lowQualScore : 2 4444 99999999999999999999999999999999999999999999999999999999999999999999999999 111
lowQualScore : 0 6 6 88 99 6 6 5555 4 2 4 2 2 55555 2 99999999999999999999999999999999999999999999999999999999999999999999999999 777 66 888
lowQualScore : . . . .. .. . . .... . . . . . ..... . .......................................................................... ... .. ...
lowQualScore : 0 0 7 33 22 3 1 5555 4 2 4 2 2 66666 2 44444444444444444444444444444444444444444444444444444444444444444444444444 333 33 666
consensus : ATCAGGCTACTTCTCAATGAAAAAAT-CAT-GTT--TTTTCCCCAATTGAGGC--CAAA-A-AAAT-C-CC-AAAA-----TG-GAAAA---A--A-A-----A---------T-----T----------TT---T-T----TNTTTG---------AA-N--T---TTCTTACA--TNNGGGGATA
Reference ( gi|1 ) : ATTAG-CCACTTCTCAATGAAAAAAT-CAT-GTT--TTTTCCCTAACTGAGGTAACAAA-A-AAAT-C-CC-AAAA-----TG-GAAAA---A--A-A-----A---------C-----T----------TT---T-T----TGTTTG---------AA-A--T---TTCTTACA--TACAGGGATAT
gi|20 : ATCAA-CTACTTTACAATTAAAAAAT-CAT-G-T--TTTTCCCCAACTGAGGCA--AAA-A-AAAT-T-CC-AAAA-----TA-GAAA
gi|5 : TTAGGCTACTTCTCAATGGAAAAAT-CAT-GTT--TTTTCTCTAATTCAGGC----AA-A-TTAT-T-TT-A---------G-CAAAA---A--A-A-----A---------G-----T----------TT---T---------------------------T---TTCTTATATTTACA-GGATA
gi|2 : TTAAAGAAAGAAT-CAC-GTT--TTTTTCCCAATTGAGG---CAAA-ACAAAT-T-CC-AAAA-----CA-G------------------A---------T-----T----------TT---T-T----TTTTTGTGGT-----GA-A--TG--TTTTTTCA--TAACGGGATA
gi|16 : caatgttgcacagGAATAAATTCATTGTT--TTTTTC--AATTGAGG--GCAAA-A-AATT-C-CC-AAAA-----TG-AAAaa
gi|4 : gttaaacagAAAAAAT--A--GTT--TTTTTCCCAATTGGG----CAAA-A-AAAT-C-CC-AAAA-----TGAAAAAA---A--A-A-----A---------CAACAGT----------TT---T-T----AGGATA---------AT-A--T---TTTTTACA--Tcattttaaatttt
gi|3 : aacttcagtccAAAT-CAT-GTTGTTTTTTACCAATTGAGGC--CAAA-A-AAATTC-CC-AAAA-----T--GAAAA---A--A-A-----A---------T-----T----------TT---T-TCCCCTGTTTtaggatta
gi|15 : ttaacagaggccgCCCGAA-TGAGGTAAAAAA-A-AAAT-C-CC-TAAATTATTTG-G----------------------------C-----T----------TT---T-T----TCTGTG---------AATT--T---TTCTTACA--CGAGGGGATAttttaacattagaagataaaaa
gi|11 : CCCCAATTAACG---CAAATA-AAAT-C-C--GAAA-----TT-GAAAA---A--ATATATATA---------T-----TA---------TT---T-T----TTTTTA---------GA-ATTT---TTCTTACA--TTTGGGGAaaaa
gi|10 : CCCAATTGAGGCAA-AAA-T-AATT-C-CT-GAAA-----TG-AAAAA---A--A-A-----AAGATAG---T-----T----------TT---TGT----TGTTT----------------T---TTCTTACA--T
gi|6 : CCCAATTAAGG---CAAATA-AAAT-C-C--GAAA-----TT-GAAAA---A--ATATATATA---------T-----TA---------TT---T-T----TTTTTA---------GA-ATTT---TTCTTACA--TTTGGGGAttgaaggattaa
gi|7 : CCAATTCAGGCAAAAAA-A-AAAT-CAAA-AAAA-----TG-GAAAAATGA--A-A-----A---------T-----A----------TA---T-A----TTTTTT---------AA-ATTT---TTCTTGCA--TTAGGGGATAataaaa
gi|13 : AATTGAGGTAA-AAA-G-AATT-C-CC-AAAT-----TG-AAAAA---A--A-A-----AAT-------C-----T----------TT---T-T----TTTTTT---------AA-CT-T---TTCTTACA--T-TAGGGAaaac
gi|17 : caAACTGAGG---CCAA-A-AAAT-C-CC-AAAA-----TA-GAAAA---A--A-A-----ATTGAGGTGAC-----T----------TT-------------------------------T---TTCTTACA--TAAGGGGATAataaaa
gi|12 : cAATTGAGGCC-CAAA-A-AATT-C-CC-AAAA-----TG-AAAAA---A--A-A-----AAT-------C-----T----------TTTTAT-T----TTTTCT---------AT-T--T---TTCTGACA--TAAGGGGATAagacaa
gi|9 : AATTGAGGC--CAAA-A-AATT-T-CCAAAAA-----TG-GAGA-------------------------------T----------TT---T-T----TTTTTGATTTTTTTTAA-A--TTTGTTTTTACAT-TACA-GGATAaaa
gi|19 : cATTGAGG---CAAA-A-AAAT-C-CC-TAAA-----TG-AAAAAG--A--A-A-----A---------T-----T----------GT---G-T----TG--TG---------AATT--T---TTCTTACA--TG-AGGGATAaa
gi|18 : ATTGAGG---CAAA-A-AAAT-C-CC-TAAA-----TG-AAAAAG--A--A-A-----A---------T-----T----------GT---G-T----TG--TG---------AATT--T---TTCTTACA--TG-AGGGATAaaaa
gi|8 : ATTGAGG---CAAA-A-ATATTC-CC-AAAA-----TG-GAAAA---AGTA-A-----A---------A-----TATATATATAATT---T-T----TAATT----------------T---TTCTTACA--Taaaa
2 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|14 ): TTGAGGCCAAAAAATTTTCAAAAAATGGAGATTTTTTTTTGATTTTTTTAAAATTTGTTTTTACATTACAAATAACAA
Unaligned ( gi|21 ): AATTGAGGCCAAAATAATTGCCAAAATATGGTTGTTCTTTGTGAGTTTTTTT
Alignments
lowQualScore : 111 4444444444444444444444444444444444444444444444444444444444444
lowQualScore : 6 5 55 77 111 44 2 44 44 88888 0000000000000000000000000000000000000000000000000000000000000 2 2 5555
lowQualScore : . . .. .. ... .. . .. .. ..... ............................................................. . . ....
lowQualScore : 7 7 99 99 555 88 0 22 88 55555 3333333333333333333333333333333333333333333333333333333333333 2 2 9999
consensus : ATCAGGCTACTTCTCAATGAAAAAAT-CAT-GTT--TTTTCCCCAATTGAGGC--NAAAA--AAA-T-CCC--AAAA-----TGGAAAA---A----AA------A------T--------T--TT--T-T----TTTT-----TGAA-TTTT-CTT-ACATTAG-GGGATA
Reference ( family-1390 ) : ATCAGGCTACTTCTCAATGAAAAAAT-CAT-GTT--TTTTCCCCAATTGAGGC--CAAAA--AAA-T-CCC--AAAA-----TGGAAAA---A----AA------A------T--------T--TT--T-T----TNTT-----TGAA-NTTT-CTT-ACATNNG-GGGATA
gi|1 : GCCACTTCTCAATGAAAAAAT-CAT-GTT--TTTTCCCTAACTGAGGTAACAAAA--AAA-T-CCC--AAAA-----TGGAAAA---A----AA------A------C--------T--TT--T-T----TGTT-----TGAA-ATTT-CTT-ACATACA-GGGATA
gi|10 : attaCCCAATTGAGGC--AAAAAT-AAT-T-CCT--GAAA-----TGAAAAA---A----AA------AAGATAGT--------T--TT--TGT----TGTT-----T-----TTT-CTT-ACATTTGAAGGATt
gi|11 : CCCCAATTAACGC--AAATA--AAA-T--CC--GAAA-----TTGAAAA---A----AT------A------TATATATTAT--TT--T-T----TTTT-----AGAATTTTT-CTT-ACATTTG-GGGAtaa
gi|12 : AATTGAGGC--CCAAA--AAA-TTCCC--AAAA-----TGAAAAA---A----AA------AATC---T--------T--TTTAT-T----TTTT-----CTAT-TTTT-CTG-ACATAAG-GGGATA
gi|13 : AATTGAGGT--AAAAA--GAA-TTCCC--AAAT-----TGAAAAA---A----AA------AATC---T--------T--TT--T-T----TTTT-----TAAC-TTTT-CTT-ACATTAG-GGAATAaaa
gi|14 : caTTGAGGC--CAAAA--AAT-T-TTCAAAAAA-----TGGAGA------------------------------------TT--T-T----TTTT-----TG-A-TTTT-TTT-Aaaa
gi|15 : CCCGAATGAGGT--AAAAAAAAAA-T-CCC--TAAATTATTTGG---------------------------C--------T--TT--T-T----TCTG-----TGAATTTTT-CTT-ACACGAG-GGGATAaaatttgtttttacattacaaataacaa
gi|16 : GAATAAATTCATTGTT--TTTTTC--AATTGAGGG--CAAAA--AAT-T-CCC--AAAA-----T-GAAAC---ATTTTAA------A------T--------T--TT--aaaa
gi|17 : gttaaacagCAACTGAGGC--CAAAA---AA-T-CCC--AAAA-----TAGAAAA---A----AA------A------T--------TGAGG--T-G----ACTT-----T-----TTT-CTT-ACATAAG-GGGATA
gi|18 : ATTGAGGC---AAAA--AAA-T-CCC--TAAA-----TGAAAAAG--A----AA------A------T--------T--GT--G-T----TG-------TGAATTTTT-CTT-ACATGA--GGGATAagacaa
gi|19 : ATTGAGGC---AAAA--AAA-T-CCC--TAAA-----TGAAAAAG--A----AA------A------T--------T--GT--G-T----TG-------TGAATTTTT-CTT-ACATGA--GGGATAaaaa
gi|2 : TTAAAGAAAGAAT-CAC-GTT--TTTTTCCCAATTGAGGC--AAAAC--AAA-T-TCC--AAAA-----CAG--------------------A------T--------T--TT--T-T----TTTTTGTGGTGAA-TGTT-TTT-TCATAAC-GGGATAaaaa
gi|20 : caatgttgcacagATCAA-CTACTTTACAATTAAAAAAT-CAT-GTT--TT-TCCCCAACTGAGGC--AAAAA--AAA-T-TCC--AAAA-----TAGAAAaa
gi|3 : AAAT-CAT-GTTGTTTTTTACCAATTGAGGC--CAAAA--AAATT-CCC--AAAA-----T-GAAAA---A----AA------A------T--------T--TT--T-T----CCCC-----TG---TTTT-TTTAACATTAG-AAGATA
gi|4 : ttaacagaggccgAAAAAAT--A--GTT--TTTTTCCCAATTGGG----CAAAA--AAA-T-CCC--AAAA-----TGAAAAA---A----AAAACAACA------G--------T--TT--T-T----AGGA-----TAAT-ATTT-TTT-ACATTAG-aaaa
gi|5 : aacttcagtccTTAGGCTACTTCTCAATGGAAAAAT-CAT-GTT--TTTTCTCTAATTCAGGC----AAA--TTA-T-TTT--A---------GCAAAA---A----AA------A------G--------T--TT--T-T----T----------------T-CTT-ATATTTACAGGATAatta
gi|6 : CCCAATTAAGGC--AAATA--AAA-T--CC--GAAA-----TTGAAAA---A----AT------A------TATATATTAT--TT--T-T----TTTT-----AGAATTTTT-CTT-ACATTTG-GGGA
gi|7 : CCAATTCAGGC--AAAAA--AAA-A-ATC--AAAAAAA--TGGAAAA---ATGA-AA------A------T--------A--TA--TAT----TTTT-----TAAA-TTTTTCTT-GCATTAG-GGGATAataaaa
gi|8 : ATTGAGGC--AAAAA--TAT-T-CCC--AAAA-----TGGAAAAAGTA----AA------A------TA-------T--AT--A-TATAATTTT-----TAAT-TTTT-CTT-ACATTAG-aaac
gi|9 : CAATTGAGGC--CAAAA--AAT-T-TCCA-AAAA-----TGGAGA---------------------------------T--TT--T-T----TTTT-----TGAT-TTTT-TTT-AAATTTG-ataattaaaa
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|21 ): AATTGAGGCCAAAATAATTGCCAAAATATGGTTGTTCTTTGTGAGTTTTTTT
Alignments
lowQualScore : 3333333333333333333333333333333 111
lowQualScore : 6 5 55 77 8 22 2 44 44 44 333 55555 8888888888888888888888888888888 3333 4444 55555 111 4444 4 2 2 0
lowQualScore : . . .. .. . .. . .. .. .. ... ..... ............................... .... .... ..... ... .... . . . .
lowQualScore : 7 7 99 99 8 88 0 88 22 88 555 00000 7777777777777777777777777777777 0000 7777 66666 222 7777 7 4 0 1
consensus : ATCAGGCTACTTCTCAATGAAAAAAT-CAT-GTT--TTTTCCCCAATTGAGGCAA--AAA-AAA--T-CCC--AAAA---T-----GGAAAA---A----AA---A---T--------T----TT--T-T----TTTT-----TGAA-T----TTT-CTT-ACATNAGGGGATA
Reference ( family-1390 ) : ATCAGGCTACTTCTCAATGAAAAAAT-CAT-GTT--TTTTCCCCAATTGAGGCNA--AAA-AAA--T-CCC--AAAA---T-----GGAAAA---A----AA---A---T--------T----TT--T-T----TTTT-----TGAA-T----TTT-CTT-ACATTAGGGGATA
gi|1 : GCCACTTCTCAATGAAAAAAT-CAT-GTT--TTTTCCCTAACTGAGGTAACAAAA-AAA--T-CCC--AAAA---T-----GGAAAA---A----AA---A---C--------T----TT--T-T----TGTT-----TGAA-A----TTT-CTT-ACATACAGGGATA
gi|10 : attaCCCAATTGAGGCAA--AAATAAT--T-CCT--GAAA---T-----GAAAAA---A----AAAAGA---T--------A----GT--T-T----TTGT-----TGTT-T----TTT-CTT-ACATTt
gi|11 : CCCCAATTAACGCAA--ATA-AAA--T--CC--GAAA---T-----TGAAAA---A----AT---A---TATATATTAT----TT--T-T----TTTT-----AGAATT----TTT-CTT-ACATTTGGGGAtgaaggattaa
gi|12 : AATTGAGGCCC--AAA-AAA--TTCCC--AAAA---T-----GAAAAA---A----AA---AATCT--------T----TTTAT-T----TTTT-----CTAT-T----TTT-CTG-ACATAAGGGGATA
gi|13 : AATTGAGGTAA--AAA-GAA--TTCCC--AAAT---T-----GAAAAA---A----AA---AATCT--------T----TT--T-T----TTTT-----TAAC-T----TTT-CTT-ACATTAGGGAATAaaa
gi|14 : caTTGAGGCCA--AAA-AAT--T-TTCAAAAAA---T-----GGAGA--------------------------------TT--T-T----TTTT-----TG-A-T----TTT-TTT-Aaaa
gi|15 : CCCGAATGAGGTAA--AAA-AAAAAT-CCC--TAAA---TTATTTGG---------------------C--------T----TT--T-T----TCTG-----TGAA-T----TTTTCTT-ACACGAGGGGATAaaatttgtttttacattacaaataacaa
gi|16 : GAATAAATTCATTGTT--TTTTTC--AATTGAGGGCA--AAA-AAT--T-CCC--AAAA---T------GAAAC---ATTTTAA---A---T--------T----TT--aaaa
gi|17 : gttaaacagCAACTGAGGCCA--AAA--AA--T-CCC--AAAA---T-----AGAAAA---A----AA---A---T--------TGAGGTG--A-C----TT------------T----TTT-CTT-ACATAAGGGGATA
gi|18 : ATTGAGGC-A--AAA-AAA--T-CCC--TAAA---T-----GAAAAAG--A----AA---A-----------------TT--G-T----GTTG-----TGAATT----TTT-CTT-ACATGA-GGGATAagacaa
gi|19 : ATTGAGGC-A--AAA-AAA--T-CCC--TAAA---T-----GAAAAAG--A----AA---A-----------------TT--G-T----GTTG-----TGAATT----TTT-CTT-ACATGA-GGGATAaaaa
gi|2 : TTAAAGAAAGAAT-CAC-GTT--TTTTTCCCAATTGAGGCAA--AAC-AAA--T-TCC--AAAA---C-----AG-----------------A---T--------T----TT--T-T----TTTTTGTGGTGAA-T----GTT-TTT-TCATAACGGGATAaaaa
gi|20 : caatgttgcacagATCAA-CTACTTTACAATTAAAAAAT-CAT-GTT--TT-TCCCCAACTGAGGCAA--AAA-AAA--T-TCC--AAAA---T-----AGAAAaa
gi|3 : AAAT-CAT-GTTGTTTTTTACCAATTGAGGCCA--AAA-AAAT-T-CCC--AAAA---T------GAAAA---A----AA---A---T--------T----TT--T-T----CCCC-----TG---T----TTT-TTTAACATTAGAAGATA
gi|4 : ttaacagaggccgAAAAAAT--A--GTT--TTTTTCCCAATTG-GGC-A--AAA-AAA--T-CCC--AAAA---T-----GAAAAA---A----AA---A---A--------CAA--CA--G-T----TTTT-----AGGA-TAATATTT-TTT-ACATTAGGaaaa
gi|5 : aacttcagtccTTAGGCTACTTCTCAATGGAAAAAT-CAT-GTT--TTTTCTCTAATTCAGGC----AAA-TTA--T-TTT--A------------GCAAAA---A----AA---A---G--------T----TT--T-T----TTCT-----TATA-T----TTatta
gi|6 : CCCAATTAAGGCAA--ATA-AAA--T--CC--GAAA---T-----TGAAAA---A----AT---A---TATATATTAT----TT--T-T----TTTT-----AGAATT----TTT-CTT-ACATTTGGGGAacaggata
gi|7 : CCAATTCAGGCAA--AAA-AAA--A-ATC--AAAAAAAT-----GGAAAA---ATGA-AA---A---T--------A----TA--TAT----TTTT-----TAAA-T----TTTTCTT-GCATTAGGGGATAataaaa
gi|8 : ATTGAGGCAA--AAA-TAT--T-CCC--AAAA---T-----GGAAAAAGTA----AA---A---TA-------T----AT--A-TATAATTTT-----TAAT-T----TTT-CTT-ACATTAGaaac
gi|9 : CAATTGAGGCCA--AAA-AAT--T-TCCA-AAAA---T-----GGAGA---------------------------T----TT--T-T----TTTT-----TGAT-T----TTT-TTT-AAATTataattaaaa
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|21 ): AATTGAGGCCAAAATAATTGCCAAAATATGGTTGTTCTTTGTGAGTTTTTTT
Alignments
lowQualScore : 33333333333333333333333333333333 11
lowQualScore : 6 5 55 77 22 33 55 22 2 333 777777 66666666666666666666666666666666 3333 5555 55555 00 5555 5 2 1 0
lowQualScore : . . .. .. .. .. .. .. . ... ...... ................................ .... .... ..... .. .... . . . .
lowQualScore : 7 7 99 99 99 55 00 99 1 777 000000 77777777777777777777777777777777 7777 0000 99999 88 0000 0 5 0 1
consensus : ATCAGGCTACTTCTCAATGAAAAAAT-CAT-GTT--TTTTCCCCAATTGAGGCAA--AAA-AAA--T-CCC-AAAA---T-----GGAAAA---A----AA---A----T--------T----TT--T-T----TTTT-----TGAA-T----TTT-CTT-ACATNAGGGGATA
Reference ( family-1390 ) : ATCAGGCTACTTCTCAATGAAAAAAT-CAT-GTT--TTTTCCCCAATTGAGGCAA--AAA-AAA--T-CCC-AAAA---T-----GGAAAA---A----AA---A----T--------T----TT--T-T----TTTT-----TGAA-T----TTT-CTT-ACATNAGGGGATA
gi|1 : GCCACTTCTCAATGAAAAAAT-CAT-GTT--TTTTCCCTAACTGAGGTAACAAAA-AAA--T-CCC-AAAA---T-----GGAAAA---A----AA---A----C--------T----TT--T-T----TGTT-----TGAA-A----TTT-CTT-ACATACAGGGATA
gi|10 : attaCCCAATTGAGGCAA--AAATAAT--T-CCT-GAAA---T-----GAAAAA---A----AAAAGA----T--------A----GT--T-T----TTGT-----TGTT-T----TTT-CTT-ACATt
gi|11 : CCCCAATTAACGCAA--ATA-AAA--T--CC-GAAA---T-----TGAAAA---A----AT---A----TATATATTAT----TT--T-T----TTTT-----AGAATT----TTT-CTT-ACATTTGGGGAttgaaggattaa
gi|12 : AATTGAGGCCC--AAA-AAA--TTCCC-AAAA---T-----GAAAAA---A----AA---AATC-T--------T----TTTAT-T----TTTT-----CTAT-T----TTT-CTG-ACATAAGGGGATA
gi|13 : AATTGAGGTAA--AAA-GAA--T-TCC-CAAA---T-----TGAAAA---A----AA---AAATCT--------T----TT--T-T----TTTT-----TAAC-T----TTT-CTT-ACATTAGGGAATAaaa
gi|15 : caCCCGAATGAGGTAA--AAA-AAAAAT-CCC-TAAA---TTATTTGG----------------------C--------T----TT--T-T----TCTG-----TGAA-T----TTTTCTT-ACACGAGGGGATAaaa
gi|16 : GAATAAATTCATTGTT--TTTTTC--AATTGAGGGCA--AAA-AAT--T-CCC-AAAA---T------GAAAC---ATTTTAA---A----T--------T----TT--aaaa
gi|17 : gttaaacagCAACTGAGGCCA--AAA--AA--T-CCC-AAAA---T-----AGAAAA---A----AA---A----T--------TGAGGTG--A-C----TT------------T----TTT-CTT-ACATAAGGGGATA
gi|18 : ATTGAGGCAA--AA--AAA--T-CCC-TAAA---T-----GAAAAAG--A----AA---A------------------TT--G-T----GTTG-----TGAATT----TTT-CTT-ACATGA-GGGATAagacaa
gi|19 : ATTGAGGCAA--AA--AAA--T-CCC-TAAA---T-----GAAAAAG--A----AA---A------------------TT--G-T----GTTG-----TGAATT----TTT-CTT-ACATGA-GGGATAaaaa
gi|2 : TTAAAGAAAGAAT-CAC-GTT--TTTTTCCCAATTGAGGCAA--AAC-AAA--T-TCC-AAAA---C-----AG-----------------A----T--------T----TT--T-T----TTTTTGTGGTGAA-T----GTT-TTT-TCATAACGGGATAaaaa
gi|20 : caatgttgcacagATCAA-CTACTTTACAATTAAAAAAT-CAT-GTT--TT-TCCCCAACTGAGGCAA--AAA-AAA--T-TCC-AAAA---T-----AGAAAaa
gi|3 : AAAT-CAT-GTTGTTTTTTACCAATTGAGGCCA--AAA-AAAT-T-CCC-AAAA---T------GAAAA---A----AA---A----T--------T----TT--T-T----CCCC-----TG---T----TTT-TTTAACATTAGAAGATA
gi|4 : ttaacagaggccgAAAAAAT--A--GTT--TTTTTCCCAATTG-GGCAA--AA--AAA--T-CCC-AAAA---T-----GAAAAA---A----AA---A----A--------CAA--CA--G-T----TTTT-----AGGA-TAATATTT-TTT-ACATTAGGaaaa
gi|5 : aacttcagtccTTAGGCTACTTCTCAATGGAAAAAT-CAT-GTT--TTTTCTCTAATTCAGGCAA--ATT-A----T-TTT-A------------GCAAAA---A----AA---A----G--------T----TT--T-T----TTCT-----TATA-T----TTatta
gi|6 : CCCAATTAAGGCAA--ATA-AAA--T--CC-GAAA---T-----TGAAAA---A----AT---A----TATATATTAT----TT--T-T----TTTT-----AGAATT----TTT-CTT-ACATTTGGGGAacaggata
gi|7 : CCAATTCAGGCAA--AAA-AAA--A-ATC-AAAAAAAT-----GGAAAA---ATGA-AA---A----T--------A----TA--TAT----TTTT-----TAAA-T----TTTTCTT-GCATTAGGGGATAataaaa
gi|8 : ATTGAGGCAA--AAA-TAT--T-CCC-AAAA---T-----GGAAAAAGTA----AA---A----TA-------T----AT--A-TATAATTTT-----TAAT-T----TTT-CTT-ACATTAGaaac
gi|9 : CAATTGAGGCCA--AAA-AAT--T-TCCAAAAA---T-----GGAGA----------------------------T----TT--T-T----TTTT-----TGAT-T----TTT-TTT-AAATataattaaaa
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|14 ): TTGAGGCCAAAAAATTTTCAAAAAATGGAGATTTTTTTTTGATTTTTTTAAAATTTGTTTTTACATTACAAATAACAA
Unaligned ( gi|21 ): AATTGAGGCCAAAATAATTGCCAAAATATGGTTGTTCTTTGTGAGTTTTTTT
Alignments
lowQualScore : 33333333333333333333333333333333 11
lowQualScore : 6 5 55 77 22 33 55 22 2 333 777777 66666666666666666666666666666666 3333 5555 55555 00 5555 5 2 1 0
lowQualScore : . . .. .. .. .. .. .. . ... ...... ................................ .... .... ..... .. .... . . . .
lowQualScore : 7 7 99 99 99 55 00 99 1 777 000000 77777777777777777777777777777777 7777 0000 99999 88 0000 0 5 0 1
consensus : ATCAGGCTACTTCTCAATGAAAAAAT-CAT-GTT--TTTTCCCCAATTGAGGCAA--AAA-AAA--T-CCC-AAAA---T-----GGAAAA---A----AA---A----T--------T----TT--T-T----TTTT-----TGAA-T----TTT-CTT-ACATNAGGGGATA
Reference ( family-1390 ) : ATCAGGCTACTTCTCAATGAAAAAAT-CAT-GTT--TTTTCCCCAATTGAGGCAA--AAA-AAA--T-CCC-AAAA---T-----GGAAAA---A----AA---A----T--------T----TT--T-T----TTTT-----TGAA-T----TTT-CTT-ACATNAGGGGATA
gi|1 : GCCACTTCTCAATGAAAAAAT-CAT-GTT--TTTTCCCTAACTGAGGTAACAAAA-AAA--T-CCC-AAAA---T-----GGAAAA---A----AA---A----C--------T----TT--T-T----TGTT-----TGAA-A----TTT-CTT-ACATACAGGGATA
gi|10 : attaCCCAATTGAGGCAA--AAATAAT--T-CCT-GAAA---T-----GAAAAA---A----AAAAGA----T--------A----GT--T-T----TTGT-----TGTT-T----TTT-CTT-ACATt
gi|11 : CCCCAATTAACGCAA--ATA-AAA--T--CC-GAAA---T-----TGAAAA---A----AT---A----TATATATTAT----TT--T-T----TTTT-----AGAATT----TTT-CTT-ACATTTGGGGAttgaaggattaa
gi|12 : AATTGAGGCCC--AAA-AAA--TTCCC-AAAA---T-----GAAAAA---A----AA---AATC-T--------T----TTTAT-T----TTTT-----CTAT-T----TTT-CTG-ACATAAGGGGATA
gi|13 : AATTGAGGTAA--AAA-GAA--T-TCC-CAAA---T-----TGAAAA---A----AA---AAATCT--------T----TT--T-T----TTTT-----TAAC-T----TTT-CTT-ACATTAGGGAATAaaa
gi|15 : caCCCGAATGAGGTAA--AAA-AAAAAT-CCC-TAAA---TTATTTGG----------------------C--------T----TT--T-T----TCTG-----TGAA-T----TTTTCTT-ACACGAGGGGATAaaa
gi|16 : GAATAAATTCATTGTT--TTTTTC--AATTGAGGGCA--AAA-AAT--T-CCC-AAAA---T------GAAAC---ATTTTAA---A----T--------T----TT--aaaa
gi|17 : gttaaacagCAACTGAGGCCA--AAA--AA--T-CCC-AAAA---T-----AGAAAA---A----AA---A----T--------TGAGGTG--A-C----TT------------T----TTT-CTT-ACATAAGGGGATA
gi|18 : ATTGAGGCAA--AA--AAA--T-CCC-TAAA---T-----GAAAAAG--A----AA---A------------------TT--G-T----GTTG-----TGAATT----TTT-CTT-ACATGA-GGGATAagacaa
gi|19 : ATTGAGGCAA--AA--AAA--T-CCC-TAAA---T-----GAAAAAG--A----AA---A------------------TT--G-T----GTTG-----TGAATT----TTT-CTT-ACATGA-GGGATAaaaa
gi|2 : TTAAAGAAAGAAT-CAC-GTT--TTTTTCCCAATTGAGGCAA--AAC-AAA--T-TCC-AAAA---C-----AG-----------------A----T--------T----TT--T-T----TTTTTGTGGTGAA-T----GTT-TTT-TCATAACGGGATAaaaa
gi|20 : caatgttgcacagATCAA-CTACTTTACAATTAAAAAAT-CAT-GTT--TT-TCCCCAACTGAGGCAA--AAA-AAA--T-TCC-AAAA---T-----AGAAAaa
gi|3 : AAAT-CAT-GTTGTTTTTTACCAATTGAGGCCA--AAA-AAAT-T-CCC-AAAA---T------GAAAA---A----AA---A----T--------T----TT--T-T----CCCC-----TG---T----TTT-TTTAACATTAGAAGATA
gi|4 : ttaacagaggccgAAAAAAT--A--GTT--TTTTTCCCAATTG-GGCAA--AA--AAA--T-CCC-AAAA---T-----GAAAAA---A----AA---A----A--------CAA--CA--G-T----TTTT-----AGGA-TAATATTT-TTT-ACATTAGGaaaa
gi|5 : aacttcagtccTTAGGCTACTTCTCAATGGAAAAAT-CAT-GTT--TTTTCTCTAATTCAGGCAA--ATT-A----T-TTT-A------------GCAAAA---A----AA---A----G--------T----TT--T-T----TTCT-----TATA-T----TTatta
gi|6 : CCCAATTAAGGCAA--ATA-AAA--T--CC-GAAA---T-----TGAAAA---A----AT---A----TATATATTAT----TT--T-T----TTTT-----AGAATT----TTT-CTT-ACATTTGGGGAacaggata
gi|7 : CCAATTCAGGCAA--AAA-AAA--A-ATC-AAAAAAAT-----GGAAAA---ATGA-AA---A----T--------A----TA--TAT----TTTT-----TAAA-T----TTTTCTT-GCATTAGGGGATAataaaa
gi|8 : ATTGAGGCAA--AAA-TAT--T-CCC-AAAA---T-----GGAAAAAGTA----AA---A----TA-------T----AT--A-TATAATTTT-----TAAT-T----TTT-CTT-ACATTAGaaac
gi|9 : CAATTGAGGCCA--AAA-AAT--T-TCCAAAAA---T-----GGAGA----------------------------T----TT--T-T----TTTT-----TGAT-T----TTT-TTT-AAATataattaaaa
blockSeqs : G T TT GT . AT AA TC A AAA TATTTG AATATATATATTAT TAT ATAA TGTGG AT AATA T A T
blockSeqs : . . C . . A T C . . G AATATATATATTAT TA . . AT . T . A
blockSeqs : . T . . A . T . . T AAAAAATCTT T . . AT . . . T
blockSeqs : . T . . A . C . . G ATTTTAAATT T . . AT . . . G
blockSeqs : . T . . A . C . . T AAAATTGAGG T . . T . . . A
blockSeqs : . . . . A . C . . A AGTAAAATAT T . . T . . . G
blockSeqs : . A . C . . G AAAAAGATA A . . C . . . G
blockSeqs : . C . C . . G AAAAATCTT G . . A . . . A
blockSeqs : . A . T . . A ATGAAAATA G . . A . . . T
blockSeqs : . A . T . . A AAAAACAA T . . A . . . T
blockSeqs : . T . C . . G AAAATT T . . A . . . T
blockSeqs : . A . C . . G AAAAGT G . . A . . . T
blockSeqs : . A . T . . T GAAAA T . . T . . . T
blockSeqs : . A . A . . G GAAAA T . . T . . .
blockSeqs : . A . C . . G ATT A . . . . . .
blockSeqs : . . . T . . G CT T . . . .
blockSeqs : . . . . . . . T
blockSeqs : . . . . . . .
blockSeqCons : ** AAAATT**************************
originalCons : ATCAGGCTACTTCTCAATGAAAAAAT-CAT-GTT--TTTTCCCCAATTGAGGCAA--AAA-AAA--T-CCC-AAAA---T-----GGAAAA---A----AA---A----T--------T----TT--T-T----TTTT-----TGAA-T----TTT-CTT-ACATNAGGGGATA
finalCons : ATCAGGCTACTTCTCAATGAAAAAAT-CAT-GTT--TTTTCCCCAATTGAGGCAA--AAA-AAA--T-CCC-AAAA---T-----GGAAAAAAAATT--------------------------TT--T-T----TTTT-----TGAA-T----TTT-CTT-ACATNAGGGGATA
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|14 ): TTGAGGCCAAAAAATTTTCAAAAAATGGAGATTTTTTTTTGATTTTTTTAAAATTTGTTTTTACATTACAAATAACAA
Unaligned ( gi|21 ): AATTGAGGCCAAAATAATTGCCAAAATATGGTTGTTCTTTGTGAGTTTTTTT
Alignments
lowQualScore : 33333333333333333333333333333333 11
lowQualScore : 6 5 55 77 22 33 55 22 2 333 777777 66666666666666666666666666666666 3333 5555 55555 00 5555 5 2 1 0
lowQualScore : . . .. .. .. .. .. .. . ... ...... ................................ .... .... ..... .. .... . . . .
lowQualScore : 7 7 99 99 99 55 00 99 1 777 000000 77777777777777777777777777777777 7777 0000 99999 88 0000 0 5 0 1
consensus : ATCAGGCTACTTCTCAATGAAAAAAT-CAT-GTT--TTTTCCCCAATTGAGGCAA--AAA-AAA--T-CCC-AAAA---T-----GGAAAA---A----AA---A----T--------T----TT--T-T----TTTT-----TGAA-T----TTT-CTT-ACATNAGGGGATA
Reference ( family-1390 ) : ATCAGGCTACTTCTCAATGAAAAAAT-CAT-GTT--TTTTCCCCAATTGAGGCAA--AAA-AAA--T-CCC-AAAA---T-----GGAAAA---A----AA---A----T--------T----TT--T-T----TTTT-----TGAA-T----TTT-CTT-ACATNAGGGGATA
gi|1 : GCCACTTCTCAATGAAAAAAT-CAT-GTT--TTTTCCCTAACTGAGGTAACAAAA-AAA--T-CCC-AAAA---T-----GGAAAA---A----AA---A----C--------T----TT--T-T----TGTT-----TGAA-A----TTT-CTT-ACATACAGGGATA
gi|10 : attaCCCAATTGAGGCAA--AAATAAT--T-CCT-GAAA---T-----GAAAAA---A----AAAAGA----T--------A----GT--T-T----TTGT-----TGTT-T----TTT-CTT-ACATt
gi|11 : CCCCAATTAACGCAA--ATA-AAA--T--CC-GAAA---T-----TGAAAA---A----AT---A----TATATATTAT----TT--T-T----TTTT-----AGAATT----TTT-CTT-ACATTTGGGGAttgaaggattaa
gi|12 : AATTGAGGCCC--AAA-AAA--TTCCC-AAAA---T-----GAAAAA---A----AA---AATC-T--------T----TTTAT-T----TTTT-----CTAT-T----TTT-CTG-ACATAAGGGGATA
gi|13 : AATTGAGGTAA--AAA-GAA--T-TCC-CAAA---T-----TGAAAA---A----AA---AAATCT--------T----TT--T-T----TTTT-----TAAC-T----TTT-CTT-ACATTAGGGAATAaaa
gi|15 : caCCCGAATGAGGTAA--AAA-AAAAAT-CCC-TAAA---TTATTTGG----------------------C--------T----TT--T-T----TCTG-----TGAA-T----TTTTCTT-ACACGAGGGGATAaaa
gi|16 : GAATAAATTCATTGTT--TTTTTC--AATTGAGGGCA--AAA-AAT--T-CCC-AAAA---T------GAAAC---ATTTTAA---A----T--------T----TT--aaaa
gi|17 : gttaaacagCAACTGAGGCCA--AAA--AA--T-CCC-AAAA---T-----AGAAAA---A----AA---A----T--------TGAGGTG--A-C----TT------------T----TTT-CTT-ACATAAGGGGATA
gi|18 : ATTGAGGCAA--AA--AAA--T-CCC-TAAA---T-----GAAAAAG--A----AA---A------------------TT--G-T----GTTG-----TGAATT----TTT-CTT-ACATGA-GGGATAagacaa
gi|19 : ATTGAGGCAA--AA--AAA--T-CCC-TAAA---T-----GAAAAAG--A----AA---A------------------TT--G-T----GTTG-----TGAATT----TTT-CTT-ACATGA-GGGATAaaaa
gi|2 : TTAAAGAAAGAAT-CAC-GTT--TTTTTCCCAATTGAGGCAA--AAC-AAA--T-TCC-AAAA---C-----AG-----------------A----T--------T----TT--T-T----TTTTTGTGGTGAA-T----GTT-TTT-TCATAACGGGATAaaaa
gi|20 : caatgttgcacagATCAA-CTACTTTACAATTAAAAAAT-CAT-GTT--TT-TCCCCAACTGAGGCAA--AAA-AAA--T-TCC-AAAA---T-----AGAAAaa
gi|3 : AAAT-CAT-GTTGTTTTTTACCAATTGAGGCCA--AAA-AAAT-T-CCC-AAAA---T------GAAAA---A----AA---A----T--------T----TT--T-T----CCCC-----TG---T----TTT-TTTAACATTAGAAGATA
gi|4 : ttaacagaggccgAAAAAAT--A--GTT--TTTTTCCCAATTG-GGCAA--AA--AAA--T-CCC-AAAA---T-----GAAAAA---A----AA---A----A--------CAA--CA--G-T----TTTT-----AGGA-TAATATTT-TTT-ACATTAGGaaaa
gi|5 : aacttcagtccTTAGGCTACTTCTCAATGGAAAAAT-CAT-GTT--TTTTCTCTAATTCAGGCAA--ATT-A----T-TTT-A------------GCAAAA---A----AA---A----G--------T----TT--T-T----TTCT-----TATA-T----TTatta
gi|6 : CCCAATTAAGGCAA--ATA-AAA--T--CC-GAAA---T-----TGAAAA---A----AT---A----TATATATTAT----TT--T-T----TTTT-----AGAATT----TTT-CTT-ACATTTGGGGAacaggata
gi|7 : CCAATTCAGGCAA--AAA-AAA--A-ATC-AAAAAAAT-----GGAAAA---ATGA-AA---A----T--------A----TA--TAT----TTTT-----TAAA-T----TTTTCTT-GCATTAGGGGATAataaaa
gi|8 : ATTGAGGCAA--AAA-TAT--T-CCC-AAAA---T-----GGAAAAAGTA----AA---A----TA-------T----AT--A-TATAATTTT-----TAAT-T----TTT-CTT-ACATTAGaaac
gi|9 : CAATTGAGGCCA--AAA-AAT--T-TCCAAAAA---T-----GGAGA----------------------------T----TT--T-T----TTTT-----TGAT-T----TTT-TTT-AAATataattaaaa
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|14 ): TTGAGGCCAAAAAATTTTCAAAAAATGGAGATTTTTTTTTGATTTTTTTAAAATTTGTTTTTACATTACAAATAACAA
Unaligned ( gi|21 ): AATTGAGGCCAAAATAATTGCCAAAATATGGTTGTTCTTTGTGAGTTTTTTT