATCCATA-TACCAACATCat
gi|20 : acactccttacctgaatctatacgttggcaatcagtggatcccgtatgtaaaactttcgaaggactgtgcttctgtttctgaggaccgtCCA-GCATCACCA-TCAT-AATA-----------ATCAT-----CATCATCATAATCGTT-GTCGTCGTC---GTAATGAACAGCCGCA----TAT-T-TTCAT----TTA--TATATTAACT
gi|21 : TTCTGGCACATGGTAGACTTCAG--AA--TTGGCAT------TTTATTTCTGTCACATGGTAGACTTCAGTATCGGCAT----TTCATTTCTGGCACAT-G--GTAGACTTCgatatatgattcagttacat
gi|22 : tgtttaatGTTCAATTTGCATTATGTTTAC--TATTTGAATAT----TCATTCGT-----ATCATCAT---CATC---ATCATCATCATCGACATTGTCTTCATAATCATCTC
gi|23 : atgtTATTACCATCATCAGCAGCAGCATATcatgag
gi|23 : ATTACC---ATCATCAGCAGCAGCA----TAT-TTATCATTGCATT-------TTATCttatcattgcattttatcattattataactgttgttattactatcattataatcattgttatcgttat
gi|24 : tCATCAGCATTAGCATTATCA-CAATC--A--TCAT-----CAT--C-ATCGATATCAACAGCAGCAGCA-TAGC--CACCAC-------CACA-T-TCTAC-Aattattataactgttgttattactatcattataatcattgttatcgttat
gi|25 : AGAAGTAGTAGTAGTAGCATGTGTTGTCAT--TAACTTC-AT-----TATGGT-----CATTT-T---CATTATTCCATTT-TTATCGCC-----ATT-AT--TGT---CATTACC--acatcaacagcaga
gi|26 : TTCTTAACCTAATCAATACAATCATCAACACCATCACAATCA-CTATA--A--CCAA-----CAT--C-AGCATTATCATCAGCAGCAGCAACAGCAGAAGatc
gi|27 : tCATTTTT----TGCTTTTAT-TATCATTAT-CAG----CATCATCAT---CATCATAATAATCACCATCATCATAATCACC
gi|27 : TTAT-CAT----TATCAGCAT---CATC---ATCATCATAATAATCACCATCATCATAATCACC
gi|28 : cattttttgcttttaATAC-ATCATAATCATTATGATCTTGATC---GT----G-----------ATAATCACAATCATCATCAGCAGCAACAGCAGCA
gi|29 : T----TATCATTAT---CATC---ATGCTCAGCATCATCACTATCATGAAAATCATTTta
gi|3 : ttaTTCTGAGGA--TCGTCTTTCTAGGTTGATCTCTGGGACATGGTTGATCTCTGG---GACAT--GGTTGATTTCTGGGACAT-G--------------GTTGACTTCTG-GGATACA--------GCCGACTTCT-----------TT-G--TTGACATCTG------AGTCAACTTCTGGGACATGGTTGACTTCTGAATTAACTACTGGAATATATC--TGA---------------TGCCGTATAAAATATACAGTTAAGTTTTTAAA---ACTGTTAAGACCAATTAAAACTACATA--------TCAGGAAAATACCAGAATACTGTTTA-AGTT-TTGTTTTGCTACTATGTTAGTGTCGGTACAATAACGCCAATAAGTATGTTTGTAATCTTATGTAGAGA--CTAGAGCAATTTAATTACAAAGATAA--A-TATTATGAAGAATGG--A--GATATTattaatattaatatc
gi|31 : catactccttacctggatctatacctggaactataggtatgtggccaatcagtggatcccaaatgtaaagctttcaaatgaatggacttctgt--ATCG-T---------CGTCGTGGTC----GTC--CGGTTGTC---GTTGTCGTCGTCGTCA----TTATCAT---CATCATCATCAGC
gi|32 : AGCAGCAGCAGCAGCAT-------CAT--TATCCTCGAT--GT------T---ATTATC
gi|33 : GTCGTCGTCGTCGTCGTTGTTGTCATCATCATCAGCAACA--GCAGCAGCAGCAataaaattataattatcact
gi|4 : CAACAGAAGCAGTAGATATCTTCATCCGTCCAGTATT--ATATCCTTCTCGGGTCCCATTGACACCATCCTAG-CATGACTTTATATCACTTTATACTTACCATCTGTATCCATAT-ACCAACATCCTCATCACAGT------GNNNNNNNNNNNNNNNNNNNNNNNNNACAACAACAACAGCAGCAGAAGATATCTT-AATCAGTCCAGTATTATCTCCATCTGCAGTCCCATTTACACCATCTGAACATAACCGTATATCACTTTATACTTACCATCTGTATCCAT--ATACTAGCATTCTTATGACTGTGATCATCATCATCATCAACAATAACAGAAGTATATACCTTCATCCGTCCAGTATTAg
gi|4 : aAT----ACTTACCATCTGTA--TCCAT-------ATACTAGCATT--------------CTTATGACTGTGATCATCATCAT-----------CATCAACAATAACAGAAGTA--TA-TACCTTCATCCGTCCAGTATTATATCCATCTCGAGTCCCATTGACACCAtatccatctcgagtcccattgacacca
gi|5 : acaacagaagcagtagatatcttcatccgtccagtattatatccttctcgggtcccattgacaccatcctagcatgactttatatcactttatacttaccatctgtatccatataccaacatcctcatcacagtgnnnnnnnnnnnnnnnnnnnnnnnnnacaacaacaacagcagcagaagatatcttaatcagtccagtattatctccatctgcagtcccatttacaccatctgaacataaccgtatatcactttCACCA-TTACCATCATTT-TAATGACCATACTGATCATTCTCATCTTTACTGTCAGATGCTCT-A-CATAATCATCAGCAG-CAGCAGTAACAGCAGCATTATNNNNNNNNNNNNNN-NNNNNNNNNN---NNNN-N-N-NNNNNNNNNNNNNN-N-NNNNNNN-NN--NNNNNT---------TGTCAGGAGCAGCAG-CAGCAG----C---ATGATCAACATCTTGA----TCAACAT---CATTATCATCATTATCATTATCA--CTGTTATGACCA-TAATGATCATTT-TCATCTTTACATC--TTGTC-----CCTGG--TTGAAATCTC-AATATC--ATCATCATTATCATCATCAT-----------CATCAGCAGCAGCAGTG-TAACCACCATCTTAATC
gi|5 : cattatcattatTCAG--GAGCAGCAGCAGCAGCATGATCAACATCTTGATCAACAT-CATTAT------CATC---ATTATCATTATCACTG-TTATGACCATAA--TGAT--CATTTTCATC-TTTACATCTTGTCCCTGGTTGAAAT-CTCAATATCATCATCATTATCATCATCATCATCAGCAGCAGCAGTGTAACCACCATCTTAATCATTATCattatcatca
gi|6 : cattatcattatcaccattaccatcattttaatgaccatactgatcattctcatctttactgtcagatgctctacataatcatcagcagcagcagtaacagcagcattatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnttgAACAGCTGCTTTCTATTATCAACATCATCACTAC--TTTATCTTTCTAGTCATCAGCATGATCTATTTTTATCAACAT---CATCATTACC---ACTATATCATCATC-ATC-ATCATTATCGTCCTCAT---AAGCAGCTGATTATGTGTAT--TTGTATTAGCTGCTATTAATTT--TGTT---C--ATAAACATCATCATCT------TCATTATGA-CTATATCA--TCAT-----CAT--T-GTCATCATCATCATCCTCCTCATTAGCAGCTG-AT-------TATG-TGTATTT------------GT---ATTAGCTGC---TATT-----AATT-TTGT----------TC-AT--A--A-ACATCA----TCATCA-TC-----------ATTATGACTATATCATCATCATTGTC-ATCATCATC---CTCCTCAatca
gi|7 : atctcaaccatcagcTATTGTTAT-GTCATCAT-AATTATC---ATGATTGACATC----GTAATGTCGT-----A--ATCAT---TATC-A-TCGCTGGTTACATT--------ATCA-TA--TTCA-T---------CATCACT-------G-C--TAA----C---ACCATCGTCATCGTAA----T-ATCATAGGCATCATCAtt
gi|7 : attctcaaagttattggATTATCATCGCTGGT--T--ACAT------TAT---CATATTCATCATCA-CTGCTAACACCATCGTCATCGT-AAT-------ATCATAGGCATCATC-AAAATTACAGTGTACATCAACTTAGACAAC-AGT-GTCAGAT---TTAT-TATTAATTG-CATTATCA-TAAGTAATGACATCGTTATC----A-T--CGA----C---ATCATCACCAATATAT----TCATTAT---CGTCATAATAATTAGCA--aaattacagtgtacatcaacttagacaacagtgtcagatttattattaattgcattatcataagtaatgacatcgttatcatcgacatcatcaccaatatattcattatcgtcataataattagcatcgtcaataacatcg
gi|8 : attctcaaagttattggtattgttatgtcatcataattatcatgattgacatcgtaatgtcgtaatcACAATTTAATTATGAAGATAGATACTGT--GAAAGAAACGTAAATGGCATTAT-TAA-AGAAAGCA-----TTTT-ATTGACACTCTTGACGAGA--AAAA----ATTAACTTACCTATTATCCAAGTCTTGGCTACCCCAACTTTAT------------CAATATTTGAATGACTTCTAACCCAG------GATCCGATTCTTTACTATCACACTCCATCATACATCTTTATCTACTGGCTTATTTCTATCTTCAGTTTCATCGATGTCATCCATAACATTACTTGtcgtcaataacatcg
gi|9 : CTTCTGT-TTCATCATCA--A-CA-C---------CACCATTATC----A-T--CAA----CAATATCATCACCAACATCA----TTAACAA---CACCATTGTCAACAGCA--A
gi|9 : gTTA-TC--ATCAACAATATCATCACCAACATCATTAACA-ACACC--A--TTGT-----CAA--C-AGCAACAACAANNNNNNNNNNNNNNNNNNNNNNNN-------NNNN-NNNNNNN-NN--NNNNNNNNN---NNNNNNN-N---NNNN--NNNNNNN-NNNNNNNN-----NNN-NN--NGCA-ACAACAAT--TT-C-A-GC-----------ATCAT-----TATCATCAACACCACC-ACCATCATC---ATCATcaacaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngcaacaacaatttcagcatcattatcatcaacaccaccaccatcatcatcataattttgtcaagtcttactaaatac
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|17 ): CACTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCCACCGTTATCATCATACCCCATCATCAGTGCTAT
Unaligned ( gi|30 ): TTGTCATTATTATCATTATTGTTATCAGTAATATCCTCTTTTTTTCCATCTCGCCCTCCTCCTCCT
Alignments
lowQualScore : 111111 22222 3333 11 2222222 22222222 11111111111111111 222222 11 2 22222222 6666666666666 1 1 11111 1 11 11 666666666666 555555555 222 22222222222 1111111 222222 111 1 111 1 11111111 111 11111 111111 222222222 111111111 1111 1111 11 333 2222 1 11 111 444444444 44444444444 1 11 1 11 1 1111 1 222 1 1111 222222 111 1 1 111 11111 1 11111 1 11 1 111111 11111 1111111 11 33333333333333333 111 111 444444444444444444444444444444444444444444444444444 11111 33333333 22 11111 4444444 1111 11 111 222 1 2222 1 1 11 55555555555 11 22222 111 11 11 1 222222 222 11111 1 11 111 1 88888888888888888888 22222 11 111 222 1 88888888888888888888888888888888 1 1 222 1 11 77777777777777777777777
lowQualScore : 1 3 222222 1 33333 1 1 1 5555 11 1 8 5555555 4 1 8 0 99999999 1 77777777777777777 0 333333 1 0 0 11 6 6 0 00000000 7 6 6 9999999999999 2 6 0 0 0 6 1 3 0 6 0 44444 6 6 6 6 3 88 0 7 11 7 6 888888888888 1 6 777777777 0 333 1 9999999999 77777777777 9999999 888888 777 1 1 0 1 3 3 222 0 44444444 0 7 0 2 8 5 0 444 88888 1 2 0 222222 0 6 77 5 000000000 4 777777777 0000 888 3 1 1 0000 2 888 1 11 000 6 1111 0 0 33 2 3 3 444 2 444444444 0 3 0 1 77777777777 0 0 0 1 0 33 0 1 2 0 3 11 5 0 3 11 5 1 0000 777 777 1 777 0 1 5 5 111 1 1 1 5 22 1 0 1 0 0 6 0000 1 888888 6 666 0 4 1 1 0 22 777 88888 6 2 1 44444 6 3 0 44 2 3 1 7 333333 5 1 6 1 2 3 5 66 777 11111 66 4 2 6 444 0 4444444 44 55555555555555555 5 555 111 5 333333333333333333333333333333333333333333333333333 5 9999 22222 11 5 9999 1 4 11111111 44 66666 3 1 1 0 0 6 3333333 8888 44 1 6 1 66 1 1 0 44 11 2 1 999 000 0 0 1 0000 2 1 7777 0 0 0 99 22222222222 1 1 33 1 2 00000 444 0 88 88 5 1 999999 111 1 1 1 77777 1 5 1 77 222 3 1 66666666666666666666 1 66666 1 88 999 1 1 2 22 111 1 1 22 1 5 1 1 66666666666666666666666666666666 1 5 5 1 22 1 1 1 2 22 1 1 1 111 5 88 77777777777777777777777 1 1 1 1
lowQualScore : . . ...... . ..... . . . .... .. . . ....... . . . . ........ . ................. . ...... . . . .. . . . ........ . . . ............. . . . . . . . . . . . ..... . . . . . .. . . .. . . ............ . . ......... . ... . .......... ........... ....... ...... ... . . . . . . ... . ........ . . . . . . . ... ..... . . . ...... . . .. . ......... . ......... .... ... . . . .... . ... . .. ... . .... . . .. . . . ... . ......... . . . . ........... . . . . . .. . . . . . .. . . . .. . . .... ... ... . ... . . . . ... . . . . .. . . . . . . .... . ...... . ... . . . . . .. ... ..... . . . ..... . . . .. . . . . ...... . . . . . . . .. ... ..... .. . . . ... . ....... .. ................. . ... ... . ................................................... . .... ..... .. . .... . . ........ .. ..... . . . . . . ....... .... .. . . . .. . . . .. .. . . ... ... . . . .... . . .... . . . .. ........... . . .. . . ..... ... . .. .. . . ...... ... . . . ..... . . . .. ... . . .................... . ..... . .. ... . . . .. ... . . .. . . . . ................................ . . . . .. . . . . .. . . . ... . .. ....................... . . . .
lowQualScore : 0 2 444444 4 22222 0 4 4 8888 00 0 0 2222222 2 0 0 8 00000000 0 88888888888888888 8 000000 4 8 8 00 4 7 7 33333333 3 7 7 7777777777777 0 7 7 7 7 7 0 2 0 5 8 22222 7 7 7 7 3 33 7 3 00 3 7 333333333333 0 7 000000000 7 333 0 7777777777 66666666666 5555555 888888 555 2 0 0 0 8 8 222 0 66666666 8 6 4 8 0 4 4 000 00000 0 8 2 000000 2 7 99 0 000000000 2 666666666 6666 888 1 2 0 6666 2 888 0 00 333 7 2222 0 2 22 5 2 5 222 5 555555555 2 2 8 0 55555555555 2 2 2 2 0 88 0 0 0 8 2 88 5 2 2 88 7 7 6666 888 888 0 888 9 9 7 5 000 0 0 0 5 00 0 7 0 7 7 7 8888 0 000000 5 222 0 2 2 2 0 55 555 55555 7 0 0 33333 7 3 7 33 0 7 0 3 000000 0 0 7 6 2 2 0 99 888 11111 11 4 8 8 888 2 4444444 11 88888888888888888 7 777 000 0 222222222222222222222222222222222222222222222222222 0 1111 55555 11 0 1111 0 3 00000000 33 77777 7 0 0 7 7 7 3333333 7777 77 0 7 4 00 4 4 8 66 00 2 0 555 555 2 0 0 5555 5 0 2222 0 0 2 88 55555555555 2 0 88 0 0 55555 000 2 33 33 0 0 000000 000 0 0 0 00000 0 0 0 55 333 3 0 00000000000000000000 0 00000 0 55 555 0 0 5 00 000 0 0 00 0 0 0 0 00000000000000000000000000000000 0 0 0 0 00 0 0 0 5 00 0 0 0 000 0 00 00000000000000000000000 0 0 0 0
consensus : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTCTGGNACATGGTTGACTTCTG--GA--TCGGCTT-CTAGGTTNACTTCTGGGACATGGTTGACTTCTGGA--GACAT--GGTTGATTTCTGGNACAT-G--TT-NACTTCCGGGTNGACTTCTG-GGACATA--------GCNGACTTCTAGGTAGATGCNTTAG--TTGATTTCTG------GGTCGACTTCTGGGAAATGGTTGACTTCCGAATTGACTTCTGGAATATATT--TGACTTT-AATTCTTTGATGCCGTATATAATATACAGTTAAGTTTTTAAACACACTGTTAAGACCATTTAAAACTACATA--------TCAG-AAAATACCAGTATTCTGTTTAGAGTTGTTGTTTCGCTACTATGTTAATGTCGGTACAATAACGTCGATTGGTATGTTTACAATCTCATATAGAGAGGCTAAAACAATTTAATTANAAAGATAAATA-TATCAGGAAGAATAGTCA--GACATTGTGTAACAGAAAACACAACATTTTGATT-ACACTC--GACGAAATCAAAATGAGATTAACTTACCTATTATCCAAATCTCGATTATCCCATCTTCAC------------CAACATGTAGATAATNTCTAGTCCAG------NA-CCGATTCTTCATCATCA---TCCATTACACATCTTCATCACCTGATTTATCTCNATCTTCAGTGTCATCGGTGTCATCCATAACATTACCTGATACTTCCACACACCAACTACCATCACTT-T--T--CCAT------CAT---CATCTTTATNATCA-ACGCTNTTATCATCGTCATCATCAATCACC--TATCATCGGCATCATCTGCAGTTTCATTG-ACACCATCCT---TAAC-A-T-GCCNGATACCTTCT-T-TTCATCG-CA--ATCA-T---------CATCGTTATC----G-C--CAA----C---ATCATCGTCATCGTNA----TCATCAT---CATCATCATCAGCAGCA--AACA--CTCTTGTGTCCAGTAAT----ACCT-CCATCTCCAGNTCCATTGACACCATCCTAGCATTAAA----C-AATACCTTATTATCNTTACCATCATCAT-----------CATCAGCAGCAGCAGTA-TA--TA-TATCTTNATCCGTCCAGTATTATCTCCATCTCGAGTTCCATTGACGCCATTCTTACAGTACTTTGATACAACGTTAT-CGT----TATCATCAT---CATC---ATCATCACCATCATC---ATCGTCATCGTAATCA-TCTCATCCGTCCAGTGTTATTTCCATTTCAAGTTTCATTGGTGCCATTCTAACATTACCTTTTCCCACTTTATCCCTACCATCATTTTTATCGCCAACATGATCTTCANTGCAATCATCNTCACCANCAGCATACATCTTCATCCGTCCANNGTTATCTCCATCTCNAGTTTTATCGNCGCCGTTCTAACATC-GCCTTNTACCACC----TTATCGTTAC--TC-ATCGTTCTTGTCACCAACATCATC-ACTATAATCATCAT---CATCAGCAGC---A-TATATCTTCATCCATCCATNATTATC-TCC-CATCTCAAGTA-CCGTTGACGN-CATCCTTACATTACCCGATACCANCTTATTCTTA-CC--ATCAACANCATCATCACCAACATCATCATCA-CTACA--A--TCAT-----CAT--C-GTCATCATCAACAGCAGCAGCAGTAGCAGCAGCAT-------CATG-TATCTTC-AT--GCGTCTAGT---ATTATCT-C---CATC--TCCAGTT-TTATCGNC-----ATC-AT--TCT------A-AC--ATCACC-T-------NAT-A-TC---ATCAT-----CATCATCATCATCGTC-ATCATCATC---GTCATCANCAGCAGCA----TAT-TCTTCATC-CATTA--AGTATTATCTCCATNTCCAGTCCNATCGACACCGTCATAACATTACCTTAT-------ATCACTT-NA-ACTTACCATCGNCATCNTTACCACCAACGTCATCGCCACCGTCGTCGTCGTCGTCATCGCCAGCGNCA--GCAGCAGCANCAT--ACATCTTCACCGATCCACCATTATC-TCCNTNTC-CAGCNTCATTGCCACCATC-TTAAC-ATTACCT-ATACCA-GCTTATACT-TATCAACANCAT--CANCACCGC--TACTCATCATCATCATCAG--CAGCAGCAGCAGCAGCATTAT--ATATCTTCATC--CATCCANTATAACCTCCATCTCTANTNCCATTGNCACCGATTNTGACCATNACCTGATACCATCTTAATC-TTANCATCTTGTCC---GT----AT-C-CAA---CATCATCATNATCATCATCAGCAGCAGCAGCAGCAGCGTAACCACCATCTTNACCATTATCCAGTATTTTCTCCATCTCCAGTCCAATTGACCCAATTCTAAATTTACCTGATACCACCCAATACTTACAACCATCATCCTTATCACCAACATCATCATTAATGTTATTACCATCAACAGCAGCAGCATATATCTTCACCCGTCCAGTATTTTNTNTCCNTCTCCGGTCCNNTTGACACCATCCTAGACATNACCTNATATCACCTTATACTTACCATCNNCATCCNTATCACCNACATCCTCATCACNGTT-----GNNNNNNNNNNNNNNNNNNNNNNNNNACAACAACAACAGCAGCAGAANATATCTTCAACCAGTCCAGTATNATCTCNNTCTNCAGTCCCANTNACGCCATCCGAACATAACCNNACACNANCTTATACTTACCANCTGTATCCATCAACACTGGCATTCTTATGACTGTGATCATCATCATCATCAGCAGTAGCAGNAGCATATACNTTCATNCGTCNAGTATTA
Reference ( family-1427 ) : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTCTGGNACATGGTTGACTTCTG--GA--TCGGCTT-CTAGGTTNACTTCTGGGACATGGTTGACTTCTGGA--GACAT--GGTTGATTTCTGGNACAT-G--TT-NACTTCCGGGTNGACTTCTG-GGACATA--------GCNGACTTCTAGGTAGATGCNTTAG--TTGATTTCTG------GGTCGACTTCTGGGAAATGGTTGACTTCCGAATTGACTTCTGGAATATATT--TGACTTT-AATTCTTTGATGCCGTATATAATATACAGTTAAGTTTTTAAACACACTGTTAAGACCATTTAAAACTACATA--------TCAG-AAAATACCAGTATTCTGTTTAGAGTTGTTGTTTCGCTACTATGTTAATGTCGGTACAATAACGTCGATTGGTATGTTTACAATCTCATATAGAGAGGCTAAAACAATTTAATTANAAAGATAAATA-TATCAGGAAGAATAGTCA--GACATTGTGTAACAGAAAACACAACATTTTGATT-ACACTC--GACGAAATCAAAATGAGATTAACTTACCTATTATCCAAATCTCGATTATCCCATCTTCAC------------CAACATGTAGATAATNTCTAGTCCAG------NA-CCGATTCTTCATCATCA---TCCATTACACATCTTCATCACCTGATTTATCTCNATCTTCAGTGTCATCGGTGTCATCCATAACATTACCTGATACTTCCACACACCAACTACCATCACTT-T--T--CCAT------CAT---CATCTTTATNATCA-ACGCTNTTATCATCGTCATCATCAATCACC--TATCATCGGCATCATCTGCAGTTTCATTG-ACACCATCCT---TAAC-A-T-GCCNGATACCTTCT-T-TTCATCG-CA--ATCA-T---------CATCGTTATC----G-C--CAA----C---ATCATCGTCATCGTNA----TCATCAT---CATCATCATCAGCAGCA--AACA--CTCTTGTGTCCAGTAAT----ACCT-CCATCTCCAGNTCCATTGACACCATCCTAGCATTAAA----C-AATACCTTATTATCNTTACCATCATCAT-----------CATCAGCAGCAGCAGTA-TA--TA-TATCTTNATCCGTCCAGTATTATCTCCATCTCGAGTTCCATTGACGCCATTCTTACAGTACTTTGATACAACGTTAT-CGT----TATCATCAT---CATC---ATNATCACCATCATC---ATCATCATCGTAATCA-TCTCATCCGTCCAGTGTTATTTCCATTTCAAGTTTCATTGGTGCCATTCTAACATTACCTTTTCCCACTTTATCCCTACCATCATTTTTATCGCCAACATGATCTTCANTGCAATCATCNTCACCANCAGCATACATCTTCATCCGTCCANNGTTATCTCCATCTCNAGTTTTATCGNCGCCGTTCTAACATC-GCCTTNTACCACC----TTATCGTTAC--TC-ATCGTTCTTGTCACCAACATCATC-ACTATAATCATCAT---CATCAGCAGC---A-TATATCTTCATCCATCCATNATTATC-TCC-CATCTCAAGTA-CCGTTGACGN-CATCCTTACATTACCCGATACCANCTTATTCTTA-CC--ATCAACANCATCATCACCAACATCATCATCA-CTACA--A--TCAT-----CAT--C-ATCATCATCAACAGCAGCAGCAGTAGCAGCAGCAT-------CATG-TATCTTC-AT--GCGTCTAGT---ATTATCT-C---CATC--TCCAGTT-TTATCGNC-----ATC-AT--TCT------A-AC--ATCACC-T-------NAT-A-TC---ATCAT-----CATCATCATCATCGTC-ATCATCATC---GTCATCANCAGCAGCA----TAT-TCTTCATC-CATTA--AGTATTATCTCCATNTCCAGTCCNATCGACACCGTCATAACATTACCTTAT-------ATCACTT-NA-ACTTACCATCGNCATCNTTACCACCAACGTCATCGCCACCGTCGTCGTCGTCGTCATCGCCAGCGNCA--GCAGCAGCANCAT--ACATCTTCACCGATCCACCATTATC-TCCNTNTC-CAGCNTCATTGCCACCATC-TTAAC-ATTACCT-ATACCA-GCTTATACT-TATCAACANCAT--CANCACCGC--TACTCATCATCATCATCAG--CAGCAGCAGCAGCAGCATTAT--ATATCTTCATC--CATCCANTATAACCTCCATCTCTANTNCCATTGNCACCGATTNTGACCATNACCTGATACCATCTTAATC-TTANCATCTTGTCC---GT----AT-C-CAA---CATCATCATNATCATCATCAGCAGCAGCAGCAGCAGCGTAACCACCATCTTNACCATTATCCAGTATTTTCTCCATCTCCAGTCCAATTGACCCAATTCTAAATTTACCTGATACCACCCAATACTTACAACCATCATCCTTATCACCAACATCATCATTAATGTTATTACCATCAACAGCAGCAGCATATATCTTCACCCGTCCAGTATTTTNTNTCCNTCTCCGGTCCNNTTGACACCATCCTAGACATNACCTNATATCACCTTATACTTACCATCNNCATCCNTATCACCNACATCCTCATCACNGTT-----GNNNNNNNNNNNNNNNNNNNNNNNNNACAACAACAACAGCAGCAGAANATATCTTCAACCAGTCCAGTATNATCTCNNTCTNCAGTCCCANTNACGCCATCCGAACATAACCNNACACNANCTTATACTTACCANCTGTATCCATCAACACTGGCATTCTTATGACTGTGATCATCATCATCATCAGCAGTAGCAGNAGCATATACNTTCATNCGTCNAGTATTA
gi|1 : TTCTGAGGAC------------CGCATCTCCACGTACATGCGTAAAAATTG--TTCTGAGATATGGTTGACCTTT----AA--GTCGACTTCTGTGTTTACTTCTGGAACATGGT--TGATTT
gi|1 : tgtTTCTGAGATATGGTTGACCTTTA--AG--TCGACTT-CTGTGTTTACTTCTGGAACATGGTTGATTTCTGAA---ACAT--GGTTGACTTCTGGAACAT-G--TT-TTTTTCTGGATAGACTTCTG-G-ACATA--------GCAGACTTCTAGATAGATGCCTTAG--TTGATTTCTT------GGTCGATTTCAGGGAAGTGGTTGACTTTCAAATTGACTTCTGGAATATATT--TGACTTTCAATTCTTTGATACCATATATAATATACAAT---GTTT--AAACACACTGTTAAGACCATTTAAAACTACATAATATTTTATCAGTAAAATACCTGTATTCTTTTTAAAGTTGTTGTTTCACTACTATGTTAATGTCGGTACAATTATGTTGACTGGTATGCTTACAATCTCATATAGAGAGGCTAAAACAATTTAATTAGAAAGATAAATA-TATCAGGAAGAATAGTCA--GACATTGTGTAACAGAAAACACAACATTTTGATT-ACATTC--GACAAAATCCTATTAAGATTAACTTA----TTATCCAAATCTCGATTATCCCATCTTCACCAACAGCTTCACCAACATGTAGATAATGTCCAGTCCAG------CAACCAATTCTTCATCACCA---TCCATTACACATCTTCATCACCTGATTTATCTCAATCTTCAGTGTCATCGGTGTCATCCATAACATTACCTGATACTTCCACACACTAACTACCATCACTT-T--T--CCAT------CAT---CATCCTTATGATCA-ACACTTTTATCATCATCATCATCAATCACC--TATCATCAGTATCATCTGCAGTTTCATTG-ACACCATCCT---TAACAA-T-GCCCGATACCTTCT-T-TTCATTG-CA--ATCA-T---------CATCCTTATC----A-C--CAA----C---ATCATCATCACTGTAA----TCATCAT---CATCATCATCAGCAGCA--AACA---TCTTGTGTCCAGTAAT----ACCT-CCATCTCCAGCTCCATTGACACCATCCTAGCATTAAA----CAAATACCTTATTATCCTTACAATCATCAT-----------CATCAGTAGCAGCAGTA-TA--TA-TATCTTGATCCGTCCAGTATTATCCCCATCTCCAGTTCCATTGACACC-TTCTTACAGTAC-TTGATACAACGTTAT-CCT----TACCATCAT---CATT---ATGATCACCAACATC---ATCATCACTGTAATCA-TCTCATCCGTCCAGTGTTATTTCCATTTCAAGTTTCATTGGTGCCATTCTAACATTACC-TTTCCCACTTTATCCCTACCATCATTTTTATCGCCAACATGA---TCACTGCAATCATCATCACCATCAGTATACATCTTCATCCGTCCATGGTTATCTCCAACTCAAGTATTATTGACACCATTCTAACATT-TCCCGGTACCACC----TTATTCTTAC--TC-ATCATTCTTATCACCAACATCTTC-ACTGCAATCATCAT---CATCAGCAGC---A-TGTATCTTCATGCGTCTAGTATTATC-T-C-CATCTCCAATT-CTATTGACAA-CAACCTAACATTACCAGATACCAGCTTATTCTTA-CC--ATCAACAACTTTATCGCCAACATCATCATCA-CTGCA--A--TCAT-----CAT--C-ATCATTATTAGCAGCAGCAGCAGTAGCAGAAGCAG-------CATG-TATCTTT-AT--GTGTCTAGT---ATTATCT-C---CATC--TCCAGTT-TTATTGAC-----AGC-AT--CCT------A-AC--ATTACC-T-------GAT-A-CC---ACCTT-----CATCACCATCACTGTT-ATCACCATC---ATCATCATCAGCAGCA----TATCTCTTCACC-TATTA--AGTACTATCTTCATCTCCAGTTCACTTGACACCAGCCTAACATTACCTGAT-------ACCACCTAAA-ACTTACCATCATCATCTTTACCACCAACACCATCACCACTGTTATCTTCATCATCATCACCAGCTTCA--GCAGCAGCAGCAT--ATATCTTCACCTATCCAGTATTATC-TCCTTCTC-CAGTCTCATTGACACCATC-CTAAC-ATTACCTGATACCA-GCTTATACT-TACCAACATCAT--CAACACTGTGATACTCATCACCATCATCAG--CAGCAGCAGCAGCAGCATTAT--ATATCTTCACC--TATCCAGTATAACCTCCATCTCTAGTCCCATTGAC-CCAATTCTAA-CATTACCTAATACCACCTTAAAC-TTACCATCTTGTCC---AT----ATAC-CAA---CATCATTATCATCATCATCAGGAGCAGCAGCAGCAGCATA-----TATCTTTACC--TATCCAGTATTTTCTCCATCTCCAGTCCAATTGACCCAATTCTAAATTTACCTGATACCACCCAATACTTACAACCATCATCCTTATCACCAACATCATCATTAATGTTATTATCATCAACAGCAGCAGCATATATCTTCACTTATCCAGTATTTTTTCTCCATCTCCAGTCCATTTGACACCATTCT-GACATTACCTGATATCACCTTATACTTACCATCATCATCCTTATCATCTACATCCTCATCACTGTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTATATCTTCAACTA-TCCAGTATAATCTCATTCTCCAGTCTCAATGATGCCATCCTAACATAACCTGACACAAGCTTATACTTACCAAC---AT-CATCAACACTG-----------------------ATCATCATCAGCAGTAGCAGCAGCATATATATTCATGTATCGAGTATTActgaaacatggttgacttctggaacatgtttttttctggatagacttctggacatagcagacttctagatagatgccttagttgatttcttggtcgatttcagggaagtggttgactttcaaattgacttctggaatatatttgactttcaattctttgataccatatataatatacaatgtttaaacacactgttaagaccatttaaaactacataatattttatcagtaaaatacctgtattctttttaaagttgttgtttcactactatgttaatgtcggtacaattatgttgactggtatgcttacaatctcatatagagaggctaaaacaatttaattagaaagataaatatatcaggaagaatagtcagacattgtgtaacagaaaacacaacattttgattacattcgacaaaatcctattaagattaacttattatccaaatctcgattatcccatcttcaccaacagcttcaccaacatgtagataatgtccagtccagcaaccaattcttcatcaccatccattacacatcttcatcacctgatttatctcaatcttcagtgtcatcggtgtcatccataacattacctgatacttccacacactaactaccatcacttttccatcatcatccttatgatcaacacttttatcatcatcatcatcaatcacctatcatcagtatcatctgcagtttcattgacaccatccttaacaatgcccgataccttcttttcattgcaatcatcatccttatcaccaacatcatcatcactgtaatcatcatcatcatcatcagcagcaaacatcttgtgtccagtaatacctccatctccagctccattgacaccatcctagcattaaacaaataccttattatccttacaatcatcatcatcagtagcagcagtatatatatcttgatccgtccagtattatccccatctccagttccattgacaccttcttacagtacttgatacaacgttatccttaccatcatcattatgatcaccaacatcatcatcactgtaatcatctcatccgtccagtgttatttccatttcaagtttcattggtgccattctaacattacctttcccactttatccctaccatcatttttatcgccaacatgatcactgcaatcatcatcaccatcagtatacatcttcatccgtccatggttatctccaactcaagtattattgacaccattctaacatttcccggtaccaccttattcttactcatcattcttatcaccaacatcttcactgcaatcatcatcatcagcagcatgtatcttcatgcgtctagtattatctccatctccaattctattgacaacaacctaacattaccagataccagcttattcttaccatcaacaactttatcgccaacatcatcatcactgcaatcatcatcatcattattagcagcagcagcagtagcagaagcagcatgtatctttatgtgtctagtattatctccatctccagttttattgacagcatcctaacattacctgataccaccttcatcaccatcactgttatcaccatcatcatcatcagcagcatatctcttcacctattaagtactatcttcatctccagttcacttgacaccagcctaacattacctgataccacctaaaacttaccatcatcatctttaccaccaacaccatcaccactgttatcttcatcatcatcaccagcttcagcagcagcagcatatatcttcacctatccagtattatctccttctccagtctcattgacaccatcctaacattacctgataccagcttatacttaccaacatcatcaacactgtgatactcatcaccatcatcagcagcagcagcagcagcattatatatcttcacctatccagtataacctccatctctagtcccattgacccaattctaacattacctaataccaccttaaacttaccatcttgtccatataccaacatcattatcatcatcatcaggagcagcagcagcagcatatatctttacctatccagtattttctccatctccagtccaattgacccaattctaaatttacctgataccacccaatacttacaaccatcatccttatcaccaacatcatcattaatgttattatcatcaacagcagcagcatatatcttcacttatccagtattttttctccatctccagtccatttgacaccattctgacattacctgatatcaccttatacttaccatcatcatccttatcatctacatcctcatcactgttnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntatatcttcaactatccagtataatctcattctccagtctcaatgatgccatcctaacataacctgacacaagcttatacttaccaacatcatcaacactgatcatcatcagcagtagcagcagcatatatattcatgtatcgagtatta
gi|10 : tgtttctgaggaccgcatctccacgtacatgcgtaaaaattgATCGACATCGT-ATAACAATACTTTATCGACATAGTCATTG-CA-AACTATTATCGACATCGTCACTGCCAATGCCATTGCCACCGTTTTCGACATCGTAATTGTCATCGTCATTGCTG--ACGTTATTGACATTTTCATTGA--CACCATTATC-TCCAT-------CGTTATTGCCACCGTTATTGAT-ATTGTCA-ATATCA---TTG---T-TATCGACAGCGT--CATTGCCAT--T-TTCAT
gi|11 : ttTCATCATCATCGTCGTTGTCGTCGTCGCCGCC-GNNNNN--NNNNNNNNNNNNN--NNNNNNNNNNNNNNNCATTATTGTCATATTTATCACAGCATCATAATCATCATT-TTAAT-ATTAACT-ATACCGTGATCATA----ATCAATATCATACCATTACCAC---AGTCATCATCATTATCGGTATAGCAGCAACATCAATATTAT--ATAGCAGCATC--t
gi|12 : aCATTGTTGATTTCTT--GA--TTAACTA-CTAGGCTGACATCTTAGATATGGTTGACTTCTGGGCTGGCATCTGATATATTGTTGGTTTAT-GGTTT-TACTCCCGGGTTGACTACTA-GGATATGACTTAGAGGCTGACTTCT-GGTA----CATTA---TTGATTTCTG------AAACAACTTCTGGGAAATGGTTGACTTCTGGGCTGATATCTGG--TACATTGCTGATTTagaagacac
gi|13 : AACATCATCATCATCTACA--AATTCATGTTACCTT--CTAACATCATCTACATCATCAGCATTATATTCAACAT-------CATGATATCTTC-CA--ACATCTA-T---ATCATCA-CTATCATC--TTCAATT-TCAT-GAT-----ATC--T--TCT------A-AT--ATCAACAT-------TATCA-TC---TTCAA-----CATCATGATAATCTTCCAACATCATCTAAATCATCACCATCA-----------TCTTCA
gi|14 : ccttgCAACAACATCAACACCACTATCAAC-----CATCAGCAATAGCACCA--GCAGCAGCACCAC---CACCGCCACCA--CCACCGTTACC-TCCAAGAC-CACCCTCA---CCACAATC-TCAACCACCACC----ACCA-AC--A-ACAATAACAACAACAT--CAACACCAC--TACCAACCATCATCAGCAG--CAGCAGTACCAGCAGCaca
gi|15 : TCATCA-TTACA--A--CC-------CATAGC-TTCATCATCAACAGCAGCATCAATAGCATTCTCAT-------CAT--CATCAAC-ATAAGTGGC-AGTGACATTATTT-CA--CACC--ATCAG-------CAGC-----ATCAAT--TC----------C--ATTGTA-T-------AA--A-TC---ACCAC-----CACCATCATCA--GTC-ATCATCATT---GTCATCA
gi|16 : tT-----CAT--C-ATCATTATCAGCAGCAGCA
gi|16 : TCATCATC---ATTATCAGCAGCAGCA--------TCTTTAT--CATTA--CTTTTTATCtctttatcattactttttatcattatcattattatttttgttatcattatcattaccatgatgatggtgatggtgatggtgatgatcatgatgatacagtacgattattataa
gi|16 : TCA-T---------CATCATTATC----A-G--CAG----C---AGCATCTTTATCATTACTTTTTATCAT---TATCATTATTAattatcattattatttttgttatcattatcattaccatgatgatggtgatggtgatggtgatgatcatgatgatacagtacgattattataa
gi|16 : AT-CGTACTGTATCATCATGATCATC---ACCATCACCATCACC---ATCATCATGGTAATGA-Ttttttgttatcattatcattaccatgatgatggtgatggtgatggtgatgatcatgatgatacagtacgattattataa
gi|18 : tcatcatcattatcagcagcagcatctttatcattactttttatcattatcattattatttttgttatcattGTTGTTATCATC-----AGT-ATAATC-------A-AT--ATTA---T-------AAT-T-TC-----TAT-----CATCATAACCATGATC-ATCATTATT---GTCATCATCAGCA-----------TCCTCAT--CATTAATAGTATTATtattataa
gi|19 : ggctgctaaatttaatatcATCGCTATCACTAGCTTTTTCGTCAACGGT--AGCATC-AT-TTACATCA------TTATTGTTA---TC-GTCGTTGTCGGCGTCATCATCATC-ATCAAAATCATCAT---CATCAGCAGC---A-tatt
gi|2 : catcaccCATGTTTG-CTTCTG--GAACTTGGTT-----GGTTAACTTCTGGAACATGGTTGAATTCTGGA---ACAT--GGTTGACTTCTGAAACATAG--TT-GACTTCTGGATAGACTTATT-GGACATA--------GCAGACTTCAAGGTAGATGCCTAAG--TTGATTTATA------GGTCGATTTCAGGGAAATAGTTGACTTTCAAATTGACTTCTGGAATATATT--TGACTTTGAATTCTTTGATGCCATATATAATATA----TAA-TGTTTGAACACACTGTTAAGACCATTTAAAA-----------------------ATACCAGTATTCTGTTTAGAGTTGTTGTTTTGCTACTATGTTAATGTCAGTAAAATAATGTCAATTGGTATGTTTACAATCTCATATAGAAAGGCTAAAACAATTCAATTAGAAAGATAAATA-TATCAGGAAGTATAGTCG--GACATTGTGTAACAGAAAACACAACATTTTGATT-ACACTC--ATCAAAATCAAAATGAGA-----TTACCTATTATCGAAATCTCGATTATCCCATCTTCAC------------CAACATGTAGATAATAT-TAGTCCAGTCCTGCAA-CCAATTCTTCATCATCA---TCCATTACACATCTTCATCACCTGATATATCTCCATCTTCAGTGTCATCGGTGTCATCCATAAC----------ACTT----------ACTACCATCACAT-T--T--CCAT------CAT---CATCATTATGATCA-ACACTTTTATCA---TCATAATCAATCACC--TATCATCAGTATCATCTGCAGTTTCATTG-ACACCATCCT---TAAC-ATT-ACCCGATACCTTCT-T-ATCATTA-CA--ATCA-T---------TATCCTTAGC----G-C--CAA----C---ATCATCATCACTGTAA----TCATCAT---CATCATCAGCAGCAGCA--AACATCTTCTTGTGTCCAGTAAT----ACCT-CCATCTCCAGTTCCATTGACACCATCCTAGCATTACC----T-AATACCTTTTTATCCTTACCATCATCATTTTATCACCAACATTATCATCATTAGCA-TA--TA-TATCTTTATCCATCCAGTATTATCTCCATCTCGAGTTCCATTGATGCTATTCTTACAGTAC-TTGATACAACGTTAT-CCT----TACCATCAT---CATT---CTGATCACCAACATC---ATCTTCAATGTAATCA-TCTCATCCGTCCAGTGTTATTTCCATTTCAAGTTTCATTGGTGCCATTCTAACATTACCTTTTCCCACTTTATCCCTACCATCATTTTTATCACCAACATGATCTTCAATGTAATCATCCTCATCAGCAGCATACATC-TCATCTGTCCAGTATTATTTCCATTTCCAGTTTCATTGGTGCCATTCTAACATT-GCCTTTTACCACT----ATATCCTTACCATT-ATCATTCTTATCACCAACATCATC-ACTATAATCATCATCACCATCAGCAGCAGTA-TACATCTTCATCCATCCATGATTATC-TCC-CAACTCAAGTA-TCGTTGACGC-CATTCTTACATTACCCAATACCACCTTATTCTTA-GC--AT---TATCATCATCACCAACATAG--A-CA-CTGCA--A--TCAT-----CAT--C-AT---------CAGCAG-------------------------CATG-TATCTTC-AT--GCATCTTGT---ATTATGT-C---CATC--TCCAGTT-TTATTGACCGTATACC-AC--TTT------ATACTTACCATC-TGTATCCATAT-A-CCAAAATCCT-----CATCACTGTGATCATC-ATCATCATC---ATCATCAACAGCAGCAGCAGTATATCTTCATC-CATCC--AGTTTTATCACCATGTCCAGTCCCATTGACACCATCATAGCATTACCGTAT-------ATCACTT-TATACTTACCATCTGTATCCATA-TACCAACATCat
gi|20 : acactccttacctgaatctatacgttggcaatcagtggatcccgtatgtaaaactttcgaaggactgtgcttctgtttctgaggaccgtCC------A-GC--ATCACCAT-------CAT-AATA---ATCAT-----CATCATCATAATCGTT-GTCGTCGTC---GTAATGAACAGCCGCA----TAT-T-TTCAT----TTA--TATATTAACT
gi|21 : TTCTGGCACATGGTAGACTTCAG--AA--TTGGCAT------TTTATTTCTGTCACATGGTAGACTTCAGTATCGGCAT----TTCATTTCTGGCACAT-G--GTAGACTTCgatatatgattcagttacat
gi|22 : tgtttaatGTTCAATTTGCATTATGTTTAC--TATTTGAATAT----TCATTCGT-----ATCATCAT---CATC---ATCATCATCATCGAC---ATTGTCTTCATAATCA-TCTC
gi|23 : atgtTATTACCATCATCAGCAGCAGCATATcatgag
gi|23 : ATTACC---ATCATCAGCAGCAGCA----TAT-TTATCATTGCATT-------TTATCttatcattgcattttatcattattataactgttgttattactatcattataatcattgttatcgttat
gi|24 : tCATCAGCATTAGCATTATCA-CAATC--A--TCAT-----CAT--C-ATCGATATCAACAGCAGCAGCA-TAGC--CACCAC-------CACA-T-TCTAC-Aattattataactgttgttattactatcattataatcattgttatcgttat
gi|25 : AGAAGTAGTAGTAGTAGCATGTGTTGTCAT--TAACTTC-AT-----TATGGT-----CATTT-T---CATTATTCCATTT-TTATCGCC-----ATT-AT--TGT---------C--ATTACC-acatcaacagcaga
gi|26 : TTCTTAACCTAATCAATACAATCATCAACACCATCACAATCA-CTATA--A--CCAA-----CAT--C-AGCATTATCATCAGCAGCAGCAACAGCAGAAGatc
gi|27 : tCATTTTT----TGCTTTTAT-TATCATTAT-CAG----CATCATCAT---CATCATAATAATCACCATCATC---ATAATCACC
gi|27 : TTAT-CAT----TATCAGCAT---CATC---ATCATCATAATAATC---ACCATCATCATAATCA-CC
gi|28 : cattttttgcttttaATAC-ATCATAATCATTATGATCTTGATC---GT----G-----------ATAATCACAATCATCATCAGCAGCAACAGCAGCA
gi|29 : T----TATCATTAT---CATC---ATGCTCAGCATCATC---ACTATCATGAAAATCA-TTTta
gi|3 : ttaTTCTGAGGA--TCGTCTTTCTAGGTTGATCTCTGGGACATGGTTGATCTCTGG---GACAT--GGTTGATTTCTGGGACAT-G--------------GTTGACTTCTG-GGATACA--------GCCGACTTCT-----------TT-G--TTGACATCTG------AGTCAACTTCTGGGACATGGTTGACTTCTGAATTAACTACTGGAATATATC--TGA---------------TGCCGTATAAAATATACAGTTAAGTTTTTAAA---ACTGTTAAGACCAATTAAAACTACATA--------TCAGGAAAATACCAGAATACTGTTTA-AGTT-TTGTTTTGCTACTATGTTAGTGTCGGTACAATAACGCCAATAAGTATGTTTGTAATCTTATGTAGAGA--CTAGAGCAATTTAATTACAAAGATAA--A-TATTATGAAGAATGG--A--GATATTattaatattaatatc
gi|31 : catactccttacctggatctatacctggaactataggtatgtggccaatcagtggatcccaaatgtaaagctttcaaatgaatggacttctgt--ATCG-T---------CGTCGTGGTC----GTC--CGGTTGTC---GTTGTCGTCGTCGTCA----TTATCAT---CATCATCATCAGC
gi|32 : AGCAGCAGCAGCAGCAT-------CAT--TATCCTCGAT--GT------T---ATTATC
gi|33 : GTCGTCGTCGTCGTCGTTGTTGTCATCATCATCAGCAACA--GCAGCAGCAGCAataaaattataattatcact
gi|4 : CAACAGAAGCAGTAGATATCTTCATCCGTCCAGTATT--ATATCCTTCTCGGGTCCCATTGACACCATCCTAG-CATGACTTTATATCACTTTATACTTACCATCTGTATCCATAT-ACCAACATCCTCATCACAGT------GNNNNNNNNNNNNNNNNNNNNNNNNNACAACAACAACAGCAGCAGAAGATATCTT-AATCAGTCCAGTATTATCTCCATCTGCAGTCCCATTTACACCATCTGAACATAACCGTATATCACTTTATACTTACCATCTGTATCCAT--ATACTAGCATTCTTATGACTGTGATCATCATCATCATCAACAATAACAGAAGTATATACCTTCATCCGTCCAGTATTAg
gi|4 : aAT----ACTTACCATCTGTA--TCCAT-------ATACTAGCATT--------------CTTATGACTGTGATCATCATCAT-----------CATCAACAATAACAGAAGTA--TA-TACCTTCATCCGTCCAGTATTATATCCATCTCGAGTCCCATTGACACCAtatccatctcgagtcccattgacacca
gi|5 : acaacagaagcagtagatatcttcatccgtccagtattatatccttctcgggtcccattgacaccatcctagcatgactttatatcactttatacttaccatctgtatccatataccaacatcctcatcacagtgnnnnnnnnnnnnnnnnnnnnnnnnnacaacaacaacagcagcagaagatatcttaatcagtccagtattatctccatctgcagtcccatttacaccatctgaacataaccgtatatcactttATTATCAT---TATC---ACCATTACCATCATTTTAATGACCATACTGATCATTCTCATC
gi|5 : cCACCA-TTACCATCATTT-TAATGACCATACTGATCATTCTCATCTTTACTGTCAGATGCTCT-A-CATAATCATCAGCAG-CAGCAGTAACAGCAGCATTATNNNNNNNNNNNNNN-NNNNNNNNNN---NNNN-N-N-NNNNNNNNNNNNNN-N-NNNNNNN-NN--NNNNNT---------TGTCAGGAGCAGCAG-CAGCAG----C---ATGATCAACATCTTGA----TCAACAT---CATTATCATCATTATCATTATCA--CTGTTATGACCA-TAATGATCATTT-TCATCTTTACATC--TTGTC-----CCTGG--TTGAAATCTC-AATATC--ATCATCATTATCATCATCAT-----------CATCAGCAGCAGCAGTG-TAACCACCATCTTAATCtttactgtcagatgctctacataatcatcagcagcagcagtaacagcagcattatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnttgtcaggagcagcagcagcagcatgatcaacatcttgatcaacatcattatcatcattatcattatcactgttatgaccataatgatcattttcatctttacatcttgtccctggttgaaatctcaatatcatcatcattatcatcatcatcatcagcagcagcagtgtaaccaccatcttaatcattatcatca
gi|5 : cattatcattatTCAG--GAGCAGCAGCAGCAGCATGATCAACATCTTGATCAACAT-CATTAT------CATC---ATTATCATTATCACTG-TTATGACCATAA--TGAT--CATTTTCATC-TTTACATCTTGTCCCTGGTTGAAAT-CTCAATATCATCATCATTATCATCATCATCATCAGCAGCAGCAGTGTAACCACCATCTTAATCATTATCattatcatca
gi|6 : cattatcattatcaccattaccatcattttaatgaccatactgatcattctcatctttactgtcagatgctctacataatcatcagcagcagcagtaacagcagcattatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnttgAACAGCTGCTTTCTATTATCAACATCATCACTAC--TTTATCTTTCTAGTCATCAGCATGATCTATTTTTATCAACAT---CATCATTACC---ACTATATCATCATC-ATC-ATCATTATCGTCCTCAT---AAGCAGCTGATTATGTGTAT--TTGTATTAGCTGCTATTAATTT--TGTT---C--ATAAACATCATCATCT------TCATTATGA-CTATATCA--TCAT-----CAT--T-GTCATCATCATCATCCTCCTCATTAGCAGCTG-AT-------TATG-TGTATTT------------GT---ATTAGCTGC---TATT-----AATT-TTGT----------TC-AT--A--------A-AC--ATCA---T-------CATCA-TC---ATTATGACTATATCATCATCATTGTC-ATCATCATC---CTCCTCAatca
gi|7 : atctcaaccatcagcCAAAGTTAT-TGG----TATTGTTAT----GTC---ATCATAATTATCATG---ATTGACATCGTAATtt
gi|7 : attctTATTGTTAT-GTCATCAT-AATTATC---ATGATTGACATC----GTAATGTCGT-----A--ATCAT---TATC-A-TCGCTGGTTACATT--------ATCA-TA--TTCA-T---------CATCACT-------G-C--TAA----C---ACCATCGTCATCGTAA----T-ATCATAGGCATCATCAgtcgtaatcattatcatcgctggttacattatcatattcatcatcactgctaacaccatcgtcatcgtaatatcataggcatcatcaaaattacagtgtacatcaacttagacaacagtgtcagatttattattaattgcattatcataagtaatgacatcgttatcatcgacatcatcaccaatatattcattatcgtcataataattagcatcgtcaataacatcg
gi|7 : attctcaaagttattggATTATCATCGCTGGT--T--ACAT------TAT---CATATTCATCATCA-CTGCTAACACCATCGTCATCGT-AA-------TATCATAGGCATCATC-AAAATTACAGTGTACATCAACTTAGACAAC-AGT-GTCAGAT---TTAT-TATTAATTG-CATTATCA-TAAGTAATGACATCGTTATC----A-T--CGA----C---ATCATCACCAATATAT----TCATTAT---CGTCATAATAATTAGCA--aaattacagtgtacatcaacttagacaacagtgtcagatttattattaattgcattatcataagtaatgacatcgttatcatcgacatcatcaccaatatattcattatcgtcataataattagcatcgtcaataacatcg
gi|8 : attctcaaagttattggtattgttatgtcatcataattatcatgattgacatcgtaatgtcgtaatcACAATTTAATTATGAAGATAGATACTGT--GAAAGAAACGTAAATGGCATTAT-TAA-AGAAAGCA-----TTTT-ATTGACACTCTTGACGAGA--AAAA----ATTAACTTACCTATTATCCAAGTCTTGGCTACCCCAACTTTAT------------CAATATTTGAATGACTTCTAACCCAG------GATCCGATTCTTTACTATCACACTCCATCATACATCTTTATCTACTGGCTTATTTCTATCTTCAGTTTCATCGATGTCATCCATAACATTACTTGtcgtcaataacatcg
gi|9 : CTTCTGT-TTCATCATCA--A-CA-C---------CACCATTATC----A-T--CAA----CAATATCATCACCAACATCA----TTAACAA---CACCATTGTCAACAGCA--A
gi|9 : gTTA-TC--ATCAACAATATCATCACCAACATCATTA------ACA--A---CAC-----CAT--T-GTCAACAGCAACAACAANNNNNNNNNNNNNNNNNN-------NNNN-NNNNNNN-NN--NNNNNNNNN---NNNNNNN-N---NNNN--NNNNNNN-NNNNNNNN-----NNN-NN--NNNNNNNGCA-AC--AACAAT-T-------T-C-A-GC---ATCAT-----TATCATCAACACCACC-ACCATCATC---ATCATcaacaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngcaacaacaatttcagcatcattatcatcaacaccaccaccatcatcatcataattttgtcaagtcttactaaatac
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|17 ): CACTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCCACCGTTATCATCATACCCCATCATCAGTGCTAT
Unaligned ( gi|30 ): TTGTCATTATTATCATTATTGTTATCAGTAATATCCTCTTTTTTTCCATCTCGCCCTCCTCCTCCT
Alignments
lowQualScore : 111111 22222 3333 11 2222222 22222222 11111111111111111 222222 11 2 22222222 6666666666666 1 1 11111 1 11 11 666666666666 555555555 222 22222222222 1111111 222222 111 1 111 1 11111111 111 11111 111111 222222222 111111111 1111 1111 11 333 2222 1 11 111 444444444 44444444444 1 11 1 11 1 1111 1 222 1 1111 222222 222 111 11 111 11111 11 3333333333333333333333 1 11 4444444444444 111 3333333 33333333333333333333333 1111111 11 33333333333333333 111 111 444444444444444444444444444444444444444444444444444 11111 33333333 22 11111 4444444 1111 11 111 222 1 2222 1 1 11 55555555555 11 22222 111 11 11 1 222222 222 11111 1 11 111 1 88888888888888888888 22222 11 111 222 1 88888888888888888888888888888888 1 1 222 1 11 666666666666666666
lowQualScore : 1 3 222222 1 33333 1 1 1 5555 11 1 8 5555555 4 1 8 0 99999999 1 77777777777777777 0 333333 1 0 0 11 6 6 0 00000000 7 6 6 9999999999999 2 6 0 0 0 6 1 3 0 6 0 44444 6 6 6 6 3 88 0 7 11 7 6 888888888888 1 6 777777777 0 333 1 9999999999 77777777777 9999999 888888 777 1 1 0 1 3 3 222 0 44444444 0 7 0 2 8 5 0 444 88888 1 2 0 222222 0 6 77 5 000000000 4 777777777 0000 888 3 1 1 0000 2 888 1 11 000 6 1111 0 0 33 2 3 3 444 2 444444444 0 3 0 1 77777777777 0 0 0 1 0 33 0 1 2 0 3 11 5 0 3 11 5 1 0000 888 888 2 3 0 5 111 1 1 1 5 22 1 0 1 0 0 6 0000 1 888888 3 222 8 4 444 8 11 2 444 0 88888 4 77 6 1 7777777777777777777777 0 11 7777777777777 2 888 0 1 2222222 3 77777777777777777777777 1 5 0 3 4 66 66 66 66 9999 777 4 0 6 333 0 4444444 44 55555555555555555 5 555 111 5 333333333333333333333333333333333333333333333333333 5 9999 22222 11 5 9999 1 4 11111111 44 66666 3 1 1 0 0 6 3333333 8888 44 1 6 1 66 1 1 0 44 11 2 1 999 000 0 0 1 0000 2 1 7777 0 0 0 99 22222222222 1 1 33 1 2 00000 444 0 88 88 5 1 999999 111 1 1 1 77777 1 5 1 77 222 3 1 66666666666666666666 1 66666 1 88 999 1 1 2 22 111 1 1 22 1 5 1 1 66666666666666666666666666666666 1 5 5 1 22 1 1 1 2 22 1 1 1 111 5 88 333333333333333333 1 1 1 1
lowQualScore : . . ...... . ..... . . . .... .. . . ....... . . . . ........ . ................. . ...... . . . .. . . . ........ . . . ............. . . . . . . . . . . . ..... . . . . . .. . . .. . . ............ . . ......... . ... . .......... ........... ....... ...... ... . . . . . . ... . ........ . . . . . . . ... ..... . . . ...... . . .. . ......... . ......... .... ... . . . .... . ... . .. ... . .... . . .. . . . ... . ......... . . . . ........... . . . . . .. . . . . . .. . . . .. . . .... ... ... . . . . ... . . . . .. . . . . . . .... . ...... . ... . . ... . .. . ... . ..... . .. . . ...................... . .. ............. . ... . . ....... . ....................... . . . . . .. .. .. .. .... ... . . . ... . ....... .. ................. . ... ... . ................................................... . .... ..... .. . .... . . ........ .. ..... . . . . . . ....... .... .. . . . .. . . . .. .. . . ... ... . . . .... . . .... . . . .. ........... . . .. . . ..... ... . .. .. . . ...... ... . . . ..... . . . .. ... . . .................... . ..... . .. ... . . . .. ... . . .. . . . . ................................ . . . . .. . . . . .. . . . ... . .. .................. . . . .
lowQualScore : 0 2 444444 4 22222 0 4 4 8888 00 0 0 2222222 2 0 0 8 00000000 0 88888888888888888 8 000000 4 8 8 00 4 7 7 33333333 3 7 7 7777777777777 0 7 7 7 7 7 0 2 0 5 8 22222 7 7 7 7 3 33 7 3 00 3 7 333333333333 0 7 000000000 7 333 0 7777777777 66666666666 5555555 888888 555 2 0 0 0 8 8 222 0 66666666 8 6 4 8 0 4 4 000 00000 0 8 2 000000 2 7 99 0 000000000 2 666666666 6666 888 1 2 0 6666 2 888 0 00 333 7 2222 0 2 22 5 2 5 222 5 555555555 2 2 8 0 55555555555 2 2 2 2 0 88 0 0 0 8 2 88 5 2 2 88 7 7 6666 888 888 5 1 2 5 000 0 0 0 5 00 0 7 0 7 7 7 8888 0 000000 2 222 0 6 000 0 00 2 000 8 22222 0 55 5 0 0000000000000000000000 0 00 8888888888888 5 000 2 0 5555555 2 55555555555555555555555 0 3 8 6 4 11 11 11 11 4444 888 0 1 7 888 2 4444444 11 88888888888888888 7 777 000 0 222222222222222222222222222222222222222222222222222 0 1111 55555 11 0 1111 0 3 00000000 33 77777 7 0 0 7 7 7 3333333 7777 77 0 7 4 00 4 4 8 66 00 2 0 555 555 2 0 0 5555 5 0 2222 0 0 2 88 55555555555 2 0 88 0 0 55555 000 2 33 33 0 0 000000 000 0 0 0 00000 0 0 0 55 333 3 0 00000000000000000000 0 00000 0 55 555 0 0 5 00 000 0 0 00 0 0 0 0 00000000000000000000000000000000 0 0 0 0 00 0 0 0 5 00 0 0 0 000 0 00 000000000000000000 0 0 0 0
consensus : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTCTGGNACATGGTTGACTTCTG--GA--TCGGCTT-CTAGGTTNACTTCTGGGACATGGTTGACTTCTGGA--GACAT--GGTTGATTTCTGGNACAT-G--TT-NACTTCCGGGTNGACTTCTG-GGACATA--------GCNGACTTCTAGGTAGATGCNTTAG--TTGATTTCTG------GGTCGACTTCTGGGAAATGGTTGACTTCCGAATTGACTTCTGGAATATATT--TGACTTT-AATTCTTTGATGCCGTATATAATATACAGTTAAGTTTTTAAACACACTGTTAAGACCATTTAAAACTACATA--------TCAG-AAAATACCAGTATTCTGTTTAGAGTTGTTGTTTCGCTACTATGTTAATGTCGGTACAATAACGTCGATTGGTATGTTTACAATCTCATATAGAGAGGCTAAAACAATTTAATTANAAAGATAAATA-TATCAGGAAGAATAGTCA--GACATTGTGTAACAGAAAACACAACATTTTGATT-ACACTC--GACGAAATCAAAATGAGATTAACTTACCTATTATCCAAATCTCGATTATCCCATCTTCAC------------CAACATGTAGATAATNTCTAGTCCAG------NA-CCGATTCTTCATCATCA---TCCATTACACATCTTCATCACCTGATTTATCTCNATCTTCAGTGTCATCGGTGTCATCCATAACATTACCTGATACTTCCACACACCAACTACCATCACTT-T--T--CCAT------CAT---CATCTTTATNATCA-ACGCTNTTATCATCGTCATCATCAATCACC--TATCATCGGCATCATCTGCAGTTTCATTG-ACACCATCCT---TAAC-A-T-GCCNGATACCTTCT-T-TTCATCG-CA--ATCA-T---------CATCGTTATC----G-C--CAA----C---ATCATCGTCATCGTNA----TCATCAT---CATCATCATCAGCAGCA--AACA--CTCTTGTGTCCAGTAAT----ACCT-CCATCTCCAGNTCCATTGACACCATCCTAGCATTAAA----C-AATACCTTATTATCNTTACCATCATCAT-----------CATCAGCAGCAGCAGTA-TA--TA-TATCTTNATCCGTCCAGTATTATCTCCATCTCGAGTTCCATTGACGCCATTCTTACAGTACTTTGATACAACGTTAT-CGT----TATCATCAT---CATC---ATNATCACCATCATCATCGTCATCGTAATCATCTCATCCGTCCAGTGTTATTTCCATTTCAAGTTTCATTGGTGCCATTCTAACATTACCTTTTCCCACTTTATCCCTACCATCATTTTTATCGCCAACATGATCTTCANTGCAATCATCNTCACCANCAGCATACATCTTCATCCGTCCANNGTTATCTCCATCTCNAGTTTTATCGNCGCCGTTCTAACATC-GCCTTNTACCACC----TTATCGTTAC--TC-ATCATTCTTATCATCA---ACATCATC-AT--CGTAATCATCAT---CATCAGCAGC---A-TACATCNTCATCCATCCATCATTATC-TC-----C-CATC-TCA----AGTA-CCGTTGACGT-CATC----CT------TACATTANCC--GATACCAGC-------TTATTCTTA------CC--ATCA---------ACANCATCATCACCAACATCATCATCA-CTACA--A--TCAT--CATCG--TC----ATC---ATCANCAGCAGCAGCAGTAGCAGCAGCAT-------CATG-TATCTTC-AT--GCGTCTAGT---ATTATCT-C---CATC--TCCAGTT-TTATCGNC-----ATC-AT--TCT------A-AC--ATCACC-T-------NAT-A-TC---ATCAT-----CATCATCATCATCGTC-ATCATCATC---GTCATCANCAGCAGCA----TAT-TCTTCATC-CATTA--AGTATTATCTCCATNTCCAGTCCNATCGACACCGTCATAACATTACCTTAT-------ATCACTT-NA-ACTTACCATCGNCATCNTTACCACCAACGTCATCGCCACCGTCGTCGTCGTCGTCATCGCCAGCGNCA--GCAGCAGCANCAT--ACATCTTCACCGATCCACCATTATC-TCCNTNTC-CAGCNTCATTGCCACCATC-TTAAC-ATTACCT-ATACCA-GCTTATACT-TATCAACANCAT--CANCACCGC--TACTCATCATCATCATCAG--CAGCAGCAGCAGCAGCATTAT--ATATCTTCATC--CATCCANTATAACCTCCATCTCTANTNCCATTGNCACCGATTNTGACCATNACCTGATACCATCTTAATC-TTANCATCTTGTCC---GT----AT-C-CAA---CATCATCATNATCATCATCAGCAGCAGCAGCAGCAGCGTAACCACCATCTTNACCATTATCCAGTATTTTCTCCATCTCCAGTCCAATTGACCCAATTCTAAATTTACCTGATACCACCCAATACTTACAACCATCATCCTTATCACCAACATCATCATTAATGTTATTACCATCAACAGCAGCAGCATATATCTTCACCCGTCCAGTATTTTNTNTCCNTCTCCGGTCCNNTTGACACCATCCTAGACATNACCTNATATCACCTTATACTTACCATCNNCATCCNTATCACCNACATCCTCATCACNGTT-----GNNNNNNNNNNNNNNNNNNNNNNNNNACAACAACAACAGCAGCAGAANATATCTTCAACCAGTCCAGTATNATCTCNNTCTNCAGTCCCANTNACGCCATCCGAACATAACCNNACACNANCTTATACTTACCANCTGTATCCATCAACACTGGCATTCTTATGACTGTGATCATCATCATCATCAGCAGTAGCAGNAGCATATACNTTCATNCGTCNAGTATTA
Reference ( family-1427 ) : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTCTGGNACATGGTTGACTTCTG--GA--TCGGCTT-CTAGGTTNACTTCTGGGACATGGTTGACTTCTGGA--GACAT--GGTTGATTTCTGGNACAT-G--TT-NACTTCCGGGTNGACTTCTG-GGACATA--------GCNGACTTCTAGGTAGATGCNTTAG--TTGATTTCTG------GGTCGACTTCTGGGAAATGGTTGACTTCCGAATTGACTTCTGGAATATATT--TGACTTT-AATTCTTTGATGCCGTATATAATATACAGTTAAGTTTTTAAACACACTGTTAAGACCATTTAAAACTACATA--------TCAG-AAAATACCAGTATTCTGTTTAGAGTTGTTGTTTCGCTACTATGTTAATGTCGGTACAATAACGTCGATTGGTATGTTTACAATCTCATATAGAGAGGCTAAAACAATTTAATTANAAAGATAAATA-TATCAGGAAGAATAGTCA--GACATTGTGTAACAGAAAACACAACATTTTGATT-ACACTC--GACGAAATCAAAATGAGATTAACTTACCTATTATCCAAATCTCGATTATCCCATCTTCAC------------CAACATGTAGATAATNTCTAGTCCAG------NA-CCGATTCTTCATCATCA---TCCATTACACATCTTCATCACCTGATTTATCTCNATCTTCAGTGTCATCGGTGTCATCCATAACATTACCTGATACTTCCACACACCAACTACCATCACTT-T--T--CCAT------CAT---CATCTTTATNATCA-ACGCTNTTATCATCGTCATCATCAATCACC--TATCATCGGCATCATCTGCAGTTTCATTG-ACACCATCCT---TAAC-A-T-GCCNGATACCTTCT-T-TTCATCG-CA--ATCA-T---------CATCGTTATC----G-C--CAA----C---ATCATCGTCATCGTNA----TCATCAT---CATCATCATCAGCAGCA--AACA--CTCTTGTGTCCAGTAAT----ACCT-CCATCTCCAGNTCCATTGACACCATCCTAGCATTAAA----C-AATACCTTATTATCNTTACCATCATCAT-----------CATCAGCAGCAGCAGTA-TA--TA-TATCTTNATCCGTCCAGTATTATCTCCATCTCGAGTTCCATTGACGCCATTCTTACAGTACTTTGATACAACGTTAT-CGT----TATCATCAT---CATC---ATCATCACCATCATCATCGTCATCGTAATCATCTCATCCGTCCAGTGTTATTTCCATTTCAAGTTTCATTGGTGCCATTCTAACATTACCTTTTCCCACTTTATCCCTACCATCATTTTTATCGCCAACATGATCTTCANTGCAATCATCNTCACCANCAGCATACATCTTCATCCGTCCANNGTTATCTCCATCTCNAGTTTTATCGNCGCCGTTCTAACATC-GCCTTNTACCACC----TTATCGTTAC--TC-ATCGTTCTTGTCACCA---ACATCATC-AC--TATAATCATCAT---CATCAGCAGC---A-TATATCTTCATCCATCCATNATTATC-TC-----C-CATC-TCA----AGTA-CCGTTGACGN-CATC----CT------TACATTACCC--GATACCANC-------TTATTCTTA------CC--ATCA---------ACANCATCATCACCAACATCATCATCA-CTACA--A--TCAT--CATCG--TC----ATC---ATCAACAGCAGCAGCAGTAGCAGCAGCAT-------CATG-TATCTTC-AT--GCGTCTAGT---ATTATCT-C---CATC--TCCAGTT-TTATCGNC-----ATC-AT--TCT------A-AC--ATCACC-T-------NAT-A-TC---ATCAT-----CATCATCATCATCGTC-ATCATCATC---GTCATCANCAGCAGCA----TAT-TCTTCATC-CATTA--AGTATTATCTCCATNTCCAGTCCNATCGACACCGTCATAACATTACCTTAT-------ATCACTT-NA-ACTTACCATCGNCATCNTTACCACCAACGTCATCGCCACCGTCGTCGTCGTCGTCATCGCCAGCGNCA--GCAGCAGCANCAT--ACATCTTCACCGATCCACCATTATC-TCCNTNTC-CAGCNTCATTGCCACCATC-TTAAC-ATTACCT-ATACCA-GCTTATACT-TATCAACANCAT--CANCACCGC--TACTCATCATCATCATCAG--CAGCAGCAGCAGCAGCATTAT--ATATCTTCATC--CATCCANTATAACCTCCATCTCTANTNCCATTGNCACCGATTNTGACCATNACCTGATACCATCTTAATC-TTANCATCTTGTCC---GT----AT-C-CAA---CATCATCATNATCATCATCAGCAGCAGCAGCAGCAGCGTAACCACCATCTTNACCATTATCCAGTATTTTCTCCATCTCCAGTCCAATTGACCCAATTCTAAATTTACCTGATACCACCCAATACTTACAACCATCATCCTTATCACCAACATCATCATTAATGTTATTACCATCAACAGCAGCAGCATATATCTTCACCCGTCCAGTATTTTNTNTCCNTCTCCGGTCCNNTTGACACCATCCTAGACATNACCTNATATCACCTTATACTTACCATCNNCATCCNTATCACCNACATCCTCATCACNGTT-----GNNNNNNNNNNNNNNNNNNNNNNNNNACAACAACAACAGCAGCAGAANATATCTTCAACCAGTCCAGTATNATCTCNNTCTNCAGTCCCANTNACGCCATCCGAACATAACCNNACACNANCTTATACTTACCANCTGTATCCATCAACACTGGCATTCTTATGACTGTGATCATCATCATCATCAGCAGTAGCAGNAGCATATACNTTCATNCGTCNAGTATTA
gi|1 : TTCTGAGGAC------------CGCATCTCCACGTACATGCGTAAAAATTG--TTCTGAGATATGGTTGACCTTT----AA--GTCGACTTCTGTGTTTACTTCTGGAACATGGT--TGATTT
gi|1 : tgtTTCTGAGATATGGTTGACCTTTA--AG--TCGACTT-CTGTGTTTACTTCTGGAACATGGTTGATTTCTGAA---ACAT--GGTTGACTTCTGGAACAT-G--TT-TTTTTCTGGATAGACTTCTG-G-ACATA--------GCAGACTTCTAGATAGATGCCTTAG--TTGATTTCTT------GGTCGATTTCAGGGAAGTGGTTGACTTTCAAATTGACTTCTGGAATATATT--TGACTTTCAATTCTTTGATACCATATATAATATACAAT---GTTT--AAACACACTGTTAAGACCATTTAAAACTACATAATATTTTATCAGTAAAATACCTGTATTCTTTTTAAAGTTGTTGTTTCACTACTATGTTAATGTCGGTACAATTATGTTGACTGGTATGCTTACAATCTCATATAGAGAGGCTAAAACAATTTAATTAGAAAGATAAATA-TATCAGGAAGAATAGTCA--GACATTGTGTAACAGAAAACACAACATTTTGATT-ACATTC--GACAAAATCCTATTAAGATTAACTTA----TTATCCAAATCTCGATTATCCCATCTTCACCAACAGCTTCACCAACATGTAGATAATGTCCAGTCCAG------CAACCAATTCTTCATCACCA---TCCATTACACATCTTCATCACCTGATTTATCTCAATCTTCAGTGTCATCGGTGTCATCCATAACATTACCTGATACTTCCACACACTAACTACCATCACTT-T--T--CCAT------CAT---CATCCTTATGATCA-ACACTTTTATCATCATCATCATCAATCACC--TATCATCAGTATCATCTGCAGTTTCATTG-ACACCATCCT---TAACAA-T-GCCCGATACCTTCT-T-TTCATTG-CA--ATCA-T---------CATCCTTATC----A-C--CAA----C---ATCATCATCACTGTAA----TCATCAT---CATCATCATCAGCAGCA--AACA---TCTTGTGTCCAGTAAT----ACCT-CCATCTCCAGCTCCATTGACACCATCCTAGCATTAAA----CAAATACCTTATTATCCTTACAATCATCAT-----------CATCAGTAGCAGCAGTA-TA--TA-TATCTTGATCCGTCCAGTATTATCCCCATCTCCAGTTCCATTGACACC-TTCTTACAGTAC-TTGATACAACGTTAT-CCT----TACCATCAT---CATT---ATGATCACCAACATCATCATCACTGTAATCATCTCATCCGTCCAGTGTTATTTCCATTTCAAGTTTCATTGGTGCCATTCTAACATTACC-TTTCCCACTTTATCCCTACCATCATTTTTATCGCCAACATGA---TCACTGCAATCATCATCACCATCAGTATACATCTTCATCCGTCCATGGTTATCTCCAACTCAAGTATTATTGACACCATTCTAACATT-TCCCGGTACCACC----TTATTCTTAC--TC-ATCATTCTTATCACCA---ACATCTTC-AC--TGCAATCATCAT---CATCAGCAGC---A-TGTATCTTCATGCGTCTAGTATTATC-T------C-CATC-TCC----AATT-CTATTGACAA-CAAC----CT------AACATTACCA--GATACCAGC-------TTATTCTTA------CC--ATCA---------ACAACTTTATCGCCAACATCATCATCA-CTGCA--A--TCAT--CATCA--TC----ATT---ATTAGCAGCAGCAGCAGTAGCAGAAGCAG-------CATG-TATCTTT-AT--GTGTCTAGT---ATTATCT-C---CATC--TCCAGTT-TTATTGAC-----AGC-AT--CCT------A-AC--ATTACC-T-------GAT-A-CC---ACCTT-----CATCACCATCACTGTT-ATCACCATC---ATCATCATCAGCAGCA----TATCTCTTCACC-TATTA--AGTACTATCTTCATCTCCAGTTCACTTGACACCAGCCTAACATTACCTGAT-------ACCACCTAAA-ACTTACCATCATCATCTTTACCACCAACACCATCACCACTGTTATCTTCATCATCATCACCAGCTTCA--GCAGCAGCAGCAT--ATATCTTCACCTATCCAGTATTATC-TCCTTCTC-CAGTCTCATTGACACCATC-CTAAC-ATTACCTGATACCA-GCTTATACT-TACCAACATCAT--CAACACTGTGATACTCATCACCATCATCAG--CAGCAGCAGCAGCAGCATTAT--ATATCTTCACC--TATCCAGTATAACCTCCATCTCTAGTCCCATTGAC-CCAATTCTAA-CATTACCTAATACCACCTTAAAC-TTACCATCTTGTCC---AT----ATAC-CAA---CATCATTATCATCATCATCAGGAGCAGCAGCAGCAGCATA-----TATCTTTACC--TATCCAGTATTTTCTCCATCTCCAGTCCAATTGACCCAATTCTAAATTTACCTGATACCACCCAATACTTACAACCATCATCCTTATCACCAACATCATCATTAATGTTATTATCATCAACAGCAGCAGCATATATCTTCACTTATCCAGTATTTTTTCTCCATCTCCAGTCCATTTGACACCATTCT-GACATTACCTGATATCACCTTATACTTACCATCATCATCCTTATCATCTACATCCTCATCACTGTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTATATCTTCAACTA-TCCAGTATAATCTCATTCTCCAGTCTCAATGATGCCATCCTAACATAACCTGACACAAGCTTATACTTACCAAC---AT-CATCAACACTG-----------------------ATCATCATCAGCAGTAGCAGCAGCATATATATTCATGTATCGAGTATTActgaaacatggttgacttctggaacatgtttttttctggatagacttctggacatagcagacttctagatagatgccttagttgatttcttggtcgatttcagggaagtggttgactttcaaattgacttctggaatatatttgactttcaattctttgataccatatataatatacaatgtttaaacacactgttaagaccatttaaaactacataatattttatcagtaaaatacctgtattctttttaaagttgttgtttcactactatgttaatgtcggtacaattatgttgactggtatgcttacaatctcatatagagaggctaaaacaatttaattagaaagataaatatatcaggaagaatagtcagacattgtgtaacagaaaacacaacattttgattacattcgacaaaatcctattaagattaacttattatccaaatctcgattatcccatcttcaccaacagcttcaccaacatgtagataatgtccagtccagcaaccaattcttcatcaccatccattacacatcttcatcacctgatttatctcaatcttcagtgtcatcggtgtcatccataacattacctgatacttccacacactaactaccatcacttttccatcatcatccttatgatcaacacttttatcatcatcatcatcaatcacctatcatcagtatcatctgcagtttcattgacaccatccttaacaatgcccgataccttcttttcattgcaatcatcatccttatcaccaacatcatcatcactgtaatcatcatcatcatcatcagcagcaaacatcttgtgtccagtaatacctccatctccagctccattgacaccatcctagcattaaacaaataccttattatccttacaatcatcatcatcagtagcagcagtatatatatcttgatccgtccagtattatccccatctccagttccattgacaccttcttacagtacttgatacaacgttatccttaccatcatcattatgatcaccaacatcatcatcactgtaatcatctcatccgtccagtgttatttccatttcaagtttcattggtgccattctaacattacctttcccactttatccctaccatcatttttatcgccaacatgatcactgcaatcatcatcaccatcagtatacatcttcatccgtccatggttatctccaactcaagtattattgacaccattctaacatttcccggtaccaccttattcttactcatcattcttatcaccaacatcttcactgcaatcatcatcatcagcagcatgtatcttcatgcgtctagtattatctccatctccaattctattgacaacaacctaacattaccagataccagcttattcttaccatcaacaactttatcgccaacatcatcatcactgcaatcatcatcatcattattagcagcagcagcagtagcagaagcagcatgtatctttatgtgtctagtattatctccatctccagttttattgacagcatcctaacattacctgataccaccttcatcaccatcactgttatcaccatcatcatcatcagcagcatatctcttcacctattaagtactatcttcatctccagttcacttgacaccagcctaacattacctgataccacctaaaacttaccatcatcatctttaccaccaacaccatcaccactgttatcttcatcatcatcaccagcttcagcagcagcagcatatatcttcacctatccagtattatctccttctccagtctcattgacaccatcctaacattacctgataccagcttatacttaccaacatcatcaacactgtgatactcatcaccatcatcagcagcagcagcagcagcattatatatcttcacctatccagtataacctccatctctagtcccattgacccaattctaacattacctaataccaccttaaacttaccatcttgtccatataccaacatcattatcatcatcatcaggagcagcagcagcagcatatatctttacctatccagtattttctccatctccagtccaattgacccaattctaaatttacctgataccacccaatacttacaaccatcatccttatcaccaacatcatcattaatgttattatcatcaacagcagcagcatatatcttcacttatccagtattttttctccatctccagtccatttgacaccattctgacattacctgatatcaccttatacttaccatcatcatccttatcatctacatcctcatcactgttnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntatatcttcaactatccagtataatctcattctccagtctcaatgatgccatcctaacataacctgacacaagcttatacttaccaacatcatcaacactgatcatcatcagcagtagcagcagcatatatattcatgtatcgagtatta
gi|10 : tgtttctgaggaccgcatctccacgtacatgcgtaaaaattgATCGACATCGT-ATAACAATACTTTATCGACATAGTCATTG-CA-AACTATTATCGACATCGTCACTGCCAATGCCATTGCCACCGTTTTCGACATCGTAATTGTCATCGTCATTGCTG--ACGTTATTGACATTTTCATTGA--CACCATTATC-TCCAT-------CGTTATTGCCACCGTTATTGAT-ATTGTCA-ATATCA---TTG---T-TATCGACAGCGT--CATTGCCAT--T-TTCAT
gi|11 : ttTCATCATCATCGTCGTTGTCGTCGTCGCCGCC-GNNNNN--NNNNNNNNNNNNN--NNNNNNNNNNNNNNNCATTATTGTCATATTTATCACAGCATCATAATCATCATT-TTAAT-ATTAACT-ATACCGTGATCATA----ATCAATATCATACCATTACCAC---AGTCATCATCATTATCGGTATAGCAGCAACATCAATATTAT--ATAGCAGCATC--t
gi|12 : aCATTGTTGATTTCTT--GA--TTAACTA-CTAGGCTGACATCTTAGATATGGTTGACTTCTGGGCTGGCATCTGATATATTGTTGGTTTAT-GGTTT-TACTCCCGGGTTGACTACTA-GGATATGACTTAGAGGCTGACTTCT-GGTA----CATTA---TTGATTTCTG------AAACAACTTCTGGGAAATGGTTGACTTCTGGGCTGATATCTGG--TACATTGCTGATTTagaagacac
gi|13 : AACATCATCATCATCTACA--AATTCATGTTACCT--TCTAACATC---ATCTACATCATCAGCATTATATTCAACAT-------CATGATATCTTC-CA--ACATCTA-T---ATCATCA-CTATCATC--TTCAATT-TCAT-GAT-----ATC--T--TCT------A-AT--ATCAACAT-------TATCA-TC---TTCAA-----CATCATGATAATCTTCCAACATCATCTAAATCATCACCATCA-----------TCTTCA
gi|14 : ccttgCAACAACATCAACACCACTATCAAC-----CATCAGCAATAGCACCA--GCAGCAGCACCAC---CACCGCCACCA--CCACCGTTACC-TCCAAGAC-CACCCTCA---CCACAATC-TCAACCACCACC----ACCA-AC--A-ACAATAACAACAACAT--CAACACCAC--TACCAACCATCATCAGCAG--CAGCAGTACCAGCAGCaca
gi|15 : TCATCA-TTACA--A--CC----CATAGCTTC----ATC---ATCAACAGCAGCATCAATAGCATTCTCAT-------CAT--CATCAAC-ATAAGTGGC-AGTGACATTATTT-CA--CACC--ATCAG-------CAGC-----ATCAAT--TC----------C--ATTGTA-T-------AA--A-TC---ACCAC-----CACCATCATCA--GTC-ATCATCATT---GTCATCA
gi|16 : tTCATCATCATTATCAGCAGCAGCA
gi|16 : TCATCATC---ATTATCAGCAGCAGCA--------TCTTTAT--CATTA--CTTTTTATCtctttatcattactttttatcattatcattattatttttgttatcattatcattaccatgatgatggtgatggtgatggtgatgatcatgatgatacagtacgattattataa
gi|16 : TCA-T---------CATCATTATC----A-G--CAG----C---AGCATCTTTATCATTACTTTTTATCAT---TATCATTATTAattatcattattatttttgttatcattatcattaccatgatgatggtgatggtgatggtgatgatcatgatgatacagtacgattattataa
gi|16 : AT-CGTACTGTATCATCATGATCATC---ACCATCACCATCACCATCATCATGGTAATGATtttttgttatcattatcattaccatgatgatggtgatggtgatggtgatgatcatgatgatacagtacgattattataa
gi|18 : tcatcatcattatcagcagcagcatctttatcattactttttatcattatcattattatttttgttatcattGTTGTTATCATC-----AGT-ATAATC-------A-AT--ATTA---T-------AAT-T-TC-----TAT-----CATCATAACCATGATC-ATCATTATT---GTCATCATCAGCA-----------TCCTCAT--CATTAATAGTATTATtattataa
gi|19 : ggctgctaaatttaatatcATCGCTATCACTAGCTTTTTCGTCAACGGT--AGCATC-AT-TTACATCA------TTATTGTTA---TC-GTCGTTGTCGGCGTCA---TCATCATC-AT--CAAAATCATCAT---CATCAGCAGC---A-tatt
gi|2 : catcaccCATGTTTG-CTTCTG--GAACTTGGTT-----GGTTAACTTCTGGAACATGGTTGAATTCTGGA---ACAT--GGTTGACTTCTGAAACATAG--TT-GACTTCTGGATAGACTTATT-GGACATA--------GCAGACTTCAAGGTAGATGCCTAAG--TTGATTTATA------GGTCGATTTCAGGGAAATAGTTGACTTTCAAATTGACTTCTGGAATATATT--TGACTTTGAATTCTTTGATGCCATATATAATATA----TAA-TGTTTGAACACACTGTTAAGACCATTTAAAA-----------------------ATACCAGTATTCTGTTTAGAGTTGTTGTTTTGCTACTATGTTAATGTCAGTAAAATAATGTCAATTGGTATGTTTACAATCTCATATAGAAAGGCTAAAACAATTCAATTAGAAAGATAAATA-TATCAGGAAGTATAGTCG--GACATTGTGTAACAGAAAACACAACATTTTGATT-ACACTC--ATCAAAATCAAAATGAGA-----TTACCTATTATCGAAATCTCGATTATCCCATCTTCAC------------CAACATGTAGATAATAT-TAGTCCAGTCCTGCAA-CCAATTCTTCATCATCA---TCCATTACACATCTTCATCACCTGATATATCTCCATCTTCAGTGTCATCGGTGTCATCCATAAC----------ACTT----------ACTACCATCACAT-T--T--CCAT------CAT---CATCATTATGATCA-ACACTTTTATCA---TCATAATCAATCACC--TATCATCAGTATCATCTGCAGTTTCATTG-ACACCATCCT---TAAC-ATT-ACCCGATACCTTCT-T-ATCATTA-CA--ATCA-T---------TATCCTTAGC----G-C--CAA----C---ATCATCATCACTGTAA----TCATCAT---CATCATCAGCAGCAGCA--AACATCTTCTTGTGTCCAGTAAT----ACCT-CCATCTCCAGTTCCATTGACACCATCCTAGCATTACC----T-AATACCTTTTTATCCTTACCATCATCATTTTATCACCAACATTATCATCATTAGCA-TA--TA-TATCTTTATCCATCCAGTATTATCTCCATCTCGAGTTCCATTGATGCTATTCTTACAGTAC-TTGATACAACGTTAT-CCT----TACCATCAT---CATT---CTGATCACCAACATCATCTTCAATGTAATCATCTCATCCGTCCAGTGTTATTTCCATTTCAAGTTTCATTGGTGCCATTCTAACATTACCTTTTCCCACTTTATCCCTACCATCATTTTTATCACCAACATGATCTTCAATGTAATCATCCTCATCAGCAGCATACATC-TCATCTGTCCAGTATTATTTCCATTTCCAGTTTCATTGGTGCCATTCTAACATT-GCCTTTTACCACT----ATATCCTTACCATT-ATCATTCTTATCACCA---ACATCATC-AC--TATAATCATCATCACCATCAGCAGCAGTA-TACATCTTCATCCATCCATGATTATC-TC-----C-CAAC-TCA----AGTA-TCGTTGACGC-CATT----CT------TACATTACCC--AATACCACC-------TTATTCTTA------GC--AT------------TATCATCATCACCAACATAG--A-CA-CTGCA--A--TCAT--CATCA--T----------------CAGCAG-------------------------CATG-TATCTTC-AT--GCATCTTGT---ATTATGT-C---CATC--TCCAGTT-TTATTGACCGTATACC-AC--TTT------ATACTTACCATC-TGTATCCATAT-A-CCAAAATCCT-----CATCACTGTGATCATC-ATCATCATC---ATCATCAACAGCAGCAGCAGTATATCTTCATC-CATCC--AGTTTTATCACCATGTCCAGTCCCATTGACACCATCATAGCATTACCGTAT-------ATCACTT-TATACTTACCATCTGTATCCATA-TACCAACATCat
gi|20 : acactccttacctgaatctatacgttggcaatcagtggatcccgtatgtaaaactttcgaaggactgtgcttctgtttctgaggaccgtCC------A-GC--ATCACCAT-------CAT-AATA---ATCAT-----CATCATCATAATCGTT-GTCGTCGTC---GTAATGAACAGCCGCA----TAT-T-TTCAT----TTA--TATATTAACT
gi|21 : TTCTGGCACATGGTAGACTTCAG--AA--TTGGCAT------TTTATTTCTGTCACATGGTAGACTTCAGTATCGGCAT----TTCATTTCTGGCACAT-G--GTAGACTTCgatatatgattcagttacat
gi|22 : tgtttaatGTTCAATTTGCATTATGTTTAC--TATTTGAATAT----TCATTCGT-----ATCATCAT---CATC---ATCATCATCATCGACATTGTCTTCATAATCATCTC
gi|23 : atgtTATTACCATCATCAGCAGCAGCATATcatgag
gi|23 : ATTACC---ATCATCAGCAGCAGCA----TAT-TTATCATTGCATT-------TTATCttatcattgcattttatcattattataactgttgttattactatcattataatcattgttatcgttat
gi|24 : tCATCAGCATTAGCATTA-TCACA--A--TCAT--CATCA--TC----ATCGATATCAACAGCAGCAGCA-TAGC--CACCAC-------CACA-T-TCTAC-Aattattataactgttgttattactatcattataatcattgttatcgttat
gi|25 : AGAAGTAGTAGTAGTAGCATGTGTTGTCAT--TAACTTC-AT-----TATGGT-----CATTT-T---CATTATTCCATTT-TTATCGCC-----ATT-AT--TGT---------C--ATTACC-acatcaacagcaga
gi|26 : TTCTTAA-----CCTAATCA---------ATACAATCATCAACACCATCACAATCA-CTATA--A--CCAA--CATCA--GC----ATT---ATCATCAGCAGCAGCAACAGCAGAAGatc
gi|27 : tCATTTTT----TGCTTTTAT-TATCATTAT-CAG----CATCATCAT---CATCATAATAATCACCATCATCATAATCACC
gi|27 : TTAT-CAT----TATCAGCAT---CATC---ATCATCATAATAATCACCATCATCATAATCACC
gi|28 : cattttttgcttttaATAC-ATCATAATCATTATGATCTTGATC---GT----G-----------ATAATCACAATCATCATCAGCAGCAACAGCAGCA
gi|29 : T----TATCATTAT---CATC---ATGCTCAGCATCATCACTATCATGAAAATCATTTta
gi|3 : ttaTTCTGAGGA--TCGTCTTTCTAGGTTGATCTCTGGGACATGGTTGATCTCTGG---GACAT--GGTTGATTTCTGGGACAT-G--------------GTTGACTTCTG-GGATACA--------GCCGACTTCT-----------TT-G--TTGACATCTG------AGTCAACTTCTGGGACATGGTTGACTTCTGAATTAACTACTGGAATATATC--TGA---------------TGCCGTATAAAATATACAGTTAAGTTTTTAAA---ACTGTTAAGACCAATTAAAACTACATA--------TCAGGAAAATACCAGAATACTGTTTA-AGTT-TTGTTTTGCTACTATGTTAGTGTCGGTACAATAACGCCAATAAGTATGTTTGTAATCTTATGTAGAGA--CTAGAGCAATTTAATTACAAAGATAA--A-TATTATGAAGAATGG--A--GATATTattaatattaatatc
gi|31 : catactccttacctggatctatacctggaactataggtatgtggccaatcagtggatcccaaatgtaaagctttcaaatgaatggacttctgt--ATCG-T---------CGTCGTGGTC----GTC--CGGTTGTC---GTTGTCGTCGTCGTCA----TTATCAT---CATCATCATCAGC
gi|32 : AGCAGCAGCAGCAGCAT-------CAT--TATCCTCGAT--GT------T---ATTATC
gi|33 : GTCGTCGTCGTCGTCGTTGTTGTCATCATCATCAGCAACA--GCAGCAGCAGCAataaaattataattatcact
gi|4 : CAACAGAAGCAGTAGATATCTTCATCCGTCCAGTATT--ATATCCTTCTCGGGTCCCATTGACACCATCCTAG-CATGACTTTATATCACTTTATACTTACCATCTGTATCCATAT-ACCAACATCCTCATCACAGT------GNNNNNNNNNNNNNNNNNNNNNNNNNACAACAACAACAGCAGCAGAAGATATCTT-AATCAGTCCAGTATTATCTCCATCTGCAGTCCCATTTACACCATCTGAACATAACCGTATATCACTTTATACTTACCATCTGTATCCAT--ATACTAGCATTCTTATGACTGTGATCATCATCATCATCAACAATAACAGAAGTATATACCTTCATCCGTCCAGTATTAg
gi|4 : aAT----ACTTACCATCTGTA--TCCAT-------ATACTAGCATT--------------CTTATGACTGTGATCATCATCAT-----------CATCAACAATAACAGAAGTA--TA-TACCTTCATCCGTCCAGTATTATATCCATCTCGAGTCCCATTGACACCAtatccatctcgagtcccattgacacca
gi|5 : acaacagaagcagtagatatcttcatccgtccagtattatatccttctcgggtcccattgacaccatcctagcatgactttatatcactttatacttaccatctgtatccatataccaacatcctcatcacagtgnnnnnnnnnnnnnnnnnnnnnnnnnacaacaacaacagcagcagaagatatcttaatcagtccagtattatctccatctgcagtcccatttacaccatctgaacataaccgtatatcactttCACCA-TTACCATCATTT-TAATGACCATACTGATCATTCTCATCTTTACTGTCAGATGCTCT-A-CATAATCATCAGCAG-CAGCAGTAACAGCAGCATTATNNNNNNNNNNNNNN-NNNNNNNNNN---NNNN-N-N-NNNNNNNNNNNNNN-N-NNNNNNN-NN--NNNNNT---------TGTCAGGAGCAGCAG-CAGCAG----C---ATGATCAACATCTTGA----TCAACAT---CATTATCATCATTATCATTATCA--CTGTTATGACCA-TAATGATCATTT-TCATCTTTACATC--TTGTC-----CCTGG--TTGAAATCTC-AATATC--ATCATCATTATCATCATCAT-----------CATCAGCAGCAGCAGTG-TAACCACCATCTTAATC
gi|5 : cattatcattatTCAG--GAGCAGCAGCAGCAGCATGATCAACATCTTGATCAACAT-CATTAT------CATC---ATTATCATTATCACTG-TTATGACCATAA--TGAT--CATTTTCATC-TTTACATCTTGTCCCTGGTTGAAAT-CTCAATATCATCATCATTATCATCATCATCATCAGCAGCAGCAGTGTAACCACCATCTTAATCATTATCattatcatca
gi|6 : cattatcattatcaccattaccatcattttaatgaccatactgatcattctcatctttactgtcagatgctctacataatcatcagcagcagcagtaacagcagcattatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnttgAACAGCTGCTTTCTATTATCAACATCATCACTAC--TTTATCTTTCTAGTCATCA---GCATGATCTAT--TTTTATCAACAT---CATCATTACC---ACTATATCATCATC-ATC-ATCATTATCGTC-----CTCAT----A----AGCAGCTGATTATGTGTAT------T------TGTATTAGCT--GCTATTAAT-------TT--TGTT--------C--ATAA---------ACATCATCATCT------TCATTATGA-CTATATCA--TCAT--CATTG--TC----ATC---ATCATCATCCTCCTCATTAGCAGCTG-AT-------TATG-TGTATTT------------GT---ATTAGCTGC---TATT-----AATT-TTGT----------TC-AT--A--------A-AC--ATCA---T-------CATCA-TC---ATTATGACTATATCATCATCATTGTC-ATCATCATC---CTCCTCAatca
gi|7 : atctcaaccatcagcCAAAGTTAT-TGG----TATTGTTAT----GTC---ATCATAATTATCATGATTGACATCGTAATtt
gi|7 : attctTATTGTTAT-GTCATCAT-AATTATC---ATGATTGACATC----GTAATGTCGT-----A--ATCAT---TATC-A-TCGCTGGTTACATT--------ATCA-TA--TTCA-T---------CATCACT-------G-C--TAA----C---ACCATCGTCATCGTAA----T-ATCATAGGCATCATCAgtcgtaatcattatcatcgctggttacattatcatattcatcatcactgctaacaccatcgtcatcgtaatatcataggcatcatcaaaattacagtgtacatcaacttagacaacagtgtcagatttattattaattgcattatcataagtaatgacatcgttatcatcgacatcatcaccaatatattcattatcgtcataataattagcatcgtcaataacatcg
gi|7 : attctcaaagttattggTATTGTTATG-TC-ATCATAATTATCATGATTGACATCGTA-ATGTCGTAATCATTAT---CATC-GCTGG---T-TACATTATCAT--ATTCATCATCACT-GCTAACAC-CATCGTCATCGTAATA-TCATAGGCAT-CATCAAAATTACAGTGTACATCAACTTAGACAACAGTGTCAGATTTATTATTAATTGCATT--ATCATAAGTAATGACATCGTTATCATCGACATCATCACCA-ATATA--T--TCAT--TATCG--TC----ATA---ATAATTAGCATCGTCAATAACAaaattacagtgtacatcaacttagacaacagtgtcagatttattattaattgcattatcataagtaatgacatcgttatcatcgacatcatcaccaatatattcattatcgtcataataattagcatcgtcaataacatcg
gi|7 : attctcaaagttattggATTATCATCGCTGGT--T--ACAT------TAT---CATATTCATCATCA-CTGCTAACACCATCGTCATCGT-AA-------TATCATAGGCATCATC-AAAATTACAGTGTACATCAACTTAGACAAC-AGT-GTCAGAT---TTAT-TATTAATTG-CATTATCA-TAAGTAATGACATCGTTATC----A-T--CGA----C---ATCATCACCAATATAT----TCATTAT---CGTCATAATAATTAGCA--tcg
gi|8 : attctcaaagttattggtattgttatgtcatcataattatcatgattgacatcgtaatgtcgtaatcACAATTTAATTATGAAGATAGATACTGT--GAAAGAAACGTAAATGGCATTAT-TAA-AGAAAGCA-----TTTT-ATTGACACTCTTGACGAGA--AAAA----ATTAACTTACCTATTATCCAAGTCTTGGCTACCCCAACTTTAT------------CAATATTTGAATGACTTCTAACCCAG------GATCCGATTCTTTACTATCACACTCCATCATACATCTTTATCTACTGGCTTATTTCTATCTTCAGTTTCATCGATGTCATCCATAACATTACTTGtcgtcaataacatcg
gi|9 : CTTCTGT-TTCATCATCA--A-CA-C---------CACCATTATC----A-T--CAA----CAATATCATCACCAACATCA----TTAACAA---CACCATTGTCAACAGCA--A
gi|9 : gTTA------TC--ATCA---------ACAATATCATCACCAACATCATTA------ACA--A---CAC--CATTG--TC----AAC---AGCAACAACAANNNNNNNNNNNNNNNNNN-------NNNN-NNNNNNN-NN--NNNNNNNNN---NNNNNNN-N---NNNN--NNNNNNN-NNNNNNNN-----NNN-NN--NNNNNNNGCA-AC--AACAAT-T-------T-C-A-GC---ATCAT-----TATCATCAACACCACC-ACCATCATC---ATCATcaacaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngcaacaacaatttcagcatcattatcatcaacaccaccaccatcatcatcataattttgtcaagtcttactaaatac
blockSeqs : C A GAAC A TTCTA G G C GCTG CT T A GTTTTA C T . ACTTAGAG A AGATAGATGCCTTAG . A GC C G CAGTTAAG T C C TCAGG G G G G A C C TAAAT G C C G G TT T TG T C . A C TCCTGCAA CAC C . A TAATGA ACTGAT TCT A G G T T T TAA C CAGCAGT T T T C AGA ATT C A ATTAT T TT N AAGTAATGA A AGCAGCAG TTGT AAT T T T CTTT T AGG G TT TCT G GATC A GT C T A ACC C GAAATCTC T C TTTATCACCAA C G AC C T G A AG T A AA T G ACTG GAT ATA C A T TCT A C G . GT T T C TGCT A TCAACA G CCA T G TTG T GT A CAC AGTA T CC C G GCTAACACCATCGTCATCGT G TG CAAAATTACAGTG C TTA C GTCAGAT A ATTGCATTATCATAAGTAATG T C T T TC AT GT CT TAAC GAT A T TTC GTGTTGT GA ATAAGTGGCAGTGAC G TAT ATT G TGACCGTATACCACTTTATACTTACCATCTGTATCCATAT A AAAA GACTA TC C TAAA C G GCAGTATA TG AATAG T G C C CGACATA TAT GA G C T GA A T GT TT N T TGA NNN A A ATCA G G TTGC A C A TGATCATA T G AC T A TAC TAT CA AA . T . . T A T ACTG A C A . AC A T CTGGTTGAAATCTCAATAT A ACCAC A AT A A T G CA AG G T TG A . A A GNNNNNNNNNNNNNNNNNNNNNNNNN G . G T CA G T T G GT C C T TGT C . GCATTCTTATGACTGTGA A C C C
blockSeqs : A AGGA G ACTA A A A ATCG . A . GTAGA T A . . T AGGTAGATGCCTAAG . T . T . TAA T . . . . . . C A . T TCG . . . . . . . . . C . T . GAT . T GTT . . T T . C T T TCG C TCACCT N N . N . ATC N N CTGTT . . . . C GTC . . A C A . C . G . C . . . CA C T T . C ACCT T G . A . . . C A A . T A AT . C . . . G T C G . GCC T CT C TG . A . . . A . AC A C C C TCCCAACTCA . C TCT G C A . A ACCTAATCA C T T . . . . . . . A A ATT . G ATGCATCTTGT . A T . NNNNNNNNNNNNNNNNGCAACAACAATTTC . T . TG . G G G TAT C ACT A . . CA TG C . G GT G C NN . C N N GA . T GAC C A TAAT . . T ACAACAA T T . T A TT C . . C . A GTG T
blockSeqs : . GA G T T C C A . C . TTGA . T . . A GGTACATTA . A . C T . . . A TT . . T C . A C C TG . TTATC . T . T . AGT G A CTTA . . . . G AG . . G T C . T . T . . . . . . . . . . . A . T . . . A A . . . . AA . G . . . C G AT C . A C . T . . . T . A A . . C GTCCTCATA . T T A T G . . TCATCA T A T . . . . . . . A G AGT . A NNNNNNNNNNN . . A . GATATCTTCTAATATCAACATTATC . A . TC . A T G TAT . CAG T A GT G A AC . C C . A . A . . C C . . . TTGT A A . A A AG G
blockSeqs : AA T . G G T G . G . . . . C TTG . T . . A . . . . T . . . . . NN A . NNNN . . . . A GC . . A T G . C . T . . . A . . . A A G . . A . . . G . T CATAA T T T . . . . . . . T A AGA . G CAACATCTAT . . T . CATCAGTATAATCAATATTATAAT . A . TC . G A G . . ATA A G . . T AA . . G
blockSeqs : . . . . . A GC . . G T A . C . A . A . . . C A GCAT A C T . . . . . . . T G AGC . N ATTATGGT . . N . CAGCATCAATTCCATTGTATAA . A . TT . A A . . . . .
blockSeqs : . . . G AT . . A A A . T . . G . . . G A . C . . . . . . . T T AGC . . GATGTT . . . . TCATAAACATCATCATC . A . CC . G G . .
blockSeqs : . . A AT . . A A C . . . . . . C G . . . . . . . . A A NNN . . GT . . . . . . A
blockSeqs : . . . . . . . . . N C . . C
blockSeqs : . . A
blockSeqs : .
blockSeqCons : GG** TA***** GGTGCTTAG******** ****** CACT**** NTTN** C** ACCTCATCA************** TAT***** **
originalCons : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTCTGGNACATGGTTGACTTCTG--GA--TCGGCTT-CTAGGTTNACTTCTGGGACATGGTTGACTTCTGGA--GACAT--GGTTGATTTCTGGNACAT-G--TT-NACTTCCGGGTNGACTTCTG-GGACATA--------GCNGACTTCTAGGTAGATGCNTTAG--TTGATTTCTG------GGTCGACTTCTGGGAAATGGTTGACTTCCGAATTGACTTCTGGAATATATT--TGACTTT-AATTCTTTGATGCCGTATATAATATACAGTTAAGTTTTTAAACACACTGTTAAGACCATTTAAAACTACATA--------TCAG-AAAATACCAGTATTCTGTTTAGAGTTGTTGTTTCGCTACTATGTTAATGTCGGTACAATAACGTCGATTGGTATGTTTACAATCTCATATAGAGAGGCTAAAACAATTTAATTANAAAGATAAATA-TATCAGGAAGAATAGTCA--GACATTGTGTAACAGAAAACACAACATTTTGATT-ACACTC--GACGAAATCAAAATGAGATTAACTTACCTATTATCCAAATCTCGATTATCCCATCTTCAC------------CAACATGTAGATAATNTCTAGTCCAG------NA-CCGATTCTTCATCATCA---TCCATTACACATCTTCATCACCTGATTTATCTCNATCTTCAGTGTCATCGGTGTCATCCATAACATTACCTGATACTTCCACACACCAACTACCATCACTT-T--T--CCAT------CAT---CATCTTTATNATCA-ACGCTNTTATCATCGTCATCATCAATCACC--TATCATCGGCATCATCTGCAGTTTCATTG-ACACCATCCT---TAAC-A-T-GCCNGATACCTTCT-T-TTCATCG-CA--ATCA-T---------CATCGTTATC----G-C--CAA----C---ATCATCGTCATCGTNA----TCATCAT---CATCATCATCAGCAGCA--AACA--CTCTTGTGTCCAGTAAT----ACCT-CCATCTCCAGNTCCATTGACACCATCCTAGCATTAAA----C-AATACCTTATTATCNTTACCATCATCAT-----------CATCAGCAGCAGCAGTA-TA--TA-TATCTTNATCCGTCCAGTATTATCTCCATCTCGAGTTCCATTGACGCCATTCTTACAGTACTTTGATACAACGTTAT-CGT----TATCATCAT---CATC---ATNATCACCATCATCATCGTCATCGTAATCATCTCATCCGTCCAGTGTTATTTCCATTTCAAGTTTCATTGGTGCCATTCTAACATTACCTTTTCCCACTTTATCCCTACCATCATTTTTATCGCCAACATGATCTTCANTGCAATCATCNTCACCANCAGCATACATCTTCATCCGTCCANNGTTATCTCCATCTCNAGTTTTATCGNCGCCGTTCTAACATC-GCCTTNTACCACC----TTATCGTTAC--TC-ATCATTCTTATCATCA---ACATCATC-AT--CGTAATCATCAT---CATCAGCAGC---A-TACATCNTCATCCATCCATCATTATC-TC-----C-CATC-TCA----AGTA-CCGTTGACGT-CATC----CT------TACATTANCC--GATACCAGC-------TTATTCTTA------CC--ATCA---------ACANCATCATCACCAACATCATCATCA-CTACA--A--TCAT--CATCG--TC----ATC---ATCANCAGCAGCAGCAGTAGCAGCAGCAT-------CATG-TATCTTC-AT--GCGTCTAGT---ATTATCT-C---CATC--TCCAGTT-TTATCGNC-----ATC-AT--TCT------A-AC--ATCACC-T-------NAT-A-TC---ATCAT-----CATCATCATCATCGTC-ATCATCATC---GTCATCANCAGCAGCA----TAT-TCTTCATC-CATTA--AGTATTATCTCCATNTCCAGTCCNATCGACACCGTCATAACATTACCTTAT-------ATCACTT-NA-ACTTACCATCGNCATCNTTACCACCAACGTCATCGCCACCGTCGTCGTCGTCGTCATCGCCAGCGNCA--GCAGCAGCANCAT--ACATCTTCACCGATCCACCATTATC-TCCNTNTC-CAGCNTCATTGCCACCATC-TTAAC-ATTACCT-ATACCA-GCTTATACT-TATCAACANCAT--CANCACCGC--TACTCATCATCATCATCAG--CAGCAGCAGCAGCAGCATTAT--ATATCTTCATC--CATCCANTATAACCTCCATCTCTANTNCCATTGNCACCGATTNTGACCATNACCTGATACCATCTTAATC-TTANCATCTTGTCC---GT----AT-C-CAA---CATCATCATNATCATCATCAGCAGCAGCAGCAGCAGCGTAACCACCATCTTNACCATTATCCAGTATTTTCTCCATCTCCAGTCCAATTGACCCAATTCTAAATTTACCTGATACCACCCAATACTTACAACCATCATCCTTATCACCAACATCATCATTAATGTTATTACCATCAACAGCAGCAGCATATATCTTCACCCGTCCAGTATTTTNTNTCCNTCTCCGGTCCNNTTGACACCATCCTAGACATNACCTNATATCACCTTATACTTACCATCNNCATCCNTATCACCNACATCCTCATCACNGTT-----GNNNNNNNNNNNNNNNNNNNNNNNNNACAACAACAACAGCAGCAGAANATATCTTCAACCAGTCCAGTATNATCTCNNTCTNCAGTCCCANTNACGCCATCCGAACATAACCNNACACNANCTTATACTTACCANCTGTATCCATCAACACTGGCATTCTTATGACTGTGATCATCATCATCATCAGCAGTAGCAGNAGCATATACNTTCATNCGTCNAGTATTA
finalCons : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTCTGGNACATGGTTGACTTCTG--GA--TCGGCTT-CTAGGTTNACTTCTGGGACATGGTTGACTTCTGGGG--ACAT--GGTTGATTTCTGGNACAT-GTA-----CTTCCGGGTNGACTTCTG-GGACATA--------GCNGACTTCTGGTGCTTAG--------TTGATTTCTG------GGTCGACTTCTGGGAAATGGTTGACTTCCGAATTGACTTCTGGAATATATT--TGACTTT-AATTCTTTGATGCCGTATATAATATACAGTTAAGTTTTTAAACACACTGTTAAGACCATTTAAAACTACATA--------TCAG-AAAATACCAGTATTCTGTTTAGAGTTGTTGTTTCGCTACTATGTTAATGTCGGTACAATAACGTCGATTGGTATGTTTACAATCTCATATAGAGAGGCTAAAACAATTTAATTANAAAGATAAATA-TATCAGGAAGAATAGTCA--GACATTGTGTAACAGAAAACACAACATTTTGATT-ACACTC--GACGAAATCAAAATGAGATTAACTTACCTATTATCCAAATCTCGATTATCCCATCTTCAC------------CAACATGTAGATAATNTCTAGTCCAG------NA-CCGATTCTTCATCATCA---TCCATTACACATCTTCATCACCTGATTTATCTCNATCTTCAGTGTCATCGGTGTCATCCATAACATTACCTGATACTTCCACACACCAACTACCATCACTT-T--T--CCAT------CAT---CATCTTTATNATCA-ACGCTNTTATCATCGTCATCATCAACACT----ATCATCGGCATCATCTGCAGTTTCATTG-ACACCATCCT---TAAC-A-T-GCCNGATACCTTNTTN--TCATCG-CA--ATCA-T---------CATCGTTATC----G-C--CAA----C---ATCATCGTCATCGTNA----TCATCAT---CATCATCATCAGCAGCA--AACA--CTCTTGTGTCCAGTAAT----ACCT-CCATCTCCAGNTCCATTGACACCATCCTAGCATTAAA----C-AATACCTTATTATCNTTACCATCATCAT-----------CATCAGCAGCAGCAGTA-TA--TA-TATCTTNATCCGTCCAGTATTATCTCCATCTCGAGTTCCATTGACGCCATTCTTACAGTACTTTGATACAACGTTAT-CGT----TATCATCAT---CATC---ATNATCACCATCATCATCGTCATCGTAATCATCTCATCCGTCCAGTGTTATTTCCATTTCAAGTTTCATTGGTGCCATTCTAACATTACCTTTTCCCACTTTATCCCTACCATCATTTTTATCGCCAACATGATCTTCANTGCAATCATCNTCACCANCAGCATACATCTTCATCCGTCCANNGTTATCTCCATCTCNAGTTTTATCGNCGCCGTTCTAACATC-GCCTTNTACCACC----TTATCGTTAC--TC-ATCATTCTTATCATCA---ACATCATC-AT--CGTAATCATCAT---CATCAGCAGC---A-TACATCNTCATCCATCCATCATTATC-TC-----C-CATC-TCA----AGTA-CCGTTGACGT-CATC----CT------TACATTANCC--GATACCAGC-------TTATTCTTAACCTCATCA--------------ACANCATCATCACCAACATCATCATCA-CTACA--A--TCAT--CATCG--TC----ATC---ATCANCAGCAGCAGCAGTAGCAGCAGCAT-------CATG-TATCTTC-AT--GCGTCTAGT---ATTATCT-C---CATC--TCCAGTT-TTATCGNC-----ATC-AT--TCT------A-AC--ATCACC-T-------NAT-A-TC---ATCAT-----CATCATCATCATCGTC-ATCATCATC---GTCATCANCAGCAGCATAT-----TCTTCAT--CATTA--AGTATTATCTCCATNTCCAGTCCNATCGACACCGTCATAACATTACCTTAT-------ATCACTT-NA-ACTTACCATCGNCATCNTTACCACCAACGTCATCGCCACCGTCGTCGTCGTCGTCATCGCCAGCGNCA--GCAGCAGCANCAT--ACATCTTCACCGATCCACCATTATC-TCCNTNTC-CAGCNTCATTGCCACCATC-TTAAC-ATTACCT-ATACCA-GCTTATACT-TATCAACANCAT--CANCACCGC--TACTCATCATCATCATCAG--CAGCAGCAGCAGCAGCATTAT--ATATCTTCATC--CATCCANTATAACCTCCATCTCTANTNCCATTGNCACCGATTNTGACCATNACCTGATACCATCTTAATC-TTANCATCTTGTCC---GT----AT-C-CAA---CATCATCATNATCATCATCAGCAGCAGCAGCAGCAGCGTAACCACCATCTTNACCATTATCCAGTATTTTCTCCATCTCCAGTCCAATTGACCCAATTCTAAATTTACCTGATACCACCCAATACTTACAACCATCATCCTTATCACCAACATCATCATTAATGTTATTACCATCAACAGCAGCAGCATATATCTTCACCCGTCCAGTATTTTNTNTCCNTCTCCGGTCCNNTTGACACCATCCTAGACATNACCTNATATCACCTTATACTTACCATCNNCATCCNTATCACCNACATCCTCATCACNGTT-----GNNNNNNNNNNNNNNNNNNNNNNNNNACAACAACAACAGCAGCAGAANATATCTTCAACCAGTCCAGTATNATCTCNNTCTNCAGTCCCANTNACGCCATCCGAACATAACCNNACACNANCTTATACTTACCANCTGTATCCATCAACACTGGCATTCTTATGACTGTGATCATCATCATCATCAGCAGTAGCAGNAGCATATACNTTCATNCGTCNAGTATTA
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|17 ): CACTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCCACCGTTATCATCATACCCCATCATCAGTGCTAT
Unaligned ( gi|30 ): TTGTCATTATTATCATTATTGTTATCAGTAATATCCTCTTTTTTTCCATCTCGCCCTCCTCCTCCT
Alignments
lowQualScore : 111111 22222 11 55555555555 111 6666666666666 33333333 666666666666666666666 11 2 22222222 6666666666666 1 1 11111 1 11 11 666666666666 555555555 222 22222222222 1111111 222222 111 1 1 33333333333 1 111 3 222222222 222222222 11111111 1111 11 333 2222 1 11 111 33333333333 44444444444 1 11 1 11 11111 111 111 1 222 1 1111 222222 222 111 1111 111 11111 11 1 4444444444444444444 1 11 4444444444444 111 333333333333 3333333 222222222 11111 111 1111111 11 33333333333333333 111 111 444444444444444444444444444444444444444444444444444 11111 33333333 111 4444444 111 11 111 222 1 2222 1 1 11 55555555555 11 22222 111 11 11 1 222222 222 11111 1 11 111 1 88888888888888888888 22222 11 111 222 1 88888888888888888888888888888888 1 1 222 1 11 77777777777777777777777
lowQualScore : 1 3 222222 1 33333 1 1 1 11 33333333333 444 11 0000000000000 1 0 2 66666666 1 999999999999999999999 0 4 3 33 6 6 0 00000000 7 6 6 9999999999999 2 6 0 0 0 6 1 3 0 6 0 44444 6 6 6 6 3 88 0 7 11 7 6 888888888888 1 6 777777777 0 333 1 9999999999 77777777777 9999999 888888 777 1 1 0 1 0 2 66666666666 2 5 0 777 0 1 5 1 8 1 8 888 99 5 222222222 4 333333333 22222222 5 2 0 1 2222 1 11 000 6 1111 0 0 33 2 3 3 444 2 88888888888 0 3 0 1 77777777777 0 0 0 1 0 33 0 1 2 0 3 11 3 99 8888 0 6 3 22222 000 000 1 5 1 5 111 1 1 1 5 22 1 0 1 0 0 6 0000 1 888888 3 222 8 444 8 2222 444 0 88888 1 77 6 0 0 0000000000000000000 0 11 7777777777777 1 888 777777777777 0000000 0 222222222 3 22222 5 5 3 4 66 111 777 777 9999 777 1 0 6 333 0 4444444 44 55555555555555555 5 555 111 5 333333333333333333333333333333333333333333333333333 5 9999 22222 11 5 9999 1 4 88888888 0 888 222 4 1 1 0 0 6 3333333 1 777 44 1 6 1 66 1 1 0 44 11 2 1 999 000 0 0 1 0000 2 1 7777 0 0 0 99 22222222222 1 1 33 1 2 00000 444 0 88 88 5 1 999999 111 1 1 1 77777 1 5 1 77 222 3 1 66666666666666666666 1 66666 1 88 999 1 1 2 22 111 1 1 22 1 5 1 1 66666666666666666666666666666666 1 5 5 1 22 1 1 1 2 22 1 1 1 111 5 88 77777777777777777777777 1 1 1 1
lowQualScore : . . ...... . ..... . . . .. ........... ... .. ............. . . . ........ . ..................... . . . .. . . . ........ . . . ............. . . . . . . . . . . . ..... . . . . . .. . . .. . . ............ . . ......... . ... . .......... ........... ....... ...... ... . . . . . . ........... . . . ... . . . . . . . ... .. . ......... . ......... ........ . . . . .... . .. ... . .... . . .. . . . ... . ........... . . . . ........... . . . . . .. . . . . . .. . .. .... . . . ..... ... ... . . . . ... . . . . .. . . . . . . .... . ...... . ... . ... . .... ... . ..... . .. . . . ................... . .. ............. . ... ............ ....... . ......... . ..... . . . . .. ... ... ... .... ... . . . ... . ....... .. ................. . ... ... . ................................................... . .... ..... .. . .... . . ........ . ... ... . . . . . . ....... . ... .. . . . .. . . . .. .. . . ... ... . . . .... . . .... . . . .. ........... . . .. . . ..... ... . .. .. . . ...... ... . . . ..... . . . .. ... . . .................... . ..... . .. ... . . . .. ... . . .. . . . . ................................ . . . . .. . . . . .. . . . ... . .. ....................... . . . .
lowQualScore : 0 2 444444 4 22222 0 4 4 00 44444444444 222 88 2222222222222 0 2 5 22222222 0 000000000000000000000 2 0 2 88 5 7 7 33333333 3 7 7 7777777777777 0 7 7 7 7 7 0 2 0 5 8 22222 7 7 7 7 3 33 7 3 00 3 7 333333333333 0 7 000000000 7 333 0 7777777777 66666666666 5555555 888888 555 2 0 0 0 0 0 55555555555 0 8 0 555 0 0 8 0 0 0 0 444 22 7 999999999 0 000000000 11111111 0 7 4 0 1111 0 00 333 7 2222 0 2 22 5 2 5 222 5 55555555555 2 2 8 0 55555555555 2 2 2 2 0 88 0 0 0 8 2 88 2 55 0000 2 7 7 33333 000 000 0 0 7 5 000 0 0 0 5 00 0 7 0 7 7 7 8888 0 000000 2 222 0 000 0 0000 000 8 22222 0 55 5 2 0 0000000000000000000 0 22 8888888888888 0 000 222222222222 7777777 7 999999999 0 77777 7 4 8 0 11 333 000 000 4444 888 0 1 7 888 2 4444444 11 88888888888888888 7 777 000 0 222222222222222222222222222222222222222222222222222 0 1111 55555 11 0 1111 0 3 00000000 7 666 555 0 0 0 7 7 7 3333333 0 777 77 0 7 4 00 4 4 8 66 00 2 0 555 555 2 0 0 5555 5 0 2222 0 0 2 88 55555555555 2 0 88 0 0 55555 000 2 33 33 0 0 000000 000 0 0 0 00000 0 0 0 55 333 3 0 00000000000000000000 0 00000 0 55 555 0 0 5 00 000 0 0 00 0 0 0 0 00000000000000000000000000000000 0 0 0 0 00 0 0 0 5 00 0 0 0 000 0 00 00000000000000000000000 0 0 0 0
consensus : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTCTGGNACATGGTTGACTTCTG--GA--TCGGCTT-CTAGGTTNACTTCTGGGACATGGTTGACTTC--TGGG---------GACATG--GTTGATTTCTGGNACAT-GT--ACTT--CCGGGTAGACTTCTGGGACATA--------GCNGACTTC----TAGA----TGC-TTA-GTTGATTTCTGGGTCGACTTCNGGGAAATGGTTGACTTCCGAATTGACTTCTGGAATATATT--TGACTTT-AATTCTTTGATGCCGTATATAATATACAGTTAAGTTTTTAAACACACTGTTAAGACCATTTAAAACTACATA--------TCAG-AAAATACCAGTATTCTGTTTAGAGTTGTTGTTTCGCTACTATGTTAATGTCGGTACAATAACGTCGATTGGTATGTTTACAATCTCATATAGAGAGGCTAAAACAATTTAATTANAAAGATAAATA-TATCAGGAAGAATAGTCA--GACATTGTGTAACAGAAAACACAACATTTTGATT-ACACTC--GACGAAATCAAAATGAGATTAACTTACCTATTATCCAAATCTCGATTATCCCATCTTCAC------------CAACATGTAGATAATNTCTAGTCCAG------NA-CCGATTCTTCATCATCA---TCCATTACACATCTTCATCACCTGATTTATCTCNATCTTCAGTGTCATCGGTGTCATCCATAACATTACCTGATACTTCCACACACCAACTACCATCACTT-T--T--CCAT------CAT---CATCTTTATNATCA-ACGCTTT-CATCATCATCATC-ATCAA-CAC-TATCATCAGCATCATCTGCAGTTTCATTG-ACACCATCCT---TAACANTGCCCGATACCTTCT-TNTC-ATTG-CA--ATCA-T---------CGTCGTTATC----G-C--CGG----C---ATCATCATCANCGTNA----TCATCATCATCATCATCAGCAGCA--AACA--CTCTTGTGTCCAGTAAT----ACCT-CCATCTCCAGNTCCATTGACACCATCCTAGCATTAAA----CAA-TACCTTATTATCNTTACCATCATCAT-----------CATCAGCAGCAGCAGTA-TA--TA-TATCTTNATCCGTCCAGTATTATCTCCATCTCGAGTTCCATTGACGCCATTCTTACAGTACTTTGATACAACGTTAT-CGT----TATCATCAT---CATC---ATNATCACCATCATCATCATCATCGTAATCATCTCATCCGTCCAGTGTTATTTCCATTTCAAGTTTCATTGGTGCCATTCTAACATTACCTTTTCCCACTTTATCCCTACCATCATTTTTATCGCCAACATGATCTTCANTGCAATCATCNTCACCANCAGCATACATCTTCATCCGTCCANNGTTATCTCCATCTCNAGTTTTATCGNCGCCGTTCTAACATC-GCCTTNTACCACC----TTATCGTTAC--TC-ATCATTCTTATCATCA---ACATCATC-AT--CGTAATCATCAT---CATCAGCAGC---A-TACATCNTCATCCATCCATCATTATC-TC-----C-CATC-TCA----AGTA-CCGTTGACGT-CATC----CT------TACATTANCC--GATACCAGC-------TTATTCTTAA---CN-TCATCA---------ACANCA----TC-ATCACCAACATCATCATCA-CTACA--A--TCAT--CATCG--TC----ATC---ATCANCAGCAGCAGCAGTAGCAGCAGCAT-------CATG-TATCTTC-AT--GCGTCTAGT---ATTATCT-C---CATC--TCCAGTT-TTATCGNC-----ATC-AT--TCT------A-AC--ATCACC-T-------NAT-A-TC---ATCAT-----CATCATCATCATCGTC-ATCATCATC---GTCATCANCAGCAGCA----TAT-TCTTCAT-C-ATTA--NGTNTTATCTCCATNTCCAGTCCNATCGACACCGTCATAACATTACCTTAT-------ATCACTTNA-A-CTTACCATCGNCATCNTTACCACCAACGTCATCGCCACCGTCGTCGTCGTCGTCATCGCCAGCGNCA--GCAGCAGCANCAT--ACATCTTCACCGATCCACCATTATC-TCCNTNTC-CAGCNTCATTGCCACCATC-TTAAC-ATTACCT-ATACCA-GCTTATACT-TATCAACANCAT--CANCACCGC--TACTCATCATCATCATCAG--CAGCAGCAGCAGCAGCATTAT--ATATCTTCATC--CATCCANTATAACCTCCATCTCTANTNCCATTGNCACCGATTNTGACCATNACCTGATACCATCTTAATC-TTANCATCTTGTCC---GT----AT-C-CAA---CATCATCATNATCATCATCAGCAGCAGCAGCAGCAGCGTAACCACCATCTTNACCATTATCCAGTATTTTCTCCATCTCCAGTCCAATTGACCCAATTCTAAATTTACCTGATACCACCCAATACTTACAACCATCATCCTTATCACCAACATCATCATTAATGTTATTACCATCAACAGCAGCAGCATATATCTTCACCCGTCCAGTATTTTNTNTCCNTCTCCGGTCCNNTTGACACCATCCTAGACATNACCTNATATCACCTTATACTTACCATCNNCATCCNTATCACCNACATCCTCATCACNGTT-----GNNNNNNNNNNNNNNNNNNNNNNNNNACAACAACAACAGCAGCAGAANATATCTTCAACCAGTCCAGTATNATCTCNNTCTNCAGTCCCANTNACGCCATCCGAACATAACCNNACACNANCTTATACTTACCANCTGTATCCATCAACACTGGCATTCTTATGACTGTGATCATCATCATCATCAGCAGTAGCAGNAGCATATACNTTCATNCGTCNAGTATTA
Reference ( family-1427 ) : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTCTGGNACATGGTTGACTTCTG--GA--TCGGCTT-CTAGGTTNACTTCTGGGACATGGTTGACTTC--TGGG---------GACATG--GTTGATTTCTGGNACAT-GT--ACTT--CCGGGTNGACTTCTGGGACATA--------GCNGACTTC----TGG-----TGC-TTA-GTTGATTTCTGGGTCGACTTCTGGGAAATGGTTGACTTCCGAATTGACTTCTGGAATATATT--TGACTTT-AATTCTTTGATGCCGTATATAATATACAGTTAAGTTTTTAAACACACTGTTAAGACCATTTAAAACTACATA--------TCAG-AAAATACCAGTATTCTGTTTAGAGTTGTTGTTTCGCTACTATGTTAATGTCGGTACAATAACGTCGATTGGTATGTTTACAATCTCATATAGAGAGGCTAAAACAATTTAATTANAAAGATAAATA-TATCAGGAAGAATAGTCA--GACATTGTGTAACAGAAAACACAACATTTTGATT-ACACTC--GACGAAATCAAAATGAGATTAACTTACCTATTATCCAAATCTCGATTATCCCATCTTCAC------------CAACATGTAGATAATNTCTAGTCCAG------NA-CCGATTCTTCATCATCA---TCCATTACACATCTTCATCACCTGATTTATCTCNATCTTCAGTGTCATCGGTGTCATCCATAACATTACCTGATACTTCCACACACCAACTACCATCACTT-T--T--CCAT------CAT---CATCTTTATNATCA-ACGCTNT-TATCATCGTCATC-ATCAA-CAC-TATCATCGGCATCATCTGCAGTTTCATTG-ACACCATCCT---TAACA-TGCCNGATACCTTNT-TNTC-ATCG-CA--ATCA-T---------CATCGTTATC----G-C--CAA----C---ATCATCGTCATCGTNA----TCATCATCATCATCATCAGCAGCA--AACA--CTCTTGTGTCCAGTAAT----ACCT-CCATCTCCAGNTCCATTGACACCATCCTAGCATTAAA----CAA-TACCTTATTATCNTTACCATCATCAT-----------CATCAGCAGCAGCAGTA-TA--TA-TATCTTNATCCGTCCAGTATTATCTCCATCTCGAGTTCCATTGACGCCATTCTTACAGTACTTTGATACAACGTTAT-CGT----TATCATCAT---CATC---ATNATCACCATCATCATCGTCATCGTAATCATCTCATCCGTCCAGTGTTATTTCCATTTCAAGTTTCATTGGTGCCATTCTAACATTACCTTTTCCCACTTTATCCCTACCATCATTTTTATCGCCAACATGATCTTCANTGCAATCATCNTCACCANCAGCATACATCTTCATCCGTCCANNGTTATCTCCATCTCNAGTTTTATCGNCGCCGTTCTAACATC-GCCTTNTACCACC----TTATCGTTAC--TC-ATCATTCTTATCATCA---ACATCATC-AT--CGTAATCATCAT---CATCAGCAGC---A-TACATCNTCATCCATCCATCATTATC-TC-----C-CATC-TCA----AGTA-CCGTTGACGT-CATC----CT------TACATTANCC--GATACCAGC-------TTATTCTTAA---CC-TCATCA---------ACANCA----TC-ATCACCAACATCATCATCA-CTACA--A--TCAT--CATCG--TC----ATC---ATCANCAGCAGCAGCAGTAGCAGCAGCAT-------CATG-TATCTTC-AT--GCGTCTAGT---ATTATCT-C---CATC--TCCAGTT-TTATCGNC-----ATC-AT--TCT------A-AC--ATCACC-T-------NAT-A-TC---ATCAT-----CATCATCATCATCGTC-ATCATCATC---GTCATCANCAGCAGCA----TAT-TCTTCAT-C-ATTA--AGTATTATCTCCATNTCCAGTCCNATCGACACCGTCATAACATTACCTTAT-------ATCACTTNA-A-CTTACCATCGNCATCNTTACCACCAACGTCATCGCCACCGTCGTCGTCGTCGTCATCGCCAGCGNCA--GCAGCAGCANCAT--ACATCTTCACCGATCCACCATTATC-TCCNTNTC-CAGCNTCATTGCCACCATC-TTAAC-ATTACCT-ATACCA-GCTTATACT-TATCAACANCAT--CANCACCGC--TACTCATCATCATCATCAG--CAGCAGCAGCAGCAGCATTAT--ATATCTTCATC--CATCCANTATAACCTCCATCTCTANTNCCATTGNCACCGATTNTGACCATNACCTGATACCATCTTAATC-TTANCATCTTGTCC---GT----AT-C-CAA---CATCATCATNATCATCATCAGCAGCAGCAGCAGCAGCGTAACCACCATCTTNACCATTATCCAGTATTTTCTCCATCTCCAGTCCAATTGACCCAATTCTAAATTTACCTGATACCACCCAATACTTACAACCATCATCCTTATCACCAACATCATCATTAATGTTATTACCATCAACAGCAGCAGCATATATCTTCACCCGTCCAGTATTTTNTNTCCNTCTCCGGTCCNNTTGACACCATCCTAGACATNACCTNATATCACCTTATACTTACCATCNNCATCCNTATCACCNACATCCTCATCACNGTT-----GNNNNNNNNNNNNNNNNNNNNNNNNNACAACAACAACAGCAGCAGAANATATCTTCAACCAGTCCAGTATNATCTCNNTCTNCAGTCCCANTNACGCCATCCGAACATAACCNNACACNANCTTATACTTACCANCTGTATCCATCAACACTGGCATTCTTATGACTGTGATCATCATCATCATCAGCAGTAGCAGNAGCATATACNTTCATNCGTCNAGTATTA
gi|1 : TTCTGAGATATGGTTGACCTTTA--AG--TCGACTT-CTGTGTTTACTTCTGGAACATGGTTGATTTC--TGAA----------ACATG--GTTGACTTCTGGAACAT-GT--TTTTTTCTGGATAGACTTCTGG-ACATA--------GCAGACTTC----TAGATAGATGCCTTA-GTTGATTTCTTGGTCGATTTCAGGGAAGTGGTTGACTTTCAAATTGACTTCTGGAATATATT--TGACTTTCAATTCTTTGATACCATATATAATATACAAT---GTTT--AAACACACTGTTAAGACCATTTAAAACTACATAATATTTTATCAGTAAAATACCTGTATTCTTTTTAAAGTTGTTGTTTCACTACTATGTTAATGTCGGTACAATTATGTTGACTGGTATGCTTACAATCTCATATAGAGAGGCTAAAACAATTTAATTAGAAAGATAAATA-TATCAGGAAGAATAGTCA--GACATTGTGTAACAGAAAACACAACATTTTGATT-ACATTC--GACAAAATCCTATTAAGATTAACTTA----TTATCCAAATCTCGATTATCCCATCTTCACCAACAGCTTCACCAACATGTAGATAATGTCCAGTCCAG------CAACCAATTCTTCATCACCA---TCCATTACACATCTTCATCACCTGATTTATCTCAATCTTCAGTGTCATCGGTGTCATCCATAACATTACCTGATACTTCCACACACTAACTACCATCACTT-T--T--CCAT------CAT---CATCCTTATGATCA-ACACTTT-TATCATCATCATC-ATCAATCACCTATCATCAGTATCATCTGCAGTTTCATTG-ACACCATCCT---TAACAATGCCCGATACCTTCT-TTTC-ATTG-CA--ATCA-T---------CATCCTTATC----A-C--CAA----C---ATCATCATCACTGTAA----TCATCATCATCATCATCAGCAGCA--AACA---TCTTGTGTCCAGTAAT----ACCT-CCATCTCCAGCTCCATTGACACCATCCTAGCATTAAA----CAAATACCTTATTATCCTTACAATCATCAT-----------CATCAGTAGCAGCAGTA-TA--TA-TATCTTGATCCGTCCAGTATTATCCCCATCTCCAGTTCCATTGACACC-TTCTTACAGTACTT-GATACAACGTTAT-CCT----TACCATCAT---CATT---ATGATCACCAACATCATCATCACTGTAATCATCTCATCCGTCCAGTGTTATTTCCATTTCAAGTTTCATTGGTGCCATTCTAACATTACCTTT-CCCACTTTATCCCTACCATCATTTTTATCGCCAACATGATC---ACTGCAATCATCATCACCATCAGTATACATCTTCATCCGTCCATGGTTATCTCCAACTCAAGTATTATTGACACCATTCTAACATT-TCCCGGTACCACC----TTATTCTTAC--TC-ATCATTCTTATCACCA---ACATCTTC-AC--TGCAATCATCAT---CATCAGCAGC---A-TGTATCTTCATGCGTCTAGTATTATC-TC-----C--ATC-TCC----AATT-CTATTGACAA-CAAC----CT------AACATTACCA--GATACCAGC-------TTATTCTTA-------CCATCA---------ACAACT----TT-ATCGCCAACATCATCATCA-CTGCA--A--TCAT--CATCA--TC----ATT---ATTAGCAGCAGCAGCAGTAGCAGAAGCAG-------CATG-TATCTTT-AT--GTGTCTAGT---ATTATCT-C---CATC--TCCAGTT-TTATTGAC-----AGC-AT--CCT------A-AC--ATTACC-T-------GAT-A-CC---ACCTT-----CATCACCATCACTGTT-ATCACCATC---ATCATCATCAGCAGCA----TATCTCTTCAC-CTATTA--AGTACTATCTTCATCTCCAGTTCACTTGACACCAGCCTAACATTACCTGAT-------ACCACCTAA-AACTTACCATCATCATCTTTACCACCAACACCATCACCACTGTTATCTTCATCATCATCACCAGCTTCA--GCAGCAGCAGCAT--ATATCTTCACCTATCCAGTATTATC-TCCTTCTC-CAGTCTCATTGACACCATC-CTAAC-ATTACCTGATACCA-GCTTATACT-TACCAACATCAT--CAACACTGTGATACTCATCACCATCATCAG--CAGCAGCAGCAGCAGCATTAT--ATATCTTCACC--TATCCAGTATAACCTCCATCTCTAGTCCCATTGAC-CCAATTCTAAC-ATTACCTAATACCACCTTAAAC-TTACCATCTTGTCC---AT----ATAC-CAA---CATCATTATCATCATCATCAGGAGCAGCAGCAGCAGCATA-----TATCTTTACC--TATCCAGTATTTTCTCCATCTCCAGTCCAATTGACCCAATTCTAAATTTACCTGATACCACCCAATACTTACAACCATCATCCTTATCACCAACATCATCATTAATGTTATTATCATCAACAGCAGCAGCATATATCTTCACTTATCCAGTATTTTTTCTCCATCTCCAGTCCATTTGACACCATTCT-GACATTACCTGATATCACCTTATACTTACCATCATCATCCTTATCATCTACATCCTCATCACTGTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTATATCTTCAACTA-TCCAGTATAATCTCATTCTCCAGTCTCAATGATGCCATCCTAACATAACCTGACACAAGCTTATACTTACCAAC---AT-CATCAACACTG-----------------------ATCATCATCAGCAGTAGCAGCAGCATATATATTCATGTATCGAGTATTA
gi|10 : tgtttctgaggaccgcatctccacgtacatgcgtaaaaattgATCGACATCGT-ATAACAATACTTTATCGACATAGTCATTGCA-A-ACTATTATCGACATCGTCACTGCCAATGCCATTGCCACCGTTTTCGACATCGTAATTGTCATCGTCATTGCTG--ACGTTATTGACATTTTCATTGA--CACCATTATC-TCCAT-------CGTTATTGCCACCGTTATTGAT-ATTGTCA-ATATCA---TTG---T-TATCGACAGCGT--CATTGCCAT--T-TTCAT
gi|11 : ttTCATCATCATCGTCGTTGTCGTCGTCGCCGCC-GNNNNN--NNNNNNNNNNNNN--NNNNNNNNNNNNNNNCATTATTGTCATATTTATCACAGCATCATAATCATCATT-TTAAT-ATTAACT-ATACCGTGATCATA----ATCAATATCATACCATTACCAC---AGTCATCATCATTATCGGTATAGCAGCAACATCAATATTAT--ATAGCAGCATC--t
gi|12 : aCATTGTTGATTTCTT--GA--TTAACTA-CTAGGCTGACATCTTAGATATGGTTGACTTC--TGGGCTGGCATCTGATATATTGTTGGTTTATGGT---T-TT--ACTC--CCGGGTTGACTACTAGGATATGACTTAGAGGCTGACTTC----TGG-----TACATTA--TTGATTTCTGAAACAACTTCTGGGAAATGGTTGACTTCTGGGCTGATATCTGG--TACATTGCTGATTTagaagacac
gi|13 : AACATCATCATCATCTACA--AATTCATGTTACCT--TCTAACATC---ATCTACATCATCAGCATTATATTCAACAT-------CATGATATCTTC-CA--ACATCTA-T---ATCATCA-CTATCATC--TTCAATT-TCAT-GAT-----ATC--T--TCT------A-AT--ATCAACAT-------TATCA-TC---TTCAA-----CATCATGATAATCTTCCAACATCATCTAAATCATCACCATCA-----------TCTTCAA-C-A
gi|14 : ccttgCAACAACATCAACACCACTATCAAC-----CATCAGCAATAGCACCA--GCAGCAGCACCAC---CACCGCCACCA--CCACCGTTACC-TCCAAGAC-CACCCTCA---CCACAATC-TCAACCACCACC----ACCA-AC--A-ACAATAACAACAACAT--CAACACCAC--TACCAACCATCATCAGCAG--CAGCAGTACCAGCAGC
gi|15 : TCATCA-TTACA--A--CC----CATAGCTTC----ATC---ATCAACAGCAGCATCAATAGCATTCTCAT-------CAT--CATCAAC-ATAAGTGGC-AGTGACATTATTT-CA--CACC--ATCAG-------CAGC-----ATCAAT--TC----------C--ATTGTA-T-------AA--A-TC---ACCAC-----CACCATCATCA--GTC-ATCATCATT---GTCATCA
gi|16 : tTCATCATC---ATTATCAGCAGCAGCA--------TCTTTAT-C-ATTA--CTTTTTATC
gi|16 : TCA-T---------CATCATTATC----A-G--CAG----C---AGCATCTTTATCATTACTTTTTATCATTATCATTATTAattatcattattatttttgttatcattatcattaccatgatgatggtgatggtgatggtgatgatcatgatgatacagtacgattattataa
gi|16 : AT-CGTACTGTATCATCATGATCATC---ACCATCACCATCACCATCATCATGGTAATGATtttttgttatcattatcattaccatgatgatggtgatggtgatggtgatgatcatgatgatacagtacgattattataa
gi|18 : tcatcatcattatcagcagcagcatctttatcattactttttatcattatcattattatttttgttatcattGTTGTTATCATC-----AGT-ATAATC-------A-AT--ATTA---T-------AAT-T-TC-----TAT-----CATCATAACCATGATC-ATCATTATT---GTCATCATCAGCA-----------TCCTCAT-C-ATTAATAGTATTATtattataa
gi|19 : ggctgctaaatttaatatcATCGCTATCACTAGCTTTTTCGTCAACGGT--AGCATC-AT-TTACATCA------TTATTGTTA---TC-GTCGTTGTCGGCGTCA---TCATCATC-AT--CAAAATCATCAT---CATCAGCAGC---A-tatt
gi|2 : catcaccCATGTTTG-CTTCTG--GAACTTGGTT-----GGTTAACTTCTGGAACATGGTTGAATTC--TGGA----------ACATG--GTTGACTTCTGAAACATAGTTGACTT--CTGGATAGACTTATTGGACATA--------GCAGACTTCAAGGTAGA----TGC-CTAAGTTGATTTATAGGTCGATTTCAGGGAAATAGTTGACTTTCAAATTGACTTCTGGAATATATT--TGACTTTGAATTCTTTGATGCCATATATAATATA----TAA-TGTTTGAACACACTGTTAAGACCATTTAAAA-----------------------ATACCAGTATTCTGTTTAGAGTTGTTGTTTTGCTACTATGTTAATGTCAGTAAAATAATGTCAATTGGTATGTTTACAATCTCATATAGAAAGGCTAAAACAATTCAATTAGAAAGATAAATA-TATCAGGAAGTATAGTCG--GACATTGTGTAACAGAAAACACAACATTTTGATT-ACACTC--ATCAAAATCAAAATGAGA-----TTACCTATTATCGAAATCTCGATTATCCCATCTTCAC------------CAACATGTAGATAATAT-TAGTCCAGTCCTGCAA-CCAATTCTTCATCATCA---TCCATTACACATCTTCATCACCTGATATATCTCCATCTTCAGTGTCATCGGTGTCATCCATAAC----------ACTT----------ACTACCATCACAT-T--T--CCAT------CAT---CATCATTATGATCA-ACACTTT-TATCATCATAATCAATC-A-C-C-TATCATCAGTATCATCTGCAGTTTCATTG-ACACCATCCT---TAACATTACCCGATACCTTCT-TATC-ATTA-CA--ATCA-T---------TATCCTTAGC----G-C--CAA----C---ATCATCATCACTGTAA----TCATCATCATCATCAGCAGCAGCA--AACATCTTCTTGTGTCCAGTAAT----ACCT-CCATCTCCAGTTCCATTGACACCATCCTAGCATTACC----TAA-TACCTTTTTATCCTTACCATCATCATTTTATCACCAACATTATCATCATTAGCA-TA--TA-TATCTTTATCCATCCAGTATTATCTCCATCTCGAGTTCCATTGATGCTATTCTTACAGTAC-TTGATACAACGTTAT-CCT----TACCATCAT---CATT---CTGATCACCAACATCATCTTCAATGTAATCATCTCATCCGTCCAGTGTTATTTCCATTTCAAGTTTCATTGGTGCCATTCTAACATTACCTTTTCCCACTTTATCCCTACCATCATTTTTATCACCAACATGATCTTCAATGTAATCATCCTCATCAGCAGCATACATC-TCATCTGTCCAGTATTATTTCCATTTCCAGTTTCATTGGTGCCATTCTAACATT-GCCTTTTACCACT----ATATCCTTACCATT-ATCATTCTTATCACCA---ACATCATC-AC--TATAATCATCATCACCATCAGCAGCAGTA-TACATCTTCATCCATCCATGATTATC-TC-----C-CAAC-TCA----AGTA-TCGTTGACGC-CATT----CT------TACATTACCC--AATACCACC-------TTATTCTTAG---CA-TTAT---------------CA----TC-ATCACCAACATAG--A-CA-CTGCA--A---------------TC----ATC---ATCATCAGCAG-------------------------CATG-TATCTTC-AT--GCATCTTGT---ATTATGT-C---CATC--TCCAGTT-TTATTGACCGTATACC-AC--TTT------ATACTTACCATC-TGTATCCATAT-A-CCAAAATCCT-----CATCACTGTGATCATC-ATCATCATC---ATCATCAACAGCAGCAGCAGTATATCTTCATCC-ATCC--AGTTTTATCACCATGTCCAGTCCCATTGACACCATCATAGCATTACCGTAT-------ATCACTTTATA-CTTACCATCTGTATCCATA-TACCAACATCat
gi|20 : acactccttacctgaatctatacgttggcaatcagtggatcccgtatgtaaaactttcgaaggactgtgcttctgtttctgaggaccgtCC------A-GC--ATCACCAT-------CAT-AATA---ATCAT-----CATCATCATAATCGTT-GTCGTCGTC---GTAATGAACAGCCGCA----TAT-T-TTCAT----TTA--TATATTAACT
gi|21 : TTCTGGCACATGGTAGACTTCAG--AA--TTGGCAT------TTTATTTCTGTCACATGGTAGACTTCAGTATC---------GGCAT----TTCATTTCTGGCACAT--------------GGTAGACTTCgatatatgattcagttacat
gi|22 : tgtttaatGTTCAATTTGCATTATGTTTAC--TATTTGAATAT----TCATTCGT-----ATCATCAT---CATC---ATCATCATCATCGACATTGTCTTCATAATCATCTC
gi|23 : atgtTATTACCATCATCAGCAGCAGCATATcatgag
gi|23 : ATTACC---ATCATCAGCAGCAGCA----TA----TTTAT-C-ATTG--CATTTTATCttatcattgcattttatcattattataactgttgttattactatcattataatcattgttatcgttat
gi|24 : tCATCAGCATTAGCATTA-TCACA--A--TCAT--CATCA--TC----ATCGATATCAACAGCAGCAGCA-TAGC--CACCAC-------CACA-T-TCTAC-Aattattataactgttgttattactatcattataatcattgttatcgttat
gi|25 : AGAAGTAGTAGTAGTAGCATGTGTTGTCAT--TAACTTC-AT-----TATGGT-----CATTT-T---CATTATTCCATTT-TTATCGCC-----ATT-AT--TGT---------C--ATTACC-acatcaacagcaga
gi|26 : TTCTTAA---CC-TAATCA---------ATACAA----TC-ATCAACACCATCACAATCA-CTATA--A--CCAA--CATCA--GC----ATT---ATCATCAGCAGCAGCAACAGCAGAAGatc
gi|27 : tCATTTTT----TGCTTTTAT-TATCATTAT-CAG----CATCATCAT---CATCATAATAATCACCATCATCATAATCACC
gi|27 : TTAT-CAT----TATCAGCAT---CATC---ATCATCATAATAATCACCATCATCATAATCACC
gi|28 : cattttttgcttttaATAC-ATCATAATCATTATGATCTTGATC---GT----G-----------ATAATCACAATCATCATCAGCAGCAACAGCAGCA
gi|29 : T----TATCATTAT---CATC---ATGCTCAGCATCATCACTATCATGAAAATCATTTta
gi|3 : ttaTTCTGAGGA--TCGTCTTTCTAGGTTGATCTCTGGGACATGGTTGATCTC--TGGG----------ACATG--GTTGATTTCTGGGACAT-G-------------GTTGACTTCTGGGATACA--------GCCGACTTC----T-----------TT--GTTGACATCTGAGTCAACTTCTGGGACATGGTTGACTTCTGAATTAACTACTGGAATATATC--TGA---------------TGCCGTATAAAATATACAGTTAAGTTTTTAAA---ACTGTTAAGACCAATTAAAACTACATA--------TCAGGAAAATACCAGAATACTGTTTA-AGTT-TTGTTTTGCTACTATGTTAGTGTCGGTACAATAACGCCAATAAGTATGTTTGTAATCTTATGTAGAGA--CTAGAGCAATTTAATTACAAAGATAA--A-TATTATGAAGAATGG--A--GATATTattaatattaatatc
gi|31 : catactccttacctggatctatacctggaactataggtatgtggccaatcagtggatcccaaatgtaaagctttcaaatgaatggacttctgt--ATCG-T---------CGTCGTGGTC----GTC--CGGTTGTC---GTTGTCGTCGTCGTCA----TTATCATCATCATCATCAGC
gi|32 : AGCAGCAGCAGCAGCAT-------CAT--TATCCTCGAT--GT------T---ATTATC
gi|33 : GTCGTCGTCGTCGTCGTTGTTGTCATCATCATCAGCAACA--GCAGCAGCAGCAataaaattataattatcact
gi|4 : CAACAGAAGCAGTAGATATCTTCATCCGTCCAGTATT--ATATCCTTCTCGGGTCCCATTGACACCATCCTAG-CATGACTTTATATCACTTTATACTTACCATCTGTATCCATAT-ACCAACATCCTCATCACAGT------GNNNNNNNNNNNNNNNNNNNNNNNNNACAACAACAACAGCAGCAGAAGATATCTT-AATCAGTCCAGTATTATCTCCATCTGCAGTCCCATTTACACCATCTGAACATAACCGTATATCACTTTATACTTACCATCTGTATCCAT--ATACTAGCATTCTTATGACTGTGATCATCATCATCATCAACAATAACAGAAGTATATACCTTCATCCGTCCAGTATTAg
gi|4 : aAT----ACTTACCATCTGTA--TCCAT-------ATACTAGCATT--------------CTTATGACTGTGATCATCATCAT-----------CATCAACAATAACAGAAGTA--TA-TACCTTCATCCGTCCAGTATTATATCCATCTCGAGTCCCATTGACACCAtatccatctcgagtcccattgacacca
gi|5 : acaacagaagcagtagatatcttcatccgtccagtattatatccttctcgggtcccattgacaccatcctagcatgactttatatcactttatacttaccatctgtatccatataccaacatcctcatcacagtgnnnnnnnnnnnnnnnnnnnnnnnnnacaacaacaacagcagcagaagatatcttaatcagtccagtattatctccatctgcagtcccatttacaccatctgaacataaccgtatatcactttCACCA-TTACCATCATTT-TAATGACCATACTGATCATTCTCATCTTTACTGTCAGATGCTCTACATAATCATCAGC-AGCAG-CAG-TAACAGCAGCATTATNNNNNNNNNNNNNN-NNNNNNNNNN---NNNNN-NNNNNNNNNNNNNNN-NNNN-NNNN-NN--NNNNNT---------TGTCAGGAGCAGCAG-CAGCAG----C---ATGATCAACATCTTGA----TCAACATCATTATCATCATTATCATTATCA--CTGTTATGACCA-TAATGATCATTT-TCATCTTTACATC--TTGTC-----CCTGG--TTGAAATCTCAA-TATC--ATCATCATTATCATCATCAT-----------CATCAGCAGCAGCAGTG-TAACCACCATCTTAATC
gi|5 : cattatcattatTCAG--GAGCAGCAGCAGCAGCATGATCAACATCTTGATCAACAT-CATTAT------CATC---ATTATCATTATCACTG-TTATGACCATAA--TGAT--CATTTTCATC-TTTACATCTTGTCCCTGGTTGAAAT-CTCAATATCATCATCATTATCATCATCATCATCAGCAGCAGCAGTGTAACCACCATCTTAATCATTATCattatcatca
gi|6 : cattatcattatcaccattaccatcattttaatgaccatactgatcattctcatctttactgtcagatgctctacataatcatcagcagcagcagtaacagcagcattatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnttgTCTCAA---CCATCAGCA---------ACAGCTGCTTTCTATTATCAACATCATCACTA-CTatca
gi|6 : aAACAGCTGCTTTCTATTATCAACATCATCACTAC--TTTATCTTTCTAGTCATCA---GCATGATCTAT--TTTTATCAACAT---CATCATTACC---ACTATATCATCATC-ATC-ATCATTATCGTC-----CTCAT----A----AGCAGCTGATTATGTGTAT------T------TGTATTAGCT--GCTA------------TTAATTTTG-----T-TCATAA---------ACATCA----TC-ATCT------TCATTATGA-CTATATCA--TCAT--CATTG--TC----ATC---ATCATCATCCTCCTCATTAGCAGCTG-AT-------TATG-TGTATTT------------GT---ATTAGCTGC---TATT-----AATT-TTGT----------TC-AT--A--------A-AC--ATCA---T-------CATCA-TC---ATTATGACTATATCATCATCATTGTC-ATCATCATC---CTCCTCAttatctttctagtcatcagcatgatctatttttatcaacatcatcattaccactatatcatcatcatcatcattatcgtcctcataagcagctgattatgtgtatttgtattagctgctattaattttgttcataaacatcatcatcttcattatgactatatcatcatcattgtcatcatcatcatcctcctcattagcagctgattatgtgtatttgtattagctgctattaattttgttcataaacatcatcatcatcattatgactatatcatcatcattgtcatcatcatcctcctcatt
gi|7 : atctcaaccatcagcTATTGTTATG-TC-ATCATAATTATCATGATTGACATCGTA-ATGTCGTAATCATTAT---CATC-GCTGG---T-TACATTATCAT--ATTCATCATCACT-GCTAACAC-CATCGTCATCGTAATA-TCATAGGCAT-CATCAAAATTACAGTGTACATCAACTTAGACAACAGTGTCAGATTTATTATTAATTGCA-TTATCATAAGTAATGACATCG----TT-ATCATCGACATCATCACCA-ATATA--T--TCAT--TATCG--TC----ATA---ATAATTAGCATCGTCAATAACAtt
gi|7 : attctcaaagttattggATTATCATCGCTGGT--T--ACAT------TAT---CATATTCATCATCA-CTGCTAA-CACCATCGTCATC-GT-AA-----TATCATAGGCATCATC-AAAATTACAGTGTACATCAACTTAGACAACAGTGTCAGAT---TTAT-TATTAATTG-CATTATCA-TAAGTAATGACATCGTTATC----A-T--CGA----C---ATCATCACCAATATAT----TCATTATCGTCATAATAATTAGCA--tcg
gi|8 : attctcaaagttattggtattgttatgtcatcataattatcatgattgacatcgtaatgtcgtaatcACAATTTAATTATGAAGATAGATACTGT--GAAAGAAACGTAAATGGCATTAT-TAA-AGAAAGCA-----TTTT-ATTGACACTCTTGACGAGA--AAAA----ATTAACTTACCTATTATCCAAGTCTTGGCTACCCCAACTTTAT------------CAATATTTGAATGACTTCTAACCCAG------GATCCGATTCTTTACTATCACACTCCATCATACATCTTTATCTACTGGCTTATTTCTATCTTCAGTTTCATCGATGTCATCCATAACATTACTTGtcgtcaataacatcg
gi|9 : CTTCTGTTTC-ATCATCA--A-CA-C---------CACCATTATC----A-T--CAA----CAATATCATCACCAACATCA----TTAACAACACCATTGTCAACAGCA--A
gi|9 : g-TCATCA---------ACAATA----TC-ATCACCAACATCATTA------ACA--A---CAC--CATTG--TC----AAC---AGCAACAACAANNNNNNNNNNNNNNNNNN-------NNNN-NNNNNNN-NN--NNNNNNNNN---NNNNNNN-N---NNNN--NNNNNNN-NNNNNNNN-----NNN-NN--NNNNNNNGCA-AC--AACAAT-T-------T-C-A-GC---ATCAT-----TATCATCAACACCACC-ACCATCATC---ATCATcaacaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngcaacaacaatttcagcatcattatcatcaacaccaccaccatcatcatcataattttgtcaagtcttactaaatac
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|17 ): CACTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCCACCGTTATCATCATACCCCATCATCAGTGCTAT
Unaligned ( gi|30 ): TTGTCATTATTATCATTATTGTTATCAGTAATATCCTCTTTTTTTCCATCTCGCCCTCCTCCTCCT