lowQualScore : 4 0 3
lowQualScore : . . .
lowQualScore : 8 5 3
consensus : TGCTGATGGCTACTTGGTTGAAAAATACCAAACTGCATAGCAGGAACAATATGTGGCTCTGCACTTGACAGAACTCATTCG
Reference ( gi|5 ) : TGCTGATGGTTACTTGGTTGAAAAATACCAAACTGCATAGCAGGAACAATATGTGGCTCTGCACTTGACAGAACTCATTTG
gi|26 : TACTGATGGCTACTTGGTTGAAAAATACT-TACTACATAGCAGGAACACTTTGTGG
gi|8 : GTTGATGACTTCTTGGTTGAAAAATACCAAACTGCATAGCAGGAACAACATGTGGCTCTGCACTTGACAGAACTCGTTC
gi|9 : GCAGATGGCTACTTGGTTGAAAAATACTAAACTGCATAGCAGGAACAAATTTTGGCTCTGTACTTGACAGAACTCATTC
gi|6 : CTGATGGCTACTTGGTTTAAAAATACCAAACTACACAGCAGGAACAATATGTGGCTCTGCACTTGACAGAATTCATTC
gi|10 : caCTGATGGCGACTTGGTTGAGCAAAACCAAACTGCATAGCAGGAACAATATGTGGCTCTGCACTTGACAGAACTCATT
gi|11 : TGATGGCTACTTGGTTGAAAAATACCAAACTACATAGCAAGAACAATATGTGGATCTGCACTTGACAAAACTCATTCc
gi|13 : TGATGGCTATTTGGTTGAAAACTACCAAACTACATAGCAGGAACAATATGTGGCTCTGCACTTGACAGAACGCATT
gi|12 : GATAGTTACTTGGTTGAAAAATACTAAACTGCATAGCAGGAACAATATGTAGCTCTGCACTTGACAGAACTCATTT
gi|16 : TGGCTACTTGGCTGAAAAATACCAAACTACATAGCAGGAACAATATGTGGCTCTGTACTTGACAGAACTCATTC
gi|15 : TGGCTACTTGGCTGAAAAATACCAAACTACATAGCAGGAACAATATGTGGCTCTGTACTTGACAGAACTCATTC
gi|17 : GCTACTTGGTTGAAGAATAGCAAACTGTATAGCAGGAACAATATGTGGCTCTGCGCTTCACAGAACTAATT
gi|18 : GCTACTTGGTTGAAGAATAGCAAACTGTATAGCAGGAACAATATATGGCTCTGAACTTCACAGAACTAATTca
gi|31 : GCTACTTGGATGAAAAATACCAAACTACAAAGCAc
gi|19 : TACTTGGTTGAAAAATACCAAACTGCATAGCAAGAACAATATGTGGCTCTGCACTTCACAGAACT
gi|28 : cAATACCAAACTGCATAGCAGGAACAATATGTGGCTCTGCACTTtg
gi|25 : ATAGCAAACTGTATAGCAGGAACAATATGTGGCTCTGCACTTCACAGAACTAATT
gi|24 : TACCAAACTGCATAGCAGGAACAATATGTGGCTCTGCACTTCACAGAACTCATT
gi|23 : TACCAAACTGCACAGCAGGAACAATATGTGTCTCTGCACTTGACAAAACCCATTTc
gi|22 : TACCAAACTACATAGCAGGAACAATATGTGGCTCTACACTTCACAGAATTCATTC
gi|21 : ACCAAACTACATAGCAGGAACAATATGCGGCTCTGCACTTGACGGAACTCATTC
gi|27 : cAAACTGCATTGCAGAAACAATATGTGGCTCTGCACTTCACAAAACTCATTC
gi|29 : gGCAGGAACAATATGTGGCTCTGCACTTCACAGAACT
8 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|1 ): AAATCATTGAACCGTAACAAAATGACAATATGCATAGACCCTAGCTAGTTTTTTACAACTATTTAACAACAATTATTATTACAACAATTATAACCAGAGGTTGTAGCAAAATA
Unaligned ( gi|2 ): AATCATTAAACTGGAACAAAATGACAATATGCGTAGATCCTAGCTAATTTTACAGAATTTAATTTTAAAAACCAGAGGTTGTTACAGCGAAA
Unaligned ( gi|3 ): CAAATCATTGAACCGCCATAAAAGGACAATATGCGCAGATTCTAGCTAGTTTTACATTAGCTAAGTCATCAATGTTATTCAGCATATA
Unaligned ( gi|4 ): AAATCATTTAACCAGAACAAAATGACGATATGAGCAGACCCTACCTAGATTTACAGAAATGAAACCAGAGGTTGTAGGGAAA
Unaligned ( gi|7 ): AAATCATTTAACCAGAACAAAATGATGATATGAGCAGATCCTAGCTAGTTTTACAGAATTGAAATCAGAGTTTGTTGGGAA
Unaligned ( gi|14 ): AAATCACCGAACAGGAAGAAAATGACAATATGTGCATATCCTACCTAGTTTTACACAATTAAAACCAGAAGCTGTA
Unaligned ( gi|20 ): AAATCATTTTAGTTAGTTTAGCTAGTTTTACAAAATTAAAACCAGAGGTTGTAGCGAAAT
Unaligned ( gi|30 ): GTTTTACAAAATTAAAACCAGAGGCTGTAGTGAAATAG
Alignments
lowQualScore :
lowQualScore :
lowQualScore :
consensus : TGCTGATGGCTACTTGGTTGAAAAATACCAAACTGCATAGCAGGAACAATATGTGGCTCTGCACTTGACAGAACTCATTCG
Reference ( family-1413 ) : TGCTGATGGCTACTTGGTTGAAAAATACCAAACTGCATAGCAGGAACAATATGTGGCTCTGCACTTGACAGAACTCATTCG
gi|10 : CTGATGGCGACTTGGTTGAGCAAAACCAAACTGCATAGCAGGAACAATATGTGGCTCTGCACTTGACAGAACTCATTC
gi|11 : TGATGGCTACTTGGTTGAAAAATACCAAACTACATAGCAAGAACAATATGTGGATCTGCACTTGACAAAACTCATTCG
gi|12 : GATAGTTACTTGGTTGAAAAATACTAAACTGCATAGCAGGAACAATATGTAGCTCTGCACTTGACAGAACTCATTTG
gi|13 : TGATGGCTATTTGGTTGAAAACTACCAAACTACATAGCAGGAACAATATGTGGCTCTGCACTTGACAGAACGCATT
gi|15 : TGGCTACTTGGCTGAAAAATACCAAACTACATAGCAGGAACAATATGTGGCTCTGTACTTGACAGAACTCATTCG
gi|16 : TGGCTACTTGGCTGAAAAATACCAAACTACATAGCAGGAACAATATGTGGCTCTGTACTTGACAGAACTCATTCG
gi|17 : GCTACTTGGTTGAAGAATAGCAAACTGTATAGCAGGAACAATATGTGGCTCTGCGCTTCACAGAACTAATTC
gi|18 : GCTACTTGGTTGAAGAATAGCAAACTGTATAGCAGGAACAATATATGGCTCTGAACTTCACAGAACTAATTCa
gi|19 : CTACTTGGTTGAAAAATACCAAACTGCATAGCAAGAACAATATGTGGCTCTGCACTTCACAGAACT
gi|21 : ACCAAACTACATAGCAGGAACAATATGCGGCTCTGCACTTGACGGAACTCATTCGtg
gi|22 : cTACCAAACTACATAGCAGGAACAATATGTGGCTCTACACTTCACAGAATTCATTCG
gi|23 : TACCAAACTGCACAGCAGGAACAATATGTGTCTCTGCACTTGACAAAACCCATT
gi|24 : TACCAAACTGCATAGCAGGAACAATATGTGGCTCTGCACTTCACAGAACTCATTCt
gi|25 : ATAGCAAACTGTATAGCAGGAACAATATGTGGCTCTGCACTTCACAGAACTAATT
gi|26 : TACTGATGGCTACTTGGTTGAAAAATACT-TACTACATAGCAGGAACACTTTGTGG
gi|27 : AAACTGCATTGCAGAAACAATATGTGGCTCTGCACTTCACAAAACTCATTCG
gi|28 : gAATACCAAACTGCATAGCAGGAACAATATGTGGCTCTGCACTT
gi|29 : GCAGGAACAATATGTGGCTCTGCACTTCACAGAACT
gi|31 : GCTACTTGGATGAAAAATACCAAACTACAAAGCAaa
gi|5 : TGCTGATGGTTACTTGGTTGAAAAATACCAAACTGCATAGCAGGAACAATATGTGGCTCTGCACTTGACAGAACTCATTTG
gi|6 : CTGATGGCTACTTGGTTTAAAAATACCAAACTACACAGCAGGAACAATATGTGGCTCTGCACTTGACAGAATTCATTCG
gi|8 : caGTTGATGACTTCTTGGTTGAAAAATACCAAACTGCATAGCAGGAACAACATGTGGCTCTGCACTTGACAGAACTCGTTCG
gi|9 : GCAGATGGCTACTTGGTTGAAAAATACTAAACTGCATAGCAGGAACAAATTTTGGCTCTGTACTTGACAGAACTCATTCG
blockSeqCons :
originalCons : TGCTGATGGCTACTTGGTTGAAAAATACCAAACTGCATAGCAGGAACAATATGTGGCTCTGCACTTGACAGAACTCATTCG
finalCons : TGCTGATGGCTACTTGGTTGAAAAATACCAAACTGCATAGCAGGAACAATATGTGGCTCTGCACTTGACAGAACTCATTCG
8 sequences could not be aligned to this reference sequence:
Unaligned ( gi|1 ): AAATCATTGAACCGTAACAAAATGACAATATGCATAGACCCTAGCTAGTTTTTTACAACTATTTAACAACAATTATTATTACAACAATTATAACCAGAGGTTGTAGCAAAATA
Unaligned ( gi|2 ): AATCATTAAACTGGAACAAAATGACAATATGCGTAGATCCTAGCTAATTTTACAGAATTTAATTTTAAAAACCAGAGGTTGTTACAGCGAAA
Unaligned ( gi|3 ): CAAATCATTGAACCGCCATAAAAGGACAATATGCGCAGATTCTAGCTAGTTTTACATTAGCTAAGTCATCAATGTTATTCAGCATATA
Unaligned ( gi|4 ): AAATCATTTAACCAGAACAAAATGACGATATGAGCAGACCCTACCTAGATTTACAGAAATGAAACCAGAGGTTGTAGGGAAA
Unaligned ( gi|7 ): AAATCATTTAACCAGAACAAAATGATGATATGAGCAGATCCTAGCTAGTTTTACAGAATTGAAATCAGAGTTTGTTGGGAA
Unaligned ( gi|14 ): AAATCACCGAACAGGAAGAAAATGACAATATGTGCATATCCTACCTAGTTTTACACAATTAAAACCAGAAGCTGTA
Unaligned ( gi|20 ): AAATCATTTTAGTTAGTTTAGCTAGTTTTACAAAATTAAAACCAGAGGTTGTAGCGAAAT
Unaligned ( gi|30 ): GTTTTACAAAATTAAAACCAGAGGCTGTAGTGAAATAG
Alignments
lowQualScore :
lowQualScore :
lowQualScore :
consensus : TGCTGATGGCTACTTGGTTGAAAAATACCAAACTGCATAGCAGGAACAATATGTGGCTCTGCACTTGACAGAACTCATTCG
Reference ( family-1413 ) : TGCTGATGGCTACTTGGTTGAAAAATACCAAACTGCATAGCAGGAACAATATGTGGCTCTGCACTTGACAGAACTCATTCG
gi|10 : CTGATGGCGACTTGGTTGAGCAAAACCAAACTGCATAGCAGGAACAATATGTGGCTCTGCACTTGACAGAACTCATTC
gi|11 : TGATGGCTACTTGGTTGAAAAATACCAAACTACATAGCAAGAACAATATGTGGATCTGCACTTGACAAAACTCATTCG
gi|12 : GATAGTTACTTGGTTGAAAAATACTAAACTGCATAGCAGGAACAATATGTAGCTCTGCACTTGACAGAACTCATTTG
gi|13 : TGATGGCTATTTGGTTGAAAACTACCAAACTACATAGCAGGAACAATATGTGGCTCTGCACTTGACAGAACGCATT
gi|15 : TGGCTACTTGGCTGAAAAATACCAAACTACATAGCAGGAACAATATGTGGCTCTGTACTTGACAGAACTCATTCG
gi|16 : TGGCTACTTGGCTGAAAAATACCAAACTACATAGCAGGAACAATATGTGGCTCTGTACTTGACAGAACTCATTCG
gi|17 : GCTACTTGGTTGAAGAATAGCAAACTGTATAGCAGGAACAATATGTGGCTCTGCGCTTCACAGAACTAATTC
gi|18 : GCTACTTGGTTGAAGAATAGCAAACTGTATAGCAGGAACAATATATGGCTCTGAACTTCACAGAACTAATTCa
gi|19 : CTACTTGGTTGAAAAATACCAAACTGCATAGCAAGAACAATATGTGGCTCTGCACTTCACAGAACT
gi|21 : ACCAAACTACATAGCAGGAACAATATGCGGCTCTGCACTTGACGGAACTCATTCGtg
gi|22 : cTACCAAACTACATAGCAGGAACAATATGTGGCTCTACACTTCACAGAATTCATTCG
gi|23 : TACCAAACTGCACAGCAGGAACAATATGTGTCTCTGCACTTGACAAAACCCATT
gi|24 : TACCAAACTGCATAGCAGGAACAATATGTGGCTCTGCACTTCACAGAACTCATTCt
gi|25 : ATAGCAAACTGTATAGCAGGAACAATATGTGGCTCTGCACTTCACAGAACTAATT
gi|26 : TACTGATGGCTACTTGGTTGAAAAATACT-TACTACATAGCAGGAACACTTTGTGG
gi|27 : AAACTGCATTGCAGAAACAATATGTGGCTCTGCACTTCACAAAACTCATTCG
gi|28 : gAATACCAAACTGCATAGCAGGAACAATATGTGGCTCTGCACTT
gi|29 : GCAGGAACAATATGTGGCTCTGCACTTCACAGAACT
gi|31 : GCTACTTGGATGAAAAATACCAAACTACAAAGCAaa
gi|5 : TGCTGATGGTTACTTGGTTGAAAAATACCAAACTGCATAGCAGGAACAATATGTGGCTCTGCACTTGACAGAACTCATTTG
gi|6 : CTGATGGCTACTTGGTTTAAAAATACCAAACTACACAGCAGGAACAATATGTGGCTCTGCACTTGACAGAATTCATTCG
gi|8 : caGTTGATGACTTCTTGGTTGAAAAATACCAAACTGCATAGCAGGAACAACATGTGGCTCTGCACTTGACAGAACTCGTTCG
gi|9 : GCAGATGGCTACTTGGTTGAAAAATACTAAACTGCATAGCAGGAACAAATTTTGGCTCTGTACTTGACAGAACTCATTCG
8 sequences could not be aligned to this reference sequence:
Unaligned ( gi|1 ): AAATCATTGAACCGTAACAAAATGACAATATGCATAGACCCTAGCTAGTTTTTTACAACTATTTAACAACAATTATTATTACAACAATTATAACCAGAGGTTGTAGCAAAATA
Unaligned ( gi|2 ): AATCATTAAACTGGAACAAAATGACAATATGCGTAGATCCTAGCTAATTTTACAGAATTTAATTTTAAAAACCAGAGGTTGTTACAGCGAAA
Unaligned ( gi|3 ): CAAATCATTGAACCGCCATAAAAGGACAATATGCGCAGATTCTAGCTAGTTTTACATTAGCTAAGTCATCAATGTTATTCAGCATATA
Unaligned ( gi|4 ): AAATCATTTAACCAGAACAAAATGACGATATGAGCAGACCCTACCTAGATTTACAGAAATGAAACCAGAGGTTGTAGGGAAA
Unaligned ( gi|7 ): AAATCATTTAACCAGAACAAAATGATGATATGAGCAGATCCTAGCTAGTTTTACAGAATTGAAATCAGAGTTTGTTGGGAA
Unaligned ( gi|14 ): AAATCACCGAACAGGAAGAAAATGACAATATGTGCATATCCTACCTAGTTTTACACAATTAAAACCAGAAGCTGTA
Unaligned ( gi|20 ): AAATCATTTTAGTTAGTTTAGCTAGTTTTACAAAATTAAAACCAGAGGTTGTAGCGAAAT
Unaligned ( gi|30 ): GTTTTACAAAATTAAAACCAGAGGCTGTAGTGAAATAG